-- dump date 20140620_075738 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 396513000001 SEQ_END SEQ_END NC_012121.1 2566424 2566424 DR NC_012121.1; contig end 2566424..2566424 Staphylococcus carnosus subsp. carnosus TM300 YP_002633101.1 CDS rpmH NC_012121.1 87 224 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 87..224 Staphylococcus carnosus subsp. carnosus TM300 7552307 YP_002633102.1 CDS rnpA NC_012121.1 376 723 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 376..723 Staphylococcus carnosus subsp. carnosus TM300 7552069 YP_002633103.1 CDS trmE NC_012121.1 853 2235 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 853..2235 Staphylococcus carnosus subsp. carnosus TM300 7552033 YP_002633104.1 CDS gidA NC_012121.1 2251 4125 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2251..4125 Staphylococcus carnosus subsp. carnosus TM300 7552199 YP_002633105.1 CDS gidB NC_012121.1 4126 4848 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4126..4848 Staphylococcus carnosus subsp. carnosus TM300 7551627 YP_002633106.1 CDS Sca_0006 NC_012121.1 4895 5737 D similar to SpoOJ-like homolog,probably involved in regulation of transcription,InterPro: ParB-like partition protein; Hypothetical protein; putative DNA-binding protein 4895..5737 Staphylococcus carnosus subsp. carnosus TM300 7551628 YP_002633107.1 CDS Sca_0007 NC_012121.1 5872 6801 D Hypothetical protein; hypothetical protein 5872..6801 Staphylococcus carnosus subsp. carnosus TM300 7549770 YP_002633108.1 CDS Sca_0008 NC_012121.1 6816 6989 D Hypothetical protein; hypothetical protein 6816..6989 Staphylococcus carnosus subsp. carnosus TM300 7549771 YP_002633109.1 CDS Sca_0009 NC_012121.1 7083 7754 D Hypothetical protein; hypothetical protein 7083..7754 Staphylococcus carnosus subsp. carnosus TM300 7549772 YP_002633110.1 CDS Sca_0010 NC_012121.1 8074 9234 D (O31665) Transaminase mtnE (EC 2.6.1.-),InterPro: Aminotransferase class I and II; Hypothetical protein; putative aminotransferase 8074..9234 Staphylococcus carnosus subsp. carnosus TM300 7549773 YP_002633111.1 CDS Sca_0011 NC_012121.1 9943 10692 R conserved hypothetical protein,InterPro: Putative cyclase; Hypothetical protein; hypothetical protein complement(9943..10692) Staphylococcus carnosus subsp. carnosus TM300 7549774 YP_002633112.1 CDS metE NC_012121.1 10871 13114 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(10871..13114) Staphylococcus carnosus subsp. carnosus TM300 7549775 YP_002633113.1 CDS metH NC_012121.1 13111 14952 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein complement(13111..14952) Staphylococcus carnosus subsp. carnosus TM300 7551777 YP_002633114.1 CDS metC NC_012121.1 14906 16078 R Hypothetical protein; putative cystathionine beta-lyase complement(14906..16078) Staphylococcus carnosus subsp. carnosus TM300 7551779 YP_002633115.1 CDS Sca_0015 NC_012121.1 16830 17666 D Hypothetical protein; putative DNA-binding protein 16830..17666 Staphylococcus carnosus subsp. carnosus TM300 7551775 YP_002633116.1 CDS Sca_0016 NC_012121.1 17755 18654 D emb|CAG39381.1| putative membrane protein ,InterPro: Mechanosensitive (MS) ion channel; Hypothetical protein; hypothetical protein 17755..18654 Staphylococcus carnosus subsp. carnosus TM300 7549776 YP_002633117.1 CDS Sca_0017 NC_012121.1 18673 18885 D Hypothetical protein; hypothetical protein 18673..18885 Staphylococcus carnosus subsp. carnosus TM300 7549777 YP_002633118.1 CDS Sca_0018 NC_012121.1 18885 19982 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 18885..19982 Staphylococcus carnosus subsp. carnosus TM300 7549778 YP_002633119.1 CDS ribD NC_012121.1 20051 20761 R COG1985: Pyrimidine reductase, riboflavin biosynthesis [Desulfitobacterium hafniense]; Hypothetical protein; putative 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(20051..20761) Staphylococcus carnosus subsp. carnosus TM300 7549779 YP_002633120.1 CDS Sca_0020 NC_012121.1 21143 25450 D (ref|NP_991886.1| enhancing factor (viral) [Yersinia pestis biovar Medievalis str. 91001],InterPro: Peptidase M60 viral enhancin protein,YSIRK Gram-positive signal peptide,Surface protein from Gram-positive cocci,anchor region; Hypothetical protein; putative protease 21143..25450 Staphylococcus carnosus subsp. carnosus TM300 7552024 YP_002633121.1 CDS Sca_0021 NC_012121.1 25664 26431 R oxidoreductase, short-chain dehydrogenase/reductase family [Bacillus cereus ATCC 10987] gb|AAS39853.1| oxidoreductase, short-chain dehydrogenase/reductase family [Bacillus cereus ATCC 10987],InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative oxidoreductase complement(25664..26431) Staphylococcus carnosus subsp. carnosus TM300 7549780 YP_002633122.1 CDS argF NC_012121.1 26633 27637 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(26633..27637) Staphylococcus carnosus subsp. carnosus TM300 7549781 YP_002633123.1 CDS pemK NC_012121.1 27878 28228 R (P13976) Protein pemK,gi|24195434|gb|AAN48980.1| probable ppGpp-regulated growth inhibitor ChpA/MazF [Leptospira interrogans serovar lai str. 56601],InterPro: PemK-like protein; Hypothetical protein; putative cell growth inhibitor, pemK-like protein complement(27878..28228) Staphylococcus carnosus subsp. carnosus TM300 7551410 YP_002633124.1 CDS pemI NC_012121.1 28222 28479 R gi|16130690|ref|NP_417263.1| suppressor of inhibitory function of ChpA, PemI-like,autoregulated; part of proteic killer gene system,suppressor of inhibitory function of ChpA [Escherichia coli K12],pfam04014,SpoVT_AbrB, SpoVT / AbrB like domain. One member of this family is AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator or the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the Bacillus subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA binding activity in the Bacillus 0 AbrB homologue requires hexamerisation. Another family member has been isolated from the archaeon Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The E.coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.,only 75% aligned; Hypothetical protein; hypothetical protein complement(28222..28479) Staphylococcus carnosus subsp. carnosus TM300 7551923 YP_002633125.1 CDS nuc NC_012121.1 28637 29671 D (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase) (Micrococcal nuclease) (Staphylococcal nuclease),InterPro: Staphylococcus nuclease (SNase-like); Hypothetical protein; thermonuclease 28637..29671 Staphylococcus carnosus subsp. carnosus TM300 7551922 YP_002633126.1 CDS rpsF NC_012121.1 29812 30108 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 29812..30108 Staphylococcus carnosus subsp. carnosus TM300 7551869 YP_002633127.1 CDS ssb NC_012121.1 30130 30651 D (Q814G6) Single-strand binding protein (SSB) (Helix-destabilizing protein),InterPro: Single-strand binding protein; Hypothetical protein; putative single-strand DNA-binding protein 30130..30651 Staphylococcus carnosus subsp. carnosus TM300 7552079 YP_002633128.1 CDS rpsR NC_012121.1 30708 30950 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 30708..30950 Staphylococcus carnosus subsp. carnosus TM300 7552146 YP_002633129.1 CDS Sca_0029 NC_012121.1 31246 31464 D Hypothetical protein; hypothetical protein 31246..31464 Staphylococcus carnosus subsp. carnosus TM300 7552092 YP_002633130.1 CDS Sca_0030 NC_012121.1 31751 32074 D iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdI 31751..32074 Staphylococcus carnosus subsp. carnosus TM300 7549782 YP_002633131.1 CDS Sca_0031 NC_012121.1 32535 33128 D Hypothetical protein; hypothetical protein 32535..33128 Staphylococcus carnosus subsp. carnosus TM300 7549783 YP_002633132.1 CDS gpm3 NC_012121.1 33360 33953 D Hypothetical protein; putative phosphoglycerate mutase 33360..33953 Staphylococcus carnosus subsp. carnosus TM300 7549784 YP_002633133.1 CDS dapE NC_012121.1 34001 35167 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(34001..35167) Staphylococcus carnosus subsp. carnosus TM300 7551661 YP_002633134.1 CDS ydfG NC_012121.1 35442 35882 D ydfG; similar to hypothetical proteins,InterPro: Carboxymuconolactone decarboxylase; Hypothetical protein; hypothetical protein 35442..35882 Staphylococcus carnosus subsp. carnosus TM300 7551514 YP_002633135.1 CDS Sca_0035 NC_012121.1 35935 36558 R Hypothetical protein; putative lipoprotein complement(35935..36558) Staphylococcus carnosus subsp. carnosus TM300 7552305 YP_002633136.1 CDS Sca_0036 NC_012121.1 36632 37261 R b|AAN00897.1| PAP2 family protein [Streptococcus agalactiae 2603V/R],InterPro: PA-phosphatase related phosphoesterase; Hypothetical protein; putative phosphatase complement(36632..37261) Staphylococcus carnosus subsp. carnosus TM300 7549785 YP_002633137.1 CDS Sca_0037 NC_012121.1 37565 37684 D Hypothetical protein; hypothetical protein 37565..37684 Staphylococcus carnosus subsp. carnosus TM300 7549786 YP_002633138.1 CDS ahpF NC_012121.1 37836 39359 R (Q99WJ7) Alkyl hydroperoxide reductase subunit F (EC 1.6.4.-),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; alkyl hydroperoxide reductase subunit F complement(37836..39359) Staphylococcus carnosus subsp. carnosus TM300 7549787 YP_002633139.1 CDS ahpC NC_012121.1 39376 39945 R (Q8CMQ2) Alkyl hydroperoxide reductase subunit C (EC 1.6.4.-),InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Hypothetical protein; alkyl hydroperoxide reductase subunit C complement(39376..39945) Staphylococcus carnosus subsp. carnosus TM300 7551381 YP_002633140.1 CDS Sca_0040 NC_012121.1 40351 41130 R (P42270) 2-oxo-hepta-3-ene-17-dioic acid hydratase (EC 4.2.-.-) (OHED hydratase),InterPro: Hydratase/decarboxylase; Hypothetical protein; putative 2-keto-4-pentenoate hydratase complement(40351..41130) Staphylococcus carnosus subsp. carnosus TM300 7551380 YP_002633141.1 CDS Sca_0041 NC_012121.1 41290 42045 D (P39605) Nitro/flavin reductase (EC 1.-.-.-),InterPro: Nitroreductase family; Hypothetical protein; nitroreductase family protein 41290..42045 Staphylococcus carnosus subsp. carnosus TM300 7549788 YP_002633142.1 CDS Sca_0042 NC_012121.1 42155 43480 R Hypothetical protein; putative sodium:dicarboxylate symporter complement(42155..43480) Staphylococcus carnosus subsp. carnosus TM300 7549789 YP_002633143.1 CDS Sca_0043 NC_012121.1 43845 44816 R Hypothetical protein; putative DNA-binding protein complement(43845..44816) Staphylococcus carnosus subsp. carnosus TM300 7549790 YP_002633144.1 CDS Sca_0044 NC_012121.1 44934 45245 R similar to C-terminal part (aa 119..220) of gi|73663636|ref|YP_302417.1| Gene info hypothetical protein SSP2327 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length=221; Hypothetical protein; hypothetical protein complement(44934..45245) Staphylococcus carnosus subsp. carnosus TM300 7549791 YP_002633145.1 CDS Sca_0045 NC_012121.1 45327 45599 R similar to N-terminal part (aa 1..90) of gi|73663636|ref|YP_302417.1| Gene info hypothetical protein SSP2327 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length=221; Hypothetical protein; hypothetical protein complement(45327..45599) Staphylococcus carnosus subsp. carnosus TM300 7549792 YP_002633146.1 CDS Sca_0046 NC_012121.1 45707 46087 R Hypothetical protein; hypothetical protein complement(45707..46087) Staphylococcus carnosus subsp. carnosus TM300 7549793 YP_002633147.1 CDS xprT NC_012121.1 46819 47397 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 46819..47397 Staphylococcus carnosus subsp. carnosus TM300 7549794 YP_002633148.1 CDS pbuX NC_012121.1 47399 48667 D (P42086) Xanthine permease ,InterPro: Xanthine/uracil permease family; Hypothetical protein; putative xanthine permease 47399..48667 Staphylococcus carnosus subsp. carnosus TM300 7552302 YP_002633149.1 CDS guaB NC_012121.1 48701 50167 D (Q8CMQ7) Inosine-5-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD),InterPro: IMP dehydrogenase/GMP reductase; Hypothetical protein; putative inositol-monophosphate dehydrogenase 48701..50167 Staphylococcus carnosus subsp. carnosus TM300 7551910 YP_002633150.1 CDS guaA NC_012121.1 50184 51725 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 50184..51725 Staphylococcus carnosus subsp. carnosus TM300 7551671 YP_002633151.1 CDS Sca_0051 NC_012121.1 51990 52766 D (P54721) Hypothetical protein yfiE,PSI BLAST COG: Predicted ring-cleavage extradiol dioxygenase,COG0346,GloA, Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism],InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 51990..52766 Staphylococcus carnosus subsp. carnosus TM300 7551670 YP_002633152.1 CDS Sca_0052 NC_012121.1 52903 53454 D Hypothetical protein; hypothetical protein 52903..53454 Staphylococcus carnosus subsp. carnosus TM300 7549795 YP_002633153.1 CDS mutT NC_012121.1 53494 53898 R (P32091) MutT-like protein (ORF154),InterPro: NUDIX hydrolase; Hypothetical protein; mutT/nudix family protein complement(53494..53898) Staphylococcus carnosus subsp. carnosus TM300 7549796 YP_002633154.1 CDS Sca_0054 NC_012121.1 54059 54574 D Hypothetical protein; hypothetical protein 54059..54574 Staphylococcus carnosus subsp. carnosus TM300 7551831 YP_002633155.1 CDS Sca_0056 NC_012121.1 54861 56759 D (O34319) Putative glycosyl transferase ykcC (EC 2.-.-.-),InterPro: Glycosyl transferase family 2; Hypothetical protein; putative glycosyl transferase 54861..56759 Staphylococcus carnosus subsp. carnosus TM300 7549797 YP_002633156.1 CDS vba NC_012121.1 56876 58462 R (P39115) Nucleotide binding protein expZ,btk:BT9727_4858 (KEGG) vba; probable MDR-type ABC transporter, ATP-binding protein,InterPro: AAA ATPase; Hypothetical protein; ABC transporter ATP-binding protein complement(56876..58462) Staphylococcus carnosus subsp. carnosus TM300 7549798 YP_002633157.1 CDS cysH NC_012121.1 58773 59498 D (Q8CMX3) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8) (PAPS reductase thioredoxin dependent) (PAdoPS reductase) (3-phosphoadenylylsulfate reductase) (PAPS sulfotransferase),InterPro: Phosphoadenosine phosphosulfate reductase CysH-type; Hypothetical protein; putative phosphoadenosine phosphosulfate reductase 58773..59498 Staphylococcus carnosus subsp. carnosus TM300 7552294 YP_002633158.1 CDS cysJ NC_012121.1 59662 61506 D (P38039) Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) (SIR-FP),InterPro: FAD-binding; Hypothetical protein; putative sulfite reductase (NADPH) flavoprotein alpha-component 59662..61506 Staphylococcus carnosus subsp. carnosus TM300 7551503 YP_002633159.1 CDS cysI NC_012121.1 61530 63239 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 61530..63239 Staphylococcus carnosus subsp. carnosus TM300 7551505 YP_002633160.1 CDS cysG NC_012121.1 63264 64037 D (P11098) Siroheme synthase [Includes: Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM); Precorrin-2 dehydrogenase (EC 1.3.1.76); Sirohydrochlorin ferrochelatase (EC 4.99,InterPro: Uroporphyrin-III C-methyltransferase C-terminal; Hypothetical protein; putative uroporphyrin-III C-methyltransferase 63264..64037 Staphylococcus carnosus subsp. carnosus TM300 7551504 YP_002633161.1 CDS Sca_0062 NC_012121.1 64197 65099 D (P46490) Hypothetical protein HI0198,pfam01925,DUF81, Domain of unknown function DUF81. This integral membrane protein family has no known function. The alignment appears to contain two duplicated modules of three transmembrane helices.,InterPro: Protein of unknown function DUF81; Hypothetical protein; putative permease 64197..65099 Staphylococcus carnosus subsp. carnosus TM300 7551502 YP_002633162.1 CDS sat NC_012121.1 65118 66317 D ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 65118..66317 Staphylococcus carnosus subsp. carnosus TM300 7549799 YP_002633163.1 CDS cysC NC_012121.1 66323 66922 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 66323..66922 Staphylococcus carnosus subsp. carnosus TM300 7551499 YP_002633164.1 CDS Sca_0065 NC_012121.1 67060 67842 D (Q48436) Acetoin(diacetyl) reductase (EC 1.1.1.5) (Acetoin dehydrogenase) (AR) (Meso-23-butanediol dehydrogenase),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; acetoin reductase 67060..67842 Staphylococcus carnosus subsp. carnosus TM300 7551498 YP_002633165.1 CDS fcbC NC_012121.1 67895 68368 R gi|49242692|emb|CAG41415.1| hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252]; Hypothetical protein; putative thioesterase complement(67895..68368) Staphylococcus carnosus subsp. carnosus TM300 7549800 YP_002633166.1 CDS Sca_0067 NC_012121.1 68712 68879 D Hypothetical protein; hypothetical protein 68712..68879 Staphylococcus carnosus subsp. carnosus TM300 7551564 YP_002633167.1 CDS Sca_0068 NC_012121.1 69022 69606 D Hypothetical protein; putative lipoprotein 69022..69606 Staphylococcus carnosus subsp. carnosus TM300 7549801 YP_002633168.1 CDS metE NC_012121.1 70060 71187 D (P42318) Hypothetical protein yxjG,InterPro: Methionine synthase vitamin-B12 independent; Hypothetical protein; putative methionine synthase 70060..71187 Staphylococcus carnosus subsp. carnosus TM300 7549802 YP_002633169.1 CDS Sca_0070 NC_012121.1 71424 71747 D (P39044) Hypothetical protein X,InterPro: Transcriptional regulator PadR-like family; Hypothetical protein; putative transcriptional regulator 71424..71747 Staphylococcus carnosus subsp. carnosus TM300 7551778 YP_002633170.1 CDS Sca_0071 NC_012121.1 71740 72300 D gi|27468839|ref|NP_765476.1| (REFSEQ) gi|27316387|gb|AAO05562.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228]; Hypothetical protein; hypothetical protein 71740..72300 Staphylococcus carnosus subsp. carnosus TM300 7549803 YP_002633171.1 CDS Sca_0072 NC_012121.1 72297 72677 D similarity to N-terminal part (aa 1..111) of gi|27468838|ref|NP_765475.1| hypothetical protein SE1920 [Staphylococcus epidermidis ATCC 12228] Length =267; Hypothetical protein; hypothetical protein 72297..72677 Staphylococcus carnosus subsp. carnosus TM300 7549804 YP_002633172.1 CDS Sca_0073 NC_012121.1 72694 72783 D Hypothetical protein; hypothetical protein 72694..72783 Staphylococcus carnosus subsp. carnosus TM300 7549805 YP_002633173.1 CDS gloA NC_012121.1 73310 74302 D (Q9WXE6) Chlorohydroquinone/hydroquinone 12-dioxygenase (EC 1.13.11.-) (Hydroquinone meta-cleavage dioxygenase),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; glyoxylase family protein 73310..74302 Staphylococcus carnosus subsp. carnosus TM300 7549806 YP_002633174.1 CDS Sca_0075 NC_012121.1 74324 74926 D Hypothetical protein; putative phospholipase/carboxylesterase 74324..74926 Staphylococcus carnosus subsp. carnosus TM300 7551638 YP_002633175.1 CDS Sca_0076 NC_012121.1 75001 76146 R (Q01911) Tetracycline resistance protein from transposon Tn4351/Tn4400,InterPro: Flavoprotein monooxygenase; Hypothetical protein; putative oxidoreductase complement(75001..76146) Staphylococcus carnosus subsp. carnosus TM300 7549807 YP_002633176.1 CDS Sca_0077 NC_012121.1 76430 77134 R Hypothetical protein; hypothetical protein complement(76430..77134) Staphylococcus carnosus subsp. carnosus TM300 7549808 YP_002633177.1 CDS Sca_0078 NC_012121.1 77137 77676 R Hypothetical protein; hypothetical protein complement(77137..77676) Staphylococcus carnosus subsp. carnosus TM300 7549809 YP_002633178.1 CDS Sca_0079 NC_012121.1 77691 78533 R Hypothetical protein; hypothetical protein complement(77691..78533) Staphylococcus carnosus subsp. carnosus TM300 7549810 YP_002633179.1 CDS Sca_0080 NC_012121.1 78530 79054 R similar to gi|38142387|dbj|BAD00991.1| hypothetical protein [Staphylococcus warneri]; Hypothetical protein; putative DNA binding protein complement(78530..79054) Staphylococcus carnosus subsp. carnosus TM300 7549811 YP_002633180.1 CDS Sca_0081 NC_012121.1 79441 80133 R gi|17989361|ref|NP_541994.1| (REFSEQ) PROTEASE I [Brucella melitensis 16M],InterPro: Protein of unknown function ThiJ/PfpI; Hypothetical protein; putative intracellular protease/amidase complement(79441..80133) Staphylococcus carnosus subsp. carnosus TM300 7549812 YP_002633181.1 CDS Sca_0082 NC_012121.1 80762 81262 D (P43984) Hypothetical protein HI0318,InterPro: Isoprenylcysteine carboxyl methyltransferase; Hypothetical protein; hypothetical protein 80762..81262 Staphylococcus carnosus subsp. carnosus TM300 7549813 YP_002633182.1 CDS Sca_0083 NC_012121.1 81388 82122 D (Q06174) Carboxylesterase precursor (EC 3.1.1.1),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; putative esterase/lipase 81388..82122 Staphylococcus carnosus subsp. carnosus TM300 7549814 YP_002633183.1 CDS Sca_0084 NC_012121.1 82387 82974 D gi|13309880|gb|AAK18070.1| (GenBank (NCBI Entrez)) IcaR [Staphylococcus caprae],InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; ica operon transcriptional regulator 82387..82974 Staphylococcus carnosus subsp. carnosus TM300 7549815 YP_002633184.1 CDS Sca_0085 NC_012121.1 83302 84636 D (P45320) Hypothetical sodium-dependent transporter HI1690,InterPro: Sodium:neurotransmitter symporter; Hypothetical protein; putative sodium-dependent transporter 83302..84636 Staphylococcus carnosus subsp. carnosus TM300 7549816 YP_002633185.1 CDS cysM NC_012121.1 84836 85732 D (P56067) Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase),InterPro: Pyridoxal-5-phosphate-dependent enzyme beta family; Hypothetical protein; Pyridoxal-5'-phosphate-dependent enzyme, beta family 84836..85732 Staphylococcus carnosus subsp. carnosus TM300 7549817 YP_002633186.1 CDS metC NC_012121.1 85775 86920 D (P56069) Cystathionine gamma-synthase (EC 2.5.1.48) (CGS) (O-succinylhomoserine (Thiol)-lyase),InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; Hypothetical protein; putative Cys/Met metabolism pyridoxal-5'-phosphate dependent enzyme 85775..86920 Staphylococcus carnosus subsp. carnosus TM300 7551507 YP_002633187.1 CDS Sca_0088 NC_012121.1 87078 87698 D Hypothetical protein; putative LysE type translocator 87078..87698 Staphylococcus carnosus subsp. carnosus TM300 7551776 YP_002633188.1 CDS Sca_0089 NC_012121.1 87808 88278 R gi|27314681|gb|AAO03818.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228]; Hypothetical protein; putative thioesterase complement(87808..88278) Staphylococcus carnosus subsp. carnosus TM300 7549818 YP_002633189.1 CDS Sca_0090 NC_012121.1 88282 89250 R (Q99KP3) Lambda-crystallin homolog,InterPro: 3-hydroxyacyl-CoA dehydrogenase NAD binding domain; Hypothetical protein; putative 3-hydroxyacyl-CoA dehydrogenase complement(88282..89250) Staphylococcus carnosus subsp. carnosus TM300 7549819 YP_002633190.1 CDS Sca_0091 NC_012121.1 89252 90142 R Hypothetical protein; hypothetical protein complement(89252..90142) Staphylococcus carnosus subsp. carnosus TM300 7549820 YP_002633191.1 CDS Sca_0092 NC_012121.1 90262 90795 R (P17446) HTH-type transcriptional regulator betI,InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; putative transcriptional regulator complement(90262..90795) Staphylococcus carnosus subsp. carnosus TM300 7549821 YP_002633192.1 CDS Sca_0093 NC_012121.1 90962 91750 D (O06977) Hypothetical protein yvcN; Belongs to the arylamine N-acetyltransferase family,InterPro: N-acetyltransferase; Hypothetical protein; putative N-acetyltransferase 90962..91750 Staphylococcus carnosus subsp. carnosus TM300 7549822 YP_002633193.1 CDS Sca_0094 NC_012121.1 91831 94515 R (Q9KQ30) 5-nucleotidase precursor (EC 3.1.3.5),InterPro: Metallo-phosphoesterase; Hypothetical protein; putative 5'-nucleotidase complement(91831..94515) Staphylococcus carnosus subsp. carnosus TM300 7549823 YP_002633194.1 CDS Sca_0095 NC_012121.1 94983 95999 D putative exported protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49240818|emb|CAG39485.1| putative exported protein [Staphylococcus aureus subsp. aureus MRSA252],InterPro: CHAP; CHAP domain. This domain corresponds to an amidase function. Many of these proteins are involved in cell wall metabolism of bacteria. This domain is found at the N-terminus of proteins, where is functions as a glutathionylspermidine amidase EC:3.5.1.78.; Hypothetical protein; putative autolysin with LysM domain 94983..95999 Staphylococcus carnosus subsp. carnosus TM300 7549824 YP_002633195.1 CDS Sca_0096 NC_012121.1 96104 96400 R PFAM: Protein of unknown function (DUF1369),InterPro: TPR repeat,No homologs in staphylococcal species; Hypothetical protein; hypothetical protein complement(96104..96400) Staphylococcus carnosus subsp. carnosus TM300 7549825 YP_002633196.1 CDS Sca_0097 NC_012121.1 96570 96938 D InterPro: NUDIX hydrolase; Hypothetical protein; hypothetical protein 96570..96938 Staphylococcus carnosus subsp. carnosus TM300 7549826 YP_002633197.1 CDS Sca_0098 NC_012121.1 97005 97295 R No homolog in other staphylococcal species; Hypothetical protein; hypothetical protein complement(97005..97295) Staphylococcus carnosus subsp. carnosus TM300 7549827 YP_002633198.1 CDS Sca_0099 NC_012121.1 97384 98229 R InterPro: Patatin; Hypothetical protein; putative esterase of the alpha-beta hydrolase superfamily complement(97384..98229) Staphylococcus carnosus subsp. carnosus TM300 7549828 YP_002633199.1 CDS Sca_0100 NC_012121.1 98322 98912 R Hypothetical protein; hypothetical protein complement(98322..98912) Staphylococcus carnosus subsp. carnosus TM300 7549829 YP_002633200.1 CDS Sca_0101 NC_012121.1 99039 99311 R Putative membrane protein (TMHMM); Hypothetical protein; hypothetical protein complement(99039..99311) Staphylococcus carnosus subsp. carnosus TM300 7549830 YP_002633201.1 CDS Sca_0102 NC_012121.1 99422 100213 R putative membrane protein; Hypothetical protein; hypothetical protein complement(99422..100213) Staphylococcus carnosus subsp. carnosus TM300 7549831 YP_002633202.1 CDS Sca_0103 NC_012121.1 100210 101322 R putative membrane protein; Hypothetical protein; hypothetical protein complement(100210..101322) Staphylococcus carnosus subsp. carnosus TM300 7549832 YP_002633203.1 CDS gltC NC_012121.1 101542 102426 R InterPro: LysR substrate binding domain,HTH motif; Hypothetical protein; putative transcription activator of glutamate synthase operon complement(101542..102426) Staphylococcus carnosus subsp. carnosus TM300 7549833 YP_002633204.1 CDS gltB NC_012121.1 102568 107061 D (P39812) Glutamate synthase [NADPH] large chain (EC 1.4.1.13) (NADPH-GOGAT),InterPro: Glutamate synthase amidotransferase domain; Hypothetical protein; glutamate synthase large subunit 102568..107061 Staphylococcus carnosus subsp. carnosus TM300 7551648 YP_002633205.1 CDS gltD NC_012121.1 107084 108556 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 107084..108556 Staphylococcus carnosus subsp. carnosus TM300 7551647 YP_002633206.1 CDS Sca_0107 NC_012121.1 108983 109384 D (Q55595) Probable lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; putative lyase 108983..109384 Staphylococcus carnosus subsp. carnosus TM300 7552248 YP_002633207.1 CDS Sca_0108 NC_012121.1 109544 110230 D similar to N-terminal part (aa 1-227) of phosphotransferase system trehalose-specific enzyme IIBC component [Staphylococcus saprophyticus subsp. saprophyticus ATCC (YP_302372): 475 aa,InterPro: Phosphotransferase system PTS EIIB domain; Hypothetical protein; PTS system sugar-specific IIBC component (fragment 1) 109544..110230 Staphylococcus carnosus subsp. carnosus TM300 7549834 YP_002633208.1 CDS Sca_0109 NC_012121.1 110297 110971 D similar to C-terminal part (aa 229-474) of phosphotransferase system trehalose-specific enzyme IIBC component [Staphylococcus saprophyticus subsp. saprophyticus ATCC (YP_302372): 475 aa; Hypothetical protein; PTS system sugar-specific IIBC component (fragment 2) 110297..110971 Staphylococcus carnosus subsp. carnosus TM300 7549835 YP_002633209.1 CDS treC NC_012121.1 111107 112744 D (P39795) Trehalose-6-phosphate hydrolase (EC 3.2.1.93) (Alphaalpha-phosphotrehalase),InterPro: Alpha amylase catalytic domain,Alpha amylase catalytic subdomain; Hypothetical protein; trehalose-6-phosphate hydrolase 111107..112744 Staphylococcus carnosus subsp. carnosus TM300 7549836 YP_002633210.1 CDS Sca_0111 NC_012121.1 112771 113493 D (P39796) Trehalose operon transcriptional repressor,InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; putative trehalose operon transcriptional regulator 112771..113493 Staphylococcus carnosus subsp. carnosus TM300 7552197 YP_002633211.1 CDS Sca_0113 NC_012121.1 113623 113898 D (P30338) Arsenical resistance operon repressor,InterPro: Bacterial regulatory protein ArsR family; Hypothetical protein; ArsR family transcription regulator 113623..113898 Staphylococcus carnosus subsp. carnosus TM300 7549837 YP_002633212.1 CDS Sca_0114 NC_012121.1 113912 114583 D Hypothetical protein; hypothetical protein 113912..114583 Staphylococcus carnosus subsp. carnosus TM300 7549838 YP_002633213.1 CDS Sca_0115 NC_012121.1 115096 116004 R (P37499) Putative HTH-type transcriptional regulator yybE,InterPro: LysR substrate binding domain; Hypothetical protein; LysR family transcriptional regulator complement(115096..116004) Staphylococcus carnosus subsp. carnosus TM300 7549839 YP_002633214.1 CDS Sca_0116 NC_012121.1 116135 117325 D TMHMM: TMHelix ,InterPro: General substrate transporter; Hypothetical protein; putative transporter protein 116135..117325 Staphylococcus carnosus subsp. carnosus TM300 7549840 YP_002633215.1 CDS Sca_0117 NC_012121.1 117369 117575 R Hypothetical protein; hypothetical protein complement(117369..117575) Staphylococcus carnosus subsp. carnosus TM300 7549841 YP_002633216.1 CDS Sca_0118 NC_012121.1 117812 118336 D (P39368) Hypothetical acetyltransferase yjhQ (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative GNAT family acetyltransferase 117812..118336 Staphylococcus carnosus subsp. carnosus TM300 7549842 YP_002633217.1 CDS dnaX NC_012121.1 118417 120168 D (P09122) DNA polymerase III subunit gamma/tau (EC 2.7.7.7),InterPro: AAA ATPase central region; Hypothetical protein; DNA polymerase III gamma and tau subunits 118417..120168 Staphylococcus carnosus subsp. carnosus TM300 7549843 YP_002633218.1 CDS Sca_0120 NC_012121.1 120372 120689 D (P17577) Hypothetical UPF0133 protein ybaB,InterPro: Conserved hypothetical protein 103; Hypothetical protein; hypothetical protein 120372..120689 Staphylococcus carnosus subsp. carnosus TM300 7551538 YP_002633219.1 CDS recR NC_012121.1 120696 121292 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 120696..121292 Staphylococcus carnosus subsp. carnosus TM300 7549844 YP_002633220.1 CDS Sca_0122 NC_012121.1 126795 128144 D InterPro: Orn/Lys/Arg decarboxylase major region; Hypothetical protein; putative Orn/Lys/Arg decarboxylase 126795..128144 Staphylococcus carnosus subsp. carnosus TM300 7551353 YP_002633221.1 CDS tmk NC_012121.1 128146 128760 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 128146..128760 Staphylococcus carnosus subsp. carnosus TM300 7549845 YP_002633222.1 CDS Sca_0124 NC_012121.1 128971 129300 D (P37538) Hypothetical protein yaaQ; Hypothetical protein; hypothetical protein 128971..129300 Staphylococcus carnosus subsp. carnosus TM300 7552191 YP_002633223.1 CDS holB NC_012121.1 129474 130400 D (P37540) DNA polymerase III delta subunit (EC 2.7.7.7),InterPro: Replication factor C conserved domain; Hypothetical protein; putative DNA polymerase III, delta' subunit 129474..130400 Staphylococcus carnosus subsp. carnosus TM300 7549846 YP_002633224.1 CDS Sca_0126 NC_012121.1 130401 131207 D (P37541) Hypothetical protein yaaT,InterPro: PSP1 C-terminal conserved region; Hypothetical protein; hypothetical protein 130401..131207 Staphylococcus carnosus subsp. carnosus TM300 7551700 YP_002633225.1 CDS Sca_0127 NC_012121.1 131222 131611 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 131222..131611 Staphylococcus carnosus subsp. carnosus TM300 7549847 YP_002633226.1 CDS Sca_0128 NC_012121.1 131700 132491 D (P37543) Hypothetical protein yabB,InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; hypothetical protein 131700..132491 Staphylococcus carnosus subsp. carnosus TM300 7549848 YP_002633227.1 CDS Sca_0129 NC_012121.1 132481 132741 D (Q9KLK4) Hypothetical UPF0213 protein VCA0739,InterPro: Excinuclease ABC C subunit N-terminal; Hypothetical protein; putative nuclease 132481..132741 Staphylococcus carnosus subsp. carnosus TM300 7549849 YP_002633228.1 CDS Sca_0130 NC_012121.1 132738 133577 D (Q9KGL2) Hypothetical UPF0011 protein BH0049,InterPro: Protein of unknown function UPF0011; Hypothetical protein; tetrapyrrole methylase 132738..133577 Staphylococcus carnosus subsp. carnosus TM300 7549850 YP_002633229.1 CDS geh' NC_012121.1 133755 135101 D (P10335) Lipase precursor (EC 3.1.1.3) (Glycerol ester hydrolase),InterPro: YSIRK Gram-positive signal peptide,Fragment 1 and 2 (Sca_0132) are similar to N- and C-terminal part of lipase gene gehWC of S. warneri (BAD90561).; Hypothetical protein; lipase (fragment 1) 133755..135101 Staphylococcus carnosus subsp. carnosus TM300 7549851 YP_002633230.1 CDS geh'' NC_012121.1 135326 136129 D (Q02510) Lipase precursor (EC 3.1.1.3) (Glycerol ester hydrolase),Fragment 1 (Sca_0131) and 2 are similar to N- and C-terminal part of lipase gene gehWC of S. warneri (BAD90561).; Hypothetical protein; lipase (fragment 2) 135326..136129 Staphylococcus carnosus subsp. carnosus TM300 7551622 YP_002633231.1 CDS Sca_0133 NC_012121.1 137310 138026 D TMHMM: TM helix; Hypothetical protein; hypothetical protein 137310..138026 Staphylococcus carnosus subsp. carnosus TM300 7551623 YP_002633232.1 CDS Sca_0134 NC_012121.1 138076 138171 D Hypothetical protein; hypothetical protein 138076..138171 Staphylococcus carnosus subsp. carnosus TM300 7549852 YP_002633233.1 CDS Sca_0135 NC_012121.1 138156 138392 D Hypothetical protein; hypothetical protein 138156..138392 Staphylococcus carnosus subsp. carnosus TM300 7549853 YP_002633234.1 CDS Sca_0136 NC_012121.1 138389 138865 D TMHMM: TM helix,According to BlastX comparison,this ORF could be elongated by about 40aa encoded by adjacent frame-shifted ORF.; Hypothetical protein; hypothetical protein 138389..138865 Staphylococcus carnosus subsp. carnosus TM300 7549854 YP_002633235.1 CDS Sca_0137 NC_012121.1 139012 139383 D Hypothetical protein; hypothetical protein 139012..139383 Staphylococcus carnosus subsp. carnosus TM300 7549855 YP_002633236.1 CDS Sca_0138 NC_012121.1 139741 140397 D (P26946) Hypothetical ABC transporter ATP-binding protein,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein 139741..140397 Staphylococcus carnosus subsp. carnosus TM300 7549856 YP_002633237.1 CDS Sca_0139 NC_012121.1 140407 141084 D Hypothetical protein; putative ABC transporter permease 140407..141084 Staphylococcus carnosus subsp. carnosus TM300 7549857 YP_002633238.1 CDS metS NC_012121.1 141353 143356 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 141353..143356 Staphylococcus carnosus subsp. carnosus TM300 7549858 YP_002633239.1 CDS Sca_0141 NC_012121.1 143564 144337 D (P37545) Putative deoxyribonuclease yabD (EC 3.1.21.-),InterPro: TatD-related deoxyribonuclease; Hypothetical protein; putative TatD-related deoxyribonuclease 143564..144337 Staphylococcus carnosus subsp. carnosus TM300 7551781 YP_002633240.1 CDS Sca_0142 NC_012121.1 145136 145687 D (P37547) Hypothetical protein yabF,InterPro: Primase-related protein,contains helix-turn-helix motif; Hypothetical protein; putative Primase-like protein 145136..145687 Staphylococcus carnosus subsp. carnosus TM300 7549859 YP_002633241.1 CDS ksgA NC_012121.1 145689 146579 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 145689..146579 Staphylococcus carnosus subsp. carnosus TM300 7549860 YP_002633242.1 CDS Sca_0144 NC_012121.1 146679 146942 D (P37466) Veg protein; Hypothetical protein; hypothetical protein 146679..146942 Staphylococcus carnosus subsp. carnosus TM300 7549861 YP_002633243.1 CDS Sca_0145 NC_012121.1 147402 148172 D (Q8CQU6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) (CMK) (4-(cytidine-5-diphospho)-2-C-methyl-D-erythritol kinase),InterPro: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Hypothetical protein; GHMP kinase family protein 147402..148172 Staphylococcus carnosus subsp. carnosus TM300 7549862 YP_002633244.1 CDS purR NC_012121.1 148189 149013 D (P37551) Pur operon repressor,InterPro: Phosphoribosyltransferase; Hypothetical protein; pur operon repressor 148189..149013 Staphylococcus carnosus subsp. carnosus TM300 7549863 YP_002633245.1 CDS Sca_0147 NC_012121.1 149032 149412 D (P37552) UPF0076 protein yabJ (purine regulatory protein),InterPro: YjgF-like protein,Interpro: Endoribonuclease L-PSP; Hypothetical protein; putative purine regulatory protein 149032..149412 Staphylococcus carnosus subsp. carnosus TM300 7551983 YP_002633246.1 CDS spoVG NC_012121.1 149479 149802 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 149479..149802 Staphylococcus carnosus subsp. carnosus TM300 7549864 YP_002633247.1 CDS glmU NC_012121.1 150051 151415 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 150051..151415 Staphylococcus carnosus subsp. carnosus TM300 7552140 YP_002633248.1 CDS prs NC_012121.1 151519 152484 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 151519..152484 Staphylococcus carnosus subsp. carnosus TM300 7551614 YP_002633249.1 CDS rplY NC_012121.1 152742 153386 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 152742..153386 Staphylococcus carnosus subsp. carnosus TM300 7551963 YP_002633250.1 CDS pth NC_012121.1 153873 154445 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 153873..154445 Staphylococcus carnosus subsp. carnosus TM300 7552061 YP_002633251.1 CDS mfd NC_012121.1 154442 157960 D (P37474) Transcription-repair coupling factor (TRCF),InterPro: Transcription-repair coupling factor; Hypothetical protein; putative transcription-repair coupling factor 154442..157960 Staphylococcus carnosus subsp. carnosus TM300 7551968 YP_002633252.1 CDS Sca_0154 NC_012121.1 157950 159488 D (P37555) Hypothetical protein yabM,InterPro: Polysaccharide biosynthesis protein; Hypothetical protein; putative polysaccharide biosynthesis protein 157950..159488 Staphylococcus carnosus subsp. carnosus TM300 7551782 YP_002633253.1 CDS Sca_0155 NC_012121.1 159485 160681 D InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase,InterPro: MazG family protein; Hypothetical protein; MazG-like domain-containing protein 159485..160681 Staphylococcus carnosus subsp. carnosus TM300 7549865 YP_002633254.1 CDS Sca_0156 NC_012121.1 160683 160949 D InterPro: RNA-binding S4; Hypothetical protein; hypothetical protein 160683..160949 Staphylococcus carnosus subsp. carnosus TM300 7549866 YP_002633255.1 CDS Sca_0157 NC_012121.1 160951 161217 D (P37557) Hypothetical protein yabO,InterPro: RNA-binding S4; Hypothetical protein; protein with S4 domain 160951..161217 Staphylococcus carnosus subsp. carnosus TM300 7549867 YP_002633256.1 CDS Sca_0158 NC_012121.1 161232 161603 D (P37471) Cell division protein divIC,InterPro: Septum formation initiator; Hypothetical protein; putative cell division protein 161232..161603 Staphylococcus carnosus subsp. carnosus TM300 7549868 YP_002633257.1 CDS Sca_0159 NC_012121.1 161738 162148 D (P37560) Hypothetical protein yabR,InterPro: RNA binding S1; Hypothetical protein; hypothetical protein 161738..162148 Staphylococcus carnosus subsp. carnosus TM300 7549869 YP_002633258.1 CDS Sca_0160 NC_012121.1 162400 163680 D (P37563) Hypothetical UPF0072 protein yacA,InterPro: Protein of unknown function UPF0021,Pfam: PP-loop family; Hypothetical protein; putative PP-loop family protein 162400..163680 Staphylococcus carnosus subsp. carnosus TM300 7549870 YP_002633259.1 CDS hpt NC_012121.1 163683 164228 D (Q8CQV4) Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) (HGPRT) (HGPRTase),InterPro: Hypoxanthine phosphoribosyl transferase; Hypothetical protein; putative hypoxanthine-guanine phosphoribosyltransferase 163683..164228 Staphylococcus carnosus subsp. carnosus TM300 7549871 YP_002633260.1 CDS ftsH NC_012121.1 164345 166447 D (P37476) Cell division protein ftsH homolog (EC 3.4.24.-),InterPro: ATP-dependent metalloprotease FtsH; Hypothetical protein; ATP-dependent metalloprotease FtsH 164345..166447 Staphylococcus carnosus subsp. carnosus TM300 7551703 YP_002633261.1 CDS hslO NC_012121.1 166601 167485 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 166601..167485 Staphylococcus carnosus subsp. carnosus TM300 7551596 YP_002633262.1 CDS cysK NC_012121.1 167770 168705 D (Q8CMT6) Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase),InterPro: Cysteine synthase K/M,Cysteine synthase K; Hypothetical protein; cysteine synthase 167770..168705 Staphylococcus carnosus subsp. carnosus TM300 7551707 YP_002633263.1 CDS folP NC_012121.1 168847 169632 D (Q8NXZ2) Dihydropteroate synthase (EC 2.5.1.15) (Dihydropteroate pyrophosphorylase) (DHPS),InterPro: Dihydropteroate synthase; Hypothetical protein; dihydropteroate synthase chain A synthetase 168847..169632 Staphylococcus carnosus subsp. carnosus TM300 7551506 YP_002633264.1 CDS folB NC_012121.1 169629 170003 D (Q8CMT8) Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA),InterPro: Dihydroneopterin aldolase; Hypothetical protein; 7,8-dihydroneopterin aldolase 169629..170003 Staphylococcus carnosus subsp. carnosus TM300 7551590 YP_002633265.1 CDS folK NC_012121.1 169996 170478 D Hypothetical protein; 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokin a se 169996..170478 Staphylococcus carnosus subsp. carnosus TM300 7551585 YP_002633266.1 CDS dus1 NC_012121.1 170502 171497 D (P37567) Probable tRNA-dihydrouridine synthase 1 (EC 1.-.-.-),InterPro: Putative TIM-barrel protein nifR3; Hypothetical protein; putative tRNA-dihydrouridine synthase 1 170502..171497 Staphylococcus carnosus subsp. carnosus TM300 7551589 YP_002633267.1 CDS lysS NC_012121.1 171510 173003 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 171510..173003 Staphylococcus carnosus subsp. carnosus TM300 7551543 YP_002633268.1 CDS Sca_0170 NC_012121.1 179440 180606 R (P77389) Hypothetical transport protein ydhP,InterPro: Major facilitator superfamily; Hypothetical protein; putative sugar transport protein complement(179440..180606) Staphylococcus carnosus subsp. carnosus TM300 7551354 YP_002633269.1 CDS Sca_0171 NC_012121.1 180835 181314 R InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative GNAT family acetyltransferase complement(180835..181314) Staphylococcus carnosus subsp. carnosus TM300 7549872 YP_002633270.1 CDS Sca_0172 NC_012121.1 181329 182699 R (P49309) Probable rhizopine catabolism regulatory protein mocR,InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; GntR family transcriptional regulator complement(181329..182699) Staphylococcus carnosus subsp. carnosus TM300 7549873 YP_002633271.1 CDS pdx1 NC_012121.1 182797 183684 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 182797..183684 Staphylococcus carnosus subsp. carnosus TM300 7549874 YP_002633272.1 CDS Sca_0174 NC_012121.1 183686 184264 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 183686..184264 Staphylococcus carnosus subsp. carnosus TM300 7551921 YP_002633273.1 CDS Sca_0175 NC_012121.1 184294 184791 R (Q47158) Hypothetical acetyltransferase yafP (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative GNAT family acetyltransferase complement(184294..184791) Staphylococcus carnosus subsp. carnosus TM300 7549875 YP_002633274.1 CDS Sca_0176 NC_012121.1 184812 185255 R Hypothetical protein; hypothetical protein complement(184812..185255) Staphylococcus carnosus subsp. carnosus TM300 7549876 YP_002633275.1 CDS nupC NC_012121.1 185426 186637 R (O00337) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) (hCNT1),InterPro: Na+ dependent nucleoside transporter,TMHMM: TM helix; Hypothetical protein; pyrimidine nucleoside transport protein complement(185426..186637) Staphylococcus carnosus subsp. carnosus TM300 7549877 YP_002633276.1 CDS ctsR NC_012121.1 186810 187271 D (P37568) Transcriptional regulator ctsR,InterPro: Firmicute transcriptional repressor of class III stress genes,contains helix turn helix motif; Hypothetical protein; transcription repressor of class III stress genes 186810..187271 Staphylococcus carnosus subsp. carnosus TM300 7551872 YP_002633277.1 CDS Sca_0179 NC_012121.1 187290 187814 D Hypothetical protein; hypothetical protein 187290..187814 Staphylococcus carnosus subsp. carnosus TM300 7551490 YP_002633278.1 CDS Sca_0180 NC_012121.1 187819 188823 D (Q8CTU5) Hypothetical ATP:guanido phosphotransferase SE0286 (EC 2.7.3.-),InterPro: ATP:guanido phosphotransferase; Hypothetical protein; ATP:guanido phosphotransferase 187819..188823 Staphylococcus carnosus subsp. carnosus TM300 7549878 YP_002633279.1 CDS clpC NC_012121.1 188835 191300 D (P37571) Negative regulator of genetic competence clpC/mecB,InterPro: AAA ATPase central region; Hypothetical protein; ClpC ATPase family protein 188835..191300 Staphylococcus carnosus subsp. carnosus TM300 7549879 YP_002633280.1 CDS radA NC_012121.1 191563 192933 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 191563..192933 Staphylococcus carnosus subsp. carnosus TM300 7551473 YP_002633281.1 CDS Sca_0183 NC_012121.1 192964 194022 D (Q06754) Hypothetical protein yacL,InterPro: PilT protein N-terminal; Hypothetical protein; putative membrane domain of (PIN domain superfamily) 192964..194022 Staphylococcus carnosus subsp. carnosus TM300 7552006 YP_002633282.1 CDS gltX NC_012121.1 194316 195770 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 194316..195770 Staphylococcus carnosus subsp. carnosus TM300 7549880 YP_002633283.1 CDS cysE NC_012121.1 196061 196702 D (Q8CTU2) Serine acetyltransferase (EC 2.3.1.30) (SAT),InterPro: Serine O-acetyltransferase; Hypothetical protein; serine acetyltransferase 196061..196702 Staphylococcus carnosus subsp. carnosus TM300 7551651 YP_002633284.1 CDS cysS NC_012121.1 196686 198086 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 196686..198086 Staphylococcus carnosus subsp. carnosus TM300 7551501 YP_002633285.1 CDS Sca_0187 NC_012121.1 198079 198480 D (Q05370) Hypothetical 16.3 kDa protein in atpI 5region (URF4),InterPro: Uncharacterised conserved protein UCP005520; Hypothetical protein; hypothetical protein 198079..198480 Staphylococcus carnosus subsp. carnosus TM300 7551508 YP_002633286.1 CDS spoU NC_012121.1 198480 199229 D (Q06753) Hypothetical tRNA/rRNA methyltransferase yacO (EC 2.1.1.-),InterPro: RNA methyltransferase TrmH group 3; Hypothetical protein; putative rRNA methyltransferase 198480..199229 Staphylococcus carnosus subsp. carnosus TM300 7549881 YP_002633287.1 CDS Sca_0189 NC_012121.1 199233 199757 D (P37574) Hypothetical protein yacP; Hypothetical protein; hypothetical protein 199233..199757 Staphylococcus carnosus subsp. carnosus TM300 7552139 YP_002633288.1 CDS sigH NC_012121.1 199829 200413 D (P17869) RNA polymerase sigma-H factor (Sigma-30),InterPro: Sigma-70 region 2; Hypothetical protein; putative RNA polymerase sigma-H factor 199829..200413 Staphylococcus carnosus subsp. carnosus TM300 7549882 YP_002633289.1 CDS secE NC_012121.1 200720 200917 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 200720..200917 Staphylococcus carnosus subsp. carnosus TM300 7552131 YP_002633290.1 CDS nusG NC_012121.1 200938 201486 D Hypothetical protein; transcription antitermination protein 200938..201486 Staphylococcus carnosus subsp. carnosus TM300 7552122 YP_002633291.1 CDS rplK NC_012121.1 201669 202091 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 201669..202091 Staphylococcus carnosus subsp. carnosus TM300 7551875 YP_002633292.1 CDS rplA NC_012121.1 202297 202992 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 202297..202992 Staphylococcus carnosus subsp. carnosus TM300 7552048 YP_002633293.1 CDS rplJ NC_012121.1 203332 203832 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 203332..203832 Staphylococcus carnosus subsp. carnosus TM300 7552040 YP_002633294.1 CDS rplL NC_012121.1 203873 204238 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 203873..204238 Staphylococcus carnosus subsp. carnosus TM300 7552047 YP_002633295.1 CDS Sca_0197 NC_012121.1 204499 205104 D (P37872) Hypothetical protein ybxB (P23) (ORF23),InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; putative rRNA methylase 204499..205104 Staphylococcus carnosus subsp. carnosus TM300 7552049 YP_002633296.1 CDS Sca_0198 NC_012121.1 205159 205296 R Hypothetical protein; hypothetical protein complement(205159..205296) Staphylococcus carnosus subsp. carnosus TM300 7549883 YP_002633297.1 CDS rpoB NC_012121.1 205325 208876 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 205325..208876 Staphylococcus carnosus subsp. carnosus TM300 7549884 YP_002633298.1 CDS rpoC NC_012121.1 209058 212696 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 209058..212696 Staphylococcus carnosus subsp. carnosus TM300 7552073 YP_002633299.1 CDS Sca_0201 NC_012121.1 212879 213043 D TMHMM: TM helix; Hypothetical protein; hypothetical protein 212879..213043 Staphylococcus carnosus subsp. carnosus TM300 7552074 YP_002633300.1 CDS Sca_0202 NC_012121.1 213019 213201 D Hypothetical protein; hypothetical protein 213019..213201 Staphylococcus carnosus subsp. carnosus TM300 7549885 YP_002633301.1 CDS Sca_0203 NC_012121.1 213403 213657 D in Bacillus subtilis this non-essential protein associates with the ribosome; putative ribosomal protein L7Ae-like 213403..213657 Staphylococcus carnosus subsp. carnosus TM300 7549886 YP_002633302.1 CDS rpsL NC_012121.1 213753 214166 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 213753..214166 Staphylococcus carnosus subsp. carnosus TM300 7549887 YP_002633303.1 CDS rpsG NC_012121.1 214237 214707 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 214237..214707 Staphylococcus carnosus subsp. carnosus TM300 7552085 YP_002633304.1 CDS fusA NC_012121.1 214821 216902 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 214821..216902 Staphylococcus carnosus subsp. carnosus TM300 7552080 YP_002633305.1 CDS tufA NC_012121.1 217092 218279 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 217092..218279 Staphylococcus carnosus subsp. carnosus TM300 7551602 YP_002633306.1 CDS Sca_0208 NC_012121.1 218561 219577 R (P37112) N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) (L-aminoacylase),InterPro: Peptidase M20/M25/M40; Hypothetical protein; putative peptidase complement(218561..219577) Staphylococcus carnosus subsp. carnosus TM300 7552273 YP_002633307.1 CDS kbl NC_012121.1 219773 220960 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 219773..220960 Staphylococcus carnosus subsp. carnosus TM300 7549888 YP_002633308.1 CDS Sca_0210 NC_012121.1 221074 222072 R (P54948) Hypothetical protein yxeI,InterPro: Choloylglycine hydrolase; Hypothetical protein; Choloylglycine hydrolase family protein complement(221074..222072) Staphylococcus carnosus subsp. carnosus TM300 7551727 YP_002633309.1 CDS Sca_0211 NC_012121.1 222170 222673 D InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative GNAT family acetyltransferase 222170..222673 Staphylococcus carnosus subsp. carnosus TM300 7549889 YP_002633310.1 CDS Sca_0212 NC_012121.1 222688 223149 D (Q58604) Hypothetical acetyltransferase MJ1207 (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative GNAT family acetyltransferase 222688..223149 Staphylococcus carnosus subsp. carnosus TM300 7549890 YP_002633311.1 CDS Sca_0213 NC_012121.1 223359 224321 D (P44094) Hypothetical protein HI1014; Hypothetical protein; NAD dependent epimerase/dehydratase family protein 223359..224321 Staphylococcus carnosus subsp. carnosus TM300 7549891 YP_002633312.1 CDS Sca_0214 NC_012121.1 224510 225547 D (O31020) Hypothetical protein VCA0337,InterPro: Protein of unknow function UPF0094; Hypothetical protein; LD-carboxypeptidase family protein 224510..225547 Staphylococcus carnosus subsp. carnosus TM300 7549892 YP_002633313.1 CDS ilvE NC_012121.1 225769 226848 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 225769..226848 Staphylococcus carnosus subsp. carnosus TM300 7549893 YP_002633314.1 CDS Sca_0216 NC_012121.1 227003 227392 D (P45808) Hypothetical protein ybaN,InterPro: Protein of unknown function DUF454; Hypothetical protein; hypothetical protein 227003..227392 Staphylococcus carnosus subsp. carnosus TM300 7551718 YP_002633315.1 CDS Sca_0217 NC_012121.1 227536 228255 D (Q8DCT7) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP),InterPro: Haloacid dehalogenase-like hydrolase; Hypothetical protein; putative haloacid dehalogenase-like hydrolase 227536..228255 Staphylococcus carnosus subsp. carnosus TM300 7549894 YP_002633316.1 CDS Sca_0218 NC_012121.1 228296 228703 D Hypothetical protein; hypothetical protein 228296..228703 Staphylococcus carnosus subsp. carnosus TM300 7549895 YP_002633317.1 CDS Sca_0219 NC_012121.1 228726 229544 D (P44447) Protein HI0003,InterPro: HAD-superfamily hydrolase subfamily IIB; Hypothetical protein; HAD superfamily hydrolase 228726..229544 Staphylococcus carnosus subsp. carnosus TM300 7549896 YP_002633318.1 CDS Sca_0220 NC_012121.1 229586 230248 R (P37529) Hypothetical protein yaaF,InterPro: Deoxynucleoside kinase; Hypothetical protein; putative deoxynucleoside kinase complement(229586..230248) Staphylococcus carnosus subsp. carnosus TM300 7549897 YP_002633319.1 CDS Sca_0221 NC_012121.1 230241 230858 R (P37530) Hypothetical protein yaaG,InterPro: Deoxynucleoside kinase; Hypothetical protein; putative deoxynucleoside kinase complement(230241..230858) Staphylococcus carnosus subsp. carnosus TM300 7549898 YP_002633320.1 CDS Sca_0222 NC_012121.1 230924 231403 D (P30134) Hypothetical protein yfhC,InterPro: Cytidine/deoxycytidylate deaminase zinc-binding region; Hypothetical protein; putative deaminase 230924..231403 Staphylococcus carnosus subsp. carnosus TM300 7549899 YP_002633321.1 CDS Sca_0223 NC_012121.1 231618 232496 D (P42962) Hypothetical protein ycsE,InterPro: Cof protein; Hypothetical protein; putative haloacid dehalogenase-like hydrolase 231618..232496 Staphylococcus carnosus subsp. carnosus TM300 7549900 YP_002633322.1 CDS Sca_0224 NC_012121.1 232563 233129 D (O31038) FMN reductase (EC 1.5.1.29),InterPro: NADPH-dependent FMN reductase; Hypothetical protein; putative flavoprotein 232563..233129 Staphylococcus carnosus subsp. carnosus TM300 7549901 YP_002633323.1 CDS Sca_0225 NC_012121.1 233277 233822 R (P42404) Hypothetical protein yckF,InterPro: Sugar isomerase (SIS); Hypothetical protein; putative sugar phosphate isomerase complement(233277..233822) Staphylococcus carnosus subsp. carnosus TM300 7549902 YP_002633324.1 CDS Sca_0226 NC_012121.1 233824 234456 R (P39304) Probable hexulose-6-phosphate synthase (EC 4.1.2.-) (HUMPS) (D-arabino 3-hexulose 6-phosphate formaldehyde lyase),InterPro: Orotidine 5-phosphate decarboxylase; Hypothetical protein; putative hexulose-6-phosphate synthase complement(233824..234456) Staphylococcus carnosus subsp. carnosus TM300 7549903 YP_002633325.1 CDS nagB NC_012121.1 234548 235291 R (Q8R5T0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase),InterPro: Glucosamine-6-phosphate isomerase; Hypothetical protein; putative glucosamine-6-phosphate isomerase complement(234548..235291) Staphylococcus carnosus subsp. carnosus TM300 7549904 YP_002633326.1 CDS Sca_0228 NC_012121.1 235961 236320 D Hypothetical protein; hypothetical protein 235961..236320 Staphylococcus carnosus subsp. carnosus TM300 7551843 YP_002633327.1 CDS Sca_0229 NC_012121.1 236333 236998 D (P42981) Hypothetical protein ypjG,InterPro: LmbE-like protein (Although most of the proteins in this group are of unknown function one, from Schizosaccharomyces pombe, has been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase.); Hypothetical protein; putative LmbE-like protein family protein 236333..236998 Staphylococcus carnosus subsp. carnosus TM300 7549905 YP_002633328.1 CDS Sca_0230 NC_012121.1 237015 237893 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 237015..237893 Staphylococcus carnosus subsp. carnosus TM300 7549906 YP_002633329.1 CDS proP NC_012121.1 238382 239821 D (P30848) Proline/betaine transporter (Proline porter II) (PPII),InterPro: General substrate transporter; Hypothetical protein; proline/betaine transporter 238382..239821 Staphylococcus carnosus subsp. carnosus TM300 7549907 YP_002633330.1 CDS thiD NC_012121.1 240464 241294 R (Q8CTQ7) Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate kinase) (HMP-P kinase),InterPro: Phosphomethylpyrimidine kinase; Hypothetical protein; putative phosphomethylpyrimidine kinase complement(240464..241294) Staphylococcus carnosus subsp. carnosus TM300 7551961 YP_002633331.1 CDS ung NC_012121.1 241485 242150 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 241485..242150 Staphylococcus carnosus subsp. carnosus TM300 7552176 YP_002633332.1 CDS Sca_0234 NC_012121.1 242143 242532 D Hypothetical protein; hypothetical protein 242143..242532 Staphylococcus carnosus subsp. carnosus TM300 7552280 YP_002633333.1 CDS Sca_0235 NC_012121.1 242617 243000 D (P45019) Hypothetical protein HI1073,InterPro: Protein of unknown function DUF423; Hypothetical protein; hypothetical protein 242617..243000 Staphylococcus carnosus subsp. carnosus TM300 7549908 YP_002633334.1 CDS Sca_0236 NC_012121.1 243067 244590 D (O60170) Probable amino-acid permease meu22 (Meiotic expression up-regulated protein 22),InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid permease 243067..244590 Staphylococcus carnosus subsp. carnosus TM300 7549909 YP_002633335.1 CDS apl NC_012121.1 244893 245516 D (Q48630) Alkaline phosphatase like protein,InterPro: DedA family; Hypothetical protein; alkaline phosphatase like protein 244893..245516 Staphylococcus carnosus subsp. carnosus TM300 7549910 YP_002633336.1 CDS Sca_0238 NC_012121.1 245690 246481 R Hypothetical protein; hypothetical protein complement(245690..246481) Staphylococcus carnosus subsp. carnosus TM300 7551396 YP_002633337.1 CDS Sca_0239 NC_012121.1 246671 247135 R (P44520) Hypothetical protein HI0108; Hypothetical protein; hypothetical protein complement(246671..247135) Staphylococcus carnosus subsp. carnosus TM300 7549911 YP_002633338.1 CDS Sca_0240 NC_012121.1 247146 247928 R (P39402) Hypothetical protein yjjP; Hypothetical protein; hypothetical protein complement(247146..247928) Staphylococcus carnosus subsp. carnosus TM300 7549912 YP_002633339.1 CDS Sca_0241 NC_012121.1 249347 250096 R (P39645) Hypothetical protein ywfI,pfam06778,Chlor_dismutase, Chlorite dismutase. This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyses the disproportionation of chlorite into chloride and oxygen. Note that many family members are hypothetical proteins.; Hypothetical protein; putative heme peroxidase complement(249347..250096) Staphylococcus carnosus subsp. carnosus TM300 7549913 YP_002633340.1 CDS eutD NC_012121.1 250258 251247 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 250258..251247 Staphylococcus carnosus subsp. carnosus TM300 7549914 YP_002633341.1 CDS lplA NC_012121.1 251247 252086 D (P39648) Hypothetical protein ywfL,InterPro: Biotin/lipoate A/B protein ligase domain; Hypothetical protein; putative lipoate protein ligase 251247..252086 Staphylococcus carnosus subsp. carnosus TM300 7551967 YP_002633342.1 CDS mvaK1 NC_012121.1 252521 253444 D (Q9V187) Mevalonate kinase (EC 2.7.1.36) (MK),InterPro: GHMP kinase; Hypothetical protein; mevalonate kinase 252521..253444 Staphylococcus carnosus subsp. carnosus TM300 7551754 YP_002633343.1 CDS mvaD NC_012121.1 253451 254446 D (Q99JF5) Diphosphomevalonate decarboxylase (EC 4.1.1.33) (Mevalonate pyrophosphate decarboxylase) (Mevalonate (diphospho)decarboxylase),InterPro: Diphosphomevalonate decarboxylase; Hypothetical protein; mevalonate diphosphate decarboxylase 253451..254446 Staphylococcus carnosus subsp. carnosus TM300 7551834 YP_002633344.1 CDS mvaK2 NC_012121.1 254443 255519 D (Q9V187) Mevalonate kinase (EC 2.7.1.36) (MK),InterPro: Gram positive phosphomevalonate kinase; Hypothetical protein; phosphomevalonate kinase 254443..255519 Staphylococcus carnosus subsp. carnosus TM300 7551833 YP_002633345.1 CDS Sca_0247 NC_012121.1 255730 256074 D Hypothetical protein; hypothetical protein 255730..256074 Staphylococcus carnosus subsp. carnosus TM300 7551835 YP_002633346.1 CDS Sca_0248 NC_012121.1 256342 256575 R Hypothetical protein; hypothetical protein complement(256342..256575) Staphylococcus carnosus subsp. carnosus TM300 7549915 YP_002633347.1 CDS Sca_0249 NC_012121.1 256846 257412 D (P43340) Putative NAD(P)H oxidoreductase ycaK (EC 1.6.99.-); Hypothetical protein; putative multimeric flavodoxin WrbA family protein 256846..257412 Staphylococcus carnosus subsp. carnosus TM300 7549916 YP_002633348.1 CDS Sca_0250 NC_012121.1 257624 258100 D InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative acetyltransferase 257624..258100 Staphylococcus carnosus subsp. carnosus TM300 7549917 YP_002633349.1 CDS Sca_0251 NC_012121.1 258143 259441 D (P39651) Hypothetical protein ywfO,InterPro: Metal-dependent phosphohydrolase HD region; Hypothetical protein; putative phosphohydrolase 258143..259441 Staphylococcus carnosus subsp. carnosus TM300 7549918 YP_002633350.1 CDS Sca_0252 NC_012121.1 259510 260022 D Hypothetical protein; hypothetical protein 259510..260022 Staphylococcus carnosus subsp. carnosus TM300 7549919 YP_002633351.1 CDS Sca_0253 NC_012121.1 260206 260823 R (P70775) Hypothetical protein yggA,InterPro: Lysine exporter protein (LYSE/YGGA); Hypothetical protein; putative LysE type translocator protein complement(260206..260823) Staphylococcus carnosus subsp. carnosus TM300 7549920 YP_002633352.1 CDS Sca_0254 NC_012121.1 261573 262985 D (P77730) Hypothetical protein ydcR,InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; GntR family transcriptional regulator 261573..262985 Staphylococcus carnosus subsp. carnosus TM300 7549921 YP_002633353.1 CDS Sca_0255 NC_012121.1 263325 263573 D (Q9Z4V7) Hypothetical protein SCO2235 (ORFU1E),InterPro: Protein of unknown function DUF172; Hypothetical protein; hypothetical protein 263325..263573 Staphylococcus carnosus subsp. carnosus TM300 7549922 YP_002633354.1 CDS Sca_0256 NC_012121.1 263566 263835 D (P56605) Hypothetical protein yoeB; Hypothetical protein; hypothetical protein 263566..263835 Staphylococcus carnosus subsp. carnosus TM300 7549923 YP_002633355.1 CDS Sca_0257 NC_012121.1 264322 265512 D (P54970) IAA-amino acid hydrolase homolog 2 precursor,InterPro: Peptidase M20/M25/M40; Hypothetical protein; putative peptidase 264322..265512 Staphylococcus carnosus subsp. carnosus TM300 7549924 YP_002633356.1 CDS Sca_0258 NC_012121.1 265673 266089 D Hypothetical protein; hypothetical protein 265673..266089 Staphylococcus carnosus subsp. carnosus TM300 7549925 YP_002633357.1 CDS argS NC_012121.1 266091 267755 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 266091..267755 Staphylococcus carnosus subsp. carnosus TM300 7549926 YP_002633358.1 CDS Sca_0260 NC_012121.1 267887 268789 D (Q8ZRP7) Vitamin B12 transport protein btuF precursor,InterPro: Periplasmic binding protein; Hypothetical protein; putative lipoprotein involved in iron transport 267887..268789 Staphylococcus carnosus subsp. carnosus TM300 7551416 YP_002633359.1 CDS Sca_0261 NC_012121.1 268795 269733 D (Q57552) Putative ABC transporter permease protein MJ0087,InterPro: FecCD transport family; Hypothetical protein; FecCD transport family protein 268795..269733 Staphylococcus carnosus subsp. carnosus TM300 7549927 YP_002633360.1 CDS Sca_0262 NC_012121.1 269813 270556 D (Q9V1B3) Putative HAD-hydrolase PYRAB05140 (EC 3.-.-.-),InterPro: Haloacid dehalogenase-like hydrolase; Hypothetical protein; haloacid dehalogenase-like hydrolase family protein 269813..270556 Staphylococcus carnosus subsp. carnosus TM300 7549928 YP_002633361.1 CDS Sca_0263 NC_012121.1 270531 271358 D (P47229) 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate hydrolase (EC 3.7.1.-),InterPro: Alpha/beta hydrolase fold; Hypothetical protein; putative alpha/beta hydrolase 270531..271358 Staphylococcus carnosus subsp. carnosus TM300 7549929 YP_002633362.1 CDS Sca_0264 NC_012121.1 271524 272030 D Hypothetical protein; hypothetical protein 271524..272030 Staphylococcus carnosus subsp. carnosus TM300 7549930 YP_002633363.1 CDS Sca_0265 NC_012121.1 272152 272865 D Hypothetical protein; hypothetical protein 272152..272865 Staphylococcus carnosus subsp. carnosus TM300 7549931 YP_002633364.1 CDS sarA NC_012121.1 272966 273340 R (P35861) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2); Hypothetical protein; accessory regulator A complement(272966..273340) Staphylococcus carnosus subsp. carnosus TM300 7549932 YP_002633365.1 CDS Sca_0267 NC_012121.1 273671 274588 R Hypothetical protein; hypothetical protein complement(273671..274588) Staphylococcus carnosus subsp. carnosus TM300 7552104 YP_002633366.1 CDS Sca_0268 NC_012121.1 274708 275640 R InterPro: Protein of unknown function DUF606; Hypothetical protein; hypothetical protein complement(274708..275640) Staphylococcus carnosus subsp. carnosus TM300 7549933 YP_002633367.1 CDS Sca_0269 NC_012121.1 275884 276114 D Hypothetical protein; hypothetical protein 275884..276114 Staphylococcus carnosus subsp. carnosus TM300 7549934 YP_002633368.1 CDS Sca_0270 NC_012121.1 276159 276371 R Hypothetical protein; hypothetical protein complement(276159..276371) Staphylococcus carnosus subsp. carnosus TM300 7549935 YP_002633369.1 CDS Sca_0271 NC_012121.1 276386 276589 R Hypothetical protein; hypothetical protein complement(276386..276589) Staphylococcus carnosus subsp. carnosus TM300 7549936 YP_002633370.1 CDS Sca_0272 NC_012121.1 276957 278996 D (P32703) Putative Na(+)/H(+) exchanger yjcE,InterPro: Sodium/hydrogen exchanger; Hypothetical protein; sodium/hydrogen exchanger family protein 276957..278996 Staphylococcus carnosus subsp. carnosus TM300 7549937 YP_002633371.1 CDS Sca_0273 NC_012121.1 279254 280177 R (Q8Y653) Manganese-binding lipoprotein mntA precursor,InterPro: Periplasmic solute binding protein; Hypothetical protein; putative lipoprotein, AdhesinB family protein complement(279254..280177) Staphylococcus carnosus subsp. carnosus TM300 7549938 YP_002633372.1 CDS Sca_0274 NC_012121.1 280174 281010 R (Q92AG0) Manganese transport system membrane protein mntC,InterPro: ABC transporter family 3; Hypothetical protein; putative ABC transporter permease complement(280174..281010) Staphylococcus carnosus subsp. carnosus TM300 7549939 YP_002633373.1 CDS Sca_0275 NC_012121.1 281003 281659 R (P96117) Zinc transport system ATP-binding protein troB,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(281003..281659) Staphylococcus carnosus subsp. carnosus TM300 7549940 YP_002633374.1 CDS Sca_0276 NC_012121.1 281886 282542 D (Q92AD1) Transcriptional regulator mntR (Manganese transport regulator),InterPro: Iron dependent repressor; Hypothetical protein; putative metal dependent transcriptional regulator 281886..282542 Staphylococcus carnosus subsp. carnosus TM300 7549941 YP_002633375.1 CDS Sca_0277 NC_012121.1 282696 283400 D (P35575) Glucose-6-phosphatase (EC 3.1.3.9) (G6Pase) (G-6-Pase),InterPro: PA-phosphatase related phosphoesterase; Hypothetical protein; putative PA-phosphatase related membrane protein 282696..283400 Staphylococcus carnosus subsp. carnosus TM300 7549942 YP_002633376.1 CDS Sca_0278 NC_012121.1 283444 283935 R (P76112) Hypothetical acetyltransferase yncA (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative N-acetyltransferase complement(283444..283935) Staphylococcus carnosus subsp. carnosus TM300 7549943 YP_002633377.1 CDS Sca_0279 NC_012121.1 283953 284699 R Hypothetical protein; hypothetical protein complement(283953..284699) Staphylococcus carnosus subsp. carnosus TM300 7549944 YP_002633378.1 CDS maa NC_012121.1 284780 285337 R (P37515) Probable maltose O-acetyltransferase (EC 2.3.1.79) (Maltose transacetylase),InterPro: Bacterial transferase hexapeptide repeat; Hypothetical protein; putative maltose O-acetyltransferase complement(284780..285337) Staphylococcus carnosus subsp. carnosus TM300 7549945 YP_002633379.1 CDS tagA NC_012121.1 285455 286231 D (Q7MYM6) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) (UDP-ManNAcA transferase),InterPro: Glycosyl transferase WecB/TagA/CpsF family; Hypothetical protein; putative teichoic acid biosynthesis protein 285455..286231 Staphylococcus carnosus subsp. carnosus TM300 7551767 YP_002633380.1 CDS thrS NC_012121.1 286873 288780 D (P18256) Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS),InterPro: Threonyl-tRNA synthetase class IIa; Hypothetical protein; threonyl-tRNA synthetase 286873..288780 Staphylococcus carnosus subsp. carnosus TM300 7552157 YP_002633381.1 CDS Sca_0283 NC_012121.1 289006 290343 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 289006..290343 Staphylococcus carnosus subsp. carnosus TM300 7552186 YP_002633382.1 CDS Sca_0284 NC_012121.1 290357 291448 D (P37520) Hypothetical protein yyaD; Hypothetical protein; hypothetical protein 290357..291448 Staphylococcus carnosus subsp. carnosus TM300 7549946 YP_002633383.1 CDS Sca_0285 NC_012121.1 292392 292796 R (O05398) Hypothetical protein yrhF; Hypothetical protein; hypothetical protein complement(292392..292796) Staphylococcus carnosus subsp. carnosus TM300 7549947 YP_002633384.1 CDS tagH NC_012121.1 293141 293938 R with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit complement(293141..293938) Staphylococcus carnosus subsp. carnosus TM300 7549948 YP_002633385.1 CDS tagG NC_012121.1 294249 295052 D (P42953) Teichoic acid translocation permease protein tagG,InterPro: ABC transporter family 2; Hypothetical protein; teichoic acid translocation permease 294249..295052 Staphylococcus carnosus subsp. carnosus TM300 7552165 YP_002633386.1 CDS tagB NC_012121.1 295134 296228 D (Q8RKI8) Putative CDP-glycerol:glycerophosphate glycerophosphotransferase tarB (EC 2.7.8.-),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; teichoic acid biosynthesis protein B 295134..296228 Staphylococcus carnosus subsp. carnosus TM300 7552164 YP_002633387.1 CDS tagX NC_012121.1 296228 297286 D (Q48214) Putative glycosyl transferase HI1696 (EC 2.-.-.-),InterPro: Glycosyl transferase family 2; Hypothetical protein; teichoic acid biosynthesis protein X 296228..297286 Staphylococcus carnosus subsp. carnosus TM300 7552158 YP_002633388.1 CDS tagD NC_012121.1 297401 297799 D (P27623) Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39) (GCT) (Gro-PCT) (CDP-glycerol pyrophosphorylase) (Teichoic acid biosynthesis protein D),InterPro: Cytidylyltransferase; Hypothetical protein; teichoic acid biosynthesis protein D 297401..297799 Staphylococcus carnosus subsp. carnosus TM300 7552166 YP_002633389.1 CDS pbp4 NC_012121.1 297894 299183 R (Q05523) D-alanyl-D-alanine carboxypeptidase precursor (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (CPase) (PBP5),InterPro: Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Hypothetical protein; penicillin binding protein 4 complement(297894..299183) Staphylococcus carnosus subsp. carnosus TM300 7552159 YP_002633390.1 CDS Sca_0292 NC_012121.1 299414 301144 D (P97046) Multidrug resistance ABC transporter ATP-binding and permease protein,InterPro: ABC transporter transmembrane region; Hypothetical protein; ATP-binding cassette transporter A 299414..301144 Staphylococcus carnosus subsp. carnosus TM300 7551906 YP_002633391.1 CDS Sca_0293 NC_012121.1 301442 302671 D (O00337) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) (hCNT1),InterPro: Na+ dependent nucleoside transporter; Hypothetical protein; putative sodium dependent nucleoside transporter 301442..302671 Staphylococcus carnosus subsp. carnosus TM300 7549949 YP_002633392.1 CDS Sca_0294 NC_012121.1 303156 303992 D (P39803) Hypothetical protein yitT,InterPro: Protein of unknown function DUF161; Hypothetical protein; hypothetical protein 303156..303992 Staphylococcus carnosus subsp. carnosus TM300 7549950 YP_002633393.1 CDS fhuC NC_012121.1 304305 305108 D (P49938) Ferrichrome transport ATP-binding protein fhuC,InterPro: ABC transporter; Hypothetical protein; ferrichrome transport ATP-binding protein 304305..305108 Staphylococcus carnosus subsp. carnosus TM300 7549951 YP_002633394.1 CDS fhuB NC_012121.1 305119 306126 D (P49936) Ferrichrome transport system permease protein fhuB,InterPro: FecCD transport family; Hypothetical protein; ferrichrome transport permease 305119..306126 Staphylococcus carnosus subsp. carnosus TM300 7551576 YP_002633395.1 CDS fhuG NC_012121.1 306123 307139 D (P49937) Ferrichrome transport system permease protein fhuG,InterPro: FecCD transport family; Hypothetical protein; ferrichrome transport permease 306123..307139 Staphylococcus carnosus subsp. carnosus TM300 7551575 YP_002633396.1 CDS Sca_0298 NC_012121.1 307258 307758 D Hypothetical protein; hypothetical protein 307258..307758 Staphylococcus carnosus subsp. carnosus TM300 7551577 YP_002633397.1 CDS Sca_0299 NC_012121.1 308113 309180 D (P37520) Hypothetical protein yyaD; Hypothetical protein; hypothetical protein 308113..309180 Staphylococcus carnosus subsp. carnosus TM300 7549952 YP_002633398.1 CDS Sca_0300 NC_012121.1 309405 310427 D (P23872) Acetyl esterase (EC 3.1.1.-),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; putative esterase 309405..310427 Staphylococcus carnosus subsp. carnosus TM300 7549953 YP_002633399.1 CDS Sca_0301 NC_012121.1 310560 311066 R InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative N-acetyltransferase complement(310560..311066) Staphylococcus carnosus subsp. carnosus TM300 7549954 YP_002633400.1 CDS Sca_0302 NC_012121.1 311275 311955 D (O34951) Sensory transduction protein bceR,InterPro: Response regulator receiver; Hypothetical protein; putative response regulator protein 311275..311955 Staphylococcus carnosus subsp. carnosus TM300 7549955 YP_002633401.1 CDS Sca_0303 NC_012121.1 311942 312985 D (Q9K620) Sensor protein bceS (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; putative two-component sensor histidine kinase 311942..312985 Staphylococcus carnosus subsp. carnosus TM300 7549956 YP_002633402.1 CDS Sca_0304 NC_012121.1 313078 313839 D (Q9K619) Bacitracin export ATP-binding protein bceA,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein 313078..313839 Staphylococcus carnosus subsp. carnosus TM300 7549957 YP_002633403.1 CDS Sca_0305 NC_012121.1 313829 315733 D (O34741) Bacitracin export permease protein bceB,InterPro: Protein of unknown function DUF214; Hypothetical protein; putative ABC transporter permease 313829..315733 Staphylococcus carnosus subsp. carnosus TM300 7549958 YP_002633404.1 CDS Sca_0306 NC_012121.1 316127 316744 D (O34454) Hypothetical UPF0111 protein ykaA,InterPro: Protein of unknown function DUF47; Hypothetical protein; hypothetical protein 316127..316744 Staphylococcus carnosus subsp. carnosus TM300 7549959 YP_002633405.1 CDS Sca_0307 NC_012121.1 316758 317765 D (O34436) Probable low-affinity inorganic phosphate transporter,InterPro: Phosphate transporter; Hypothetical protein; putative phosphate transporter protein 316758..317765 Staphylococcus carnosus subsp. carnosus TM300 7549960 YP_002633406.1 CDS Sca_0308 NC_012121.1 317832 318665 R (Q46857) 25-diketo-D-gluconic acid reductase A (EC 1.1.1.274) (25-DKG reductase A) (25-DKGR A) (25DKGR-A) (AKR5C),InterPro: Aldo/keto reductase; Hypothetical protein; Aldo/keto reductase family protein complement(317832..318665) Staphylococcus carnosus subsp. carnosus TM300 7549961 YP_002633407.1 CDS Sca_0309 NC_012121.1 318814 319992 R (P77389) Hypothetical transport protein ydhP,InterPro: General substrate transporter; Hypothetical protein; major facilitator family protein complement(318814..319992) Staphylococcus carnosus subsp. carnosus TM300 7549962 YP_002633408.1 CDS Sca_0310 NC_012121.1 320137 320475 D (O34533) Hypothetical UPF0087 protein ytcD,InterPro: Protein of unknown function DUF24; Hypothetical protein; putative transcriptional regulator 320137..320475 Staphylococcus carnosus subsp. carnosus TM300 7549963 YP_002633409.1 CDS Sca_0311 NC_012121.1 320530 321345 R (P39046) Muramidase-2 precursor (EC 3.2.1.17) (14-beta-N-acetylmuramoylhydrolase) (Peptidoglycan hydrolase) (Pg-hydrolase-2) (Lysozyme),InterPro: CHAP; Hypothetical protein; putative peptidoglycan hydrolase complement(320530..321345) Staphylococcus carnosus subsp. carnosus TM300 7549964 YP_002633410.1 CDS Sca_0312 NC_012121.1 321693 322322 D Hypothetical protein; putative integral membrane protein that interacts with FtsH 321693..322322 Staphylococcus carnosus subsp. carnosus TM300 7549965 YP_002633411.1 CDS Sca_0313 NC_012121.1 322807 323685 D InterPro: Helix-turn-helix AraC type,This fragment is N-terminally truncated by about 60 aa which are encoded in preceding ORF (not annotated); Hypothetical protein; AraC family transcriptional regulator 322807..323685 Staphylococcus carnosus subsp. carnosus TM300 7549966 YP_002633412.1 CDS Sca_0314 NC_012121.1 323697 324011 D Hypothetical protein; AraC family transcriptional regulator 323697..324011 Staphylococcus carnosus subsp. carnosus TM300 7549967 YP_002633413.1 CDS Sca_0315 NC_012121.1 324053 324784 D Hypothetical protein; AraC family transcriptional regulator 324053..324784 Staphylococcus carnosus subsp. carnosus TM300 7549968 YP_002633414.1 CDS Sca_0316 NC_012121.1 324944 325303 D Hypothetical protein; putative MarR type transcriptional regulator 324944..325303 Staphylococcus carnosus subsp. carnosus TM300 7549969 YP_002633415.1 CDS Sca_0317 NC_012121.1 325511 326230 D (Q8CTK9) Hypothetical UPF0082 protein SE0437,InterPro: Protein of unknown function DUF28; Hypothetical protein; hypothetical protein 325511..326230 Staphylococcus carnosus subsp. carnosus TM300 7549970 YP_002633416.1 CDS Sca_0318 NC_012121.1 326232 326714 D Hypothetical protein; hypothetical protein 326232..326714 Staphylococcus carnosus subsp. carnosus TM300 7549971 YP_002633417.1 CDS Sca_0319 NC_012121.1 326944 327516 D InterPro: Protein of unknown function DUF402; Hypothetical protein; hypothetical protein 326944..327516 Staphylococcus carnosus subsp. carnosus TM300 7549972 YP_002633418.1 CDS Sca_0320 NC_012121.1 327648 328514 D (O34827) Putative HTH-type transcriptional regulator ykuM,InterPro: LysR substrate binding domain; Hypothetical protein; LysR family transcriptional regulator 327648..328514 Staphylococcus carnosus subsp. carnosus TM300 7549973 YP_002633419.1 CDS Sca_0321 NC_012121.1 328689 329885 D (P31436) Sugar efflux transporter C,InterPro: Major facilitator superfamily; Hypothetical protein; putative sugar efflux transporter 328689..329885 Staphylococcus carnosus subsp. carnosus TM300 7549974 YP_002633420.1 CDS Sca_0322 NC_012121.1 329901 330386 D (P54486) Hypothetical protein yqgC,InterPro: Protein of unknown function DUF456; Hypothetical protein; hypothetical protein 329901..330386 Staphylococcus carnosus subsp. carnosus TM300 7549975 YP_002633421.1 CDS Sca_0323 NC_012121.1 330514 331200 R (P40350) Dolichyl-phosphate beta-glucosyltransferase (EC 2.4.1.117) (DolP-glucosyltransferase); Hypothetical protein; hypothetical protein complement(330514..331200) Staphylococcus carnosus subsp. carnosus TM300 7549976 YP_002633422.1 CDS Sca_0324 NC_012121.1 331388 331831 D Hypothetical protein; hypothetical protein 331388..331831 Staphylococcus carnosus subsp. carnosus TM300 7549977 YP_002633423.1 CDS Sca_0325 NC_012121.1 331906 332217 D Hypothetical protein; hypothetical protein 331906..332217 Staphylococcus carnosus subsp. carnosus TM300 7549978 YP_002633424.1 CDS Sca_0326 NC_012121.1 332445 332990 D InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative N-acetyltransferase 332445..332990 Staphylococcus carnosus subsp. carnosus TM300 7549979 YP_002633425.1 CDS Sca_0327 NC_012121.1 333097 333669 R (P48636) Hypothetical protein PA4923,InterPro: Conserved hypothetical protein 730; Hypothetical protein; lysine decarboxlyase family protein complement(333097..333669) Staphylococcus carnosus subsp. carnosus TM300 7549980 YP_002633426.1 CDS Sca_0328 NC_012121.1 333687 334127 R (Q8CTJ9) Hypothetical UPF0178 protein SE0451,InterPro: Protein of unknown function DUF188; Hypothetical protein; hypothetical protein complement(333687..334127) Staphylococcus carnosus subsp. carnosus TM300 7549981 YP_002633427.1 CDS Sca_0329 NC_012121.1 334140 334841 R Hypothetical protein; hypothetical protein complement(334140..334841) Staphylococcus carnosus subsp. carnosus TM300 7549982 YP_002633428.1 CDS bacA NC_012121.1 335021 335911 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(335021..335911) Staphylococcus carnosus subsp. carnosus TM300 7549983 YP_002633429.1 CDS cydD NC_012121.1 336359 337999 D (P29018) Transport ATP-binding protein cydD,InterPro: ABC transporter transmembrane region; Hypothetical protein; putative cytochrome bd expression ABC transporter CydD 336359..337999 Staphylococcus carnosus subsp. carnosus TM300 7551438 YP_002633430.1 CDS cydC NC_012121.1 337996 339681 D (P23886) Transport ATP-binding protein cydC,InterPro: ABC transporter transmembrane region; Hypothetical protein; putative cytochrome bd expression ABC transporter CydC 337996..339681 Staphylococcus carnosus subsp. carnosus TM300 7551497 YP_002633431.1 CDS Sca_0333 NC_012121.1 339826 340266 R (O34777) Organic hydroperoxide resistance transcriptional regulator,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; MarR family regulatory protein complement(339826..340266) Staphylococcus carnosus subsp. carnosus TM300 7551496 YP_002633432.1 CDS Sca_0334 NC_012121.1 340516 341445 D (P31521) 47 kDa protein (P47K),InterPro: Cobalamin synthesis protein/P47K; Hypothetical protein; putative cobalamin synthesis protein 340516..341445 Staphylococcus carnosus subsp. carnosus TM300 7549984 YP_002633433.1 CDS Sca_0335 NC_012121.1 341634 342542 D (P42972) Hypothetical oxidoreductase ycsN (EC 1.-.-.-),InterPro: Aldo/keto reductase; Hypothetical protein; alpha/keto reductase family protein 341634..342542 Staphylococcus carnosus subsp. carnosus TM300 7549985 YP_002633434.1 CDS Sca_0336 NC_012121.1 342573 342863 D (P45403) Cytochrome c-type biogenesis protein cycK; Hypothetical protein; hypothetical protein 342573..342863 Staphylococcus carnosus subsp. carnosus TM300 7549986 YP_002633435.1 CDS Sca_0337 NC_012121.1 342937 343560 D (Q9CHL6) Alkaline phosphatase like protein,InterPro: DedA family; Hypothetical protein; DedA family protein 342937..343560 Staphylococcus carnosus subsp. carnosus TM300 7549987 YP_002633436.1 CDS mdh NC_012121.1 343732 344667 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 343732..344667 Staphylococcus carnosus subsp. carnosus TM300 7549988 YP_002633437.1 CDS Sca_0339 NC_012121.1 344956 346494 D (Q07252) Membrane protein,InterPro: Sodium/sulphate symporter; Hypothetical protein; sodium/sulfate symporter family protein 344956..346494 Staphylococcus carnosus subsp. carnosus TM300 7551769 YP_002633438.1 CDS Sca_0340 NC_012121.1 346852 347469 R Hypothetical protein; hypothetical protein complement(346852..347469) Staphylococcus carnosus subsp. carnosus TM300 7549989 YP_002633439.1 CDS norA NC_012121.1 347779 348945 D (P21191) Quinolone resistance protein norA,InterPro: General substrate transporter; Hypothetical protein; quinolone resistance protein NorA 347779..348945 Staphylococcus carnosus subsp. carnosus TM300 7549990 YP_002633440.1 CDS Sca_0342 NC_012121.1 349280 350098 D (Q8Z992) D-methionine-binding lipoprotein metQ precursor,InterPro: NLPA lipoprotein; Hypothetical protein; putative lipoprotein 349280..350098 Staphylococcus carnosus subsp. carnosus TM300 7551858 YP_002633441.1 CDS ldh NC_012121.1 350120 351073 D (P14561) L-lactate dehydrogenase P (EC 1.1.1.27) (L-LDH P),InterPro: Lactate/malate dehydrogenase; Hypothetical protein; putative L-lactate dehydrogenase 350120..351073 Staphylococcus carnosus subsp. carnosus TM300 7549991 YP_002633442.1 CDS Sca_0344 NC_012121.1 351371 351730 D Hypothetical protein; hypothetical protein 351371..351730 Staphylococcus carnosus subsp. carnosus TM300 7551739 YP_002633443.1 CDS Sca_0345 NC_012121.1 351848 352336 D (P37174) Protein ybaK,InterPro: YbaK/prolyl-tRNA synthetase associated region; Hypothetical protein; YbaK family protein 351848..352336 Staphylococcus carnosus subsp. carnosus TM300 7549992 YP_002633444.1 CDS Sca_0346 NC_012121.1 352463 353227 D (P16644) Lactose phosphotransferase system repressor,InterPro: Bacterial regulatory protein DeoR family; Hypothetical protein; putative transcriptional regulators of sugar metabolism 352463..353227 Staphylococcus carnosus subsp. carnosus TM300 7549993 YP_002633445.1 CDS fruB NC_012121.1 353224 354144 D (O31714) 1-phosphofructokinase (EC 2.7.1.56) (Fructose 1-phosphate kinase),InterPro: Carbohydrate kinase PfkB; Hypothetical protein; putative fructose 1-phosphate kinase 353224..354144 Staphylococcus carnosus subsp. carnosus TM300 7549994 YP_002633446.1 CDS fruA NC_012121.1 354151 356109 D (P20966) PTS system fructose-specific IIBC component (EIIBC-Fru) (Fructose-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Fru),InterPro: PTS fructose IIC component; Hypothetical protein; putative fructose specific permease 354151..356109 Staphylococcus carnosus subsp. carnosus TM300 7551594 YP_002633447.1 CDS Sca_0349 NC_012121.1 356529 357938 D (O07585) Hypothetical UPF0053 protein yhdP,InterPro: CBS; Hypothetical protein; hypothetical protein 356529..357938 Staphylococcus carnosus subsp. carnosus TM300 7551592 YP_002633448.1 CDS Sca_0350 NC_012121.1 358107 358535 D Hypothetical protein; hypothetical protein 358107..358535 Staphylococcus carnosus subsp. carnosus TM300 7549995 YP_002633449.1 CDS Sca_0351 NC_012121.1 358612 359091 D Hypothetical protein; hypothetical protein 358612..359091 Staphylococcus carnosus subsp. carnosus TM300 7549996 YP_002633450.1 CDS saeR' NC_012121.1 359063 359596 D (P39663) Alkaline phosphatase synthesis transcriptional regulatory protein sphR,InterPro: Response regulator receiver,Similar to N-terminal part (aa 1-178) of saeR protein [Staphylococcus aureus] (CAD89114): 228 aa; Hypothetical protein; response regulator saeR (fragment 1) 359063..359596 Staphylococcus carnosus subsp. carnosus TM300 7549997 YP_002633451.1 CDS saeR'' NC_012121.1 <359597 >359746 D Similar to C-terminal part (aa 179-228) of saeR protein [Staphylococcus aureus](CAD89114): 228 aa; Hypothetical protein; response regulator saeR (fragment 2) <359597..>359746 Staphylococcus carnosus subsp. carnosus TM300 7552101 YP_002633452.1 CDS saeS NC_012121.1 359749 360783 D (Q93CB7) Sensor histidine kinase mtrB (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; histidine protein kinase SaeS 359749..360783 Staphylococcus carnosus subsp. carnosus TM300 7552102 YP_002633453.1 CDS scdA NC_012121.1 360836 361528 R involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA complement(360836..361528) Staphylococcus carnosus subsp. carnosus TM300 7552103 YP_002633454.1 CDS Sca_0355 NC_012121.1 361849 362685 R (Q8XBT6) 25-diketo-D-gluconic acid reductase A (EC 1.1.1.274) (25-DKG reductase A) (25-DKGR A) (25DKGR-A) (AKR5C),InterPro: Aldo/keto reductase; Hypothetical protein; Aldo/keto reductase family protein complement(361849..362685) Staphylococcus carnosus subsp. carnosus TM300 7552106 YP_002633455.1 CDS Sca_0356 NC_012121.1 362914 363168 R InterPro: Transglycosylase-associated protein; Hypothetical protein; hypothetical protein complement(362914..363168) Staphylococcus carnosus subsp. carnosus TM300 7549998 YP_002633456.1 CDS Sca_0357 NC_012121.1 363272 363853 R Hypothetical protein; hypothetical protein complement(363272..363853) Staphylococcus carnosus subsp. carnosus TM300 7549999 YP_002633457.1 CDS Sca_0358 NC_012121.1 364011 364724 R Hypothetical protein; putative organic radical activating enzyme complement(364011..364724) Staphylococcus carnosus subsp. carnosus TM300 7550000 YP_002633458.1 CDS Sca_0359 NC_012121.1 364717 365142 R (Q46903) Putative 6-pyruvoyl tetrahydrobiopterin synthase (EC 4.2.3.12) (PTPS) (PTP synthase),InterPro: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; Hypothetical protein; 6-pyruvoyl tetrahydropterin synthase complement(364717..365142) Staphylococcus carnosus subsp. carnosus TM300 7550001 YP_002633459.1 CDS Sca_0360 NC_012121.1 365144 365815 R (P77756) Hypothetical protein ybaX,InterPro: ExsB; Hypothetical protein; putative ExsB family protein complement(365144..365815) Staphylococcus carnosus subsp. carnosus TM300 7550002 YP_002633460.1 CDS Sca_0361 NC_012121.1 366157 366744 D (P06193) Para-aminobenzoate synthase glutamine amidotransferase component II (EC 6.3.5.8) (ADC synthase),InterPro: Glutamine amidotransferase of anthranilate synthase; Hypothetical protein; glutamine amidotransferase class-I protein 366157..366744 Staphylococcus carnosus subsp. carnosus TM300 7550003 YP_002633461.1 CDS Sca_0362 NC_012121.1 366734 367879 D (P32483) Para-aminobenzoate synthase (EC 6.3.5.8) (P-aminobenzoic acid synthase) (PABA synthase),InterPro: Anthranilate synthase component I and chorismate binding protein; Hypothetical protein; putative chorismate binding protein 366734..367879 Staphylococcus carnosus subsp. carnosus TM300 7550004 YP_002633462.1 CDS Sca_0363 NC_012121.1 367882 368490 D Hypothetical protein; putative 4-amino-4-deoxychorismate lyase 367882..368490 Staphylococcus carnosus subsp. carnosus TM300 7550005 YP_002633463.1 CDS Sca_0364 NC_012121.1 368771 369466 D (P60495) Kinase A inhibitor (Sporulation inhibitor kipI),InterPro: Protein of unknown function DUF213; Hypothetical protein; putative allophanate hydrolase subunit 1 368771..369466 Staphylococcus carnosus subsp. carnosus TM300 7550006 YP_002633464.1 CDS Sca_0365 NC_012121.1 369466 370470 D (P75745) Hypothetical protein ybgK,InterPro: Urea amidolyase-related; Hypothetical protein; putative allophanate hydrolase subunit 2 369466..370470 Staphylococcus carnosus subsp. carnosus TM300 7550007 YP_002633465.1 CDS Sca_0366 NC_012121.1 371112 373052 D (P54496) Hypothetical protein yqgS,InterPro: Sulfatase; Hypothetical protein; putative membrane-bound sulfatase 371112..373052 Staphylococcus carnosus subsp. carnosus TM300 7550008 YP_002633466.1 CDS Sca_0367 NC_012121.1 373321 375192 D (P43672) ABC transporter ATP-binding protein uup,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein 373321..375192 Staphylococcus carnosus subsp. carnosus TM300 7550009 YP_002633467.1 CDS recQ NC_012121.1 375205 376983 D (P15043) ATP-dependent DNA helicase recQ (EC 3.6.1.-),InterPro: ATP-requiring DNA helicase RecQ; Hypothetical protein; DNA helicase recQ 375205..376983 Staphylococcus carnosus subsp. carnosus TM300 7550010 YP_002633468.1 CDS opuBA NC_012121.1 377083 378039 D (Q45460) Choline transport ATP-binding protein opuBA,InterPro: ABC transporter; Hypothetical protein; putative proline/glycine betaine ABC transporter ATPase 377083..378039 Staphylococcus carnosus subsp. carnosus TM300 7552016 YP_002633469.1 CDS opuAC NC_012121.1 378036 379550 D (Q45462) Choline-binding protein precursor,InterPro: Substrate-binding region of ABC-type glycine betaine transport system; Hypothetical protein; putative glycine betaine ABC transporter substrate-binding protein 378036..379550 Staphylococcus carnosus subsp. carnosus TM300 7551889 YP_002633470.1 CDS hisC NC_012121.1 380128 381192 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 380128..381192 Staphylococcus carnosus subsp. carnosus TM300 7551888 YP_002633471.1 CDS Sca_0372 NC_012121.1 381349 381648 D (Q99VP8) Putative 5(3)-deoxyribonucleotidase (EC 3.1.3.-); Hypothetical protein; hypothetical protein 381349..381648 Staphylococcus carnosus subsp. carnosus TM300 7551690 YP_002633472.1 CDS Sca_0373 NC_012121.1 381623 381889 D (Q99VP8) Putative 5(3)-deoxyribonucleotidase (EC 3.1.3.-); Hypothetical protein; hypothetical protein 381623..381889 Staphylococcus carnosus subsp. carnosus TM300 7550011 YP_002633473.1 CDS Sca_0374 NC_012121.1 382067 383569 R (P94408) Hypothetical transporter yclF,InterPro: Amino acid/peptide transporter; Hypothetical protein; putative proton-dependent oligopeptide transporter complement(382067..383569) Staphylococcus carnosus subsp. carnosus TM300 7550012 YP_002633474.1 CDS Sca_0375 NC_012121.1 383798 385318 R (P94408) Hypothetical transporter yclF,InterPro: Amino acid/peptide transporter; Hypothetical protein; putative di-/tripeptide transporter complement(383798..385318) Staphylococcus carnosus subsp. carnosus TM300 7550013 YP_002633475.1 CDS Sca_0376 NC_012121.1 385483 385986 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(385483..385986) Staphylococcus carnosus subsp. carnosus TM300 7550014 YP_002633476.1 CDS Sca_0377 NC_012121.1 385989 386879 R (Q07835) Hypothetical transport protein yxxF,InterPro: Protein of unknown function DUF6; Hypothetical protein; putative permease complement(385989..386879) Staphylococcus carnosus subsp. carnosus TM300 7550015 YP_002633477.1 CDS nrdI NC_012121.1 387760 388152 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 387760..388152 Staphylococcus carnosus subsp. carnosus TM300 7550016 YP_002633478.1 CDS nrdE NC_012121.1 388133 390229 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 388133..390229 Staphylococcus carnosus subsp. carnosus TM300 7551864 YP_002633479.1 CDS nrdF NC_012121.1 390368 391342 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 390368..391342 Staphylococcus carnosus subsp. carnosus TM300 7551861 YP_002633480.1 CDS sstA NC_012121.1 391626 392600 D (P37738) Ferric anguibactin transport system permease protein fatD,InterPro: FecCD transport family; Hypothetical protein; FecCD transport family protein SstA 391626..392600 Staphylococcus carnosus subsp. carnosus TM300 7551862 YP_002633481.1 CDS sstB NC_012121.1 392590 393552 D (P37737) Ferric anguibactin transport system permease protein fatC,InterPro: FecCD transport family; Hypothetical protein; FecCD transport family protein SstB 392590..393552 Staphylococcus carnosus subsp. carnosus TM300 7552149 YP_002633482.1 CDS sstC NC_012121.1 393549 394307 D (P49938) Ferrichrome transport ATP-binding protein fhuC,InterPro: ABC transporter; Hypothetical protein; ABC transporter ATP-binding protein 393549..394307 Staphylococcus carnosus subsp. carnosus TM300 7552150 YP_002633483.1 CDS sstD NC_012121.1 394395 395423 D (P11460) Ferric anguibactin-binding protein precursor,InterPro: Periplasmic binding protein; Hypothetical protein; lipoprotein SstD 394395..395423 Staphylococcus carnosus subsp. carnosus TM300 7552151 YP_002633484.1 CDS Sca_0385 NC_012121.1 395914 396252 R (P36078) Hypothetical 13.6 kDa protein in MDH1-VMA5 intergenic region,InterPro: CHY zinc finger; Hypothetical protein; putative CHY zinc finger family protein complement(395914..396252) Staphylococcus carnosus subsp. carnosus TM300 7552152 YP_002633485.1 CDS murB NC_012121.1 396265 397191 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(396265..397191) Staphylococcus carnosus subsp. carnosus TM300 7550017 YP_002633486.1 CDS Sca_0387 NC_012121.1 397271 397795 R (Q45133) Glutamate-rich protein grpB,InterPro: Protein of unknown function UPF0157; Hypothetical protein; hypothetical protein complement(397271..397795) Staphylococcus carnosus subsp. carnosus TM300 7551820 YP_002633487.1 CDS Sca_0388 NC_012121.1 397900 398793 D (P15801) DNA polymerase gamma (EC 2.7.7.7) (Mitochondrial DNA polymerase catalytic subunit); Hypothetical protein; putative lipoprotein 397900..398793 Staphylococcus carnosus subsp. carnosus TM300 7550018 YP_002633488.1 CDS Sca_0389 NC_012121.1 398932 399252 D (P39914) Hypothetical protein ytxJ (ORF2) (ORF3); Hypothetical protein; hypothetical protein 398932..399252 Staphylococcus carnosus subsp. carnosus TM300 7550019 YP_002633489.1 CDS Sca_0390 NC_012121.1 399487 400617 D (P44507) Glycerate kinase (EC 2.7.1.31),InterPro: Conserved hypothetical protein 45; Hypothetical protein; putative glycerate kinase 399487..400617 Staphylococcus carnosus subsp. carnosus TM300 7550020 YP_002633490.1 CDS pepT NC_012121.1 400684 401916 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(400684..401916) Staphylococcus carnosus subsp. carnosus TM300 7550021 YP_002633491.1 CDS Sca_0392 NC_012121.1 401930 402427 R (P44520) Hypothetical protein HI0108; Hypothetical protein; hypothetical protein complement(401930..402427) Staphylococcus carnosus subsp. carnosus TM300 7551926 YP_002633492.1 CDS Sca_0393 NC_012121.1 402446 403210 R (P39402) Hypothetical protein yjjP; Hypothetical protein; hypothetical protein complement(402446..403210) Staphylococcus carnosus subsp. carnosus TM300 7550022 YP_002633493.1 CDS Sca_0394 NC_012121.1 403415 404482 R (P54595) Hypothetical protein yhcK,InterPro: GGDEF; Hypothetical protein; hypothetical protein complement(403415..404482) Staphylococcus carnosus subsp. carnosus TM300 7550023 YP_002633494.1 CDS llm NC_012121.1 404763 405818 D (O34753) Probable undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) (UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase),InterPro: Glycosyl transferase family 4; Hypothetical protein; putative phospho-N-acetylmuramyl-pentapeptide-transferase 404763..405818 Staphylococcus carnosus subsp. carnosus TM300 7550024 YP_002633495.1 CDS Sca_0396 NC_012121.1 405859 406500 R (P32437) Hypothetical UPF0029 protein yvyE,InterPro: Protein of unknown function UPF0029; Hypothetical protein; hypothetical protein complement(405859..406500) Staphylococcus carnosus subsp. carnosus TM300 7551753 YP_002633496.1 CDS Sca_0397 NC_012121.1 406641 407525 D (Q927X9) Hypothetical UPF0230 protein lin2658,InterPro: DegV; Hypothetical protein; hypothetical protein 406641..407525 Staphylococcus carnosus subsp. carnosus TM300 7550025 YP_002633497.1 CDS Sca_0398 NC_012121.1 407553 408908 D (P39145) ComF operon protein,InterPro: DEAD/DEAH box helicase; Hypothetical protein; putative ATP-dependent helicase 407553..408908 Staphylococcus carnosus subsp. carnosus TM300 7550026 YP_002633498.1 CDS Sca_0399 NC_012121.1 408901 409602 D (P39147) ComF operon protein; Hypothetical protein; putative amidophosphoribosyltransferase 408901..409602 Staphylococcus carnosus subsp. carnosus TM300 7550027 YP_002633499.1 CDS Sca_0400 NC_012121.1 409674 410240 D (P47995) Hypothetical protein in secA 5region (ORF1) (Fragment),InterPro: Sigma 54 modulation protein/ribosomal protein S30EA,In comparison to published sequence P47995 Hypothetical protein in SECA 5'region (ORF1) of S. carnosus, the gene starts further upstream.; Hypothetical protein; putative ribosome-associated protein 409674..410240 Staphylococcus carnosus subsp. carnosus TM300 7550028 YP_002633500.1 CDS secA NC_012121.1 410632 413160 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 410632..413160 Staphylococcus carnosus subsp. carnosus TM300 7550029 YP_002633502.1 CDS prfB'' NC_012121.1 413447 414448 D (P28367) Peptide chain release factor 2 (RF-2),InterPro: Peptide chain release factor 2,Probably fused to preceding ORF (prfB') by translational frameshift. According to sequence similarity, the fusion will start with codon at position 413405..413407.; Hypothetical protein; peptide chain release factor RF-2, major part 413447..414448 Staphylococcus carnosus subsp. carnosus TM300 7551957 YP_002633503.1 CDS Sca_0404 NC_012121.1 414759 415745 D (Q37896) Lysozyme (EC 3.2.1.17) (Lysis protein) (Muramidase) (Endolysin) (Morphogenesis protein 2),InterPro: CHAP; LysM; Hypothetical protein; putative LysM family protein 414759..415745 Staphylococcus carnosus subsp. carnosus TM300 7551958 YP_002633504.1 CDS Sca_0405 NC_012121.1 415939 416580 D InterPro: Metal-dependent phosphohydrolase HD subdomain; Hypothetical protein; putative metal-dependent phosphohydrolase 415939..416580 Staphylococcus carnosus subsp. carnosus TM300 7550030 YP_002633505.1 CDS Sca_0406 NC_012121.1 416587 416832 D (P37953) CsbA protein; Hypothetical protein; hypothetical protein 416587..416832 Staphylococcus carnosus subsp. carnosus TM300 7550031 YP_002633506.1 CDS uvrB NC_012121.1 417181 419163 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 417181..419163 Staphylococcus carnosus subsp. carnosus TM300 7550032 YP_002633507.1 CDS uvrA NC_012121.1 419171 422014 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 419171..422014 Staphylococcus carnosus subsp. carnosus TM300 7552291 YP_002633508.1 CDS hprK NC_012121.1 422226 423167 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 422226..423167 Staphylococcus carnosus subsp. carnosus TM300 7552290 YP_002633509.1 CDS lgt NC_012121.1 423164 423991 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 423164..423991 Staphylococcus carnosus subsp. carnosus TM300 7551702 YP_002633510.1 CDS Sca_0411 NC_012121.1 424006 424488 D (P77558) Putative colanic acid biosynthesis acetyltransferase wcaB (EC 2.3.1.-),InterPro: Bacterial transferase hexapeptide repeat; Hypothetical protein; putative acetyltransferase 424006..424488 Staphylococcus carnosus subsp. carnosus TM300 7551749 YP_002633511.1 CDS Sca_0412 NC_012121.1 424509 425948 D InterPro: TPR repeat; Hypothetical protein; hypothetical protein 424509..425948 Staphylococcus carnosus subsp. carnosus TM300 7550033 YP_002633512.1 CDS trxB NC_012121.1 426058 427011 D (Q99VL2) Thioredoxin reductase (EC 1.8.1.9) (TRXR),InterPro: Thioredoxin reductase; Hypothetical protein; putative thioredoxine reductase 426058..427011 Staphylococcus carnosus subsp. carnosus TM300 7550034 YP_002633513.1 CDS Sca_0414 NC_012121.1 427150 428103 D (Q8CTE3) Hypothetical UPF0042 protein SE0548,InterPro: Uncharacterised P-loop ATPase protein family UPF0042; Hypothetical protein; hypothetical protein 427150..428103 Staphylococcus carnosus subsp. carnosus TM300 7552271 YP_002633514.1 CDS Sca_0415 NC_012121.1 428090 429088 D (Q9K706) Hypothetical UPF0052 protein BH3568,InterPro: Protein of unknown function UPF0052; Hypothetical protein; hypothetical protein 428090..429088 Staphylococcus carnosus subsp. carnosus TM300 7550035 YP_002633515.1 CDS Sca_0416 NC_012121.1 429107 430051 D InterPro: Protein of unknown function DUF199; Hypothetical protein; hypothetical protein 429107..430051 Staphylococcus carnosus subsp. carnosus TM300 7550036 YP_002633516.1 CDS Sca_0417 NC_012121.1 430101 431276 R (P43531) Hypothetical transport protein ynfM,InterPro: Major facilitator superfamily; Hypothetical protein; putative major facilitator superfamily permease complement(430101..431276) Staphylococcus carnosus subsp. carnosus TM300 7550037 YP_002633517.1 CDS Sca_0418 NC_012121.1 431668 432993 R (P19072) Branched chain amino acid transport system II carrier protein (LIV-II),InterPro: Branched-chain amino acid transport system II carrier protein; Hypothetical protein; putative branched-chain amino acid transport system II carrier protein complement(431668..432993) Staphylococcus carnosus subsp. carnosus TM300 7550038 YP_002633518.1 CDS clpP NC_012121.1 433481 434065 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 433481..434065 Staphylococcus carnosus subsp. carnosus TM300 7552205 YP_002633519.1 CDS Sca_0420 NC_012121.1 434389 435291 R (O31574) Hypothetical UPF0105 protein yfhF; Hypothetical protein; putative nucleoside-diphosphate sugar epimerase complement(434389..435291) Staphylococcus carnosus subsp. carnosus TM300 7551475 YP_002633520.1 CDS Sca_0421 NC_012121.1 435881 436771 D Hypothetical protein; hypothetical protein 435881..436771 Staphylococcus carnosus subsp. carnosus TM300 7550040 YP_002633521.1 CDS Sca_0422 NC_012121.1 436847 437077 R Hypothetical protein; hypothetical protein complement(436847..437077) Staphylococcus carnosus subsp. carnosus TM300 7550041 YP_002633522.1 CDS Sca_0423 NC_012121.1 437391 438407 D (P35168) Central glycolytic genes regulator,InterPro: Putative sugar-binding domain; Hypothetical protein; putative transcriptional regulator with sugar binding domain 437391..438407 Staphylococcus carnosus subsp. carnosus TM300 7550042 YP_002633523.1 CDS gapA NC_012121.1 438473 439480 D Hypothetical protein; glyceraldehyde-3-phosphate dehydrogenase 438473..439480 Staphylococcus carnosus subsp. carnosus TM300 7550043 YP_002633524.1 CDS pgk NC_012121.1 439744 440934 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 439744..440934 Staphylococcus carnosus subsp. carnosus TM300 7551609 YP_002633525.1 CDS tpiA NC_012121.1 440977 441738 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 440977..441738 Staphylococcus carnosus subsp. carnosus TM300 7551933 YP_002633526.1 CDS gpmI NC_012121.1 441740 443257 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 441740..443257 Staphylococcus carnosus subsp. carnosus TM300 7552196 YP_002633527.1 CDS eno NC_012121.1 443353 444657 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 443353..444657 Staphylococcus carnosus subsp. carnosus TM300 7551662 YP_002633528.1 CDS Sca_0429 NC_012121.1 444845 445315 D Hypothetical protein; hypothetical protein 444845..445315 Staphylococcus carnosus subsp. carnosus TM300 7551548 YP_002633529.1 CDS secG NC_012121.1 445406 445642 D (O32233) Probable protein-export membrane protein secG,InterPro: Preprotein translocase SecG subunit; Hypothetical protein; preprotein translocase subunit SecG 445406..445642 Staphylococcus carnosus subsp. carnosus TM300 7550044 YP_002633530.1 CDS est NC_012121.1 445733 446473 D (Q06174) Carboxylesterase precursor (EC 3.1.1.1),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; carboxylesterase 445733..446473 Staphylococcus carnosus subsp. carnosus TM300 7552123 YP_002633531.1 CDS rnr NC_012121.1 446512 448869 D (O32231) Ribonuclease R (EC 3.1.-.-) (RNase R) (VacB protein homolog),InterPro: VacB and RNase II family 3-5 exoribonuclease; Hypothetical protein; putative ribonuclease R 446512..448869 Staphylococcus carnosus subsp. carnosus TM300 7551550 YP_002633532.1 CDS smpB NC_012121.1 448945 449415 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 448945..449415 Staphylococcus carnosus subsp. carnosus TM300 7552034 YP_002633533.1 CDS Sca_0434 NC_012121.1 450785 451387 D (O05220) Hypothetical protein ywrF; Hypothetical protein; putative flavoprotein oxygenase, DIM6/NTAB family protein 450785..451387 Staphylococcus carnosus subsp. carnosus TM300 7549769 YP_002633534.1 CDS Sca_0435 NC_012121.1 451535 452599 D InterPro: Glycosyl hydrolase BNR repeat; Hypothetical protein; BNR repeat domain-containing protein 451535..452599 Staphylococcus carnosus subsp. carnosus TM300 7550045 YP_002633535.1 CDS Sca_0436 NC_012121.1 452697 453425 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(452697..453425) Staphylococcus carnosus subsp. carnosus TM300 7550046 YP_002633536.1 CDS csp NC_012121.1 453810 454013 D (Q54974) Major cold-shock protein,InterPro: Cold-shock DNA-binding domain; Hypothetical protein; putative cold-shock protein 453810..454013 Staphylococcus carnosus subsp. carnosus TM300 7550047 YP_002633537.1 CDS Sca_0438 NC_012121.1 454120 454605 D Hypothetical protein; hypothetical protein 454120..454605 Staphylococcus carnosus subsp. carnosus TM300 7551486 YP_002633538.1 CDS Sca_0439 NC_012121.1 454648 455067 R Hypothetical protein; hypothetical protein complement(454648..455067) Staphylococcus carnosus subsp. carnosus TM300 7550048 YP_002633539.1 CDS Sca_0440 NC_012121.1 455256 455966 R Hypothetical protein; hypothetical protein complement(455256..455966) Staphylococcus carnosus subsp. carnosus TM300 7550049 YP_002633540.1 CDS Sca_0441 NC_012121.1 456076 457380 R (P43440) V-type sodium ATP synthase subunit J (EC 3.6.3.14) (Na(+)-translocating ATPase subunit J),InterPro: Cation transporter; Hypothetical protein; putative cation transport protein of TrkH family complement(456076..457380) Staphylococcus carnosus subsp. carnosus TM300 7550050 YP_002633541.1 CDS Sca_0442 NC_012121.1 457433 458176 D (P43054) Hypothetical 25.5 kDa protein in gyrB 5region (ORF219),InterPro: LemA family; Hypothetical protein; LemA family protein 457433..458176 Staphylococcus carnosus subsp. carnosus TM300 7550051 YP_002633542.1 CDS Sca_0443 NC_012121.1 458224 459027 D (P55140) Hypothetical protein ygcG,InterPro: Protein of unknown function DUF477; Hypothetical protein; hypothetical protein 458224..459027 Staphylococcus carnosus subsp. carnosus TM300 7550052 YP_002633543.1 CDS Sca_0444 NC_012121.1 459247 459528 D Hypothetical protein; hypothetical protein 459247..459528 Staphylococcus carnosus subsp. carnosus TM300 7550053 YP_002633544.1 CDS Sca_0445 NC_012121.1 459714 459917 D Hypothetical protein; hypothetical protein 459714..459917 Staphylococcus carnosus subsp. carnosus TM300 7550054 YP_002633545.1 CDS Sca_0446 NC_012121.1 460154 460549 R (Q10845) Hypothetical protein Rv2012/MT2067/Mb2035; Hypothetical protein; hypothetical protein complement(460154..460549) Staphylococcus carnosus subsp. carnosus TM300 7550055 YP_002633546.1 CDS Sca_0447 NC_012121.1 460572 461090 R Hypothetical protein; putative acetyltransferase complement(460572..461090) Staphylococcus carnosus subsp. carnosus TM300 7550056 YP_002633547.1 CDS aroD NC_012121.1 461522 462247 D catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 461522..462247 Staphylococcus carnosus subsp. carnosus TM300 7550057 YP_002633548.1 CDS Sca_0449 NC_012121.1 462320 462862 D InterPro: Nitroreductase family; Hypothetical protein; putative nitroreductase 462320..462862 Staphylococcus carnosus subsp. carnosus TM300 7551421 YP_002633549.1 CDS Sca_0450 NC_012121.1 462919 463242 R (P22217) Thioredoxin II (TR-II),InterPro: Thioredoxin type domain; Hypothetical protein; putative thioredoxin complement(462919..463242) Staphylococcus carnosus subsp. carnosus TM300 7550058 YP_002633550.1 CDS Sca_0451 NC_012121.1 463387 463743 D (O32175) Hypothetical protein yusI,InterPro: Conserved hypothetical protein ArsC related; Hypothetical protein; putative ArsC family protein 463387..463743 Staphylococcus carnosus subsp. carnosus TM300 7550059 YP_002633551.1 CDS gcdH NC_012121.1 463900 464280 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 463900..464280 Staphylococcus carnosus subsp. carnosus TM300 7550060 YP_002633552.1 CDS Sca_0453 NC_012121.1 464560 464922 D InterPro: TOPRIM; Hypothetical protein; TOPRIM domain-containing protein 464560..464922 Staphylococcus carnosus subsp. carnosus TM300 7551615 YP_002633553.1 CDS Sca_0454 NC_012121.1 464919 465218 D (P46843) Bifunctional thioredoxin reductase/thioredoxin [Includes: Thioredoxin reductase (EC 1.8.1.9) (TRXR); Thioredoxin],InterPro: Thioredoxin domain 2; Hypothetical protein; hypothetical protein 464919..465218 Staphylococcus carnosus subsp. carnosus TM300 7550061 YP_002633554.1 CDS Sca_0455 NC_012121.1 465478 466503 D (P30750) D-methionine transport ATP-binding protein metN,InterPro: ABC transporter; Hypothetical protein; ABC transporter ATP-binding protein 465478..466503 Staphylococcus carnosus subsp. carnosus TM300 7550062 YP_002633555.1 CDS Sca_0456 NC_012121.1 466496 467191 D (P46492) Probable D-methionine transport system permease protein metI,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative ABC transporter permease 466496..467191 Staphylococcus carnosus subsp. carnosus TM300 7550063 YP_002633556.1 CDS Sca_0457 NC_012121.1 467225 468049 D (Q8ZH40) D-methionine-binding lipoprotein metQ precursor,InterPro: NLPA lipoprotein; Hypothetical protein; putative lipoprotein 467225..468049 Staphylococcus carnosus subsp. carnosus TM300 7550064 YP_002633557.1 CDS Sca_0458 NC_012121.1 468422 469180 D (P80866) Vegetative protein 296 (VEG296),InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein 468422..469180 Staphylococcus carnosus subsp. carnosus TM300 7550065 YP_002633558.1 CDS Sca_0459 NC_012121.1 469246 470553 D (O50093) Hypothetical UPF0051 protein PH1385,InterPro: Protein of unknown function UPF0051; Hypothetical protein; hypothetical protein 469246..470553 Staphylococcus carnosus subsp. carnosus TM300 7550066 YP_002633559.1 CDS csdB NC_012121.1 470756 471988 D (Q99VG1) Probable cysteine desulfurase (EC 2.8.1.7),InterPro: Aminotransferase class V; Hypothetical protein; putative selenocysteine lyase 470756..471988 Staphylococcus carnosus subsp. carnosus TM300 7550067 YP_002633560.1 CDS Sca_0461 NC_012121.1 471978 472448 D Hypothetical protein; NifU-like protein 471978..472448 Staphylococcus carnosus subsp. carnosus TM300 7551485 YP_002633561.1 CDS sufB NC_012121.1 472679 474076 D (Q55790) Hypothetical UPF0051 protein slr0074,InterPro: Protein of unknown function UPF0051; Hypothetical protein; putative FeS assembly protein SufB 472679..474076 Staphylococcus carnosus subsp. carnosus TM300 7550068 YP_002633562.1 CDS int NC_012121.1 474144 475193 R (Q9CI63) Prophage ps2 probable integrase (Int-TnX),InterPro: Phage integrase,Sca-Prophage; Hypothetical protein; phage integrase complement(474144..475193) Staphylococcus carnosus subsp. carnosus TM300 7552155 YP_002633563.1 CDS Sca_0464 NC_012121.1 475670 475852 R Hypothetical protein; hypothetical protein complement(475670..475852) Staphylococcus carnosus subsp. carnosus TM300 7551723 YP_002633564.1 CDS Sca_0465 NC_012121.1 476194 476658 R Sca-Prophage,reporting helix-turn-helix motif; Hypothetical protein; hypothetical protein complement(476194..476658) Staphylococcus carnosus subsp. carnosus TM300 7550069 YP_002633565.1 CDS Sca_0466 NC_012121.1 476674 476997 R (O85264) Cryptic phage CTXphi transcriptional repressor rstR,InterPro: Helix-turn-helix motif,Sca-Prophage; Hypothetical protein; putative repressor, phage associated complement(476674..476997) Staphylococcus carnosus subsp. carnosus TM300 7550070 YP_002633566.1 CDS Sca_0467 NC_012121.1 477436 478203 D InterPro: BRO family N-terminal,Sca-prophage; Hypothetical protein; putative antirepressor, phage associated 477436..478203 Staphylococcus carnosus subsp. carnosus TM300 7550071 YP_002633567.1 CDS Sca_0468 NC_012121.1 478209 478364 D Sca-prophage; Hypothetical protein; hypothetical protein 478209..478364 Staphylococcus carnosus subsp. carnosus TM300 7550072 YP_002633568.1 CDS Sca_0469 NC_012121.1 478357 478581 R Sca-prophage; Hypothetical protein; hypothetical protein complement(478357..478581) Staphylococcus carnosus subsp. carnosus TM300 7550073 YP_002633569.1 CDS Sca_0470 NC_012121.1 479252 479524 R Sca-prophage; Hypothetical protein; hypothetical protein complement(479252..479524) Staphylococcus carnosus subsp. carnosus TM300 7550074 YP_002633570.1 CDS Sca_0471 NC_012121.1 479588 479824 D Reporting helix-turn-helix motif,Sca-prophage; Hypothetical protein; hypothetical protein 479588..479824 Staphylococcus carnosus subsp. carnosus TM300 7550075 YP_002633571.1 CDS Sca_0472 NC_012121.1 480130 480375 D Sca-prophage; Hypothetical protein; hypothetical protein 480130..480375 Staphylococcus carnosus subsp. carnosus TM300 7550076 YP_002633572.1 CDS Sca_0473 NC_012121.1 480368 480628 D Sca-prophage; Hypothetical protein; hypothetical protein 480368..480628 Staphylococcus carnosus subsp. carnosus TM300 7550077 YP_002633573.1 CDS Sca_0474 NC_012121.1 480585 481256 D Sca-prophage,InterPro: ERF,putatively involved in single-strand annealing; Hypothetical protein; hypothetical protein 480585..481256 Staphylococcus carnosus subsp. carnosus TM300 7550078 YP_002633574.1 CDS ssb NC_012121.1 481256 481687 D (Q932A8) Single-strand binding protein 1 (SSB 1) (Helix-destabilizing protein 1),InterPro: Single-strand binding protein,Sca-prophage; Hypothetical protein; putative single strand DNA binding protein,phage associated 481256..481687 Staphylococcus carnosus subsp. carnosus TM300 7550079 YP_002633575.1 CDS Sca_0476 NC_012121.1 481699 482250 D InterPro: HNH endonuclease,Sca-prophage; Hypothetical protein; putative HNH family endonuclease, phage associated 481699..482250 Staphylococcus carnosus subsp. carnosus TM300 7552147 YP_002633576.1 CDS Sca_0477 NC_012121.1 482251 482925 D Sca-prophage; Hypothetical protein; hypothetical protein 482251..482925 Staphylococcus carnosus subsp. carnosus TM300 7550080 YP_002633577.1 CDS Sca_0478 NC_012121.1 482922 483683 D Sca-prophage; Hypothetical protein; hypothetical protein 482922..483683 Staphylococcus carnosus subsp. carnosus TM300 7550081 YP_002633578.1 CDS Sca_0479 NC_012121.1 483684 484469 D (Q89B30) DNA replication protein dnaC,InterPro: IstB-like ATP-binding protein,Sca-prophage; Hypothetical protein; putative IstB-like ATP-binding protein, phage associated 483684..484469 Staphylococcus carnosus subsp. carnosus TM300 7550082 YP_002633579.1 CDS Sca_0480 NC_012121.1 484635 485042 D (P45911) Hypothetical protein yqaN,InterPro: Endodeoxyribonuclease RusA,Sca-prophage; Hypothetical protein; putative holliday junction resolvase, phage associated 484635..485042 Staphylococcus carnosus subsp. carnosus TM300 7550083 YP_002633580.1 CDS Sca_0481 NC_012121.1 485039 485215 D Sca-prophage; Hypothetical protein; hypothetical protein 485039..485215 Staphylococcus carnosus subsp. carnosus TM300 7550084 YP_002633581.1 CDS Sca_0482 NC_012121.1 485221 485751 D Sca-prophage; Hypothetical protein; hypothetical protein 485221..485751 Staphylococcus carnosus subsp. carnosus TM300 7550085 YP_002633582.1 CDS Sca_0483 NC_012121.1 485752 486228 D Sca-prophage; Hypothetical protein; hypothetical protein 485752..486228 Staphylococcus carnosus subsp. carnosus TM300 7550086 YP_002633583.1 CDS Sca_0484 NC_012121.1 486221 486706 D (Q9PR82) Hypothetical protein UU063; Hypothetical protein; hypothetical protein 486221..486706 Staphylococcus carnosus subsp. carnosus TM300 7550087 YP_002633584.1 CDS Sca_0485 NC_012121.1 486753 486950 D Sca-prophage; Hypothetical protein; hypothetical protein 486753..486950 Staphylococcus carnosus subsp. carnosus TM300 7550088 YP_002633585.1 CDS dut NC_012121.1 487147 487656 D (P33316) Deoxyuridine 5-triphosphate nucleotidohydrolase mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase),InterPro: DeoxyUTP pyrophosphatase subfamily 1; Hypothetical protein; putative dUTP pyrophosphatase, phage associated 487147..487656 Staphylococcus carnosus subsp. carnosus TM300 7550089 YP_002633586.1 CDS Sca_0487 NC_012121.1 487706 487912 D Sca-Prophage; Hypothetical protein; hypothetical protein 487706..487912 Staphylococcus carnosus subsp. carnosus TM300 7551544 YP_002633587.1 CDS Sca_0488 NC_012121.1 487913 488155 D Sca-Prophage; Hypothetical protein; hypothetical protein 487913..488155 Staphylococcus carnosus subsp. carnosus TM300 7550090 YP_002633588.1 CDS Sca_0489 NC_012121.1 488427 488711 D Sca-Prophage; Hypothetical protein; hypothetical protein 488427..488711 Staphylococcus carnosus subsp. carnosus TM300 7550091 YP_002633589.1 CDS Sca_0490 NC_012121.1 489235 489414 D Sca-Prophage; Hypothetical protein; hypothetical protein 489235..489414 Staphylococcus carnosus subsp. carnosus TM300 7550092 YP_002633590.1 CDS Sca_0491 NC_012121.1 489427 489840 D Sca-Prophage,Probably truncated; Hypothetical protein; hypothetical protein 489427..489840 Staphylococcus carnosus subsp. carnosus TM300 7550093 YP_002633591.1 CDS Sca_0492 NC_012121.1 490644 490991 D Sca-Prophage; Hypothetical protein; hypothetical protein 490644..490991 Staphylococcus carnosus subsp. carnosus TM300 7550094 YP_002633592.1 CDS Sca_0493 NC_012121.1 490988 492628 D (P59217) Putative terminase large subunit,InterPro: Phage Terminase,Sca-Prophage; Hypothetical protein; putative phage terminase, large subunit 490988..492628 Staphylococcus carnosus subsp. carnosus TM300 7550095 YP_002633593.1 CDS Sca_0494 NC_012121.1 492643 493815 D InterPro: Phage portal protein,Sca-Prophage; Hypothetical protein; putative phage portal protein 492643..493815 Staphylococcus carnosus subsp. carnosus TM300 7550096 YP_002633594.1 CDS Sca_0495 NC_012121.1 493805 494521 D (P56317) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp),InterPro: Clp protease,Sca-Prophage; Hypothetical protein; putative Clp protease, phage associated 493805..494521 Staphylococcus carnosus subsp. carnosus TM300 7550097 YP_002633595.1 CDS Sca_0496 NC_012121.1 494546 495664 D Sca-Prophage; Hypothetical protein; hypothetical protein 494546..495664 Staphylococcus carnosus subsp. carnosus TM300 7550098 YP_002633596.1 CDS Sca_0497 NC_012121.1 495737 496033 D Sca-Prophage; Hypothetical protein; hypothetical protein 495737..496033 Staphylococcus carnosus subsp. carnosus TM300 7550099 YP_002633597.1 CDS Sca_0498 NC_012121.1 496008 496373 D Sca-Prophage; Hypothetical protein; hypothetical protein 496008..496373 Staphylococcus carnosus subsp. carnosus TM300 7550100 YP_002633598.1 CDS Sca_0499 NC_012121.1 496370 496777 D Hypothetical protein; hypothetical protein 496370..496777 Staphylococcus carnosus subsp. carnosus TM300 7550101 YP_002633599.1 CDS Sca_0500 NC_012121.1 496774 497169 D Sca-Prophage; Hypothetical protein; hypothetical protein 496774..497169 Staphylococcus carnosus subsp. carnosus TM300 7550102 YP_002633600.1 CDS Sca_0501 NC_012121.1 497211 497852 D Hypothetical protein; major tail protein 497211..497852 Staphylococcus carnosus subsp. carnosus TM300 7550103 YP_002633601.1 CDS Sca_0502 NC_012121.1 497929 498390 D InterPro: Bacterial Ig-like group 2,Sca-Prophage; Hypothetical protein; phage phiSLT minor tail protein 497929..498390 Staphylococcus carnosus subsp. carnosus TM300 7550104 YP_002633602.1 CDS Sca_0503 NC_012121.1 498438 498782 D Hypothetical protein; hypothetical protein 498438..498782 Staphylococcus carnosus subsp. carnosus TM300 7550105 YP_002633603.1 CDS Sca_0504 NC_012121.1 498833 498988 D >sas:SAS0943,Length = 52,Score = 42.4 bits (98),Expect = 0.001,Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%),But no detectable SD sequence!; Hypothetical protein; hypothetical protein 498833..498988 Staphylococcus carnosus subsp. carnosus TM300 7550106 YP_002633604.1 CDS Sca_0505 NC_012121.1 499002 501107 D Sca-Prophage,Similar to aminoterminal part of phiSLT ORF2067; Hypothetical protein; phiSLT orf2067-like protein (fragment 1) 499002..501107 Staphylococcus carnosus subsp. carnosus TM300 7550107 YP_002633605.1 CDS Sca_0506 NC_012121.1 501142 505263 D Sca-Prophage,Similar to carboxyterminal part of phiSLT ORF2067,InterPro: SLT domain; Hypothetical protein; phiSLT orf2067-like protein (fragment 2) 501142..505263 Staphylococcus carnosus subsp. carnosus TM300 7550108 YP_002633606.1 CDS Sca_0507 NC_012121.1 505260 506093 D Sca-Prophage; Hypothetical protein; hypothetical protein 505260..506093 Staphylococcus carnosus subsp. carnosus TM300 7550109 YP_002633607.1 CDS Sca_0508 NC_012121.1 506104 507669 D Sca-Prophage; Hypothetical protein; hypothetical protein 506104..507669 Staphylococcus carnosus subsp. carnosus TM300 7550110 YP_002633608.1 CDS Sca_0509 NC_012121.1 507662 507880 D Sca-Prophage; Hypothetical protein; hypothetical protein 507662..507880 Staphylococcus carnosus subsp. carnosus TM300 7550111 YP_002633609.1 CDS Sca_0510 NC_012121.1 507885 509840 D (P28296) Oryzin precursor (EC 3.4.21.63) (Alkaline proteinase) (ALP) (Elastase) (Elastinolytic serine proteinase),InterPro: Parallel beta-helix repeat; Hypothetical protein; hypothetical protein 507885..509840 Staphylococcus carnosus subsp. carnosus TM300 7550112 YP_002633610.1 CDS Sca_0511 NC_012121.1 509843 511267 D Sca-Prophage; Hypothetical protein; hypothetical protein 509843..511267 Staphylococcus carnosus subsp. carnosus TM300 7550113 YP_002633611.1 CDS Sca_0512 NC_012121.1 511272 511628 D Sca-Prophage; Hypothetical protein; hypothetical protein 511272..511628 Staphylococcus carnosus subsp. carnosus TM300 7550114 YP_002633612.1 CDS Sca_0513 NC_012121.1 511628 511801 D Sca-Prophage; Hypothetical protein; hypothetical protein 511628..511801 Staphylococcus carnosus subsp. carnosus TM300 7550115 YP_002633613.1 CDS Sca_0514 NC_012121.1 511840 512262 D Hypothetical protein; hypothetical protein 511840..512262 Staphylococcus carnosus subsp. carnosus TM300 7550116 YP_002633614.1 CDS Sca_0515 NC_012121.1 512249 512647 D Sca-Prophage; Hypothetical protein; hypothetical protein 512249..512647 Staphylococcus carnosus subsp. carnosus TM300 7550117 YP_002633615.1 CDS Sca_0516 NC_012121.1 512694 514799 D Sca-Prophage; Hypothetical protein; hypothetical protein 512694..514799 Staphylococcus carnosus subsp. carnosus TM300 7550118 YP_002633616.1 CDS Sca_0517 NC_012121.1 514858 515121 D (Q99165) Hypothetical 9.5 kDa protein in ORF3 5region,InterPro: Holin SPP1,Sca-Prophage; Hypothetical protein; putative holin 514858..515121 Staphylococcus carnosus subsp. carnosus TM300 7550119 YP_002633617.1 CDS Sca_0518 NC_012121.1 515121 516524 D (P54525) Hypothetical protein yqiI,InterPro: CHAP,Sca-Prophage; Hypothetical protein; putative amidase, phage associated 515121..516524 Staphylococcus carnosus subsp. carnosus TM300 7550120 YP_002633618.1 CDS Sca_0519 NC_012121.1 517218 517898 D Sca-Prophage; Hypothetical protein; hypothetical protein 517218..517898 Staphylococcus carnosus subsp. carnosus TM300 7550121 YP_002633619.1 CDS Sca_0520 NC_012121.1 517891 518031 D Hypothetical protein; hypothetical protein 517891..518031 Staphylococcus carnosus subsp. carnosus TM300 7550122 YP_002633620.1 CDS glpQ NC_012121.1 518111 518911 D (P37965) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),InterPro: Glycerophosphoryl diester phosphodiesterase,Sca-Prophage; Hypothetical protein; putative glycerophosphoryl diester phosphodiesterase 518111..518911 Staphylococcus carnosus subsp. carnosus TM300 7550123 YP_002633621.1 CDS Sca_0522 NC_012121.1 519699 519914 D Hypothetical protein; hypothetical protein 519699..519914 Staphylococcus carnosus subsp. carnosus TM300 7551643 YP_002633622.1 CDS Sca_0523 NC_012121.1 520221 521174 D (P74409) Hypothetical UPF0053 protein sll0260,InterPro: CBS,Truncation of 20 amino acids at N-terminus; Hypothetical protein; hypothetical protein 520221..521174 Staphylococcus carnosus subsp. carnosus TM300 7550124 YP_002633623.1 CDS Sca_0524 NC_012121.1 521216 522292 D (Q12723) 2-nitropropane dioxygenase (EC 1.13.11.32) (Nitroalkane oxidase) (2-NPD),InterPro: 2-nitropropane dioxygenase NPD; Hypothetical protein; putative FMN-dependent dioxygenase 521216..522292 Staphylococcus carnosus subsp. carnosus TM300 7550125 YP_002633624.1 CDS Sca_0525 NC_012121.1 522417 523265 D InterPro: Protein of unknown function DUF72; Hypothetical protein; hypothetical protein 522417..523265 Staphylococcus carnosus subsp. carnosus TM300 7550126 YP_002633625.1 CDS Sca_0526 NC_012121.1 523277 524101 D (P54437) Hypothetical protein yrkJ,InterPro: Protein of unknown function DUF81; Hypothetical protein; hypothetical protein 523277..524101 Staphylococcus carnosus subsp. carnosus TM300 7550127 YP_002633626.1 CDS Sca_0527 NC_012121.1 524118 525437 D (P54602) Hypothetical protein yhcR precursor,InterPro: Metallo-phosphoesterase; Hypothetical protein; putative 5-nucleotidase 524118..525437 Staphylococcus carnosus subsp. carnosus TM300 7550128 YP_002633627.1 CDS lipA NC_012121.1 525521 526453 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 525521..526453 Staphylococcus carnosus subsp. carnosus TM300 7550129 YP_002633628.1 CDS Sca_0529 NC_012121.1 526637 527029 D Hypothetical protein; hypothetical protein 526637..527029 Staphylococcus carnosus subsp. carnosus TM300 7551752 YP_002633629.1 CDS Sca_0530 NC_012121.1 527079 527372 R Hypothetical protein; hypothetical protein complement(527079..527372) Staphylococcus carnosus subsp. carnosus TM300 7550130 YP_002633630.1 CDS Sca_0531 NC_012121.1 527472 527903 D InterPro: Protein of unknown function DUF86; Hypothetical protein; hypothetical protein 527472..527903 Staphylococcus carnosus subsp. carnosus TM300 7550131 YP_002633631.1 CDS Sca_0532 NC_012121.1 527908 528687 D (P15302) NagD protein,InterPro: HAD-superfamily subfamily IIA hydrolase hypothetical 1; Hypothetical protein; putative HAD superfamily hydrolase 527908..528687 Staphylococcus carnosus subsp. carnosus TM300 7550132 YP_002633632.1 CDS Sca_0533 NC_012121.1 528696 529667 D (Q8U3Y2) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase),InterPro: D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain; Hypothetical protein; putative D-isomer specific 2-hydroxyacid dehydrogenase 528696..529667 Staphylococcus carnosus subsp. carnosus TM300 7550133 YP_002633633.1 CDS dltA NC_012121.1 530259 531713 D transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 530259..531713 Staphylococcus carnosus subsp. carnosus TM300 7550134 YP_002633634.1 CDS dltB NC_012121.1 531713 532927 D (P35855) Protein dltB (Basic membrane protein) (BMP),InterPro: Membrane bound O-acyl transferase MBOAT; Hypothetical protein; DltB membrane protein 531713..532927 Staphylococcus carnosus subsp. carnosus TM300 7551525 YP_002633635.1 CDS dltC NC_012121.1 532950 533186 D D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 532950..533186 Staphylococcus carnosus subsp. carnosus TM300 7551526 YP_002633636.1 CDS dltD NC_012121.1 533183 534337 D (P39578) Protein dltD precursor,InterPro: DltD central region; Hypothetical protein; poly D-alanine transfer protein 533183..534337 Staphylococcus carnosus subsp. carnosus TM300 7551527 YP_002633637.1 CDS Sca_0538 NC_012121.1 534521 536569 D (P05425) Probable copper exporting ATPase B (EC 3.6.3.4),InterPro: Copper-translocating P-type ATPase; Hypothetical protein; putative cation exporting ATPase 534521..536569 Staphylococcus carnosus subsp. carnosus TM300 7551528 YP_002633638.1 CDS Sca_0539 NC_012121.1 536746 537516 D (P32184) HTH-type transcriptional activator tipA,InterPro: Bacterial regulatory protein MerR family; Hypothetical protein; putative MerR family transcriptional regulator 536746..537516 Staphylococcus carnosus subsp. carnosus TM300 7550135 YP_002633639.1 CDS Sca_0540 NC_012121.1 537581 537823 R (Q43909) Nitrogen fixation protein nifU,InterPro: Nitrogen-fixing NifU C-terminal; Hypothetical protein; hypothetical protein complement(537581..537823) Staphylococcus carnosus subsp. carnosus TM300 7550136 YP_002633640.1 CDS Sca_0541 NC_012121.1 537917 538237 D Hypothetical protein; hypothetical protein 537917..538237 Staphylococcus carnosus subsp. carnosus TM300 7550137 YP_002633641.1 CDS Sca_0542 NC_012121.1 538342 538773 D (P09163) Hypothetical acetyltransferase yjaB (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative acetyltransferase 538342..538773 Staphylococcus carnosus subsp. carnosus TM300 7550138 YP_002633642.1 CDS Sca_0543 NC_012121.1 538826 539890 R (P80861) NADH dehydrogenase-like protein yjlD (EC 1.6.99.-) (Glucose starvation-inducible protein 5) (GSI5),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; putative pyridine nucleotide-disulfide oxidoreductase complement(538826..539890) Staphylococcus carnosus subsp. carnosus TM300 7550139 YP_002633643.1 CDS Sca_0544 NC_012121.1 540132 540368 D Hypothetical protein; hypothetical protein 540132..540368 Staphylococcus carnosus subsp. carnosus TM300 7550140 YP_002633644.1 CDS Sca_0545 NC_012121.1 540412 540771 D (O32113) Hypothetical protein yutM,InterPro: Protein of unknown function HesB/YadR/YfhF; Hypothetical protein; hypothetical protein 540412..540771 Staphylococcus carnosus subsp. carnosus TM300 7550141 YP_002633645.1 CDS Sca_0546 NC_012121.1 541075 542280 D (P80861) NADH dehydrogenase-like protein yjlD (EC 1.6.99.-) (Glucose starvation-inducible protein 5) (GSI5),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; putative NADH dehydrogenase 541075..542280 Staphylococcus carnosus subsp. carnosus TM300 7550142 YP_002633646.1 CDS Sca_0547 NC_012121.1 542400 543887 D (O32106) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase),InterPro: Peptidase M17 cytosol aminopeptidase C-terminal; Hypothetical protein; cytosol aminopeptidase family protein 542400..543887 Staphylococcus carnosus subsp. carnosus TM300 7550143 YP_002633647.1 CDS Sca_0548 NC_012121.1 544051 545367 D (P46231) Hypothetical protein VP2115 (ORF3),InterPro: Na+/H+ antiporter NhaC; Hypothetical protein; putative permease 544051..545367 Staphylococcus carnosus subsp. carnosus TM300 7550144 YP_002633648.1 CDS Sca_0549 NC_012121.1 545398 545772 D (P14205) ComA operon protein,InterPro: Phenylacetic acid degradation-related protein; Hypothetical protein; hypothetical protein 545398..545772 Staphylococcus carnosus subsp. carnosus TM300 7550145 YP_002633649.1 CDS Sca_0550 NC_012121.1 545909 547057 R Hypothetical protein; hypothetical protein complement(545909..547057) Staphylococcus carnosus subsp. carnosus TM300 7550146 YP_002633650.1 CDS mnhG NC_012121.1 547194 547568 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G complement(547194..547568) Staphylococcus carnosus subsp. carnosus TM300 7550147 YP_002633651.1 CDS mnhF NC_012121.1 547540 547836 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F complement(547540..547836) Staphylococcus carnosus subsp. carnosus TM300 7551791 YP_002633652.1 CDS mnhE NC_012121.1 547836 548315 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E complement(547836..548315) Staphylococcus carnosus subsp. carnosus TM300 7551790 YP_002633653.1 CDS mnhD NC_012121.1 548317 549813 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(548317..549813) Staphylococcus carnosus subsp. carnosus TM300 7551789 YP_002633654.1 CDS mnhC NC_012121.1 549806 550150 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(549806..550150) Staphylococcus carnosus subsp. carnosus TM300 7551788 YP_002633655.1 CDS mnhB NC_012121.1 550150 550515 R (Q52978) Probable K(+)/H(+) antiporter subunit A/B (pH adaptation potassium efflux system protein A/B) (Pha system subunit A/B),InterPro: Na+/H+ antiporter MnhB subunit-related protein; Hypothetical protein; putative Na+/H+ antiporter subunit complement(550150..550515) Staphylococcus carnosus subsp. carnosus TM300 7551787 YP_002633656.1 CDS mnhA NC_012121.1 550559 552976 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A complement(550559..552976) Staphylococcus carnosus subsp. carnosus TM300 7551786 YP_002633657.1 CDS Sca_0558 NC_012121.1 553112 553495 R (Q08429) Kinase-associated lipoprotein B precursor; Hypothetical protein; hypothetical protein complement(553112..553495) Staphylococcus carnosus subsp. carnosus TM300 7551785 YP_002633658.1 CDS Sca_0559 NC_012121.1 553567 554160 D (P52017) Peptidyl-prolyl cis-trans isomerase 10 (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin-10),InterPro: Peptidyl-prolyl cis-trans isomerase cyclophilin type; Hypothetical protein; putative peptidyl-prolyl cis-trans isomerase 553567..554160 Staphylococcus carnosus subsp. carnosus TM300 7550148 YP_002633659.1 CDS Sca_0560 NC_012121.1 554262 554528 D (O05234) Hypothetical protein yugE; Hypothetical protein; hypothetical protein 554262..554528 Staphylococcus carnosus subsp. carnosus TM300 7550149 YP_002633660.1 CDS Sca_0561 NC_012121.1 554556 555083 D (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-),InterPro: NUDIX hydrolase; Hypothetical protein; hypothetical protein 554556..555083 Staphylococcus carnosus subsp. carnosus TM300 7550150 YP_002633661.1 CDS Sca_0562 NC_012121.1 555235 555621 D (P80870) General stress protein 13 (GSP13),InterPro: RNA binding S1; Hypothetical protein; hypothetical protein 555235..555621 Staphylococcus carnosus subsp. carnosus TM300 7550151 YP_002633662.1 CDS Sca_0563 NC_012121.1 555864 556991 D (P54524) Probable NADH-dependent flavin oxidoreductase yqiG (EC 1.-.-.-),InterPro: NADH:flavin oxidoreductase/NADH oxidase; Hypothetical protein; putative NADH-dependent flavin oxidoreductase 555864..556991 Staphylococcus carnosus subsp. carnosus TM300 7550152 YP_002633663.1 CDS rocA NC_012121.1 557244 558788 D (Q9K9B2) 1-pyrroline-5-carboxylate dehydrogenase 1 (EC 1.5.1.12) (P5C dehydrogenase 1),InterPro: delta-1-pyrroline-5-carboxylate dehydrogenase 2; Hypothetical protein; 1-pyrroline-5-carboxylate dehydrogenase 557244..558788 Staphylococcus carnosus subsp. carnosus TM300 7550153 YP_002633664.1 CDS rocD NC_012121.1 558968 560158 D (P60297) Acetylornithine aminotransferase 2 (EC 2.6.1.11) (ACOAT 2),InterPro: Aminotransferase class-III; Hypothetical protein; ornithine aminotransferase 558968..560158 Staphylococcus carnosus subsp. carnosus TM300 7552036 YP_002633665.1 CDS gudB NC_012121.1 560268 561512 D (P50735) NAD-specific glutamate dehydrogenase (EC 1.4.1.2) (NAD-GDH),InterPro: Glu/Leu/Phe/Val dehydrogenase C terminal; Hypothetical protein; NAD-specific glutamate dehydrogenase 560268..561512 Staphylococcus carnosus subsp. carnosus TM300 7552037 YP_002633666.1 CDS Sca_0567 NC_012121.1 561745 562707 D (Q8R5M5) 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45),InterPro: Amidohydrolase 2; Hypothetical protein; putative amidohydrolase 561745..562707 Staphylococcus carnosus subsp. carnosus TM300 7551673 YP_002633667.1 CDS argH NC_012121.1 562777 564150 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(562777..564150) Staphylococcus carnosus subsp. carnosus TM300 7550154 YP_002633668.1 CDS argG NC_012121.1 564140 565345 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(564140..565345) Staphylococcus carnosus subsp. carnosus TM300 7551414 YP_002633669.1 CDS pgi NC_012121.1 565693 567024 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 565693..567024 Staphylococcus carnosus subsp. carnosus TM300 7551413 YP_002633670.1 CDS orf1 NC_012121.1 567229 567792 D (P76219) Hypothetical UPF0043 protein ydjX,Orf1; similar to Bacillus subtilis yhjE,Due to manual inspection of SD sequence, start codon at position 39 of published sequence ( AAD09009 ) was chosen.; Hypothetical protein; hypothetical protein 567229..567792 Staphylococcus carnosus subsp. carnosus TM300 7551932 YP_002633671.1 CDS sipA NC_012121.1 567805 568329 D type-I signal peptidase 567805..568329 Staphylococcus carnosus subsp. carnosus TM300 7551897 YP_002633672.1 CDS sipB NC_012121.1 568346 568915 D (P72365) Signal peptidase IB (EC 3.4.21.89) (SPase IB) (Leader peptidase IB),InterPro: Signal peptidase; Hypothetical protein; type-1 signal peptidase 1B 568346..568915 Staphylococcus carnosus subsp. carnosus TM300 7552132 YP_002633673.1 CDS addB NC_012121.1 569078 572545 D (P23477) ATP-dependent nuclease subunit B; Hypothetical protein; putative ATP-dependent nuclease subunit B 569078..572545 Staphylococcus carnosus subsp. carnosus TM300 7552133 YP_002633674.1 CDS addA NC_012121.1 572542 576204 D (P23478) ATP-dependent nuclease subunit A,InterPro: UvrD/REP helicase; Hypothetical protein; putative ATP-dependent nuclease subunit A 572542..576204 Staphylococcus carnosus subsp. carnosus TM300 7551372 YP_002633675.1 CDS Sca_0576 NC_012121.1 576378 577286 D (O28058) Hypothetical protein AF2225,InterPro: Fumarylacetoacetate (FAA) hydrolase,reporting helix-turn-helix motif; Hypothetical protein; fumarylacetoacetate (FAA) hydrolase family protein 576378..577286 Staphylococcus carnosus subsp. carnosus TM300 7551371 YP_002633676.1 CDS Sca_0577 NC_012121.1 577414 577809 R Hypothetical protein; hypothetical protein complement(577414..577809) Staphylococcus carnosus subsp. carnosus TM300 7550155 YP_002633677.1 CDS cdr NC_012121.1 577930 579252 R NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase complement(577930..579252) Staphylococcus carnosus subsp. carnosus TM300 7550156 YP_002633678.1 CDS Sca_0579 NC_012121.1 579364 580209 R (P43051) Hypothetical 31.6 kDa protein in UPP 3region,InterPro: Cof protein; Hypothetical protein; HAD superfamily hydrolase complement(579364..580209) Staphylococcus carnosus subsp. carnosus TM300 7551466 YP_002633679.1 CDS Sca_0580 NC_012121.1 580508 580816 D (P53383) Mrp protein homolog,InterPro: Protein of unknown function DUF59; Hypothetical protein; hypothetical protein 580508..580816 Staphylococcus carnosus subsp. carnosus TM300 7550157 YP_002633680.1 CDS Sca_0581 NC_012121.1 581131 582966 D (P43993) Hypothetical protein HI0392,InterPro: Acyltransferase 3 family; Hypothetical protein; hypothetical protein 581131..582966 Staphylococcus carnosus subsp. carnosus TM300 7550158 YP_002633681.1 CDS clpB NC_012121.1 583163 585772 D (P74361) ClpB protein,InterPro: AAA ATPase central region; Hypothetical protein; ClpB chaperone 583163..585772 Staphylococcus carnosus subsp. carnosus TM300 7550159 YP_002633682.1 CDS Sca_0583 NC_012121.1 585874 586077 R Hypothetical protein; hypothetical protein complement(585874..586077) Staphylococcus carnosus subsp. carnosus TM300 7551472 YP_002633683.1 CDS FabH NC_012121.1 586339 587280 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 586339..587280 Staphylococcus carnosus subsp. carnosus TM300 7550160 YP_002633684.1 CDS fab NC_012121.1 587292 588536 D (P73283) 3-oxoacyl-[acyl-carrier-protein] synthase II (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase II) (KAS II),InterPro: Beta-ketoacyl synthase; Hypothetical protein; 3-oxoacyl-ACP synthase II 587292..588536 Staphylococcus carnosus subsp. carnosus TM300 7551555 YP_002633685.1 CDS Sca_0586 NC_012121.1 588792 590030 D (P31126) Hypothetical protein ydeE,InterPro: Major facilitator superfamily; Hypothetical protein; putative major facilitator superfamily permease 588792..590030 Staphylococcus carnosus subsp. carnosus TM300 7551551 YP_002633686.1 CDS Sca_0587 NC_012121.1 590067 590441 R Hypothetical protein; hypothetical protein complement(590067..590441) Staphylococcus carnosus subsp. carnosus TM300 7550161 YP_002633687.1 CDS oppB NC_012121.1 590713 591639 D (P24138) Oligopeptide transport system permease protein oppB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; oligopeptide transport system permease OppB-like protein 590713..591639 Staphylococcus carnosus subsp. carnosus TM300 7550162 YP_002633688.1 CDS oppC NC_012121.1 591639 592703 D (P24139) Oligopeptide transport system permease protein oppC,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative oligopeptide transport system permease OppC 591639..592703 Staphylococcus carnosus subsp. carnosus TM300 7551884 YP_002633689.1 CDS oppD NC_012121.1 592718 593800 D (P24136) Oligopeptide transport ATP-binding protein oppD,InterPro: ABC transporter; Hypothetical protein; oligopeptide transport system ATP-binding protein OppD 592718..593800 Staphylococcus carnosus subsp. carnosus TM300 7551885 YP_002633690.1 CDS oppF NC_012121.1 593790 594833 D (P24137) Oligopeptide transport ATP-binding protein oppF,InterPro: ABC transporter,Reveals a N-terminal extension of about 35 aa when compared to homologs in databases; Hypothetical protein; oligopeptide transport system ATP-binding protein OppF 593790..594833 Staphylococcus carnosus subsp. carnosus TM300 7551886 YP_002633691.1 CDS oppA NC_012121.1 594848 596512 D (P26906) Dipeptide-binding protein dppE precursor,InterPro: Bacterial extracellular solute-binding protein family 5; Hypothetical protein; putative peptide binding protein OppA 594848..596512 Staphylococcus carnosus subsp. carnosus TM300 7551887 YP_002633692.1 CDS Sca_0593 NC_012121.1 596675 597676 D (O32254) Hypothetical protein yvbT,InterPro: Bacterial luciferase,reporting nucleic acid binding motif; Hypothetical protein; hypothetical protein 596675..597676 Staphylococcus carnosus subsp. carnosus TM300 7551883 YP_002633693.1 CDS thiC' NC_012121.1 598054 599457 D (Q9KBJ4) Thiamine biosynthesis protein thiC,InterPro: Thiamine biosynthesis protein ThiC,Similar to amino-terminal part of thiamin biosynthesis protein [Bacillus halodurans C-125] (BAB05652).; Hypothetical protein; thiamin biosynthesis protein ThiC (fragment 1) 598054..599457 Staphylococcus carnosus subsp. carnosus TM300 7550163 YP_002633694.1 CDS thiC'' NC_012121.1 599388 599798 D (Q82FI7) Thiamine biosynthesis protein thiC,InterPro: Thiamine biosynthesis protein ThiC,Similar to carboxy-terminal part of thiamin biosynthesis protein [Bacillus halodurans C-125] (BAB05652).; Hypothetical protein; thiamine biosynthesis protein ThiC (fragment 2) 599388..599798 Staphylococcus carnosus subsp. carnosus TM300 7552174 YP_002633695.1 CDS trpS NC_012121.1 600309 601304 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(600309..601304) Staphylococcus carnosus subsp. carnosus TM300 7552175 YP_002633696.1 CDS spxA NC_012121.1 601701 602099 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 601701..602099 Staphylococcus carnosus subsp. carnosus TM300 7552267 YP_002633697.1 CDS Sca_0598 NC_012121.1 602404 603120 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 602404..603120 Staphylococcus carnosus subsp. carnosus TM300 7550164 YP_002633698.1 CDS pepF NC_012121.1 603409 605217 D (O31605) Oligoendopeptidase F homolog (EC 3.4.24.-),InterPro: Oligoendopeptidase F; Hypothetical protein; oligoendopeptidase F 603409..605217 Staphylococcus carnosus subsp. carnosus TM300 7550165 YP_002633699.1 CDS Sca_0600 NC_012121.1 605542 605871 R Hypothetical protein; hypothetical protein complement(605542..605871) Staphylococcus carnosus subsp. carnosus TM300 7551925 YP_002633700.1 CDS Sca_0601 NC_012121.1 605902 606462 R Similar to carboxy-terminal part of thiol protease [Staphylococcus aureus] (BAB86291).,InterPro: Peptidase C47 staphopain peptidase; Hypothetical protein; thiol protease-like protein (fragment 2) complement(605902..606462) Staphylococcus carnosus subsp. carnosus TM300 7550166 YP_002633701.1 CDS Sca_0602 NC_012121.1 606522 607061 R Similar to amino-terminal part of thiol protease [Staphylococcus aureus] (BAB86291).; Hypothetical protein; thiol protease-like protein (fragment 1) complement(606522..607061) Staphylococcus carnosus subsp. carnosus TM300 7550167 YP_002633702.1 CDS Sca_0603 NC_012121.1 607476 608261 R (Q81YT8) Probable disulfide bond formation protein D precursor (Disulfide oxidoreductase D) (Thiol-disulfide oxidoreductase D); Hypothetical protein; putative dithiol-disulfide isomerase complement(607476..608261) Staphylococcus carnosus subsp. carnosus TM300 7550168 YP_002633703.1 CDS Sca_0604 NC_012121.1 608277 608648 R (Q9CC59) Hemoglobin-like protein HbO,InterPro: Protozoan/cyanobacterial globin; Hypothetical protein; globin family protein complement(608277..608648) Staphylococcus carnosus subsp. carnosus TM300 7550169 YP_002633704.1 CDS Sca_0605 NC_012121.1 608751 609323 R (P30871) Hypothetical protein ygiF (ORFXE),InterPro: Adenylate cyclase; Hypothetical protein; hypothetical protein complement(608751..609323) Staphylococcus carnosus subsp. carnosus TM300 7550170 YP_002633705.1 CDS Sca_0606 NC_012121.1 609476 609823 D Hypothetical protein; hypothetical protein 609476..609823 Staphylococcus carnosus subsp. carnosus TM300 7550171 YP_002633706.1 CDS Sca_0607 NC_012121.1 609840 610475 D (Q49640) Probable GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP 3-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase),InterPro: RelA/SpoT; Hypothetical protein; hypothetical protein 609840..610475 Staphylococcus carnosus subsp. carnosus TM300 7550172 YP_002633707.1 CDS ppnK NC_012121.1 610484 611293 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 610484..611293 Staphylococcus carnosus subsp. carnosus TM300 7550173 YP_002633708.1 CDS Sca_0609 NC_012121.1 611293 612177 D (O31613) Hypothetical pseudouridine synthase yjbO (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase),InterPro: Pseudouridine synthase RluD; Hypothetical protein; putative pseudouridylate synthase 611293..612177 Staphylococcus carnosus subsp. carnosus TM300 7550174 YP_002633709.1 CDS Sca_0610 NC_012121.1 612198 613580 D (O67820) Inosine-5-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD),InterPro: Divalent cation transporter; Hypothetical protein; putative divalent cation transporter 612198..613580 Staphylococcus carnosus subsp. carnosus TM300 7550175 YP_002633710.1 CDS Sca_0611 NC_012121.1 613591 615447 D (Q83SQ3) Glutathione-regulated potassium-efflux system protein kefC (K(+)/H(+) antiporter),InterPro: Sodium/hydrogen exchanger; Hypothetical protein; putative cation transport system 613591..615447 Staphylococcus carnosus subsp. carnosus TM300 7550176 YP_002633711.1 CDS fabI NC_012121.1 615660 616430 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 615660..616430 Staphylococcus carnosus subsp. carnosus TM300 7550177 YP_002633712.1 CDS Sca_0613 NC_012121.1 616848 618086 D (P71369) Hypothetical metabolite transport protein HI1104,InterPro: General substrate transporter; Hypothetical protein; putative transporter protein 616848..618086 Staphylococcus carnosus subsp. carnosus TM300 7551556 YP_002633713.1 CDS Sca_0614 NC_012121.1 618215 619300 R (O34472) Hypothetical UPF0118 protein yrrI,InterPro: Protein of unknown function UPF0118,UPF0118, Domain of unknown function DUF20. This transmembrane region is found in putative permeases and predicted transmembrane proteins it has no known function. It is not clear what source suggested that these proteins may be permeases and this information should be treated with caution.; Hypothetical protein; hypothetical protein complement(618215..619300) Staphylococcus carnosus subsp. carnosus TM300 7550178 YP_002633714.1 CDS Sca_0615 NC_012121.1 619553 621199 R (P30145) Sodium/proton-dependent alanine carrier protein,InterPro: Sodium:alanine symporter; Hypothetical protein; sodium:alanine symporter family protein complement(619553..621199) Staphylococcus carnosus subsp. carnosus TM300 7550179 YP_002633715.1 CDS Sca_0616 NC_012121.1 621503 622240 D (P31471) Protein yieL,InterPro: Putative esterase; Hypothetical protein; putative esterase family protein 621503..622240 Staphylococcus carnosus subsp. carnosus TM300 7550180 YP_002633716.1 CDS Sca_0617 NC_012121.1 622337 622846 D similar to 2'-5' RNA ligase; hypothetical protein 622337..622846 Staphylococcus carnosus subsp. carnosus TM300 7550181 YP_002633717.1 CDS Sca_0618 NC_012121.1 623048 624253 R (P39843) Multidrug resistance protein 2 (Multidrug-efflux transporter 2),InterPro: Major facilitator superfamily; Hypothetical protein; putative permease complement(623048..624253) Staphylococcus carnosus subsp. carnosus TM300 7550182 YP_002633718.1 CDS Sca_0619 NC_012121.1 624231 625406 R processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase complement(624231..625406) Staphylococcus carnosus subsp. carnosus TM300 7550183 YP_002633719.1 CDS murE NC_012121.1 625803 627287 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 625803..627287 Staphylococcus carnosus subsp. carnosus TM300 7550184 YP_002633720.1 CDS prfC NC_012121.1 627521 629083 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 627521..629083 Staphylococcus carnosus subsp. carnosus TM300 7551823 YP_002633721.1 CDS Sca_0624 NC_012121.1 629356 630171 D (O34447) Hypothetical protein yceF,InterPro: Integral membrane protein TerC family; Hypothetical protein; putative TerC family integral membrane protein 629356..630171 Staphylococcus carnosus subsp. carnosus TM300 7551959 YP_002633722.1 CDS Sca_0625 NC_012121.1 630349 632100 D (P39668) Hypothetical serine protease yyxA (EC 3.4.21.-),InterPro: Peptidase S1 chymotrypsin family; Hypothetical protein; putative protease 630349..632100 Staphylococcus carnosus subsp. carnosus TM300 7550185 YP_002633723.1 CDS Sca_0626 NC_012121.1 632118 633476 D (P43440) V-type sodium ATP synthase subunit J (EC 3.6.3.14) (Na(+)-translocating ATPase subunit J),InterPro: Cation transporter; Hypothetical protein; putative sodium transport protein 632118..633476 Staphylococcus carnosus subsp. carnosus TM300 7550186 YP_002633724.1 CDS Sca_0627 NC_012121.1 633695 634159 D (P71047) Hypothetical UPF0074 protein ywgB precursor,InterPro: Protein of unknown function UPF0074; Hypothetical protein; putative transcriptional regulator 633695..634159 Staphylococcus carnosus subsp. carnosus TM300 7550187 YP_002633725.1 CDS Sca_0628 NC_012121.1 634189 635511 D (P77212) Probable pyridine nucleotide-disulfide oxidoreductase ykgC,InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; putative pyridine nucleotide-disulfide oxidoreductase 634189..635511 Staphylococcus carnosus subsp. carnosus TM300 7550188 YP_002633726.1 CDS hisIE NC_012121.1 635575 636204 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(635575..636204) Staphylococcus carnosus subsp. carnosus TM300 7550189 YP_002633727.1 CDS hisF NC_012121.1 636195 636959 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(636195..636959) Staphylococcus carnosus subsp. carnosus TM300 7551696 YP_002633728.1 CDS hisA NC_012121.1 636956 637660 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(636956..637660) Staphylococcus carnosus subsp. carnosus TM300 7551693 YP_002633729.1 CDS hisH NC_012121.1 637653 638234 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(637653..638234) Staphylococcus carnosus subsp. carnosus TM300 7551688 YP_002633730.1 CDS hisB NC_012121.1 638231 638812 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(638231..638812) Staphylococcus carnosus subsp. carnosus TM300 7551695 YP_002633731.1 CDS hisC NC_012121.1 638790 639794 R (Q8R5Q4) Histidinol-phosphate aminotransferase (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase),InterPro: Aminotransferase class I and II; Hypothetical protein; putative histidinol-phosphate transaminase complement(638790..639794) Staphylococcus carnosus subsp. carnosus TM300 7551689 YP_002633732.1 CDS hisD NC_012121.1 639791 641050 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(639791..641050) Staphylococcus carnosus subsp. carnosus TM300 7551691 YP_002633733.1 CDS hisG NC_012121.1 641040 641657 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(641040..641657) Staphylococcus carnosus subsp. carnosus TM300 7551692 YP_002633734.1 CDS hisZ NC_012121.1 641670 642500 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(641670..642500) Staphylococcus carnosus subsp. carnosus TM300 7551694 YP_002633735.1 CDS Sca_0638 NC_012121.1 642676 643491 R (P22862) Arylesterase (EC 3.1.1.2) (Aryl-ester hydrolase),InterPro: Alpha/beta hydrolase fold; Hypothetical protein; putative alpha/beta fold family hydrolase complement(642676..643491) Staphylococcus carnosus subsp. carnosus TM300 7551698 YP_002633736.1 CDS Sca_0639 NC_012121.1 643690 643941 D Similarity to N-terminal part of transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300184).; Hypothetical protein; transcriptional regulator 643690..643941 Staphylococcus carnosus subsp. carnosus TM300 7550190 YP_002633737.1 CDS Sca_0640 NC_012121.1 644330 644683 D similar to amino-terminal part of hypothetical protein CdifQ_02000652 [Clostridium difficile QCD-32g58] ZP_01232326; Hypothetical protein; Fic protein family protein (fragment 1) 644330..644683 Staphylococcus carnosus subsp. carnosus TM300 7550191 YP_002633738.1 CDS Sca_0641 NC_012121.1 644716 645051 D similar to carboxy-terminal part of hypothetical protein CdifQ_02000652 [Clostridium difficile QCD-32g58] ZP_01232326; Hypothetical protein; Fic protein family protein (fragment 2) 644716..645051 Staphylococcus carnosus subsp. carnosus TM300 7550192 YP_002633739.1 CDS Sca_0642 NC_012121.1 646055 646627 R (P40396) Competence transcription factor (CTF) (Competence protein K); Hypothetical protein; putative ComK family protein complement(646055..646627) Staphylococcus carnosus subsp. carnosus TM300 7552207 YP_002633740.1 CDS Sca_0643 NC_012121.1 646840 647058 D (O31594) Hypothetical protein yhzC; Hypothetical protein; hypothetical protein 646840..647058 Staphylococcus carnosus subsp. carnosus TM300 7550194 YP_002633741.1 CDS Sca_0644 NC_012121.1 647138 648124 R (P47512) Probable lipoate-protein ligase A (EC 6.3.2.-),InterPro: Lipoyltransferase and lipoate-protein ligase; Hypothetical protein; putative lipoate-protein ligase complement(647138..648124) Staphylococcus carnosus subsp. carnosus TM300 7550195 YP_002633742.1 CDS Sca_0645 NC_012121.1 648328 648513 D Hypothetical protein; hypothetical protein 648328..648513 Staphylococcus carnosus subsp. carnosus TM300 7550196 YP_002633743.1 CDS Sca_0646 NC_012121.1 648520 649122 D Hypothetical protein; hypothetical protein 648520..649122 Staphylococcus carnosus subsp. carnosus TM300 7550197 YP_002633744.1 CDS Sca_0647 NC_012121.1 649182 649388 R Hypothetical protein; hypothetical protein complement(649182..649388) Staphylococcus carnosus subsp. carnosus TM300 7550198 YP_002633745.1 CDS Sca_0648 NC_012121.1 649401 649610 R InterPro: TM2; Hypothetical protein; hypothetical protein complement(649401..649610) Staphylococcus carnosus subsp. carnosus TM300 7550199 YP_002633746.1 CDS Sca_0649 NC_012121.1 649848 650417 D InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein 649848..650417 Staphylococcus carnosus subsp. carnosus TM300 7550200 YP_002633747.1 CDS Sca_0650 NC_012121.1 650446 651384 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(650446..651384) Staphylococcus carnosus subsp. carnosus TM300 7550201 YP_002633748.1 CDS menF NC_012121.1 651606 652958 D (Q51508) Salicylate biosynthesis isochorismate synthase (EC 5.4.4.2) (Isochorismate mutase),InterPro: Isochorismate synthase; Hypothetical protein; putative menaquinone-specific isochorismate synthase 651606..652958 Staphylococcus carnosus subsp. carnosus TM300 7550202 YP_002633749.1 CDS menD NC_012121.1 652951 654618 D (P23970) Menaquinone biosynthesis protein menD [Includes: 2-succinyl-6-hydroxy-24-cyclohexadiene-1-carboxylate synthase (EC 2.5.1.64) (SHCHC synthase); 2-oxoglutarate decarboxylase (EC 4.1.1.71) (Alpha-ketoglutarate decarboxylase) (KDC)],InterPro: Menaquinone biosynthesis protein; Hypothetical protein; putative menaquinone biosynthesis protein MenD 652951..654618 Staphylococcus carnosus subsp. carnosus TM300 7551773 YP_002633750.1 CDS Sca_0653 NC_012121.1 654611 655426 D (P23974) Putative esterase ytxM (EC 3.1.-.-),InterPro: Alpha/beta hydrolase fold; Hypothetical protein; putative hydrolase 654611..655426 Staphylococcus carnosus subsp. carnosus TM300 7551771 YP_002633751.1 CDS menB NC_012121.1 655419 656237 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 655419..656237 Staphylococcus carnosus subsp. carnosus TM300 7550203 YP_002633752.1 CDS Sca_0655 NC_012121.1 656552 656911 D (O34777) Organic hydroperoxide resistance transcriptional regulator,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative MarR type transcriptional regulator 656552..656911 Staphylococcus carnosus subsp. carnosus TM300 7551770 YP_002633753.1 CDS Sca_0656 NC_012121.1 657137 658300 R (P16524) Putative aminotransferase A (EC 2.6.1.-),InterPro: Aminotransferase class I and II; Hypothetical protein; putative aminotransferase complement(657137..658300) Staphylococcus carnosus subsp. carnosus TM300 7550204 YP_002633754.1 CDS Sca_0657 NC_012121.1 658451 659455 R (Q52778) Nodulation protein nolL (EC 2.3.1.-),InterPro: Acyltransferase 3 family; Hypothetical protein; hypothetical protein complement(658451..659455) Staphylococcus carnosus subsp. carnosus TM300 7550205 YP_002633755.1 CDS Sca_0658 NC_012121.1 659810 660229 D (P96708) Putative HTH-type transcriptional regulator ydgJ,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative MarR type transcriptional regulator 659810..660229 Staphylococcus carnosus subsp. carnosus TM300 7550206 YP_002633756.1 CDS bph NC_012121.1 660338 664102 R (P52081) Bifunctional autolysin precursor [Includes: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (EC 3.2.1.96)],InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Hypothetical protein; bifunctional peptidoglycan hydrolase complement(660338..664102) Staphylococcus carnosus subsp. carnosus TM300 7550207 YP_002633757.1 CDS Sca_0661 NC_012121.1 664567 664989 R (P52080) Hypothetical UPF0039 protein SAV1054/SA0906/MW0937 (ORF3),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative acetyltransferase (GNAT) family protein complement(664567..664989) Staphylococcus carnosus subsp. carnosus TM300 7551342 YP_002633758.1 CDS Sca_0662 NC_012121.1 665095 665568 R (P52079) Hypothetical protein SAV1055/SA0907/MW0938 (ORF2); Hypothetical protein; hypothetical protein complement(665095..665568) Staphylococcus carnosus subsp. carnosus TM300 7550208 YP_002633759.1 CDS Sca_0663 NC_012121.1 665587 666897 R (Q81K33) Membrane-bound protein lytR,InterPro: Cell envelope-related transcriptional attenuator; Hypothetical protein; putative membrane anchored protein with LytR_cpsA_psr domain complement(665587..666897) Staphylococcus carnosus subsp. carnosus TM300 7550209 YP_002633760.1 CDS Sca_0664 NC_012121.1 667298 668950 D (P18159) Probable phosphomannomutase (EC 5.4.2.8) (PMM),InterPro: Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; Hypothetical protein; putative phosphomannomutase 667298..668950 Staphylococcus carnosus subsp. carnosus TM300 7550210 YP_002633761.1 CDS Sca_0665 NC_012121.1 669014 670177 D (P05364) Beta-lactamase precursor (EC 3.5.2.6) (Cephalosporinase),InterPro: Beta-lactamase; Hypothetical protein; autolysis and methicillin resistant-like protein 669014..670177 Staphylococcus carnosus subsp. carnosus TM300 7550211 YP_002633762.1 CDS Sca_0666 NC_012121.1 670328 670942 D Reporting signal peptide (SignalP 3.0); Hypothetical protein; hypothetical protein 670328..670942 Staphylococcus carnosus subsp. carnosus TM300 7550212 YP_002633763.1 CDS lacF NC_012121.1 671245 671577 D (P23532) PTS system lactose-specific IIA component (EIIA-Lac) (Lactose-permease IIA component) (Phosphotransferase enzyme II A component) (EC 2.7.1.69) (EIII-Lac),InterPro: Phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; Hypothetical protein; putative lactose-specific enzyme IIA 671245..671577 Staphylococcus carnosus subsp. carnosus TM300 7550213 YP_002633764.1 CDS lacE NC_012121.1 671590 673290 D (P50976) PTS system lactose-specific IIBC component (EIIBC-Lac) (Lactose-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Lac),InterPro: PTS lactose/cellobiose IIC component; Hypothetical protein; putative PTS system lactose-specific component IIBC 671590..673290 Staphylococcus carnosus subsp. carnosus TM300 7551733 YP_002633765.1 CDS lacG NC_012121.1 673374 674831 D catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase 673374..674831 Staphylococcus carnosus subsp. carnosus TM300 7551732 YP_002633766.1 CDS arsC NC_012121.1 674873 675274 R (Q9K8K8) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier),InterPro: Low molecular weight phosphotyrosine protein phosphatase; Hypothetical protein; arsenate reductase complement(674873..675274) Staphylococcus carnosus subsp. carnosus TM300 7551734 YP_002633767.1 CDS arsB NC_012121.1 675290 676579 R (P74985) Arsenical pump membrane protein (Arsenic efflux pump protein),InterPro: Arsenical pump membrane protein; Hypothetical protein; arsenic efflux pump protein complement(675290..676579) Staphylococcus carnosus subsp. carnosus TM300 7551425 YP_002633768.1 CDS lacD NC_012121.1 676717 677652 R (Q8NVC9) Tagatose 16-diphosphate aldolase (EC 4.1.2.40) (Tagatose-bisphosphate aldolase) (D-tagatose-16-bisphosphate aldolase),InterPro: Tagatose 16-diphosphate aldolase,Tagatose 16-diphosphate aldolase Gram positive; Hypothetical protein; tagatose 1,6-diphosphate aldolase complement(676717..677652) Staphylococcus carnosus subsp. carnosus TM300 7551424 YP_002633769.1 CDS lacC NC_012121.1 677649 678596 R (P26421) Tagatose-6-phosphate kinase (EC 2.7.1.144) (Phosphotagatokinase),InterPro: Carbohydrate kinase PfkB; Hypothetical protein; putative tagatose-6-phosphate kinase complement(677649..678596) Staphylococcus carnosus subsp. carnosus TM300 7551731 YP_002633770.1 CDS lacB NC_012121.1 678596 679111 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(678596..679111) Staphylococcus carnosus subsp. carnosus TM300 7551730 YP_002633771.1 CDS lacA NC_012121.1 679130 679561 R (P26423) Galactose-6-phosphate isomerase lacA subunit (EC 5.3.1.26),InterPro: Ribose/galactose isomerase; Hypothetical protein; putative galactose-6-phosphate isomerase LacA subunit complement(679130..679561) Staphylococcus carnosus subsp. carnosus TM300 7551729 YP_002633772.1 CDS lacR NC_012121.1 679753 680505 R (P18816) Lactose phosphotransferase system repressor,InterPro: Bacterial regulatory protein DeoR family; Hypothetical protein; putative lactose phosphotransferase system repressor lacR complement(679753..680505) Staphylococcus carnosus subsp. carnosus TM300 7551728 YP_002633773.1 CDS Sca_0677 NC_012121.1 680586 681494 R catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC complement(680586..681494) Staphylococcus carnosus subsp. carnosus TM300 7551737 YP_002633774.1 CDS qoxD NC_012121.1 681622 681912 R (P34959) Quinol oxidase polypeptide IV (EC 1.9.3.-) (Quinol oxidase aa3-600 subunit qoxD),InterPro: Prokaryotic Cytochrome C oxidase subunit IV; Hypothetical protein; putative quinol oxidase polypeptide IV complement(681622..681912) Staphylococcus carnosus subsp. carnosus TM300 7550214 YP_002633775.1 CDS qoxC NC_012121.1 681909 682511 R (P34958) Quinol oxidase polypeptide III (EC 1.9.3.-) (Quinol oxidase aa3-600 subunit qoxC) (Oxidase aa(3)-600 subunit 3),InterPro: Cytochrome c oxidase subunit III; Hypothetical protein; putative quinol oxidase polypeptide III complement(681909..682511) Staphylococcus carnosus subsp. carnosus TM300 7552004 YP_002633776.1 CDS qoxB NC_012121.1 682504 684486 R (P34956) Quinol oxidase polypeptide I (EC 1.9.3.-) (Quinol oxidase aa3-600 subunit qoxB) (Oxidase aa(3)-600 subunit 1),InterPro: Cytochrome c oxidase subunit I; Hypothetical protein; quinol oxidase polypeptide I QoxB complement(682504..684486) Staphylococcus carnosus subsp. carnosus TM300 7552003 YP_002633777.1 CDS qoxA NC_012121.1 684486 685598 R (P34957) Quinol oxidase polypeptide II precursor (EC 1.9.3.-) (Quinol oxidase aa3-600 subunit qoxA) (Oxidase aa(3)-600 subunit 2),InterPro: Cytochrome aa3-600 quinol oxidase subunit II; Hypothetical protein; putative quinol oxidase polypeptide II QoxA complement(684486..685598) Staphylococcus carnosus subsp. carnosus TM300 7552002 YP_002633778.1 CDS Sca_0682 NC_012121.1 685898 686215 R Predicted signal peptide (SignalP 3.0) aa 1..26; Hypothetical protein; putative secreted protein complement(685898..686215) Staphylococcus carnosus subsp. carnosus TM300 7552001 YP_002633779.1 CDS Sca_0683 NC_012121.1 686604 687752 D (P24232) Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Dihydropteridine reductase) (EC 1.5.1.34) (Ferrisiderophore reductase B) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NOD),InterPro: Globin; Hypothetical protein; putative flavohemoprotein 686604..687752 Staphylococcus carnosus subsp. carnosus TM300 7550215 YP_002633780.1 CDS Sca_0684 NC_012121.1 687874 688950 D (P32153) Putative frv operon protein frvX,InterPro: Peptidase M42; Hypothetical protein; putative peptidase 687874..688950 Staphylococcus carnosus subsp. carnosus TM300 7550216 YP_002633781.1 CDS folD NC_012121.1 689074 689931 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(689074..689931) Staphylococcus carnosus subsp. carnosus TM300 7550217 YP_002633782.1 CDS purE NC_012121.1 690146 690622 D (P12044) Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC),InterPro: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; Hypothetical protein; phosphoribosylaminoimidazole carboxylase catalytic subunit 690146..690622 Staphylococcus carnosus subsp. carnosus TM300 7551588 YP_002633783.1 CDS purK NC_012121.1 690609 691736 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 690609..691736 Staphylococcus carnosus subsp. carnosus TM300 7551975 YP_002633784.1 CDS purC NC_012121.1 691736 692440 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 691736..692440 Staphylococcus carnosus subsp. carnosus TM300 7551978 YP_002633785.1 CDS purS NC_012121.1 692440 692706 D (P12049) Hypothetical UPF0062 protein yexA,InterPro: Protein of unknown function UPF0062; Hypothetical protein; putative phosphoribosylformylglycinamidine synthase, PurS component 692440..692706 Staphylococcus carnosus subsp. carnosus TM300 7551973 YP_002633786.1 CDS purQ NC_012121.1 692706 693377 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 692706..693377 Staphylococcus carnosus subsp. carnosus TM300 7551984 YP_002633787.1 CDS purL NC_012121.1 693370 695559 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 693370..695559 Staphylococcus carnosus subsp. carnosus TM300 7551982 YP_002633788.1 CDS purF NC_012121.1 695538 696959 D (P00497) Amidophosphoribosyltransferase precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase),InterPro: Amidophosphoribosyl transferase; Hypothetical protein; putative amidophosphoribosyltransferase PurF 695538..696959 Staphylococcus carnosus subsp. carnosus TM300 7551979 YP_002633789.1 CDS purM NC_012121.1 696964 698001 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 696964..698001 Staphylococcus carnosus subsp. carnosus TM300 7551976 YP_002633790.1 CDS purN NC_012121.1 697998 698564 D (Q8NX89) Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (GART) (GAR transformylase) (5-phosphoribosylglycinamide transformylase),InterPro: Phosphoribosylglycinamide formyltransferase; Hypothetical protein; putative phosphoribosylglycinamide formyltransferase PurN 697998..698564 Staphylococcus carnosus subsp. carnosus TM300 7551980 YP_002633791.1 CDS purH NC_012121.1 698582 700060 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 698582..700060 Staphylococcus carnosus subsp. carnosus TM300 7551981 YP_002633792.1 CDS purD NC_012121.1 700085 701332 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 700085..701332 Staphylococcus carnosus subsp. carnosus TM300 7551977 YP_002633793.1 CDS Sca_0697 NC_012121.1 701522 701746 R Hypothetical protein; hypothetical protein complement(701522..701746) Staphylococcus carnosus subsp. carnosus TM300 7551974 YP_002633794.1 CDS Sca_0698 NC_012121.1 701972 702766 R (P75357) Hypothetical protein MG302 homolog (A05_orf317),InterPro: Cobalt transport protein; Hypothetical protein; putative cobalt transport system permease complement(701972..702766) Staphylococcus carnosus subsp. carnosus TM300 7550218 YP_002633795.1 CDS Sca_0699 NC_012121.1 702759 704168 R (Q58488) Probable cobalt transport ATP-binding protein cbiO,InterPro: ABC transporter; Hypothetical protein; putative ABC-type cobalt transport system ATPase complement(702759..704168) Staphylococcus carnosus subsp. carnosus TM300 7550219 YP_002633796.1 CDS Sca_0700 NC_012121.1 704181 704756 R Hypothetical protein; hypothetical protein complement(704181..704756) Staphylococcus carnosus subsp. carnosus TM300 7550220 YP_002633797.1 CDS Sca_0701 NC_012121.1 705214 706515 D Hypothetical protein; hypothetical protein 705214..706515 Staphylococcus carnosus subsp. carnosus TM300 7550221 YP_002633798.1 CDS Sca_0702 NC_012121.1 706632 707819 D (P75876) Hypothetical UPF0064 protein yccW,InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; putative SAM methyltransferase 706632..707819 Staphylococcus carnosus subsp. carnosus TM300 7550222 YP_002633799.1 CDS Sca_0703 NC_012121.1 707834 708394 D Hypothetical protein; hypothetical protein 707834..708394 Staphylococcus carnosus subsp. carnosus TM300 7550223 YP_002633800.1 CDS ptsH NC_012121.1 708543 708809 D (P23534) Phosphocarrier protein HPr (Histidine-containing protein),InterPro: Phosphocarrier HPr protein,Has been sequenced previously in S. carnosus; Hypothetical protein; phosphocarrier protein HPr 708543..708809 Staphylococcus carnosus subsp. carnosus TM300 7550224 YP_002633801.1 CDS ptsI NC_012121.1 708811 710532 D phosphoenolpyruvate-protein phosphatase 708811..710532 Staphylococcus carnosus subsp. carnosus TM300 7551969 YP_002633802.1 CDS Sca_0706 NC_012121.1 710875 711108 R (Q47414) Glutaredoxin-like protein nrdH; Hypothetical protein; putative glutaredoxin complement(710875..711108) Staphylococcus carnosus subsp. carnosus TM300 7551970 YP_002633803.1 CDS Sca_0707 NC_012121.1 711334 712689 D (P94364) Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-),InterPro: Cytochrome bd ubiquinol oxidase subunit I; Hypothetical protein; putative cytochrome D ubiquinol oxidase subunit I 711334..712689 Staphylococcus carnosus subsp. carnosus TM300 7550225 YP_002633804.1 CDS Sca_0708 NC_012121.1 712686 713717 D (Q9KPG4) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase); Hypothetical protein; putative cytochrome D ubiquinol oxidase subunit II 712686..713717 Staphylococcus carnosus subsp. carnosus TM300 7550226 YP_002633805.1 CDS Sca_0709 NC_012121.1 713816 714475 D (P39760) Hypothetical protein ykqB (ORF4),InterPro: TrkA-N; Hypothetical protein; TrkA_N, TrkA_C family protein 713816..714475 Staphylococcus carnosus subsp. carnosus TM300 7550227 YP_002633806.1 CDS Sca_0710 NC_012121.1 714623 715168 R (P42404) Hypothetical protein yckF,InterPro: Sugar isomerase (SIS); Hypothetical protein; putative hexose phosphate isomerase complement(714623..715168) Staphylococcus carnosus subsp. carnosus TM300 7550228 YP_002633807.1 CDS Sca_0711 NC_012121.1 715170 715802 R (P39304) Probable hexulose-6-phosphate synthase (EC 4.1.2.-) (HUMPS) (D-arabino 3-hexulose 6-phosphate formaldehyde lyase),InterPro: Orotidine 5-phosphate decarboxylase; Hypothetical protein; putative hexulose-6-phosphate synthase complement(715170..715802) Staphylococcus carnosus subsp. carnosus TM300 7550229 YP_002633808.1 CDS Sca_0712 NC_012121.1 716028 716372 D (P42406) Hypothetical UPF0087 protein yckH,InterPro: Protein of unknown function DUF24; Hypothetical protein; putative transcriptional regulator 716028..716372 Staphylococcus carnosus subsp. carnosus TM300 7550230 YP_002633809.1 CDS Sca_0713 NC_012121.1 716428 718380 R (Q45493) Hypothetical UPF0036 protein ykqC,InterPro: Conserved hypothetical protein MG423; Hypothetical protein; putative metallo-beta-lactamase superfamily hydrolase complement(716428..718380) Staphylococcus carnosus subsp. carnosus TM300 7550231 YP_002633810.1 CDS Sca_0714 NC_012121.1 718380 718595 R Hypothetical protein; hypothetical protein complement(718380..718595) Staphylococcus carnosus subsp. carnosus TM300 7550232 YP_002633811.1 CDS Sca_0716 NC_012121.1 719052 719501 D Hypothetical protein; hypothetical protein 719052..719501 Staphylococcus carnosus subsp. carnosus TM300 7550233 YP_002633812.1 CDS def NC_012121.1 719619 720173 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(719619..720173) Staphylococcus carnosus subsp. carnosus TM300 7550234 YP_002633813.1 CDS Sca_0718 NC_012121.1 720298 720930 D (P15215) Laminin gamma-1 chain precursor (Laminin B2 chain); Hypothetical protein; putative lipoprotein 720298..720930 Staphylococcus carnosus subsp. carnosus TM300 7551915 YP_002633814.1 CDS pdhA NC_012121.1 721099 722211 D (P60089) Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1),InterPro: Dehydrogenase E1 component; Hypothetical protein; pyruvate dehydrogenase E1 component subunit alpha 721099..722211 Staphylococcus carnosus subsp. carnosus TM300 7550235 YP_002633815.1 CDS pdhB NC_012121.1 722215 723192 D (Q8CPN2) Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1),InterPro: Transketolase central region; Hypothetical protein; pyruvate dehydrogenase E1 component subunit beta 722215..723192 Staphylococcus carnosus subsp. carnosus TM300 7551916 YP_002633816.1 CDS pdhC NC_012121.1 723539 724879 D (Q99V06) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex),InterPro: Catalytic domain of components of various dehydrogenase complexes; Hypothetical protein; branched-chain alpha-keto acid dehydrogenase subunit E2 723539..724879 Staphylococcus carnosus subsp. carnosus TM300 7551917 YP_002633817.1 CDS pdhD NC_012121.1 724883 726289 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 724883..726289 Staphylococcus carnosus subsp. carnosus TM300 7551918 YP_002633818.1 CDS Sca_0723 NC_012121.1 726424 726699 D (Q8CT12) Hypothetical UPF0223 protein SE0795,InterPro: Protein of unknown function UPF0223; Hypothetical protein; hypothetical protein 726424..726699 Staphylococcus carnosus subsp. carnosus TM300 7551919 YP_002633819.1 CDS Sca_0724 NC_012121.1 726826 727365 D (P38522) Putative HTH-type transcriptional regulator ycjC,InterPro: Helix-turn-helix motif; Hypothetical protein; putative DNA binding protein 726826..727365 Staphylococcus carnosus subsp. carnosus TM300 7550236 YP_002633820.1 CDS potA NC_012121.1 727377 728480 D (P23858) Spermidine/putrescine transport ATP-binding protein potA,InterPro: Spermidine/putrescine ABC transporter ATP-binding subunit; Hypothetical protein; putative spermidine/putrescine import ATP-binding protein PotA 727377..728480 Staphylococcus carnosus subsp. carnosus TM300 7550237 YP_002633821.1 CDS potB NC_012121.1 728464 729270 D (Q56060) Spermidine/putrescine transport system permease protein potB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative spermidine/putrescine transport system permease potB 728464..729270 Staphylococcus carnosus subsp. carnosus TM300 7551948 YP_002633822.1 CDS potC NC_012121.1 729267 730079 D (Q83RR7) Spermidine/putrescine transport system permease protein potC,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative spermidine/putrescine transport system permease PotC 729267..730079 Staphylococcus carnosus subsp. carnosus TM300 7551949 YP_002633823.1 CDS potD NC_012121.1 730076 731149 D (P45168) Spermidine/putrescine-binding periplasmic protein 1 precursor (SPBP),InterPro: Bacterial extracellular solute-binding protein family 1; Hypothetical protein; putative spermidine/putrescine-binding protein PotD 730076..731149 Staphylococcus carnosus subsp. carnosus TM300 7551950 YP_002633824.1 CDS Sca_0729 NC_012121.1 731180 732364 D (P26019) DNA polymerase alpha catalytic subunit (EC 2.7.7.7); Hypothetical protein; hypothetical protein 731180..732364 Staphylococcus carnosus subsp. carnosus TM300 7551951 YP_002633825.1 CDS Sca_0730 NC_012121.1 732631 733431 D (Q02100) CRE-binding bZIP protein SKO1; Hypothetical protein; hypothetical protein 732631..733431 Staphylococcus carnosus subsp. carnosus TM300 7550238 YP_002633826.1 CDS Sca_0731 NC_012121.1 733483 734826 R (Q93V04) Manganese transport protein mntH (Hop-inducible cation transporter),InterPro: Natural resistance-associated macrophage protein; Hypothetical protein; manganese transport protein MntH complement(733483..734826) Staphylococcus carnosus subsp. carnosus TM300 7550239 YP_002633827.1 CDS Sca_0732 NC_012121.1 735032 735643 R Hypothetical protein; hypothetical protein complement(735032..735643) Staphylococcus carnosus subsp. carnosus TM300 7550240 YP_002633828.1 CDS Sca_0733 NC_012121.1 735805 736626 D (Q45499) Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase) (Inositol-1-phosphatase) (I-1-Pase),InterPro: Inositol monophosphatase; Hypothetical protein; putative inositol monophosphatase 735805..736626 Staphylococcus carnosus subsp. carnosus TM300 7550241 YP_002633829.1 CDS Sca_0734 NC_012121.1 736790 736981 R (O07630) Hypothetical protein ylaF; Hypothetical protein; hypothetical protein complement(736790..736981) Staphylococcus carnosus subsp. carnosus TM300 7550242 YP_002633830.1 CDS typA NC_012121.1 737076 738923 D (O07631) GTP-binding protein typA/bipA homolog,InterPro: GTP-binding protein TypA; Hypothetical protein; putative GTP-binding protein family protein TypA 737076..738923 Staphylococcus carnosus subsp. carnosus TM300 7550243 YP_002633831.1 CDS Sca_0736 NC_012121.1 739054 739242 R (O07633) Hypothetical protein ylaI; Hypothetical protein; hypothetical protein complement(739054..739242) Staphylococcus carnosus subsp. carnosus TM300 7552274 YP_002633832.1 CDS Sca_0737 NC_012121.1 739244 739726 R (O07636) Hypothetical protein ylaL; Hypothetical protein; hypothetical protein complement(739244..739726) Staphylococcus carnosus subsp. carnosus TM300 7550244 YP_002633833.1 CDS Sca_0738 NC_012121.1 739863 740138 D depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 739863..740138 Staphylococcus carnosus subsp. carnosus TM300 7550245 YP_002633834.1 CDS Sca_0739 NC_012121.1 740382 741602 D (O07639) Hypothetical protein ylaO,InterPro: Cell cycle protein; Hypothetical protein; putative cell division protein 740382..741602 Staphylococcus carnosus subsp. carnosus TM300 7550246 YP_002633835.1 CDS pyc NC_012121.1 742029 745478 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 742029..745478 Staphylococcus carnosus subsp. carnosus TM300 7550247 YP_002633836.1 CDS ctaA NC_012121.1 745608 746534 R (P12946) Cytochrome AA3 controlling protein,InterPro: Cytochrome oxidase assembly; Hypothetical protein; putative heme A synthase CtaA complement(745608..746534) Staphylococcus carnosus subsp. carnosus TM300 7551987 YP_002633837.1 CDS ctaB NC_012121.1 746807 747718 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 746807..747718 Staphylococcus carnosus subsp. carnosus TM300 7551488 YP_002633838.1 CDS Sca_0743 NC_012121.1 747744 748205 D (Q04453) Hypothetical 21.0 kDa protein in ctaF 3region (ORF1),InterPro: Protein of unknown function DUF420; Hypothetical protein; hypothetical protein 747744..748205 Staphylococcus carnosus subsp. carnosus TM300 7551489 YP_002633839.1 CDS Sca_0744 NC_012121.1 748340 749380 D Hypothetical protein; hypothetical protein 748340..749380 Staphylococcus carnosus subsp. carnosus TM300 7550248 YP_002633840.1 CDS Sca_0745 NC_012121.1 749401 749841 D (O34412) Regulatory protein ylbF; Hypothetical protein; regulatory protein YlbF 749401..749841 Staphylococcus carnosus subsp. carnosus TM300 7550249 YP_002633841.1 CDS Sca_0746 NC_012121.1 749951 750877 R (P37965) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),InterPro: Glycerophosphoryl diester phosphodiesterase; Hypothetical protein; putative glycerophosphoryl diester phosphodiesterase complement(749951..750877) Staphylococcus carnosus subsp. carnosus TM300 7550250 YP_002633842.1 CDS Sca_0747 NC_012121.1 751012 751266 D (Q8CSZ8) Hypothetical UPF0298 protein SE0821; Hypothetical protein; hypothetical protein 751012..751266 Staphylococcus carnosus subsp. carnosus TM300 7550251 YP_002633843.1 CDS Sca_0748 NC_012121.1 751349 751708 R Hypothetical protein; hypothetical protein complement(751349..751708) Staphylococcus carnosus subsp. carnosus TM300 7550252 YP_002633844.1 CDS Sca_0749 NC_012121.1 751770 752321 D (P44869) Putative methylase HI0767 (EC 2.1.1.-),InterPro: Conserved hypothetical protein 95; Hypothetical protein; hypothetical protein 751770..752321 Staphylococcus carnosus subsp. carnosus TM300 7550253 YP_002633845.1 CDS coaD NC_012121.1 752314 752799 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 752314..752799 Staphylococcus carnosus subsp. carnosus TM300 7550254 YP_002633846.1 CDS Sca_0751 NC_012121.1 752947 753897 R (Q28488) Mu-crystallin,InterPro: Ornithine cyclodeaminase/mu-crystallin; Hypothetical protein; putative ornithine cyclodeaminase complement(752947..753897) Staphylococcus carnosus subsp. carnosus TM300 7551479 YP_002633847.1 CDS Sca_0752 NC_012121.1 753914 755062 R (P10486) Type I restriction enzyme EcoR124II R protein (EC 3.1.21.3) (R.EcoR124II),InterPro: Protein of unknown function DUF795; Hypothetical protein; hypothetical protein complement(753914..755062) Staphylococcus carnosus subsp. carnosus TM300 7550255 YP_002633848.1 CDS Sca_0753 NC_012121.1 755190 755723 D InterPro: Protein of unknown function DUF177; Hypothetical protein; hypothetical protein 755190..755723 Staphylococcus carnosus subsp. carnosus TM300 7550256 YP_002633849.1 CDS rpmF NC_012121.1 755824 755997 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 755824..755997 Staphylococcus carnosus subsp. carnosus TM300 7550257 YP_002633850.1 CDS Sca_0755 NC_012121.1 756174 756920 D (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC 2.1.1.-),InterPro: tRNA/rRNA methyltransferase (SpoU); Hypothetical protein; SpoU rRNA Methylase family protein 756174..756920 Staphylococcus carnosus subsp. carnosus TM300 7552067 YP_002633851.1 CDS pheS NC_012121.1 757245 758303 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 757245..758303 Staphylococcus carnosus subsp. carnosus TM300 7550258 YP_002633852.1 CDS pheT NC_012121.1 758303 760708 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 758303..760708 Staphylococcus carnosus subsp. carnosus TM300 7551936 YP_002633853.1 CDS rnhC NC_012121.1 760780 761724 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(760780..761724) Staphylococcus carnosus subsp. carnosus TM300 7551937 YP_002633854.1 CDS Sca_0759 NC_012121.1 762029 762295 D (Q97H50) Flagellar hook-basal body complex protein fliE,InterPro: Protein of unknown function DUF710; Hypothetical protein; hypothetical protein 762029..762295 Staphylococcus carnosus subsp. carnosus TM300 7552032 YP_002633855.1 CDS Sca_0760 NC_012121.1 762305 762826 D InterPro: Colicin V production protein; Hypothetical protein; hypothetical protein 762305..762826 Staphylococcus carnosus subsp. carnosus TM300 7550259 YP_002633856.1 CDS Sca_0761 NC_012121.1 762933 764657 D (Q8K409) DNA polymerase beta (EC 2.7.7.7),InterPro: DNA polymerase family X; Hypothetical protein; hypothetical protein 762933..764657 Staphylococcus carnosus subsp. carnosus TM300 7550260 YP_002633857.1 CDS mutS2 NC_012121.1 764667 767015 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 764667..767015 Staphylococcus carnosus subsp. carnosus TM300 7550261 YP_002633858.1 CDS trxA NC_012121.1 767149 767463 D (Q9ZEH4) Thioredoxin (TRX),InterPro: Thioredoxin type domain; Hypothetical protein; putative thioredoxin TrxA 767149..767463 Staphylococcus carnosus subsp. carnosus TM300 7551830 YP_002633859.1 CDS uvrC NC_012121.1 767704 769491 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 767704..769491 Staphylococcus carnosus subsp. carnosus TM300 7552270 YP_002633860.1 CDS sdhC NC_012121.1 769971 770585 D (P08064) Succinate dehydrogenase cytochrome B-558 subunit; Hypothetical protein; succinate dehydrogenase cytochrome b-558 769971..770585 Staphylococcus carnosus subsp. carnosus TM300 7552292 YP_002633861.1 CDS sdhA NC_012121.1 770641 772431 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 770641..772431 Staphylococcus carnosus subsp. carnosus TM300 7552119 YP_002633862.1 CDS sdhB NC_012121.1 772431 773255 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 772431..773255 Staphylococcus carnosus subsp. carnosus TM300 7552117 YP_002633863.1 CDS Sca_0768 NC_012121.1 773443 774090 D (P52575) Isoflavone reductase (EC 1.3.1.-) (IFR) (NADPH:isoflavone oxidoreductase); Hypothetical protein; hypothetical protein 773443..774090 Staphylococcus carnosus subsp. carnosus TM300 7552118 YP_002633864.1 CDS Sca_0769 NC_012121.1 774106 774495 D (P24201) Transcriptional repressor mprA (EmrR protein),InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative regulatory protein 774106..774495 Staphylococcus carnosus subsp. carnosus TM300 7550262 YP_002633865.1 CDS murI NC_012121.1 774698 775498 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 774698..775498 Staphylococcus carnosus subsp. carnosus TM300 7550263 YP_002633866.1 CDS Sca_0771 NC_012121.1 775514 776098 D hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 775514..776098 Staphylococcus carnosus subsp. carnosus TM300 7551826 YP_002633867.1 CDS Sca_0772 NC_012121.1 776095 776409 D (P94559) Hypothetical UPF0025 protein ysnB,Note: similarity to N-terminal part of hypothetical protein SSP1643 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305](YP_301733); Hypothetical protein; hypothetical protein 776095..776409 Staphylococcus carnosus subsp. carnosus TM300 7550264 YP_002633868.1 CDS Sca_0773 NC_012121.1 776449 776604 D Note: similarity to C-terminal part of hypothetical protein SSP1643 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305](YP_301733); Hypothetical protein; hypothetical protein 776449..776604 Staphylococcus carnosus subsp. carnosus TM300 7550265 YP_002633869.1 CDS Sca_0774 NC_012121.1 776659 776838 R Hypothetical protein; hypothetical protein complement(776659..776838) Staphylococcus carnosus subsp. carnosus TM300 7550266 YP_002633870.1 CDS glx NC_012121.1 776997 777374 R (Q8XKU7) SsrA-binding protein,InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; putative glyoxalase complement(776997..777374) Staphylococcus carnosus subsp. carnosus TM300 7550267 YP_002633871.1 CDS Sca_0776 NC_012121.1 777485 777937 D (P16681) PhnB protein; Hypothetical protein; Glyoxalase family protein 777485..777937 Staphylococcus carnosus subsp. carnosus TM300 7551652 YP_002633872.1 CDS Sca_0777 NC_012121.1 778108 778554 D (Q10081) Hypothetical UPF0039 protein C11D3.02c in chromosome I,InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative acetyltransferase 778108..778554 Staphylococcus carnosus subsp. carnosus TM300 7550268 YP_002633873.1 CDS Sca_0778 NC_012121.1 778651 779034 R Hypothetical protein; hypothetical protein complement(778651..779034) Staphylococcus carnosus subsp. carnosus TM300 7550269 YP_002633874.1 CDS Sca_0779 NC_012121.1 779163 779690 R Hypothetical protein; hypothetical protein complement(779163..779690) Staphylococcus carnosus subsp. carnosus TM300 7550270 YP_002633875.1 CDS Sca_0780 NC_012121.1 779875 780447 D Hypothetical protein; putative lipoprotein 779875..780447 Staphylococcus carnosus subsp. carnosus TM300 7550271 YP_002633876.1 CDS Sca_0781 NC_012121.1 781035 781535 D Hypothetical protein; hypothetical protein 781035..781535 Staphylococcus carnosus subsp. carnosus TM300 7550272 YP_002633877.1 CDS Sca_0782 NC_012121.1 781552 782025 D Hypothetical protein; putative lipoprotein 781552..782025 Staphylococcus carnosus subsp. carnosus TM300 7550273 YP_002633878.1 CDS Sca_0783 NC_012121.1 782073 783014 D (O45244) Probable pre-mRNA splicing factor ATP-dependent RNA helicase mog-4 (Sex determination protein mog-4) (Masculinization of germ line protein 4); Hypothetical protein; hypothetical protein 782073..783014 Staphylococcus carnosus subsp. carnosus TM300 7550274 YP_002633879.1 CDS Sca_0784 NC_012121.1 783665 783799 D Hypothetical protein; phenol soluble modulin 783665..783799 Staphylococcus carnosus subsp. carnosus TM300 7552206 YP_002633880.1 CDS Sca_0785 NC_012121.1 783855 783992 D Hypothetical protein; phenol soluble modulin 783855..783992 Staphylococcus carnosus subsp. carnosus TM300 7550276 YP_002633881.1 CDS Sca_0786 NC_012121.1 784040 784777 R (P11926) Ornithine decarboxylase (EC 4.1.1.17) (ODC); Hypothetical protein; hypothetical protein complement(784040..784777) Staphylococcus carnosus subsp. carnosus TM300 7550277 YP_002633882.1 CDS Sca_0787 NC_012121.1 785132 785314 R Hypothetical protein; hypothetical protein complement(785132..785314) Staphylococcus carnosus subsp. carnosus TM300 7550278 YP_002633883.1 CDS Sca_0788 NC_012121.1 785520 786200 D (P33999) Hypothetical protein yjjG,InterPro: Haloacid dehalogenase-like hydrolase; Hypothetical protein; putative haloacid dehalogenase-like hydrolase 785520..786200 Staphylococcus carnosus subsp. carnosus TM300 7550279 YP_002633884.1 CDS Sca_0789 NC_012121.1 786250 786699 R InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein complement(786250..786699) Staphylococcus carnosus subsp. carnosus TM300 7550280 YP_002633885.1 CDS Sca_0790 NC_012121.1 786849 788462 D hypothetical protein 786849..788462 Staphylococcus carnosus subsp. carnosus TM300 7550281 YP_002633886.1 CDS mraZ NC_012121.1 788606 789037 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 788606..789037 Staphylococcus carnosus subsp. carnosus TM300 7550282 YP_002633887.1 CDS mraW NC_012121.1 789052 789987 D (Q8CSX7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-),InterPro: Bacterial methyltransferase; Hypothetical protein; S-adenosyl-methyltransferase MraW 789052..789987 Staphylococcus carnosus subsp. carnosus TM300 7551809 YP_002633888.1 CDS Sca_0793 NC_012121.1 790007 790411 D putative cell division protein 790007..790411 Staphylococcus carnosus subsp. carnosus TM300 7551807 YP_002633889.1 CDS pbpA NC_012121.1 790392 792545 D (Q07868) Penicillin-binding protein 2B (PBP-2B),InterPro: Penicillin-binding protein transpeptidase domain; Hypothetical protein; penicillin-binding protein Pbp1 790392..792545 Staphylococcus carnosus subsp. carnosus TM300 7550283 YP_002633890.1 CDS mraY NC_012121.1 792644 793609 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 792644..793609 Staphylococcus carnosus subsp. carnosus TM300 7551908 YP_002633891.1 CDS murD NC_012121.1 793613 794962 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 793613..794962 Staphylococcus carnosus subsp. carnosus TM300 7551808 YP_002633892.1 CDS div1b NC_012121.1 794977 795897 D (P16655) Division initiation protein (Cell division and sporulation protein),InterPro: Cell division protein FtsQ; Hypothetical protein; putative cell division protein 794977..795897 Staphylococcus carnosus subsp. carnosus TM300 7551822 YP_002633893.1 CDS ftsA NC_012121.1 795999 797411 D (Q99US9) Cell division protein ftsA,InterPro: Cell division protein FtsA; Hypothetical protein; putative cell division protein FtsA 795999..797411 Staphylococcus carnosus subsp. carnosus TM300 7551524 YP_002633894.1 CDS ftsZ NC_012121.1 797441 798613 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 797441..798613 Staphylococcus carnosus subsp. carnosus TM300 7551595 YP_002633895.1 CDS Sca_0800 NC_012121.1 798843 799637 D (Q9ZHA4) Hypothetical UPF0124 protein in ftsZ 3region,InterPro: Protein of unknown function DUF152; Hypothetical protein; hypothetical protein 798843..799637 Staphylococcus carnosus subsp. carnosus TM300 7551599 YP_002633896.1 CDS Sca_0801 NC_012121.1 799650 800324 D (Q9CPD5) Hypothetical UPF0001 protein PM0112,InterPro: Protein of unknown function UPF0001; Hypothetical protein; hypothetical protein 799650..800324 Staphylococcus carnosus subsp. carnosus TM300 7550284 YP_002633897.1 CDS Sca_0802 NC_012121.1 800321 800950 D (P73376) Ycf50-like protein,InterPro: Protein of unknown function DUF552; Hypothetical protein; hypothetical protein 800321..800950 Staphylococcus carnosus subsp. carnosus TM300 7550285 YP_002633898.1 CDS Sca_0803 NC_012121.1 800963 801259 D (P25254) Hypothetical protein PA0392,InterPro: Protein of unknown function YGGT; Hypothetical protein; hypothetical protein 800963..801259 Staphylococcus carnosus subsp. carnosus TM300 7550286 YP_002633899.1 CDS Sca_0804 NC_012121.1 801495 802106 D (P57481) Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase),InterPro: RNA-binding S4; Hypothetical protein; putative RNA-binding protein 801495..802106 Staphylococcus carnosus subsp. carnosus TM300 7550287 YP_002633900.1 CDS Sca_0805 NC_012121.1 802131 802748 D (O15079) Syntaphilin,InterPro: DivIVA; Hypothetical protein; hypothetical protein 802131..802748 Staphylococcus carnosus subsp. carnosus TM300 7550288 YP_002633901.1 CDS ileS NC_012121.1 803015 805762 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 803015..805762 Staphylococcus carnosus subsp. carnosus TM300 7550289 YP_002633902.1 CDS Sca_0807 NC_012121.1 805978 806430 D note: similar to N-terminal part of glyoxalase family protein [Staphylococcus saprophyticus subsp.saprophyticus ATCC 15305] (YP_301667),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein (fragment 1) 805978..806430 Staphylococcus carnosus subsp. carnosus TM300 7551713 YP_002633903.1 CDS Sca_0808 NC_012121.1 806352 806771 D note: similar to C-terminal part of glyoxalase family protein [Staphylococcus epidermidis RP62A] (YP_188343); Hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein (fragment 2) 806352..806771 Staphylococcus carnosus subsp. carnosus TM300 7550290 YP_002633904.1 CDS Sca_0809 NC_012121.1 806780 807268 D (P22865) Secreted 45 kDa protein precursor,InterPro: CHAP; Hypothetical protein; secretory antigen SsaA 806780..807268 Staphylococcus carnosus subsp. carnosus TM300 7550291 YP_002633905.1 CDS lspA NC_012121.1 807375 807854 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 807375..807854 Staphylococcus carnosus subsp. carnosus TM300 7550292 YP_002633906.1 CDS rluD NC_012121.1 807870 808787 D (Q45480) Hypothetical pseudouridine synthase ylyB (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase),InterPro: Pseudouridine synthase RluD; Hypothetical protein; putative ribosomal large subunit pseudouridine synthase D 807870..808787 Staphylococcus carnosus subsp. carnosus TM300 7551757 YP_002633907.1 CDS pyrR NC_012121.1 809440 809967 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 809440..809967 Staphylococcus carnosus subsp. carnosus TM300 7552029 YP_002633908.1 CDS pyrP NC_012121.1 810191 811477 D (P41006) Uracil permease (Uracil transporter),InterPro: Xanthine/uracil permease family; Hypothetical protein; uracil permease 810191..811477 Staphylococcus carnosus subsp. carnosus TM300 7552000 YP_002633909.1 CDS pyrB NC_012121.1 811519 812427 D (Q8CPJ7) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase),InterPro: Aspartate carbamoyltransferase; Hypothetical protein; putative aspartate transcarbamoylase 811519..812427 Staphylococcus carnosus subsp. carnosus TM300 7551999 YP_002633910.1 CDS pyrC NC_012121.1 812417 813688 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 812417..813688 Staphylococcus carnosus subsp. carnosus TM300 7551991 YP_002633911.1 CDS pyrAA NC_012121.1 813695 814795 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 813695..814795 Staphylococcus carnosus subsp. carnosus TM300 7551992 YP_002633912.1 CDS carB NC_012121.1 814788 817961 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 814788..817961 Staphylococcus carnosus subsp. carnosus TM300 7551989 YP_002633913.1 CDS pyrK NC_012121.1 818149 818913 D (P46536) Dihydroorotate dehydrogenase electron transfer subunit,InterPro: Oxidoreductase FAD/NAD(P)-binding; Hypothetical protein; putative dihydroorotate dehydrogenase, electron transfer subunit 818149..818913 Staphylococcus carnosus subsp. carnosus TM300 7551990 YP_002633914.1 CDS pyrD NC_012121.1 818910 819827 D (Q8RG85) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD),InterPro: Dihydroorotate dehydrogenase 1; Hypothetical protein; dihydroorotate dehydrogenase, catalytic subunit 818910..819827 Staphylococcus carnosus subsp. carnosus TM300 7551998 YP_002633915.1 CDS pyrF NC_012121.1 819827 820531 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 819827..820531 Staphylococcus carnosus subsp. carnosus TM300 7551993 YP_002633916.1 CDS pyrE NC_012121.1 820533 821144 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 820533..821144 Staphylococcus carnosus subsp. carnosus TM300 7551995 YP_002633917.1 CDS Sca_0822 NC_012121.1 821167 821358 D Hypothetical protein; hypothetical protein 821167..821358 Staphylococcus carnosus subsp. carnosus TM300 7551994 YP_002633918.1 CDS Sca_0823 NC_012121.1 821704 822105 D (Q9P997) V-type ATP synthase alpha chain (EC 3.6.3.14) (V-type ATPase subunit A) [Contains: Tac atpA intein (Tac VMA intein)]; Hypothetical protein; hypothetical protein 821704..822105 Staphylococcus carnosus subsp. carnosus TM300 7550293 YP_002633919.1 CDS capC NC_012121.1 822257 823033 D (P96717) Putative protein-tyrosine phosphatase ywqE (EC 3.1.3.48),InterPro: PHP domain C-terminal region; Hypothetical protein; putative tyrosine-protein phosphatase capC 822257..823033 Staphylococcus carnosus subsp. carnosus TM300 7550294 YP_002633920.1 CDS Sca_0825 NC_012121.1 823112 824830 R (Q8CCP0) Serologically defined colon cancer antigen,InterPro: Fibronectin-binding A N-terminal; Hypothetical protein; putative fibronectin/fibrinogen binding protein complement(823112..824830) Staphylococcus carnosus subsp. carnosus TM300 7551453 YP_002633921.1 CDS gmk NC_012121.1 825005 825628 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 825005..825628 Staphylococcus carnosus subsp. carnosus TM300 7550295 YP_002633922.1 CDS rpoZ NC_012121.1 825628 825858 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 825628..825858 Staphylococcus carnosus subsp. carnosus TM300 7551655 YP_002633923.1 CDS Sca_0828 NC_012121.1 825905 826219 R (Q38879) Thioredoxin H-type 2 (TRX-H-2),InterPro: Thioredoxin domain 2; Hypothetical protein; putative thioredoxin complement(825905..826219) Staphylococcus carnosus subsp. carnosus TM300 7550296 YP_002633924.1 CDS coaBC NC_012121.1 826440 827651 D (P44953) Coenzyme A biosynthesis bifunctional protein coaBC (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phospho,InterPro: DNA/pantothenate metabolism flavoprotein; Hypothetical protein; putative Coenzyme A biosynthesis bifunctional protein coaBC 826440..827651 Staphylococcus carnosus subsp. carnosus TM300 7550297 YP_002633925.1 CDS priA NC_012121.1 827652 830060 D (P94461) Primosomal protein N (Replication factor Y),InterPro: Primosomal protein n; Hypothetical protein; putative primosomal replication factor Y 827652..830060 Staphylococcus carnosus subsp. carnosus TM300 7551478 YP_002633926.1 CDS Sca_0831 NC_012121.1 830440 831072 D (P30043) Flavin reductase (EC 1.5.1.30) (FR) (NADPH-dependent diaphorase) (NADPH-flavin reductase) (FLR) (Biliverdin reductase B) (EC 1.3.1.24) (BVR-B) (Biliverdin-IX beta-reductase) (Green heme binding protein) (GHBP); Hypothetical protein; putative NADH-flavin reductase 830440..831072 Staphylococcus carnosus subsp. carnosus TM300 7551960 YP_002633927.1 CDS capC NC_012121.1 831269 831994 D (Q54518) Protein-tyrosine phosphatase cpsB (EC 3.1.3.48),InterPro: PHP domain C-terminal region; Hypothetical protein; putative phosphotyrosine-protein phosphatase 831269..831994 Staphylococcus carnosus subsp. carnosus TM300 7550298 YP_002633928.1 CDS Sca_0833 NC_012121.1 832110 832427 D Hypothetical protein; hypothetical protein 832110..832427 Staphylococcus carnosus subsp. carnosus TM300 7551454 YP_002633929.1 CDS Sca_0834 NC_012121.1 832528 832824 R Hypothetical protein; hypothetical protein complement(832528..832824) Staphylococcus carnosus subsp. carnosus TM300 7550299 YP_002633930.1 CDS def NC_012121.1 833025 833513 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 833025..833513 Staphylococcus carnosus subsp. carnosus TM300 7550300 YP_002633931.1 CDS Sca_0836 NC_012121.1 833506 834438 D (Q8CSW1) Methionyl-tRNA formyltransferase (EC 2.1.2.9),InterPro: Methionyl-tRNA formyltransferase; Hypothetical protein; putative methionyl-tRNA formyltransferase 833506..834438 Staphylococcus carnosus subsp. carnosus TM300 7551519 YP_002633932.1 CDS Sca_0837 NC_012121.1 834438 835745 D (P36929) Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase),InterPro: Sun protein; Hypothetical protein; putative NusB_Sun RNA binding protein 834438..835745 Staphylococcus carnosus subsp. carnosus TM300 7550301 YP_002633933.1 CDS Sca_0838 NC_012121.1 835745 836839 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 835745..836839 Staphylococcus carnosus subsp. carnosus TM300 7550302 YP_002633934.1 CDS Sca_0839 NC_012121.1 836846 837589 D (P75525) Putative protein phosphatase (EC 3.1.3.16),InterPro: Protein phosphatase 2C-like; Hypothetical protein; putative Serine/threonine phosphatase, family 2C protein 836846..837589 Staphylococcus carnosus subsp. carnosus TM300 7550303 YP_002633935.1 CDS pknB NC_012121.1 837586 839628 D (O34507) Probable serine/threonine-protein kinase yloP (EC 2.7.11.1),InterPro: Protein kinase; Hypothetical protein; putative serine/threonine-protein kinase PknB 837586..839628 Staphylococcus carnosus subsp. carnosus TM300 7550304 YP_002633936.1 CDS Sca_0841 NC_012121.1 839766 840641 D (Q8CSV8) Probable GTPase engC (EC 3.6.1.-),InterPro: Protein of unknown function DUF258; Hypothetical protein; hypothetical protein 839766..840641 Staphylococcus carnosus subsp. carnosus TM300 7551942 YP_002633937.1 CDS rpe NC_012121.1 840641 841294 D (O34557) Ribulose-phosphate 3-epimerase (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E),InterPro: Ribulose-phosphate 3-epimerase; Hypothetical protein; putative ribulose-5-phosphate 3-epimerase 840641..841294 Staphylococcus carnosus subsp. carnosus TM300 7550305 YP_002633938.1 CDS Sca_0843 NC_012121.1 841319 841960 D (P41888) Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK) (Thiamine kinase),InterPro: Thiamin pyrophosphokinase catalytic domain; Hypothetical protein; putative thiamine pyrophosphokinase 841319..841960 Staphylococcus carnosus subsp. carnosus TM300 7552038 YP_002633939.1 CDS Sca_0844 NC_012121.1 842043 842405 R (P93703) Cytochrome P450 71C3 (EC 1.14.-.-); Hypothetical protein; hypothetical protein complement(842043..842405) Staphylococcus carnosus subsp. carnosus TM300 7550306 YP_002633940.1 CDS rpmB NC_012121.1 842588 842776 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(842588..842776) Staphylococcus carnosus subsp. carnosus TM300 7550307 YP_002633941.1 CDS Sca_0846 NC_012121.1 843111 843485 D (O34318) Hypothetical protein yloU,InterPro: Protein of unknown function DUF322; Hypothetical protein; hypothetical protein 843111..843485 Staphylococcus carnosus subsp. carnosus TM300 7552063 YP_002633942.1 CDS Sca_0847 NC_012121.1 843498 845141 D (P75231) Hypothetical protein MG369 homolog (G12_orf558),InterPro: Dak phosphatase domain; Hypothetical protein; dihydroxyacetone kinase family protein 843498..845141 Staphylococcus carnosus subsp. carnosus TM300 7550308 YP_002633943.1 CDS sdaB NC_012121.1 845342 846007 D (O34635) Probable L-serine dehydratase beta chain (EC 4.3.1.17) (L-serine deaminase) (SDH) (L-SD),InterPro: Iron-sulfur-dependent L-serine dehydratase beta subunit; Hypothetical protein; putative L-serine dehydratase subunit beta 845342..846007 Staphylococcus carnosus subsp. carnosus TM300 7550309 YP_002633944.1 CDS sdaA NC_012121.1 846023 846892 D (P16095) L-serine dehydratase 1 (EC 4.3.1.17) (L-serine deaminase 1) (SDH 1) (L-SD1),InterPro: L-serine dehydratase alpha subunit; Hypothetical protein; putative L-serine dehydratase, iron-sulfur-dependent subunit alpha 846023..846892 Staphylococcus carnosus subsp. carnosus TM300 7552116 YP_002633945.1 CDS recG NC_012121.1 846894 848951 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 846894..848951 Staphylococcus carnosus subsp. carnosus TM300 7552115 YP_002633946.1 CDS fapR NC_012121.1 849095 849658 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 849095..849658 Staphylococcus carnosus subsp. carnosus TM300 7552013 YP_002633947.1 CDS plsX NC_012121.1 849660 850646 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 849660..850646 Staphylococcus carnosus subsp. carnosus TM300 7551561 YP_002633948.1 CDS fabD NC_012121.1 850639 851565 D (P71019) Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (MCT),InterPro: Acyl transferase domain; Hypothetical protein; putative malonyl CoA-acyl carrier protein transacylase 850639..851565 Staphylococcus carnosus subsp. carnosus TM300 7551943 YP_002633949.1 CDS fabG NC_012121.1 851558 852295 D (Q99QK7) 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; 3-oxoacyl-ACP reductase 851558..852295 Staphylococcus carnosus subsp. carnosus TM300 7551552 YP_002633950.1 CDS acpP NC_012121.1 852430 852663 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 852430..852663 Staphylococcus carnosus subsp. carnosus TM300 7551553 YP_002633951.1 CDS rnc NC_012121.1 852795 853523 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 852795..853523 Staphylococcus carnosus subsp. carnosus TM300 7551363 YP_002633952.1 CDS smc NC_012121.1 853566 857135 D (P51834) Chromosome partition protein smc,InterPro: Structural maintenance of chromosome protein SMC C-terminal; Hypothetical protein; putative chromosome segregation protein SMC 853566..857135 Staphylococcus carnosus subsp. carnosus TM300 7552030 YP_002633953.1 CDS ftsY NC_012121.1 857132 858400 D (P51835) Cell division protein ftsY homolog,InterPro: Cell division transporter substrate-binding protein FtsY; Hypothetical protein; putative cell division protein FtsY 857132..858400 Staphylococcus carnosus subsp. carnosus TM300 7552136 YP_002633954.1 CDS Sca_0859 NC_012121.1 858387 858719 D (Q99UN4) Hypothetical UPF0122 protein SAV1236/SA1079/MW1119,InterPro: Putative helix-turn-helix protein YlxM/p13-like; Hypothetical protein; putative DNA-binding protein 858387..858719 Staphylococcus carnosus subsp. carnosus TM300 7551598 YP_002633955.1 CDS ffh' NC_012121.1 858738 859553 D (P37105) Signal recognition particle protein (Fifty-four homolog),InterPro: GTP-binding signal recognition particle (SRP54) G-domain,Note: Similar to N-terminal part of ffh [Staphylococcus haemolyticus JCSC1435] (BAE04986); Hypothetical protein; hypothetical protein 858738..859553 Staphylococcus carnosus subsp. carnosus TM300 7550310 YP_002633956.1 CDS ffh'' NC_012121.1 859564 860106 D (P37105) Signal recognition particle protein (Fifty-four homolog),InterPro: Signal peptide binding (SRP54) M-domain,Note: Similar to C-terminal part of ffh [Staphylococcus aureus subsp. aureus N315] (BAB42332); Hypothetical protein; hypothetical protein 859564..860106 Staphylococcus carnosus subsp. carnosus TM300 7551572 YP_002633957.1 CDS Sca_0862 NC_012121.1 860401 860709 D (P54940) Hypothetical protein yxeA precursor,InterPro: Conserved hypothetical protein 1655; Hypothetical protein; hypothetical protein 860401..860709 Staphylococcus carnosus subsp. carnosus TM300 7551573 YP_002633958.1 CDS rpsP NC_012121.1 860964 861242 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 860964..861242 Staphylococcus carnosus subsp. carnosus TM300 7550311 YP_002633959.1 CDS rimM NC_012121.1 861375 861851 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 861375..861851 Staphylococcus carnosus subsp. carnosus TM300 7552090 YP_002633960.1 CDS trmD NC_012121.1 861853 862590 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 861853..862590 Staphylococcus carnosus subsp. carnosus TM300 7552027 YP_002633961.1 CDS rplS NC_012121.1 862694 863044 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 862694..863044 Staphylococcus carnosus subsp. carnosus TM300 7552198 YP_002633962.1 CDS Sca_0867 NC_012121.1 863511 867665 D (Q8CQD9) Accumulation-associated protein precursor,InterPro: Surface protein from Gram-positive cocci anchor region; Hypothetical protein; putative cell wall-anchored protein 863511..867665 Staphylococcus carnosus subsp. carnosus TM300 7552056 YP_002633963.1 CDS Sca_0868 NC_012121.1 867776 869407 R Hypothetical protein; hypothetical protein complement(867776..869407) Staphylococcus carnosus subsp. carnosus TM300 7550312 YP_002633964.1 CDS Sca_0869 NC_012121.1 869799 872414 R Hypothetical protein; hypothetical protein complement(869799..872414) Staphylococcus carnosus subsp. carnosus TM300 7550313 YP_002633965.1 CDS Sca_0870 NC_012121.1 872671 873528 D (P15028) Iron(III) dicitrate-binding periplasmic protein precursor,InterPro: Periplasmic binding protein; Hypothetical protein; putative ABC transporter siderophore binding protein 872671..873528 Staphylococcus carnosus subsp. carnosus TM300 7550314 YP_002633966.1 CDS Sca_0871 NC_012121.1 873684 874091 D (Q9PCR2) DNA mismatch repair protein mutS; Hypothetical protein; putative effector domain of transcriptional regulator 873684..874091 Staphylococcus carnosus subsp. carnosus TM300 7550315 YP_002633967.1 CDS Sca_0872 NC_012121.1 874143 875033 R (Q99390) Hypothetical 31.7 kDa protein in traX-finO intergenic region (ORFC),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; putative alpha/beta hydrolase superfamily protein complement(874143..875033) Staphylococcus carnosus subsp. carnosus TM300 7550316 YP_002633968.1 CDS Sca_0873 NC_012121.1 875087 875839 R (P52598) Putative HTH-type transcriptional regulator ygbI,InterPro: Bacterial regulatory protein DeoR family; Hypothetical protein; putative DeoR family transcriptional regulator complement(875087..875839) Staphylococcus carnosus subsp. carnosus TM300 7550317 YP_002633969.1 CDS Sca_0874 NC_012121.1 876114 876776 D (P71747) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase),InterPro: ABC transporter; Hypothetical protein; putative ABC transporter nucleotide-binding domain 876114..876776 Staphylococcus carnosus subsp. carnosus TM300 7550318 YP_002633970.1 CDS Sca_0875 NC_012121.1 876766 878391 D (Q44123) Ferric transport system permease protein fbpB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative ABC transporter permease 876766..878391 Staphylococcus carnosus subsp. carnosus TM300 7550319 YP_002633971.1 CDS Sca_0876 NC_012121.1 878388 879203 D (P43951) Protein HI0131 precursor; Hypothetical protein; hypothetical protein 878388..879203 Staphylococcus carnosus subsp. carnosus TM300 7550320 YP_002633972.1 CDS Sca_0877 NC_012121.1 879200 879400 D Weak SD sequence; Hypothetical protein; hypothetical protein 879200..879400 Staphylococcus carnosus subsp. carnosus TM300 7550321 YP_002633973.1 CDS Sca_0878 NC_012121.1 879414 880508 D (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT); Hypothetical protein; putative aminotransferase, class V 879414..880508 Staphylococcus carnosus subsp. carnosus TM300 7550322 YP_002633974.1 CDS Sca_0879 NC_012121.1 880513 881298 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 880513..881298 Staphylococcus carnosus subsp. carnosus TM300 7550323 YP_002633975.1 CDS rbgA NC_012121.1 881429 882298 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 881429..882298 Staphylococcus carnosus subsp. carnosus TM300 7550324 YP_002633976.1 CDS rnhB NC_012121.1 882298 883083 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 882298..883083 Staphylococcus carnosus subsp. carnosus TM300 7550325 YP_002633977.1 CDS sucC NC_012121.1 883288 884454 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 883288..884454 Staphylococcus carnosus subsp. carnosus TM300 7552031 YP_002633978.1 CDS sucD NC_012121.1 884475 885389 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 884475..885389 Staphylococcus carnosus subsp. carnosus TM300 7552153 YP_002633979.1 CDS topA NC_012121.1 886070 888139 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 886070..888139 Staphylococcus carnosus subsp. carnosus TM300 7552154 YP_002633980.1 CDS gid NC_012121.1 888224 889534 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 888224..889534 Staphylococcus carnosus subsp. carnosus TM300 7552194 YP_002633981.1 CDS xerC NC_012121.1 889657 890547 D (Q7ZAJ4) Tyrosine recombinase xerC,InterPro: Phage integrase; Hypothetical protein; putative site-specific recombinase XerC 889657..890547 Staphylococcus carnosus subsp. carnosus TM300 7551626 YP_002633982.1 CDS hslV NC_012121.1 890550 891089 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 890550..891089 Staphylococcus carnosus subsp. carnosus TM300 7552300 YP_002633983.1 CDS hslU NC_012121.1 891174 892580 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 891174..892580 Staphylococcus carnosus subsp. carnosus TM300 7551706 YP_002633984.1 CDS codY NC_012121.1 892613 893386 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 892613..893386 Staphylococcus carnosus subsp. carnosus TM300 7551705 YP_002633985.1 CDS rpsB NC_012121.1 893570 894352 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 893570..894352 Staphylococcus carnosus subsp. carnosus TM300 7551481 YP_002633986.1 CDS tsf NC_012121.1 894590 895471 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 894590..895471 Staphylococcus carnosus subsp. carnosus TM300 7552075 YP_002633987.1 CDS pyrH NC_012121.1 895606 896328 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 895606..896328 Staphylococcus carnosus subsp. carnosus TM300 7552272 YP_002633988.1 CDS frr NC_012121.1 896346 896900 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 896346..896900 Staphylococcus carnosus subsp. carnosus TM300 7551997 YP_002633989.1 CDS uppS NC_012121.1 897081 897848 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 897081..897848 Staphylococcus carnosus subsp. carnosus TM300 7551591 YP_002633990.1 CDS cdsA NC_012121.1 897866 898648 D (O31752) Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase),InterPro: Phosphatidate cytidylyltransferase; Hypothetical protein; putative phosphatidate cytidylyltransferase 897866..898648 Staphylococcus carnosus subsp. carnosus TM300 7552282 YP_002633991.1 CDS Sca_0897 NC_012121.1 898882 900162 D (Q99UL0) Hypothetical zinc metalloprotease SAV1262/SA1105 (EC 3.4.24.-),InterPro: Putative membrane-associated zinc metalloprotease; Hypothetical protein; putative PDZ_metalloprotease family protein 898882..900162 Staphylococcus carnosus subsp. carnosus TM300 7551467 YP_002633992.1 CDS proS NC_012121.1 900184 901884 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 900184..901884 Staphylococcus carnosus subsp. carnosus TM300 7550326 YP_002633993.1 CDS polC NC_012121.1 902214 906527 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 902214..906527 Staphylococcus carnosus subsp. carnosus TM300 7551962 YP_002633994.1 CDS Sca_0900 NC_012121.1 906678 907145 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 906678..907145 Staphylococcus carnosus subsp. carnosus TM300 7551947 YP_002633995.1 CDS nusA NC_012121.1 907167 908480 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 907167..908480 Staphylococcus carnosus subsp. carnosus TM300 7550327 YP_002633996.1 CDS Sca_0902 NC_012121.1 908499 908783 D (P32728) Hypothetical protein ylxR (ORF3),InterPro: Protein of unknown function DUF448; Hypothetical protein; hypothetical protein 908499..908783 Staphylococcus carnosus subsp. carnosus TM300 7551873 YP_002633997.1 CDS Sca_0903 NC_012121.1 908780 909085 D (P32729) Probable ribosomal protein ylxQ,InterPro: Ribosomal protein L7Ae/L30e/S12e/Gadd45; Hypothetical protein; putative ribosomal_L7Ae protein family protein 908780..909085 Staphylococcus carnosus subsp. carnosus TM300 7550328 YP_002633998.1 CDS infB NC_012121.1 909102 911225 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 909102..911225 Staphylococcus carnosus subsp. carnosus TM300 7550329 YP_002633999.1 CDS set NC_012121.1 911431 912195 D (P06886) Toxic shock syndrome toxin-1 precursor (TSST-1),InterPro: Staphylococcal/Streptococcal toxin beta-grasp; Hypothetical protein; exotoxin-like protein 911431..912195 Staphylococcus carnosus subsp. carnosus TM300 7551721 YP_002634000.1 CDS Sca_0906 NC_012121.1 912329 912706 D (P17412) Fumarate reductase flavoprotein subunit (EC 1.3.99.1),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; putative member of glyoxalase/bleomycin resistance protein family 912329..912706 Staphylococcus carnosus subsp. carnosus TM300 7552127 YP_002634001.1 CDS ugpQ' NC_012121.1 912898 913269 D (P10908) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),Similar ro N-terminal part of: glycerophosphoryl diester phosphodiesterase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300260). ,subsp. saprophyticus ATCC 15305]; Hypothetical protein; glycerophosphoryldiester phosphodiesterase (fragment 1) 912898..913269 Staphylococcus carnosus subsp. carnosus TM300 7550330 YP_002634002.1 CDS ugpQ'' NC_012121.1 913375 913641 D (P10908) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),Similar to C-terminal part of:glycerophosphoryl diester phosphodiesterase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300260); Hypothetical protein; glycerophosphoryldiester phosphodiesterase (fragment 2) 913375..913641 Staphylococcus carnosus subsp. carnosus TM300 7552278 YP_002634003.1 CDS Sca_0909 NC_012121.1 913676 914986 D (P32135) Hypothetical protein yihN; Hypothetical protein; hypothetical protein 913676..914986 Staphylococcus carnosus subsp. carnosus TM300 7552279 YP_002634004.1 CDS rbfA NC_012121.1 915362 915709 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 915362..915709 Staphylococcus carnosus subsp. carnosus TM300 7550331 YP_002634005.1 CDS truB NC_012121.1 915858 916772 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 915858..916772 Staphylococcus carnosus subsp. carnosus TM300 7552008 YP_002634006.1 CDS ribC NC_012121.1 916788 917762 D (P54575) Riboflavin biosynthesis protein ribC [Includes: Riboflavin kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)],InterPro: Riboflavin kinase / FAD synthetase; Hypothetical protein; putative riboflavin kinase / FAD synthase RibC 916788..917762 Staphylococcus carnosus subsp. carnosus TM300 7552269 YP_002634007.1 CDS rpsO NC_012121.1 917887 918156 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 917887..918156 Staphylococcus carnosus subsp. carnosus TM300 7552023 YP_002634008.1 CDS pnpA NC_012121.1 918321 920426 D (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Vegetative protein 15) (VEG15),InterPro: 3 exoribonuclease; Hypothetical protein; polynucleotide phosphorylase/polyadenylase 918321..920426 Staphylococcus carnosus subsp. carnosus TM300 7552089 YP_002634009.1 CDS Sca_0915 NC_012121.1 920601 922274 D (Q45493) Hypothetical UPF0036 protein ykqC,InterPro: Conserved hypothetical protein MG423; Hypothetical protein; putative metallo-beta-lactamase superfamily hydrolase 920601..922274 Staphylococcus carnosus subsp. carnosus TM300 7551945 YP_002634010.1 CDS ftsK NC_012121.1 922534 924933 D (Q99UJ6) DNA translocase ftsK,InterPro: Cell divisionFtsK/SpoIIIE protein; Hypothetical protein; putative DNA translocase FtsK (SpoIIIE) 922534..924933 Staphylococcus carnosus subsp. carnosus TM300 7550332 YP_002634011.1 CDS Sca_0918 NC_012121.1 924936 925658 D (O31761) Hypothetical transcriptional regulator ymfC; Hypothetical protein; GntR family transcriptional regulator 924936..925658 Staphylococcus carnosus subsp. carnosus TM300 7551597 YP_002634012.1 CDS Sca_0919 NC_012121.1 925673 926947 D (Q92IX7) Hypothetical zinc protease RC0293 (EC 3.4.99.-),InterPro: Peptidase M16 inactive; Hypothetical protein; hypothetical protein 925673..926947 Staphylococcus carnosus subsp. carnosus TM300 7550333 YP_002634013.1 CDS Sca_0920 NC_012121.1 926944 928230 D (P71006) Putative zinc-protease albF (EC 3.4.99.-) (Antilisterial bacteriocin subtilosin biosynthesis protein albF),InterPro: Peptidase M16 inactive,pfam00675: Peptidase_M16, Insulinase (only 78% aligned); Hypothetical protein; hypothetical protein 926944..928230 Staphylococcus carnosus subsp. carnosus TM300 7550334 YP_002634014.1 CDS Sca_0921 NC_012121.1 928230 928937 D (Q9X248) 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative short-chain dehydrogenase 928230..928937 Staphylococcus carnosus subsp. carnosus TM300 7550335 YP_002634015.1 CDS Sca_0922 NC_012121.1 929066 929905 D (Q9LZ25) Probable disease resistance protein At5g04720; Hypothetical protein; hypothetical protein 929066..929905 Staphylococcus carnosus subsp. carnosus TM300 7550336 YP_002634016.1 CDS Sca_0923 NC_012121.1 929927 930325 D (Q57065) Hypothetical protein HI0367,Predicted TM helix at N-terminus; Hypothetical protein; putative DNA-binding protein 929927..930325 Staphylococcus carnosus subsp. carnosus TM300 7550337 YP_002634017.1 CDS pgsA NC_012121.1 930356 930934 D (Q99UI9) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase) (PGP synthase),InterPro: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Hypothetical protein; putative phosphatidylglycerophosphate synthase 930356..930934 Staphylococcus carnosus subsp. carnosus TM300 7550338 YP_002634018.1 CDS Sca_0925 NC_012121.1 931085 932227 D (Q97D94) CinA-like protein,InterPro: Competence-damaged protein; Hypothetical protein; hypothetical protein 931085..932227 Staphylococcus carnosus subsp. carnosus TM300 7551935 YP_002634019.1 CDS recA NC_012121.1 932399 933466 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 932399..933466 Staphylococcus carnosus subsp. carnosus TM300 7550339 YP_002634020.1 CDS Sca_0927 NC_012121.1 933741 935300 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 933741..935300 Staphylococcus carnosus subsp. carnosus TM300 7552011 YP_002634021.1 CDS Sca_0928 NC_012121.1 935408 936400 R (P45290) Hypothetical protein HI1643,InterPro: Conserved hypothetical protein 698; Hypothetical protein; hypothetical protein complement(935408..936400) Staphylococcus carnosus subsp. carnosus TM300 7550340 YP_002634022.1 CDS Sca_0929 NC_012121.1 936522 937346 D (O33812) Putative HTH-type transcriptional regulator in lacR 5region (Fragment),InterPro: LysR substrate binding domain; Hypothetical protein; LysR family transcriptional regulator 936522..937346 Staphylococcus carnosus subsp. carnosus TM300 7550341 YP_002634023.1 CDS Sca_0930 NC_012121.1 937412 937630 R (Q57789) Hypothetical protein MJ0343; Hypothetical protein; hypothetical protein complement(937412..937630) Staphylococcus carnosus subsp. carnosus TM300 7550342 YP_002634024.1 CDS Sca_0931 NC_012121.1 937891 938691 D (P47488) Hypothetical protein MG246,InterPro: Conserved hypothetical protein 282,InterPro: Metallo-phosphoesterase; Hypothetical protein; putative metallo-phosphoesterase family protein 937891..938691 Staphylococcus carnosus subsp. carnosus TM300 7550343 YP_002634025.1 CDS Sca_0932 NC_012121.1 938798 940573 D (O27112) 2-oxoglutarate synthase subunit korA (EC 1.2.7.3) (2-ketoglutarate oxidoreductase alpha chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase alpha subunit),InterPro: Pyruvate flavodoxin/ferredoxin oxidoreductase N-terminal; Hypothetical protein; putative pyruvate flavodoxin/ferredoxin oxidoreductase 938798..940573 Staphylococcus carnosus subsp. carnosus TM300 7550344 YP_002634026.1 CDS Sca_0933 NC_012121.1 940560 941426 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 940560..941426 Staphylococcus carnosus subsp. carnosus TM300 7550345 YP_002634027.1 CDS Sca_0934 NC_012121.1 941627 942148 D (P56605) Hypothetical protein yoeB; Hypothetical protein; hypothetical protein 941627..942148 Staphylococcus carnosus subsp. carnosus TM300 7550346 YP_002634028.1 CDS Sca_0935 NC_012121.1 942230 942520 D (P72699) Hypothetical UPF0045 protein sll0230; Hypothetical protein; hypothetical protein 942230..942520 Staphylococcus carnosus subsp. carnosus TM300 7550347 YP_002634029.1 CDS appA NC_012121.1 942711 944294 D (P42061) Oligopeptide-binding protein appA precursor,InterPro: Bacterial extracellular solute-binding protein family 5; Hypothetical protein; putative oligopeptide-binding protein AppA 942711..944294 Staphylococcus carnosus subsp. carnosus TM300 7550348 YP_002634030.1 CDS appD' NC_012121.1 944670 945482 D (P42064) Oligopeptide transport ATP-binding protein appD,InterPro: ABC transporter,Truncated at N-terminus by about 17 aa.; Hypothetical protein; oligopeptide transport ATP-binding protein appD 944670..945482 Staphylococcus carnosus subsp. carnosus TM300 7551397 YP_002634031.1 CDS appF NC_012121.1 945495 946481 D (P42065) Oligopeptide transport ATP-binding protein appF,InterPro: ABC transporter; Hypothetical protein; putative oligopeptide transport system ATP-binding protein AppF 945495..946481 Staphylococcus carnosus subsp. carnosus TM300 7551400 YP_002634032.1 CDS appB NC_012121.1 946478 947443 D (P37316) Dipeptide transport system permease protein dppB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative oligopeptide transport system permease AppB 946478..947443 Staphylococcus carnosus subsp. carnosus TM300 7551401 YP_002634033.1 CDS appC NC_012121.1 947456 948355 D (P42063) Oligopeptide transport system permease protein appC,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative oligopeptide transport system permease AppC 947456..948355 Staphylococcus carnosus subsp. carnosus TM300 7551398 YP_002634034.1 CDS Sca_0941 NC_012121.1 948517 950058 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 948517..950058 Staphylococcus carnosus subsp. carnosus TM300 7551399 YP_002634035.1 CDS Sca_0942 NC_012121.1 950058 950414 D (P28706) DNA repair protein rad13; Hypothetical protein; hypothetical protein 950058..950414 Staphylococcus carnosus subsp. carnosus TM300 7550349 YP_002634036.1 CDS Sca_0943 NC_012121.1 950446 950943 D Hypothetical protein; hypothetical protein 950446..950943 Staphylococcus carnosus subsp. carnosus TM300 7550350 YP_002634037.1 CDS glpQ NC_012121.1 950988 951950 R (P37965) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),InterPro: Glycerophosphoryl diester phosphodiesterase; Hypothetical protein; putative glycerophosphoryl diester phosphodiesterase complement(950988..951950) Staphylococcus carnosus subsp. carnosus TM300 7550351 YP_002634038.1 CDS mutS NC_012121.1 952257 954866 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 952257..954866 Staphylococcus carnosus subsp. carnosus TM300 7551644 YP_002634039.1 CDS mutL NC_012121.1 954880 956820 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 954880..956820 Staphylococcus carnosus subsp. carnosus TM300 7551829 YP_002634040.1 CDS glpP NC_012121.1 956832 957365 D (P30300) Glycerol uptake operon antiterminator regulatory protein,InterPro: Glycerol-3-phosphate responsive antiterminator; Hypothetical protein; putative glycerol uptake operon antiterminator regulatory protein 956832..957365 Staphylococcus carnosus subsp. carnosus TM300 7551827 YP_002634041.1 CDS glpF NC_012121.1 957534 958349 D (Q9X1E3) Probable glycerol uptake facilitator protein,InterPro: MIP family; Hypothetical protein; glycerol uptake facilitator 957534..958349 Staphylococcus carnosus subsp. carnosus TM300 7551642 YP_002634042.1 CDS glpK NC_012121.1 958523 960028 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 958523..960028 Staphylococcus carnosus subsp. carnosus TM300 7551640 YP_002634043.1 CDS glpD NC_012121.1 960205 961875 D (P18158) Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.99.5),InterPro: FAD dependent oxidoreductase; Hypothetical protein; aerobic glycerol-3-phosphate dehydrogenase 960205..961875 Staphylococcus carnosus subsp. carnosus TM300 7551641 YP_002634044.1 CDS Sca_0951 NC_012121.1 962065 963015 D (Q8R431) Monoglyceride lipase (EC 3.1.1.23),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; putative hydrolase 962065..963015 Staphylococcus carnosus subsp. carnosus TM300 7551639 YP_002634045.1 CDS miaA NC_012121.1 963002 963952 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 963002..963952 Staphylococcus carnosus subsp. carnosus TM300 7550352 YP_002634046.1 CDS Sca_0953 NC_012121.1 963954 964169 D (O31796) Hfq protein,InterPro: Host factor Hfq; Hypothetical protein; putative Hfq protein 963954..964169 Staphylococcus carnosus subsp. carnosus TM300 7551783 YP_002634047.1 CDS Sca_0954 NC_012121.1 964451 964924 R (O48646) Probable phospholipid hydroperoxide glutathione peroxidase mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1),InterPro: Glutathione peroxidase; Hypothetical protein; putative glutathione peroxidase complement(964451..964924) Staphylococcus carnosus subsp. carnosus TM300 7550353 YP_002634048.1 CDS Sca_0955 NC_012121.1 965072 966334 D (P25519) GTP-binding protein hflX,InterPro: Restriction endonuclease; Hypothetical protein; GTP-binding protein HflX 965072..966334 Staphylococcus carnosus subsp. carnosus TM300 7550354 YP_002634049.1 CDS Sca_0956 NC_012121.1 966335 967573 D (P45624) Hypothetical 33.9 kDa protein in glnA 5region (ORF306); Hypothetical protein; putative aluminium resistance protein family protein 966335..967573 Staphylococcus carnosus subsp. carnosus TM300 7550355 YP_002634050.1 CDS glnA NC_012121.1 967673 969013 R (Q59812) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS),InterPro: Glutamine synthetase type I; Hypothetical protein; glutamine synthetase complement(967673..969013) Staphylococcus carnosus subsp. carnosus TM300 7550356 YP_002634051.1 CDS Sca_0958 NC_012121.1 969032 969397 R (P37582) HTH-type transcriptional regulator glnR,InterPro: Bacterial regulatory protein MerR family; Hypothetical protein; putative MerR family transcriptional regulator complement(969032..969397) Staphylococcus carnosus subsp. carnosus TM300 7551636 YP_002634052.1 CDS Sca_0959 NC_012121.1 969624 969983 R Hypothetical protein; hypothetical protein complement(969624..969983) Staphylococcus carnosus subsp. carnosus TM300 7550357 YP_002634053.1 CDS Sca_0960 NC_012121.1 970268 970897 D (Q8CPD8) Cardiolipin synthetase 1 (EC 2.7.8.-) (Cardiolipin synthase 1) (CL synthase 1),Similar to N-terminus of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE04899); Hypothetical protein; hypothetical protein 970268..970897 Staphylococcus carnosus subsp. carnosus TM300 7550358 YP_002634054.1 CDS Sca_0961 NC_012121.1 971022 971837 D (Q99SG9) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CL synthase),InterPro: Phospholipase D/Transphosphatidylase,Similar to C-terminus of putative cardiolipin synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300885); Hypothetical protein; hypothetical protein 971022..971837 Staphylococcus carnosus subsp. carnosus TM300 7550359 YP_002634055.1 CDS Sca_0962 NC_012121.1 971884 972114 R Hypothetical protein; hypothetical protein complement(971884..972114) Staphylococcus carnosus subsp. carnosus TM300 7550360 YP_002634056.1 CDS nuc NC_012121.1 972249 972791 D (P43269) Thermonuclease precursor (EC 3.1.31.1) (TNase) (Micrococcal nuclease) (Staphylococcal nuclease),InterPro: Staphylococcus nuclease (SNase-like); Hypothetical protein; thermonuclease NucH/NucI 972249..972791 Staphylococcus carnosus subsp. carnosus TM300 7550361 YP_002634057.1 CDS Sca_0964 NC_012121.1 972920 973801 D (P15028) Iron(III) dicitrate-binding periplasmic protein precursor,InterPro: Periplasmic binding protein,No signal peptide / lipoprotein-specif cleavage site!; Hypothetical protein; transport system binding protein 972920..973801 Staphylococcus carnosus subsp. carnosus TM300 7551870 YP_002634058.1 CDS Sca_0965 NC_012121.1 973872 974729 R hypothetical protein complement(973872..974729) Staphylococcus carnosus subsp. carnosus TM300 7550362 YP_002634059.1 CDS Sca_0966 NC_012121.1 974972 975343 R Weak similarity to staphylococcal accessory regulator R; Hypothetical protein; hypothetical protein complement(974972..975343) Staphylococcus carnosus subsp. carnosus TM300 7550363 YP_002634060.1 CDS Sca_0967 NC_012121.1 975537 976007 D Hypothetical protein; hypothetical protein 975537..976007 Staphylococcus carnosus subsp. carnosus TM300 7550364 YP_002634061.1 CDS Sca_0968 NC_012121.1 976105 976692 D Hypothetical protein; hypothetical protein 976105..976692 Staphylococcus carnosus subsp. carnosus TM300 7550365 YP_002634062.1 CDS Sca_0969 NC_012121.1 976783 978162 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(976783..978162) Staphylococcus carnosus subsp. carnosus TM300 7550366 YP_002634063.1 CDS hom NC_012121.1 978354 979634 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 978354..979634 Staphylococcus carnosus subsp. carnosus TM300 7550367 YP_002634064.1 CDS thrC NC_012121.1 979640 980707 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 979640..980707 Staphylococcus carnosus subsp. carnosus TM300 7551701 YP_002634065.1 CDS thrB NC_012121.1 980707 981621 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 980707..981621 Staphylococcus carnosus subsp. carnosus TM300 7552185 YP_002634066.1 CDS Sca_0973 NC_012121.1 981677 982483 D (P54947) Hypothetical protein yxeH,InterPro: Cof protein; Hypothetical protein; putative HAD superfamily hydrolase 981677..982483 Staphylococcus carnosus subsp. carnosus TM300 7552184 YP_002634067.1 CDS Sca_0974 NC_012121.1 982534 982848 R Hypothetical protein; hypothetical protein complement(982534..982848) Staphylococcus carnosus subsp. carnosus TM300 7550368 YP_002634068.1 CDS Sca_0975 NC_012121.1 982966 984429 R (P25737) Lysine-specific permease,InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid permease complement(982966..984429) Staphylococcus carnosus subsp. carnosus TM300 7550369 YP_002634069.1 CDS rpmG NC_012121.1 984742 984891 R 50S ribosomal protein L33 complement(984742..984891) Staphylococcus carnosus subsp. carnosus TM300 7550370 YP_002634070.1 CDS rpsN NC_012121.1 985150 985419 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 985150..985419 Staphylococcus carnosus subsp. carnosus TM300 7552068 YP_002634071.1 CDS guaC NC_012121.1 985606 986583 D (Q8CPC9) GMP reductase (EC 1.7.1.7) (Guanosine 5-monophosphate oxidoreductase) (Guanosine monophosphate reductase),InterPro: IMP dehydrogenase/GMP reductase; Hypothetical protein; guanosine 5'-monophosphate oxidoreductase 985606..986583 Staphylococcus carnosus subsp. carnosus TM300 7552087 YP_002634072.1 CDS Sca_0979 NC_012121.1 986606 987625 D Hypothetical protein; hypothetical protein 986606..987625 Staphylococcus carnosus subsp. carnosus TM300 7551672 YP_002634073.1 CDS lexA NC_012121.1 987719 988342 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(987719..988342) Staphylococcus carnosus subsp. carnosus TM300 7550371 YP_002634074.1 CDS Sca_0981 NC_012121.1 988486 988719 D (P24180) Acriflavine resistance protein E precursor (Protein envC); Hypothetical protein; hypothetical protein 988486..988719 Staphylococcus carnosus subsp. carnosus TM300 7551748 YP_002634075.1 CDS Sca_0982 NC_012121.1 988853 989095 D (Q8CSP4) Hypothetical UPF0291 protein SE1024; Hypothetical protein; hypothetical protein 988853..989095 Staphylococcus carnosus subsp. carnosus TM300 7550372 YP_002634076.1 CDS tkt NC_012121.1 989297 991285 D (Q8CPC7) Transketolase (EC 2.2.1.1) (TK),InterPro: Bacterial transketolase; Hypothetical protein; putative transketolase 989297..991285 Staphylococcus carnosus subsp. carnosus TM300 7550373 YP_002634077.1 CDS Sca_0984 NC_012121.1 991474 991704 D (Q8E3V6) Hypothetical UPF0154 protein gbs1650,InterPro: Protein of unknown function UPF0154; Hypothetical protein; hypothetical protein 991474..991704 Staphylococcus carnosus subsp. carnosus TM300 7552190 YP_002634078.1 CDS Sca_0985 NC_012121.1 991994 992461 D (P45710) CcdC protein; Hypothetical protein; hypothetical protein 991994..992461 Staphylococcus carnosus subsp. carnosus TM300 7550374 YP_002634079.1 CDS Sca_0986 NC_012121.1 992564 992650 D Hypothetical protein; hypothetical protein 992564..992650 Staphylococcus carnosus subsp. carnosus TM300 7550375 YP_002634080.1 CDS Sca_0987 NC_012121.1 992744 993871 D (P13457) Nuclease sbcCD subunit D,InterPro: Exonuclease SbcD; Hypothetical protein; putative exonuclease 992744..993871 Staphylococcus carnosus subsp. carnosus TM300 7550376 YP_002634081.1 CDS Sca_0988 NC_012121.1 993868 996903 D (O83635) Nuclease sbcCD subunit C,InterPro: ABC transporter; Hypothetical protein; putative DNA repair ATPase 993868..996903 Staphylococcus carnosus subsp. carnosus TM300 7550377 YP_002634082.1 CDS mscL NC_012121.1 996955 997377 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(996955..997377) Staphylococcus carnosus subsp. carnosus TM300 7550378 YP_002634083.1 CDS opuD NC_012121.1 997766 999400 D (P54417) Glycine betaine transporter opuD,InterPro: BCCT transporter; Hypothetical protein; glycine betaine transporter opuD 997766..999400 Staphylococcus carnosus subsp. carnosus TM300 7551812 YP_002634084.1 CDS citB NC_012121.1 999660 1002365 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 999660..1002365 Staphylococcus carnosus subsp. carnosus TM300 7551894 YP_002634085.1 CDS Sca_0992 NC_012121.1 1002485 1002946 D (P44679) Hypothetical protein HI0386,InterPro: 4-hydroxybenzoyl-CoA thioesterase; Hypothetical protein; putative thioesterase superfamily protein 1002485..1002946 Staphylococcus carnosus subsp. carnosus TM300 7551468 YP_002634086.1 CDS Sca_0993 NC_012121.1 1003001 1003318 R InterPro: Uncharacterised conserved protein UCP034852; Hypothetical protein; hypothetical protein complement(1003001..1003318) Staphylococcus carnosus subsp. carnosus TM300 7550379 YP_002634087.1 CDS Sca_0994 NC_012121.1 1003525 1004133 R (P59253) Hypothetical UPF0078 protein SE1035,InterPro: Protein of unknown function DUF205; Hypothetical protein; hypothetical protein complement(1003525..1004133) Staphylococcus carnosus subsp. carnosus TM300 7550380 YP_002634088.1 CDS parE NC_012121.1 1004424 1006424 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1004424..1006424 Staphylococcus carnosus subsp. carnosus TM300 7550381 YP_002634089.1 CDS parC NC_012121.1 1006421 1008847 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1006421..1008847 Staphylococcus carnosus subsp. carnosus TM300 7551904 YP_002634090.1 CDS Sca_0997 NC_012121.1 1009139 1010602 D (Q45068) Amino acid carrier protein alsT,InterPro: Sodium:alanine symporter; Hypothetical protein; putative amino acid carrier protein 1009139..1010602 Staphylococcus carnosus subsp. carnosus TM300 7551903 YP_002634091.1 CDS glcT NC_012121.1 1010782 1011645 D (P11989) Cryptic beta-glucoside bgl operon antiterminator,InterPro: Transcriptional antiterminator bglG,>gi|2632149|emb|CAA74358.1| antiterminator [Staphylococcus carnosus], Length = 287,Score = 569 bits (1467), Expect = e-161,Identities = 287/287 (100%), Positives = 287/287 (100%); Hypothetical protein; transcription antiterminator GlcT 1010782..1011645 Staphylococcus carnosus subsp. carnosus TM300 7550382 YP_002634092.1 CDS glcA NC_012121.1 1011768 1013795 D gi|628925|pir||S46952 phosphotransferase system enzyme II (EC 2.7.1.69), glucose-specific, factor IIA -Staphylococcus carnosus; Hypothetical protein; glucose-specific phosphotransferase system enzyme II, factor IIA 1011768..1013795 Staphylococcus carnosus subsp. carnosus TM300 7551632 YP_002634093.1 CDS glcB NC_012121.1 1013926 1016004 D gi|2144427|pir||S46953 phosphotransferase system enzyme II (EC 2.7.1.69), glucose-specific, factor IIB -Staphylococcus carnosus,(P20166) PTS system glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component) (Phosphotransferase enzyme II ABC component) (EC 2.7.1.69) (EII-Glc/EIII-Glc),InterPro: Phosphotransferase system EIIC; Hypothetical protein; glucose-specific phosphotransferase system enzym II, factor IIB 1013926..1016004 Staphylococcus carnosus subsp. carnosus TM300 7551629 YP_002634094.1 CDS Sca_1001 NC_012121.1 1016219 1017445 D (O32095) Hypothetical UPF0118 protein yueF,InterPro: Protein of unknown function UPF0118; Hypothetical protein; putative permease 1016219..1017445 Staphylococcus carnosus subsp. carnosus TM300 7551631 YP_002634095.1 CDS fmtC NC_012121.1 1017619 1020144 D InterPro: Protein of unknown function DUF470; Hypothetical protein; oxacillin resistance-related FmtC protein 1017619..1020144 Staphylococcus carnosus subsp. carnosus TM300 7550383 YP_002634096.1 CDS cysD NC_012121.1 1020488 1021768 D (O13326) O-acetylhomoserine (Thiol)-lyase (EC 2.5.1.49) (O-acetylhomoserine sulfhydrylase) (OAH sulfhydrylase) (Homocysteine synthase),InterPro: O-acetylhomoserine/O-acetylserine sulfhydrylase; Hypothetical protein; putative O-acetylhomoserine 1020488..1021768 Staphylococcus carnosus subsp. carnosus TM300 7551583 YP_002634097.1 CDS metA NC_012121.1 1021770 1022663 D (Q9CEC5) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine O-transsuccinylase) (HTS),InterPro: Homoserine O-succinyltransferase; Hypothetical protein; putative homoserine O-succinyltransferase 1021770..1022663 Staphylococcus carnosus subsp. carnosus TM300 7551500 YP_002634098.1 CDS msrA NC_012121.1 1022740 1023255 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1022740..1023255) Staphylococcus carnosus subsp. carnosus TM300 7551774 YP_002634099.1 CDS Sca_1006 NC_012121.1 1023397 1024413 D (Q9K6Q8) Membrane-bound protein lytR,InterPro: Cell envelope-related transcriptional attenuator; Hypothetical protein; putative cell envelope-related transcriptional attenuator 1023397..1024413 Staphylococcus carnosus subsp. carnosus TM300 7551813 YP_002634100.1 CDS Sca_1007 NC_012121.1 1024473 1024658 R (Q927S9) Probable tautomerase lin2709 (EC 5.3.2.-),InterPro: 4-oxalocrotonate tautomerase; Hypothetical protein; putative keto-enol isomerase complement(1024473..1024658) Staphylococcus carnosus subsp. carnosus TM300 7550384 YP_002634101.1 CDS Sca_1008 NC_012121.1 1024819 1025742 D (Q81M86) DNA polymerase IV (EC 2.7.7.7) (Pol IV),InterPro: UMUC-like DNA-repair protein,Similar to N-terminus of ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus MRSA252] (YP_040782); Hypothetical protein; ImpB/MucB/SamB family protein (fragment 1) 1024819..1025742 Staphylococcus carnosus subsp. carnosus TM300 7550385 YP_002634102.1 CDS Sca_1009 NC_012121.1 1025708 1026082 D (Q9K9A8) DNA polymerase IV 2 (EC 2.7.7.7) (Pol IV 2),Similar to C-terminal part of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE04854); Hypothetical protein; ImpB/MucB/SamB family protein (fragment 2) 1025708..1026082 Staphylococcus carnosus subsp. carnosus TM300 7550386 YP_002634103.1 CDS tyrA NC_012121.1 1026134 1027228 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1026134..1027228) Staphylococcus carnosus subsp. carnosus TM300 7550387 YP_002634104.1 CDS Sca_1011 NC_012121.1 1027364 1028404 D (P77585) Hypothetical protein ypdE,InterPro: Peptidase M42; Hypothetical protein; putative peptidase 1027364..1028404 Staphylococcus carnosus subsp. carnosus TM300 7552275 YP_002634105.1 CDS trpE NC_012121.1 1028957 1030366 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1028957..1030366 Staphylococcus carnosus subsp. carnosus TM300 7550388 YP_002634106.1 CDS trpG NC_012121.1 1030363 1030986 D (P06193) Para-aminobenzoate synthase glutamine amidotransferase component II (EC 6.3.5.8) (ADC synthase),InterPro: Glutamine amidotransferase of anthranilate synthase; Hypothetical protein; putative anthranilate synthase component II 1030363..1030986 Staphylococcus carnosus subsp. carnosus TM300 7552264 YP_002634107.1 CDS trpD NC_012121.1 1030931 1031947 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1030931..1031947 Staphylococcus carnosus subsp. carnosus TM300 7552266 YP_002634108.1 CDS trpC NC_012121.1 1031940 1032707 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1031940..1032707 Staphylococcus carnosus subsp. carnosus TM300 7552263 YP_002634109.1 CDS trpF NC_012121.1 1032712 1033341 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1032712..1033341 Staphylococcus carnosus subsp. carnosus TM300 7552262 YP_002634110.1 CDS trpB NC_012121.1 1033338 1034567 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1033338..1034567 Staphylococcus carnosus subsp. carnosus TM300 7552265 YP_002634111.1 CDS trpA NC_012121.1 1034560 1035312 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1034560..1035312 Staphylococcus carnosus subsp. carnosus TM300 7552261 YP_002634112.1 CDS femA NC_012121.1 1035617 1036873 D (P14304) Factor essential for expression of methicillin resistance,InterPro: Methicillin resistance protein; Hypothetical protein; factor essential for expression of methicillin resistance FemA 1035617..1036873 Staphylococcus carnosus subsp. carnosus TM300 7552260 YP_002634113.1 CDS femB NC_012121.1 1036900 1038159 D (Q8CPA8) Protein femB,InterPro: Methicillin resistance protein; Hypothetical protein; factor essential for expression of methicillin resistance FemB 1036900..1038159 Staphylococcus carnosus subsp. carnosus TM300 7551569 YP_002634114.1 CDS Sca_1021 NC_012121.1 1038317 1038838 R (P23900) Glycerol uptake/efflux facilitator protein; Hypothetical protein; hypothetical protein complement(1038317..1038838) Staphylococcus carnosus subsp. carnosus TM300 7551570 YP_002634115.1 CDS opp-2F NC_012121.1 1040240 1040932 R (P45051) Oligopeptide transport ATP-binding protein oppF,InterPro: ABC transporter; Hypothetical protein; putative oligopeptide transporter ATPase Opp-2F complement(1040240..1040932) Staphylococcus carnosus subsp. carnosus TM300 7550389 YP_002634116.1 CDS opp-2D NC_012121.1 1040925 1041710 R (P33593) Nickel transport ATP-binding protein nikD,InterPro: ABC transporter; Hypothetical protein; putative oligopeptide transporter ATPase Opp-2D complement(1040925..1041710) Staphylococcus carnosus subsp. carnosus TM300 7551882 YP_002634117.1 CDS opp-2C NC_012121.1 1041703 1042518 R (P94312) Dipeptide transport system permease protein dppC,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative oligopeptide transporter membrane permease Opp-2c complement(1041703..1042518) Staphylococcus carnosus subsp. carnosus TM300 7551881 YP_002634118.1 CDS opp-2B NC_012121.1 1042515 1043468 R (P75798) Hypothetical ABC transporter permease protein yliC,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative oligopeptide transporter membrane permease Opp-2B complement(1042515..1043468) Staphylococcus carnosus subsp. carnosus TM300 7551880 YP_002634119.1 CDS Sca_1026 NC_012121.1 1043501 1043812 R (P26906) Dipeptide-binding protein dppE precursor,Similar to C-terminal part (aa 396 - 491) of putative extracellular solute-binding lipoprotein [Staphylococcus aureus subsp. aureus MSSA476] (CAG41981): length 491 aa; Hypothetical protein; hypothetical protein complement(1043501..1043812) Staphylococcus carnosus subsp. carnosus TM300 7551879 YP_002634120.1 CDS Sca_1027 NC_012121.1 1043760 1044983 R (P75797) Putative binding protein yliB precursor,InterPro: Bacterial extracellular solute-binding protein family 5,Similar to N-terminus (aa 1 - 395) of putative extracellular solute-binding lipoprotein [Staphylococcus aureus subsp. aureus MSSA476] (CAG41981): length 491 aa; Hypothetical protein; hypothetical protein complement(1043760..1044983) Staphylococcus carnosus subsp. carnosus TM300 7550390 YP_002634121.1 CDS Sca_1028 NC_012121.1 1045146 1045490 R Hypothetical protein; hypothetical protein complement(1045146..1045490) Staphylococcus carnosus subsp. carnosus TM300 7550391 YP_002634122.1 CDS Sca_1029 NC_012121.1 1045658 1047472 D (Q9CEV7) Oligoendopeptidase F homolog (EC 3.4.24.-),InterPro: Peptidase M3; Hypothetical protein; putative peptidase family M3 protein 1045658..1047472 Staphylococcus carnosus subsp. carnosus TM300 7550392 YP_002634123.1 CDS Sca_1030 NC_012121.1 1047530 1048177 R (O32488) Phosphate transport system protein phoU,InterPro: PhoU; Hypothetical protein; putative phosphate uptake regulator protein complement(1047530..1048177) Staphylococcus carnosus subsp. carnosus TM300 7550393 YP_002634124.1 CDS pstB NC_012121.1 1048177 1049040 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1048177..1049040) Staphylococcus carnosus subsp. carnosus TM300 7550394 YP_002634125.1 CDS pstA NC_012121.1 1049091 1050020 R (P46340) Probable ABC transporter permease protein yqgI,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative phosphate ABC transporter permease complement(1049091..1050020) Staphylococcus carnosus subsp. carnosus TM300 7551966 YP_002634126.1 CDS Sca_1033 NC_012121.1 1050022 1050948 R (Q9CNJ6) Phosphate transport system permease protein pstA,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative ABC transporter permease complement(1050022..1050948) Staphylococcus carnosus subsp. carnosus TM300 7551965 YP_002634127.1 CDS Sca_1034 NC_012121.1 1051081 1052016 R (Q55200) Protein sphX precursor,InterPro: Bacterial extracellular solute-binding protein family 1; Hypothetical protein; putative phosphate transport system substrate-binding protein complement(1051081..1052016) Staphylococcus carnosus subsp. carnosus TM300 7550395 YP_002634128.1 CDS Sca_1035 NC_012121.1 1052437 1053345 R Hypothetical protein; hypothetical protein complement(1052437..1053345) Staphylococcus carnosus subsp. carnosus TM300 7550396 YP_002634129.1 CDS Sca_1036 NC_012121.1 1053548 1055149 D (P75790) Hypothetical ABC transporter ATP-binding protein ybiT,InterPro: ABC transporter,Interpro: Hypothetical ABC transporter ATP-binding protein; Hypothetical protein; putative ABC transporter ATP-binding protein 1053548..1055149 Staphylococcus carnosus subsp. carnosus TM300 7550397 YP_002634130.1 CDS lysC NC_012121.1 1055671 1056873 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1055671..1056873 Staphylococcus carnosus subsp. carnosus TM300 7550398 YP_002634131.1 CDS asd NC_012121.1 1056958 1057947 D (O67716) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA dehydrogenase) (ASADH),InterPro: Aspartate-semialdehyde dehydrogenase USG-1 related; Hypothetical protein; putative aspartate semialdehyde dehydrogenase 1056958..1057947 Staphylococcus carnosus subsp. carnosus TM300 7551761 YP_002634132.1 CDS dapA NC_012121.1 1057950 1058834 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1057950..1058834 Staphylococcus carnosus subsp. carnosus TM300 7551426 YP_002634133.1 CDS dapB NC_012121.1 1058834 1059562 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1058834..1059562 Staphylococcus carnosus subsp. carnosus TM300 7551511 YP_002634134.1 CDS dapD NC_012121.1 1059585 1060304 D (Q9ZDX0) 2345-tetrahydropyridine-26-dicarboxylate N-succinyltransferase (EC 2.3.1.117) (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase),InterPro: Bacterial transferase hexapeptide repeat; Hypothetical protein; tetrahydrodipicolinate acetyltransferase 1059585..1060304 Staphylococcus carnosus subsp. carnosus TM300 7551512 YP_002634135.1 CDS Sca_1042 NC_012121.1 1060421 1061578 D (P54970) IAA-amino acid hydrolase homolog 2 precursor,InterPro: Peptidase M20/M25/M40; Hypothetical protein; putative peptidase (peptidase family M20/M25/M40) 1060421..1061578 Staphylococcus carnosus subsp. carnosus TM300 7551513 YP_002634136.1 CDS alr NC_012121.1 1061581 1062657 D (Q99U86) Alanine racemase 2 (EC 5.1.1.1),InterPro: Protein of unknown function UPF0001; Hypothetical protein; putative alanine racemase 1061581..1062657 Staphylococcus carnosus subsp. carnosus TM300 7550399 YP_002634137.1 CDS lysA NC_012121.1 1062659 1063921 D (P23630) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP decarboxylase),InterPro: Diaminopimelate decarboxylase; Hypothetical protein; putative diaminopimelate decarboxylase 1062659..1063921 Staphylococcus carnosus subsp. carnosus TM300 7551390 YP_002634138.1 CDS csp NC_012121.1 1064074 1064274 R (P62169) Cold shock-like protein cspC,InterPro: Cold-shock DNA-binding domain; Hypothetical protein; putative cold shock protein complement(1064074..1064274) Staphylococcus carnosus subsp. carnosus TM300 7551760 YP_002634139.1 CDS Sca_1046 NC_012121.1 1064625 1064933 R Hypothetical protein; hypothetical protein complement(1064625..1064933) Staphylococcus carnosus subsp. carnosus TM300 7551487 YP_002634140.1 CDS Sca_1047 NC_012121.1 1065093 1065362 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1065093..1065362 Staphylococcus carnosus subsp. carnosus TM300 7550400 YP_002634141.1 CDS Sca_1048 NC_012121.1 1065378 1065995 D (P37467) XpaC protein; Hypothetical protein; 5-bromo-4-chloroindolyl phosphate hydrolysis protein XpaC 1065378..1065995 Staphylococcus carnosus subsp. carnosus TM300 7550401 YP_002634142.1 CDS Sca_1049 NC_012121.1 1066016 1067143 D (Q8CP87) TelA-like protein SE1089,InterPro: Toxic anion resistance; Hypothetical protein; putative toxic anion resistance (TelA) family protein 1066016..1067143 Staphylococcus carnosus subsp. carnosus TM300 7550402 YP_002634143.1 CDS Sca_1050 NC_012121.1 1067272 1068192 D (P39074) Protein bmrU,InterPro: Conserved hypothetical protein 147; Hypothetical protein; hypothetical protein 1067272..1068192 Staphylococcus carnosus subsp. carnosus TM300 7550403 YP_002634144.1 CDS brnQ NC_012121.1 1068241 1069584 R (O34545) Branched-chain amino acid transport system carrier protein braB (Branched-chain amino acid uptake carrier braB),InterPro: Branched-chain amino acid transport system II carrier protein; Hypothetical protein; putative branched-chain amino acid carrier complement(1068241..1069584) Staphylococcus carnosus subsp. carnosus TM300 7550404 YP_002634145.1 CDS Sca_1052 NC_012121.1 1069857 1071746 R InterPro: von Willebrand factor type A; Hypothetical protein; hypothetical protein complement(1069857..1071746) Staphylococcus carnosus subsp. carnosus TM300 7551449 YP_002634146.1 CDS Sca_1053 NC_012121.1 1071759 1072550 R (Q02441) Denitrification regulatory protein nirQ,InterPro: AAA ATPase; Hypothetical protein; hypothetical protein complement(1071759..1072550) Staphylococcus carnosus subsp. carnosus TM300 7550405 YP_002634147.1 CDS Sca_1054 NC_012121.1 1072641 1072847 R (Q61703) Inter-alpha-trypsin inhibitor heavy chain H2 precursor (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2); Hypothetical protein; hypothetical protein complement(1072641..1072847) Staphylococcus carnosus subsp. carnosus TM300 7550406 YP_002634148.1 CDS Sca_1055 NC_012121.1 1072874 1073689 R Hypothetical protein; hypothetical protein complement(1072874..1073689) Staphylococcus carnosus subsp. carnosus TM300 7550407 YP_002634149.1 CDS Sca_1056 NC_012121.1 1073859 1074038 D Hypothetical protein; hypothetical protein 1073859..1074038 Staphylococcus carnosus subsp. carnosus TM300 7550408 YP_002634150.1 CDS odhB NC_012121.1 1074306 1075583 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1074306..1075583) Staphylococcus carnosus subsp. carnosus TM300 7550409 YP_002634151.1 CDS sucA NC_012121.1 1075595 1078390 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1075595..1078390) Staphylococcus carnosus subsp. carnosus TM300 7551878 YP_002634152.1 CDS Sca_1059 NC_012121.1 1078587 1079951 R (O34638) Hypothetical sensor-like histidine kinase ykoH (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; putative sensor protein histidine kinase complement(1078587..1079951) Staphylococcus carnosus subsp. carnosus TM300 7551877 YP_002634153.1 CDS Sca_1060 NC_012121.1 1079948 1080610 R (O78428) Probable transcriptional regulator ycf27 (OmpR-like protein),InterPro: Response regulator receiver; Hypothetical protein; putative response regulator protein complement(1079948..1080610) Staphylococcus carnosus subsp. carnosus TM300 7550410 YP_002634154.1 CDS Sca_1061 NC_012121.1 1081017 1081640 R InterPro: PA-phosphatase related phosphoesterase; Hypothetical protein; putative membrane integrated acid phosphatase family protein complement(1081017..1081640) Staphylococcus carnosus subsp. carnosus TM300 7550411 YP_002634155.1 CDS murG NC_012121.1 1081641 1082729 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(1081641..1082729) Staphylococcus carnosus subsp. carnosus TM300 7550412 YP_002634156.1 CDS Sca_1063 NC_012121.1 1082741 1083253 R InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative acetyltransferase complement(1082741..1083253) Staphylococcus carnosus subsp. carnosus TM300 7551825 YP_002634157.1 CDS Sca_1064 NC_012121.1 1083267 1084736 R (Q55669) Carboxyl-terminal processing protease precursor (EC 3.4.21.102),InterPro: Carboxyl-terminal protease; Hypothetical protein; putative protease complement(1083267..1084736) Staphylococcus carnosus subsp. carnosus TM300 7550413 YP_002634158.1 CDS Sca_1065 NC_012121.1 1084893 1085114 R Hypothetical protein; hypothetical protein complement(1084893..1085114) Staphylococcus carnosus subsp. carnosus TM300 7550414 YP_002634159.1 CDS crr NC_012121.1 1085114 1085614 R (Q8CP79) PTS system glucose-specific IIA component (EIIA-Glc) (Glucose-permease IIA component) (Phosphotransferase enzyme II A component) (EC 2.7.1.69) (EIII-Glc),InterPro: Sugar-specific permease EIIA 1 domain; Hypothetical protein; PTS system, glucose-specific IIA component complement(1085114..1085614) Staphylococcus carnosus subsp. carnosus TM300 7550415 YP_002634160.1 CDS Sca_1067 NC_012121.1 1085617 1086057 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1085617..1086057) Staphylococcus carnosus subsp. carnosus TM300 7551484 YP_002634161.1 CDS Sca_1068 NC_012121.1 1086050 1086577 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1086050..1086577) Staphylococcus carnosus subsp. carnosus TM300 7550416 YP_002634162.1 CDS Sca_1069 NC_012121.1 1086676 1087512 R (Q8NWR0) Hypothetical UPF0230 protein MW1315,InterPro: DegV; Hypothetical protein; hypothetical protein complement(1086676..1087512) Staphylococcus carnosus subsp. carnosus TM300 7550417 YP_002634163.1 CDS dfrA NC_012121.1 1087525 1088007 R (Q59908) Dihydrofolate reductase (EC 1.5.1.3) (DHFR),InterPro: Dihydrofolate reductase; Hypothetical protein; dihydrofolate reductase complement(1087525..1088007) Staphylococcus carnosus subsp. carnosus TM300 7550418 YP_002634164.1 CDS thyA NC_012121.1 1088051 1089004 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1088051..1089004) Staphylococcus carnosus subsp. carnosus TM300 7551521 YP_002634165.1 CDS Sca_1072 NC_012121.1 1089106 1089540 R (P54170) Hypothetical protein yphP; Hypothetical protein; hypothetical protein complement(1089106..1089540) Staphylococcus carnosus subsp. carnosus TM300 7552188 YP_002634166.1 CDS Sca_1073 NC_012121.1 1089625 1090743 R (P54169) Hypothetical protein ypgR,InterPro: PBS lyase HEAT-like repeat; Hypothetical protein; hypothetical protein complement(1089625..1090743) Staphylococcus carnosus subsp. carnosus TM300 7550419 YP_002634167.1 CDS Sca_1074 NC_012121.1 1091158 1091865 D (P54163) Hypothetical protein ypdP,InterPro: Protein of unknown function DUF165; Hypothetical protein; hypothetical protein 1091158..1091865 Staphylococcus carnosus subsp. carnosus TM300 7550420 YP_002634168.1 CDS Sca_1075 NC_012121.1 1091910 1092302 D (P54162) 14.7 kDa ribonuclease H-like protein,InterPro: RNase H; Hypothetical protein; hypothetical protein 1091910..1092302 Staphylococcus carnosus subsp. carnosus TM300 7550421 YP_002634169.1 CDS Sca_1076 NC_012121.1 1092353 1093240 R (P52026) DNA polymerase I (EC 2.7.7.7) (POL I),InterPro: 5-3 exonuclease,Similar to N-terminal part of DNA PolI (responsible for 5'-3'-exonucleolytic activity); Hypothetical protein; putative 5'-3' exonuclease complement(1092353..1093240) Staphylococcus carnosus subsp. carnosus TM300 7550422 YP_002634170.1 CDS Sca_1077 NC_012121.1 1093261 1096707 R (P54159) Hypothetical protein ypbR; Hypothetical protein; hypothetical protein complement(1093261..1096707) Staphylococcus carnosus subsp. carnosus TM300 7550423 YP_002634171.1 CDS Sca_1078 NC_012121.1 1096858 1097754 R (P27844) Protein rarD,InterPro: RarD protein; Hypothetical protein; hypothetical protein complement(1096858..1097754) Staphylococcus carnosus subsp. carnosus TM300 7550424 YP_002634172.1 CDS Sca_1079 NC_012121.1 1097780 1098904 R (P44524) Hypothetical UPF0020/UPF0064 protein HI0116,InterPro: Putative RNA methylase; Hypothetical protein; putative RNA methylase complement(1097780..1098904) Staphylococcus carnosus subsp. carnosus TM300 7550425 YP_002634173.1 CDS Sca_1080 NC_012121.1 1099521 1099850 R (P50839) Hypothetical protein ypsB,InterPro: DivIVA (only 75% aligned); Hypothetical protein; hypothetical protein complement(1099521..1099850) Staphylococcus carnosus subsp. carnosus TM300 7550426 YP_002634174.1 CDS Sca_1081 NC_012121.1 1099863 1100429 R (P50838) Hypothetical protein ypsA,Weak SD sequence; Hypothetical protein; hypothetical protein complement(1099863..1100429) Staphylococcus carnosus subsp. carnosus TM300 7550427 YP_002634175.1 CDS Sca_1082 NC_012121.1 1100422 1100763 R (P53273) Hypothetical 117.0 kDa protein in ASN2-PHB1 intergenic region; Hypothetical protein; hypothetical protein complement(1100422..1100763) Staphylococcus carnosus subsp. carnosus TM300 7550428 YP_002634176.1 CDS recU NC_012121.1 1101024 1101650 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1101024..1101650 Staphylococcus carnosus subsp. carnosus TM300 7550429 YP_002634177.1 CDS pbp2 NC_012121.1 1101647 1103917 D (P39793) Penicillin-binding protein 1A/1B (PBP1) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)],InterPro: Penicillin-binding protein transpeptidase domain; Hypothetical protein; penicillin-binding protein 2 1101647..1103917 Staphylococcus carnosus subsp. carnosus TM300 7552018 YP_002634178.1 CDS Sca_1085 NC_012121.1 1103963 1104295 R Hypothetical protein; hypothetical protein complement(1103963..1104295) Staphylococcus carnosus subsp. carnosus TM300 7551905 YP_002634179.1 CDS nth NC_012121.1 1104308 1104979 R (P39788) Probable endonuclease III (EC 4.2.99.18) (DNA-(apurinic or apyrimidinic site) lyase),InterPro: Endonuclease III/Nth; Hypothetical protein; putative endonuclease III complement(1104308..1104979) Staphylococcus carnosus subsp. carnosus TM300 7550430 YP_002634180.1 CDS dnaD NC_012121.1 1104980 1105657 R (P39787) DNA replication protein dnaD,InterPro: DnaD and phage-associated domain; Hypothetical protein; DNA replication protein DnaD complement(1104980..1105657) Staphylococcus carnosus subsp. carnosus TM300 7551868 YP_002634181.1 CDS asnC NC_012121.1 1105755 1107047 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1105755..1107047) Staphylococcus carnosus subsp. carnosus TM300 7551531 YP_002634182.1 CDS Sca_1089 NC_012121.1 1107205 1109892 R (P54394) Probable ATP-dependent helicase dinG homolog,InterPro: DnaQ exonuclease/DinG helicase; Hypothetical protein; hypothetical protein complement(1107205..1109892) Staphylococcus carnosus subsp. carnosus TM300 7551427 YP_002634183.1 CDS birA NC_012121.1 1109908 1110879 R (P42975) BirA bifunctional protein [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)],InterPro: Biotin--acetyl-CoA-carboxylase ligase; Hypothetical protein; putative bifunctional protein [includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase complement(1109908..1110879) Staphylococcus carnosus subsp. carnosus TM300 7550431 YP_002634184.1 CDS pap NC_012121.1 1110866 1112068 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(1110866..1112068) Staphylococcus carnosus subsp. carnosus TM300 7551446 YP_002634185.1 CDS Sca_1092 NC_012121.1 1112071 1113192 R (P42982) Putative glycosyl transferase ypjH (EC 2.-.-.-),InterPro: Glycosyl transferase group 1; Hypothetical protein; putative glycosyltransferase complement(1112071..1113192) Staphylococcus carnosus subsp. carnosus TM300 7551902 YP_002634186.1 CDS Sca_1093 NC_012121.1 1113221 1113538 R (P42979) Hypothetical protein ypjD,InterPro: MazG family protein; Hypothetical protein; putative pyrophosphatase (MazG family) complement(1113221..1113538) Staphylococcus carnosus subsp. carnosus TM300 7550432 YP_002634187.1 CDS Sca_1094 NC_012121.1 1113665 1114363 R InterPro: Putative neutral zinc metallopeptidase 2; Hypothetical protein; hypothetical protein complement(1113665..1114363) Staphylococcus carnosus subsp. carnosus TM300 7550433 YP_002634188.1 CDS Sca_1095 NC_012121.1 1114390 1115004 R (P54392) Hypothetical protein ypjA; Hypothetical protein; hypothetical protein complement(1114390..1115004) Staphylococcus carnosus subsp. carnosus TM300 7550434 YP_002634189.1 CDS Sca_1096 NC_012121.1 1115009 1115566 R (Q99U27) Hypothetical UPF0302 protein SAV1462/SA1295/MW1352; Hypothetical protein; hypothetical protein complement(1115009..1115566) Staphylococcus carnosus subsp. carnosus TM300 7550435 YP_002634190.1 CDS Sca_1097 NC_012121.1 1115585 1116832 R (P54389) Hypothetical protein ypiA,InterPro: TPR repeat; Hypothetical protein; hypothetical protein complement(1115585..1116832) Staphylococcus carnosus subsp. carnosus TM300 7550436 YP_002634191.1 CDS aroA NC_012121.1 1116837 1118135 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1116837..1118135) Staphylococcus carnosus subsp. carnosus TM300 7550437 YP_002634192.1 CDS aroB NC_012121.1 1118145 1119221 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1118145..1119221) Staphylococcus carnosus subsp. carnosus TM300 7551417 YP_002634193.1 CDS aroC NC_012121.1 1119237 1120403 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1119237..1120403) Staphylococcus carnosus subsp. carnosus TM300 7551419 YP_002634194.1 CDS ndk NC_012121.1 1120627 1121079 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1120627..1121079) Staphylococcus carnosus subsp. carnosus TM300 7551420 YP_002634195.1 CDS gerCC NC_012121.1 1121185 1122141 R (P31114) Heptaprenyl diphosphate synthase component II (EC 2.5.1.30) (HEPPP synthase subunit 2) (Spore germination protein C3),InterPro: Polyprenyl synthetase; Hypothetical protein; putative heptaprenyl diphosphate synthase component II complement(1121185..1122141) Staphylococcus carnosus subsp. carnosus TM300 7551851 YP_002634196.1 CDS ubiE NC_012121.1 1122143 1122868 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1122143..1122868) Staphylococcus carnosus subsp. carnosus TM300 7551625 YP_002634197.1 CDS Sca_1104 NC_012121.1 1122870 1123442 R (P31112) Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) (HEPPP synthase subunit 1) (Spore germination protein C1),Only weak similarity to similar to component A of hexaprenyl diphosphate synthase!; Hypothetical protein; hypothetical protein complement(1122870..1123442) Staphylococcus carnosus subsp. carnosus TM300 7551624 YP_002634198.1 CDS hup NC_012121.1 1123661 1123933 R (P02346) DNA-binding protein HU (DNA-binding protein II) (HB),InterPro: Histone-like bacterial DNA-binding protein; Hypothetical protein; DNA-binding protein HU complement(1123661..1123933) Staphylococcus carnosus subsp. carnosus TM300 7550438 YP_002634199.1 CDS gpsA NC_012121.1 1124104 1125102 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1124104..1125102) Staphylococcus carnosus subsp. carnosus TM300 7551708 YP_002634200.1 CDS engA NC_012121.1 1125131 1126441 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1125131..1126441) Staphylococcus carnosus subsp. carnosus TM300 7551663 YP_002634201.1 CDS rpsA NC_012121.1 1126594 1127772 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1126594..1127772) Staphylococcus carnosus subsp. carnosus TM300 7550439 YP_002634202.1 CDS cmk NC_012121.1 1127992 1128654 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1127992..1128654) Staphylococcus carnosus subsp. carnosus TM300 7550440 YP_002634203.1 CDS Sca_1110 NC_012121.1 1128732 1129706 D (P30363) L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) (L-ASNase),InterPro: Asparaginase/glutaminase; Hypothetical protein; putative L-asparaginase 1128732..1129706 Staphylococcus carnosus subsp. carnosus TM300 7551477 YP_002634204.1 CDS Sca_1111 NC_012121.1 1129762 1130748 R (P50736) Hypothetical protein ypdA,InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; putative pyridine nucleotide-disulfide reductase complement(1129762..1130748) Staphylococcus carnosus subsp. carnosus TM300 7550441 YP_002634205.1 CDS Sca_1112 NC_012121.1 1130892 1132535 R InterPro: Peptidoglycan-binding LysM; Hypothetical protein; putative elastin binding protein complement(1130892..1132535) Staphylococcus carnosus subsp. carnosus TM300 7550442 YP_002634206.1 CDS Sca_1113 NC_012121.1 1132833 1134215 R (P50729) ATP-dependent DNA helicase recQ (EC 3.6.1.-) (Recombination protein S),InterPro: ATP-dependent DNA helicase RecQ,Similar to C-terminal part of E.coli RecQ; Hypothetical protein; putative ATP-dependent DNA helicase complement(1132833..1134215) Staphylococcus carnosus subsp. carnosus TM300 7550443 YP_002634207.1 CDS Sca_1114 NC_012121.1 1134218 1135171 R (P50728) Hypothetical protein ypbB; Hypothetical protein; hypothetical protein complement(1134218..1135171) Staphylococcus carnosus subsp. carnosus TM300 7550444 YP_002634208.1 CDS Sca_1115 NC_012121.1 1135279 1135527 D (P10245) Ferredoxin,InterPro: 3Fe-4S ferredoxin; Hypothetical protein; ferredoxin 1135279..1135527 Staphylococcus carnosus subsp. carnosus TM300 7550445 YP_002634209.1 CDS Sca_1116 NC_012121.1 1135664 1136212 R (P50726) Hypothetical protein ypaA; Hypothetical protein; hypothetical protein complement(1135664..1136212) Staphylococcus carnosus subsp. carnosus TM300 7550446 YP_002634210.1 CDS srrB NC_012121.1 1136482 1138236 R (P35164) Sensor protein resE (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; respiratory response protein SrrB complement(1136482..1138236) Staphylococcus carnosus subsp. carnosus TM300 7550447 YP_002634211.1 CDS srrA NC_012121.1 1138217 1138939 R (P35163) Transcriptional regulatory protein resD,InterPro: Response regulator receiver; Hypothetical protein; respiratory response regulator receiver SrrA complement(1138217..1138939) Staphylococcus carnosus subsp. carnosus TM300 7552144 YP_002634212.1 CDS rluB NC_012121.1 1139254 1139991 R (Q8ZP51) Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase),InterPro: Pseudouridine synthase Rsu; Hypothetical protein; ribosomal large subunit pseudouridine synthase B complement(1139254..1139991) Staphylococcus carnosus subsp. carnosus TM300 7552143 YP_002634213.1 CDS scpB NC_012121.1 1139984 1140532 R (Q7ZAJ3) Segregation and condensation protein B,InterPro: Conserved hypothetical protein 281,Similar to segregation and condensation protein B of B. subtilis:,Score = 116 bits (291), Expect = 2e-26,Identities = 77/181 (42%), Positives = 109/181 (60%), Gaps = 15/181 (8%); Hypothetical protein; putative segregation and condensation protein B complement(1139984..1140532) Staphylococcus carnosus subsp. carnosus TM300 7552028 YP_002634214.1 CDS scpA NC_012121.1 1140516 1141253 R (P60223) Segregation and condensation protein A,InterPro: Protein of unknown function DUF173,Similar to segregation and condensation protein A of B. subtilis:,Score = 167 bits (422), Expect = 7e-67,Identities = 103/241 (42%), Positives = 158/241 (65%),Gaps = 7/241 (2%); Hypothetical protein; putative segregation and condensation protein A complement(1140516..1141253) Staphylococcus carnosus subsp. carnosus TM300 7552113 YP_002634215.1 CDS Sca_1122 NC_012121.1 1141350 1141853 D (P17617) Hypothetical protein ypuF (ORFX6),InterPro: Protein of unknown function DUF309; Hypothetical protein; hypothetical protein 1141350..1141853 Staphylococcus carnosus subsp. carnosus TM300 7552112 YP_002634216.1 CDS xerD NC_012121.1 1141896 1142795 R (Q7ZAJ2) Tyrosine recombinase xerD,InterPro: Phage integrase; Hypothetical protein; putative site-specific recombinase XerD complement(1141896..1142795) Staphylococcus carnosus subsp. carnosus TM300 7550448 YP_002634217.1 CDS fur NC_012121.1 1142818 1143270 R (P54574) Ferric uptake regulation protein (Ferric uptake regulator),InterPro: Ferric-uptake regulator; Hypothetical protein; iron uptake regulatory protein complement(1142818..1143270) Staphylococcus carnosus subsp. carnosus TM300 7552301 YP_002634218.1 CDS nudF NC_012121.1 1143376 1143918 R (P54570) ADP-ribose pyrophosphatase (EC 3.6.1.13) (ADP-ribose diphosphatase) (Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribose phosphohydrolase) (ASPPase),InterPro: NUDIX hydrolase; Hypothetical protein; putative ADP-ribose pyrophosphatase complement(1143376..1143918) Staphylococcus carnosus subsp. carnosus TM300 7551600 YP_002634219.1 CDS Sca_1126 NC_012121.1 1144004 1144912 D (P54569) Hypothetical oxidoreductase yqkF (EC 1.-.-.-),InterPro: Aldo/keto reductase; Hypothetical protein; hypothetical protein 1144004..1144912 Staphylococcus carnosus subsp. carnosus TM300 7551871 YP_002634220.1 CDS Sca_1127 NC_012121.1 1144937 1145704 R (P54554) Hypothetical oxidoreductase yqjQ (EC 1.-.-.-),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative short chain dehydrogenase complement(1144937..1145704) Staphylococcus carnosus subsp. carnosus TM300 7550449 YP_002634221.1 CDS Sca_1128 NC_012121.1 1145853 1146662 D (P54552) Pyrroline-5-carboxylate reductase 2 (EC 1.5.1.2) (P5CR 2) (P5C reductase 2),InterPro: Delta 1-pyrroline-5-carboxylate reductase; Hypothetical protein; putative pyrroline-5-carboxylate reductase 1145853..1146662 Staphylococcus carnosus subsp. carnosus TM300 7550450 YP_002634222.1 CDS rnz NC_012121.1 1146712 1147632 R (Q8NWE6) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNA 3 endonuclease),InterPro: Beta-lactamase-like; Hypothetical protein; putative ribonuclease Z complement(1146712..1147632) Staphylococcus carnosus subsp. carnosus TM300 7550451 YP_002634223.1 CDS zwf NC_012121.1 1147774 1149258 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1147774..1149258 Staphylococcus carnosus subsp. carnosus TM300 7552035 YP_002634224.1 CDS Sca_1131 NC_012121.1 1149419 1150282 D InterPro: Helix-turn-helix AraC type; Hypothetical protein; AraC family transcriptional regulator 1149419..1150282 Staphylococcus carnosus subsp. carnosus TM300 7552306 YP_002634225.1 CDS gnd NC_012121.1 1150336 1151745 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1150336..1151745) Staphylococcus carnosus subsp. carnosus TM300 7550452 YP_002634226.1 CDS Sca_1133 NC_012121.1 1151820 1152953 R Interpro: Peptidase_M20; Hypothetical protein; putative peptidase complement(1151820..1152953) Staphylococcus carnosus subsp. carnosus TM300 7551656 YP_002634227.1 CDS Sca_1134 NC_012121.1 1153015 1153242 D Weak Shine-Dalgarno sequence!; Hypothetical protein; hypothetical protein 1153015..1153242 Staphylococcus carnosus subsp. carnosus TM300 7550453 YP_002634228.1 CDS Sca_1135 NC_012121.1 1153311 1154288 R (P54538) Hypothetical protein yqjA; Hypothetical protein; hypothetical protein complement(1153311..1154288) Staphylococcus carnosus subsp. carnosus TM300 7550454 YP_002634229.1 CDS Sca_1136 NC_012121.1 1154301 1154738 R (P54534) Hypothetical protein yqiW; Hypothetical protein; hypothetical protein complement(1154301..1154738) Staphylococcus carnosus subsp. carnosus TM300 7550455 YP_002634230.1 CDS bmfBB NC_012121.1 1154836 1156131 R (P37942) Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) (Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase) (E2) (Dihydrolipoamide branched chain transacylase),InterPro: Catalytic domain of components of various dehydrogenase complexes; Hypothetical protein; putative dihydrolipoamide branched chain transacylase (E2) complement(1154836..1156131) Staphylococcus carnosus subsp. carnosus TM300 7550456 YP_002634231.1 CDS bfmBAB NC_012121.1 1156150 1157133 R (P37941) 2-oxoisovalerate dehydrogenase beta subunit (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta),InterPro: Transketolase central region; Hypothetical protein; branched-chain alpha-keto acid dehydrogenase E1 component beta chain complement(1156150..1157133) Staphylococcus carnosus subsp. carnosus TM300 7551447 YP_002634232.1 CDS bfmBAA NC_012121.1 1157133 1158125 R (P37940) 2-oxoisovalerate dehydrogenase alpha subunit (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha),InterPro: Dehydrogenase E1 component; Hypothetical protein; putative branched-chain alpha-keto acid dehydrogenase E1 component alpha chain complement(1157133..1158125) Staphylococcus carnosus subsp. carnosus TM300 7551440 YP_002634233.1 CDS bfmBC NC_012121.1 1158144 1159568 R (P54533) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of branched-chain alpha-keto acid dehydrogenase complex) (LPD-Val) (Dihydrolipoamide dehydrogenase),InterPro: Dihydrolipoamide dehydrogenase; Hypothetical protein; putative E3 component of branched-chain alpha-keto acid dehydrogenase complex complement(1158144..1159568) Staphylococcus carnosus subsp. carnosus TM300 7551439 YP_002634234.1 CDS buk NC_012121.1 1159579 1160637 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(1159579..1160637) Staphylococcus carnosus subsp. carnosus TM300 7551441 YP_002634235.1 CDS Sca_1142 NC_012121.1 1160844 1161734 R (Q05624) Phosphate butyryltransferase (EC 2.3.1.19) (Phosphotransbutyrylase),InterPro: Phosphate acetyl/butaryl transferase; Hypothetical protein; putative phosphate butyryltransferase complement(1160844..1161734) Staphylococcus carnosus subsp. carnosus TM300 7551450 YP_002634236.1 CDS recN NC_012121.1 1161761 1163440 R (P17894) DNA repair protein recN (Recombination protein N),InterPro: DNA repair protein RecN; Hypothetical protein; DNA repair protein RecN complement(1161761..1163440) Staphylococcus carnosus subsp. carnosus TM300 7550457 YP_002634237.1 CDS argR NC_012121.1 1163455 1163907 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1163455..1163907) Staphylococcus carnosus subsp. carnosus TM300 7552014 YP_002634238.1 CDS Sca_1145 NC_012121.1 1164149 1165027 R (Q08291) Geranyltranstransferase (EC 2.5.1.10) (Farnesyl-diphosphate synthase) (FPP synthase),InterPro: Polyprenyl synthetase; Hypothetical protein; geranyltranstransferase complement(1164149..1165027) Staphylococcus carnosus subsp. carnosus TM300 7551415 YP_002634239.1 CDS Sca_1146 NC_012121.1 1165020 1165241 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1165020..1165241) Staphylococcus carnosus subsp. carnosus TM300 7550458 YP_002634240.1 CDS xseA NC_012121.1 1165234 1166574 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1165234..1166574) Staphylococcus carnosus subsp. carnosus TM300 7550459 YP_002634241.1 CDS nusB NC_012121.1 1166593 1166979 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1166593..1166979) Staphylococcus carnosus subsp. carnosus TM300 7550460 YP_002634242.1 CDS Sca_1149 NC_012121.1 1167000 1167371 R (P54519) Hypothetical protein yqhY,InterPro: Protein of unknown function DUF322; Hypothetical protein; hypothetical protein complement(1167000..1167371) Staphylococcus carnosus subsp. carnosus TM300 7551874 YP_002634243.1 CDS accC NC_012121.1 1167393 1168745 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1167393..1168745) Staphylococcus carnosus subsp. carnosus TM300 7550461 YP_002634244.1 CDS accB NC_012121.1 1168748 1169218 R (Q9PKR5) Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP),InterPro: Acetyl-CoA biotin carboxyl carrier; Hypothetical protein; putative acetyl-CoA carboxylase biotin carboxyl carrier subunit complement(1168748..1169218) Staphylococcus carnosus subsp. carnosus TM300 7551360 YP_002634245.1 CDS efp NC_012121.1 1169468 1170025 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1169468..1170025) Staphylococcus carnosus subsp. carnosus TM300 7551359 YP_002634246.1 CDS Sca_1153 NC_012121.1 1170053 1171111 R (P54518) Putative peptidase yqhT (EC 3.4.-.-),InterPro: Metallopeptidase M24; Hypothetical protein; putative peptidase complement(1170053..1171111) Staphylococcus carnosus subsp. carnosus TM300 7551547 YP_002634247.1 CDS Sca_1154 NC_012121.1 1171343 1171930 D (P13103) Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain; Hemagglutinin HA2 chain]; Hypothetical protein; hypothetical protein 1171343..1171930 Staphylococcus carnosus subsp. carnosus TM300 7550462 YP_002634248.1 CDS Sca_1155 NC_012121.1 1171962 1172177 D (Q8DQ94) DNA translocase ftsK; Hypothetical protein; hypothetical protein 1171962..1172177 Staphylococcus carnosus subsp. carnosus TM300 7550463 YP_002634249.1 CDS Sca_1156 NC_012121.1 1172226 1173056 R (P54511) Hypothetical protein yqhM,InterPro: Biotin/lipoate A/B protein ligase domain; Hypothetical protein; putative biotin/lipoate A/B protein ligase family protein complement(1172226..1173056) Staphylococcus carnosus subsp. carnosus TM300 7550464 YP_002634250.1 CDS Sca_1157 NC_012121.1 1173239 1173625 D (P54510) Hypothetical protein yqhL,InterPro: Rhodanese-like; Hypothetical protein; putative rhodanese domain-containing protein 1173239..1173625 Staphylococcus carnosus subsp. carnosus TM300 7550465 YP_002634251.1 CDS gcvPB'' NC_012121.1 1173731 1174480 R (Q9K936) Probable glycine dehydrogenase [decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2),similar to C-terminus of glycine dehydrogenase subunit 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305]; Hypothetical protein; glycine dehydrogenase [decarboxylating] subunit 2(fragment 1) complement(1173731..1174480) Staphylococcus carnosus subsp. carnosus TM300 7550466 YP_002634252.1 CDS gcvPB' NC_012121.1 1174456 1175205 R (Q8NWD0) Probable glycine dehydrogenase [decarboxylating] subunit 2 (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2),note: similar to N-terminus of glycine dehydrogenase subunit 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (BAE18365); Hypothetical protein; glycine dehydrogenase [decarboxylating] subunit 2(fragment 1) complement(1174456..1175205) Staphylococcus carnosus subsp. carnosus TM300 7551619 YP_002634253.1 CDS gcvPA NC_012121.1 1175198 1176544 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1175198..1176544) Staphylococcus carnosus subsp. carnosus TM300 7551618 YP_002634254.1 CDS gcvT NC_012121.1 1176565 1177659 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1176565..1177659) Staphylococcus carnosus subsp. carnosus TM300 7551617 YP_002634255.1 CDS aroK NC_012121.1 1177850 1178389 R (Q99TV6) Shikimate kinase (EC 2.7.1.71) (SK),InterPro: Shikimate kinase,Similar to AroK of E. coli:,Score = 73.9 bits (180), Expect = 2e-13,Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 3/149 (2%); Hypothetical protein; putative shikimate kinase complement(1177850..1178389) Staphylococcus carnosus subsp. carnosus TM300 7551620 YP_002634256.1 CDS Sca_1163 NC_012121.1 1179252 1179704 R No detectable SD sequence,Signal peptide predicted by SignalP3.0; Hypothetical protein; hypothetical protein complement(1179252..1179704) Staphylococcus carnosus subsp. carnosus TM300 7551423 YP_002634257.1 CDS Sca_1164 NC_012121.1 1179685 1180011 R (Q8VQ71) ComG operon protein 3 homolog precursor (Late competence protein comGC),InterPro: Bacterial general secretion pathway protein G; Hypothetical protein; general secretion pathway protein G complement(1179685..1180011) Staphylococcus carnosus subsp. carnosus TM300 7550467 YP_002634258.1 CDS Sca_1165 NC_012121.1 1180029 1181102 R (P25954) ComG operon protein,InterPro: Bacterial type II secretion system protein; Hypothetical protein; type II secretion system protein PulF complement(1180029..1181102) Staphylococcus carnosus subsp. carnosus TM300 7550468 YP_002634259.1 CDS Sca_1166 NC_012121.1 1181074 1182048 R (P25953) ComG operon protein,InterPro: Bacterial type II secretion system protein E; Hypothetical protein; type II secretion system protein E complement(1181074..1182048) Staphylococcus carnosus subsp. carnosus TM300 7550469 YP_002634260.1 CDS Sca_1167 NC_012121.1 1182119 1182742 R (P54501) Hypothetical protein yqgX,InterPro: Beta-lactamase-like; Hypothetical protein; putative member of metallo-beta-lactamase superfamily complement(1182119..1182742) Staphylococcus carnosus subsp. carnosus TM300 7550470 YP_002634261.1 CDS Sca_1168 NC_012121.1 1182742 1183071 R (Q56200) Hypothetical UPF0045 protein in glkA 3region (ORF2) (S. xylosus C2A),InterPro: Protein of unknown function DUF77; Hypothetical protein; hypothetical protein complement(1182742..1183071) Staphylococcus carnosus subsp. carnosus TM300 7550471 YP_002634262.1 CDS glcA NC_012121.1 1183071 1184057 R (Q56198) Glucokinase (EC 2.7.1.2) (Glucose kinase),InterPro: ROK family protein (putative glucokinase); Hypothetical protein; glucokinase complement(1183071..1184057) Staphylococcus carnosus subsp. carnosus TM300 7550472 YP_002634263.1 CDS Sca_1170 NC_012121.1 1184057 1184257 R (P54494) Hypothetical protein yqgQ; Hypothetical protein; hypothetical protein complement(1184057..1184257) Staphylococcus carnosus subsp. carnosus TM300 7551630 YP_002634264.1 CDS Sca_1171 NC_012121.1 1184238 1185698 R (P54493) Hypothetical protein yqgP,InterPro: Rhomboid-like protein; Hypothetical protein; hypothetical protein complement(1184238..1185698) Staphylococcus carnosus subsp. carnosus TM300 7550473 YP_002634265.1 CDS Sca_1172 NC_012121.1 1185715 1186257 R (Q9D110) 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) (510-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS),InterPro: 5-formyltetrahydrofolate cyclo-ligase; Hypothetical protein; 5-formyltetrahydrofolate cyclo-ligase complement(1185715..1186257) Staphylococcus carnosus subsp. carnosus TM300 7550474 YP_002634266.1 CDS pbpF NC_012121.1 1186435 1188480 R (P54488) Hypothetical protein yqgF,InterPro: Penicillin-binding protein transpeptidase domain,Homolog to penicillin-binding protein Pbp2b [Staphylococcus aureus]:,Score = 1046 bits (2704), Expect = 0.0,Identities = 515/678 (75%), Positives = 588/678 (85%); Hypothetical protein; penicillin-binding protein Pbp2b complement(1186435..1188480) Staphylococcus carnosus subsp. carnosus TM300 7550475 YP_002634267.1 CDS sod NC_012121.1 1188681 1189286 R superoxide dismutase complement(1188681..1189286) Staphylococcus carnosus subsp. carnosus TM300 7551909 YP_002634268.1 CDS fur NC_012121.1 1189486 1189893 R (P54204) Ferric uptake regulation protein (Ferric uptake regulator),InterPro: Ferric-uptake regulator; Hypothetical protein; putative ferric uptake regulator complement(1189486..1189893) Staphylococcus carnosus subsp. carnosus TM300 7552138 YP_002634269.1 CDS mreB NC_012121.1 1189895 1190743 R (Q56955) Chelated iron transport system membrane protein yfeD,InterPro: ABC transporter family 3; Hypothetical protein; putative ABC transporter permease MreB complement(1189895..1190743) Staphylococcus carnosus subsp. carnosus TM300 7551601 YP_002634270.1 CDS mreA NC_012121.1 1190743 1191513 R (Q9XDA6) Zinc uptake system ATP-binding protein zurA,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATPase MreA complement(1190743..1191513) Staphylococcus carnosus subsp. carnosus TM300 7551811 YP_002634271.1 CDS Sca_1178 NC_012121.1 1191629 1192519 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1191629..1192519) Staphylococcus carnosus subsp. carnosus TM300 7551810 YP_002634272.1 CDS Sca_1179 NC_012121.1 1192537 1193877 R (P44586) Cold-shock DEAD-box protein A homolog (ATP-dependent RNA helicase deaD homolog),InterPro: DEAD/DEAH box helicase; Hypothetical protein; putative helicase complement(1192537..1193877) Staphylococcus carnosus subsp. carnosus TM300 7550476 YP_002634273.1 CDS Sca_1180 NC_012121.1 1193901 1194995 R (Q99TT7) Hypothetical UPF0135 protein SAV1559/SA1388,InterPro: Protein of unknown function DUF34; Hypothetical protein; hypothetical protein complement(1193901..1194995) Staphylococcus carnosus subsp. carnosus TM300 7550477 YP_002634274.1 CDS Sca_1181 NC_012121.1 1194992 1195666 R COG2384 Predicted SAM-dependent methyltransferase,(P54471) Hypothetical protein yqfN; Hypothetical protein; hypothetical protein complement(1194992..1195666) Staphylococcus carnosus subsp. carnosus TM300 7550478 YP_002634275.1 CDS sigA NC_012121.1 1195815 1196924 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1195815..1196924) Staphylococcus carnosus subsp. carnosus TM300 7550479 YP_002634276.1 CDS dnaG NC_012121.1 1197016 1198794 R (O05338) DNA primase (EC 2.7.7.-),InterPro: DNA primase; Hypothetical protein; putative DNA primase DnaG complement(1197016..1198794) Staphylococcus carnosus subsp. carnosus TM300 7552129 YP_002634277.1 CDS Sca_1185 NC_012121.1 1198916 1199746 R (Q8CSD7) Hypothetical UPF0085 protein SE1250,InterPro: Protein of unknown function DUF299; Hypothetical protein; hypothetical protein complement(1198916..1199746) Staphylococcus carnosus subsp. carnosus TM300 7551533 YP_002634278.1 CDS Sca_1186 NC_012121.1 1199759 1200250 R (Q9LEV3) Protein At5g10860 mitochondrial precursor,InterPro: CBS domain,Similar to C-terminal part of CBS domain protein of Staphylococcus epidermidis (strain ATCC 35984 / RP62A) [TaxID:176279] (Q5HNY4),According to similarity, truncation of about 41 aa.; Hypothetical protein; CBS domain-containing protein complement(1199759..1200250) Staphylococcus carnosus subsp. carnosus TM300 7550480 YP_002634279.1 CDS glyS NC_012121.1 1200881 1202272 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1200881..1202272 Staphylococcus carnosus subsp. carnosus TM300 7550481 YP_002634280.1 CDS recO NC_012121.1 1202321 1203076 R (P42095) DNA repair protein recO (Recombination protein O),InterPro: Recombination protein O RecO; Hypothetical protein; putative recombination protein O complement(1202321..1203076) Staphylococcus carnosus subsp. carnosus TM300 7551654 YP_002634281.1 CDS era NC_012121.1 1203102 1204001 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1203102..1204001) Staphylococcus carnosus subsp. carnosus TM300 7552015 YP_002634282.1 CDS cdd NC_012121.1 1203998 1204405 R (Q9S3M0) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase) (CDA),InterPro: Cytidine deaminase homotetrameric; Hypothetical protein; putative cytidine deaminase complement(1203998..1204405) Staphylococcus carnosus subsp. carnosus TM300 7551549 YP_002634283.1 CDS dgk NC_012121.1 1204426 1204764 R (Q05888) Diacylglycerol kinase (EC 2.7.1.107) (DAGK) (Diglyceride kinase) (DGK),InterPro: Prokaryotic diacylglycerol kinase; Hypothetical protein; putative diacylglycerol kinase complement(1204426..1204764) Staphylococcus carnosus subsp. carnosus TM300 7551465 YP_002634284.1 CDS Sca_1192 NC_012121.1 1204768 1205229 R (Q99TS6) Hypothetical UPF0054 protein SAV1570/SA1399,InterPro: Protein of unknown function UPF0054; Hypothetical protein; hypothetical protein complement(1204768..1205229) Staphylococcus carnosus subsp. carnosus TM300 7551522 YP_002634285.1 CDS phoH NC_012121.1 1205235 1206182 R Hypothetical protein; PhoH-like protein complement(1205235..1206182) Staphylococcus carnosus subsp. carnosus TM300 7550482 YP_002634286.1 CDS Sca_1194 NC_012121.1 1206403 1207044 R Hypothetical protein; hypothetical protein complement(1206403..1207044) Staphylococcus carnosus subsp. carnosus TM300 7551939 YP_002634287.1 CDS Sca_1195 NC_012121.1 1207058 1208044 R (P54466) Hypothetical protein yqfA,Signal peptide prediction by SignalP 3.0 (cleavage between 33 and 34); Hypothetical protein; hypothetical protein complement(1207058..1208044) Staphylococcus carnosus subsp. carnosus TM300 7550483 YP_002634288.1 CDS Sca_1196 NC_012121.1 1208064 1208780 R (P54465) Hypothetical protein yqeZ; Hypothetical protein; hypothetical protein complement(1208064..1208780) Staphylococcus carnosus subsp. carnosus TM300 7550484 YP_002634289.1 CDS rpsU NC_012121.1 1208987 1209163 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1208987..1209163) Staphylococcus carnosus subsp. carnosus TM300 7550485 YP_002634290.1 CDS Sca_1198 NC_012121.1 1209294 1210640 R (P54462) Hypothetical UPF0004 protein yqeV,InterPro: Protein of unknown function UPF0004; Hypothetical protein; putative radical SAM family protein complement(1209294..1210640) Staphylococcus carnosus subsp. carnosus TM300 7552095 YP_002634291.1 CDS Sca_1199 NC_012121.1 1210646 1211398 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1210646..1211398) Staphylococcus carnosus subsp. carnosus TM300 7550486 YP_002634292.1 CDS prmA NC_012121.1 1211400 1212338 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1211400..1212338) Staphylococcus carnosus subsp. carnosus TM300 7550487 YP_002634293.1 CDS dnaJ NC_012121.1 1212345 1213478 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1212345..1213478) Staphylococcus carnosus subsp. carnosus TM300 7550488 YP_002634294.1 CDS dnaK NC_012121.1 1213657 1215480 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1213657..1215480) Staphylococcus carnosus subsp. carnosus TM300 7551535 YP_002634295.1 CDS grpE NC_012121.1 1215533 1216129 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1215533..1216129) Staphylococcus carnosus subsp. carnosus TM300 7551536 YP_002634296.1 CDS hrcA NC_012121.1 1216157 1217125 R (Q9F1W4) Heat-inducible transcription repressor hrcA,InterPro: Negative regulator of class I heat shock protein; Hypothetical protein; putative heat-inducible transcriptional repressor complement(1216157..1217125) Staphylococcus carnosus subsp. carnosus TM300 7551667 YP_002634297.1 CDS hemN NC_012121.1 1217230 1218351 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1217230..1218351) Staphylococcus carnosus subsp. carnosus TM300 7551704 YP_002634298.1 CDS lepA NC_012121.1 1218420 1220243 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1218420..1220243) Staphylococcus carnosus subsp. carnosus TM300 7551685 YP_002634299.1 CDS rpsT NC_012121.1 1220508 1220759 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1220508..1220759 Staphylococcus carnosus subsp. carnosus TM300 7551741 YP_002634300.1 CDS holA NC_012121.1 1220792 1221766 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1220792..1221766) Staphylococcus carnosus subsp. carnosus TM300 7552094 YP_002634301.1 CDS Sca_1209 NC_012121.1 1221840 1222178 R (P44408) Recombination protein,Similar to C-terminal part of protein similar to similar to late competence protein ComEC [Staphylococcus aureus subsp. aureus Mu50] (BAB57750); Hypothetical protein; hypothetical protein complement(1221840..1222178) Staphylococcus carnosus subsp. carnosus TM300 7550489 YP_002634302.1 CDS Sca_1210 NC_012121.1 1222193 1224076 R (P39695) ComE operon protein,InterPro: ComEC/Rec2-related protein,Similar to N-terminal part of protein similar to ComEC late competence protein 3 of Staphylococcus haemolyticus (strain JCSC1435) [TaxID:279808] (Q4L6T9); Hypothetical protein; hypothetical protein complement(1222193..1224076) Staphylococcus carnosus subsp. carnosus TM300 7550490 YP_002634303.1 CDS Sca_1211 NC_012121.1 1224084 1224545 R (P32393) ComE operon protein,InterPro: Cytidine/deoxycytidylate deaminase zinc-binding region; Hypothetical protein; putative deaminase complement(1224084..1224545) Staphylococcus carnosus subsp. carnosus TM300 7550491 YP_002634304.1 CDS Sca_1212 NC_012121.1 1224620 1225288 R (P39694) ComE operon protein,InterPro: Competence protein ComEA helix-hairpin-helix region; Hypothetical protein; hypothetical protein complement(1224620..1225288) Staphylococcus carnosus subsp. carnosus TM300 7550492 YP_002634305.1 CDS Sca_1213 NC_012121.1 1225337 1226053 R (P54458) Hypothetical protein yqeM,InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; hypothetical protein complement(1225337..1226053) Staphylococcus carnosus subsp. carnosus TM300 7550493 YP_002634306.1 CDS Sca_1214 NC_012121.1 1226056 1226406 R (P05848) Hypothetical protein ybeB,InterPro: Iojap-related protein; Hypothetical protein; hypothetical protein complement(1226056..1226406) Staphylococcus carnosus subsp. carnosus TM300 7550494 YP_002634307.1 CDS Sca_1215 NC_012121.1 1226407 1226991 R (P54456) Hypothetical protein yqeK,InterPro: Conserved hypothetical protein 488; Hypothetical protein; putative metal dependent phosphohydrolase complement(1226407..1226991) Staphylococcus carnosus subsp. carnosus TM300 7550495 YP_002634308.1 CDS nad NC_012121.1 1226981 1227604 R (Q8CSC1) Probable nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase),InterPro: Probable nicotinate-nucleotide adenylyltransferase; Hypothetical protein; putative nicotinate-nucleotide adenylyltransferase complement(1226981..1227604) Staphylococcus carnosus subsp. carnosus TM300 7550496 YP_002634309.1 CDS Sca_1217 NC_012121.1 1227555 1227845 R (P54454) Hypothetical UPF0044 protein yqeI,InterPro: Protein of unknown function UPF0044,Crystal structure of E. coli YhbY has been determined. A role in translation is postulated.; Hypothetical protein; hypothetical protein complement(1227555..1227845) Staphylococcus carnosus subsp. carnosus TM300 7551837 YP_002634310.1 CDS aroE NC_012121.1 1227846 1228655 R (Q8CP09) Shikimate 5-dehydrogenase (EC 1.1.1.25),InterPro: Shikimate 5-dehydrogenase,Similar to AroE of E. coli:,Score = 126 bits (316), Expect = 7e-29,Identities = 94/275 (34%), Positives = 142/275 (51%),Gaps = 22/275 (8%); Hypothetical protein; putative shikimate 5-dehydrogenease complement(1227846..1228655) Staphylococcus carnosus subsp. carnosus TM300 7550497 YP_002634311.1 CDS Sca_1219 NC_012121.1 1228665 1229765 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1228665..1229765) Staphylococcus carnosus subsp. carnosus TM300 7551422 YP_002634312.1 CDS Sca_1220 NC_012121.1 1229766 1230293 R (P54452) Hypothetical protein yqeG,InterPro: HAD-superfamily hydrolase subfamily IIIA; Hypothetical protein; hypothetical protein complement(1229766..1230293) Staphylococcus carnosus subsp. carnosus TM300 7550498 YP_002634313.1 CDS mtn NC_012121.1 1230313 1230999 R (P45113) MTA/SAH nucleosidase (5-methylthioadenosine nucleosidase) (EC 3.2.2.16) (S-adenosylhomocysteine nucleosidase) (EC 3.2.2.9),InterPro: Purine and other phosphorylases family 1,Similar to MtnN of B. subtilis:,>MTNN_BACSU,Length = 231,Score = 207 bits (526), Expect = 4e-73,Identities = 109/228 (47%),Positives = 165/228 (72%), Gaps = 1/228 (0%); Hypothetical protein; putative 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase complement(1230313..1230999) Staphylococcus carnosus subsp. carnosus TM300 7550499 YP_002634314.1 CDS greA NC_012121.1 1231249 1231731 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1231249..1231731) Staphylococcus carnosus subsp. carnosus TM300 7551817 YP_002634315.1 CDS udk NC_012121.1 1231757 1232383 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1231757..1232383) Staphylococcus carnosus subsp. carnosus TM300 7551664 YP_002634316.1 CDS Sca_1224 NC_012121.1 1232557 1233654 R (P44700) Putative protease HI0419 (EC 3.4.-.-),InterPro: Peptidase U32,Similar to N-terminal part of putative peptidase [Staphylococcus aureus subsp. aureus MSSA476] (CAG43349),Due to sequence similarity, about 57 aa are missing at the C-terminus.; Hypothetical protein; hypothetical protein complement(1232557..1233654) Staphylococcus carnosus subsp. carnosus TM300 7552277 YP_002634317.1 CDS Sca_1225 NC_012121.1 1233668 1234597 R (P44700) Putative protease HI0419 (EC 3.4.-.-),InterPro: Peptidase U32; Hypothetical protein; putative peptidase complement(1233668..1234597) Staphylococcus carnosus subsp. carnosus TM300 7550500 YP_002634318.1 CDS Sca_1226 NC_012121.1 1234594 1235235 R (Q00719) O-methyltransferase (EC 2.1.1.-),InterPro: O-methyltransferase family 3; Hypothetical protein; putative O-methyltransferase complement(1234594..1235235) Staphylococcus carnosus subsp. carnosus TM300 7550501 YP_002634319.1 CDS Sca_1227 NC_012121.1 1235528 1235839 R (O43309) Zinc finger protein; Hypothetical protein; hypothetical protein complement(1235528..1235839) Staphylococcus carnosus subsp. carnosus TM300 7550502 YP_002634320.1 CDS Sca_1228 NC_012121.1 1235862 1236290 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1235862..1236290) Staphylococcus carnosus subsp. carnosus TM300 7550503 YP_002634321.1 CDS Sca_1229 NC_012121.1 1236293 1236556 R (Q7WY61) Hypothetical UPF0297 protein yrzL; Hypothetical protein; hypothetical protein complement(1236293..1236556) Staphylococcus carnosus subsp. carnosus TM300 7550504 YP_002634322.1 CDS alaS NC_012121.1 1236625 1239255 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1236625..1239255) Staphylococcus carnosus subsp. carnosus TM300 7550505 YP_002634323.1 CDS Sca_1231 NC_012121.1 1239562 1241982 R (Q58914) Hypothetical protein MJ1519,InterPro: Helicase RecD/TraA; Hypothetical protein; hypothetical protein complement(1239562..1241982) Staphylococcus carnosus subsp. carnosus TM300 7551382 YP_002634324.1 CDS Sca_1232 NC_012121.1 1241986 1242657 R InterPro: TPR repeat; Hypothetical protein; hypothetical protein complement(1241986..1242657) Staphylococcus carnosus subsp. carnosus TM300 7550506 YP_002634325.1 CDS mnmA NC_012121.1 1242765 1243877 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1242765..1243877) Staphylococcus carnosus subsp. carnosus TM300 7550507 YP_002634326.1 CDS iscS NC_012121.1 1243880 1245019 R (Q8ZN40) Cysteine desulfurase (EC 2.8.1.7) (ThiI transpersulfidase) (NifS protein homolog),InterPro: Aminotransferase class V,Similar to E. coli IscS:,>ISCS_ECOLI,Length = 404,Score = 293 bits (749),Expect = 1e-165,Identities = 167/383 (43%), Positives = 232/383 (60%), Gaps = 8/383 (2%); Hypothetical protein; putative cysteine desulfurase complement(1243880..1245019) Staphylococcus carnosus subsp. carnosus TM300 7550508 YP_002634327.1 CDS Sca_1235 NC_012121.1 1245201 1246199 D (P45529) Hypothetical protein yhbW,InterPro: Bacterial luciferase; Hypothetical protein; putative luciferase-like monooxygenase 1245201..1246199 Staphylococcus carnosus subsp. carnosus TM300 7551724 YP_002634328.1 CDS Sca_1236 NC_012121.1 1246240 1246446 R InterPro: CsbD-like; Hypothetical protein; hypothetical protein complement(1246240..1246446) Staphylococcus carnosus subsp. carnosus TM300 7550509 YP_002634329.1 CDS Sca_1237 NC_012121.1 1246515 1246685 R Hypothetical protein; hypothetical protein complement(1246515..1246685) Staphylococcus carnosus subsp. carnosus TM300 7550510 YP_002634330.1 CDS Sca_1238 NC_012121.1 1246844 1247263 R (O69219) Hypothetical UPF0074 protein (ORF2),InterPro: Protein of unknown function UPF0074; Hypothetical protein; hypothetical protein complement(1246844..1247263) Staphylococcus carnosus subsp. carnosus TM300 7550511 YP_002634331.1 CDS Sca_1239 NC_012121.1 1247350 1248630 D (P45262) Hypothetical protein HI1590,InterPro: AAA ATPase central region; Hypothetical protein; recombination factor protein RarA 1247350..1248630 Staphylococcus carnosus subsp. carnosus TM300 7550512 YP_002634332.1 CDS Sca_1240 NC_012121.1 1248700 1249479 R (O13861) Hypothetical protein C1A6.10 in chromosome I,InterPro: UBA/THIF-type NAD/FAD binding fold; Hypothetical protein; hypothetical protein complement(1248700..1249479) Staphylococcus carnosus subsp. carnosus TM300 7550513 YP_002634333.1 CDS aspS NC_012121.1 1249863 1251629 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1249863..1251629) Staphylococcus carnosus subsp. carnosus TM300 7550514 YP_002634334.1 CDS hisS NC_012121.1 1251633 1252919 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1251633..1252919) Staphylococcus carnosus subsp. carnosus TM300 7551428 YP_002634335.1 CDS Sca_1243 NC_012121.1 1253249 1254124 R orf in full length conserved in staphylococci,local similarity to N-acetylmuramoyl-L-alanine amidase cwlB [Precursor],(EC 3.5.1.28), lytC, Bacillus subtilis, 496AA,201AA aligned, Expect = 2e-15, Identities = 59/198 (29%),Positives = 94/198 (47%), Gaps = 16/198 (8%),(Q02114) N-acetylmuramoyl-L-alanine amidase cwlB precursor (EC 3.5.1.28) (Cell wall hydrolase) (Autolysin),InterPro: Cell wall hydrolase/autolysin; Hypothetical protein; hypothetical protein complement(1253249..1254124) Staphylococcus carnosus subsp. carnosus TM300 7551697 YP_002634336.1 CDS Sca_1244 NC_012121.1 1254121 1254573 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1254121..1254573) Staphylococcus carnosus subsp. carnosus TM300 7550515 YP_002634337.1 CDS relA NC_012121.1 1254589 1256778 R orf in full length conserved in staphylococci,,similar to GTP pyrophosphokinase relA (EC 2.7.6.5), Corynebacterium glutamicum (Brevibacterium flavum), 760AA, Expect = 1e-166, Identities = 287/726 (39%), Positives = 464/726 (63%), Gaps = 14/726 (1%),(O32419) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP 3-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase),InterPro: RelA/SpoT protein; Hypothetical protein; GTP pyrophosphokinase complement(1254589..1256778) Staphylococcus carnosus subsp. carnosus TM300 7550516 YP_002634338.1 CDS apt NC_012121.1 1257152 1257670 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1257152..1257670) Staphylococcus carnosus subsp. carnosus TM300 7552019 YP_002634339.1 CDS Sca_1247 NC_012121.1 1257690 1259966 R orf in full length conserved in staphylococci,N-terminal region is similar to single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-), Escherichia coli, 577AA,Expect = 0.0, Identities = 186/582 (31%), Positives = 301/582 (51%), Gaps = 40/582 (6%),(P21893) Single-stranded-DNA-specific exonuclease recJ (EC 3.1.-.-),InterPro: Bacterial RecJ exonuclease; Hypothetical protein; putative single-strand DNA-specific exonuclease complement(1257690..1259966) Staphylococcus carnosus subsp. carnosus TM300 7551402 YP_002634340.1 CDS secDF NC_012121.1 1260101 1262377 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(1260101..1262377) Staphylococcus carnosus subsp. carnosus TM300 7550517 YP_002634341.1 CDS Sca_1249 NC_012121.1 1262830 1263090 R (Q9KDI4) Hypothetical UPF0092 protein BH1229,InterPro: YajC; Hypothetical protein; hypothetical protein complement(1262830..1263090) Staphylococcus carnosus subsp. carnosus TM300 7552121 YP_002634342.1 CDS tgt NC_012121.1 1263104 1264246 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1263104..1264246) Staphylococcus carnosus subsp. carnosus TM300 7550518 YP_002634343.1 CDS queA NC_012121.1 1264262 1265287 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1264262..1265287) Staphylococcus carnosus subsp. carnosus TM300 7552173 YP_002634344.1 CDS ruvB NC_012121.1 1265277 1266293 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1265277..1266293) Staphylococcus carnosus subsp. carnosus TM300 7552005 YP_002634345.1 CDS ruvA NC_012121.1 1266318 1266923 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1266318..1266923) Staphylococcus carnosus subsp. carnosus TM300 7552100 YP_002634346.1 CDS Sca_1254 NC_012121.1 1266936 1267391 R similar to Bacillus subtilis possible chorismate mutase,(Q8CNZ8) ACT domain protein pheB,InterPro: Predicted ligand-binding protein with an ACT domain; Hypothetical protein; hypothetical protein complement(1266936..1267391) Staphylococcus carnosus subsp. carnosus TM300 7552099 YP_002634347.1 CDS obgE NC_012121.1 1267402 1268694 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1267402..1268694) Staphylococcus carnosus subsp. carnosus TM300 7550519 YP_002634348.1 CDS rpmA NC_012121.1 1268826 1269110 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1268826..1269110) Staphylococcus carnosus subsp. carnosus TM300 7551876 YP_002634349.1 CDS Sca_1257 NC_012121.1 1269122 1269442 R (P26942) Hypothetical protein ysxB,InterPro: Protein of unknown function DUF464; Hypothetical protein; hypothetical protein complement(1269122..1269442) Staphylococcus carnosus subsp. carnosus TM300 7552062 YP_002634350.1 CDS rplU NC_012121.1 1269445 1269753 R Hypothetical protein; 50S ribosomal protein L21 complement(1269445..1269753) Staphylococcus carnosus subsp. carnosus TM300 7550520 YP_002634351.1 CDS Sca_1259 NC_012121.1 1269877 1270398 R orf conserved in staphylococci,,similar to Rod shape-determining protein mreD/rodB,Bacillus subtilis,172AA, Expect = 3e-41, Identities = 40/165 (24%),Positives = 72/165 (43%),(Q01467) Rod shape-determining protein mreD,InterPro: Rod shape-determining protein MreD; Hypothetical protein; hypothetical protein complement(1269877..1270398) Staphylococcus carnosus subsp. carnosus TM300 7550521 YP_002634352.1 CDS Sca_1260 NC_012121.1 1270398 1271246 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1270398..1271246) Staphylococcus carnosus subsp. carnosus TM300 7550522 YP_002634353.1 CDS Sca_1261 NC_012121.1 1271455 1271595 R Hypothetical protein; hypothetical protein complement(1271455..1271595) Staphylococcus carnosus subsp. carnosus TM300 7550523 YP_002634354.1 CDS Sca_1262 NC_012121.1 1271686 1272150 R conserved in staphylococci; Hypothetical protein; hypothetical protein complement(1271686..1272150) Staphylococcus carnosus subsp. carnosus TM300 7550524 YP_002634355.1 CDS Sca_1263 NC_012121.1 1272299 1272469 D Hypothetical protein; hypothetical protein 1272299..1272469 Staphylococcus carnosus subsp. carnosus TM300 7550525 YP_002634356.1 CDS radC NC_012121.1 1272525 1273205 R similar to DNA repair protein radC, Escherichia coli, 222AA, Expect = 1e-33, Identities = 78/212 (36%),Positives = 124/212 (58%), (Q8NW77) DNA repair protein radC homolog,InterPro: DNA repair protein RadC; Hypothetical protein; putative DNA repair protein RadC complement(1272525..1273205) Staphylococcus carnosus subsp. carnosus TM300 7550526 YP_002634357.1 CDS Sca_1265 NC_012121.1 1273218 1273940 R no Shine Dalgarno sequence, no complete alignments,(Q56740) Type 4 prepilin-like proteins leader peptide processing enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)],InterPro: Prepilin cysteine protease (C20) type IV; Hypothetical protein; hypothetical protein complement(1273218..1273940) Staphylococcus carnosus subsp. carnosus TM300 7552007 YP_002634358.1 CDS folC'' NC_012121.1 1274134 1274553 R similar to C-terminus of folylpolyglutamate synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_301192),(Q05865) Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS),InterPro: Cytoplasmic peptidoglycan synthetases C-terminal; Hypothetical protein; hypothetical protein complement(1274134..1274553) Staphylococcus carnosus subsp. carnosus TM300 7550527 YP_002634359.1 CDS folC' NC_012121.1 1274585 1275403 R similar to N terminus folylpolyglutamate synthase folC (EC 6.3.2.17),Bacillus subtilis, 430AA, Expect = 2e-65, Identities = 129/257 (50%), Positives = 172/257 (66%),Gaps = 6/257 (2%) ,(Q05865) Folylpolyglutamate synthase (EC 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS),InterPro: Folylpolyglutamate synthetase,Similar to N-terminal part of folylpolyglutamate synthase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_301192); Hypothetical protein; hypothetical protein complement(1274585..1275403) Staphylococcus carnosus subsp. carnosus TM300 7551587 YP_002634360.1 CDS valS NC_012121.1 1275415 1278045 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1275415..1278045) Staphylococcus carnosus subsp. carnosus TM300 7551586 YP_002634361.1 CDS tag NC_012121.1 1278356 1278916 D similar to DNA-3-methyladenine glycosylase I, tag,(EC 3.2.2.20), Escherichia coli, 187AA, Expect = 3e-97,Identities = 79/183 (43%), Positives = 118/183 (64%) ,(P05100) DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I constitutive) (TAG I) (DNA-3-methyladenine glycosidase I),InterPro: Methyladenine glycosylase; Hypothetical protein; putative DNA-3-methyladenine glycosidase 1278356..1278916 Staphylococcus carnosus subsp. carnosus TM300 7552293 YP_002634362.1 CDS pcp NC_012121.1 1278954 1279595 D similar to pyrrolidone-carboxylate peptidase pcp (EC 3.4.19.3),Bacillus amyloliquefaciens, 215AA, Expect = 2e-47, Identities = 101/215 (46%), Positives = 139/215 (64%), Gaps = 6/215 (2%),(Q8XKH1) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase),InterPro: Pyrrolidone-carboxylate/pyroglutamyl peptidase I (C15); Hypothetical protein; putative pyrrolidone-carboxylate peptidase 1278954..1279595 Staphylococcus carnosus subsp. carnosus TM300 7552156 YP_002634363.1 CDS Sca_1272 NC_012121.1 1279637 1280713 R (P75747) AbrB protein (AidB regulator),InterPro: Putative ammonia monooxygenase; Hypothetical protein; hypothetical protein complement(1279637..1280713) Staphylococcus carnosus subsp. carnosus TM300 7551912 YP_002634364.1 CDS hemL NC_012121.1 1280861 1282150 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1280861..1282150) Staphylococcus carnosus subsp. carnosus TM300 7550528 YP_002634365.1 CDS hemB NC_012121.1 1282152 1283135 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1282152..1283135) Staphylococcus carnosus subsp. carnosus TM300 7551684 YP_002634366.1 CDS hemD NC_012121.1 1283132 1283821 R conserved in staphylococci,similar to uroporphyrinogen III cosynthase Bacillus subtilis subsp. subtilis, 262AA, 190AA aligned, Expect = 6e-09, Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 12/190,similar to C terminal porphyrin biosynthesis protein hemD, Clostridium josui, 504AA, Expect = 3e-12,Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 25/223 (11%) ,(Q59294) Porphyrin biosynthesis protein HEMD [Includes: Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM); Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS) (Uroporphyrin,InterPro: Uroporphyrinogen III synthase HEM4; Hypothetical protein; putative uroporphyrinogen III synthase complement(1283132..1283821) Staphylococcus carnosus subsp. carnosus TM300 7551679 YP_002634367.1 CDS hemC NC_012121.1 1283848 1284774 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1283848..1284774) Staphylococcus carnosus subsp. carnosus TM300 7551681 YP_002634368.1 CDS hemX NC_012121.1 1284806 1285630 R similar to Protein hemX, Bacillus subtilis, 276AA,Expect = 4e-71,Identities = 88/272 (32%), Positives = 152/272 (55%), (P16645) Protein hemX,InterPro: Cytochrome c assembly protein; Hypothetical protein; hemA concentration negative effector complement(1284806..1285630) Staphylococcus carnosus subsp. carnosus TM300 7551680 YP_002634369.1 CDS hemA NC_012121.1 1285653 1286990 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1285653..1286990) Staphylococcus carnosus subsp. carnosus TM300 7551686 YP_002634370.1 CDS engB NC_012121.1 1287272 1287859 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1287272..1287859) Staphylococcus carnosus subsp. carnosus TM300 7551678 YP_002634371.1 CDS clpX NC_012121.1 1288010 1289272 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1288010..1289272) Staphylococcus carnosus subsp. carnosus TM300 7550529 YP_002634372.1 CDS tig NC_012121.1 1289643 1290965 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1289643..1290965) Staphylococcus carnosus subsp. carnosus TM300 7551476 YP_002634373.1 CDS Sca_1282 NC_012121.1 1291130 1292068 R (Q9HGN1) Probable serine/threonine-protein kinase C36B7.09 (EC 2.7.11.1); Hypothetical protein; hypothetical protein complement(1291130..1292068) Staphylococcus carnosus subsp. carnosus TM300 7552189 YP_002634374.1 CDS Sca_1283 NC_012121.1 1292084 1292695 R (P50619) Hypothetical protein ymaB,InterPro: NUDIX hydrolase; Hypothetical protein; hypothetical protein complement(1292084..1292695) Staphylococcus carnosus subsp. carnosus TM300 7550530 YP_002634375.1 CDS rplT NC_012121.1 1292843 1293199 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1292843..1293199) Staphylococcus carnosus subsp. carnosus TM300 7550531 YP_002634376.1 CDS rpmI NC_012121.1 1293307 1293507 R similar to 50S ribosomal protein L35 rpmI, Bacillus stearothermophilus, ,(Q99TI2) 50S ribosomal protein L35,InterPro: Ribosomal protein L35; Hypothetical protein; 50S ribosomal protein L35 complement(1293307..1293507) Staphylococcus carnosus subsp. carnosus TM300 7552057 YP_002634377.1 CDS infC NC_012121.1 1293538 1294065 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1293538..1294065) Staphylococcus carnosus subsp. carnosus TM300 7552070 YP_002634378.1 CDS lysP NC_012121.1 1294286 1295773 R similar to lysine-specific permease lysP,Escherichia coli, 488AA, Expect = 1e-133, Identities = 262/491 (53%), Positives = 346/491 (70%), Gaps = 17/491 (3%),(P48813) High-affinity glutamine permease,InterPro: Amino acid permease-associated region; Hypothetical protein; lysine-specific permease complement(1294286..1295773) Staphylococcus carnosus subsp. carnosus TM300 7551722 YP_002634379.1 CDS Sca_1288 NC_012121.1 1295802 1295894 D Hypothetical protein; hypothetical protein 1295802..1295894 Staphylococcus carnosus subsp. carnosus TM300 7551762 YP_002634380.1 CDS thrS NC_012121.1 1296101 1298044 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1296101..1298044) Staphylococcus carnosus subsp. carnosus TM300 7550532 YP_002634381.1 CDS dnaI NC_012121.1 1298367 1299290 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1298367..1299290) Staphylococcus carnosus subsp. carnosus TM300 7552187 YP_002634382.1 CDS dnaB NC_012121.1 1299287 1300708 R similar to replication initiation and membrane attachment protein dnaB, Bacillus subtilis, 472AA, Expect = 1e-157, Identities = 139/485 (28%), Positives = 238/485 (49%), Gaps = 58/485 (11%),(P07908) Replication initiation and membrane attachment protein; Hypothetical protein; chromosome replication initiation/membrane attachment protein complement(1299287..1300708) Staphylococcus carnosus subsp. carnosus TM300 7551534 YP_002634383.1 CDS nrdR NC_012121.1 1300711 1301184 R (Q8CS73) Hypothetical UPF0168 protein SE1360,InterPro: Protein of unknown function DUF193; Hypothetical protein; transcriptional regulator NrdR complement(1300711..1301184) Staphylococcus carnosus subsp. carnosus TM300 7551529 YP_002634384.1 CDS gapB NC_012121.1 1301338 1302360 R (Q99TH5) Glyceraldehyde 3-phosphate dehydrogenase 2 (EC 1.2.1.12) (GAPDH 2),InterPro: Glyceraldehyde 3-phosphate dehydrogenase; Hypothetical protein; glyceraldehyde 3-phosphate dehydrogenase 2 complement(1301338..1302360) Staphylococcus carnosus subsp. carnosus TM300 7550533 YP_002634385.1 CDS coaE NC_012121.1 1302517 1303143 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1302517..1303143) Staphylococcus carnosus subsp. carnosus TM300 7551610 YP_002634386.1 CDS mutM NC_012121.1 1303161 1304033 R similar to formamidopyrimidine-DNA glycosylase mutM, (EC 4.2.99.18), Escherichia coli, 876AA, Expect = 0.0, Identities = 471/877 (53%), Positives = 619/877 (70%), Gaps = 7/877 (0%),(P05523) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) (FAPY-DNA glycosylase),InterPro: Formamidopyrimidine-DNA glycolase; Hypothetical protein; formamidopyrimidine-DNA glycosylase complement(1303161..1304033) Staphylococcus carnosus subsp. carnosus TM300 7551480 YP_002634387.1 CDS polA NC_012121.1 1304049 1306679 R similar to DNA polymerase I polA, (EC 2.7.7.7),Bacillus stearothermophilus, 876AA, Expect = 0.0,Identities = 471/877 (53%), Positives = 619/877 (70%),Gaps = 7/877 (0%),(O34996) DNA polymerase I (EC 2.7.7.7) (POL I),InterPro: DNA polymerase family A; Hypothetical protein; DNA polymerase I complement(1304049..1306679) Staphylococcus carnosus subsp. carnosus TM300 7551828 YP_002634388.1 CDS phoR NC_012121.1 1306775 1308484 R similar to alkaline phosphatase synthesis sensor protein phoR, (EC 2.7.3.-), Bacillus subtilis, 579AA,Expect = 1e-72, Identities = 188/571 (32%), Positives = 305/571 (53%), Gaps = 17/571 (2%),(P23545) Alkaline phosphatase synthesis sensor protein phoR (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; putative alkaline phosphatase synthesis sensor protein complement(1306775..1308484) Staphylococcus carnosus subsp. carnosus TM300 7551946 YP_002634389.1 CDS phoP NC_012121.1 1308481 1309197 R similar to alkaline phosphatase synthesis transcriptional regulatory protein phoP, Bacillus subtilis, 240AA, Expect = 2e-75, Identities = 161/237 (67%), Positives = 194/237 (81%), Gaps = 2/237 (0%),(P13792) Alkaline phosphatase synthesis transcriptional regulatory protein phoP,InterPro: Response regulator receiver; Hypothetical protein; alkaline phosphatase synthesis transcriptional regulatory protein complement(1308481..1309197) Staphylococcus carnosus subsp. carnosus TM300 7551941 YP_002634390.1 CDS icd NC_012121.1 1309377 1310642 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1309377..1310642) Staphylococcus carnosus subsp. carnosus TM300 7551940 YP_002634391.1 CDS citZ NC_012121.1 1310706 1311824 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1310706..1311824) Staphylococcus carnosus subsp. carnosus TM300 7551712 YP_002634392.1 CDS cycA NC_012121.1 1312180 1313550 D similar to D-serine/D-alanine/glycine transporter cycA, Escherichia coli, 470AA, Expect = 1e-127, Identities = 231/441 (52%), Positives = 327/441 (74%), Gaps = 2/441 (0%),InterPro: Amino acid permease-associated region; Hypothetical protein; D-serine/D-alanine/glycine transporter 1312180..1313550 Staphylococcus carnosus subsp. carnosus TM300 7551471 YP_002634393.1 CDS pykA NC_012121.1 1313884 1315644 R similar to Pyruvate kinase pyk, (EC 2.7.1.40),Bacillus stearothermophilus, 587AA, Expect = 0.0,Identities = 357/585 (61%), Positives = 448/585 (76%),(P51182) Pyruvate kinase (EC 2.7.1.40) (PK),InterPro: Pyruvate kinase; Hypothetical protein; pyruvate kinase complement(1313884..1315644) Staphylococcus carnosus subsp. carnosus TM300 7551495 YP_002634394.1 CDS pfk NC_012121.1 1315676 1316644 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1315676..1316644) Staphylococcus carnosus subsp. carnosus TM300 7551988 YP_002634395.1 CDS accA NC_012121.1 1316962 1317909 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1316962..1317909) Staphylococcus carnosus subsp. carnosus TM300 7551929 YP_002634396.1 CDS accD NC_012121.1 1317902 1318774 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1317902..1318774) Staphylococcus carnosus subsp. carnosus TM300 7551358 YP_002634397.1 CDS Sca_1307 NC_012121.1 1318846 1320072 R similar to NAD-dependent malic enzyme (EC 1.1.1.38), Bacillus stearothermophilus, 478AA, Expect = 1e-116, Identities = 227/395 (57%), Positives = 277/395 (70%), Gaps = 4/395 (1%) ,(O34962) Probable NAD-dependent malic enzyme 4 (EC 1.1.1.38) (NAD-ME 4),InterPro: Malic oxidoreductase; Hypothetical protein; malate dehydrogenase complement(1318846..1320072) Staphylococcus carnosus subsp. carnosus TM300 7551361 YP_002634398.1 CDS dnaE NC_012121.1 1320328 1323531 R (Q8CNX0) DNA polymerase III alpha subunit (EC 2.7.7.7),InterPro: DNA polymerase III alpha subunit; Hypothetical protein; DNA polymerase III subunit alpha complement(1320328..1323531) Staphylococcus carnosus subsp. carnosus TM300 7550535 YP_002634399.1 CDS Sca_1309 NC_012121.1 1323557 1324498 R (Q49428) Hypothetical protein MG371,InterPro: Phosphoesterase RecJ-like; Hypothetical protein; hypothetical protein complement(1323557..1324498) Staphylococcus carnosus subsp. carnosus TM300 7551532 YP_002634400.1 CDS Sca_1310 NC_012121.1 1324522 1325817 R (O58045) Inosine-5-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD),InterPro: CBS domain; Hypothetical protein; hypothetical protein complement(1324522..1325817) Staphylococcus carnosus subsp. carnosus TM300 7550536 YP_002634401.1 CDS Sca_1311 NC_012121.1 1326036 1326449 D (P42297) Hypothetical protein yxiE precursor,InterPro: Usp domain; Hypothetical protein; hypothetical protein 1326036..1326449 Staphylococcus carnosus subsp. carnosus TM300 7550537 YP_002634402.1 CDS Sca_1312 NC_012121.1 1326502 1327194 R catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase complement(1326502..1327194) Staphylococcus carnosus subsp. carnosus TM300 7550538 YP_002634403.1 CDS Sca_1313 NC_012121.1 1327335 1328390 D similar to Xaa-Pro dipeptidase pepQ, EC 3.4.13.9,Lactobacillus delbrueckii (subsp. lactis), 368AA, Expect = 3e-72, Identities = 146/356 (41%), Positives = 210/356 (58%), Gaps = 8/356 (2%),(P46545) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase),InterPro: Metallopeptidase M24; Hypothetical protein; putative Xaa-Pro dipeptidase 1327335..1328390 Staphylococcus carnosus subsp. carnosus TM300 7550539 YP_002634404.1 CDS ald NC_012121.1 1328559 1329674 R similar to alanine dehydrogenase ald (EC 1.4.1.1),Bacillus stearothermophilus, 372AA, Expect = 1e-159,Identities = 243/371 (65%), Positives = 288/371 (77%),Gaps = 2/371 (0%),(Q8NW54) Alanine dehydrogenase 2 (EC 1.4.1.1),InterPro: Alanine dehydrogenase and pyridine nucleotide transhydrogenase; Hypothetical protein; alanine dehydrogenase complement(1328559..1329674) Staphylococcus carnosus subsp. carnosus TM300 7550540 YP_002634405.1 CDS Sca_1315 NC_012121.1 1329883 1330386 D (Q57951) Hypothetical protein MJ0531,InterPro: Usp domain; Hypothetical protein; hypothetical protein 1329883..1330386 Staphylococcus carnosus subsp. carnosus TM300 7551383 YP_002634406.1 CDS ackA NC_012121.1 1330561 1331757 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1330561..1331757) Staphylococcus carnosus subsp. carnosus TM300 7550541 YP_002634407.1 CDS Sca_1317 NC_012121.1 1331840 1332787 R (P37876) Hypothetical protein ytxK; Hypothetical protein; hypothetical protein complement(1331840..1332787) Staphylococcus carnosus subsp. carnosus TM300 7551362 YP_002634408.1 CDS Sca_1318 NC_012121.1 1332895 1333395 R similar to thiol peroxidase tpx, (EC 1.11.1.-),Escherichia coli,,167AA, Expect = 3e-32, Identities = 73/165 (44%), Positives = 108/165 (65%), Gaps = 7/165 (4%),(Q99TF0) Probable thiol peroxidase (EC 1.11.1.-),InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Hypothetical protein; putative thioredoxin peroxidase complement(1332895..1333395) Staphylococcus carnosus subsp. carnosus TM300 7550542 YP_002634409.1 CDS Sca_1319 NC_012121.1 1333614 1334387 R (P46490) Hypothetical protein HI0198,InterPro: Protein of unknown function DUF81; Hypothetical protein; hypothetical protein complement(1333614..1334387) Staphylococcus carnosus subsp. carnosus TM300 7550543 YP_002634410.1 CDS thiI'' NC_012121.1 1334421 1335152 R (Q8NW49) Probable thiamine biosynthesis protein thiI,InterPro: Thiamine biosynthesis protein,Similar to C-terminus of thiamine biosynthesis protein ThiI [Staphylococcus epidermidis RP62A] (YP_188851); Hypothetical protein; hypothetical protein complement(1334421..1335152) Staphylococcus carnosus subsp. carnosus TM300 7550544 YP_002634411.1 CDS thiI' NC_012121.1 1335176 1335649 R (Q8CNW7) Probable thiamine biosynthesis protein thiI,Similar to N-terminus of putative thiamine biosynthesis ATP pyrophosphatase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_301138); Hypothetical protein; hypothetical protein complement(1335176..1335649) Staphylococcus carnosus subsp. carnosus TM300 7552181 YP_002634412.1 CDS Sca_1322 NC_012121.1 1335646 1336785 R similar to Cysteine desulfurase iscS (EC 2.8.1.7),Escherichia coli, 404AA, Expect = 3e-53, Identities = 141/366 (38%), Positives = 211/366 (57%), Gaps = 12/366 (3%),(P31672) NifS/icsS protein homolog (Fragment),InterPro: Aminotransferase class V; Hypothetical protein; hypothetical protein complement(1335646..1336785) Staphylococcus carnosus subsp. carnosus TM300 7552180 YP_002634413.1 CDS Sca_1323 NC_012121.1 1336925 1338625 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1336925..1338625) Staphylococcus carnosus subsp. carnosus TM300 7550545 YP_002634414.1 CDS Sca_1324 NC_012121.1 1338808 1339182 D (P76270) UPF0067 protein yebR,Similar to N-terminus of GAF domain protein [Staphylococcus epidermidis RP62A] (YP_188854); Hypothetical protein; GAF-domain-containing protein (fragment 1) 1338808..1339182 Staphylococcus carnosus subsp. carnosus TM300 7550546 YP_002634415.1 CDS Sca_1325 NC_012121.1 1339142 1339279 D (P76270) UPF0067 protein yebR,Similar to C-terminus of GAF domain protein [Staphylococcus epidermidis RP62A] (YP_188854); Hypothetical protein; GAF-domain-containing protein (fragment 2) 1339142..1339279 Staphylococcus carnosus subsp. carnosus TM300 7550547 YP_002634416.1 CDS rpsD NC_012121.1 1339529 1340134 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1339529..1340134 Staphylococcus carnosus subsp. carnosus TM300 7550548 YP_002634417.1 CDS Sca_1327 NC_012121.1 1340452 1341201 R orf in full length conserved in staphylococci,similar to C terminus Glycerophosphoryl diester phosphodiesterase glpQ,(EC 3.1.4.46) Bacillus subtilis, 293AA, Expect = 4e-82, Identities = 79/255 (30%), Positives = 146/255 (57%), Gaps = 15/255 (5%) ,(P37965) Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) (Glycerophosphodiester phosphodiesterase),InterPro: Glycerophosphoryl diester phosphodiesterase; Hypothetical protein; putative glycerophosphoryl diester phosphodiesterase complement(1340452..1341201) Staphylococcus carnosus subsp. carnosus TM300 7552077 YP_002634418.1 CDS Sca_1328 NC_012121.1 1341273 1341713 D low similarity to Organic hydroperoxide resistance protein ohrB (Bacillus subtilis),(P70736) Hypothetical 15.2 kDa protein in xcpR 3region (ORF2),InterPro: OsmC-like protein; Hypothetical protein; hypothetical protein 1341273..1341713 Staphylococcus carnosus subsp. carnosus TM300 7550549 YP_002634419.1 CDS Sca_1329 NC_012121.1 1341958 1343115 D similar to soluble hydrogenase, small subunit, (EC 1.12.-.-), Synechococcus sp. (strain PCC 6716), 384AA,Expect = 1e-146, Identities = 140/383 (36%), Positives = 226/383 (59%), Gaps = 4/383 (1%) (P14776) Soluble hydrogenase small subunit (EC 1.12.-.-) (Tritium exchange subunit),InterPro: Aminotransferase class V; Hypothetical protein; putative soluble hydrogenase subunit 1341958..1343115 Staphylococcus carnosus subsp. carnosus TM300 7550550 YP_002634420.1 CDS serA NC_012121.1 1343108 1344700 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1343108..1344700 Staphylococcus carnosus subsp. carnosus TM300 7550551 YP_002634421.1 CDS Sca_1331 NC_012121.1 1344752 1345873 R conserved in staphylococci,(Q9CKJ5) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGP); Hypothetical protein; hypothetical protein complement(1344752..1345873) Staphylococcus carnosus subsp. carnosus TM300 7552125 YP_002634422.1 CDS Sca_1332 NC_012121.1 1345997 1347481 R full length conserved in staphylococci,,N terminal similar to PTS system, N-acetylglucosamine-specific IIABC component nagE,(EC 2.7.1.69) ,Escherichia coli, 648AA,Expect = 8e-87, Identities = 214/501 (42%), Positives = 301/501 (60%), Gaps = 53/501 (10%),(P09323) PTS system N-acetylglucosamine-specific IIABC component (EIIABC-Nag) (N-acetylglucosamine-permease IIABC component) (Phosphotransferase enzyme II ABC component) (EC 2.7.1.69) (EII-Nag),InterPro: Phosphotransferase system EIIC; Hypothetical protein; putative PTS system IIBC component complement(1345997..1347481) Staphylococcus carnosus subsp. carnosus TM300 7550552 YP_002634423.1 CDS Sca_1333 NC_012121.1 1347613 1348221 R (Q42670) 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT),InterPro: Phospholipid/glycerol acyltransferase,1-acyl-sn-glycerol-3-phosphate acyltransferase; Hypothetical protein; hypothetical protein complement(1347613..1348221) Staphylococcus carnosus subsp. carnosus TM300 7550553 YP_002634424.1 CDS Sca_1334 NC_012121.1 1348426 1349616 D ORF conserved in staphylococci.,C terminal similar to protease do [Precursor], (EC 3.4.21.-), ,degP,Escherichia coli, 474AA, Expect = 5e-44, Identities = 120/282 (42%), Positives = 170/282 (60%), Gaps = 18/282 (6%),(O34358) Probable serine protease do-like htrA (EC 3.4.21.-),InterPro: Peptidase S1 chymotrypsin family; Hypothetical protein; hypothetical protein 1348426..1349616 Staphylococcus carnosus subsp. carnosus TM300 7550554 YP_002634425.1 CDS tyrS NC_012121.1 1349686 1350948 R similar to tyrosyl-tRNA synthetase tyrS (EC 6.1.1.1), ,Bacillus stearothermophilus, 419AA, Expect = 0.0, Identities = 247/417 (59%), Positives = 313/417 (75%), Gaps = 1/417 (0%),(P00952) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS),InterPro: Tyrosyl-tRNA synthetase class Ib; Hypothetical protein; tyrosyl-tRNA synthetase complement(1349686..1350948) Staphylococcus carnosus subsp. carnosus TM300 7550555 YP_002634426.1 CDS sgtA NC_012121.1 1351323 1352228 D Similar to N terminal parts of PBP1B (several bacteria). Maybe truncated ORF.,(P02918) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)],InterPro: Glycosyl transferase family 51; Hypothetical protein; putative transglycosylase 1351323..1352228 Staphylococcus carnosus subsp. carnosus TM300 7552276 YP_002634427.1 CDS fhs NC_012121.1 1352285 1353952 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1352285..1353952) Staphylococcus carnosus subsp. carnosus TM300 7552128 YP_002634428.1 CDS acsA NC_012121.1 1354346 1356058 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1354346..1356058) Staphylococcus carnosus subsp. carnosus TM300 7551574 YP_002634429.1 CDS acuA NC_012121.1 1356290 1356922 D similar to acetoin utilization protein acuA (EC 2.3.1.-),Bacillus subtilis, 210AA, Expect = 1e-122,Identities = 114/210 (54%), Positives = 144/210 (68%) ,(P39065) Acetoin utilization protein acuA (EC 2.3.1.-),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; acetoin utilization protein 1356290..1356922 Staphylococcus carnosus subsp. carnosus TM300 7551365 YP_002634430.1 CDS acuC NC_012121.1 1356935 1358089 D similar to acetoin utilization protein acuC,Bacillus subtilis, 387AA, Expect = 1e-99, Identities = 166/368 (45%), Positives = 241/368 (65%), Gaps = 1/368 (0%),(Q8NW34) Acetoin utilization protein acuC,InterPro: Histone deacetylase family; Hypothetical protein; putative acetoin utilization protein 1356935..1358089 Staphylococcus carnosus subsp. carnosus TM300 7551367 YP_002634431.1 CDS ccpA NC_012121.1 1358164 1359153 R High confidence in function and specificity; catabolite control protein A complement(1358164..1359153) Staphylococcus carnosus subsp. carnosus TM300 7551368 YP_002634432.1 CDS ccpA NC_012121.1 1359059 >1359154 R Hypothetical protein; catabolite control protein A complement(1359059..>1359154) Staphylococcus carnosus subsp. carnosus TM300 7551462 YP_002634433.1 CDS aroA NC_012121.1 1359438 1360526 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(1359438..1360526) Staphylococcus carnosus subsp. carnosus TM300 7551463 YP_002634434.1 CDS Sca_1345 NC_012121.1 1360786 1362162 R Hypothetical protein; hypothetical protein complement(1360786..1362162) Staphylococcus carnosus subsp. carnosus TM300 7551418 YP_002634435.1 CDS Sca_1346 NC_012121.1 1362299 1362739 R (P40779) Hypothetical protein ytxG; Hypothetical protein; hypothetical protein complement(1362299..1362739) Staphylococcus carnosus subsp. carnosus TM300 7550556 YP_002634436.1 CDS murC NC_012121.1 1362810 1364123 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1362810..1364123) Staphylococcus carnosus subsp. carnosus TM300 7550557 YP_002634437.1 CDS Sca_1348 NC_012121.1 1364142 1367810 R C terminus is similar to DNA translocase ftsK,Synonym: DNA translocase SpoIIIE, Bacillus subtilis,787AA, Expect = 1e-123, Identities = 245/508 (48%),Positives = 350/508 (68%), Gaps = 13/508 (2%) ,(Q8R5S4) DNA translocase ftsK,InterPro: Cell divisionFtsK/SpoIIIE protein; Hypothetical protein; FtsK/SpoIIIE family protein complement(1364142..1367810) Staphylococcus carnosus subsp. carnosus TM300 7551821 YP_002634438.1 CDS Sca_1349 NC_012121.1 1367836 1368435 R (Q8EPH5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS),InterPro: t-RNA-binding region; Hypothetical protein; hypothetical protein complement(1367836..1368435) Staphylococcus carnosus subsp. carnosus TM300 7550558 YP_002634439.1 CDS Sca_1350 NC_012121.1 1368451 1369329 R (Q9UWW3) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase subunit I); Hypothetical protein; hypothetical protein complement(1368451..1369329) Staphylococcus carnosus subsp. carnosus TM300 7550559 YP_002634440.1 CDS Sca_1351 NC_012121.1 1369425 1369733 R (O14463) Thioredoxin (TR),InterPro: Thioredoxin domain 2; Hypothetical protein; putative thioredoxin complement(1369425..1369733) Staphylococcus carnosus subsp. carnosus TM300 7550560 YP_002634441.1 CDS pepA NC_012121.1 1369755 1370831 R similar to Glutamyl-aminopeptidase pepA, (EC 3.4.11.7),,Lactococcus lactis (subsp. cremoris) (Streptococcus cremoris), 355AA, Expect = 1e-70,Identities = 142/355 (40%), Positives = 208/355 (58%),Gaps = 8/355 (2%),(Q48677) Glutamyl-aminopeptidase (EC 3.4.11.7),InterPro: Peptidase M42; Hypothetical protein; putative glutamyl-aminopeptidase complement(1369755..1370831) Staphylococcus carnosus subsp. carnosus TM300 7550561 YP_002634442.1 CDS Sca_1353 NC_012121.1 1370916 1371227 D conserved in staphylococci.,(Q9FIZ9) Putative aquaporin NIP4.1 (NOD26-like intrinsic protein 4.1); Hypothetical protein; hypothetical protein 1370916..1371227 Staphylococcus carnosus subsp. carnosus TM300 7551924 YP_002634443.1 CDS Sca_1354 NC_012121.1 1371289 1372113 R Hypothetical protein; metallo-beta-lactamase superfamily protein complement(1371289..1372113) Staphylococcus carnosus subsp. carnosus TM300 7550562 YP_002634444.1 CDS trmB NC_012121.1 1372221 1372856 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1372221..1372856) Staphylococcus carnosus subsp. carnosus TM300 7550563 YP_002634445.1 CDS Sca_1356 NC_012121.1 1372870 1373358 R incomplete alignment to staphylococci conserved proteins,(P71392) LicA protein; Hypothetical protein; hypothetical protein complement(1372870..1373358) Staphylococcus carnosus subsp. carnosus TM300 7550564 YP_002634446.1 CDS dat NC_012121.1 1373995 1374849 R similar to D-alanine aminotransferase dat (EC 2.6.1.21), Bacillus sp. (strain YM-1), 283AA, Expect = 2e-74, Identities = 141/273 (51%), Positives = 182/273 (66%) ,(P54694) D-alanine aminotransferase (EC 2.6.1.21) (D-aspartate aminotransferase) (D-amino acid aminotransferase) (D-amino acid transaminase) (DAAT),InterPro: D-amino acid aminotransferase; Hypothetical protein; D-alanine aminotransferase complement(1373995..1374849) Staphylococcus carnosus subsp. carnosus TM300 7550565 YP_002634447.1 CDS pepV NC_012121.1 1374854 1376263 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1374854..1376263) Staphylococcus carnosus subsp. carnosus TM300 7551515 YP_002634448.1 CDS Sca_1359 NC_012121.1 1376469 1376891 R Hypothetical protein; hypothetical protein complement(1376469..1376891) Staphylococcus carnosus subsp. carnosus TM300 7551927 YP_002634449.1 CDS Sca_1360 NC_012121.1 1376910 1377605 R similar to ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70), rsuA, Escherichia coli, 231AA,Expect = 2e-82, Identities = 96/232 (41%), Positives = 144/232 (62%), Gaps = 5/232 (2%),(P33918) Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) (16S pseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (Uracil hydrolyase),InterPro: Pseudouridine synthase Rsu; Hypothetical protein; RNA pseudouridine synthase complement(1376910..1377605) Staphylococcus carnosus subsp. carnosus TM300 7550566 YP_002634450.1 CDS Sca_1361 NC_012121.1 1377605 1379239 R similar to Stage V sporulation protein B,spoVB,,Bacillus subtilis, 518 AA, Expect = 1e-128,Identities = 102/482 (21%), Positives = 208/482 (43%),Gaps = 32/482 (6%),and to Hypothetical protein yabM,Bacillus subtilis, 532 AA, Expect = 1e-118,Identities = 107/428 (25%), Positives = 203/428 (47%), Gaps = 23/428 (5%) ,(Q00758) Stage V sporulation protein B,InterPro: Polysaccharide biosynthesis protein; Hypothetical protein; putative polysaccharide biosynthesis protein complement(1377605..1379239) Staphylococcus carnosus subsp. carnosus TM300 7550567 YP_002634451.1 CDS Sca_1362 NC_012121.1 1379562 1380776 D (Q9Z4P0) Fumarate reductase flavoprotein subunit precursor (EC 1.3.99.1) (Iron(III)-induced flavocytochrome C3) (Ifc3),InterPro: HI0933-like protein; Hypothetical protein; hypothetical protein 1379562..1380776 Staphylococcus carnosus subsp. carnosus TM300 7550568 YP_002634452.1 CDS Sca_1363 NC_012121.1 1380833 1381150 R (P54433) Hypothetical UPF0033 protein yrkF,InterPro: Rhodanese-like; Hypothetical protein; hypothetical protein complement(1380833..1381150) Staphylococcus carnosus subsp. carnosus TM300 7550569 YP_002634453.1 CDS leuS'' NC_012121.1 1381171 1382643 R (Q8CNU8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS),InterPro: Aminoacyl-tRNA synthetase class Ia,Similar to C-terminus of leucyl-rRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] (BAB57922); Hypothetical protein; leucyl-tRNA synthetase (fragment 2) complement(1381171..1382643) Staphylococcus carnosus subsp. carnosus TM300 7550570 YP_002634454.1 CDS leuS' NC_012121.1 1382561 1383586 R (Q8CNU8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS),InterPro: Aminoacyl-tRNA synthetase class Ia,Similar to N-terminus of leucyl-rRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] (BAB57922); Hypothetical protein; leucyl-tRNA synthetase (fragment 1) complement(1382561..1383586) Staphylococcus carnosus subsp. carnosus TM300 7551747 YP_002634455.1 CDS Sca_1366 NC_012121.1 1384081 1385259 R (P21191) Quinolone resistance protein norA,InterPro: Major facilitator superfamily; Hypothetical protein; hypothetical protein complement(1384081..1385259) Staphylococcus carnosus subsp. carnosus TM300 7551746 YP_002634456.1 CDS Sca_1367 NC_012121.1 1385528 1386484 D (P45476) Hypothetical protein yhcC,InterPro: Conserved hypothetical protein 1212; Hypothetical protein; hypothetical protein 1385528..1386484 Staphylococcus carnosus subsp. carnosus TM300 7550571 YP_002634457.1 CDS Sca_1368 NC_012121.1 1386489 1387046 D (O66128) Menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-),InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; hypothetical protein 1386489..1387046 Staphylococcus carnosus subsp. carnosus TM300 7550572 YP_002634458.1 CDS ldh NC_012121.1 1387109 1388065 R similar to L-lactate dehydrogenase ldh (EC 1.1.1.27), Staphylococcus epidermidis, 316AA, Expect = 1e-112, Identities = 209/309 (67%), Positives = 247/309 (79%),(Q8CMZ0) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH),InterPro: Lactate/malate dehydrogenase; Hypothetical protein; L-lactate dehydrogenase complement(1387109..1388065) Staphylococcus carnosus subsp. carnosus TM300 7550573 YP_002634459.1 CDS Sca_1370 NC_012121.1 1388258 1389088 R similar to lysophospholipase [Bacillus halodurans C-125], 260AA, Expect = 5e-44, Identities = 93/262 (35%),Positives = 145/262 (55%), Gaps = 3/262,(1%),(O35678) Monoglyceride lipase (EC 3.1.1.23),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; putative lysophospholipase complement(1388258..1389088) Staphylococcus carnosus subsp. carnosus TM300 7551740 YP_002634460.1 CDS Sca_1371 NC_012121.1 1389344 1390339 D similar to proline dehydrogenase [Bacillus halodurans C-125], 319AA, 280AA aligned, Expect = 2e-26,Identities = 73/280 (26%), Positives = 144/280 (51%), Gaps = 13/280 (4%),only local similarity to ,(P95629) Bifunctional putA protein [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C dehydrogenase)],InterPro: Proline dehydrogenase; Hypothetical protein; hypothetical protein 1389344..1390339 Staphylococcus carnosus subsp. carnosus TM300 7550574 YP_002634461.1 CDS ribH NC_012121.1 1390408 1390866 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1390408..1390866) Staphylococcus carnosus subsp. carnosus TM300 7550575 YP_002634462.1 CDS ribA NC_012121.1 1390899 1392086 R similar to Riboflavin biosynthesis protein ribA,(EC 3.5.4.25),,Bacillus subtilis, Expect = 1e-179, Identities = 214/396 (54%), Positives = 279/396 (70%), Gaps = 4/396 (1%),(P74104) Riboflavin biosynthesis protein ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25); 34-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)],InterPro: 34-Dihydroxy-2-butanone 4-phosphate synthase; Hypothetical protein; riboflavin biosynthesis protein complement(1390899..1392086) Staphylococcus carnosus subsp. carnosus TM300 7552026 YP_002634463.1 CDS ribB NC_012121.1 1392096 1392728 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1392096..1392728) Staphylococcus carnosus subsp. carnosus TM300 7552021 YP_002634464.1 CDS ribD NC_012121.1 1392735 1393784 R Riboflavin biosynthesis protein ribD (EC 3.5.4.26),,Bacillus subtilis, Expect = 7e-72, Identities = 148/353 (41%), Positives = 211/353 (59%), Gaps = 9/353 (2%), (P17618) Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)],InterPro: Riboflavin biosynthesis protein RibD; Hypothetical protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1392735..1393784) Staphylococcus carnosus subsp. carnosus TM300 7552022 YP_002634465.1 CDS Sca_1376 NC_012121.1 1394190 1395671 R conserved in staphylococci,(P77148) Hypothetical protein ydhS; Hypothetical protein; hypothetical protein complement(1394190..1395671) Staphylococcus carnosus subsp. carnosus TM300 7552025 YP_002634466.1 CDS Sca_1377 NC_012121.1 1395809 1396654 R (P52081) Bifunctional autolysin precursor [Includes: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (EC 3.2.1.96)],InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Hypothetical protein; hypothetical protein complement(1395809..1396654) Staphylococcus carnosus subsp. carnosus TM300 7550576 YP_002634467.1 CDS Sca_1378 NC_012121.1 1396974 1397195 R conserved in staphylococci; Hypothetical protein; hypothetical protein complement(1396974..1397195) Staphylococcus carnosus subsp. carnosus TM300 7550577 YP_002634468.1 CDS Sca_1379 NC_012121.1 1397398 1398333 D no Shine Dalgarno sequence,InterPro: Sigma-70 region 2; Hypothetical protein; hypothetical protein 1397398..1398333 Staphylococcus carnosus subsp. carnosus TM300 7550578 YP_002634469.1 CDS Sca_1380 NC_012121.1 1398317 1398769 R conserved in staphylococci; Hypothetical protein; hypothetical protein complement(1398317..1398769) Staphylococcus carnosus subsp. carnosus TM300 7550579 YP_002634470.1 CDS Sca_1381 NC_012121.1 1398897 1399613 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(1398897..1399613) Staphylococcus carnosus subsp. carnosus TM300 7550580 YP_002634471.1 CDS Sca_1382 NC_012121.1 1399798 1400103 D conserved in staphylococci; Hypothetical protein; hypothetical protein 1399798..1400103 Staphylococcus carnosus subsp. carnosus TM300 7550581 YP_002634472.1 CDS Sca_1383 NC_012121.1 1400174 1400545 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1400174..1400545 Staphylococcus carnosus subsp. carnosus TM300 7550582 YP_002634473.1 CDS Sca_1384 NC_012121.1 1400550 1400894 D conserved in staphylococci,(Q8CS28) Protein crcB homolog,InterPro: Camphor resistance CrcB protein; Hypothetical protein; hypothetical protein 1400550..1400894 Staphylococcus carnosus subsp. carnosus TM300 7550583 YP_002634474.1 CDS Sca_1385 NC_012121.1 1400941 1401864 R similar to ADP-ribosyl-[dinitrogen reductase] glycohydrolase (EC 3.2.2.24) draG, Rhodospirillum rubrum,Expect = 5e-98, Identities = 90/304 (29%), Positives = 134/304 (44%), Gaps = 47/304 (15%),(P14300) ADP-ribosyl-[dinitrogen reductase] glycohydrolase (EC 3.2.2.24) (ADP-ribosylglycohydrolase) (Dinitrogenase reductase activating glycohydrolase),InterPro: ADP-ribosylglycohydrolase; Hypothetical protein; hypothetical protein complement(1400941..1401864) Staphylococcus carnosus subsp. carnosus TM300 7550584 YP_002634475.1 CDS Sca_1386 NC_012121.1 1401875 1402717 R similar to plant metabolite dehydrogenase,(O60218) Aldo-keto reductase family 1 member B10 (EC 1.1.1.-) (Aldose reductase-like) (ARL-1) (Small intestine reductase) (SI reductase) (Aldose reductase-related protein) (ARP) (hARP),InterPro: Aldo/keto reductase; Hypothetical protein; hypothetical protein complement(1401875..1402717) Staphylococcus carnosus subsp. carnosus TM300 7550585 YP_002634476.1 CDS tnp' NC_012121.1 1402915 >1403034 D Similar to N-terminus (aa 5-40) of transposase for ISSha1 [Staphylococcus haemolyticus JCSC1435] (BAE03687): 438 aa; Hypothetical protein; transposase (fragment 1) 1402915..>1403034 Staphylococcus carnosus subsp. carnosus TM300 7550586 YP_002634477.1 CDS tnp'' NC_012121.1 1403101 1404231 D Similar to C-terminal part (aa 41-438) of transposase for ISSha1 [Staphylococcus haemolyticus JCSC1435](BAE03687): 438 aa ,(Q06126) Transposase for insertion sequence element IS1001,InterPro: Transposase IS204/IS1001/IS1096/IS1165; Hypothetical protein; transposase (fragment 2) 1403101..1404231 Staphylococcus carnosus subsp. carnosus TM300 7552192 YP_002634478.1 CDS Sca_1388 NC_012121.1 1404331 1405236 R C terminal 250aa are similar to conserved proteins,(Q8CG48) Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (XCAP-E homolog) (FGF-inducible protein 16); Hypothetical protein; hypothetical protein complement(1404331..1405236) Staphylococcus carnosus subsp. carnosus TM300 7552193 YP_002634479.1 CDS metK NC_012121.1 1405328 1406524 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1405328..1406524) Staphylococcus carnosus subsp. carnosus TM300 7550587 YP_002634480.1 CDS pckA NC_012121.1 1406911 1408503 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1406911..1408503 Staphylococcus carnosus subsp. carnosus TM300 7551780 YP_002634481.1 CDS Sca_1391 NC_012121.1 1408553 1409308 R (P39839) Probable peptidase yuxL (EC 3.4.21.-),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein complement(1408553..1409308) Staphylococcus carnosus subsp. carnosus TM300 7551911 YP_002634482.1 CDS Sca_1392 NC_012121.1 1409316 1409789 R (P32090) Mutator mutT protein (78-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) (EC 3.6.1.-) (dGTP pyrophosphohydrolase),InterPro: NUDIX hydrolase; Hypothetical protein; hypothetical protein complement(1409316..1409789) Staphylococcus carnosus subsp. carnosus TM300 7550588 YP_002634483.1 CDS Sca_1393 NC_012121.1 1409878 1410132 D (Q8CS22) Hypothetical UPF0161 protein SE1462,InterPro: Protein of unknown function DUF37; Hypothetical protein; hypothetical protein 1409878..1410132 Staphylococcus carnosus subsp. carnosus TM300 7550589 YP_002634484.1 CDS Sca_1394 NC_012121.1 1410129 1411136 R similar to O-succinylbenzoate synthase (EC 4.2.1.-), ,menC, Bacillus subtilis 492AA, only 335AA aligned,Expect = 3e-25, Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 35/335 (10%),(O34514) O-succinylbenzoate synthase (EC 4.2.1.-) (OSB synthase) (OSBS) (4-(2-carboxyphenyl)-4-oxybutyric acid synthase) (O-succinylbenzoic acid synthase); Hypothetical protein; hypothetical protein complement(1410129..1411136) Staphylococcus carnosus subsp. carnosus TM300 7550590 YP_002634485.1 CDS menE NC_012121.1 1411140 1412528 R similar to O-succinylbenzoate--CoA ligase menE, (EC 6.2.1.26), ,Staphylococcus aureus, Expect = 1e-163,Identities = 299/490 (61%), Positives = 355/490 (72%),Gaps = 31/490 (6%), (Q8NVZ4) O-succinylbenzoate--CoA ligase (EC 6.2.1.26) (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase),InterPro: AMP-dependent synthetase and ligase; Hypothetical protein; O-succinylbenzoic acid--CoA ligase complement(1411140..1412528) Staphylococcus carnosus subsp. carnosus TM300 7550591 YP_002634486.1 CDS Sca_1396 NC_012121.1 1412644 1413366 R (P40798) Shuttle craft protein; Hypothetical protein; hypothetical protein complement(1412644..1413366) Staphylococcus carnosus subsp. carnosus TM300 7551772 YP_002634487.1 CDS Sca_1397 NC_012121.1 1413550 1414074 D Hypothetical protein; hypothetical protein 1413550..1414074 Staphylococcus carnosus subsp. carnosus TM300 7550592 YP_002634488.1 CDS Sca_1398 NC_012121.1 1414342 1414980 D (O14578) Citron protein (Rho-interacting serine/threonine kinase 21) (Fragment); Hypothetical protein; hypothetical protein 1414342..1414980 Staphylococcus carnosus subsp. carnosus TM300 7550593 YP_002634489.1 CDS Sca_1399 NC_012121.1 1416219 1416842 R (P46326) Hypothetical protein yxbB,InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; hypothetical protein complement(1416219..1416842) Staphylococcus carnosus subsp. carnosus TM300 7552237 YP_002634490.1 CDS Sca_1400 NC_012121.1 1417014 1417550 R (P39667) Hypothetical protein yrxA (ORF1),InterPro: 3H domain; Hypothetical protein; hypothetical protein complement(1417014..1417550) Staphylococcus carnosus subsp. carnosus TM300 7550595 YP_002634491.1 CDS nifS NC_012121.1 1417537 1418640 R similar to Cysteine desulfurase nifS, (EC 2.8.1.7),Anabaena azollae 400AA, 379AA aligned, Expect = 1e-148 Identities = 99/379 (26%), Positives = 181/379 (47%), Gaps = 13/379 (3%) ,(Q43884) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase metalloclusters biosynthesis protein nifS),InterPro: Aminotransferase class V; Hypothetical protein; putative Cysteine desulfurase/aminotransferase,class V complement(1417537..1418640) Staphylococcus carnosus subsp. carnosus TM300 7550596 YP_002634492.1 CDS nadB NC_012121.1 1418742 1420085 D similar to L-aspartate oxidase nadB, (EC 1.4.3.16),Bacillus subtilis,,only 393AA aligned, Expect = 2e-68,Identities = 155/400 (38%), Positives = 220/400 (55%),Gaps = 15/400 (3%),(Q929Z2) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate synthetase B),InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal; Hypothetical protein; putative L-aspartate oxidase 1418742..1420085 Staphylococcus carnosus subsp. carnosus TM300 7551853 YP_002634493.1 CDS nadC NC_012121.1 1420266 1421099 D Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]nadC,(EC 2.4.2.19), Bacillus subtilis,Expect = 1e-108, Identities = 128/276 (46%), Positives = 171/276 (61%),(P39666) Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) (Quinolinate phosphoribosyltransferase [decarboxylating]) (QAPRTase) (General stress protein 70) (GSP70),InterPro: Nicotinate-nucleotide pyrophosphorylase; Hypothetical protein; nicotinate-nucleotide pyrophosphorylase-like protein 1420266..1421099 Staphylococcus carnosus subsp. carnosus TM300 7551839 YP_002634494.1 CDS nadA NC_012121.1 1421099 1422199 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1421099..1422199 Staphylococcus carnosus subsp. carnosus TM300 7551840 YP_002634495.1 CDS Sca_1405 NC_012121.1 1422268 1422825 R Hypothetical protein; hypothetical protein complement(1422268..1422825) Staphylococcus carnosus subsp. carnosus TM300 7551838 YP_002634496.1 CDS hemY NC_012121.1 1423045 1424445 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(1423045..1424445) Staphylococcus carnosus subsp. carnosus TM300 7550597 YP_002634497.1 CDS hemH NC_012121.1 1424438 1425394 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1424438..1425394) Staphylococcus carnosus subsp. carnosus TM300 7551687 YP_002634498.1 CDS hemE NC_012121.1 1425425 1426462 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1425425..1426462) Staphylococcus carnosus subsp. carnosus TM300 7551683 YP_002634499.1 CDS Sca_1409 NC_012121.1 1426771 1427274 D similar to signal transduction protein (Staphylococcus aureus),(P38049) Hypothetical protein yhgC; Hypothetical protein; hypothetical protein 1426771..1427274 Staphylococcus carnosus subsp. carnosus TM300 7551682 YP_002634500.1 CDS ecsB NC_012121.1 1427336 1428562 R similar to Protein ecsB, Bacillus subtilis, Expect = 1e-132, Identities = 101/367 (27%), Positives = 178/367 (48%), Gaps = 12/367 (3%),(P55340) Protein ecsB; Hypothetical protein; putative ABC transporter ecsB complement(1427336..1428562) Staphylococcus carnosus subsp. carnosus TM300 7550598 YP_002634501.1 CDS ecsA NC_012121.1 1428559 1429296 R similar to ABC-type transporter ATP-binding protein ecsA,Synonyms: prsT,Bacillus subtilis, Expect = 1e-79,Identities = 140/238 (58%), Positives = 182/238 (76%) ,(P55339) ABC-type transporter ATP-binding protein ecsA,InterPro: ABC transporter; Hypothetical protein; ABC transporter complement(1428559..1429296) Staphylococcus carnosus subsp. carnosus TM300 7551546 YP_002634502.1 CDS hit NC_012121.1 1429433 1429858 D (O07513) Hit protein,InterPro: Histidine triad (HIT) protein; Hypothetical protein; cell-cycle regulation Hit-like protein 1429433..1429858 Staphylococcus carnosus subsp. carnosus TM300 7551545 YP_002634503.1 CDS Sca_1413 NC_012121.1 1429928 1430404 D (Q38694) Agamous-like MADS box protein AGL9 homolog (OM1); Hypothetical protein; hypothetical protein 1429928..1430404 Staphylococcus carnosus subsp. carnosus TM300 7551699 YP_002634504.1 CDS Sca_1414 NC_012121.1 1430634 1431200 D (Q9PKE3) Inner membrane protein oxaA; Hypothetical protein; hypothetical protein 1430634..1431200 Staphylococcus carnosus subsp. carnosus TM300 7550599 YP_002634505.1 CDS prsA1 NC_012121.1 1431408 1432400 D similar to Foldase protein prsA 1 [Precursor] prsA1 (EC 5.2.1.8), Bacillus anthracis, Expect = 2e-15,Identities = 96/297 (32%), Positives = 163/297 (54%), Gaps = 35/297 (11%),(P60747) Foldase protein prsA precursor (EC 5.2.1.8),InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase; Hypothetical protein; putative foldase protein prsA 1 1431408..1432400 Staphylococcus carnosus subsp. carnosus TM300 7550600 YP_002634506.1 CDS Sca_1416 NC_012121.1 1432478 1433419 R catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM complement(1432478..1433419) Staphylococcus carnosus subsp. carnosus TM300 7551964 YP_002634507.1 CDS Sca_1417 NC_012121.1 1433419 1436352 R (Q9JMH9) Myosin XVIIIA (Myosin 18A) (Myosin containing PDZ domain); Hypothetical protein; hypothetical protein complement(1433419..1436352) Staphylococcus carnosus subsp. carnosus TM300 7550601 YP_002634508.1 CDS Sca_1418 NC_012121.1 1436352 1437539 R (O26641) DNA double-strand break repair protein mre11,InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein complement(1436352..1437539) Staphylococcus carnosus subsp. carnosus TM300 7550602 YP_002634509.1 CDS Sca_1419 NC_012121.1 1437740 1438084 R (Q8CP17) Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70); Hypothetical protein; hypothetical protein complement(1437740..1438084) Staphylococcus carnosus subsp. carnosus TM300 7550603 YP_002634510.1 CDS Sca_1420 NC_012121.1 1438242 1439372 R (P54794) Monoamine regulon transcriptional regulator,InterPro: Protein of unknown function DUF445; Hypothetical protein; hypothetical protein complement(1438242..1439372) Staphylococcus carnosus subsp. carnosus TM300 7550604 YP_002634511.1 CDS Sca_1421 NC_012121.1 1439565 1440029 R (O27383) Putative HTH-type transcriptional regulator MTH1328,InterPro: Forkhead-associated (FHA); Hypothetical protein; hypothetical protein complement(1439565..1440029) Staphylococcus carnosus subsp. carnosus TM300 7550605 YP_002634512.1 CDS Sca_1422 NC_012121.1 1440430 1441710 R (P58734) C4-dicarboxylate transport protein,InterPro: Sodium:dicarboxylate symporter; Hypothetical protein; putative proton/glutamate symporter family protein complement(1440430..1441710) Staphylococcus carnosus subsp. carnosus TM300 7550606 YP_002634513.1 CDS Sca_1423 NC_012121.1 1441859 1442488 R similar to two-component response regulator [Bacillus halodurans C-125],Expect = 8e-48,Identities = 91/210 (43%), Positives = 151/210 (71%), Gaps = 7/210 (3%),(P55184) Hypothetical sensory transduction protein yxjL,InterPro: Response regulator receiver; Hypothetical protein; putative two-component response regulator complement(1441859..1442488) Staphylococcus carnosus subsp. carnosus TM300 7550607 YP_002634514.1 CDS Sca_1424 NC_012121.1 1442494 1443618 R similar to Bacillus halodurans two-component sensor histidine kinase BH2214 TR:Q9KAS3, Expect = 9e-37,Identities = 90/260 (34%), Positives = 139/260 (53%), Gaps = 10/260 (3%),(P54663) Sensor protein degS (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; putative two-component sensor histidine kinase complement(1442494..1443618) Staphylococcus carnosus subsp. carnosus TM300 7550608 YP_002634515.1 CDS Sca_1425 NC_012121.1 1443756 1444583 D similar to RNA pseudouridylate synthase (Staphylococcus aureus),(P54604) Hypothetical pseudouridine synthase yhcT (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase),InterPro: Pseudouridine synthase RluD; Hypothetical protein; hypothetical protein 1443756..1444583 Staphylococcus carnosus subsp. carnosus TM300 7550609 YP_002634516.1 CDS fumC NC_012121.1 1444633 1446021 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1444633..1446021) Staphylococcus carnosus subsp. carnosus TM300 7550610 YP_002634517.1 CDS Sca_1427 NC_012121.1 1446195 1446611 R Hypothetical protein; hypothetical protein complement(1446195..1446611) Staphylococcus carnosus subsp. carnosus TM300 7551469 YP_002634518.1 CDS Sca_1428 NC_012121.1 1446757 1447356 R (O35000) Glucosamine-6-phosphate deaminase 1 (EC 3.5.99.6) (Glucosamine-6-phosphate isomerase 1) (GNPDA 1) (GlcN6P deaminase 1),InterPro: Glucosamine/galactosamine-6-phosphate isomerase; Hypothetical protein; hypothetical protein complement(1446757..1447356) Staphylococcus carnosus subsp. carnosus TM300 7550611 YP_002634519.1 CDS Sca_1429 NC_012121.1 1447603 1448073 R (P32813) Hypothetical 18.2 kDa protein in gldA 3region (ORF3),InterPro: RNA methyltransferase TrmH group 2; Hypothetical protein; putative rRNA methylase complement(1447603..1448073) Staphylococcus carnosus subsp. carnosus TM300 7550612 YP_002634520.1 CDS Sca_1430 NC_012121.1 1448080 1449207 R (P32815) Hypothetical protein in gldA 3region (ORF5) (Fragment),InterPro: 4Fe-4S cluster binding; Hypothetical protein; hypothetical protein complement(1448080..1449207) Staphylococcus carnosus subsp. carnosus TM300 7550613 YP_002634521.1 CDS glnQ NC_012121.1 1449275 1450000 R similar to glutamine transport ATP-binding protein glnQ,,Bacillus stearothermophilus, Expect = 3e-81,Identities = 140/241 (58%), Positives = 177/241 (73%),(P27675) Glutamine transport ATP-binding protein glnQ,InterPro: ABC transporter; Hypothetical protein; glutamate ABC transporter ATP-binding protein complement(1449275..1450000) Staphylococcus carnosus subsp. carnosus TM300 7550614 YP_002634522.1 CDS Sca_1432 NC_012121.1 1449993 1451468 R similar to glutamine-binding periplasmic protein Streptococcus pyogenes,(P54536) Probable amino-acid ABC transporter permease protein yqiY,InterPro: Bacterial extracellular solute-binding protein family 3; Hypothetical protein; hypothetical protein complement(1449993..1451468) Staphylococcus carnosus subsp. carnosus TM300 7551637 YP_002634523.1 CDS Sca_1433 NC_012121.1 1451614 1452660 R similar to Treponema pallidum regulatory protein and to Streptococcus pyogenes probable regulatory protein ,InterPro: Phosphotransferase system EIIC; Hypothetical protein; hypothetical protein complement(1451614..1452660) Staphylococcus carnosus subsp. carnosus TM300 7550615 YP_002634524.1 CDS perR NC_012121.1 1460674 1461129 R similar to Peroxide operon regulator perR, Bacillus subtilis, Expect = 2e-54, Identities = 96/142 (67%),Positives = 121/142 (85%),(P71086) Peroxide operon regulator,InterPro: Ferric-uptake regulator; Hypothetical protein; transcription regulator Fur family complement(1460674..1461129) Staphylococcus carnosus subsp. carnosus TM300 7551345 YP_002634525.1 CDS Sca_1435 NC_012121.1 1461224 1462174 R (Q58424) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH),InterPro: D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain; Hypothetical protein; hypothetical protein complement(1461224..1462174) Staphylococcus carnosus subsp. carnosus TM300 7551928 YP_002634526.1 CDS Sca_1436 NC_012121.1 1462180 1462635 R similar to bacterioferritin comigratory protein bcp, Escherichia coli, Expect = 4e-26, Identities = 59/143 (41%), Positives = 83/143 (58%),(P44411) Bacterioferritin comigratory protein homolog,InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Hypothetical protein; putative bacterioferritin comigratory protein complement(1462180..1462635) Staphylococcus carnosus subsp. carnosus TM300 7550617 YP_002634527.1 CDS gsaB NC_012121.1 1462718 1464007 D converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1462718..1464007 Staphylococcus carnosus subsp. carnosus TM300 7550618 YP_002634528.1 CDS Sca_1438 NC_012121.1 1464117 1465217 D (Q58791) Hypothetical protein MJ1396; Hypothetical protein; hypothetical protein 1464117..1465217 Staphylococcus carnosus subsp. carnosus TM300 7551668 YP_002634529.1 CDS Sca_1439 NC_012121.1 1465265 1467001 R (P45861) Hypothetical ABC transporter ATP-binding protein ywjA,InterPro: ABC transporter transmembrane region; Hypothetical protein; ABC transporter ATP-binding protein complement(1465265..1467001) Staphylococcus carnosus subsp. carnosus TM300 7550619 YP_002634530.1 CDS Sca_1440 NC_012121.1 1467174 1467719 R InterPro: Protein of unknown function DUF402; Hypothetical protein; hypothetical protein complement(1467174..1467719) Staphylococcus carnosus subsp. carnosus TM300 7550620 YP_002634531.1 CDS Sca_1441 NC_012121.1 1467783 1468841 R similar to A/G-specific adenine glycosylase mutY (EC 3.2.2.-),Escherichia coli,Expect = 2e-49, Identities = 123/354 (34%), Positives = 182/354 (51%), Gaps = 20/354 (5%),(P17802) A/G-specific adenine glycosylase (EC 3.2.2.-),InterPro: A/G-specific adenine glycosylase MutY; Hypothetical protein; putative A/G-specific adenine glycosylase complement(1467783..1468841) Staphylococcus carnosus subsp. carnosus TM300 7550621 YP_002634532.1 CDS Sca_1442 NC_012121.1 1468946 1469929 D InterPro: Predicted membrane-bound metal-dependent hydrolase; Hypothetical protein; hypothetical protein 1468946..1469929 Staphylococcus carnosus subsp. carnosus TM300 7550622 YP_002634533.1 CDS Sca_1443 NC_012121.1 1469968 1470819 R (Q8K2X1) Potential phospholipid-transporting ATPase VD (EC 3.6.3.1) (ATPVD); Hypothetical protein; hypothetical protein complement(1469968..1470819) Staphylococcus carnosus subsp. carnosus TM300 7550623 YP_002634534.1 CDS Sca_1444 NC_012121.1 1470830 1472356 R low similarity to teichoic acid export ATP-binding protein tagH (Bacillus subtilis, Expect = 8e-10,Identities = 82/439 (18%), Positives = 177/439 (40%), Gaps = 30/439 (6%)),(P42954) Teichoic acid export ATP-binding protein tagH (EC 3.6.3.40) (Teichoic acid-transporting ATPase),InterPro: ABC transporter; Hypothetical protein; hypothetical protein complement(1470830..1472356) Staphylococcus carnosus subsp. carnosus TM300 7550624 YP_002634535.1 CDS Sca_1445 NC_012121.1 1472373 1472663 R (Q9UII4) Cyclin-E binding protein; Hypothetical protein; hypothetical protein complement(1472373..1472663) Staphylococcus carnosus subsp. carnosus TM300 7550625 YP_002634536.1 CDS recX NC_012121.1 1472680 1473483 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1472680..1473483) Staphylococcus carnosus subsp. carnosus TM300 7550626 YP_002634537.1 CDS Sca_1447 NC_012121.1 1473664 1474476 R monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase complement(1473664..1474476) Staphylococcus carnosus subsp. carnosus TM300 7550627 YP_002634538.1 CDS Sca_1448 NC_012121.1 1474669 1475196 R (Q53719) Hypothetical protein SAV1875/SA1692/MW1815 (ORF1),InterPro: Protein of unknown function ThiJ/PfpI; Hypothetical protein; hypothetical protein complement(1474669..1475196) Staphylococcus carnosus subsp. carnosus TM300 7550628 YP_002634539.1 CDS Sca_1449 NC_012121.1 1475321 1475494 R Hypothetical protein; hypothetical protein complement(1475321..1475494) Staphylococcus carnosus subsp. carnosus TM300 7550629 YP_002634540.1 CDS Sca_1450 NC_012121.1 1475717 1476865 D (P56414) Molybdenum cofactor biosynthesis protein A,InterPro: Radical SAM; Hypothetical protein; hypothetical protein 1475717..1476865 Staphylococcus carnosus subsp. carnosus TM300 7550630 YP_002634541.1 CDS Sca_1451 NC_012121.1 1476916 1477437 R (Q9PJK7) Putative acyl-CoA thioester hydrolase TC0822 (EC 3.1.2.-),InterPro: Thioesterase superfamily; Hypothetical protein; hypothetical protein complement(1476916..1477437) Staphylococcus carnosus subsp. carnosus TM300 7550631 YP_002634542.1 CDS ampS NC_012121.1 1477468 1478706 R similar to Aminopeptidase ampS (EC 3.4.11.-),Bacillus subtilis, Expect = 0.0, Identities = 205/412 (49%), Positives = 278/412 (67%), Gaps = 2/412 (0%),(P39762) Aminopeptidase ampS (EC 3.4.11.-),InterPro: Peptidase M29 thermophilic metalloprotease; Hypothetical protein; aminopeptidase ampS complement(1477468..1478706) Staphylococcus carnosus subsp. carnosus TM300 7550632 YP_002634543.1 CDS Sca_1453 NC_012121.1 1478745 1478951 R Hypothetical protein; hypothetical protein complement(1478745..1478951) Staphylococcus carnosus subsp. carnosus TM300 7551394 YP_002634544.1 CDS Sca_1454 NC_012121.1 1479187 1479651 D similar to eucaryotic low molecular weight phosphotyrosine protein phosphatase (EC 3.1.3.48)(P81693),(Low molecular weight cytosolic acid phosphatase) (EC 3.1.3.2) (PTPase),InterPro: Low molecular weight phosphotyrosine protein phosphatase; Hypothetical protein; hypothetical protein 1479187..1479651 Staphylococcus carnosus subsp. carnosus TM300 7550633 YP_002634545.1 CDS Sca_1455 NC_012121.1 1479659 1479955 D (P09922) Interferon-induced GTP-binding protein Mx1 (Influenza resistance protein); Hypothetical protein; hypothetical protein 1479659..1479955 Staphylococcus carnosus subsp. carnosus TM300 7550634 YP_002634546.1 CDS Sca_1456 NC_012121.1 1480074 1481150 D (Q8DDS2) tRNA processing ribonuclease BN (EC 3.1.-.-) (RNase BN),InterPro: Ribonuclease BN; Hypothetical protein; hypothetical protein 1480074..1481150 Staphylococcus carnosus subsp. carnosus TM300 7550635 YP_002634547.1 CDS Sca_1457 NC_012121.1 1481360 1481938 D similar to carbonic anhydrase, prokaryotic type,(Q10612) Hypothetical protein Rv1284/MT1322/Mb1315,InterPro: Carbonic anhydrase prokaryotic; Hypothetical protein; hypothetical protein 1481360..1481938 Staphylococcus carnosus subsp. carnosus TM300 7550636 YP_002634548.1 CDS vraR NC_012121.1 1481988 1482605 R putative vancomycin resistance associated two-component regulator ,(Q51373) Response regulator gacA (Global activator),InterPro: Response regulator receiver; Hypothetical protein; putative response regulator complement(1481988..1482605) Staphylococcus carnosus subsp. carnosus TM300 7550637 YP_002634549.1 CDS vraS NC_012121.1 1482607 1483650 R similar to vancomycin resistance associated two-component sensor histidine kinase (Staphylococcus aureus),(P27668) Sensor protein uhpB (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; histidine kinase sensor complement(1482607..1483650) Staphylococcus carnosus subsp. carnosus TM300 7552298 YP_002634550.1 CDS Sca_1460 NC_012121.1 1483647 1484348 R (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3); Hypothetical protein; hypothetical protein complement(1483647..1484348) Staphylococcus carnosus subsp. carnosus TM300 7552299 YP_002634551.1 CDS Sca_1461 NC_012121.1 1484364 1484759 R (Q9RT21) Trigger factor (TF); Hypothetical protein; hypothetical protein complement(1484364..1484759) Staphylococcus carnosus subsp. carnosus TM300 7550638 YP_002634552.1 CDS map NC_012121.1 1484893 1485660 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1484893..1485660) Staphylococcus carnosus subsp. carnosus TM300 7550639 YP_002634553.1 CDS Sca_1463 NC_012121.1 1485912 1486898 D only local similarity to: (P54538) Hypothetical protein yqjA; Hypothetical protein; hypothetical protein 1485912..1486898 Staphylococcus carnosus subsp. carnosus TM300 7551768 YP_002634554.1 CDS Sca_1464 NC_012121.1 1486948 1487673 R (Q8Y7R3) Cobyric acid synthase; Hypothetical protein; hypothetical protein complement(1486948..1487673) Staphylococcus carnosus subsp. carnosus TM300 7550640 YP_002634555.1 CDS Sca_1465 NC_012121.1 1487670 1488986 R similar to Mur ligase family protein,(Q9JSZ5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme); Hypothetical protein; hypothetical protein complement(1487670..1488986) Staphylococcus carnosus subsp. carnosus TM300 7550641 YP_002634556.1 CDS Sca_1466 NC_012121.1 1489155 1489712 D similar to putative DNA polymerase III, alpha chain PolC type (staphylococcus aureus),(Q8RA32) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII),InterPro: Exonuclease; Hypothetical protein; hypothetical protein 1489155..1489712 Staphylococcus carnosus subsp. carnosus TM300 7550642 YP_002634557.1 CDS dinP NC_012121.1 1489748 1490818 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1489748..1490818) Staphylococcus carnosus subsp. carnosus TM300 7550643 YP_002634558.1 CDS Sca_1468 NC_012121.1 1491094 1491414 D similar to Glucose starvation-inducible protein B gsiB, Bacillus subtilis, Expect = 2e-13, Identities = 60/99 (60%), Positives = 79/99 (79%),(P26907) Glucose starvation-inducible protein B (General stress protein B); Hypothetical protein; putative general stress protein 1491094..1491414 Staphylococcus carnosus subsp. carnosus TM300 7551523 YP_002634559.1 CDS Sca_1469 NC_012121.1 1491495 1492856 R similar to 23S rRNA (Uracil-5-)-methyltransferase rumA (EC 2.1.1.-),,23S rRNA(M-5-U1939)-methyltransferase,from Escherichia coli,,Expect = 1e-45,Identities = 136/448 (30%), Positives = 219/448 (48%),Gaps = 50/448 (11%),(Q9CJX3) 23S rRNA (Uracil-5-)-methyltransferase rumA (EC 2.1.1.-) (23S rRNA(M-5-U1939)-methyltransferase),InterPro: tRNA (uracil-5-)-methyltransferase/TrmA; Hypothetical protein; putative RNA methyltransferase complement(1491495..1492856) Staphylococcus carnosus subsp. carnosus TM300 7550644 YP_002634560.1 CDS Sca_1470 NC_012121.1 1492917 1493837 R similar to YegS from E. coli; putative lipid kinase complement(1492917..1493837) Staphylococcus carnosus subsp. carnosus TM300 7550645 YP_002634561.1 CDS gatB NC_012121.1 1494088 1495515 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1494088..1495515) Staphylococcus carnosus subsp. carnosus TM300 7550646 YP_002634562.1 CDS gatA NC_012121.1 1495532 1496989 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1495532..1496989) Staphylococcus carnosus subsp. carnosus TM300 7551612 YP_002634563.1 CDS gatC NC_012121.1 1496989 1497291 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1496989..1497291) Staphylococcus carnosus subsp. carnosus TM300 7551611 YP_002634564.1 CDS putP NC_012121.1 1497680 1499221 D Hypothetical protein; high affinity proline permease 1497680..1499221 Staphylococcus carnosus subsp. carnosus TM300 7551613 YP_002634565.1 CDS Sca_1475 NC_012121.1 1499284 1500321 R Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase complement(1499284..1500321) Staphylococcus carnosus subsp. carnosus TM300 7551985 YP_002634566.1 CDS Sca_1476 NC_012121.1 1500493 1501695 R (P39850) Capsular polysaccharide biosynthesis protein capA; Hypothetical protein; hypothetical protein complement(1500493..1501695) Staphylococcus carnosus subsp. carnosus TM300 7550647 YP_002634567.1 CDS lig NC_012121.1 1501716 1503722 R DNA ligase ligA, (EC 6.5.1.2), Escherichia coli,,Expect = 1e-158, Identities = 302/668 (45%), Positives = 415/668 (62%), Gaps = 9/668 (1%),(O87703) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD+]),InterPro: NAD-dependent DNA ligase; Hypothetical protein; DNA ligase complement(1501716..1503722) Staphylococcus carnosus subsp. carnosus TM300 7550648 YP_002634568.1 CDS pcrA NC_012121.1 1503726 1505921 R ATP-dependent DNA helicase pcrA (EC 3.6.1.-),,Bacillus stearothermophilus,(Q99SY2) ATP-dependent DNA helicase pcrA (EC 3.6.1.-),InterPro: ATP-dependent DNA helicase PcrA; Hypothetical protein; ATP-dependent DNA helicase complement(1503726..1505921) Staphylococcus carnosus subsp. carnosus TM300 7551750 YP_002634569.1 CDS pcrB NC_012121.1 1505922 1506611 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein complement(1505922..1506611) Staphylococcus carnosus subsp. carnosus TM300 7551913 YP_002634570.1 CDS Sca_1480 NC_012121.1 1506734 1506844 R Hypothetical protein; hypothetical protein complement(1506734..1506844) Staphylococcus carnosus subsp. carnosus TM300 7551914 YP_002634571.1 CDS Sca_1481 NC_012121.1 1506828 1507130 R similar to putative DNA-binding protein Staphylococcus aureus; Hypothetical protein; hypothetical protein complement(1506828..1507130) Staphylococcus carnosus subsp. carnosus TM300 7550649 YP_002634572.1 CDS purB NC_012121.1 1507251 1508549 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1507251..1508549) Staphylococcus carnosus subsp. carnosus TM300 7550650 YP_002634573.1 CDS Sca_1483 NC_012121.1 1508760 1508936 R Hypothetical protein; hypothetical protein complement(1508760..1508936) Staphylococcus carnosus subsp. carnosus TM300 7551972 YP_002634574.1 CDS Sca_1484 NC_012121.1 1508926 1509495 R (P61544) Hypothetical UPF0316 protein SA1727; Hypothetical protein; hypothetical protein complement(1508926..1509495) Staphylococcus carnosus subsp. carnosus TM300 7550651 YP_002634575.1 CDS nadE NC_012121.1 1509556 1510389 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1509556..1510389) Staphylococcus carnosus subsp. carnosus TM300 7550652 YP_002634576.1 CDS Sca_1486 NC_012121.1 1510391 1511860 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1510391..1511860) Staphylococcus carnosus subsp. carnosus TM300 7551841 YP_002634577.1 CDS nos NC_012121.1 1512109 1513182 D Nitric oxide synthase oxygenase (EC 1.-.-.), NOSoxy-like protein,SANOS, Staphylococcus aureus,,Expect = 1e-141,Identities = 242/358 (67%), Positives = 288/358 (80%),Gaps = 2/358 (0%),(O54705) Nitric oxide synthase inducible (EC 1.14.13.39) (NOS type II) (Inducible NOS) (iNOS),InterPro: Nitric oxide synthase NOS; Hypothetical protein; nitric oxide synthase oxygenase 1512109..1513182 Staphylococcus carnosus subsp. carnosus TM300 7550653 YP_002634578.1 CDS Sca_1488 NC_012121.1 1513216 1514025 D similar to putative prephenate dehydratase Staphylococcus aureus,Expect = 3e-86, Identities = 158/266 (59%), Positives = 202/266 (75%), Gaps = 2/266 (0%),(Q58054) Probable prephenate dehydratase (EC 4.2.1.51) (PDT),InterPro: Prephenate dehydratase with ACT region; Hypothetical protein; hypothetical protein 1513216..1514025 Staphylococcus carnosus subsp. carnosus TM300 7551859 YP_002634579.1 CDS drrC NC_012121.1 1514129 1516402 D similar to daunorubicin resistance protein (drrC),L.monocytogenes_F2365 ,Expect = 0.0, Identities = 378/747 (50%), Positives = 517/747 (69%), Gaps = 8/747 (1%),similar to excinuclease ABC (subunit A),L.monocytogenes, ,Expect = 0.0,Identities = 377/747 (50%), Positives = 518/747 (69%), Gaps = 8/747 (1%),(Q56242) UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A),InterPro: ABC transporter; Hypothetical protein; putative daunorubicin resistance protein 1514129..1516402 Staphylococcus carnosus subsp. carnosus TM300 7550654 YP_002634580.1 CDS aldH NC_012121.1 1516462 1517838 R similar to probable aldehyde dehydrogenase,Bacillus subtilis,,Expect = 1e-129, Identities = 223/447 (49%), Positives = 308/447 (68%), Gaps = 2/447 (0%),(P39616) Probable aldehyde dehydrogenase ywdH (EC 1.2.1.3),InterPro: Aldehyde dehydrogenase; Hypothetical protein; putative aldehyde dehydrogenase complement(1516462..1517838) Staphylococcus carnosus subsp. carnosus TM300 7551542 YP_002634581.1 CDS ppaC NC_012121.1 1518081 1519007 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(1518081..1519007) Staphylococcus carnosus subsp. carnosus TM300 7551386 YP_002634582.1 CDS Sca_1492 NC_012121.1 1519083 1519634 R (P37532) Hypothetical protein yaaI,InterPro: Isochorismatase hydrolase family; Hypothetical protein; hypothetical protein complement(1519083..1519634) Staphylococcus carnosus subsp. carnosus TM300 7551952 YP_002634583.1 CDS Sca_1493 NC_012121.1 1519770 1520882 D (Q10325) Mst2 protein,InterPro: Parallel beta-helix repeat; Hypothetical protein; hypothetical protein 1519770..1520882 Staphylococcus carnosus subsp. carnosus TM300 7550655 YP_002634584.1 CDS Sca_1494 NC_012121.1 1520935 1521030 R Similar to C-terminus of putative sodium:sulfate symporter [Staphylococcus aureus subsp. aureus MRSA252] (YP_041382); Hypothetical protein; hypothetical protein complement(1520935..1521030) Staphylococcus carnosus subsp. carnosus TM300 7550656 YP_002634585.1 CDS Sca_1495 NC_012121.1 1521037 1522497 R (Q9ES88) Solute carrier family 13 member 2 (Renal sodium/dicarboxylate cotransporter) (Na(+)/dicarboxylate cotransporter 1) (NaDC-1),InterPro: Sodium/sulphate symporter,Similar to N-terminus of putative sodium:sulfate symporter [Staphylococcus aureus subsp. aureus MRSA252] (YP_041382); Hypothetical protein; hypothetical protein complement(1521037..1522497) Staphylococcus carnosus subsp. carnosus TM300 7550657 YP_002634586.1 CDS Sca_1496 NC_012121.1 1522730 1523764 R (O86281) Hypothetical protein ywcC (ORFB); Hypothetical protein; hypothetical protein complement(1522730..1523764) Staphylococcus carnosus subsp. carnosus TM300 7550658 YP_002634587.1 CDS Sca_1497 NC_012121.1 1523936 1524340 D (P54561) Hypothetical protein yqjX; Hypothetical protein; hypothetical protein 1523936..1524340 Staphylococcus carnosus subsp. carnosus TM300 7550659 YP_002634588.1 CDS Sca_1498 NC_012121.1 1524388 1524627 R (P48231) Hypothetical 132.5 kDa protein in TOP2-MKT1 intergenic region; Hypothetical protein; hypothetical protein complement(1524388..1524627) Staphylococcus carnosus subsp. carnosus TM300 7550660 YP_002634589.1 CDS Sca_1499 NC_012121.1 1525001 1526044 D (Q44258) 1-carboxy-3-chloro-34-dihydroxycyclo hexa-15-diene dehydrogenase (EC 1.-.-.-); Hypothetical protein; hypothetical protein 1525001..1526044 Staphylococcus carnosus subsp. carnosus TM300 7550661 YP_002634590.1 CDS Sca_1500 NC_012121.1 1526089 1526604 R (Q8K9Q5) Exoribonuclease II (EC 3.1.13.1) (Ribonuclease II) (RNase II); Hypothetical protein; hypothetical protein complement(1526089..1526604) Staphylococcus carnosus subsp. carnosus TM300 7550662 YP_002634591.1 CDS Sca_1501 NC_012121.1 1526921 1527481 R Hypothetical protein; hypothetical protein complement(1526921..1527481) Staphylococcus carnosus subsp. carnosus TM300 7550663 YP_002634592.1 CDS Sca_1502 NC_012121.1 1527654 1528133 R (P49468) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit); Hypothetical protein; hypothetical protein complement(1527654..1528133) Staphylococcus carnosus subsp. carnosus TM300 7550664 YP_002634593.1 CDS Sca_1503 NC_012121.1 1528363 1528926 D (Q96419) Thioredoxin H-type (TRX-H),InterPro: Thioredoxin domain 2; Hypothetical protein; hypothetical protein 1528363..1528926 Staphylococcus carnosus subsp. carnosus TM300 7550665 YP_002634594.1 CDS Sca_1504 NC_012121.1 1528985 1529713 R Hypothetical protein; hypothetical protein complement(1528985..1529713) Staphylococcus carnosus subsp. carnosus TM300 7550666 YP_002634595.1 CDS Sca_1505 NC_012121.1 1529710 1530597 R (P72335) Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I),InterPro: ABC transporter; Hypothetical protein; hypothetical protein complement(1529710..1530597) Staphylococcus carnosus subsp. carnosus TM300 7550667 YP_002634596.1 CDS Sca_1506 NC_012121.1 1530612 1531298 R Hypothetical protein; hypothetical protein complement(1530612..1531298) Staphylococcus carnosus subsp. carnosus TM300 7550668 YP_002634597.1 CDS Sca_1507 NC_012121.1 1531295 1532185 R (P46903) ATP-binding transport protein natA (Na(+) ABC transporter),InterPro: ABC transporter; Hypothetical protein; hypothetical protein complement(1531295..1532185) Staphylococcus carnosus subsp. carnosus TM300 7550669 YP_002634598.1 CDS Sca_1508 NC_012121.1 1532182 1532562 R (P54590) Hypothetical transcriptional regulator yhcF,InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; hypothetical protein complement(1532182..1532562) Staphylococcus carnosus subsp. carnosus TM300 7550670 YP_002634599.1 CDS Sca_1509 NC_012121.1 1533133 1534428 D similar to aspartate transaminase protein (staphylococcus epidermidis),(P00505) Aspartate aminotransferase mitochondrial precursor (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase-2); Hypothetical protein; hypothetical protein 1533133..1534428 Staphylococcus carnosus subsp. carnosus TM300 7550671 YP_002634600.1 CDS Sca_1510 NC_012121.1 1534537 1534686 D Hypothetical protein; hypothetical protein 1534537..1534686 Staphylococcus carnosus subsp. carnosus TM300 7550672 YP_002634601.1 CDS Sca_1511 NC_012121.1 1534670 1535968 D similar to IgG-binding protein sbi (staphylococcus aureus),Expect = 3e-34, Identities = 125/456 (27%),Positives = 223/456 (48%), Gaps = 26/456 (5%),(Q99XA2) Immunoglobulin G binding protein A precursor (IgG binding protein A) (Staphylococcal protein A),InterPro: Ig-binding B; Hypothetical protein; putative IgG-binding protein 1534670..1535968 Staphylococcus carnosus subsp. carnosus TM300 7550673 YP_002634602.1 CDS Sca_1512 NC_012121.1 1536030 1536323 R Hypothetical protein; hypothetical protein complement(1536030..1536323) Staphylococcus carnosus subsp. carnosus TM300 7550674 YP_002634603.1 CDS Sca_1513 NC_012121.1 1536393 1536851 R local similarity to:,(P31728) Probable D-methionine-binding lipoprotein metQ precursor (28 kDa outer membrane protein),InterPro: NLPA lipoprotein; Hypothetical protein; hypothetical protein complement(1536393..1536851) Staphylococcus carnosus subsp. carnosus TM300 7550675 YP_002634604.1 CDS ltaE NC_012121.1 1537081 1538106 D similar to low-specificity L-threonine aldolase ltaE (EC 4.1.2.5),,Pseudomonas sp. (strain NCIMB 10558),Expect = 1e-143, Identities = 99/346 (28%),Positives = 155/346 (44%), Gaps = 21/346 (6%), (O50584) Low-specificity L-threonine aldolase (EC 4.1.2.5) (Low-specificity L-TA); Hypothetical protein; putative L-threonine aldolase 1537081..1538106 Staphylococcus carnosus subsp. carnosus TM300 7550676 YP_002634605.1 CDS Sca_1515 NC_012121.1 1538982 1539701 R Hypothetical protein; hypothetical protein complement(1538982..1539701) Staphylococcus carnosus subsp. carnosus TM300 7551758 YP_002634606.1 CDS Sca_1516 NC_012121.1 1540295 1540873 D Hypothetical protein; hypothetical protein 1540295..1540873 Staphylococcus carnosus subsp. carnosus TM300 7550677 YP_002634607.1 CDS Sca_1517 NC_012121.1 1540924 1541217 R Hypothetical protein; hypothetical protein complement(1540924..1541217) Staphylococcus carnosus subsp. carnosus TM300 7550678 YP_002634608.1 CDS Sca_1518 NC_012121.1 1541338 1541529 R Hypothetical protein; hypothetical protein complement(1541338..1541529) Staphylococcus carnosus subsp. carnosus TM300 7550679 YP_002634609.1 CDS Sca_1519 NC_012121.1 1541578 1542306 R Hypothetical protein; hypothetical protein complement(1541578..1542306) Staphylococcus carnosus subsp. carnosus TM300 7550680 YP_002634610.1 CDS Sca_1520 NC_012121.1 1542387 1542935 R (Q9PRB3) Hypothetical protein UU032; Hypothetical protein; hypothetical protein complement(1542387..1542935) Staphylococcus carnosus subsp. carnosus TM300 7550681 YP_002634611.1 CDS Sca_1521 NC_012121.1 1542935 1543390 R Hypothetical protein; putative phage-associated protein complement(1542935..1543390) Staphylococcus carnosus subsp. carnosus TM300 7550682 YP_002634612.1 CDS Sca_1522 NC_012121.1 1543512 1543850 R (Q10367) Hypothetical protein C22E12.17c in chromosome I,InterPro: Bacterial regulatory protein LuxR family; Hypothetical protein; hypothetical protein complement(1543512..1543850) Staphylococcus carnosus subsp. carnosus TM300 7550683 YP_002634613.1 CDS Sca_1523 NC_012121.1 1543847 1544161 R Hypothetical protein; hypothetical protein complement(1543847..1544161) Staphylococcus carnosus subsp. carnosus TM300 7550684 YP_002634614.1 CDS Sca_1524 NC_012121.1 1544454 1544990 R (O73683) Alzheimers disease amyloid A4 protein homolog precursor [Contains: Beta-amyloid protein (Beta-APP) (A-beta)]; Hypothetical protein; hypothetical protein complement(1544454..1544990) Staphylococcus carnosus subsp. carnosus TM300 7550685 YP_002634615.1 CDS Sca_1525 NC_012121.1 1545018 1545494 R (Q43043) Pectinesterase precursor (EC 3.1.1.11) (Pectin methylesterase) (PE),InterPro: Phage terminase small subunit putative P27 family; Hypothetical protein; hypothetical protein complement(1545018..1545494) Staphylococcus carnosus subsp. carnosus TM300 7550686 YP_002634616.1 CDS Sca_1526 NC_012121.1 1546086 1546178 D Hypothetical protein; hypothetical protein 1546086..1546178 Staphylococcus carnosus subsp. carnosus TM300 7550687 YP_002634617.1 CDS Sca_1527 NC_012121.1 1547022 1547480 R Hypothetical protein; hypothetical protein complement(1547022..1547480) Staphylococcus carnosus subsp. carnosus TM300 7550688 YP_002634618.1 CDS Sca_1528 NC_012121.1 1547493 1548128 R Hypothetical protein; hypothetical protein complement(1547493..1548128) Staphylococcus carnosus subsp. carnosus TM300 7550689 YP_002634619.1 CDS Sca_1529 NC_012121.1 1548322 1548786 R Hypothetical protein; hypothetical protein complement(1548322..1548786) Staphylococcus carnosus subsp. carnosus TM300 7550690 YP_002634620.1 CDS Sca_1530 NC_012121.1 1549298 1550818 R (P10277) Putative P4-specific DNA primase (EC 2.7.7.-),InterPro: Poxvirus D5 protein; Hypothetical protein; hypothetical protein complement(1549298..1550818) Staphylococcus carnosus subsp. carnosus TM300 7550691 YP_002634621.1 CDS Sca_1531 NC_012121.1 1550831 1551718 R Hypothetical protein; hypothetical protein complement(1550831..1551718) Staphylococcus carnosus subsp. carnosus TM300 7550692 YP_002634622.1 CDS Sca_1532 NC_012121.1 1551821 1552135 R Hypothetical protein; hypothetical protein complement(1551821..1552135) Staphylococcus carnosus subsp. carnosus TM300 7550693 YP_002634623.1 CDS Sca_1533 NC_012121.1 1552137 1552232 R Hypothetical protein; hypothetical protein complement(1552137..1552232) Staphylococcus carnosus subsp. carnosus TM300 7550694 YP_002634624.1 CDS Sca_1534 NC_012121.1 1552311 1552613 R (P71561) ATP-dependent DNA helicase pcrA (EC 3.6.1.-); Hypothetical protein; hypothetical protein complement(1552311..1552613) Staphylococcus carnosus subsp. carnosus TM300 7550695 YP_002634625.1 CDS Sca_1535 NC_012121.1 1552614 1553243 R (P44189) Hypothetical protein HI1418,InterPro: BRO family N-terminal; Hypothetical protein; hypothetical protein complement(1552614..1553243) Staphylococcus carnosus subsp. carnosus TM300 7550696 YP_002634626.1 CDS Sca_1536 NC_012121.1 1553247 1553459 R Hypothetical protein; hypothetical protein complement(1553247..1553459) Staphylococcus carnosus subsp. carnosus TM300 7550697 YP_002634627.1 CDS Sca_1537 NC_012121.1 1553632 1553751 D (Q9RPQ3) Histidine biosynthesis bifunctional protein hisIE [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)]; Hypothetical protein; hypothetical protein 1553632..1553751 Staphylococcus carnosus subsp. carnosus TM300 7550698 YP_002634628.1 CDS Sca_1538 NC_012121.1 1553780 1554265 D Hypothetical protein; hypothetical protein 1553780..1554265 Staphylococcus carnosus subsp. carnosus TM300 7550699 YP_002634629.1 CDS Sca_1539 NC_012121.1 1554274 1555446 D (Q9CI63) Prophage ps2 probable integrase (Int-TnX),InterPro: Phage integrase; Hypothetical protein; putative integrase 1554274..1555446 Staphylococcus carnosus subsp. carnosus TM300 7550700 YP_002634630.1 CDS groEL NC_012121.1 1555515 1557137 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1555515..1557137) Staphylococcus carnosus subsp. carnosus TM300 7550701 YP_002634631.1 CDS groES NC_012121.1 1557179 1557463 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1557179..1557463) Staphylococcus carnosus subsp. carnosus TM300 7551665 YP_002634632.1 CDS Sca_1542 NC_012121.1 1557682 1558428 D (Q9CDG9) Hypothetical UPF0177 protein yxdF,InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein 1557682..1558428 Staphylococcus carnosus subsp. carnosus TM300 7551666 YP_002634633.1 CDS Sca_1543 NC_012121.1 1558518 1560371 R (Q8T5T1) Midasin (MIDAS-containing protein); Hypothetical protein; serine-aspartate repeat family protein complement(1558518..1560371) Staphylococcus carnosus subsp. carnosus TM300 7550702 YP_002634634.1 CDS Sca_1544 NC_012121.1 1560595 1561395 D (P55177) Hypothetical UPF0012 protein in agr operon (ORF 5),InterPro: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Hypothetical protein; hypothetical protein 1560595..1561395 Staphylococcus carnosus subsp. carnosus TM300 7550703 YP_002634635.1 CDS agrB NC_012121.1 1562286 1562861 D accessory gene regulator B 1562286..1562861 Staphylococcus carnosus subsp. carnosus TM300 7550704 YP_002634636.1 CDS agrD NC_012121.1 1562870 1563007 D Hypothetical protein; AgrD protein 1562870..1563007 Staphylococcus carnosus subsp. carnosus TM300 7551376 YP_002634637.1 CDS agrC NC_012121.1 1563039 1563827 D (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel L type alpha-1 polypeptide isoform 6) (Brain calcium channel II) (BII),Length of gene product similar to AgrC of S. simulans and S. carnosus. AgrC of S. aureus and S. lugdunensis are longer. Adjacent ORF codes for a putative protein similar to the C-terminal part of the larger homologues: probably truncated; Hypothetical protein; autoinducer sensor protein AgrC, probably truncated 1563039..1563827 Staphylococcus carnosus subsp. carnosus TM300 7551379 YP_002634638.1 CDS agrC'' NC_012121.1 1563831 1564334 D similar to C-terminal part of receptor histidine kinase [Staphylococcus aureus]- AgrC (AAG03057),O34427) Sensor protein citS (EC 2.7.3.-),InterPro: ATP-binding region ATPase-like; Hypothetical protein; hypothetical protein 1563831..1564334 Staphylococcus carnosus subsp. carnosus TM300 7551377 YP_002634639.1 CDS agrA NC_012121.1 1564339 1565055 D Hypothetical protein; Accessory gene regulator protein A 1564339..1565055 Staphylococcus carnosus subsp. carnosus TM300 7551378 YP_002634640.1 CDS scrB NC_012121.1 1565102 1566574 R similar to Sucrose-6-phosphate hydrolase scrB (EC 3.2.1.26),,Staphylococcus xylosus, Expect = 1e-134,Identities = 242/490 (49%), Positives = 327/490 (66%),Gaps = 9/490 (1%),(Q05936) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase) (Invertase),InterPro: Sucrose-6-phosphate hydrolase; Hypothetical protein; sucrose-6-phosphate hydrolase complement(1565102..1566574) Staphylococcus carnosus subsp. carnosus TM300 7551375 YP_002634641.1 CDS Sca_1551 NC_012121.1 1566786 1567871 D (P33015) Hypothetical protein yeeE,InterPro: YeeE/YedE; Hypothetical protein; hypothetical protein 1566786..1567871 Staphylococcus carnosus subsp. carnosus TM300 7552114 YP_002634642.1 CDS Sca_1552 NC_012121.1 1567898 1568122 D (P33014) Hypothetical UPF0033 protein yeeD,InterPro: Protein of unknown function UPF0033; Hypothetical protein; hypothetical protein 1567898..1568122 Staphylococcus carnosus subsp. carnosus TM300 7550705 YP_002634643.1 CDS Sca_1553 NC_012121.1 1568172 1568816 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(1568172..1568816) Staphylococcus carnosus subsp. carnosus TM300 7550706 YP_002634644.1 CDS Sca_1554 NC_012121.1 1569413 1571341 D (O05519) Hypothetical ABC transporter ATP-binding protein ydiF,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein 1569413..1571341 Staphylococcus carnosus subsp. carnosus TM300 7550707 YP_002634645.1 CDS gcp NC_012121.1 1571689 1572720 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(1571689..1572720) Staphylococcus carnosus subsp. carnosus TM300 7550708 YP_002634646.1 CDS Sca_1556 NC_012121.1 1572717 1573184 R putative acetyltransferase,(P41227) N-terminal acetyltransferase complex ARD1 subunit homolog (EC 2.3.1.-),InterPro: Ribosomal-protein-alanine acetyltransferase; Hypothetical protein; hypothetical protein complement(1572717..1573184) Staphylococcus carnosus subsp. carnosus TM300 7551616 YP_002634647.1 CDS Sca_1557 NC_012121.1 1573160 1573816 R (P76256) Hypothetical protease yeaZ (EC 3.4.-.-),InterPro: Peptidase M22 glycoprotease metalloprotease; Hypothetical protein; hypothetical protein complement(1573160..1573816) Staphylococcus carnosus subsp. carnosus TM300 7550709 YP_002634648.1 CDS Sca_1558 NC_012121.1 1573794 1574267 R (O05515) Hypothetical UPF0079 protein ydiB,InterPro: Protein of unknown function UPF0079; Hypothetical protein; hypothetical protein complement(1573794..1574267) Staphylococcus carnosus subsp. carnosus TM300 7550710 YP_002634649.1 CDS ilvD NC_012121.1 1574732 1576426 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1574732..1576426 Staphylococcus carnosus subsp. carnosus TM300 7550711 YP_002634650.1 CDS ilvB NC_012121.1 1576433 1578193 D similar to Acetolactate synthase large subunit ilvB (EC 2.2.1.6),,Bacillus subtilis, Expect = 0.0, Identities = 314/572 (54%), Positives = 415/572 (72%), Gaps = 2/572 (0%),(P37251) Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) (Vegetative protein 105) (VEG105),InterPro: Acetolactate synthase large subunit biosynthetic type; Hypothetical protein; acetolactate synthase large subunit 1576433..1578193 Staphylococcus carnosus subsp. carnosus TM300 7551717 YP_002634651.1 CDS ilvH NC_012121.1 1578190 1578663 D similar to Acetolactate synthase small subunit ilvH (EC 2.2.1.6),Synechocystis sp. (strain PCC 6803), Expect = 1e-49,Identities = 55/159 (34%), Positives = 86/159 (54%),Gaps = 6/159 (3%),(Q55141) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS) (Acetohydroxy-acid synthase small subunit) (ALS),InterPro: Acetolactate synthase small subunit; Hypothetical protein; putative acetolactate synthase small (regulatory) subunit 1578190..1578663 Staphylococcus carnosus subsp. carnosus TM300 7551715 YP_002634652.1 CDS ilvC NC_012121.1 1578720 1579724 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1578720..1579724 Staphylococcus carnosus subsp. carnosus TM300 7551719 YP_002634653.1 CDS leuA NC_012121.1 1579750 1581282 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1579750..1581282 Staphylococcus carnosus subsp. carnosus TM300 7551716 YP_002634654.1 CDS leuB NC_012121.1 1581279 1582319 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1581279..1582319 Staphylococcus carnosus subsp. carnosus TM300 7551742 YP_002634655.1 CDS leuC NC_012121.1 1582335 1583717 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1582335..1583717 Staphylococcus carnosus subsp. carnosus TM300 7551743 YP_002634656.1 CDS leuD NC_012121.1 1583710 1584285 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1583710..1584285 Staphylococcus carnosus subsp. carnosus TM300 7551744 YP_002634657.1 CDS ilvA NC_012121.1 1584304 1585572 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 1584304..1585572 Staphylococcus carnosus subsp. carnosus TM300 7551745 YP_002634658.1 CDS Sca_1568 NC_012121.1 1591129 1591584 R (Q99SJ0) Protein sprT-like,InterPro: Putative metallopeptidase (SprT family),SprT; Hypothetical protein; hypothetical protein complement(1591129..1591584) Staphylococcus carnosus subsp. carnosus TM300 7552230 YP_002634659.1 CDS Sca_1569 NC_012121.1 1591592 1593742 R similar to several transcriptional regulatory proteins,(P57072) Hypothetical protein NMA0194,InterPro: Ribonuclease RNase H fold containing; Conserved hypothetical protein; hypothetical protein complement(1591592..1593742) Staphylococcus carnosus subsp. carnosus TM300 7550712 YP_002634660.1 CDS sigB NC_012121.1 1593851 1594621 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB complement(1593851..1594621) Staphylococcus carnosus subsp. carnosus TM300 7550713 YP_002634661.1 CDS rsbW NC_012121.1 1594596 1595075 R binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW complement(1594596..1595075) Staphylococcus carnosus subsp. carnosus TM300 7552130 YP_002634662.1 CDS rsbV NC_012121.1 1595077 1595403 R similar to Anti-sigma-B factor antagonist rsbV,,Bacillus subtilis, Expect = 4e-18, Identities = 43/106 (40%), Positives = 73/106 (68%), Gaps = 1/106 (0%),(P60071) Anti-sigma-B factor antagonist (Anti-anti-sigma-B factor),InterPro: Anti-sigma factor antagonist; Hypothetical protein; putative anti-sigmaB factor antagonist complement(1595077..1595403) Staphylococcus carnosus subsp. carnosus TM300 7552098 YP_002634663.1 CDS rsbU NC_012121.1 1595479 1596480 R similar to Sigma factor sigB regulation protein rsbU (EC 3.1.3.3),Bacillus subtilis, Expect = 1e-147,Identities = 126/332 (37%), Positives = 207/332 (62%),Gaps = 5/332 (1%),(P40399) Phosphoserine phosphatase rsbU (EC 3.1.3.3) (Sigma factor sigB regulation protein rsbU),InterPro: Protein phosphatase 2C-like; Hypothetical protein; putative sigmaB regulation protein RsbU complement(1595479..1596480) Staphylococcus carnosus subsp. carnosus TM300 7552097 YP_002634664.1 CDS Sca_1574 NC_012121.1 1596824 1597171 R (P13976) Protein pemK,InterPro: PemK-like protein; Hypothetical protein; hypothetical protein complement(1596824..1597171) Staphylococcus carnosus subsp. carnosus TM300 7552096 YP_002634665.1 CDS Sca_1575 NC_012121.1 1597171 1597338 R Hypothetical protein; hypothetical protein complement(1597171..1597338) Staphylococcus carnosus subsp. carnosus TM300 7550714 YP_002634666.1 CDS alr NC_012121.1 1597419 1598573 R similar to Alanine racemase (alr), Staphylococcus aureus,,Expect = 1e-149, Identities = 216/384 (56%),Positives = 276/384 (71%), Gaps = 2/384 (0%),(Q9ZAH5) Alanine racemase 1 (EC 5.1.1.1),InterPro: Alanine racemase; Hypothetical protein; alanine racemase complement(1597419..1598573) Staphylococcus carnosus subsp. carnosus TM300 7550715 YP_002634667.1 CDS acpS NC_012121.1 1598637 1598990 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1598637..1598990) Staphylococcus carnosus subsp. carnosus TM300 7551391 YP_002634668.1 CDS Sca_1578 NC_012121.1 1598992 1599477 R (P53154) Glycerol uptake protein,InterPro: Bacterial membrane flanked domain; Hypothetical protein; hypothetical protein complement(1598992..1599477) Staphylococcus carnosus subsp. carnosus TM300 7551364 YP_002634669.1 CDS Sca_1579 NC_012121.1 1599482 1600969 R InterPro: Bacterial membrane flanked domain; Hypothetical protein; hypothetical protein complement(1599482..1600969) Staphylococcus carnosus subsp. carnosus TM300 7550716 YP_002634670.1 CDS Sca_1580 NC_012121.1 1600962 1601432 R InterPro: Bacterial membrane flanked domain; Hypothetical protein; hypothetical protein complement(1600962..1601432) Staphylococcus carnosus subsp. carnosus TM300 7550717 YP_002634671.1 CDS Sca_1581 NC_012121.1 1601592 1603115 R similar to cold-shock DEAD-box protein A, Synonym ATP-dependent RNA helicase deaD, Escherichia coli, Expect = 1e-88,Identities = 183/428 (42%), Positives = 270/428 (63%), Gaps = 7/428 (1%),(P35599) Probable RNA helicase exp9 (Exported protein 9),InterPro: DEAD/DEAH box helicase; Hypothetical protein; putative helicase complement(1601592..1603115) Staphylococcus carnosus subsp. carnosus TM300 7550718 YP_002634672.1 CDS murF NC_012121.1 1603455 1604819 R similar to UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murF, (EC 6.3.2.10), Escherichia coli, Expect = 4e-48, Identities = 148/459 (32%),Positives = 237/459 (51%), Gaps = 16/459 (3%),(P96613) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme),InterPro: UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D -alanyl-D-alanyl ligase; Hypothetical protein; putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase complement(1603455..1604819) Staphylococcus carnosus subsp. carnosus TM300 7550719 YP_002634673.1 CDS ddl NC_012121.1 1604832 1605902 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1604832..1605902) Staphylococcus carnosus subsp. carnosus TM300 7551824 YP_002634674.1 CDS Sca_1584 NC_012121.1 1606160 1607377 D similar to Rod shape-determining protein rodA (mrdB),Escherichia coli,N terminal incomplete alignment,Expect = 1e-32,Identities = 102/331 (30%), Positives = 178/331 (53%), Gaps = 27/331 (8%) ,(P39604) Hypothetical protein ywcF,InterPro: Cell cycle protein; Hypothetical protein; hypothetical protein 1606160..1607377 Staphylococcus carnosus subsp. carnosus TM300 7551518 YP_002634675.1 CDS copA NC_012121.1 1607665 1609866 R N terminal incomplete alignment (74AA not aligned). Rest similar to Copper-transporting P-type ATPase copA (EC 3.6.3.-)Bacillus subtilis,Expect = 0.0, Identities = 384/739 (51%), Positives = 507/739 (68%), Gaps = 24/739 (3%),(O32220) Copper-transporting P-type ATPase copA (EC 3.6.3.-) (CopA protein),InterPro: Copper-translocating P-type ATPase; Hypothetical protein; putative copper-transporting P-type ATPase complement(1607665..1609866) Staphylococcus carnosus subsp. carnosus TM300 7550720 YP_002634676.1 CDS copZ NC_012121.1 1609963 1610172 R similar to Copper chaperone copZ,Synonyms CopZ protein,Copper-ion-binding protein copZ, Bacillus subtilis,,Expect = 5e-09, Identities = 34/69 (49%),Positives = 46/69 (66%),(O32221) Copper chaperone copZ (CopZ protein) (Copper-ion-binding protein),InterPro: Heavy metal binding; Hypothetical protein; putative copper-ion-binding protein complement(1609963..1610172) Staphylococcus carnosus subsp. carnosus TM300 7551482 YP_002634677.1 CDS Sca_1587 NC_012121.1 1610187 1610393 R C terminal similar to copper ion binding protein,(O32620) COP associated protein (Copper ion binding protein),InterPro: Heavy metal binding; Hypothetical protein; hypothetical protein complement(1610187..1610393) Staphylococcus carnosus subsp. carnosus TM300 7551483 YP_002634678.1 CDS Sca_1588 NC_012121.1 1610405 1610698 R (P76424) Hypothetical protein yohL,InterPro: Protein of unknown function DUF156; Hypothetical protein; hypothetical protein complement(1610405..1610698) Staphylococcus carnosus subsp. carnosus TM300 7550721 YP_002634679.1 CDS Sca_1589 NC_012121.1 1610863 1612344 D Cardiolipin synthetase,Synonyms EC 2.7.8.-,Similar to cardiolipin synthase cls, Bacillus pseudofirmus,,Expect = 1e-98, Identities = 205/480 (42%), Positives = 288/480 (60%), Gaps = 14/480 (2%),(Q8CNK3) Cardiolipin synthetase 2 (EC 2.7.8.-) (Cardiolipin synthase 2) (CL synthase 2),InterPro: Phospholipase D/Transphosphatidylase; Hypothetical protein; putative cardiolipin synthetase 1610863..1612344 Staphylococcus carnosus subsp. carnosus TM300 7550722 YP_002634680.1 CDS Sca_1590 NC_012121.1 1612369 1613016 D (P54168) Hypothetical protein ypgQ,InterPro: Metal-dependent phosphohydrolase HD region; Hypothetical protein; hypothetical protein 1612369..1613016 Staphylococcus carnosus subsp. carnosus TM300 7550723 YP_002634681.1 CDS paiA NC_012121.1 1613107 1613619 R similar to B. subtilis regulatory protein PaiA,Expect = 1e-67, Identities = 82/169 (48%), Positives = 126/169 (74%),(P21340) Protease synthase and sporulation negative regulatory protein PAI,InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; putative regulatory protein PaiA complement(1613107..1613619) Staphylococcus carnosus subsp. carnosus TM300 7550724 YP_002634682.1 CDS Sca_1592 NC_012121.1 1613730 1614599 R similar to putative lipoprotein precursor ,(Q8CMK8) Membrane protein oxaA 2 precursor,InterPro: 60 kDa inner membrane protein; Hypothetical protein; hypothetical protein complement(1613730..1614599) Staphylococcus carnosus subsp. carnosus TM300 7551898 YP_002634683.1 CDS thiE NC_012121.1 1614688 1615326 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(1614688..1615326) Staphylococcus carnosus subsp. carnosus TM300 7550725 YP_002634684.1 CDS thiM NC_012121.1 1615327 1616121 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(1615327..1616121) Staphylococcus carnosus subsp. carnosus TM300 7552178 YP_002634685.1 CDS thiD NC_012121.1 1616114 1616935 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(1616114..1616935) Staphylococcus carnosus subsp. carnosus TM300 7552183 YP_002634686.1 CDS tenA NC_012121.1 1616932 1617618 R similar to transcriptional activator tenA ,Bacillus subtilis, Expect = 1e-10,Identities = 55/224 (24%),Positives = 100/224 (44%), Gaps = 9/224 (4%),InterPro: TENA/THI-4 protein; Hypothetical protein; putative transcriptional activator tenA complement(1616932..1617618) Staphylococcus carnosus subsp. carnosus TM300 7552177 YP_002634687.1 CDS sceE'' NC_012121.1 1617895 >1618371 R similar to C-terminal part of sceD protein [Staphylococcus epidermidis RP62A] (YP_189267); Hypothetical protein; SceE (fragment 2) complement(1617895..>1618371) Staphylococcus carnosus subsp. carnosus TM300 7552172 YP_002634688.1 CDS sceE' NC_012121.1 1618301 1618519 R Hypothetical protein; SceE (fragment 1) complement(1618301..1618519) Staphylococcus carnosus subsp. carnosus TM300 7552111 YP_002634689.1 CDS sceA NC_012121.1 1618738 1619451 R (Q99R69) Immunodominant staphylococcal antigen A precursor; Hypothetical protein; SceA protein complement(1618738..1619451) Staphylococcus carnosus subsp. carnosus TM300 7552110 YP_002634690.1 CDS sceD NC_012121.1 1619664 1620362 R (Q8CMZ9) Immunodominant staphylococcal antigen A precursor; Hypothetical protein; SceD protein complement(1619664..1620362) Staphylococcus carnosus subsp. carnosus TM300 7552107 YP_002634691.1 CDS ssb NC_012121.1 1620893 1621330 R (P59927) Single-strand binding protein (SSB) (Helix-destabilizing protein),InterPro: Single-strand binding protein; Hypothetical protein; single strand DNA-binding protein complement(1620893..1621330) Staphylococcus carnosus subsp. carnosus TM300 7552109 YP_002634692.1 CDS Sca_1601 NC_012121.1 1621519 1621968 D Hypothetical protein; hypothetical protein 1621519..1621968 Staphylococcus carnosus subsp. carnosus TM300 7552148 YP_002634693.1 CDS fabZ NC_012121.1 1622019 1622456 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1622019..1622456) Staphylococcus carnosus subsp. carnosus TM300 7550726 YP_002634694.1 CDS murA NC_012121.1 1622661 1623932 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1622661..1623932) Staphylococcus carnosus subsp. carnosus TM300 7551557 YP_002634695.1 CDS Sca_1604 NC_012121.1 1624043 1624276 R Hypothetical protein; hypothetical protein complement(1624043..1624276) Staphylococcus carnosus subsp. carnosus TM300 7551818 YP_002634696.1 CDS atpC NC_012121.1 1624457 1624864 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1624457..1624864) Staphylococcus carnosus subsp. carnosus TM300 7550727 YP_002634697.1 CDS atpD NC_012121.1 1624885 1626300 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1624885..1626300) Staphylococcus carnosus subsp. carnosus TM300 7551433 YP_002634698.1 CDS atpG NC_012121.1 1626323 1627186 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1626323..1627186) Staphylococcus carnosus subsp. carnosus TM300 7551432 YP_002634699.1 CDS atpA'' NC_012121.1 1627222 1628589 R (Q99SF3) ATP synthase alpha chain (EC 3.6.3.14),InterPro: ATP synthase F1 alpha subunit,Similar to C-terminal part of ATP synthase alpha chain [Staphylococcus aureus subsp. aureus MSSA476](CAG43816); Hypothetical protein; ATP synthase alpha chain (fragment 2) complement(1627222..1628589) Staphylococcus carnosus subsp. carnosus TM300 7551436 YP_002634700.1 CDS atpA' NC_012121.1 1628579 1628731 R (P48080) ATP synthase alpha chain (EC 3.6.3.14),Similar to N-terminus of ATP synthase alpha chain [Staphylococcus aureus subsp. aureus MSSA476] (CAG43816); Hypothetical protein; ATP synthase alpha chain (fragment 1) complement(1628579..1628731) Staphylococcus carnosus subsp. carnosus TM300 7551430 YP_002634701.1 CDS atpH NC_012121.1 1628755 1629294 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1628755..1629294) Staphylococcus carnosus subsp. carnosus TM300 7551429 YP_002634702.1 CDS atpF NC_012121.1 1629294 1629818 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B complement(1629294..1629818) Staphylococcus carnosus subsp. carnosus TM300 7551437 YP_002634703.1 CDS atpE NC_012121.1 1629934 1630146 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1629934..1630146) Staphylococcus carnosus subsp. carnosus TM300 7551435 YP_002634704.1 CDS atpB NC_012121.1 1630190 1630915 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1630190..1630915) Staphylococcus carnosus subsp. carnosus TM300 7551434 YP_002634705.1 CDS mnaA NC_012121.1 1631460 1632611 R similar to UDP-N-acetylglucosamine 2-epimerase (mnaA) (bacillus subtilis) Expect = 1e-136 Identities = 238/373 (63%), Positives = 302/373 (80%),(Q9L6R5) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) (UDP-GlcNAc-2-epimerase),InterPro: UDP-N-acetylglucosamine 2-epimerase; Hypothetical protein; UDP-GlcNAc 2-epimerase complement(1631460..1632611) Staphylococcus carnosus subsp. carnosus TM300 7551431 YP_002634706.1 CDS upp NC_012121.1 1632793 1633422 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1632793..1633422) Staphylococcus carnosus subsp. carnosus TM300 7551784 YP_002634707.1 CDS glyA NC_012121.1 1633447 1634685 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1633447..1634685) Staphylococcus carnosus subsp. carnosus TM300 7552281 YP_002634708.1 CDS Sca_1617 NC_012121.1 1634711 1635238 R (P39157) Hypothetical protein ywlG,InterPro: Conserved hypothetical protein 1440; Hypothetical protein; hypothetical protein complement(1634711..1635238) Staphylococcus carnosus subsp. carnosus TM300 7551653 YP_002634709.1 CDS Sca_1618 NC_012121.1 1635383 1635808 R (P39155) Putative low molecular weight protein-tyrosine-phosphatase ywlE (EC 3.1.3.48),InterPro: Low molecular weight phosphotyrosine protein phosphatase; Hypothetical protein; hypothetical protein complement(1635383..1635808) Staphylococcus carnosus subsp. carnosus TM300 7550728 YP_002634710.1 CDS Sca_1619 NC_012121.1 1635805 1636851 R (P39153) Hypothetical protein ywlC,InterPro: Sua5/YciO/YrdC/YwlC; Hypothetical protein; hypothetical protein complement(1635805..1636851) Staphylococcus carnosus subsp. carnosus TM300 7550729 YP_002634711.1 CDS Sca_1620 NC_012121.1 1636943 1637767 R similar to protoporphyrinogen oxidase (hemK) ,(P45873) HemK protein homolog (EC 2.1.1.-),InterPro: Modification methylase HemK family; Hypothetical protein; hypothetical protein complement(1636943..1637767) Staphylococcus carnosus subsp. carnosus TM300 7550730 YP_002634712.1 CDS prfA NC_012121.1 1637775 1638851 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1637775..1638851) Staphylococcus carnosus subsp. carnosus TM300 7550731 YP_002634713.1 CDS tdk NC_012121.1 1638851 1639450 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1638851..1639450) Staphylococcus carnosus subsp. carnosus TM300 7551956 YP_002634714.1 CDS rpmE2 NC_012121.1 1639586 1639849 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(1639586..1639849) Staphylococcus carnosus subsp. carnosus TM300 7552171 YP_002634715.1 CDS rho NC_012121.1 1639981 1641297 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1639981..1641297) Staphylococcus carnosus subsp. carnosus TM300 7552066 YP_002634716.1 CDS Sca_1625 NC_012121.1 1641514 1642941 R (Q25417) Aldehyde dehydrogenase mitochondrial precursor (EC 1.2.1.3) (ALDH class 2) (P51),InterPro: Aldehyde dehydrogenase; Hypothetical protein; putative aldehyde dehydrogenase family protein complement(1641514..1642941) Staphylococcus carnosus subsp. carnosus TM300 7552020 YP_002634717.1 CDS Sca_1626 NC_012121.1 1643066 1643401 R (P96673) Hypothetical UPF0087 protein ydeP,InterPro: Protein of unknown function DUF24; Hypothetical protein; hypothetical protein complement(1643066..1643401) Staphylococcus carnosus subsp. carnosus TM300 7550732 YP_002634718.1 CDS murA2 NC_012121.1 1643466 1644725 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1643466..1644725) Staphylococcus carnosus subsp. carnosus TM300 7550733 YP_002634719.1 CDS fbaA NC_012121.1 1645253 1646110 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase complement(1645253..1646110) Staphylococcus carnosus subsp. carnosus TM300 7551819 YP_002634720.1 CDS Sca_1629 NC_012121.1 1646414 1646947 D (P06629) Hypothetical protein ywjG; Hypothetical protein; hypothetical protein 1646414..1646947 Staphylococcus carnosus subsp. carnosus TM300 7551562 YP_002634721.1 CDS pyrG NC_012121.1 1646996 1648615 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1646996..1648615) Staphylococcus carnosus subsp. carnosus TM300 7550734 YP_002634722.1 CDS Sca_1631 NC_012121.1 1648857 1649411 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(1648857..1649411) Staphylococcus carnosus subsp. carnosus TM300 7551996 YP_002634723.1 CDS Sca_1632 NC_012121.1 1649540 1650400 R similar to spermine/spermidine acetyltransferase blt,(P39909) Spermine/spermidine acetyltransferase (EC 2.3.1.57),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein complement(1649540..1650400) Staphylococcus carnosus subsp. carnosus TM300 7550735 YP_002634724.1 CDS Sca_1633 NC_012121.1 1650472 1650837 R (P16681) PhnB protein; Hypothetical protein; hypothetical protein complement(1650472..1650837) Staphylococcus carnosus subsp. carnosus TM300 7550736 YP_002634725.1 CDS Sca_1634 NC_012121.1 1650926 1651732 D catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 1650926..1651732 Staphylococcus carnosus subsp. carnosus TM300 7550737 YP_002634726.1 CDS Sca_1635 NC_012121.1 1651772 1652437 R (P94528) Probable arabinose-binding protein precursor; Hypothetical protein; hypothetical protein complement(1651772..1652437) Staphylococcus carnosus subsp. carnosus TM300 7550738 YP_002634727.1 CDS Sca_1636 NC_012121.1 1652570 1654954 R (P76052) Aminobenzoyl-glutamate utilization protein B,InterPro: Peptidase M20/M25/M40,Note: aa 1 to 386 similar to amidase [Staphylococcus epidermidis ATCC 12228] (AAO05330) (aa 1 to 386). aa 405 to 792 similar to conserved hypothetical protein [Staphylococcus epidermidis ATCC ,12228] (AAO05329) (aa 8 to 393).; Hypothetical protein; hypothetical protein complement(1652570..1654954) Staphylococcus carnosus subsp. carnosus TM300 7550739 YP_002634728.1 CDS luxS NC_012121.1 1655240 1655704 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1655240..1655704 Staphylococcus carnosus subsp. carnosus TM300 7550740 YP_002634729.1 CDS fmhA'' NC_012121.1 1655861 1656886 R (Q8CPA8) Protein femB,InterPro: Methicillin resistance protein,Similar to C-terminus of fmhA protein / lysostaphin immunity factor [Staphylococcus haemolyticus JCSC1435] (BAE03951) (aa 17 to 413); Hypothetical protein; hypothetical protein complement(1655861..1656886) Staphylococcus carnosus subsp. carnosus TM300 7551759 YP_002634730.1 CDS fmhA' NC_012121.1 1657012 1657113 R similar to N-terminus of fmhA protein / lysostaphin immunity factor [Staphylococcus haemolyticus JCSC1435] (BAE03951) (aa 1 to 16).; Hypothetical protein; hypothetical protein complement(1657012..1657113) Staphylococcus carnosus subsp. carnosus TM300 7551581 YP_002634731.1 CDS dra NC_012121.1 1657268 1657930 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(1657268..1657930) Staphylococcus carnosus subsp. carnosus TM300 7551580 YP_002634732.1 CDS deoD NC_012121.1 1658155 1658862 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1658155..1658862 Staphylococcus carnosus subsp. carnosus TM300 7551540 YP_002634733.1 CDS Sca_1642 NC_012121.1 1658848 1658946 R Hypothetical protein; hypothetical protein complement(1658848..1658946) Staphylococcus carnosus subsp. carnosus TM300 7551520 YP_002634734.1 CDS Sca_1643 NC_012121.1 1658924 1659685 R no complete alignment, local similarity to:,(Q47746) D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase),InterPro: DD-carboxypeptidase VanY; Hypothetical protein; hypothetical protein complement(1658924..1659685) Staphylococcus carnosus subsp. carnosus TM300 7550741 YP_002634735.1 CDS dps NC_012121.1 1659869 1660315 R (P73321) Hypothetical protein slr1894,InterPro: Ferritin and Dps; Hypothetical protein; general stress protein 20U complement(1659869..1660315) Staphylococcus carnosus subsp. carnosus TM300 7550742 YP_002634736.1 CDS Sca_1645 NC_012121.1 1660673 1661056 R (P40761) Hypothetical protein yuxK (ORF2); Hypothetical protein; hypothetical protein complement(1660673..1661056) Staphylococcus carnosus subsp. carnosus TM300 7551539 YP_002634737.1 CDS Sca_1646 NC_012121.1 1661193 1662569 R (P36112) Hypothetical 61.1 kDa protein in YPT52-DBP7 intergenic region; Hypothetical protein; hypothetical protein complement(1661193..1662569) Staphylococcus carnosus subsp. carnosus TM300 7550743 YP_002634738.1 CDS Sca_1647 NC_012121.1 1662700 1662930 R Hypothetical protein; hypothetical protein complement(1662700..1662930) Staphylococcus carnosus subsp. carnosus TM300 7550744 YP_002634739.1 CDS Sca_1648 NC_012121.1 1662958 1663896 R (P39841) Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) (Phosphohexomutase),InterPro: Mannose-6-phosphate isomerase type I; Hypothetical protein; putative mannose-6-phosphate isomerase complement(1662958..1663896) Staphylococcus carnosus subsp. carnosus TM300 7550745 YP_002634740.1 CDS Sca_1649 NC_012121.1 1664453 1665151 R similar to transcriptional regulator, GntR family,(P44487) Uxu operon regulator,InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; hypothetical protein complement(1664453..1665151) Staphylococcus carnosus subsp. carnosus TM300 7550746 YP_002634741.1 CDS Sca_1650 NC_012121.1 1665427 1666089 R (Q04304) Hypothetical 24.9 kDa protein in RCA1-NPL6 intergenic region; Hypothetical protein; hypothetical protein complement(1665427..1666089) Staphylococcus carnosus subsp. carnosus TM300 7550747 YP_002634742.1 CDS czrA NC_012121.1 1666252 1666557 D (P45949) Arsenical resistance operon repressor,InterPro: Bacterial regulatory protein ArsR family; Hypothetical protein; putative repressor protein 1666252..1666557 Staphylococcus carnosus subsp. carnosus TM300 7550748 YP_002634743.1 CDS czrB NC_012121.1 1666581 1667522 D (Q8ZGY6) Zinc transporter zitB,InterPro: Cation efflux protein; Hypothetical protein; putative cation-efflux system membrane protein 1666581..1667522 Staphylococcus carnosus subsp. carnosus TM300 7551509 YP_002634744.1 CDS Sca_1653 NC_012121.1 1667572 1668306 R no complete alignments, truncated ORF?,local similarity to,(Q87ST8) Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55-P1P4-tetraphosphate pyrophosphohydrolase),InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein complement(1667572..1668306) Staphylococcus carnosus subsp. carnosus TM300 7551510 YP_002634745.1 CDS Sca_1654 NC_012121.1 1668437 1669621 D (Q92BW9) DNA translocase ftsK; Hypothetical protein; hypothetical protein 1668437..1669621 Staphylococcus carnosus subsp. carnosus TM300 7550749 YP_002634746.1 CDS Sca_1655 NC_012121.1 1669710 1670564 R (Q8X8L6) Hypothetical protein yigL,InterPro: Cof protein; Hypothetical protein; hypothetical protein complement(1669710..1670564) Staphylococcus carnosus subsp. carnosus TM300 7550750 YP_002634747.1 CDS Sca_1656 NC_012121.1 1670763 1671872 R (P76102) Hypothetical protein ydcM,InterPro: Transposase (probable) IS891/IS1136/IS1341 family; Hypothetical protein; putative transposase complement(1670763..1671872) Staphylococcus carnosus subsp. carnosus TM300 7550751 YP_002634748.1 CDS glmS NC_012121.1 1672276 1674081 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1672276..1674081) Staphylococcus carnosus subsp. carnosus TM300 7550752 YP_002634749.1 CDS mtlA NC_012121.1 1674783 1676330 D (P28008) PTS system mannitol-specific IIBC component (EIIBC-Mtl) (Mannitol-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Mtl),InterPro: PTS system mannitol-specific enzyme IIC; Hypothetical protein; PTS system, mannitol-specific IIBC component 1674783..1676330 Staphylococcus carnosus subsp. carnosus TM300 7551635 YP_002634750.1 CDS Sca_1659 NC_012121.1 1676367 1678400 D similar to transcription antiterminator BglG family ,(P46321) Probable licABCH operon regulator,InterPro: Transcriptional antiterminator bglG; Hypothetical protein; hypothetical protein 1676367..1678400 Staphylococcus carnosus subsp. carnosus TM300 7551814 YP_002634751.1 CDS mtlF NC_012121.1 1678407 1678841 D (P17875) PTS system mannitol-specific IIA component (EIIA-Mtl) (Mannitol-permease IIA component) (Phosphotransferase enzyme II A component) (EC 2.7.1.69) (EIII-Mtl),InterPro: Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Hypothetical protein; PTS system, mannitol-specific IIA component 1678407..1678841 Staphylococcus carnosus subsp. carnosus TM300 7550753 YP_002634752.1 CDS mtlD NC_012121.1 1678841 1679944 D (Q99SA1) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17),InterPro: Mannitol dehydrogenase; Hypothetical protein; mannitol-1-phosphate 5-dehydrogenase 1678841..1679944 Staphylococcus carnosus subsp. carnosus TM300 7551816 YP_002634753.1 CDS Sca_1662 NC_012121.1 1680054 1680725 D similar to MgtC/SapB family,(P26606) Hypothetical protein yhiD,InterPro: MgtC/SapB transporter; Hypothetical protein; hypothetical protein 1680054..1680725 Staphylococcus carnosus subsp. carnosus TM300 7551815 YP_002634754.1 CDS glmM NC_012121.1 1680775 1682130 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1680775..1682130) Staphylococcus carnosus subsp. carnosus TM300 7550754 YP_002634755.1 CDS Sca_1664 NC_012121.1 1682160 1683092 R Hypothetical protein; hypothetical protein complement(1682160..1683092) Staphylococcus carnosus subsp. carnosus TM300 7551634 YP_002634756.1 CDS Sca_1665 NC_012121.1 1683094 1683900 R (P75528) Hypothetical protein MG105 homolog (K04_orf202),InterPro: Protein of unknown function DUF147; Hypothetical protein; hypothetical protein complement(1683094..1683900) Staphylococcus carnosus subsp. carnosus TM300 7550755 YP_002634757.1 CDS Sca_1666 NC_012121.1 1690035 1691102 R similar to ATP-binding Mrp-like protein ,(P50863) Mrp protein homolog,InterPro: Mrp family; Hypothetical protein; hypothetical protein complement(1690035..1691102) Staphylococcus carnosus subsp. carnosus TM300 7551347 YP_002634758.1 CDS Sca_1667 NC_012121.1 1691270 1692718 R similar to multidrug resistance protein,(P54585) Hypothetical transport protein yhcA,InterPro: Major facilitator superfamily; Hypothetical protein; hypothetical protein complement(1691270..1692718) Staphylococcus carnosus subsp. carnosus TM300 7550757 YP_002634759.1 CDS Sca_1668 NC_012121.1 1692798 1693265 R (Q9PPI9) DNA polymerase III alpha subunit (EC 2.7.7.7); Hypothetical protein; hypothetical protein complement(1692798..1693265) Staphylococcus carnosus subsp. carnosus TM300 7550758 YP_002634760.1 CDS Sca_1669 NC_012121.1 1693367 1694704 R similar to multidrug transporter,(P44927) Multidrug resistance protein B homolog,InterPro: General substrate transporter; Hypothetical protein; hypothetical protein complement(1693367..1694704) Staphylococcus carnosus subsp. carnosus TM300 7550759 YP_002634761.1 CDS Sca_1670 NC_012121.1 1694822 1695505 R (P54176) Hemolysin III (HLY-III),InterPro: Hly-III related proteins; Hypothetical protein; putative hemolysin III complement(1694822..1695505) Staphylococcus carnosus subsp. carnosus TM300 7550760 YP_002634762.1 CDS Sca_1671 NC_012121.1 1695526 1696719 R similar to UTP--glucose-1-phosphate uridylyltransferase,(Q16222) UDP-N-acetylhexosamine pyrophosphorylase (Antigen X) (AGX) (Sperm-associated antigen 2) [Includes: UDP-N-acetylgalactosamine pyrophosphorylase (EC 2.7.7.-) (AGX-1); UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (AGX-2)],InterPro: UTP--glucose-1-phosphate uridylyltransferase; Hypothetical protein; hypothetical protein complement(1695526..1696719) Staphylococcus carnosus subsp. carnosus TM300 7550761 YP_002634763.1 CDS Sca_1672 NC_012121.1 1696924 1697439 R (O32205) Hypothetical protein yvsG precursor,InterPro: Predicted membrane-bound metal-dependent hydrolase; Hypothetical protein; hypothetical protein complement(1696924..1697439) Staphylococcus carnosus subsp. carnosus TM300 7550762 YP_002634764.1 CDS Sca_1673 NC_012121.1 1697629 1697886 D (Q9PQK6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS); Hypothetical protein; hypothetical protein 1697629..1697886 Staphylococcus carnosus subsp. carnosus TM300 7550763 YP_002634765.1 CDS Sca_1674 NC_012121.1 1697940 1698089 R Hypothetical protein; hypothetical protein complement(1697940..1698089) Staphylococcus carnosus subsp. carnosus TM300 7550764 YP_002634766.1 CDS Sca_1675 NC_012121.1 1698080 1698913 R weak similarity to low temperature requirement A protein(O33683) Hypothetical protein RA0937; Hypothetical protein; hypothetical protein complement(1698080..1698913) Staphylococcus carnosus subsp. carnosus TM300 7550765 YP_002634767.1 CDS Sca_1676 NC_012121.1 1699082 1699426 D iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1699082..1699426 Staphylococcus carnosus subsp. carnosus TM300 7550766 YP_002634768.1 CDS Sca_1677 NC_012121.1 1699474 1700844 R (P30267) Hypothetical 50.9 kDa protein in katA 3region (ORF A); Hypothetical protein; hypothetical protein complement(1699474..1700844) Staphylococcus carnosus subsp. carnosus TM300 7550767 YP_002634769.1 CDS Sca_1678 NC_012121.1 1701104 1702066 R (P15029) Iron(III) dicitrate transport system permease protein fecD,InterPro: FecCD transport family; Hypothetical protein; putative FecCD transport family protein complement(1701104..1702066) Staphylococcus carnosus subsp. carnosus TM300 7550768 YP_002634770.1 CDS Sca_1679 NC_012121.1 1702063 1703094 R (P49936) Ferrichrome transport system permease protein fhuB,InterPro: FecCD transport family; Hypothetical protein; putative FecCD transport family protein complement(1702063..1703094) Staphylococcus carnosus subsp. carnosus TM300 7550769 YP_002634771.1 CDS fecB NC_012121.1 1703109 1704110 R similar to Iron(III) dicitrate-binding periplasmic protein [Precursor],(E. coli),(P15028) Iron(III) dicitrate-binding periplasmic protein precursor,InterPro: Periplasmic binding protein; Hypothetical protein; putative ferrichrome ABC transporter (binding protein) complement(1703109..1704110) Staphylococcus carnosus subsp. carnosus TM300 7550770 YP_002634772.1 CDS Sca_1681 NC_012121.1 1704388 1705458 R (Q8R860) Alanine racemase 2 (EC 5.1.1.1),InterPro: Protein of unknown function UPF0001; Hypothetical protein; hypothetical protein complement(1704388..1705458) Staphylococcus carnosus subsp. carnosus TM300 7551568 YP_002634773.1 CDS Sca_1682 NC_012121.1 1705461 1707218 R (Q9Z3R0) Rhizobactin siderophore biosynthesis protein rhbC,InterPro: IucA/IucC; Hypothetical protein; hypothetical protein complement(1705461..1707218) Staphylococcus carnosus subsp. carnosus TM300 7550771 YP_002634774.1 CDS Sca_1683 NC_012121.1 1707215 1708390 R similar to transporter,(P21191) Quinolone resistance protein norA; Hypothetical protein; hypothetical protein complement(1707215..1708390) Staphylococcus carnosus subsp. carnosus TM300 7550772 YP_002634775.1 CDS Sca_1684 NC_012121.1 1708497 1710467 D (P55706) Hypothetical 71.0 kDa protein y4XN,InterPro: IucA/IucC; Hypothetical protein; hypothetical protein 1708497..1710467 Staphylococcus carnosus subsp. carnosus TM300 7550773 YP_002634776.1 CDS Sca_1685 NC_012121.1 1710604 1711101 R (Q53485) Alkaline shock protein,InterPro: Protein of unknown function DUF322; Hypothetical protein; putative alkaline shock protein complement(1710604..1711101) Staphylococcus carnosus subsp. carnosus TM300 7550774 YP_002634777.1 CDS Sca_1686 NC_012121.1 1711165 1711401 R Hypothetical protein; hypothetical protein complement(1711165..1711401) Staphylococcus carnosus subsp. carnosus TM300 7550775 YP_002634778.1 CDS Sca_1687 NC_012121.1 1711413 1711952 R Hypothetical protein; hypothetical protein complement(1711413..1711952) Staphylococcus carnosus subsp. carnosus TM300 7550776 YP_002634779.1 CDS opuD2 NC_012121.1 1712118 1713662 R (P54417) Glycine betaine transporter opuD,InterPro: BCCT transporter; Hypothetical protein; glycine betaine transporter opuD complement(1712118..1713662) Staphylococcus carnosus subsp. carnosus TM300 7550777 YP_002634780.1 CDS Sca_1689 NC_012121.1 1713828 1714841 R Putative NADP-dependent oxidoreductase,(Q8CRJ7) Zinc-type alcohol dehydrogenase-like protein SE1777,InterPro: Zinc-containing alcohol dehydrogenase superfamily; Hypothetical protein; hypothetical protein complement(1713828..1714841) Staphylococcus carnosus subsp. carnosus TM300 7551896 YP_002634781.1 CDS Sca_1690 NC_012121.1 1714854 1715870 R (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-),InterPro: Zinc-containing alcohol dehydrogenase superfamily; Hypothetical protein; putative zinc-binding dehydrogenase complement(1714854..1715870) Staphylococcus carnosus subsp. carnosus TM300 7550778 YP_002634782.1 CDS Sca_1691 NC_012121.1 1715943 1716818 R (P15801) DNA polymerase gamma (EC 2.7.7.7) (Mitochondrial DNA polymerase catalytic subunit); Hypothetical protein; hypothetical protein complement(1715943..1716818) Staphylococcus carnosus subsp. carnosus TM300 7550779 YP_002634783.1 CDS Sca_1692 NC_012121.1 1716952 1717959 R (Q39173) Probable NADP-dependent oxidoreductase P2 (EC 1.3.1.74),InterPro: Zinc-containing alcohol dehydrogenase superfamily; Conserved hypothetical protein; putative NADP-dependent oxidoreductase complement(1716952..1717959) Staphylococcus carnosus subsp. carnosus TM300 7550780 YP_002634784.1 CDS Sca_1693 NC_012121.1 1718147 1718902 R (Q8CR12) Hypothetical UPF0085 protein SE2159,InterPro: Protein of unknown function DUF299; Hypothetical protein; hypothetical protein complement(1718147..1718902) Staphylococcus carnosus subsp. carnosus TM300 7550781 YP_002634785.1 CDS ppdK NC_012121.1 1718952 1721594 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(1718952..1721594) Staphylococcus carnosus subsp. carnosus TM300 7550782 YP_002634786.1 CDS Sca_1695 NC_012121.1 1721814 1722335 D (P09278) Large tegument protein; Hypothetical protein; hypothetical protein 1721814..1722335 Staphylococcus carnosus subsp. carnosus TM300 7551953 YP_002634787.1 CDS Sca_1696 NC_012121.1 1722509 1722988 D (P37187) PTS system galactitol-specific IIA component (EIIA-Gat) (Galacticol-permease IIA component) (Phosphotransferase enzyme II A component) (EC 2.7.1.69),InterPro: Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Hypothetical protein; hypothetical protein 1722509..1722988 Staphylococcus carnosus subsp. carnosus TM300 7550783 YP_002634788.1 CDS Sca_1697 NC_012121.1 1723044 1724261 R (Q92F90) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS),InterPro: PAS domain; Hypothetical protein; hypothetical protein complement(1723044..1724261) Staphylococcus carnosus subsp. carnosus TM300 7550784 YP_002634789.1 CDS Sca_1698 NC_012121.1 1724348 1724887 R similar to,(P39701) Alpha-ribazole phosphatase (EC 3.1.3.73) (Alpha-ribazole-5-phosphate phosphatase),InterPro: Phosphoglycerate/bisphosphoglycerate mutase; Hypothetical protein; hypothetical protein complement(1724348..1724887) Staphylococcus carnosus subsp. carnosus TM300 7550785 YP_002634790.1 CDS Sca_1699 NC_012121.1 1725152 1725694 D (P32400) N-carbamoylsarcosine amidase (EC 3.5.1.59) (N-carbamoylsarcosine amidohydrolase) (CSHASE),InterPro: Isochorismatase hydrolase family; Conserved hypothetical protein; hypothetical protein 1725152..1725694 Staphylococcus carnosus subsp. carnosus TM300 7550786 YP_002634791.1 CDS Sca_1700 NC_012121.1 1725752 1727080 R similar to multidrug resistance integral membrane efflux protein EmrB,(P54585) Hypothetical transport protein yhcA,InterPro: Drug resistance transporter EmrB/QacA subfamily; Hypothetical protein; hypothetical protein complement(1725752..1727080) Staphylococcus carnosus subsp. carnosus TM300 7550787 YP_002634792.1 CDS Sca_1701 NC_012121.1 1727282 1727749 R (P54182) Putative HTH-type transcriptional regulator ypoP,InterPro: Bacterial regulatory protein MarR family; Conserved hypothetical protein; putative MarR family transcriptional regulator complement(1727282..1727749) Staphylococcus carnosus subsp. carnosus TM300 7550788 YP_002634793.1 CDS rpsI NC_012121.1 1727849 1728241 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1727849..1728241) Staphylococcus carnosus subsp. carnosus TM300 7550789 YP_002634794.1 CDS rplM NC_012121.1 1728261 1728698 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1728261..1728698) Staphylococcus carnosus subsp. carnosus TM300 7552082 YP_002634795.1 CDS truA NC_012121.1 1728913 1729716 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1728913..1729716) Staphylococcus carnosus subsp. carnosus TM300 7552050 YP_002634796.1 CDS Sca_1705 NC_012121.1 1729721 1730497 R (Q58966) Hypothetical protein MJ1571,InterPro: Cobalt transport protein; Hypothetical protein; hypothetical protein complement(1729721..1730497) Staphylococcus carnosus subsp. carnosus TM300 7552268 YP_002634797.1 CDS cbiO NC_012121.1 1730517 1731380 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1730517..1731380) Staphylococcus carnosus subsp. carnosus TM300 7550790 YP_002634798.1 CDS cbiO NC_012121.1 1731377 1732183 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1731377..1732183) Staphylococcus carnosus subsp. carnosus TM300 7550791 YP_002634799.1 CDS rplQ NC_012121.1 1732542 1732910 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1732542..1732910) Staphylococcus carnosus subsp. carnosus TM300 7550792 YP_002634800.1 CDS rpoA NC_012121.1 1732933 1733877 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1732933..1733877) Staphylococcus carnosus subsp. carnosus TM300 7552054 YP_002634801.1 CDS rpsK NC_012121.1 1733963 1734352 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1733963..1734352) Staphylococcus carnosus subsp. carnosus TM300 7552072 YP_002634802.1 CDS rpsM NC_012121.1 1734376 1734741 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1734376..1734741) Staphylococcus carnosus subsp. carnosus TM300 7552084 YP_002634803.1 CDS rpmJ NC_012121.1 1734764 1734877 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1734764..1734877) Staphylococcus carnosus subsp. carnosus TM300 7552086 YP_002634804.1 CDS infA NC_012121.1 1734911 1735129 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1734911..1735129) Staphylococcus carnosus subsp. carnosus TM300 7552071 YP_002634805.1 CDS adk NC_012121.1 1735320 1735970 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1735320..1735970) Staphylococcus carnosus subsp. carnosus TM300 7551720 YP_002634806.1 CDS secY NC_012121.1 1735987 1737279 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1735987..1737279) Staphylococcus carnosus subsp. carnosus TM300 7551374 YP_002634807.1 CDS rplO NC_012121.1 1737279 1737719 R late assembly protein; 50S ribosomal protein L15 complement(1737279..1737719) Staphylococcus carnosus subsp. carnosus TM300 7552124 YP_002634808.1 CDS rpmD NC_012121.1 1737745 1737933 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1737745..1737933) Staphylococcus carnosus subsp. carnosus TM300 7552052 YP_002634809.1 CDS rpsE NC_012121.1 1737950 1738450 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1737950..1738450) Staphylococcus carnosus subsp. carnosus TM300 7552065 YP_002634810.1 CDS rplR NC_012121.1 1738472 1738834 R (P09415) 50S ribosomal protein L18,InterPro: Ribosomal protein L18P/L5E; Conserved hypothetical protein; 50S ribosomal protein L18 complement(1738472..1738834) Staphylococcus carnosus subsp. carnosus TM300 7552078 YP_002634811.1 CDS rplF NC_012121.1 1738866 1739402 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1738866..1739402) Staphylococcus carnosus subsp. carnosus TM300 7552055 YP_002634812.1 CDS rpsH NC_012121.1 1739428 1739826 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1739428..1739826) Staphylococcus carnosus subsp. carnosus TM300 7552045 YP_002634813.1 CDS rpsN NC_012121.1 1739859 1740044 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1739859..1740044) Staphylococcus carnosus subsp. carnosus TM300 7552081 YP_002634814.1 CDS rplE NC_012121.1 1740070 1740609 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1740070..1740609) Staphylococcus carnosus subsp. carnosus TM300 7552088 YP_002634815.1 CDS rplX NC_012121.1 1740635 1740952 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1740635..1740952) Staphylococcus carnosus subsp. carnosus TM300 7552044 YP_002634816.1 CDS rplN NC_012121.1 1740985 1741353 R (P06381) Chloroplast 50S ribosomal protein L14,InterPro: Ribosomal protein L14b/L23e,Ribosomal protein L14 bacterial and organelle form; Conserved hypothetical protein; 50S ribosomal protein L14 complement(1740985..1741353) Staphylococcus carnosus subsp. carnosus TM300 7552060 YP_002634817.1 CDS rpsQ NC_012121.1 1741383 1741646 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1741383..1741646) Staphylococcus carnosus subsp. carnosus TM300 7552051 YP_002634818.1 CDS rpmC NC_012121.1 1741672 1741881 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1741672..1741881) Staphylococcus carnosus subsp. carnosus TM300 7552091 YP_002634819.1 CDS rplP NC_012121.1 1741871 1742305 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1741871..1742305) Staphylococcus carnosus subsp. carnosus TM300 7552064 YP_002634820.1 CDS rpsC NC_012121.1 1742308 1742961 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1742308..1742961) Staphylococcus carnosus subsp. carnosus TM300 7552053 YP_002634821.1 CDS rplV NC_012121.1 1742985 1743338 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1742985..1743338) Staphylococcus carnosus subsp. carnosus TM300 7552076 YP_002634822.1 CDS rpsS NC_012121.1 1743371 1743649 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1743371..1743649) Staphylococcus carnosus subsp. carnosus TM300 7552058 YP_002634823.1 CDS rplB NC_012121.1 1743714 1744547 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1743714..1744547) Staphylococcus carnosus subsp. carnosus TM300 7552093 YP_002634824.1 CDS rplW NC_012121.1 1744585 1744860 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1744585..1744860) Staphylococcus carnosus subsp. carnosus TM300 7552041 YP_002634825.1 CDS rplD NC_012121.1 1744860 1745483 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1744860..1745483) Staphylococcus carnosus subsp. carnosus TM300 7552059 YP_002634826.1 CDS rplC NC_012121.1 1745512 1746174 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1745512..1746174) Staphylococcus carnosus subsp. carnosus TM300 7552043 YP_002634827.1 CDS rpsJ NC_012121.1 1746202 1746510 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1746202..1746510) Staphylococcus carnosus subsp. carnosus TM300 7552042 YP_002634828.1 CDS Sca_1737 NC_012121.1 1746850 1747236 D (Q07429) Ammonium transporter nrgA (Membrane protein nrgA) (Protein amtB); Hypothetical protein; hypothetical protein 1746850..1747236 Staphylococcus carnosus subsp. carnosus TM300 7552083 YP_002634829.1 CDS Sca_1738 NC_012121.1 1747315 1747740 R similar to acetyltransferase, GNAT family,(P16691) PhnO protein,InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein complement(1747315..1747740) Staphylococcus carnosus subsp. carnosus TM300 7550793 YP_002634830.1 CDS Sca_1739 NC_012121.1 1747829 1749163 R (P31440) Hypothetical protein yicO,InterPro: Xanthine/uracil/vitamin C permease family; Hypothetical protein; hypothetical protein complement(1747829..1749163) Staphylococcus carnosus subsp. carnosus TM300 7550794 YP_002634831.1 CDS topB NC_012121.1 1749375 1751504 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1749375..1751504) Staphylococcus carnosus subsp. carnosus TM300 7550795 YP_002634832.1 CDS Sca_1741 NC_012121.1 1751652 1752515 D InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein 1751652..1752515 Staphylococcus carnosus subsp. carnosus TM300 7552195 YP_002634833.1 CDS glcU NC_012121.1 1752640 1753494 D (O07881) Glucose uptake protein glcU,InterPro: RhaT l-rhamnose-proton symport; Hypothetical protein; glucose uptake protein 1752640..1753494 Staphylococcus carnosus subsp. carnosus TM300 7550796 YP_002634834.1 CDS gdh NC_012121.1 1753537 1754328 D (P39483) Glucose 1-dehydrogenase II (EC 1.1.1.47) (GLCDH-II),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative glucose 1-dehydrogenase 1753537..1754328 Staphylococcus carnosus subsp. carnosus TM300 7551633 YP_002634835.1 CDS Sca_1744 NC_012121.1 1754430 1755338 R (P76519) Hypothetical protein yfdV,InterPro: Auxin Efflux Carrier; Conserved hypothetical protein; hypothetical protein complement(1754430..1755338) Staphylococcus carnosus subsp. carnosus TM300 7551621 YP_002634836.1 CDS Sca_1745 NC_012121.1 1755461 1755631 D (Q63665) Upstream stimulatory factor 2 (Upstream transcription factor 2) (Major late transcription factor 2) (Fragment); Hypothetical protein; hypothetical protein 1755461..1755631 Staphylococcus carnosus subsp. carnosus TM300 7550797 YP_002634837.1 CDS Sca_1746 NC_012121.1 1755696 1756013 D Hypothetical protein; hypothetical protein 1755696..1756013 Staphylococcus carnosus subsp. carnosus TM300 7550798 YP_002634838.1 CDS Sca_1747 NC_012121.1 1756053 1757216 R Hypothetical protein; hypothetical protein complement(1756053..1757216) Staphylococcus carnosus subsp. carnosus TM300 7550799 YP_002634839.1 CDS Sca_1748 NC_012121.1 1757236 1758414 R Hypothetical protein; hypothetical protein complement(1757236..1758414) Staphylococcus carnosus subsp. carnosus TM300 7550800 YP_002634840.1 CDS Sca_1749 NC_012121.1 1758642 1761800 R hypothetical protein, similar to acriflavin resistance protein,putative transporter (AcrB/AcrD/AcrF family protein),(P25197) Nodulation protein nolG precursor,InterPro: Acriflavin resistance protein; Hypothetical protein; hypothetical protein complement(1758642..1761800) Staphylococcus carnosus subsp. carnosus TM300 7550801 YP_002634841.1 CDS fmhB NC_012121.1 1761956 1763206 R (P14305) Protein femB,InterPro: Methicillin resistance protein; Hypothetical protein; putative FmhB protein complement(1761956..1763206) Staphylococcus carnosus subsp. carnosus TM300 7550802 YP_002634842.1 CDS Sca_1751 NC_012121.1 1763319 1763579 D Hypothetical protein; hypothetical protein 1763319..1763579 Staphylococcus carnosus subsp. carnosus TM300 7551582 YP_002634843.1 CDS Sca_1752 NC_012121.1 1763576 1764331 R (Q14203) Dynactin 1 (150 kDa dynein-associated polypeptide) (DP-150) (DAP-150) (p150-glued) (p135); Hypothetical protein; hypothetical protein complement(1763576..1764331) Staphylococcus carnosus subsp. carnosus TM300 7550803 YP_002634844.1 CDS Sca_1753 NC_012121.1 1764599 1765015 D (P62087) Putative HTH-type transcriptional regulator SA2060,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; hypothetical protein 1764599..1765015 Staphylococcus carnosus subsp. carnosus TM300 7550804 YP_002634845.1 CDS Sca_1754 NC_012121.1 1765029 1766225 D similar to transporter proteins,(Q8Z4Z9) Hypothetical UPF0226 protein yfcJ,InterPro: Major facilitator superfamily; Hypothetical protein; hypothetical protein 1765029..1766225 Staphylococcus carnosus subsp. carnosus TM300 7550805 YP_002634846.1 CDS Sca_1755 NC_012121.1 1766639 1766980 D (O07127) Hypothetical 16.5 kDa protein in ptsI 3region (ORFY); Hypothetical protein; hypothetical protein 1766639..1766980 Staphylococcus carnosus subsp. carnosus TM300 7550806 YP_002634847.1 CDS moaA NC_012121.1 1767083 1768105 R Hypothetical protein; Molybdenum cofactor biosynthesis protein A complement(1767083..1768105) Staphylococcus carnosus subsp. carnosus TM300 7550807 YP_002634848.1 CDS mobA NC_012121.1 1768164 1768757 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1768164..1768757) Staphylococcus carnosus subsp. carnosus TM300 7551792 YP_002634849.1 CDS moaD NC_012121.1 1768762 1768995 R Hypothetical protein; MoaD complement(1768762..1768995) Staphylococcus carnosus subsp. carnosus TM300 7551797 YP_002634850.1 CDS moaE NC_012121.1 1768995 1769447 R Hypothetical protein; MoaE complement(1768995..1769447) Staphylococcus carnosus subsp. carnosus TM300 7551795 YP_002634851.1 CDS mobB NC_012121.1 1769444 1769926 R Hypothetical protein; MobB complement(1769444..1769926) Staphylococcus carnosus subsp. carnosus TM300 7551796 YP_002634852.1 CDS moeA NC_012121.1 1769923 1771182 R Hypothetical protein; molybdopterin biosynthesis protein MoeA complement(1769923..1771182) Staphylococcus carnosus subsp. carnosus TM300 7551798 YP_002634853.1 CDS moaC NC_012121.1 1771247 1771732 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1771247..1771732 Staphylococcus carnosus subsp. carnosus TM300 7551803 YP_002634854.1 CDS moaB NC_012121.1 1771916 1772428 R Conserved hypothetical protein; Molybdenum cofactor biosynthesis protein B complement(1771916..1772428) Staphylococcus carnosus subsp. carnosus TM300 7551794 YP_002634855.1 CDS moeB NC_012121.1 1772460 1773461 R (P38820) Hypothetical 49.4 kDa protein in CDC12-ORC6 intergenic region,InterPro: UBA/THIF-type NAD/FAD binding fold; Conserved hypothetical protein; putative molybdopterin biosynthesis protein moeB complement(1772460..1773461) Staphylococcus carnosus subsp. carnosus TM300 7551793 YP_002634856.1 CDS modC NC_012121.1 1773613 1774221 R ATP-binding protein of the molybdate-specific ABC,transporter ModABC; Conserved hypothetical protein; molybdenum transport ATP-binding protein ModC complement(1773613..1774221) Staphylococcus carnosus subsp. carnosus TM300 7551804 YP_002634857.1 CDS modB NC_012121.1 1774222 1774893 R integral membrane-spanning protein of the,molybdate-specific ABC transporter ModABC; Conserved hypothetical protein; molybdenum transport system permease ModB complement(1774222..1774893) Staphylococcus carnosus subsp. carnosus TM300 7551802 YP_002634858.1 CDS modA NC_012121.1 1774905 1775690 R molybdate-binding lipoprotein of the,molybdate-specific ABC transporter ModABC,(P37329) Molybdate-binding periplasmic protein precursor,InterPro: Bacterial extracellular solute-binding protein family 1; Conserved hypothetical protein; molybdate-binding protein ModA complement(1774905..1775690) Staphylococcus carnosus subsp. carnosus TM300 7551801 YP_002634859.1 CDS galT NC_012121.1 1775850 1777346 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(1775850..1777346) Staphylococcus carnosus subsp. carnosus TM300 7551800 YP_002634860.1 CDS galE NC_012121.1 1777364 1778353 R UDP-glucose-4-epimerase,(Q9KDV3) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase),InterPro: UDP-glucose 4-epimerase; Conserved hypothetical protein; UDP-glucose-4-epimerase GalE complement(1777364..1778353) Staphylococcus carnosus subsp. carnosus TM300 7551608 YP_002634861.1 CDS galK NC_012121.1 1778374 1779540 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(1778374..1779540) Staphylococcus carnosus subsp. carnosus TM300 7551605 YP_002634862.1 CDS galR NC_012121.1 1779630 1780628 R Galactose operon repressor; Conserved hypothetical protein; Galactose operon repressor GalR complement(1779630..1780628) Staphylococcus carnosus subsp. carnosus TM300 7551606 YP_002634863.1 CDS Sca_1773 NC_012121.1 1780774 1781595 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 1780774..1781595 Staphylococcus carnosus subsp. carnosus TM300 7551607 YP_002634864.1 CDS Sca_1774 NC_012121.1 1781622 1782377 R similar to acetyltransferase (GNAT) family protein,(P37504) Hypothetical protein yyaT,InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein complement(1781622..1782377) Staphylococcus carnosus subsp. carnosus TM300 7550808 YP_002634865.1 CDS Sca_1775 NC_012121.1 1782405 1782956 R similar to biotin biosynthesis protein,(P22819) Protein bioY,InterPro: BioY protein; Conserved hypothetical protein; hypothetical protein complement(1782405..1782956) Staphylococcus carnosus subsp. carnosus TM300 7550809 YP_002634866.1 CDS Sca_1776 NC_012121.1 1783055 1783999 R (P33022) Hypothetical protein yeiK,InterPro: Inosine/uridine-preferring nucleoside hydrolase; Conserved hypothetical protein; putative inosine-uridine preferring nucleoside hydrolase complement(1783055..1783999) Staphylococcus carnosus subsp. carnosus TM300 7550810 YP_002634867.1 CDS Sca_1777 NC_012121.1 1784221 1785369 D similar to butyryl-CoA dehydrogenase,(P52042) Acyl-CoA dehydrogenase short-chain specific (EC 1.3.99.2) (SCAD) (Butyryl-CoA dehydrogenase),InterPro: Acyl-CoA dehydrogenase C-terminal; Conserved hypothetical protein; hypothetical protein 1784221..1785369 Staphylococcus carnosus subsp. carnosus TM300 7550811 YP_002634868.1 CDS Sca_1778 NC_012121.1 1785598 1786512 D similar to ferrichrome ABC transporter fhuD precursor,(P37580) Ferrichrome-binding protein precursor,InterPro: Periplasmic binding protein; Conserved hypothetical protein; putative ferrichrome binding protein 1785598..1786512 Staphylococcus carnosus subsp. carnosus TM300 7550812 YP_002634869.1 CDS Sca_1779 NC_012121.1 1786581 1787522 R similar to urea transporter,(Q13336) Urea transporter erythrocyte,InterPro: Urea transporter; Conserved hypothetical protein; hypothetical protein complement(1786581..1787522) Staphylococcus carnosus subsp. carnosus TM300 7550813 YP_002634870.1 CDS ureA NC_012121.1 1787827 1788129 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 1787827..1788129 Staphylococcus carnosus subsp. carnosus TM300 7550814 YP_002634871.1 CDS ureB NC_012121.1 1788146 1788559 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 1788146..1788559 Staphylococcus carnosus subsp. carnosus TM300 7552283 YP_002634872.1 CDS ureC NC_012121.1 1788556 1790271 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1788556..1790271 Staphylococcus carnosus subsp. carnosus TM300 7552284 YP_002634873.1 CDS ureE NC_012121.1 1790287 1790739 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 1790287..1790739 Staphylococcus carnosus subsp. carnosus TM300 7552285 YP_002634874.1 CDS ureF NC_012121.1 1790732 1791421 D (Q07402) Urease accessory protein ureF,InterPro: Urease accessory protein UreF; Conserved hypothetical protein; urease accessory protein UreF 1790732..1791421 Staphylococcus carnosus subsp. carnosus TM300 7552287 YP_002634875.1 CDS ureG NC_012121.1 1791434 1792048 D (P42877) Urease accessory protein ureG,InterPro: Urease accessory protein UreG; Conserved hypothetical protein; urease accessory protein UreG 1791434..1792048 Staphylococcus carnosus subsp. carnosus TM300 7552288 YP_002634876.1 CDS ureD NC_012121.1 1792048 1792887 D (Q07400) Urease accessory protein ureD,InterPro: Urease accessory protein UreD; Conserved hypothetical protein; urease accessory protein UreD 1792048..1792887 Staphylococcus carnosus subsp. carnosus TM300 7552289 YP_002634877.1 CDS sarR NC_012121.1 1793051 1793407 R (O83536) ATP-dependent protease La (EC 3.4.21.53); Hypothetical protein; putative accessory regulator A complement(1793051..1793407) Staphylococcus carnosus subsp. carnosus TM300 7552286 YP_002634878.1 CDS Sca_1788 NC_012121.1 1793741 1794106 R Hypothetical protein; hypothetical protein complement(1793741..1794106) Staphylococcus carnosus subsp. carnosus TM300 7552105 YP_002634879.1 CDS Sca_1789 NC_012121.1 1794125 1795174 R (Q53218) Hypothetical 39.2 kDa protein y4vJ,InterPro: Bacterial luciferase,Note: Sequence published by Krismer,B., Montenbruck,I. and Goetz,F.(: Direct Submission; Submitted (02-APR-1997) Institut fuer Mikrobielle Genetik, Universitaet Tuebingen,Waldhaeuserstr. 70/8, Tuebingen 72076, Germany) is N-terminally prolonged by 48 aa.; Hypothetical protein; N5, N10-methylenetetrahydromethanopterin reductase complement(1794125..1795174) Staphylococcus carnosus subsp. carnosus TM300 7550815 YP_002634880.1 CDS sceB NC_012121.1 1795820 1796611 D major secreted protein; Hypothetical protein; SceB protein 1795820..1796611 Staphylococcus carnosus subsp. carnosus TM300 7550816 YP_002634881.1 CDS Sca_1791 NC_012121.1 1796785 1797288 R former orf4; Hypothetical protein; putative transmembrane protein complement(1796785..1797288) Staphylococcus carnosus subsp. carnosus TM300 7552108 YP_002634882.1 CDS Sca_1792 NC_012121.1 1797607 1798986 R (P27611) Na(+)/H(+) antiporter (Sodium/proton antiporter) (Sodium/hydrogen antiporter),InterPro: Na+/H+ antiporter NhaC; Hypothetical protein; putative Na+/H+ antiporter complement(1797607..1798986) Staphylococcus carnosus subsp. carnosus TM300 7550817 YP_002634883.1 CDS Sca_1793 NC_012121.1 1799008 1800078 R (P00385) OCS protein [Includes: D-lysopine dehydrogenase (EC 1.5.1.16) (Lysopine synthase); D-octopine dehydrogenase (EC 1.5.1.11) (Octopine synthase)],InterPro: NAD/NADP octopine/nopaline dehydrogenase; Conserved hypothetical protein; putative D-octopine dehydrogenase complement(1799008..1800078) Staphylococcus carnosus subsp. carnosus TM300 7550818 YP_002634884.1 CDS Sca_1794 NC_012121.1 1800520 1800900 D (Q58838) Hypothetical UPF0132 protein MJ1443; Hypothetical protein; hypothetical protein 1800520..1800900 Staphylococcus carnosus subsp. carnosus TM300 7550819 YP_002634885.1 CDS Sca_1795 NC_012121.1 1801024 1801356 D (P49856) Hypothetical protein ykkC,InterPro: Small multidrug resistance protein; Hypothetical protein; hypothetical protein 1801024..1801356 Staphylococcus carnosus subsp. carnosus TM300 7550820 YP_002634886.1 CDS Sca_1796 NC_012121.1 1801356 1801670 D (P49857) Hypothetical protein ykkD,InterPro: Small multidrug resistance protein; High confidence in function and specificity; hypothetical protein 1801356..1801670 Staphylococcus carnosus subsp. carnosus TM300 7550821 YP_002634887.1 CDS Sca_1797 NC_012121.1 1801752 1802723 D (Q8U3Y2) Glyoxylate reductase (EC 1.1.1.26) (Glycolate reductase),InterPro: D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain; Hypothetical protein; putative glycerate dehydrogenase 1801752..1802723 Staphylococcus carnosus subsp. carnosus TM300 7550822 YP_002634888.1 CDS Sca_1798 NC_012121.1 1802788 1803912 R similar to monooxygenase,(P93236) Zeaxanthin epoxidase chloroplast precursor (EC 1.14.-.-),InterPro: Flavoprotein monooxygenase; Hypothetical protein; hypothetical protein complement(1802788..1803912) Staphylococcus carnosus subsp. carnosus TM300 7550823 YP_002634889.1 CDS Sca_1799 NC_012121.1 1804015 1804794 R similar to autolysin E,(P52081) Bifunctional autolysin precursor [Includes: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28); Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (EC 3.2.1.96)],InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Hypothetical protein; hypothetical protein complement(1804015..1804794) Staphylococcus carnosus subsp. carnosus TM300 7550824 YP_002634890.1 CDS Sca_1800 NC_012121.1 1804816 1805067 R Hypothetical protein; hypothetical protein complement(1804816..1805067) Staphylococcus carnosus subsp. carnosus TM300 7550825 YP_002634891.1 CDS Sca_1801 NC_012121.1 1805191 1805631 R (O05396) Hypothetical protein yrhD; Hypothetical protein; hypothetical protein complement(1805191..1805631) Staphylococcus carnosus subsp. carnosus TM300 7550826 YP_002634892.1 CDS Sca_1802 NC_012121.1 1805654 1808614 R similar to putative bifunctional protein (Staphylococcus aureus subsp. aureus MRSA252),(P61159) Formate dehydrogenase alpha chain (EC 1.2.1.2),InterPro: Formate dehydrogenase alpha subunit; Hypothetical protein; putative formate dehydrogenase complement(1805654..1808614) Staphylococcus carnosus subsp. carnosus TM300 7550827 YP_002634893.1 CDS Sca_1803 NC_012121.1 1808692 1808811 D Hypothetical protein; hypothetical protein 1808692..1808811 Staphylococcus carnosus subsp. carnosus TM300 7550828 YP_002634894.1 CDS Sca_1804 NC_012121.1 1809199 1809501 R Hypothetical protein; hypothetical protein complement(1809199..1809501) Staphylococcus carnosus subsp. carnosus TM300 7550829 YP_002634895.1 CDS Sca_1805 NC_012121.1 1809631 1810587 R similar to lyt divergon expression attenuator LytR,(Q81K33) Membrane-bound protein lytR,InterPro: Cell envelope-related transcriptional attenuator; Hypothetical protein; hypothetical protein complement(1809631..1810587) Staphylococcus carnosus subsp. carnosus TM300 7550830 YP_002634896.1 CDS Sca_1806 NC_012121.1 1810674 1811483 R (Q45499) Inositol-1-monophosphatase (EC 3.1.3.25) (IMPase) (Inositol-1-phosphatase) (I-1-Pase),InterPro: Inositol monophosphatase; Conserved hypothetical protein; hypothetical protein complement(1810674..1811483) Staphylococcus carnosus subsp. carnosus TM300 7550831 YP_002634897.1 CDS Sca_1807 NC_012121.1 1811882 1812580 D (P52598) Putative HTH-type transcriptional regulator ygbI,InterPro: Bacterial regulatory protein DeoR family; Hypothetical protein; hypothetical protein 1811882..1812580 Staphylococcus carnosus subsp. carnosus TM300 7550832 YP_002634898.1 CDS Sca_1808 NC_012121.1 1812643 1813359 R InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein complement(1812643..1813359) Staphylococcus carnosus subsp. carnosus TM300 7550833 YP_002634899.1 CDS Sca_1809 NC_012121.1 1813464 1813811 D Hypothetical protein; hypothetical protein 1813464..1813811 Staphylococcus carnosus subsp. carnosus TM300 7550834 YP_002634900.1 CDS Sca_1810 NC_012121.1 1814096 1814668 D (O68281) HTH-type transcriptional regulator hexR (Hex regulon repressor),InterPro: Helix-turn-helix protein RpiR,Similar to N-terminus of putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300683); Hypothetical protein; hypothetical protein 1814096..1814668 Staphylococcus carnosus subsp. carnosus TM300 7550835 YP_002634901.1 CDS Sca_1811 NC_012121.1 1814619 1814969 D Similar to C-terminal part of putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300683),(Q45581) Putative HTH-type transcriptional regulator ybbH; Hypothetical protein; hypothetical protein 1814619..1814969 Staphylococcus carnosus subsp. carnosus TM300 7550836 YP_002634902.1 CDS Sca_1812 NC_012121.1 1815015 1816406 R (P54425) Hypothetical transport protein ybxG,InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid transporter complement(1815015..1816406) Staphylococcus carnosus subsp. carnosus TM300 7550837 YP_002634903.1 CDS Sca_1813 NC_012121.1 1816464 1816562 R Hypothetical protein; hypothetical protein complement(1816464..1816562) Staphylococcus carnosus subsp. carnosus TM300 7550838 YP_002634904.1 CDS Sca_1814 NC_012121.1 1817123 1817944 D similar to formate/nitrite transporter,(P38750) Hypothetical 70.0 kDa protein in PRPS4-STE20 intergenic region,InterPro: Formate/nitrite transporter; Hypothetical protein; hypothetical protein 1817123..1817944 Staphylococcus carnosus subsp. carnosus TM300 7550839 YP_002634905.1 CDS Sca_1815 NC_012121.1 1818011 1818364 D (P41656) Hypothetical 19.8 kDa protein in P143-LEF5 intergenic region; Hypothetical protein; hypothetical protein 1818011..1818364 Staphylococcus carnosus subsp. carnosus TM300 7550840 YP_002634906.1 CDS Sca_1816 NC_012121.1 1818361 1818543 D Hypothetical protein; hypothetical protein 1818361..1818543 Staphylococcus carnosus subsp. carnosus TM300 7550841 YP_002634907.1 CDS Sca_1817 NC_012121.1 1818598 1818780 R Hypothetical protein; hypothetical protein complement(1818598..1818780) Staphylococcus carnosus subsp. carnosus TM300 7550842 YP_002634908.1 CDS Sca_1818 NC_012121.1 1818793 1819428 R similar to haloacid dehalogenase-like hydrolase,(P54607) Hypothetical protein yhcW,InterPro: Haloacid dehalogenase-like hydrolase; Hypothetical protein; hypothetical protein complement(1818793..1819428) Staphylococcus carnosus subsp. carnosus TM300 7550843 YP_002634909.1 CDS Sca_1819 NC_012121.1 1819647 1820183 D (Q9XDH6) DNA polymerase III alpha subunit (EC 2.7.7.7); Hypothetical protein; hypothetical protein 1819647..1820183 Staphylococcus carnosus subsp. carnosus TM300 7550844 YP_002634910.1 CDS glpT NC_012121.1 1820806 1822161 D (P08194) Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease),InterPro: Glycerol-3-phosphate transporter; Conserved hypothetical protein; glycerol-3-phosphate transporter 1820806..1822161 Staphylococcus carnosus subsp. carnosus TM300 7550845 YP_002634911.1 CDS Sca_1821 NC_012121.1 1822220 1822741 R (Q8VEE1) LIM and cysteine-rich domains protein,InterPro: Protein of unknown function DUF704; Hypothetical protein; hypothetical protein complement(1822220..1822741) Staphylococcus carnosus subsp. carnosus TM300 7551646 YP_002634912.1 CDS Sca_1822 NC_012121.1 1822900 1824306 R similar to Na+/H+ antiporter,(P54571) Malate-2H(+)/Na(+)-lactate antiporter,InterPro: Na+/H+ antiporter NhaC; Hypothetical protein; putative transport protein complement(1822900..1824306) Staphylococcus carnosus subsp. carnosus TM300 7550846 YP_002634913.1 CDS Sca_1823 NC_012121.1 1824477 1825088 R (O05220) Hypothetical protein ywrF; Hypothetical protein; hypothetical protein complement(1824477..1825088) Staphylococcus carnosus subsp. carnosus TM300 7550847 YP_002634914.1 CDS Sca_1824 NC_012121.1 1825269 1826150 R (P25887) Hypothetical oxidoreductase yghA (EC 1.-.-.-),InterPro: Short-chain dehydrogenase/reductase SDR; Conserved hypothetical protein; putative short chain dehydrogenase complement(1825269..1826150) Staphylococcus carnosus subsp. carnosus TM300 7550848 YP_002634915.1 CDS Sca_1825 NC_012121.1 1826220 1827335 R (P54955) Hypothetical protein yxeP,InterPro: Peptidase M20/M25/M40; Conserved hypothetical protein; putative amino acid amidohydrolase complement(1826220..1827335) Staphylococcus carnosus subsp. carnosus TM300 7550849 YP_002634916.1 CDS Sca_1826 NC_012121.1 1827313 1828506 R Hypothetical protein; putative sulfate permease complement(1827313..1828506) Staphylococcus carnosus subsp. carnosus TM300 7550850 YP_002634917.1 CDS hutI NC_012121.1 1828656 1829918 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(1828656..1829918) Staphylococcus carnosus subsp. carnosus TM300 7550851 YP_002634918.1 CDS hutU NC_012121.1 1829911 1831599 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(1829911..1831599) Staphylococcus carnosus subsp. carnosus TM300 7551710 YP_002634919.1 CDS Sca_1829 NC_012121.1 1831630 1832988 R (P30267) Hypothetical 50.9 kDa protein in katA 3region (ORF A); Hypothetical protein; hypothetical protein complement(1831630..1832988) Staphylococcus carnosus subsp. carnosus TM300 7551711 YP_002634920.1 CDS Sca_1830 NC_012121.1 1833560 1834438 D similar to transcriptional regulator LysR family protein,(P39592) Putative HTH-type transcriptional regulator ywbI,InterPro: LysR substrate binding domain; Hypothetical protein; putative transcriptional regulator 1833560..1834438 Staphylococcus carnosus subsp. carnosus TM300 7550852 YP_002634921.1 CDS Sca_1831 NC_012121.1 1834533 1835462 R catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase complement(1834533..1835462) Staphylococcus carnosus subsp. carnosus TM300 7550853 YP_002634922.1 CDS Sca_1832 NC_012121.1 1835859 1836935 D C terminal 298 AA similar to Staph epidermidis conserved protein; Hypothetical protein; hypothetical protein 1835859..1836935 Staphylococcus carnosus subsp. carnosus TM300 7550854 YP_002634923.1 CDS rpi NC_012121.1 1836993 1837676 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1836993..1837676) Staphylococcus carnosus subsp. carnosus TM300 7550855 YP_002634924.1 CDS Sca_1834 NC_012121.1 1837700 1838719 R (P40681) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase),InterPro: Aldose 1-epimerase; Hypothetical protein; putative aldose 1-epimerase complement(1837700..1838719) Staphylococcus carnosus subsp. carnosus TM300 7552039 YP_002634925.1 CDS Sca_1835 NC_012121.1 1838755 1839081 R (Q99RT4) Hypothetical UPF0060 protein SAV2339/SA2130/MW2259,InterPro: Protein of unknown function UPF0060; Hypothetical protein; hypothetical protein complement(1838755..1839081) Staphylococcus carnosus subsp. carnosus TM300 7550856 YP_002634926.1 CDS Sca_1836 NC_012121.1 1839207 1840436 R (O07523) Hypothetical protein yhaP; Hypothetical protein; hypothetical protein complement(1839207..1840436) Staphylococcus carnosus subsp. carnosus TM300 7550857 YP_002634927.1 CDS Sca_1837 NC_012121.1 1840429 1841328 R (P26946) Hypothetical ABC transporter ATP-binding protein,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(1840429..1841328) Staphylococcus carnosus subsp. carnosus TM300 7550858 YP_002634928.1 CDS Sca_1838 NC_012121.1 1841451 1842161 R Hypothetical protein; hypothetical protein complement(1841451..1842161) Staphylococcus carnosus subsp. carnosus TM300 7550859 YP_002634929.1 CDS Sca_1839 NC_012121.1 1842178 1842384 R (O28481) Putative HTH-type transcriptional regulator AF1793,InterPro: Helix-turn-helix motif; Hypothetical protein; putative transcriptional regulator complement(1842178..1842384) Staphylococcus carnosus subsp. carnosus TM300 7550860 YP_002634930.1 CDS Sca_1840 NC_012121.1 1842531 1843148 R (P42621) Hypothetical protein yhaH,InterPro: Protein of unknown function DUF805; Hypothetical protein; hypothetical protein complement(1842531..1843148) Staphylococcus carnosus subsp. carnosus TM300 7550861 YP_002634931.1 CDS Sca_1840a NC_012121.1 <1843196 1843678 R similar to aa 1 - 167 of hypothetical protein SSP0562 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300652),Note: this protein is similar to the same database best hit as Sca_1841 and Sca_1842.; Hypothetical protein; hypothetical protein complement(<1843196..1843678) Staphylococcus carnosus subsp. carnosus TM300 7550862 YP_002634932.1 CDS Sca_1841 NC_012121.1 1843663 1843932 R Similar to aa 113 - 173 of hypothetical protein SSP0562 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300652) length 232 aa; Hypothetical protein; hypothetical protein complement(1843663..1843932) Staphylococcus carnosus subsp. carnosus TM300 7550863 YP_002634933.1 CDS Sca_1842 NC_012121.1 1843910 1844233 R (P42621) Hypothetical protein yhaH,InterPro: Protein of unknown function DUF805,Similar to N-terminal part of hypothetical protein SSP0562 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300652): aa 1 - 105; Hypothetical protein; hypothetical protein complement(1843910..1844233) Staphylococcus carnosus subsp. carnosus TM300 7550864 YP_002634934.1 CDS Sca_1843 NC_012121.1 1844528 1845148 D (Q8CRC1) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-),InterPro: Methylpurine-DNA glycosylase (MPG); Conserved hypothetical protein; putative 3-methyladenine DNA glycosylase 1844528..1845148 Staphylococcus carnosus subsp. carnosus TM300 7550865 YP_002634935.1 CDS nrdG NC_012121.1 1845248 1845718 R (P45080) Anaerobic ribonucleoside-triphosphate reductase activating protein (EC 1.97.1.4) (Class III anaerobic ribonucleotide reductase small component); Conserved hypothetical protein; putative anaerobic ribonucleotide reductase activating protein complement(1845248..1845718) Staphylococcus carnosus subsp. carnosus TM300 7550866 YP_002634936.1 CDS nrdD NC_012121.1 1845718 1847571 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1845718..1847571) Staphylococcus carnosus subsp. carnosus TM300 7551863 YP_002634937.1 CDS Sca_1846 NC_012121.1 1847760 1848203 R Hypothetical protein; hypothetical protein complement(1847760..1848203) Staphylococcus carnosus subsp. carnosus TM300 7551860 YP_002634938.1 CDS fni NC_012121.1 1848568 1849710 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(1848568..1849710) Staphylococcus carnosus subsp. carnosus TM300 7550867 YP_002634939.1 CDS Sca_1848 NC_012121.1 1849707 1850654 R similar to divalent cation transport ,(P43553) Aluminum resistance protein,InterPro: Magnesium and cobalt transport protein CorA; Hypothetical protein; hypothetical protein complement(1849707..1850654) Staphylococcus carnosus subsp. carnosus TM300 7551584 YP_002634940.1 CDS Sca_1849 NC_012121.1 1850765 1851247 D (Q8NZJ4) N utilization substance protein B homolog (NusB protein); Hypothetical protein; hypothetical protein 1850765..1851247 Staphylococcus carnosus subsp. carnosus TM300 7550868 YP_002634941.1 CDS Sca_1850 NC_012121.1 1851244 1851684 D (P06739) Hemolysin secretion protein D plasmid; Hypothetical protein; hypothetical protein 1851244..1851684 Staphylococcus carnosus subsp. carnosus TM300 7550869 YP_002634942.1 CDS Sca_1851 NC_012121.1 1851730 1852368 D Hypothetical protein; hypothetical protein 1851730..1852368 Staphylococcus carnosus subsp. carnosus TM300 7550870 YP_002634943.1 CDS Sca_1852 NC_012121.1 1852528 1854444 R similar to multidrug resistance proteins,(P54585) Hypothetical transport protein yhcA,InterPro: Major facilitator superfamily; Hypothetical protein; putative transport protein complement(1852528..1854444) Staphylococcus carnosus subsp. carnosus TM300 7550871 YP_002634944.1 CDS Sca_1853 NC_012121.1 1854457 1855104 R (P76185) Hypothetical protein ydhJ; Hypothetical protein; hypothetical protein complement(1854457..1855104) Staphylococcus carnosus subsp. carnosus TM300 7550872 YP_002634945.1 CDS Sca_1854 NC_012121.1 1855231 1855803 D similar to TetR family regulatory protein,(P46330) Putative HTH-type transcriptional regulator yxbF,InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; putative transcriptional regulator 1855231..1855803 Staphylococcus carnosus subsp. carnosus TM300 7550873 YP_002634946.1 CDS Sca_1855 NC_012121.1 1855935 1856096 D (P96706) Putative membrane protein ydgH; Hypothetical protein; hypothetical protein 1855935..1856096 Staphylococcus carnosus subsp. carnosus TM300 7550874 YP_002634947.1 CDS Sca_1856 NC_012121.1 1856102 1858435 D similar to transporter, (to B. subtilis YdgH protein),(P96706) Putative membrane protein ydgH,InterPro: Sterol-sensing 5TM box; Hypothetical protein; hypothetical protein 1856102..1858435 Staphylococcus carnosus subsp. carnosus TM300 7550875 YP_002634948.1 CDS tcaB NC_012121.1 1858507 1859727 R Hypothetical protein; TcaB protein complement(1858507..1859727) Staphylococcus carnosus subsp. carnosus TM300 7550876 YP_002634949.1 CDS tcaA NC_012121.1 1859920 1861278 R Hypothetical protein; TcaA protein complement(1859920..1861278) Staphylococcus carnosus subsp. carnosus TM300 7552170 YP_002634950.1 CDS Sca_1859 NC_012121.1 1861610 1862071 R similar to TcaR transcriptional regulator Staphylococcus epidermidis,(Q8NVA6) Putative HTH-type transcriptional regulator MW2183,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative transcriptional regulator complement(1861610..1862071) Staphylococcus carnosus subsp. carnosus TM300 7552169 YP_002634951.1 CDS Sca_1860 NC_012121.1 1862232 1863221 D (P33017) SanA protein,InterPro: Protein of unknown function DUF218; Hypothetical protein; hypothetical protein 1862232..1863221 Staphylococcus carnosus subsp. carnosus TM300 7550877 YP_002634952.1 CDS Sca_1861 NC_012121.1 1863298 1863987 R (Q58903) Hypothetical ABC transporter ATP-binding protein MJ1508,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(1863298..1863987) Staphylococcus carnosus subsp. carnosus TM300 7550878 YP_002634953.1 CDS Sca_1862 NC_012121.1 1863987 1865045 R (Q50735) Hypothetical protein Rv2563/MT2639/Mb2592 precursor,InterPro: Protein of unknown function DUF214; Hypothetical protein; hypothetical protein complement(1863987..1865045) Staphylococcus carnosus subsp. carnosus TM300 7550879 YP_002634954.1 CDS Sca_1863 NC_012121.1 1865210 1865884 D similar to two component histidine kinase sensor,(P94414) Hypothetical sensor-like histidine kinase yclK (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; hypothetical protein 1865210..1865884 Staphylococcus carnosus subsp. carnosus TM300 7550880 YP_002634955.1 CDS Sca_1864 NC_012121.1 1865877 1867256 D similar to two component histidine kinase sensor,(P94414) Hypothetical sensor-like histidine kinase yclK (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; hypothetical protein 1865877..1867256 Staphylococcus carnosus subsp. carnosus TM300 7550881 YP_002634956.1 CDS mqo NC_012121.1 1867306 1868781 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(1867306..1868781) Staphylococcus carnosus subsp. carnosus TM300 7550882 YP_002634957.1 CDS Sca_1866 NC_012121.1 1869105 1870277 D (O05083) Putative glycosyl transferase HI1698 (EC 2.-.-.-),InterPro: Glycosyl transferase group 1; Hypothetical protein; putative transferase 1869105..1870277 Staphylococcus carnosus subsp. carnosus TM300 7551805 YP_002634958.1 CDS Sca_1867 NC_012121.1 1870378 1871979 R (Q9K5Z9) L-lactate permease,InterPro: L-lactate permease; Hypothetical protein; putative L-lactate permease lctP complement(1870378..1871979) Staphylococcus carnosus subsp. carnosus TM300 7550883 YP_002634959.1 CDS Sca_1868 NC_012121.1 1872381 1874102 D (Q8RKI5) Putative CDP-glycerol:glycerophosphate glycerophosphotransferase tarF (EC 2.7.8.-),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; hypothetical protein 1872381..1874102 Staphylococcus carnosus subsp. carnosus TM300 7550884 YP_002634960.1 CDS Sca_1869 NC_012121.1 1874164 1874964 R (O85467) Spore germination protein gerIA; Hypothetical protein; hypothetical protein complement(1874164..1874964) Staphylococcus carnosus subsp. carnosus TM300 7550885 YP_002634961.1 CDS Sca_1870 NC_012121.1 1875183 1876178 D (P26646) Protein yhdH,InterPro: Zinc-containing alcohol dehydrogenase superfamily; Hypothetical protein; hypothetical protein 1875183..1876178 Staphylococcus carnosus subsp. carnosus TM300 7550886 YP_002634962.1 CDS Sca_1871 NC_012121.1 1876376 1877740 D similar to bicyclomycin resistance protein TcaB (Staphylococcus epidermides),(P46333) Probable metabolite transport protein csbC,InterPro: Sugar transporter; Hypothetical protein; hypothetical protein 1876376..1877740 Staphylococcus carnosus subsp. carnosus TM300 7550887 YP_002634963.1 CDS Sca_1872 NC_012121.1 1877871 1878908 R similar to thioredoxin reductase ,(P52214) Thioredoxin reductase (EC 1.8.1.9) (TRXR) (TR),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; hypothetical protein complement(1877871..1878908) Staphylococcus carnosus subsp. carnosus TM300 7550888 YP_002634964.1 CDS Sca_1873 NC_012121.1 1879058 1879489 R (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.24.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.24.-) (3CL-PRO) (3; Hypothetical protein; hypothetical protein complement(1879058..1879489) Staphylococcus carnosus subsp. carnosus TM300 7550889 YP_002634965.1 CDS Sca_1874 NC_012121.1 1879583 1880017 R similar to MarR family regulatory protein,(P55740) Transcriptional regulator slyA,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative transcriptional regulator complement(1879583..1880017) Staphylococcus carnosus subsp. carnosus TM300 7550890 YP_002634966.1 CDS Sca_1875 NC_012121.1 1880176 1881111 D similar to cationic transporter,(Q58439) CorA-like protein,InterPro: Mg2+ transporter protein CorA-like; Hypothetical protein; hypothetical protein 1880176..1881111 Staphylococcus carnosus subsp. carnosus TM300 7550891 YP_002634967.1 CDS Sca_1876 NC_012121.1 1881165 1881725 R Hypothetical protein; hypothetical protein complement(1881165..1881725) Staphylococcus carnosus subsp. carnosus TM300 7550892 YP_002634968.1 CDS Sca_1877 NC_012121.1 1881853 1882203 D (P48785) Pathogenesis-related homeodomain protein (PRHA); Hypothetical protein; hypothetical protein 1881853..1882203 Staphylococcus carnosus subsp. carnosus TM300 7550893 YP_002634969.1 CDS gltT NC_012121.1 1882366 1883643 R (P24943) Proton/sodium-glutamate symport protein (Glutamate-aspartate carrier protein),InterPro: Sodium:dicarboxylate symporter; Conserved hypothetical protein; putative proton/sodium-glutamate symport protein complement(1882366..1883643) Staphylococcus carnosus subsp. carnosus TM300 7550894 YP_002634970.1 CDS Sca_1879 NC_012121.1 1883825 1884403 R (P96661) Hypothetical transport protein ydeD,InterPro: Protein of unknown function DUF6; Hypothetical protein; hypothetical protein complement(1883825..1884403) Staphylococcus carnosus subsp. carnosus TM300 7551650 YP_002634971.1 CDS Sca_1880 NC_012121.1 1884946 1885305 R Hypothetical protein; hypothetical protein complement(1884946..1885305) Staphylococcus carnosus subsp. carnosus TM300 7550895 YP_002634972.1 CDS Sca_1881 NC_012121.1 1885669 1886106 D similar to transcriptional regulator,(O34777) Organic hydroperoxide resistance transcriptional regulator,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; hypothetical protein 1885669..1886106 Staphylococcus carnosus subsp. carnosus TM300 7550896 YP_002634973.1 CDS Sca_1882 NC_012121.1 1886259 1886666 D (O30851) Heat shock protein HSP.16.4,InterPro: Heat shock protein Hsp20; Hypothetical protein; hypothetical protein 1886259..1886666 Staphylococcus carnosus subsp. carnosus TM300 7550897 YP_002634974.1 CDS mvaA NC_012121.1 1886752 1888026 R (P13702) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC 1.1.1.88) (HMG-CoA reductase),InterPro: Hydroxymethylglutaryl-coenzyme A reductase; Hypothetical protein; putative hydroxymethylglutaryl-CoA reductase complement(1886752..1888026) Staphylococcus carnosus subsp. carnosus TM300 7550898 YP_002634975.1 CDS thiL NC_012121.1 1888033 1889184 R (Q46939) Probable acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase),InterPro: Thiolase; Hypothetical protein; putative acetyl-CoA acetyltransferase complement(1888033..1889184) Staphylococcus carnosus subsp. carnosus TM300 7551832 YP_002634976.1 CDS mvaS NC_012121.1 1889298 1890467 D former orf1; similar to condensing-enzymes;,(P40830) Putative polyketide biosynthesis protein pksG,InterPro: Hydroxymethylglutaryl-coenzyme A synthase; Hypothetical protein; putative hydroxymethylglutaryl-CoA synthase 1889298..1890467 Staphylococcus carnosus subsp. carnosus TM300 7552182 YP_002634977.1 CDS Sca_1886 NC_012121.1 1890685 1891884 D former orf2, similar to SpoVE, RodA, and FtsW;,(O07639) Hypothetical protein ylaO,InterPro: Cell cycle protein; Hypothetical protein; putative cell division protein 1890685..1891884 Staphylococcus carnosus subsp. carnosus TM300 7551836 YP_002634978.1 CDS narT NC_012121.1 1892022 1893188 R Hypothetical protein; nitrate transporter complement(1892022..1893188) Staphylococcus carnosus subsp. carnosus TM300 7550899 YP_002634979.1 CDS nreC NC_012121.1 1893477 1894130 R as part of NreBC controls genes involved in,nitrate and nitrite reduction,(Q51373) Response regulator gacA (Global activator),InterPro: Response regulator receiver; Hypothetical protein; response regulator of the two-component regulatory complement(1893477..1894130) Staphylococcus carnosus subsp. carnosus TM300 7551850 YP_002634980.1 CDS nreB NC_012121.1 1894148 1895191 R as part of NreBC controls genes involved in,nitrate and nitrite reduction,P29905) Methanol utilization control sensor protein moxY (EC 2.7.3.-),InterPro: Histidine kinase; Hypothetical protein; NreB protein complement(1894148..1895191) Staphylococcus carnosus subsp. carnosus TM300 7551867 YP_002634981.1 CDS nreA NC_012121.1 1895169 1895636 R similar to the N-terminus of NifA of Azospirillum,brasilense,(Q06407) Rho-type GTPase-activating protein; Hypothetical protein; NreA protein complement(1895169..1895636) Staphylococcus carnosus subsp. carnosus TM300 7551866 YP_002634982.1 CDS narI NC_012121.1 1895652 1896314 R similar to Escherichia coli nitrate reductases NRA,and NRZ gamma subunits,(P19316) Respiratory nitrate reductase 2 gamma chain (EC 1.7.99.4),InterPro: Nitrate reductase gamma subunit; Hypothetical protein; NarI protein complement(1895652..1896314) Staphylococcus carnosus subsp. carnosus TM300 7551865 YP_002634983.1 CDS narJ NC_012121.1 1896328 1896903 R similar to Escherichia coli nitrate reductases NRA,and NRZ delta subunits,(P42178) Nitrate reductase delta chain (EC 1.7.99.4),InterPro: Nitrate reductase delta subunit; Hypothetical protein; NarJ protein complement(1896328..1896903) Staphylococcus carnosus subsp. carnosus TM300 7551848 YP_002634984.1 CDS narH NC_012121.1 1896896 1898449 R (P42176) Nitrate reductase beta chain (EC 1.7.99.4),InterPro: Nitrate reductase beta subunit; Hypothetical protein; nitrate reductase beta chain complement(1896896..1898449) Staphylococcus carnosus subsp. carnosus TM300 7551849 YP_002634985.1 CDS narG NC_012121.1 1898463 1902137 R respiratory nitrate reductase alpha chain complement(1898463..1902137) Staphylococcus carnosus subsp. carnosus TM300 7551847 YP_002634986.1 CDS sirB NC_012121.1 1902430 1903383 R similar to C-terminus of Escherichia coli CysG,(P42437) Uroporphyrin-III C-methyltransferase (EC 2.1.1.107) (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM),InterPro: Uroporphyrin-III C-methyltransferase C-terminal; Hypothetical protein; SirB protein complement(1902430..1903383) Staphylococcus carnosus subsp. carnosus TM300 7551846 YP_002634987.1 CDS nirD NC_012121.1 1903374 1903688 R similar to Escherichia coli NADH-dependent nitrite,reductase small subunit NirD,(P42436) Assimilatory nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4),InterPro: Rieske [2Fe-2S] domain; Hypothetical protein; NirD protein complement(1903374..1903688) Staphylococcus carnosus subsp. carnosus TM300 7552135 YP_002634988.1 CDS nirB NC_012121.1 1903691 1906096 R Nitrite reductase,(P42435) Nitrite reductase [NAD(P)H] (EC 1.7.1.4),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Hypothetical protein; NirB complement(1903691..1906096) Staphylococcus carnosus subsp. carnosus TM300 7551856 YP_002634989.1 CDS sirA NC_012121.1 1906100 1906555 R similar to N-terminus of Escherichia coli CysG; Hypothetical protein; SirA complement(1906100..1906555) Staphylococcus carnosus subsp. carnosus TM300 7551854 YP_002634990.1 CDS nirR NC_012121.1 1906556 1907278 R involved in nitrite reduction; Hypothetical protein; NirR protein complement(1906556..1907278) Staphylococcus carnosus subsp. carnosus TM300 7552134 YP_002634991.1 CDS nirC NC_012121.1 1907406 1908236 R NirC protein complement(1907406..1908236) Staphylococcus carnosus subsp. carnosus TM300 7551857 YP_002634992.1 CDS Sca_1901 NC_012121.1 1908454 1908642 R Hypothetical protein; hypothetical protein complement(1908454..1908642) Staphylococcus carnosus subsp. carnosus TM300 7551855 YP_002634993.1 CDS Sca_1902 NC_012121.1 1908752 1909222 R (P35453) Homeobox protein Hox-D13 (Hox-4I),InterPro: Protein of unknown function DUF704; Hypothetical protein; hypothetical protein complement(1908752..1909222) Staphylococcus carnosus subsp. carnosus TM300 7550900 YP_002634994.1 CDS Sca_1903 NC_012121.1 1909366 1909881 R (Q7N562) Hypothetical UPF0312 protein plu2095 precursor,InterPro: YceI; Hypothetical protein; hypothetical protein complement(1909366..1909881) Staphylococcus carnosus subsp. carnosus TM300 7550901 YP_002634995.1 CDS Sca_1904 NC_012121.1 1910005 1910889 R similar to cobalamin synthesis related protein CobW,(P29937) CobW protein,InterPro: Cobalamin synthesis protein/P47K; Hypothetical protein; hypothetical protein complement(1910005..1910889) Staphylococcus carnosus subsp. carnosus TM300 7550902 YP_002634996.1 CDS Sca_1905 NC_012121.1 1910945 1912276 R (Q57986) Ferrous iron transport protein B; Hypothetical protein; hypothetical protein complement(1910945..1912276) Staphylococcus carnosus subsp. carnosus TM300 7550903 YP_002634997.1 CDS Sca_1906 NC_012121.1 1912270 1913388 R (P50736) Hypothetical protein ypdA,InterPro: NAD-binding site; Hypothetical protein; hypothetical protein complement(1912270..1913388) Staphylococcus carnosus subsp. carnosus TM300 7550904 YP_002634998.1 CDS Sca_1907 NC_012121.1 1913621 1914220 R (O32218) Disulfide bond formation protein D precursor (Disulfide oxidoreductase D) (Thiol-disulfide oxidoreductase D); Hypothetical protein; hypothetical protein complement(1913621..1914220) Staphylococcus carnosus subsp. carnosus TM300 7550905 YP_002634999.1 CDS Sca_1908 NC_012121.1 1914429 1915166 R similar to ABC transporter, ATP binding subunit ,(P54537) Probable amino-acid ABC transporter ATP-binding protein yqiZ,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter complement(1914429..1915166) Staphylococcus carnosus subsp. carnosus TM300 7550906 YP_002635000.1 CDS Sca_1909 NC_012121.1 1915163 1915870 R similar to ABC transporter, permease protein ,(P76315) Hypothetical amino-acid ABC transporter permease protein yecS,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; hypothetical protein complement(1915163..1915870) Staphylococcus carnosus subsp. carnosus TM300 7550907 YP_002635001.1 CDS Sca_1910 NC_012121.1 1915881 1916669 R similar to extracellular solute-binding lipoprotein,(P45024) Probable amino-acid ABC transporter binding protein HI1080 precursor,InterPro: Bacterial extracellular solute-binding protein family 3; Hypothetical protein; hypothetical protein complement(1915881..1916669) Staphylococcus carnosus subsp. carnosus TM300 7550908 YP_002635002.1 CDS Sca_1911 NC_012121.1 1916916 1917026 D Hypothetical protein; hypothetical protein 1916916..1917026 Staphylococcus carnosus subsp. carnosus TM300 7550909 YP_002635003.1 CDS gpmA NC_012121.1 1917289 1917975 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1917289..1917975) Staphylococcus carnosus subsp. carnosus TM300 7550910 YP_002635004.1 CDS Sca_1913 NC_012121.1 1918258 1918626 D (Q8CMZ9) Immunodominant staphylococcal antigen A precursor; Hypothetical protein; hypothetical protein 1918258..1918626 Staphylococcus carnosus subsp. carnosus TM300 7550911 YP_002635005.1 CDS Sca_1914 NC_012121.1 1918767 1919660 R (P46348) Hypothetical UPF0018 protein yeaB,InterPro: Cation efflux protein; Hypothetical protein; hypothetical protein complement(1918767..1919660) Staphylococcus carnosus subsp. carnosus TM300 7550912 YP_002635006.1 CDS Sca_1915 NC_012121.1 1919832 1920215 R (Q9CDA3) Hypothetical protein ML0110,InterPro: GtrA-like protein; Hypothetical protein; hypothetical protein complement(1919832..1920215) Staphylococcus carnosus subsp. carnosus TM300 7550913 YP_002635007.1 CDS Sca_1916 NC_012121.1 1920856 1922052 D similar to bicyclomycin resistance protein TcaB,(P45123) Bicyclomycin resistance protein homolog,InterPro: Major facilitator superfamily; Hypothetical protein; hypothetical protein 1920856..1922052 Staphylococcus carnosus subsp. carnosus TM300 7550914 YP_002635008.1 CDS Sca_1917 NC_012121.1 1922165 1922782 D Hypothetical protein; hypothetical protein 1922165..1922782 Staphylococcus carnosus subsp. carnosus TM300 7550915 YP_002635009.1 CDS Sca_1918 NC_012121.1 1923037 1924434 D (P96704) Hypothetical transport protein ydgF,InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid permease 1923037..1924434 Staphylococcus carnosus subsp. carnosus TM300 7550916 YP_002635010.1 CDS Sca_1919 NC_012121.1 1924491 1925393 R (P26093) Lipoprotein E precursor (Outer membrane protein P4) (OMP P4),InterPro: 5-nucleotidase lipoprotein e(P4); Conserved hypothetical protein; hypothetical protein complement(1924491..1925393) Staphylococcus carnosus subsp. carnosus TM300 7550917 YP_002635011.1 CDS Sca_1920 NC_012121.1 1925559 1927388 R similar to putative membrane proteins and amino acid transporters.,(P33016) Hypothetical transport protein yeeF,InterPro: Amino acid/polyamine transporter family I; Hypothetical protein; hypothetical protein complement(1925559..1927388) Staphylococcus carnosus subsp. carnosus TM300 7550918 YP_002635012.1 CDS Sca_1921 NC_012121.1 1927689 1929260 D similar to beta-lactamase,similar to fmtA-like protein (Staphylococcus aureus),(P00811) Beta-lactamase precursor (EC 3.5.2.6) (Cephalosporinase),InterPro: Beta-lactamase; Hypothetical protein; hypothetical protein 1927689..1929260 Staphylococcus carnosus subsp. carnosus TM300 7550919 YP_002635013.1 CDS Sca_1922 NC_012121.1 1929665 1931059 R (P27304) Multidrug resistance protein B,InterPro: General substrate transporter; Hypothetical protein; putative integral membrane efflux protein complement(1929665..1931059) Staphylococcus carnosus subsp. carnosus TM300 7550920 YP_002635014.1 CDS lytS NC_012121.1 1931305 1933086 D (Q8CR79) Sensor protein lytS (EC 2.7.3.-),InterPro: GAF domain; Hypothetical protein; two-component sensor histidine kinase 1931305..1933086 Staphylococcus carnosus subsp. carnosus TM300 7550921 YP_002635015.1 CDS lytR NC_012121.1 1933067 1933867 D (P60609) Sensory transduction protein lytR,InterPro: Response regulator AlgR/VirR/ComE type; Hypothetical protein; two-component response regulator 1933067..1933867 Staphylococcus carnosus subsp. carnosus TM300 7551766 YP_002635016.1 CDS lrgA NC_012121.1 1934110 1934571 D similar to ,(P60649) Antiholin-like protein lrgA,InterPro: LrgA family; Hypothetical protein; putative holin-like protein LrgA 1934110..1934571 Staphylococcus carnosus subsp. carnosus TM300 7551765 YP_002635017.1 CDS lrgB NC_012121.1 1934568 1935269 D in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 1934568..1935269 Staphylococcus carnosus subsp. carnosus TM300 7551755 YP_002635018.1 CDS Sca_1927 NC_012121.1 1935560 1935919 D (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propionyl-CoA synthetase); Hypothetical protein; hypothetical protein 1935560..1935919 Staphylococcus carnosus subsp. carnosus TM300 7551756 YP_002635019.1 CDS Sca_1928 NC_012121.1 1935938 1936300 D (O54990) Prominin 1 precursor (Prominin-like protein 1) (Antigen AC133 homolog); Hypothetical protein; hypothetical protein 1935938..1936300 Staphylococcus carnosus subsp. carnosus TM300 7550922 YP_002635020.1 CDS Sca_1929 NC_012121.1 1936302 1936853 D similar to transcriptional regulator TetR family (Bacillus subtilis),similar to transcriptional regulator AcrR family (Staphylococcus epidermidis),(Q10774) Putative HTH-type transcriptional regulator Rv1556/MT1607/Mb1581,InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; putative transcriptional regulator 1936302..1936853 Staphylococcus carnosus subsp. carnosus TM300 7550923 YP_002635021.1 CDS Sca_1930 NC_012121.1 1936940 1937710 R similar to acetyl esterase (Caldocellum saccharolyticum),similar to tributyrin esterase (Staphylococcus epidermidis) ,(P23553) Acetyl esterase (EC 3.1.-.-) (Acetylxylosidase),InterPro: Putative esterase; Hypothetical protein; putative esterase complement(1936940..1937710) Staphylococcus carnosus subsp. carnosus TM300 7550924 YP_002635022.1 CDS opuCD NC_012121.1 1937796 1938479 R (O34742) Glycine betaine/carnitine/choline transport system permease protein opuCD,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative glycine betaine/carnitine/choline transport system permease complement(1937796..1938479) Staphylococcus carnosus subsp. carnosus TM300 7550925 YP_002635023.1 CDS opuCC NC_012121.1 1938479 1939420 R (O32243) Glycine betaine/carnitine/choline-binding protein precursor (Osmoprotectant-binding protein),InterPro: Substrate-binding region of ABC-type glycine betaine transport system; Hypothetical protein; putative glycine betaine/carnitine/choline ABC transporter (osmoprotec) opuCC complement(1938479..1939420) Staphylococcus carnosus subsp. carnosus TM300 7551893 YP_002635024.1 CDS opuCB NC_012121.1 1939439 1940074 R (O34878) Glycine betaine/carnitine/choline transport system permease protein opuCB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative glycine betaine/carnitine/choline transport system permease complement(1939439..1940074) Staphylococcus carnosus subsp. carnosus TM300 7551892 YP_002635025.1 CDS opuCA NC_012121.1 1940074 1941327 R (Q45460) Choline transport ATP-binding protein opuBA,InterPro: Glycine betaine/L-proline transport ATP-binding subunit; Hypothetical protein; putative glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCA complement(1940074..1941327) Staphylococcus carnosus subsp. carnosus TM300 7551891 YP_002635026.1 CDS Sca_1935 NC_012121.1 1942067 1942663 R (O75146) Huntingtin interacting protein 1 related (Hip1-related) (Hip 12); Hypothetical protein; hypothetical protein complement(1942067..1942663) Staphylococcus carnosus subsp. carnosus TM300 7551890 YP_002635027.1 CDS Sca_1936 NC_012121.1 1943170 1944828 D similar to L-aspartate transporter in Bacillus subtilis,(O07002) Asparate-proton symporter (L-aspartate transporter),InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid transporter 1943170..1944828 Staphylococcus carnosus subsp. carnosus TM300 7550926 YP_002635028.1 CDS Sca_1937 NC_012121.1 1944934 1946298 D similar to para-nitrobenzyl esterase chain A (Bacillus subtilis),(P37967) Para-nitrobenzyl esterase (EC 3.1.1.-) (PNB carboxy-esterase) (PNBCE),InterPro: Carboxylesterase type B; Hypothetical protein; putative para-nitrobenzyl esterase chain A 1944934..1946298 Staphylococcus carnosus subsp. carnosus TM300 7550927 YP_002635029.1 CDS Sca_1938 NC_012121.1 1946347 1947540 R similar to chloramphenicol resistance protein,(P44535) Probable sugar efflux transporter,InterPro: General substrate transporter; Hypothetical protein; hypothetical protein complement(1946347..1947540) Staphylococcus carnosus subsp. carnosus TM300 7550928 YP_002635030.1 CDS Sca_1939 NC_012121.1 1947722 1948495 R (P77307) Hypothetical UPF0014 membrane protein ybbM,InterPro: Conserved hypothetical protein 245; Hypothetical protein; hypothetical protein complement(1947722..1948495) Staphylococcus carnosus subsp. carnosus TM300 7550929 YP_002635031.1 CDS Sca_1940 NC_012121.1 1948492 1949163 R (P77279) Hypothetical ABC transporter ATP-binding protein ybbL,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(1948492..1949163) Staphylococcus carnosus subsp. carnosus TM300 7550930 YP_002635032.1 CDS Sca_1941 NC_012121.1 1949286 1950032 R truncated ORF, similar to protein of pXO2-46 ,(P45613) Hypothetical 37.9 kDa protein in ptsH 3region (ORF1),InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein complement(1949286..1950032) Staphylococcus carnosus subsp. carnosus TM300 7550931 YP_002635033.1 CDS Sca_1942 NC_012121.1 1950171 1950956 R similar to protein of pXO2-46, incomplete alignment,(Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated) (A-T mutated),InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein complement(1950171..1950956) Staphylococcus carnosus subsp. carnosus TM300 7550932 YP_002635034.1 CDS Sca_1943 NC_012121.1 1951153 1951617 R (P33385) Hypothetical lipoprotein Lmo0207 precursor; Hypothetical protein; hypothetical protein complement(1951153..1951617) Staphylococcus carnosus subsp. carnosus TM300 7550933 YP_002635035.1 CDS ppx NC_012121.1 1951894 1953492 D (P44828) Putative exopolyphosphatase (EC 3.6.1.11) (Metaphosphatase),InterPro: Ppx/GppA phosphatase; Hypothetical protein; putative exopolyphosphatase 1951894..1953492 Staphylococcus carnosus subsp. carnosus TM300 7550934 YP_002635036.1 CDS ppk NC_012121.1 1953706 1955880 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1953706..1955880 Staphylococcus carnosus subsp. carnosus TM300 7551955 YP_002635037.1 CDS argE NC_012121.1 1956000 1957232 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(1956000..1957232) Staphylococcus carnosus subsp. carnosus TM300 7551954 YP_002635038.1 CDS Sca_1947 NC_012121.1 1957296 1958117 R Hypothetical protein; hypothetical protein complement(1957296..1958117) Staphylococcus carnosus subsp. carnosus TM300 7551409 YP_002635039.1 CDS gntP NC_012121.1 1958192 1959553 R (P12012) Gluconate permease,InterPro: Gluconate transporter; Hypothetical protein; putative gluconate permease complement(1958192..1959553) Staphylococcus carnosus subsp. carnosus TM300 7550935 YP_002635040.1 CDS gntK NC_012121.1 1959677 1961212 R (P12011) Gluconokinase (EC 2.7.1.12) (Gluconate kinase),InterPro: Gluconate kinase; Hypothetical protein; putative gluconokinase complement(1959677..1961212) Staphylococcus carnosus subsp. carnosus TM300 7551658 YP_002635041.1 CDS gntR NC_012121.1 1961239 1961946 R (P10585) Gluconate operon transcriptional repressor (P28 protein),InterPro: Bacterial regulatory protein GntR family; Hypothetical protein; putative gluconate operon transcriptional repressor complement(1961239..1961946) Staphylococcus carnosus subsp. carnosus TM300 7551657 YP_002635042.1 CDS Sca_1951 NC_012121.1 1962050 1962646 D (P21341) Protease synthase and sporulation negative regulatory protein PAI,InterPro: Negative transcriptional regulator; Hypothetical protein; hypothetical protein 1962050..1962646 Staphylococcus carnosus subsp. carnosus TM300 7551659 YP_002635043.1 CDS Sca_1952 NC_012121.1 1962711 1963319 R (P06800) Leukocyte common antigen precursor (EC 3.1.3.48) (L-CA) (Lymphocyte common antigen Ly-5) (CD45) (T200); Hypothetical protein; hypothetical protein complement(1962711..1963319) Staphylococcus carnosus subsp. carnosus TM300 7550936 YP_002635044.1 CDS clpL NC_012121.1 1963494 1965602 R (Q06716) ATP-dependent protease ATP-binding subunit clpL,InterPro: AAA ATPase central region; Hypothetical protein; putative ATP-dependent Clp proteinase chain clpL complement(1963494..1965602) Staphylococcus carnosus subsp. carnosus TM300 7550937 YP_002635045.1 CDS Sca_1954 NC_012121.1 1966319 1967017 R (P39583) Hypothetical protein ywaC,InterPro: RelA/SpoT; Hypothetical protein; hypothetical protein complement(1966319..1967017) Staphylococcus carnosus subsp. carnosus TM300 7551474 YP_002635046.1 CDS Sca_1955 NC_012121.1 1967296 1968495 D (P31521) 47 kDa protein (P47K),InterPro: Cobalamin synthesis protein/P47K; Hypothetical protein; hypothetical protein 1967296..1968495 Staphylococcus carnosus subsp. carnosus TM300 7550938 YP_002635047.1 CDS Sca_1956 NC_012121.1 1968726 1969139 R (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine adenosyltransferase) (AdoMet synthetase); Hypothetical protein; hypothetical protein complement(1968726..1969139) Staphylococcus carnosus subsp. carnosus TM300 7550939 YP_002635048.1 CDS Sca_1957 NC_012121.1 1969224 1971125 R (P45537) Hypothetical protein yhfK; Hypothetical protein; hypothetical protein complement(1969224..1971125) Staphylococcus carnosus subsp. carnosus TM300 7550940 YP_002635049.1 CDS Sca_1958 NC_012121.1 1971277 1971975 R (Q04518) Alpha-acetolactate decarboxylase (EC 4.1.1.5),InterPro: Alpha-acetolactate decarboxylase; Conserved hypothetical protein; putative alpha-acetolactate decarboxylase complement(1971277..1971975) Staphylococcus carnosus subsp. carnosus TM300 7550941 YP_002635050.1 CDS Sca_1959 NC_012121.1 1972099 1972401 R (P73602) Hypothetical protein sll1783,InterPro: Antibiotic biosynthesis monooxygenase; Hypothetical protein; hypothetical protein complement(1972099..1972401) Staphylococcus carnosus subsp. carnosus TM300 7550942 YP_002635051.1 CDS Sca_1960 NC_012121.1 1972548 1973822 R (P42237) Probable glucarate transporter (D-glucarate permease),InterPro: General substrate transporter; Conserved hypothetical protein; putative glucarate transporter complement(1972548..1973822) Staphylococcus carnosus subsp. carnosus TM300 7550943 YP_002635052.1 CDS Sca_1961 NC_012121.1 1974348 1974968 D (Q9CHL6) Alkaline phosphatase like protein,InterPro: DedA family; Hypothetical protein; putative alkaline phosphatase 1974348..1974968 Staphylococcus carnosus subsp. carnosus TM300 7550944 YP_002635053.1 CDS Sca_1962 NC_012121.1 1975024 1975683 R (Q18879) Caveolin-2; Hypothetical protein; hypothetical protein complement(1975024..1975683) Staphylococcus carnosus subsp. carnosus TM300 7550945 YP_002635054.1 CDS Sca_1963 NC_012121.1 1975680 1976528 R (P72335) Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I),InterPro: ABC transporter; Conserved hypothetical protein; putative ABC transporter ATP-binding protein complement(1975680..1976528) Staphylococcus carnosus subsp. carnosus TM300 7550946 YP_002635055.1 CDS fbp NC_012121.1 1976756 1978708 D (Q82WQ0) Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55-P1P4-tetraphosphate pyrophosphohydrolase),InterPro: Metallo-phosphoesterase; Conserved hypothetical protein; putative fructose-bisphosphatase 1976756..1978708 Staphylococcus carnosus subsp. carnosus TM300 7550947 YP_002635056.1 CDS lacH NC_012121.1 1978764 1981778 R High confidence in function and specificity; beta-D-galactosidase complement(1978764..1981778) Staphylococcus carnosus subsp. carnosus TM300 7551563 YP_002635057.1 CDS lacR NC_012121.1 1981871 1982716 D (O33813) Lactose operon transcription activator,InterPro: Helix-turn-helix AraC type; High confidence in function and specificity; lactose operon transcription regulator 1981871..1982716 Staphylococcus carnosus subsp. carnosus TM300 7551735 YP_002635058.1 CDS lacP NC_012121.1 1982732 1984165 R (O33814) Lactose permease (Lactose-proton symport) (Lactose transport protein),InterPro: Sodium:galactoside symporter; High confidence in function and specificity; melibiose:sodium symporter complement(1982732..1984165) Staphylococcus carnosus subsp. carnosus TM300 7551738 YP_002635059.1 CDS Sca_1969 NC_012121.1 1984514 1985407 R (Q9WXE6) Chlorohydroquinone/hydroquinone 12-dioxygenase (EC 1.13.11.-) (Hydroquinone meta-cleavage dioxygenase),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Conserved hypothetical protein; putative glyoxylase family protein complement(1984514..1985407) Staphylococcus carnosus subsp. carnosus TM300 7551736 YP_002635060.1 CDS Sca_1970 NC_012121.1 1985469 1985909 R (P54182) Putative HTH-type transcriptional regulator ypoP,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative transcription regulator MarR family complement(1985469..1985909) Staphylococcus carnosus subsp. carnosus TM300 7550948 YP_002635061.1 CDS Sca_1971 NC_012121.1 1986071 1987078 R similar to Zn-binding lipoprotein adcA,(Q9L5X1) Manganese ABC transporter substrate-binding lipoprotein precursor (Pneumococcal surface adhesin A),InterPro: Periplasmic solute binding protein; Hypothetical protein; hypothetical protein complement(1986071..1987078) Staphylococcus carnosus subsp. carnosus TM300 7550949 YP_002635062.1 CDS Sca_1972 NC_012121.1 1987370 1987651 D (P39274) Hypothetical protein yjdJ; Hypothetical protein; hypothetical protein 1987370..1987651 Staphylococcus carnosus subsp. carnosus TM300 7550950 YP_002635063.1 CDS Sca_1973 NC_012121.1 1987706 1989493 R (P35598) Putative ABC transporter ATP-binding protein exp8 (Exported protein 8),InterPro: ABC transporter transmembrane region; Hypothetical protein; putative ABC transporter ATP-binding/permease complement(1987706..1989493) Staphylococcus carnosus subsp. carnosus TM300 7550951 YP_002635064.1 CDS Sca_1974 NC_012121.1 1989477 1991273 R (P77265) Multidrug resistance-like ATP-binding protein mdlA,InterPro: ABC transporter transmembrane region; High confidence in function and specificity; ABC transporter ATP-binding protein/permease complement(1989477..1991273) Staphylococcus carnosus subsp. carnosus TM300 7550952 YP_002635065.1 CDS ddh NC_012121.1 1991325 1992320 R (Q99RB1) D-lactate dehydrogenase (EC 1.1.1.28) (D-LDH) (D-specific D-2-hydroxyacid dehydrogenase),InterPro: D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain; Hypothetical protein; D-specific D-2-hydroxyacid dehydrogenase complement(1991325..1992320) Staphylococcus carnosus subsp. carnosus TM300 7550953 YP_002635066.1 CDS Sca_1976 NC_012121.1 1992513 1993184 R (O34475) Putative NAD(P)H nitroreductase yfkO (EC 1.-.-.-),InterPro: Nitroreductase family; Hypothetical protein; putative NAD(P)H-flavin oxidoreductase complement(1992513..1993184) Staphylococcus carnosus subsp. carnosus TM300 7551516 YP_002635067.1 CDS Sca_1977 NC_012121.1 1993274 1993807 R (P96674) Putative NAD(P)H oxidoreductase ydeQ (EC 1.6.99.-),InterPro: NAD(P)H dehydrogenase (quinone); Hypothetical protein; putative NADPH oxidoreductase complement(1993274..1993807) Staphylococcus carnosus subsp. carnosus TM300 7550954 YP_002635068.1 CDS Sca_1978 NC_012121.1 1993884 1994060 R Hypothetical protein; hypothetical protein complement(1993884..1994060) Staphylococcus carnosus subsp. carnosus TM300 7550955 YP_002635069.1 CDS Sca_1979 NC_012121.1 1994237 1995127 R (P16095) L-serine dehydratase 1 (EC 4.3.1.17) (L-serine deaminase 1) (SDH 1) (L-SD1),InterPro: L-serine dehydratase alpha subunit; Hypothetical protein; putative L-serine dehydratase complement(1994237..1995127) Staphylococcus carnosus subsp. carnosus TM300 7550956 YP_002635070.1 CDS Sca_1980 NC_012121.1 1995141 1995818 R (P33074) L-serine dehydratase beta chain (EC 4.3.1.17) (L-serine deaminase) (SDH) (L-SD),InterPro: Iron-sulfur-dependent L-serine dehydratase beta subunit; Hypothetical protein; putative L-serine dehydratase beta chain complement(1995141..1995818) Staphylococcus carnosus subsp. carnosus TM300 7550957 YP_002635071.1 CDS Sca_1981 NC_012121.1 1995866 1996618 R similar to C-terminal part (67-340) of perfringolysin O regulator protein, putative [Staphylococcus epidermidis RP62A] (YP_189652) (347 aa).; Hypothetical protein; hypothetical protein complement(1995866..1996618) Staphylococcus carnosus subsp. carnosus TM300 7550958 YP_002635072.1 CDS Sca_1982 NC_012121.1 1996772 1996906 R similar to N-terminal part (aa 1-44) of perfringolysin O regulator protein (347 aa, putative [Staphylococcus epidermidis RP62A] (YP_189652).; Hypothetical protein; hypothetical protein complement(1996772..1996906) Staphylococcus carnosus subsp. carnosus TM300 7550959 YP_002635073.1 CDS Sca_1983 NC_012121.1 1997666 1998223 D (P27470) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I) (Dextransucrase) (Sucrose 6-glucosyltransferase); Hypothetical protein; hypothetical protein 1997666..1998223 Staphylococcus carnosus subsp. carnosus TM300 7550960 YP_002635074.1 CDS ccpA NC_012121.1 1998355 1999371 R (P25144) Catabolite control protein A (Glucose-resistance amylase regulator),InterPro: Periplasmic binding protein/LacI transcriptional regulator; Hypothetical protein; putative catabolite control protein A complement(1998355..1999371) Staphylococcus carnosus subsp. carnosus TM300 7550961 YP_002635075.1 CDS Sca_1985 NC_012121.1 1999442 2000206 R local similarity to lysophospholipase ,(P25026) Non-heme chloroperoxidase (EC 1.11.1.10) (Chloride peroxidase) (CPO-P) (Chloroperoxidase P),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein complement(1999442..2000206) Staphylococcus carnosus subsp. carnosus TM300 7551464 YP_002635076.1 CDS Sca_1986 NC_012121.1 2000509 2001489 D (P23516) High-affinity nickel transport protein,InterPro: High-affinity nickel-transport protein; Hypothetical protein; putative nickel transport protein 2000509..2001489 Staphylococcus carnosus subsp. carnosus TM300 7550962 YP_002635077.1 CDS alzD NC_012121.1 2001538 2001864 R (O07923) Branched-chain amino acid transport protein azlD,InterPro: Branched-chain amino acid transport; Hypothetical protein; putative branched-chain amino acid transport protein complement(2001538..2001864) Staphylococcus carnosus subsp. carnosus TM300 7550963 YP_002635078.1 CDS Sca_1988 NC_012121.1 2001866 2002744 R C-terminal part similar to branched-chain amino acid transport protein (Bacillus subtilis),(Q9ZJQ3) Hypothetical protein JHP1251,InterPro: AzlC protein; Hypothetical protein; hypothetical protein complement(2001866..2002744) Staphylococcus carnosus subsp. carnosus TM300 7551392 YP_002635079.1 CDS Sca_1989 NC_012121.1 2003143 2003697 R similar to ribosomal-protein-serine N-acetyltransferase,P13857) Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) (Acetylating enzyme for N-terminal of ribosomal protein L7/L12),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein complement(2003143..2003697) Staphylococcus carnosus subsp. carnosus TM300 7550964 YP_002635080.1 CDS Sca_1990 NC_012121.1 2003821 2004570 D similar to 2-pyrone-4,6-dicarboxylate hydrolase (Coxiella burnetii),(Q9ZNL9) Pesticidial crystal protein cry9Ea (Insecticidal delta-endotoxin CryIXE(a)) (Crystaline entomocidal protoxin) (130 kDa crystal protein); Hypothetical protein; hypothetical protein 2003821..2004570 Staphylococcus carnosus subsp. carnosus TM300 7550965 YP_002635081.1 CDS Sca_1991 NC_012121.1 2004662 2006404 R catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase complement(2004662..2006404) Staphylococcus carnosus subsp. carnosus TM300 7550966 YP_002635082.1 CDS Sca_1992 NC_012121.1 2006516 2007202 R (P60637) Holin-like protein cidB,InterPro: LrgB-like protein; Hypothetical protein; hypothetical protein complement(2006516..2007202) Staphylococcus carnosus subsp. carnosus TM300 7550967 YP_002635083.1 CDS Sca_1993 NC_012121.1 2007199 2007585 R (P60645) Holin-like protein cidA,InterPro: LrgA family; Hypothetical protein; hypothetical protein complement(2007199..2007585) Staphylococcus carnosus subsp. carnosus TM300 7550968 YP_002635084.1 CDS Sca_1994 NC_012121.1 2007892 2008779 R (P39592) Putative HTH-type transcriptional regulator ywbI,InterPro: LysR substrate binding domain; Hypothetical protein; LysR family transcriptional regulator complement(2007892..2008779) Staphylococcus carnosus subsp. carnosus TM300 7550969 YP_002635085.1 CDS Sca_1995 NC_012121.1 2008907 2010082 R (P75831) Macrolide-specific ABC-type efflux carrier,InterPro: Protein of unknown function DUF214; Hypothetical protein; putative permease complement(2008907..2010082) Staphylococcus carnosus subsp. carnosus TM300 7550970 YP_002635086.1 CDS Sca_1996 NC_012121.1 2010079 2010759 R (Q58206) ABC transporter ATP-binding protein MJ0796,InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(2010079..2010759) Staphylococcus carnosus subsp. carnosus TM300 7550971 YP_002635087.1 CDS Sca_1997 NC_012121.1 2010756 2011853 R (P76397) Hypothetical protein yegM precursor; Hypothetical protein; hypothetical protein complement(2010756..2011853) Staphylococcus carnosus subsp. carnosus TM300 7550972 YP_002635088.1 CDS Sca_1998 NC_012121.1 2012099 2012581 D Hypothetical protein; hypothetical protein 2012099..2012581 Staphylococcus carnosus subsp. carnosus TM300 7550973 YP_002635089.1 CDS Sca_1999 NC_012121.1 2012817 2013638 D (P24484) Lipase 2 (EC 3.1.1.3) (Triacylglycerol lipase),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein 2012817..2013638 Staphylococcus carnosus subsp. carnosus TM300 7550974 YP_002635090.1 CDS adaB NC_012121.1 2013675 2014187 R (Q8PY44) Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase),InterPro: Methylated-DNA-[protein]-cysteine S-methyltransferase; Hypothetical protein; putative methylated DNA-protein cysteine methyltransferase complement(2013675..2014187) Staphylococcus carnosus subsp. carnosus TM300 7550975 YP_002635091.1 CDS Sca_2001 NC_012121.1 2014323 2014505 R truncated orf,small local similarity to:,(P80544) Surface protein precursor (Plasmin-sensitive surface protein) (230 kDa cell-wall protein),InterPro: Surface protein from Gram-positive cocci anchor region; Hypothetical protein; hypothetical protein complement(2014323..2014505) Staphylococcus carnosus subsp. carnosus TM300 7551369 YP_002635092.1 CDS bioB NC_012121.1 2014633 2015643 D catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2014633..2015643 Staphylococcus carnosus subsp. carnosus TM300 7550976 YP_002635093.1 CDS srtA NC_012121.1 2015689 2016297 R (P53109) Hypothetical 65.8 kDa protein in SUT1-RCK1 intergenic region,InterPro: Sortase protein; Hypothetical protein; sortase protein complement(2015689..2016297) Staphylococcus carnosus subsp. carnosus TM300 7551443 YP_002635094.1 CDS Sca_2004 NC_012121.1 2016447 2016713 D Hypothetical protein; hypothetical protein 2016447..2016713 Staphylococcus carnosus subsp. carnosus TM300 7552145 YP_002635095.1 CDS Sca_2005 NC_012121.1 2016761 2017060 R Hypothetical protein; hypothetical protein complement(2016761..2017060) Staphylococcus carnosus subsp. carnosus TM300 7550977 YP_002635096.1 CDS Sca_2006 NC_012121.1 2017270 2017896 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2017270..2017896 Staphylococcus carnosus subsp. carnosus TM300 7550978 YP_002635097.1 CDS Sca_2007 NC_012121.1 2017945 2018895 R (Q8ZGY6) Zinc transporter zitB,InterPro: Cation efflux protein; Hypothetical protein; putative cation efflux system protein complement(2017945..2018895) Staphylococcus carnosus subsp. carnosus TM300 7550979 YP_002635098.1 CDS Sca_2008 NC_012121.1 2018984 2020414 R (Q04605) Hypothetical protein in chlN 3region (URF2) (Fragment),InterPro: Protein of unknown function DUF344; Hypothetical protein; hypothetical protein complement(2018984..2020414) Staphylococcus carnosus subsp. carnosus TM300 7550980 YP_002635099.1 CDS Sca_2009 NC_012121.1 2020572 2021441 R (Q87PM1) Hypothetical protein VP1481,InterPro: Fructosamine kinase; Hypothetical protein; hypothetical protein complement(2020572..2021441) Staphylococcus carnosus subsp. carnosus TM300 7550981 YP_002635100.1 CDS Sca_2010 NC_012121.1 2021669 2022691 D local similarity to regulatory protein (pfoS/R) (Bacillus cereus),(P19357) Solute carrier family 2 facilitated glucose transporter member 4 (Glucose transporter type 4 insulin-responsive),InterPro: Phosphotransferase system EIIC; Hypothetical protein; hypothetical protein 2021669..2022691 Staphylococcus carnosus subsp. carnosus TM300 7550982 YP_002635101.1 CDS drm NC_012121.1 2022804 2023994 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(2022804..2023994) Staphylococcus carnosus subsp. carnosus TM300 7550983 YP_002635102.1 CDS pdp NC_012121.1 2024033 2025334 R (P77836) Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) (PYNP),InterPro: Thymidine/pyrimidine-nucleoside phosphorylase; Conserved hypothetical protein; putative pyrimidine nucleoside phosphorylase complement(2024033..2025334) Staphylococcus carnosus subsp. carnosus TM300 7551541 YP_002635103.1 CDS Sca_2013 NC_012121.1 2025595 2026599 D (Q9ZUC1) Quinone oxidoreductase-like protein At1g23740,InterPro: Zinc-containing alcohol dehydrogenase superfamily; Hypothetical protein; putative alcohol dehydrogenase, zinc-containing 2025595..2026599 Staphylococcus carnosus subsp. carnosus TM300 7551920 YP_002635104.1 CDS Sca_2014 NC_012121.1 2026700 2027101 R Hypothetical protein; hypothetical protein complement(2026700..2027101) Staphylococcus carnosus subsp. carnosus TM300 7550984 YP_002635105.1 CDS Sca_2015 NC_012121.1 2027224 2027820 R (Q92A77) Menaquinone biosynthesis methyltransferase ubiE (EC 2.1.1.-),InterPro: UbiE/COQ5 methyltransferase; Conserved hypothetical protein; putative SAM-dependent methyltransferase complement(2027224..2027820) Staphylococcus carnosus subsp. carnosus TM300 7550985 YP_002635106.1 CDS pflA NC_012121.1 2027911 2028666 R (O68575) Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) (PFL-activating enzyme),InterPro: Radical SAM; High confidence in function and specificity; formate acetyltransferase activating enzyme complement(2027911..2028666) Staphylococcus carnosus subsp. carnosus TM300 7550986 YP_002635107.1 CDS pflB NC_012121.1 2028731 2030980 R (P09373) Formate acetyltransferase 1 (EC 2.3.1.54) (Pyruvate formate-lyase 1),InterPro: Formate acetyltransferase; High confidence in function and specificity; formate acetyltransferase complement(2028731..2030980) Staphylococcus carnosus subsp. carnosus TM300 7551930 YP_002635108.1 CDS Sca_2018 NC_012121.1 2031251 2031622 R (P76243) Hypothetical protein yeaO,InterPro: Protein of unknown function DUF488; Hypothetical protein; hypothetical protein complement(2031251..2031622) Staphylococcus carnosus subsp. carnosus TM300 7551931 YP_002635109.1 CDS Sca_2019 NC_012121.1 2032725 2033174 R (P54493) Hypothetical protein yqgP; Hypothetical protein; hypothetical protein complement(2032725..2033174) Staphylococcus carnosus subsp. carnosus TM300 7550987 YP_002635110.1 CDS Sca_2020 NC_012121.1 2033183 2033626 R (Q82Z76) Sensory transduction protein lytT,InterPro: LytTr DNA-binding region; Hypothetical protein; hypothetical protein complement(2033183..2033626) Staphylococcus carnosus subsp. carnosus TM300 7550988 YP_002635111.1 CDS Sca_2021 NC_012121.1 2033803 2034126 R similar to C-terminal part (aa 135-236) of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE03778):238 aa,(P44068) Protein HI0882; Hypothetical protein; hypothetical protein complement(2033803..2034126) Staphylococcus carnosus subsp. carnosus TM300 7550989 YP_002635112.1 CDS Sca_2022 NC_012121.1 2034133 2034528 R similar to N-terminal part (aa 1-131) of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE0377): 238 aa ,(P44068) Protein HI0882; Hypothetical protein; hypothetical protein complement(2034133..2034528) Staphylococcus carnosus subsp. carnosus TM300 7550990 YP_002635113.1 CDS Sca_2023 NC_012121.1 2034612 2035529 R (O32975) Probable cysteine desulfurase 1 (EC 2.8.1.7); Hypothetical protein; hypothetical protein complement(2034612..2035529) Staphylococcus carnosus subsp. carnosus TM300 7550991 YP_002635114.1 CDS Sca_2024 NC_012121.1 2035638 2036060 R (Q50777) Hypothetical 16.1 kDa protein in MTR region (ORF143),InterPro: Usp domain; Hypothetical protein; hypothetical protein complement(2035638..2036060) Staphylococcus carnosus subsp. carnosus TM300 7550992 YP_002635115.1 CDS gtaB NC_012121.1 2036209 2037075 R (Q05852) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase) (General stress protein 33) (GSP33),InterPro: Nucleotidyl transferase; High confidence in function and specificity; UTP-glucose-1-phosphate uridyltransferase complement(2036209..2037075) Staphylococcus carnosus subsp. carnosus TM300 7550993 YP_002635116.1 CDS capD NC_012121.1 2037449 2039332 R (P39853) Capsular polysaccharide biosynthesis protein capD,InterPro: Polysaccharide biosynthesis protein CapD; Conserved hypothetical protein; putative capsular polysaccharide synthesis enzyme complement(2037449..2039332) Staphylococcus carnosus subsp. carnosus TM300 7551669 YP_002635117.1 CDS Sca_2027 NC_012121.1 2039452 2040198 R similar to capA, capsular polysaccharide synthesis enzyme (chain length regulator),(P71050) Hypothetical protein yveK,InterPro: Lipopolysaccharide biosynthesis; Hypothetical protein; hypothetical protein complement(2039452..2040198) Staphylococcus carnosus subsp. carnosus TM300 7551456 YP_002635118.1 CDS Sca_2028 NC_012121.1 2040753 2040989 D (Q57987) Hypothetical protein MJ0567,InterPro: FeoA; Hypothetical protein; hypothetical protein 2040753..2040989 Staphylococcus carnosus subsp. carnosus TM300 7550994 YP_002635119.1 CDS feoB NC_012121.1 2040982 2042976 D (Q57986) Ferrous iron transport protein B homolog,InterPro: Ferrous iron transport protein B; Conserved hypothetical protein; putative ferrous iron transport protein B 2040982..2042976 Staphylococcus carnosus subsp. carnosus TM300 7550995 YP_002635120.1 CDS Sca_2030 NC_012121.1 2042989 2043165 D Hypothetical protein; hypothetical protein 2042989..2043165 Staphylococcus carnosus subsp. carnosus TM300 7551571 YP_002635121.1 CDS Sca_2031 NC_012121.1 2043370 2043708 D putative transcriptional regulator,(P39044) Hypothetical protein X,InterPro: Transcriptional regulator PadR-like family; Hypothetical protein; hypothetical protein 2043370..2043708 Staphylococcus carnosus subsp. carnosus TM300 7550996 YP_002635122.1 CDS Sca_2032 NC_012121.1 2043698 2044477 D similarity to serine/threonine protein phosphatase (Bacillus),(Q8EB91) Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55-P1P4-tetraphosphate pyrophosphohydrolase),InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein 2043698..2044477 Staphylococcus carnosus subsp. carnosus TM300 7550997 YP_002635123.1 CDS Sca_2033 NC_012121.1 2044527 2045135 R similarity to serine/threonine protein phosphatase (Bacillus),(Q8EB91) Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55-P1P4-tetraphosphate pyrophosphohydrolase),InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein complement(2044527..2045135) Staphylococcus carnosus subsp. carnosus TM300 7550998 YP_002635124.1 CDS Sca_2034 NC_012121.1 2045246 2045821 R (P09454) Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) (Acetylating enzyme for N-terminal of ribosomal protein S5),InterPro: GCN5-related N-acetyltransferase; Conserved hypothetical protein; putative GNAT family acetyltransferase complement(2045246..2045821) Staphylococcus carnosus subsp. carnosus TM300 7550999 YP_002635125.1 CDS Sca_2035 NC_012121.1 2045943 2046122 D similarity to hypothetical protein (Staph aureus); Hypothetical protein; hypothetical protein 2045943..2046122 Staphylococcus carnosus subsp. carnosus TM300 7551000 YP_002635126.1 CDS xylB NC_012121.1 2046174 2047670 R (P39211) Xylulose kinase (EC 2.7.1.17) (Xylulokinase),InterPro: Xylulokinase; Conserved hypothetical protein; putative xylulokinase complement(2046174..2047670) Staphylococcus carnosus subsp. carnosus TM300 7551001 YP_002635127.1 CDS Sca_2037 NC_012121.1 2047848 2049077 R (Q8R7S2) Probable manganese transport protein mntH; Hypothetical protein; hypothetical protein complement(2047848..2049077) Staphylococcus carnosus subsp. carnosus TM300 7552303 YP_002635128.1 CDS Sca_2038 NC_012121.1 2049081 2049839 R (Q9V005) Hypothetical UPF0271 protein PYRAB09930,InterPro: LamB/YcsF family; Hypothetical protein; LamB/YcsF family protein complement(2049081..2049839) Staphylococcus carnosus subsp. carnosus TM300 7551002 YP_002635129.1 CDS Sca_2039 NC_012121.1 2049841 2051199 R (Q96RQ3) Methylcrotonyl-CoA carboxylase alpha chain mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase alpha subunit),InterPro: Carbamoyl-phosphate synthase L chain ATP-binding; Conserved hypothetical protein; putative acetyl-CoA carboxylase (biotin carboxylase subunit), accC complement(2049841..2051199) Staphylococcus carnosus subsp. carnosus TM300 7551003 YP_002635130.1 CDS Sca_2040 NC_012121.1 2051215 2051658 R (Q9PKR5) Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP),InterPro: Biotin/lipoyl attachment; Hypothetical protein; putative biotin carboxyl carrier protein of acetyl-CoA carboxylase complement(2051215..2051658) Staphylococcus carnosus subsp. carnosus TM300 7551004 YP_002635131.1 CDS Sca_2041 NC_012121.1 2051658 2052665 R (P75745) Hypothetical protein ybgK,InterPro: Urea amidolyase-related; Hypothetical protein; hypothetical protein complement(2051658..2052665) Staphylococcus carnosus subsp. carnosus TM300 7551005 YP_002635132.1 CDS Sca_2042 NC_012121.1 2052655 2053386 R (P60495) Kinase A inhibitor (Sporulation inhibitor kipI),InterPro: Protein of unknown function DUF213; Hypothetical protein; hypothetical protein complement(2052655..2053386) Staphylococcus carnosus subsp. carnosus TM300 7551006 YP_002635133.1 CDS Sca_2043 NC_012121.1 2053953 2055023 R similar to regulatory protein pfoS/R; Hypothetical protein; hypothetical protein complement(2053953..2055023) Staphylococcus carnosus subsp. carnosus TM300 7551007 YP_002635134.1 CDS Sca_2044 NC_012121.1 2055410 2056753 D (Q03646) Merozoite surface antigen 2 precursor (MSA-2),InterPro: Uncharacterized iron-regulated membrane protein DUF337; Hypothetical protein; hypothetical protein 2055410..2056753 Staphylococcus carnosus subsp. carnosus TM300 7551008 YP_002635135.1 CDS Sca_2045 NC_012121.1 2056805 2057182 R (P41900) Transcription initiation factor IIF beta subunit (TFIIF-beta); Conserved hypothetical protein; hypothetical protein complement(2056805..2057182) Staphylococcus carnosus subsp. carnosus TM300 7551009 YP_002635136.1 CDS Sca_2046 NC_012121.1 2057302 2058522 R (Q8VCL5) Putative transporter C20orf59 homolog,InterPro: General substrate transporter; Hypothetical protein; putative metabolite transport protein complement(2057302..2058522) Staphylococcus carnosus subsp. carnosus TM300 7551010 YP_002635137.1 CDS Sca_2047 NC_012121.1 2058699 2059472 R similar to C-terminal part (110-366) of putative truncated ABC transporter permease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305](YP_302396): 368 aa,(P76242) Hypothetical transport protein yeaN,InterPro: Major facilitator superfamily; Hypothetical protein; putative permease (fragment 2) complement(2058699..2059472) Staphylococcus carnosus subsp. carnosus TM300 7551011 YP_002635138.1 CDS Sca_2048 NC_012121.1 2059469 2059921 R Similar to N-terminal part (aa 1-108) of putative truncated ABC transporter permease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_302396): 368 aa; Hypothetical protein; putative permease (fragment 1) complement(2059469..2059921) Staphylococcus carnosus subsp. carnosus TM300 7551012 YP_002635139.1 CDS arcC NC_012121.1 2060076 2061017 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2060076..2061017) Staphylococcus carnosus subsp. carnosus TM300 7551013 YP_002635140.1 CDS Sca_2050 NC_012121.1 2061010 2061795 R (P77297) Hypothetical protein yahE; Hypothetical protein; hypothetical protein complement(2061010..2061795) Staphylococcus carnosus subsp. carnosus TM300 7551405 YP_002635141.1 CDS Sca_2051 NC_012121.1 2061792 2063057 R (P77129) Hypothetical protein ylbE; Hypothetical protein; hypothetical protein complement(2061792..2063057) Staphylococcus carnosus subsp. carnosus TM300 7551014 YP_002635142.1 CDS fdrA NC_012121.1 2063057 2064808 R multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA complement(2063057..2064808) Staphylococcus carnosus subsp. carnosus TM300 7551015 YP_002635143.1 CDS allD NC_012121.1 2064824 2065873 R (P58408) Ureidoglycolate dehydrogenase (EC 1.1.1.154),InterPro: Malate/L-lactate dehydrogenase; Hypothetical protein; putative ureidoglycolate dehydrogenase complement(2064824..2065873) Staphylococcus carnosus subsp. carnosus TM300 7551567 YP_002635144.1 CDS allD NC_012121.1 2065977 2067008 R (O34736) Hypothetical oxidoreductase yjmC (EC 1.1.1.-),InterPro: Malate/L-lactate dehydrogenase; Hypothetical protein; putative ureidoglycolate dehydrogenase complement(2065977..2067008) Staphylococcus carnosus subsp. carnosus TM300 7551388 YP_002635145.1 CDS Sca_2055 NC_012121.1 2067025 2067813 R (P75713) Hypothetical protein ylbA; Hypothetical protein; hypothetical protein complement(2067025..2067813) Staphylococcus carnosus subsp. carnosus TM300 7551389 YP_002635146.1 CDS Sca_2056 NC_012121.1 2067839 2069071 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2067839..2069071) Staphylococcus carnosus subsp. carnosus TM300 7551016 YP_002635147.1 CDS Sca_2057 NC_012121.1 2069258 2069719 D (O35678) Monoglyceride lipase (EC 3.1.1.23),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein 2069258..2069719 Staphylococcus carnosus subsp. carnosus TM300 7551017 YP_002635148.1 CDS Sca_2058 NC_012121.1 2069725 2070093 D (Q86WA6) Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA); Hypothetical protein; hypothetical protein 2069725..2070093 Staphylococcus carnosus subsp. carnosus TM300 7551018 YP_002635149.1 CDS allB NC_012121.1 2070214 2071344 R (P77671) Allantoinase (EC 3.5.2.5),InterPro: Amidohydrolase; Conserved hypothetical protein; putative allantoinase complement(2070214..2071344) Staphylococcus carnosus subsp. carnosus TM300 7551019 YP_002635150.1 CDS Sca_2060 NC_012121.1 2071341 2071580 R Truncated ORF.,Local similarity to:,(P77671) Allantoinase (EC 3.5.2.5),InterPro: Dihydroorotase region; Hypothetical protein; hypothetical protein complement(2071341..2071580) Staphylococcus carnosus subsp. carnosus TM300 7551387 YP_002635151.1 CDS Sca_2061 NC_012121.1 2071570 2073057 R (P75712) Putative allantoin permease (Allantoin transport protein),InterPro: Permease for cytosine/purines uracil thiamine allantoin; Conserved hypothetical protein; allantoin permease complement(2071570..2073057) Staphylococcus carnosus subsp. carnosus TM300 7551020 YP_002635152.1 CDS Sca_2062 NC_012121.1 2073249 2074871 D similar to (O32138) Purine catabolism regulatory protein; Conserved hypothetical protein; hypothetical protein 2073249..2074871 Staphylococcus carnosus subsp. carnosus TM300 7551021 YP_002635153.1 CDS amaB NC_012121.1 2074999 2076243 D (Q57051) Protein HI0588,InterPro: Peptidase M20/M25/M40; Conserved hypothetical protein; putative N-carbamoyl-beta-alanine amidohydrolase 2074999..2076243 Staphylococcus carnosus subsp. carnosus TM300 7551022 YP_002635154.1 CDS Sca_2064 NC_012121.1 2076291 2076944 R similar to transcriptional regulator, MerR family,Incomplete alignment.,Similar to MerR family regulatory protein,(P32184) HTH-type transcriptional activator tipA; Hypothetical protein; hypothetical protein complement(2076291..2076944) Staphylococcus carnosus subsp. carnosus TM300 7551393 YP_002635155.1 CDS Sca_2065 NC_012121.1 2077289 2078224 D (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase),InterPro: NAD-dependent epimerase/dehydratase; Conserved hypothetical protein; putative UDP-glucose 4-epimerase 2077289..2078224 Staphylococcus carnosus subsp. carnosus TM300 7551023 YP_002635156.1 CDS Sca_2066 NC_012121.1 2078410 2079114 R Hypothetical protein; hypothetical protein complement(2078410..2079114) Staphylococcus carnosus subsp. carnosus TM300 7551024 YP_002635157.1 CDS Sca_2067 NC_012121.1 2079191 2081032 R (Q50644) Hypothetical protein Rv2577/MT2654,InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein complement(2079191..2081032) Staphylococcus carnosus subsp. carnosus TM300 7551025 YP_002635158.1 CDS nagA NC_012121.1 2081341 2082498 R (O34450) N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (GlcNAc 6-P deacetylase),InterPro: N-acetylglucosamine-6-phosphate deacetylase; Conserved hypothetical protein; putative N-acetylglucosamine-6-phosphate deacetylase complement(2081341..2082498) Staphylococcus carnosus subsp. carnosus TM300 7551026 YP_002635159.1 CDS Sca_2069 NC_012121.1 2082691 2083158 R (P17407) 21 kDa protein precursor (1.2 protein); Hypothetical protein; hypothetical protein complement(2082691..2083158) Staphylococcus carnosus subsp. carnosus TM300 7551842 YP_002635160.1 CDS Sca_2070 NC_012121.1 2083237 2083671 R (P75260) Hypothetical UPF0134 protein MPN138 (E07_orf166); Hypothetical protein; hypothetical protein complement(2083237..2083671) Staphylococcus carnosus subsp. carnosus TM300 7551027 YP_002635161.1 CDS Sca_2071 NC_012121.1 2083921 2084802 R (Q50648) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase) (KPR),InterPro: Ketopantoate reductase ApbA/PanE; Conserved hypothetical protein; 2-dehydropantoate 2-reductase complement(2083921..2084802) Staphylococcus carnosus subsp. carnosus TM300 7551028 YP_002635162.1 CDS panB NC_012121.1 2084870 2085682 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2084870..2085682 Staphylococcus carnosus subsp. carnosus TM300 7551029 YP_002635163.1 CDS panC NC_012121.1 2085679 2086539 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2085679..2086539 Staphylococcus carnosus subsp. carnosus TM300 7551899 YP_002635164.1 CDS panD NC_012121.1 2086532 2086915 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2086532..2086915 Staphylococcus carnosus subsp. carnosus TM300 7551900 YP_002635165.1 CDS Sca_2075 NC_012121.1 2087247 2088092 R low similarity to:,(P04188) Glutamyl endopeptidase precursor (EC 3.4.21.19) (Staphylococcal serine proteinase) (V8 proteinase) (Endoproteinase Glu-C); Hypothetical protein; hypothetical protein complement(2087247..2088092) Staphylococcus carnosus subsp. carnosus TM300 7551901 YP_002635166.1 CDS Sca_2076 NC_012121.1 2088657 2089127 D similar to:,(P25053) Regulatory protein tenI,InterPro: Thiamine monophosphate synthase; Hypothetical protein; hypothetical protein 2088657..2089127 Staphylococcus carnosus subsp. carnosus TM300 7551030 YP_002635167.1 CDS goxB NC_012121.1 2089131 2090258 D (O31616) Glycine oxidase (EC 1.4.3.19),InterPro: FAD dependent oxidoreductase; Conserved hypothetical protein; putative glycine oxidase 2089131..2090258 Staphylococcus carnosus subsp. carnosus TM300 7551031 YP_002635168.1 CDS Sca_2078 NC_012121.1 2090242 2090442 D similar to thiamin biosynthesis ThiS [KO:K03154],(P49535) Hypothetical 8.5 kDa protein ycf40 (ORF73),InterPro: ThiamineS; Hypothetical protein; hypothetical protein 2090242..2090442 Staphylococcus carnosus subsp. carnosus TM300 7551660 YP_002635169.1 CDS thiG NC_012121.1 2090444 2091211 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2090444..2091211 Staphylococcus carnosus subsp. carnosus TM300 7551032 YP_002635170.1 CDS Sca_2080 NC_012121.1 2091208 2092260 D (P12282) Molybdopterin biosynthesis protein moeB,InterPro: UBA/THIF-type NAD/FAD binding fold; Hypothetical protein; putative molybdopterin biosynthesis protein MoeB 2091208..2092260 Staphylococcus carnosus subsp. carnosus TM300 7552179 YP_002635171.1 CDS Sca_2081 NC_012121.1 2092418 2092639 R Hypothetical protein; hypothetical protein complement(2092418..2092639) Staphylococcus carnosus subsp. carnosus TM300 7551033 YP_002635172.1 CDS Sca_2082 NC_012121.1 2092954 2093406 D (P46908) Anaerobic regulatory protein,InterPro: Cyclic nucleotide-binding domain; Conserved hypothetical protein; putative transcriptional regulator protein 2092954..2093406 Staphylococcus carnosus subsp. carnosus TM300 7551034 YP_002635173.1 CDS Sca_2083 NC_012121.1 2093451 2094122 R (P46908) Anaerobic regulatory protein,InterPro: Cyclic nucleotide-binding domain; Conserved hypothetical protein; putative transcriptional regulator protein complement(2093451..2094122) Staphylococcus carnosus subsp. carnosus TM300 7551035 YP_002635174.1 CDS arcD NC_012121.1 2094403 2095833 R (Q46170) Arginine/ornithine antiporter,InterPro: Arginine/ornithine antiporter; Conserved hypothetical protein; putative arginine/ornithine antiporter complement(2094403..2095833) Staphylococcus carnosus subsp. carnosus TM300 7551036 YP_002635175.1 CDS arcA NC_012121.1 2096113 2097348 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(2096113..2097348) Staphylococcus carnosus subsp. carnosus TM300 7551408 YP_002635176.1 CDS arcA NC_012121.1 2097775 2099004 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(2097775..2099004) Staphylococcus carnosus subsp. carnosus TM300 7551403 YP_002635177.1 CDS Sca_2087 NC_012121.1 2099124 2099843 R Hypothetical protein; hypothetical protein complement(2099124..2099843) Staphylococcus carnosus subsp. carnosus TM300 7551404 YP_002635178.1 CDS vraB NC_012121.1 2099844 2100992 R (P77525) Probable beta-ketoadipyl CoA thiolase (EC 2.3.1.-),InterPro: Thiolase; Hypothetical protein; putative acetyl-CoA c-acetyltransferase complement(2099844..2100992) Staphylococcus carnosus subsp. carnosus TM300 7551037 YP_002635179.1 CDS vraA NC_012121.1 2100999 2102423 R (P58730) O-succinylbenzoate--CoA ligase (EC 6.2.1.26) (OSB-CoA synthetase) (O-succinylbenzoyl-CoA synthetase),InterPro: AMP-dependent synthetase and ligase; Conserved hypothetical protein; putative Co-A ligase complement(2100999..2102423) Staphylococcus carnosus subsp. carnosus TM300 7552297 YP_002635180.1 CDS Sca_2090 NC_012121.1 2102660 2103541 D (P09392) Glycerol-3-phosphate regulon repressor; Hypothetical protein; hypothetical protein 2102660..2103541 Staphylococcus carnosus subsp. carnosus TM300 7552296 YP_002635181.1 CDS Sca_2091 NC_012121.1 2103650 2104321 D (P60527) 2-haloalkanoic acid dehalogenase (EC 3.8.1.2) (L-2-haloacid dehalogenase) (Halocarboxylic acid halidohydrolase) (L-DEX) (Cryptic L-isomer-specific dehalogenase) (DhlS5I),InterPro: Haloacid dehalogenase-like hydrolase; Conserved hypothetical protein; putative 2-haloalkanoic acid dehalogenase 2103650..2104321 Staphylococcus carnosus subsp. carnosus TM300 7551038 YP_002635182.1 CDS Sca_2092 NC_012121.1 2104644 2106092 D similar to immunoglobulin G binding protein A precursor,(Q21313) Laminin-like protein K08C7.3 precursor,InterPro: Surface protein from Gram-positive cocci anchor region; Hypothetical protein; hypothetical protein 2104644..2106092 Staphylococcus carnosus subsp. carnosus TM300 7551039 YP_002635183.1 CDS Sca_2093 NC_012121.1 2106206 2106985 R similar to dehydrogenase/reductase,(P87219) Sorbitol utilization protein SOU1,InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; hypothetical protein complement(2106206..2106985) Staphylococcus carnosus subsp. carnosus TM300 7551040 YP_002635184.1 CDS Sca_2094 NC_012121.1 2107006 2108259 R (O52717) Ribitol transporter,InterPro: General substrate transporter,Major facilitator superfamily; Hypothetical protein; putative alpha-ketoglutarate permease complement(2107006..2108259) Staphylococcus carnosus subsp. carnosus TM300 7551041 YP_002635185.1 CDS xylB NC_012121.1 2108340 2109947 R (P44401) Xylulose kinase (EC 2.7.1.17) (Xylulokinase),InterPro: Carbohydrate kinase FGGY; Conserved hypothetical protein; putative xylulokinase complement(2108340..2109947) Staphylococcus carnosus subsp. carnosus TM300 7551042 YP_002635186.1 CDS Sca_2096 NC_012121.1 2110273 2111391 R (P37624) Hypothetical ABC transporter ATP-binding protein yhiH; Hypothetical protein; putative ABC transporter complement(2110273..2111391) Staphylococcus carnosus subsp. carnosus TM300 7552304 YP_002635187.1 CDS Sca_2097 NC_012121.1 2111381 2112115 R (P75776) Hypothetical ABC transporter ATP-binding protein ybhF; Conserved hypothetical protein; putative ABC transporter complement(2111381..2112115) Staphylococcus carnosus subsp. carnosus TM300 7551043 YP_002635188.1 CDS Sca_2098 NC_012121.1 2112261 2112782 R N terminal similar to rrf2 family protein, putative transcriptional regulator,(Q9R9M8) AAU3 protein precursor,InterPro: Protein of unknown function UPF0074; Hypothetical protein; hypothetical protein complement(2112261..2112782) Staphylococcus carnosus subsp. carnosus TM300 7551044 YP_002635189.1 CDS Sca_2099 NC_012121.1 2112977 2113528 R (O28938) Hypothetical protein AF1331; Hypothetical protein; hypothetical protein complement(2112977..2113528) Staphylococcus carnosus subsp. carnosus TM300 7551045 YP_002635190.1 CDS Sca_2100 NC_012121.1 2113806 2115170 D (P37062) NADH peroxidase (EC 1.11.1.1) (NPXase) (Npx),InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Conserved hypothetical protein; putative NADH oxidase 2113806..2115170 Staphylococcus carnosus subsp. carnosus TM300 7551046 YP_002635191.1 CDS Sca_2101 NC_012121.1 2115258 2116400 R similar to CsbB stress response protein,(P57022) Bactoprenol glucosyl transferase (EC 2.4.1.-),InterPro: Glycosyl transferase family 2; Hypothetical protein; hypothetical protein complement(2115258..2116400) Staphylococcus carnosus subsp. carnosus TM300 7551047 YP_002635192.1 CDS aldA NC_012121.1 2116876 2118372 R (P23240) Aldehyde dehydrogenase (EC 1.2.1.3),InterPro: Aldehyde dehydrogenase; Conserved hypothetical protein; putative aldehyde dehydrogenase complement(2116876..2118372) Staphylococcus carnosus subsp. carnosus TM300 7551048 YP_002635193.1 CDS aldA NC_012121.1 2118699 2120231 R (P37685) Aldehyde dehydrogenase B (EC 1.2.1.22) (Lactaldehyde dehydrogenase),InterPro: Aldehyde dehydrogenase; Hypothetical protein; putative aldehyde dehydrogenase complement(2118699..2120231) Staphylococcus carnosus subsp. carnosus TM300 7551384 YP_002635194.1 CDS apbA NC_012121.1 2120452 2121387 R (P77728) 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase) (KPR),InterPro: Ketopantoate reductase ApbA/PanE; Conserved hypothetical protein; putative 2-dehydropantoate 2-reductase complement(2120452..2121387) Staphylococcus carnosus subsp. carnosus TM300 7551385 YP_002635195.1 CDS Sca_2105 NC_012121.1 2121545 2122879 R (Q9UHI5) Large neutral amino acids transporter small subunit 2 (L-type amino acid transporter 2) (hLAT2),InterPro: Amino acid permease-associated region; Conserved hypothetical protein; putative amino acid permease complement(2121545..2122879) Staphylococcus carnosus subsp. carnosus TM300 7551395 YP_002635196.1 CDS Sca_2106 NC_012121.1 2123244 2123546 R (P26388) Putative colanic acid biosynthesis glycosyl transferase wcaL (EC 2.-.-.-); Hypothetical protein; hypothetical protein complement(2123244..2123546) Staphylococcus carnosus subsp. carnosus TM300 7551049 YP_002635197.1 CDS tagF2 NC_012121.1 2123583 2125790 R (P13485) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; putative teichoic acid biosynthesis protein complement(2123583..2125790) Staphylococcus carnosus subsp. carnosus TM300 7551050 YP_002635198.1 CDS tagD NC_012121.1 2126081 2126476 R (P27623) Glycerol-3-phosphate cytidylyltransferase (EC 2.7.7.39) (GCT) (Gro-PCT) (CDP-glycerol pyrophosphorylase) (Teichoic acid biosynthesis protein D),InterPro: Cytidylyltransferase; Conserved hypothetical protein; putative teichoic acid biosynthesis protein D complement(2126081..2126476) Staphylococcus carnosus subsp. carnosus TM300 7552163 YP_002635199.1 CDS tagF NC_012121.1 2126494 2128671 R (P13485) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; putative teichoic acid biosynthesis protein F complement(2126494..2128671) Staphylococcus carnosus subsp. carnosus TM300 7552160 YP_002635200.1 CDS tagE NC_012121.1 2128781 2130274 R (P13484) Probable poly(glycerol-phosphate) alpha-glucosyltransferase (EC 2.4.1.52) (Major teichoic acid biosynthesis protein E),InterPro: Glycosyl transferase group 1; Conserved hypothetical protein; putative teichoic acid biosynthesis protein E complement(2128781..2130274) Staphylococcus carnosus subsp. carnosus TM300 7552162 YP_002635201.1 CDS Sca_2111 NC_012121.1 2130489 2130851 R (P37349) Protein ycgC,InterPro: PTS system fructose subfamily IIA component; Hypothetical protein; phosphotransferase mannnose-specific family component IIA complement(2130489..2130851) Staphylococcus carnosus subsp. carnosus TM300 7552161 YP_002635202.1 CDS Sca_2112 NC_012121.1 2130854 2131432 R (P43550) Dihydroxyacetone kinase 2 (EC 2.7.1.29) (Glycerone kinase 2) (DHA kinase 2),InterPro: Dak phosphatase domain; Hypothetical protein; hypothetical protein complement(2130854..2131432) Staphylococcus carnosus subsp. carnosus TM300 7551051 YP_002635203.1 CDS Sca_2113 NC_012121.1 2131452 2132417 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(2131452..2132417) Staphylococcus carnosus subsp. carnosus TM300 7551052 YP_002635204.1 CDS Sca_2114 NC_012121.1 2132662 2132916 D Hypothetical protein; hypothetical protein 2132662..2132916 Staphylococcus carnosus subsp. carnosus TM300 7551053 YP_002635205.1 CDS phnA NC_012121.1 2132953 2133303 R (P16680) PhnA protein,InterPro: PhnA protein; Hypothetical protein; putative alkylphosphonate utilization operon protein PhnA complement(2132953..2133303) Staphylococcus carnosus subsp. carnosus TM300 7551054 YP_002635206.1 CDS Sca_2116 NC_012121.1 2133489 2135078 R (P51798) Chloride channel protein 7 (ClC-7); Conserved hypothetical protein; putative ABC transporter membrane-spanning protein complement(2133489..2135078) Staphylococcus carnosus subsp. carnosus TM300 7551938 YP_002635207.1 CDS Sca_2117 NC_012121.1 2135080 2135979 R (O52618) Nod factor export ATP-binding protein I (Nodulation ATP-binding protein I),InterPro: ABC transporter; Conserved hypothetical protein; putative ABC transporter ATP-binding protein complement(2135080..2135979) Staphylococcus carnosus subsp. carnosus TM300 7551055 YP_002635208.1 CDS Sca_2118 NC_012121.1 2136125 2136556 R Hypothetical protein; hypothetical protein complement(2136125..2136556) Staphylococcus carnosus subsp. carnosus TM300 7551056 YP_002635209.1 CDS Sca_2119 NC_012121.1 2136553 2136759 R Hypothetical protein; hypothetical protein complement(2136553..2136759) Staphylococcus carnosus subsp. carnosus TM300 7551057 YP_002635210.1 CDS Sca_2120 NC_012121.1 2137080 2138447 D Similar to cycA, D-serine/D-alanine/glycine transporter (Pseudomonas putida),(P96704) Hypothetical transport protein ydgF,InterPro: Amino acid permease-associated region; Hypothetical protein; putative amino acid transporter 2137080..2138447 Staphylococcus carnosus subsp. carnosus TM300 7551058 YP_002635211.1 CDS ddh NC_012121.1 2138582 2139574 R catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase complement(2138582..2139574) Staphylococcus carnosus subsp. carnosus TM300 7551059 YP_002635212.1 CDS Sca_2122 NC_012121.1 2139974 2140267 R (P23302) Integration host factor alpha-subunit (IHF-alpha); Hypothetical protein; hypothetical protein complement(2139974..2140267) Staphylococcus carnosus subsp. carnosus TM300 7551517 YP_002635213.1 CDS Sca_2123 NC_012121.1 2140323 2140799 R (O05227) Na(+)/H(+) antiporter subunit G (Multiple resistance and pH homeostasis protein G) (Mrp complex subunit G),InterPro: Na+/H+ antiporter subunit; Hypothetical protein; putative Na(+)/H(+) antiporter subunit G complement(2140323..2140799) Staphylococcus carnosus subsp. carnosus TM300 7551060 YP_002635214.1 CDS Sca_2124 NC_012121.1 2140777 2141073 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F complement(2140777..2141073) Staphylococcus carnosus subsp. carnosus TM300 7551061 YP_002635215.1 CDS Sca_2125 NC_012121.1 2141070 2141558 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(2141070..2141558) Staphylococcus carnosus subsp. carnosus TM300 7551062 YP_002635216.1 CDS Sca_2126 NC_012121.1 2141558 2143054 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D complement(2141558..2143054) Staphylococcus carnosus subsp. carnosus TM300 7551063 YP_002635217.1 CDS Sca_2127 NC_012121.1 2143047 2143394 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(2143047..2143394) Staphylococcus carnosus subsp. carnosus TM300 7551064 YP_002635218.1 CDS Sca_2128 NC_012121.1 2143391 2143816 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B complement(2143391..2143816) Staphylococcus carnosus subsp. carnosus TM300 7551065 YP_002635219.1 CDS Sca_2129 NC_012121.1 2143803 2146277 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit A complement(2143803..2146277) Staphylococcus carnosus subsp. carnosus TM300 7551066 YP_002635220.1 CDS Sca_2130 NC_012121.1 2146363 2146956 R (Q9JV76) Tyrosine recombinase xerD,InterPro: Phage integrase; Hypothetical protein; putative phage integrase family protein complement(2146363..2146956) Staphylococcus carnosus subsp. carnosus TM300 7551067 YP_002635221.1 CDS Sca_2131 NC_012121.1 2147208 2147927 R local similarity to (P75247) ClpB protein; Hypothetical protein; hypothetical protein complement(2147208..2147927) Staphylococcus carnosus subsp. carnosus TM300 7551068 YP_002635222.1 CDS Sca_2132 NC_012121.1 2148133 2149341 D slightly similar to:,(O43053) Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-13-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase); Hypothetical protein; hypothetical protein 2148133..2149341 Staphylococcus carnosus subsp. carnosus TM300 7551069 YP_002635223.1 CDS Sca_2133 NC_012121.1 2149345 2150481 D Hypothetical protein; hypothetical protein 2149345..2150481 Staphylococcus carnosus subsp. carnosus TM300 7551070 YP_002635224.1 CDS Sca_2134 NC_012121.1 2150929 2151585 R Hypothetical protein; hypothetical protein complement(2150929..2151585) Staphylococcus carnosus subsp. carnosus TM300 7551071 YP_002635225.1 CDS fdh NC_012121.1 2152258 2153268 D Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase 2152258..2153268 Staphylococcus carnosus subsp. carnosus TM300 7551072 YP_002635226.1 CDS Sca_2136 NC_012121.1 2153452 2154237 R putative hydrolase,(Q8R164) Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase) (Biphenyl hydrolase-like protein),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein complement(2153452..2154237) Staphylococcus carnosus subsp. carnosus TM300 7551566 YP_002635227.1 CDS Sca_2137 NC_012121.1 2154367 2155233 R (Q45581) Putative HTH-type transcriptional regulator ybbH,InterPro: Sugar isomerase (SIS); Hypothetical protein; putative RpiR family transcriptional regulator complement(2154367..2155233) Staphylococcus carnosus subsp. carnosus TM300 7551073 YP_002635228.1 CDS Sca_2138 NC_012121.1 2155237 2156712 R (Q9KVD9) PTS system sucrose-specific IIBC component (EIIBC-Scr) (Sucrose-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Scr),InterPro: Phosphotransferase system EIIC; Conserved hypothetical protein; putative PTS system, IIBC components complement(2155237..2156712) Staphylococcus carnosus subsp. carnosus TM300 7551074 YP_002635229.1 CDS Sca_2139 NC_012121.1 2156725 2157609 R (Q8ZCP8) Hypothetical protein YPO2925/Y1305/YP2532,InterPro: Glucokinase regulatory-like protein; Hypothetical protein; putative glucokinase regulatory protein complement(2156725..2157609) Staphylococcus carnosus subsp. carnosus TM300 7551075 YP_002635230.1 CDS Sca_2140 NC_012121.1 2157599 2158663 R InterPro: Bacterial protein of unknown function DUF871; Hypothetical protein; hypothetical protein complement(2157599..2158663) Staphylococcus carnosus subsp. carnosus TM300 7551076 YP_002635231.1 CDS Sca_2141 NC_012121.1 2158939 2159292 R Hypothetical protein; hypothetical protein complement(2158939..2159292) Staphylococcus carnosus subsp. carnosus TM300 7551077 YP_002635232.1 CDS fmdA NC_012121.1 2159485 2160678 D (Q50228) Formamidase (EC 3.5.1.49) (Formamide amidohydrolase),InterPro: Acetamidase/Formamidase; Hypothetical protein; putative formamidase 2159485..2160678 Staphylococcus carnosus subsp. carnosus TM300 7551078 YP_002635233.1 CDS Sca_2143 NC_012121.1 2161482 2162189 R (P32157) Hypothetical protein yiiM,InterPro: MOSC domain; Hypothetical protein; hypothetical protein complement(2161482..2162189) Staphylococcus carnosus subsp. carnosus TM300 7551579 YP_002635234.1 CDS fda NC_012121.1 2162356 2163246 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2162356..2163246 Staphylococcus carnosus subsp. carnosus TM300 7551079 YP_002635235.1 CDS Sca_2145 NC_012121.1 2163619 2164602 D similar to low temperature requirement A protein; Hypothetical protein; hypothetical protein 2163619..2164602 Staphylococcus carnosus subsp. carnosus TM300 7551565 YP_002635236.1 CDS flaR NC_012121.1 2164657 2165169 R (Q9YDD5) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine monophosphate kinase) (CMP kinase); Hypothetical protein; putative DNA topology modulation protein FlaR complement(2164657..2165169) Staphylococcus carnosus subsp. carnosus TM300 7551080 YP_002635237.1 CDS Sca_2147 NC_012121.1 2165370 2168240 R (P24125) 51.5 kDa protein,InterPro: DEAD/DEAH box helicase; Hypothetical protein; putative helicase complement(2165370..2168240) Staphylococcus carnosus subsp. carnosus TM300 7551578 YP_002635238.1 CDS Sca_2148 NC_012121.1 2168246 2168638 R (P08337) Mutator mutT protein (78-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) (EC 3.6.1.-) (dGTP pyrophosphohydrolase),InterPro: NUDIX hydrolase; Hypothetical protein; putative mutator protein mutT complement(2168246..2168638) Staphylococcus carnosus subsp. carnosus TM300 7551081 YP_002635239.1 CDS Sca_2149 NC_012121.1 2168823 2169389 R (O66043) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CL synthase); Hypothetical protein; hypothetical protein complement(2168823..2169389) Staphylococcus carnosus subsp. carnosus TM300 7551082 YP_002635240.1 CDS Sca_2150 NC_012121.1 2169476 2171644 R similar to S. epidermidis teichoic acid biosynthesis protein F [Staphylococcus epidermidis ATCC 12228],Blastscore: Expect = 0.0 Identities = 479/720 (66%), Positives = 597/720 (82%),(P13485) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; putative teichoic acid biosynthesis protein F complement(2169476..2171644) Staphylococcus carnosus subsp. carnosus TM300 7551083 YP_002635241.1 CDS Sca_2151 NC_012121.1 2171966 2174596 R (O06079) Putative membrane protein mmpL11,InterPro: Sterol-sensing 5TM box; Hypothetical protein; putative antibiotic transport-associated protein complement(2171966..2174596) Staphylococcus carnosus subsp. carnosus TM300 7551084 YP_002635242.1 CDS Sca_2152 NC_012121.1 2174747 2175322 D (P46330) Putative HTH-type transcriptional regulator yxbF; Hypothetical protein; TetR family transcriptional regulator 2174747..2175322 Staphylococcus carnosus subsp. carnosus TM300 7551085 YP_002635243.1 CDS Sca_2153 NC_012121.1 2175492 2177315 D local similarity to:,(Q8PDD7) Phosphoglycerol transferase I (EC 2.7.8.20) (Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase),InterPro: Sulfatase; Hypothetical protein; hypothetical protein 2175492..2177315 Staphylococcus carnosus subsp. carnosus TM300 7551086 YP_002635244.1 CDS Sca_2154 NC_012121.1 2177400 2178947 R (P37781) Putative O-antigen transporter,InterPro: Polysaccharide biosynthesis protein; Hypothetical protein; hypothetical protein complement(2177400..2178947) Staphylococcus carnosus subsp. carnosus TM300 7551087 YP_002635245.1 CDS Sca_2155 NC_012121.1 2178963 2180246 R Hypothetical protein; hypothetical protein complement(2178963..2180246) Staphylococcus carnosus subsp. carnosus TM300 7551088 YP_002635246.1 CDS Sca_2156 NC_012121.1 2180672 2181937 R similar to Amylovoran biosynthesis AmsK [Bacillus cereus ATCC 14579] gi|29898862|gb|AAP12133.1|,local similarity to:,(O24301) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2),InterPro: Glycosyl transferase group 1; Hypothetical protein; hypothetical protein complement(2180672..2181937) Staphylococcus carnosus subsp. carnosus TM300 7551089 YP_002635247.1 CDS Sca_2157 NC_012121.1 2181956 2182546 R local similarity to:,(P26406) Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) (Galactosyl-P-P-undecaprenol synthetase),InterPro: Bacterial sugar transferase; Hypothetical protein; hypothetical protein complement(2181956..2182546) Staphylococcus carnosus subsp. carnosus TM300 7551090 YP_002635248.1 CDS Sca_2158 NC_012121.1 2182524 2183435 R (Q58455) Hypothetical protein MJ1055,InterPro: NAD-dependent epimerase/dehydratase; Hypothetical protein; putative UDP-glucose 4-epimerase complement(2182524..2183435) Staphylococcus carnosus subsp. carnosus TM300 7551091 YP_002635249.1 CDS Sca_2159 NC_012121.1 2183436 2184545 R (Q8RG86) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain); Hypothetical protein; hypothetical protein complement(2183436..2184545) Staphylococcus carnosus subsp. carnosus TM300 7551092 YP_002635250.1 CDS Sca_2160 NC_012121.1 2184542 2185429 R (Q58466) Hypothetical protein MJ1066,InterPro: DegT/DnrJ/EryC1/StrS aminotransferase; Hypothetical protein; hypothetical protein complement(2184542..2185429) Staphylococcus carnosus subsp. carnosus TM300 7551093 YP_002635251.1 CDS Sca_2161 NC_012121.1 2185411 2185746 R (P39623) Spore coat polysaccharide biosynthesis protein spsC; Hypothetical protein; hypothetical protein complement(2185411..2185746) Staphylococcus carnosus subsp. carnosus TM300 7551094 YP_002635252.1 CDS cudB NC_012121.1 2186280 2187968 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2186280..2187968) Staphylococcus carnosus subsp. carnosus TM300 7551095 YP_002635253.1 CDS cudA NC_012121.1 2188134 2189627 R (P71016) Betaine aldehyde dehydrogenase (EC 1.2.1.8) (BADH),InterPro: Aldehyde dehydrogenase; Conserved hypothetical protein; glycine betaine aldehyde dehydrogenase complement(2188134..2189627) Staphylococcus carnosus subsp. carnosus TM300 7551492 YP_002635254.1 CDS cudC NC_012121.1 2189848 2190393 D (P71015) Hypothetical protein yuaC (ORF2); Conserved hypothetical protein; putative transcriptional regulator of cud operon 2189848..2190393 Staphylococcus carnosus subsp. carnosus TM300 7551491 YP_002635255.1 CDS cudT NC_012121.1 2190492 2192147 R (P76252) Probable transport protein yeaV,InterPro: BCCT transporter; Conserved hypothetical protein; choline transporter complement(2190492..2192147) Staphylococcus carnosus subsp. carnosus TM300 7551493 YP_002635256.1 CDS Sca_2166 NC_012121.1 2192665 2194311 R (P23234) Indole-3-pyruvate decarboxylase (EC 4.1.1.74) (Indolepyruvate decarboxylase),InterPro: Pyruvate decarboxylase; Conserved hypothetical protein; putative indole-3-pyruvate decarboxylase complement(2192665..2194311) Staphylococcus carnosus subsp. carnosus TM300 7551494 YP_002635257.1 CDS Sca_2167 NC_012121.1 2194507 2194956 R (P62087) Putative HTH-type transcriptional regulator SA2060,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; putative regulatory protein complement(2194507..2194956) Staphylococcus carnosus subsp. carnosus TM300 7551096 YP_002635258.1 CDS Sca_2168 NC_012121.1 2195600 2195866 R Hypothetical protein; hypothetical protein complement(2195600..2195866) Staphylococcus carnosus subsp. carnosus TM300 7551097 YP_002635259.1 CDS Sca_2169 NC_012121.1 2195966 2197102 D (P54432) Hypothetical protein yrkE,InterPro: Rhodanese-like; Conserved hypothetical protein; hypothetical protein 2195966..2197102 Staphylococcus carnosus subsp. carnosus TM300 7551098 YP_002635260.1 CDS Sca_2170 NC_012121.1 2197207 2198130 R (P76049) Hypothetical protein ycjY,InterPro: Esterase/lipase/thioesterase,COG1073: Hydrolases of the alpha/beta superfamily; Conserved hypothetical protein; hypothetical protein complement(2197207..2198130) Staphylococcus carnosus subsp. carnosus TM300 7551099 YP_002635261.1 CDS Sca_2171 NC_012121.1 2198279 2198839 D weak similarity to transcriptional regulator tetR family; Hypothetical protein; hypothetical protein 2198279..2198839 Staphylococcus carnosus subsp. carnosus TM300 7551100 YP_002635262.1 CDS Sca_2172 NC_012121.1 2199106 2199219 D Hypothetical protein; hypothetical protein 2199106..2199219 Staphylococcus carnosus subsp. carnosus TM300 7551101 YP_002635263.1 CDS Sca_2173 NC_012121.1 2199406 2200566 R (Q01911) Tetracycline resistance protein from transposon Tn4351/Tn4400,InterPro: Flavoprotein monooxygenase; Hypothetical protein; putative monooxygenase complement(2199406..2200566) Staphylococcus carnosus subsp. carnosus TM300 7551102 YP_002635264.1 CDS Sca_2174 NC_012121.1 2200603 2201187 R (Q46872) Hypothetical protein yqjI,InterPro: Transcriptional regulator PadR-like family; Hypothetical protein; hypothetical protein complement(2200603..2201187) Staphylococcus carnosus subsp. carnosus TM300 7551103 YP_002635265.1 CDS Sca_2175 NC_012121.1 2201345 2202310 R (P37829) Fructokinase (EC 2.7.1.4),InterPro: Carbohydrate kinase PfkB; Hypothetical protein; putative fructokinase complement(2201345..2202310) Staphylococcus carnosus subsp. carnosus TM300 7551104 YP_002635266.1 CDS Sca_2176 NC_012121.1 2202382 2202999 R similar to transcriptional regulator tetR-family,(P46330) Putative HTH-type transcriptional regulator yxbF,InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; putative transcriptional regulator complement(2202382..2202999) Staphylococcus carnosus subsp. carnosus TM300 7551105 YP_002635267.1 CDS Sca_2177 NC_012121.1 2203165 2204451 D putative membrane protein,similar to phage infection protein precursor; Conserved hypothetical protein; hypothetical protein 2203165..2204451 Staphylococcus carnosus subsp. carnosus TM300 7551106 YP_002635268.1 CDS Sca_2178 NC_012121.1 2204558 2207599 R (P13485) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase,C-terminus similar to poly-alpha-glucosyltransferase; Hypothetical protein; hypothetical protein complement(2204558..2207599) Staphylococcus carnosus subsp. carnosus TM300 7551107 YP_002635269.1 CDS Sca_2179 NC_012121.1 2207638 2208273 R (Q05852) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase) (General stress protein 33) (GSP33),InterPro: Nucleotidyl transferase; Hypothetical protein; UDP-glucose pyrophosphorylase complement(2207638..2208273) Staphylococcus carnosus subsp. carnosus TM300 7551108 YP_002635270.1 CDS Sca_2180 NC_012121.1 2208305 2208493 R (Q05852) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase) (General stress protein 33) (GSP33); Hypothetical protein; UTP--glucose-1-phosphate uridylyltransferase complement(2208305..2208493) Staphylococcus carnosus subsp. carnosus TM300 7551109 YP_002635271.1 CDS Sca_2181 NC_012121.1 2208982 2211483 D similar to teichoic acid biosynthesis protein F,(P13485) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F),InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; hypothetical protein 2208982..2211483 Staphylococcus carnosus subsp. carnosus TM300 7551110 YP_002635272.1 CDS Sca_2182 NC_012121.1 2211543 2212628 R similar to icaC,(Q9FF17) Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-13-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase),InterPro: Acyltransferase 3 family; Hypothetical protein; hypothetical protein complement(2211543..2212628) Staphylococcus carnosus subsp. carnosus TM300 7551111 YP_002635273.1 CDS Sca_2183 NC_012121.1 2213268 2214356 D similar to aminoterminal part (aa 1-311) of COG1887: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Pediococcus pentosaceus ATCC 25745] ,InterPro: Glycosyl transferase family 2; Hypothetical protein; hypothetical protein 2213268..2214356 Staphylococcus carnosus subsp. carnosus TM300 7551112 YP_002635274.1 CDS Sca_2184 NC_012121.1 2214365 2216611 D similar to carboxyterminal part (aa 334-1110) of COG1887: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Pediococcus pentosaceus ATCC 25745],InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Hypothetical protein; hypothetical protein 2214365..2216611 Staphylococcus carnosus subsp. carnosus TM300 7551113 YP_002635275.1 CDS Sca_2185 NC_012121.1 2217150 2218244 R similar to icaC,InterPro: Acyltransferase 3 family; Conserved hypothetical protein; hypothetical protein complement(2217150..2218244) Staphylococcus carnosus subsp. carnosus TM300 7551114 YP_002635276.1 CDS Sca_2186 NC_012121.1 2218521 2219465 R Hypothetical protein; hypothetical protein complement(2218521..2219465) Staphylococcus carnosus subsp. carnosus TM300 7551115 YP_002635277.1 CDS Sca_2187 NC_012121.1 2219795 2220538 R (Q05587) Regulatory protein pocR,InterPro: Helix-turn-helix AraC type; Hypothetical protein; hypothetical protein complement(2219795..2220538) Staphylococcus carnosus subsp. carnosus TM300 7551116 YP_002635278.1 CDS Sca_2188 NC_012121.1 2221000 2221740 R (P77538) Hypothetical protein yfhR,InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein complement(2221000..2221740) Staphylococcus carnosus subsp. carnosus TM300 7551117 YP_002635279.1 CDS Sca_2189 NC_012121.1 2222108 2222953 R (Q8ZRN1) D-methionine-binding lipoprotein metQ precursor,InterPro: NLPA lipoprotein,similar to lactococcal lipoprotein; Conserved hypothetical protein; hypothetical protein complement(2222108..2222953) Staphylococcus carnosus subsp. carnosus TM300 7552250 YP_002635280.1 CDS Sca_2190 NC_012121.1 2222977 2223636 R (Q9KTJ6) Probable D-methionine transport system permease protein metI,InterPro: Binding-protein-dependent transport systems inner membrane component; Conserved hypothetical protein; putative ABC transporter permease complement(2222977..2223636) Staphylococcus carnosus subsp. carnosus TM300 7551119 YP_002635281.1 CDS Sca_2191 NC_012121.1 2223638 2224654 R (Q8X7Z9) D-methionine transport ATP-binding protein metN,InterPro: ABC transporter; Conserved hypothetical protein; putative ABC transporter ATP-binding protein complement(2223638..2224654) Staphylococcus carnosus subsp. carnosus TM300 7551120 YP_002635282.1 CDS Sca_1292a NC_012121.1 <2225509 2238240 R Note: Signal peptide predicted by SignalP 3.0: Most likely cleavage site between pos. 47 and 48: AEA-AE. Signal pepetide reveals SIRK-Motif (aa 20-23).,LPXTG-Motif: aa 4210-4214; Hypothetical protein; putative glycine-rich cell wall surface anchor protein complement(<2225509..2238240) Staphylococcus carnosus subsp. carnosus TM300 7551121 YP_002635283.1 CDS Sca_2193 NC_012121.1 2238766 2239791 D (P04395) DNA-3-methyladenine glycosylase II (EC 3.2.2.21) (3-methyladenine-DNA glycosylase II inducible) (TAG II) (DNA-3-methyladenine glycosidase II),InterPro: HhH-GPD; Hypothetical protein; hypothetical protein 2238766..2239791 Staphylococcus carnosus subsp. carnosus TM300 7552245 YP_002635284.1 CDS Sca_2194 NC_012121.1 2239846 2241198 R (P60552) Guanylate kinase (EC 2.7.4.8) (GMP kinase); Conserved hypothetical protein; hypothetical protein complement(2239846..2241198) Staphylococcus carnosus subsp. carnosus TM300 7551122 YP_002635285.1 CDS Sca_2195 NC_012121.1 2241191 2241841 R (O05083) Putative glycosyl transferase HI1698 (EC 2.-.-.-),InterPro: Glycosyl transferase group 1; Hypothetical protein; hypothetical protein complement(2241191..2241841) Staphylococcus carnosus subsp. carnosus TM300 7551123 YP_002635286.1 CDS Sca_2196 NC_012121.1 2241965 2242714 R (O89107) Deoxyribonuclease gamma precursor (EC 3.1.21.-) (DNase gamma) (Deoxyribonuclease I-like 3) (DNaseY); Hypothetical protein; hypothetical protein complement(2241965..2242714) Staphylococcus carnosus subsp. carnosus TM300 7551124 YP_002635287.1 CDS Sca_2197 NC_012121.1 2242731 2245121 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(2242731..2245121) Staphylococcus carnosus subsp. carnosus TM300 7551125 YP_002635288.1 CDS Sca_2198 NC_012121.1 2245123 2245620 R (P52427) Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3) (Proteasome 27 kDa subunit); Hypothetical protein; hypothetical protein complement(2245123..2245620) Staphylococcus carnosus subsp. carnosus TM300 7551126 YP_002635289.1 CDS Sca_2199 NC_012121.1 2245626 2247158 R (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1) (DNA-PKcs) (DNPK1) (p460); Hypothetical protein; hypothetical protein complement(2245626..2247158) Staphylococcus carnosus subsp. carnosus TM300 7551127 YP_002635290.1 CDS Sca_2200 NC_012121.1 2247148 2248698 R (Q9ULL1) Pleckstrin homology domain containing family G member 1 (Fragment); Conserved hypothetical protein; hypothetical protein complement(2247148..2248698) Staphylococcus carnosus subsp. carnosus TM300 7551128 YP_002635291.1 CDS secY NC_012121.1 2248813 2249925 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2248813..2249925) Staphylococcus carnosus subsp. carnosus TM300 7551129 YP_002635292.1 CDS Sca_2202 NC_012121.1 2250006 2256845 R Similar to C-terminal part (aa 1303-3607) of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE03635): 3608 aa,Note: LPXTG-Motif (aa 2238-2242); Hypothetical protein; hypothetical protein complement(2250006..2256845) Staphylococcus carnosus subsp. carnosus TM300 7551130 YP_002635293.1 CDS Sca_2202a NC_012121.1 2256842 >2260339 R Similar to internal part (aa 229-1302) of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE03635); Hypothetical protein; hypothetical protein complement(2256842..>2260339) Staphylococcus carnosus subsp. carnosus TM300 7551131 YP_002635294.1 CDS Sca_2207 NC_012121.1 2260340 2261068 R (P27470) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I) (Dextransucrase) (Sucrose 6-glucosyltransferase),Similar to N-terminal part (aa 1-227) of unnamed protein product [Staphylococcus haemolyticus JCSC1435] (BAE03635): 3608 aa; Hypothetical protein; hypothetical protein complement(2260340..2261068) Staphylococcus carnosus subsp. carnosus TM300 7551132 YP_002635295.1 CDS Sca_2208 NC_012121.1 2261375 2262682 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(2261375..2262682) Staphylococcus carnosus subsp. carnosus TM300 7551133 YP_002635296.1 CDS Sca_2209 NC_012121.1 2263020 2263217 D Hypothetical protein; hypothetical protein 2263020..2263217 Staphylococcus carnosus subsp. carnosus TM300 7551134 YP_002635297.1 CDS katE/B NC_012121.1 2263384 2265396 R (P42234) Catalase 2 (EC 1.11.1.6),InterPro: Catalase; Conserved hypothetical protein; putative catalase complement(2263384..2265396) Staphylococcus carnosus subsp. carnosus TM300 7551135 YP_002635298.1 CDS Sca_2211 NC_012121.1 2265625 2266413 R (P42966) Hypothetical UPF0317 protein ycsI; Hypothetical protein; hypothetical protein complement(2265625..2266413) Staphylococcus carnosus subsp. carnosus TM300 7551726 YP_002635299.1 CDS tatA NC_012121.1 2267595 >2267816 D Hypothetical protein; putative sec-independent protein translocase 2267595..>2267816 Staphylococcus carnosus subsp. carnosus TM300 7551136 YP_002635300.1 CDS tatC NC_012121.1 2267881 2268594 D similar to Sec-independent protein translocase protein tatC, Escherichia coli, 258AA, Expect = 2e-25,Identities = 75/228 (32%), Positives = 121/228 (53%),Gaps = 6/228 (2%),(O05523) Hypothetical protein ydiJ,InterPro: Sec-independent periplasmic protein translocase; High confidence in function and specificity; putative sec-independent protein translocase 2267881..2268594 Staphylococcus carnosus subsp. carnosus TM300 7552167 YP_002635301.1 CDS Sca_2213 NC_012121.1 2268646 2270373 R (P39595) Hypothetical protein ywbL precursor,putative membrane protein; Hypothetical protein; hypothetical protein complement(2268646..2270373) Staphylococcus carnosus subsp. carnosus TM300 7552168 YP_002635302.1 CDS Sca_2214 NC_012121.1 2270354 2271577 R (P39597) Hypothetical protein ywbN precursor,InterPro: Tat-translocated enzyme; Hypothetical protein; putative Tat-translocated protein complement(2270354..2271577) Staphylococcus carnosus subsp. carnosus TM300 7551137 YP_002635303.1 CDS Sca_2215 NC_012121.1 2271574 2272428 R (P75902) Protein ycdO,InterPro: Protein of unknown function DUF451,putative lipoprotein; Hypothetical protein; hypothetical protein complement(2271574..2272428) Staphylococcus carnosus subsp. carnosus TM300 7551138 YP_002635304.1 CDS Sca_2216 NC_012121.1 2272821 2274275 R similar to multidrug resistance protein,(P54585) Hypothetical transport protein yhcA,InterPro: General substrate transporter; Hypothetical protein; hypothetical protein complement(2272821..2274275) Staphylococcus carnosus subsp. carnosus TM300 7551139 YP_002635305.1 CDS Sca_2217 NC_012121.1 2274458 2276071 R (Q58746) Hypothetical protein MJ1351,InterPro: Ferredoxin-dependent glutamate synthase; Hypothetical protein; putative glutamate synthase (ferredoxin) complement(2274458..2276071) Staphylococcus carnosus subsp. carnosus TM300 7551140 YP_002635306.1 CDS Sca_2218 NC_012121.1 2276482 2277186 D (P25145) Hypothetical oxidoreductase Lmo0432 (EC 1.-.-.-) (ORFA),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative short chain dehydrogenase 2276482..2277186 Staphylococcus carnosus subsp. carnosus TM300 7551141 YP_002635307.1 CDS Sca_2219 NC_012121.1 2277314 2277499 R Hypothetical protein; hypothetical protein complement(2277314..2277499) Staphylococcus carnosus subsp. carnosus TM300 7551142 YP_002635308.1 CDS Sca_2220 NC_012121.1 2277641 2278780 D Hypothetical protein; hypothetical protein 2277641..2278780 Staphylococcus carnosus subsp. carnosus TM300 7551143 YP_002635309.1 CDS Sca_2221 NC_012121.1 2278838 2279383 R (P49687) Nucleoporin NUP145 (Nuclear pore protein NUP145); Hypothetical protein; hypothetical protein complement(2278838..2279383) Staphylococcus carnosus subsp. carnosus TM300 7551144 YP_002635310.1 CDS Sca_2222 NC_012121.1 2279571 2280566 R (P50494) Duffy receptor gamma form precursor (Erythrocyte binding protein); Hypothetical protein; hypothetical protein complement(2279571..2280566) Staphylococcus carnosus subsp. carnosus TM300 7551145 YP_002635311.1 CDS bioA NC_012121.1 2280742 2282085 R (O66557) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (78-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase),InterPro: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Hypothetical protein; putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2280742..2282085) Staphylococcus carnosus subsp. carnosus TM300 7551146 YP_002635312.1 CDS bioD NC_012121.1 2282093 2282767 R (Q8CQD8) Dethiobiotin synthetase (EC 6.3.3.3) (Dethiobiotin synthase) (DTB synthetase) (DTBS),InterPro: Cobyrinic acid ac-diamide synthase; Hypothetical protein; putative dethiobiotin synthetase complement(2282093..2282767) Staphylococcus carnosus subsp. carnosus TM300 7551442 YP_002635313.1 CDS bioY NC_012121.1 2282748 2283311 R (P22819) Protein bioY,InterPro: BioY protein; Hypothetical protein; putative biotin synthase complement(2282748..2283311) Staphylococcus carnosus subsp. carnosus TM300 7551444 YP_002635314.1 CDS Sca_2226 NC_012121.1 2283570 2284598 D (Q8TDX5) 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45),InterPro: Amidohydrolase 2; Hypothetical protein; hypothetical protein 2283570..2284598 Staphylococcus carnosus subsp. carnosus TM300 7551445 YP_002635315.1 CDS Sca_2227 NC_012121.1 2284820 2285500 R (P25052) Transcriptional activator tenA,InterPro: TENA/THI-4 protein; Hypothetical protein; putative transcriptional activator TenA complement(2284820..2285500) Staphylococcus carnosus subsp. carnosus TM300 7551147 YP_002635316.1 CDS Sca_2228 NC_012121.1 2285530 2286384 R (Q9CBY2) Trigger factor (TF),InterPro: Patatin; Hypothetical protein; hypothetical protein complement(2285530..2286384) Staphylococcus carnosus subsp. carnosus TM300 7551148 YP_002635317.1 CDS Sca_2229 NC_012121.1 2286419 2286922 R (P30536) Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial benzodiazepine receptor),InterPro: TspO/MBR-related protein; Hypothetical protein; hypothetical protein complement(2286419..2286922) Staphylococcus carnosus subsp. carnosus TM300 7551149 YP_002635318.1 CDS Sca_2230 NC_012121.1 2287748 2288020 D Truncated ORF,Only local alignments to,(P50186) NaeI very-short-patch-repair endonuclease (EC 3.1.-.-) (V.NaeI),InterPro: DNA mismatch endonuclease vsr; Hypothetical protein; hypothetical protein 2287748..2288020 Staphylococcus carnosus subsp. carnosus TM300 7551150 YP_002635319.1 CDS Sca_2231 NC_012121.1 2288115 2289737 R (Q9L9D7) Cocaine esterase (EC 3.1.1.-),InterPro: Peptidase S15; Hypothetical protein; hypothetical protein complement(2288115..2289737) Staphylococcus carnosus subsp. carnosus TM300 7551151 YP_002635320.1 CDS Sca_2232 NC_012121.1 2289906 2290484 D (P46330) Putative HTH-type transcriptional regulator yxbF,InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; putative DNA-binding protein 2289906..2290484 Staphylococcus carnosus subsp. carnosus TM300 7551152 YP_002635321.1 CDS Sca_2233 NC_012121.1 2290557 2291258 R (Q96NR8) Retinol dehydrogenase 12 (EC 1.1.1.-),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative short chain dehydrogenase complement(2290557..2291258) Staphylococcus carnosus subsp. carnosus TM300 7551153 YP_002635322.1 CDS Sca_2234 NC_012121.1 2291271 2291813 R (Q59431) HTH-type transcriptional regulator uidR (Uid operon repressor) (Gus operon repressor),InterPro: Bacterial regulatory protein TetR HTH motif; Hypothetical protein; TetR family transcriptional regulator complement(2291271..2291813) Staphylococcus carnosus subsp. carnosus TM300 7551154 YP_002635323.1 CDS Sca_2235 NC_012121.1 2291835 2292653 R (O78472) Hypothetical 35.9 kDa protein ycf39; Hypothetical protein; hypothetical protein complement(2291835..2292653) Staphylococcus carnosus subsp. carnosus TM300 7551155 YP_002635324.1 CDS Sca_2236 NC_012121.1 2292901 2293659 D (Q8K3Z0) Caspase recruitment domain protein 15 (Nod2 protein),InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein 2292901..2293659 Staphylococcus carnosus subsp. carnosus TM300 7551156 YP_002635325.1 CDS Sca_2237 NC_012121.1 2294722 2294820 R Similar to C-terminal part(aa 223-308) of putative glycine betaine/carnitine/choline-binding lipoprotein precursor [Staphylococcus aureus subsp. aureus MRSA252] (YP_041887): 313 aa,(O32243) Glycine betaine/carnitine/choline-binding protein precursor (Osmoprotectant-binding protein); Hypothetical protein; hypothetical protein complement(2294722..2294820) Staphylococcus carnosus subsp. carnosus TM300 7551157 YP_002635326.1 CDS Sca_2238 NC_012121.1 2294981 2295652 R Similar to N-terminal part (aa 1-219) of putative glycine betaine/carnitine/choline-binding lipoprotein precursor [Staphylococcus aureus subsp. aureus MRSA252] (YP_041887): 313 aa,(O32243) Glycine betaine/carnitine/choline-binding protein precursor (Osmoprotectant-binding protein),InterPro: Substrate-binding region of ABC-type glycine betaine transport system; Hypothetical protein; hypothetical protein complement(2294981..2295652) Staphylococcus carnosus subsp. carnosus TM300 7551158 YP_002635327.1 CDS Sca_2239 NC_012121.1 2295775 2296422 R similar to,(O52655) Bis(5-nucleosyl)-tetraphosphatase symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 55-P1P4-tetraphosphate pyrophosphohydrolase),InterPro: Metallo-phosphoesterase; Hypothetical protein; putative serine/threonine protein phosphatase complement(2295775..2296422) Staphylococcus carnosus subsp. carnosus TM300 7551159 YP_002635328.1 CDS Sca_2240 NC_012121.1 2296427 2298142 R (Q57341) Putative ferric transport system permease protein fbpB,InterPro: Binding-protein-dependent transport systems inner membrane component; Hypothetical protein; putative ABC transporter permease complement(2296427..2298142) Staphylococcus carnosus subsp. carnosus TM300 7551160 YP_002635329.1 CDS Sca_2241 NC_012121.1 2298321 2299355 R (P43951) Protein HI0131 precursor,InterPro: Bacterial extracellular solute-binding protein family 1; Hypothetical protein; putative ABC transporter substrate-binding protein complement(2298321..2299355) Staphylococcus carnosus subsp. carnosus TM300 7551161 YP_002635330.1 CDS Sca_2242 NC_012121.1 2299356 2300579 R (Q8XZP8) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase),InterPro: ABC transporter; Hypothetical protein; putative ABC transporter ATP-binding protein complement(2299356..2300579) Staphylococcus carnosus subsp. carnosus TM300 7551162 YP_002635331.1 CDS Sca_2243 NC_012121.1 2300730 2301599 D (P39647) Putative HTH-type transcriptional regulator ywfK,InterPro: LysR substrate binding domain; Hypothetical protein; LysR family transcriptional regulator 2300730..2301599 Staphylococcus carnosus subsp. carnosus TM300 7551163 YP_002635332.1 CDS Sca_2244 NC_012121.1 2301783 2302547 R (Q02821) Importin alpha subunit (Karyopherin alpha subunit) (Serine-rich RNA polymerase I suppressor protein); Hypothetical protein; hypothetical protein complement(2301783..2302547) Staphylococcus carnosus subsp. carnosus TM300 7551164 YP_002635333.1 CDS Sca_2245 NC_012121.1 2302754 2303149 D Hypothetical protein; hypothetical protein 2302754..2303149 Staphylococcus carnosus subsp. carnosus TM300 7551165 YP_002635334.1 CDS Sca_2246 NC_012121.1 2303158 2303328 D Hypothetical protein; hypothetical protein 2303158..2303328 Staphylococcus carnosus subsp. carnosus TM300 7551166 YP_002635335.1 CDS Sca_2247 NC_012121.1 2303501 2303656 R Hypothetical protein; hypothetical protein complement(2303501..2303656) Staphylococcus carnosus subsp. carnosus TM300 7551167 YP_002635336.1 CDS Sca_2248 NC_012121.1 2304722 2305585 D (Q8CMK8) Membrane protein oxaA 2 precursor,InterPro: 60 kDa inner membrane protein; Hypothetical protein; putative lipoprotein 2304722..2305585 Staphylococcus carnosus subsp. carnosus TM300 7551168 YP_002635337.1 CDS Sca_2249 NC_012121.1 2305639 2306400 R Hypothetical protein; hypothetical protein complement(2305639..2306400) Staphylococcus carnosus subsp. carnosus TM300 7551169 YP_002635338.1 CDS Sca_2250 NC_012121.1 2306451 2307512 R Hypothetical protein; hypothetical protein complement(2306451..2307512) Staphylococcus carnosus subsp. carnosus TM300 7551170 YP_002635339.1 CDS argF NC_012121.1 2307980 2308984 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2307980..2308984 Staphylococcus carnosus subsp. carnosus TM300 7551171 YP_002635340.1 CDS arcC NC_012121.1 2309000 2309932 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2309000..2309932 Staphylococcus carnosus subsp. carnosus TM300 7551411 YP_002635341.1 CDS Sca_2253 NC_012121.1 2310511 2312106 D (P44023) Hypothetical protein HI0594,InterPro: C4-dicarboxylate anaerobic carrier; Hypothetical protein; hypothetical protein 2310511..2312106 Staphylococcus carnosus subsp. carnosus TM300 7551406 YP_002635342.1 CDS Sca_2254 NC_012121.1 2313759 2314637 D similar to general stress protein,(P80238) General stress protein 26 (GSP26); Hypothetical protein; hypothetical protein 2313759..2314637 Staphylococcus carnosus subsp. carnosus TM300 7551172 YP_002635343.1 CDS Sca_2255 NC_012121.1 2314746 2316311 R (P44023) Hypothetical protein HI0594,InterPro: C4-dicarboxylate anaerobic carrier,similar to putative membrane arginine transporter; Hypothetical protein; hypothetical protein complement(2314746..2316311) Staphylococcus carnosus subsp. carnosus TM300 7551173 YP_002635344.1 CDS arcC NC_012121.1 2316416 2317348 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2316416..2317348) Staphylococcus carnosus subsp. carnosus TM300 7551174 YP_002635345.1 CDS argF NC_012121.1 2317385 2318386 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2317385..2318386) Staphylococcus carnosus subsp. carnosus TM300 7551407 YP_002635346.1 CDS nhaC NC_012121.1 2318707 2320200 D Hypothetical protein; Na+/H+ antiporter NhaC 2318707..2320200 Staphylococcus carnosus subsp. carnosus TM300 7551412 YP_002635347.1 CDS acsA NC_012121.1 2320571 2322160 D (P39062) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthase),InterPro: AMP-dependent synthetase and ligase; Hypothetical protein; acetate-CoA ligase 2320571..2322160 Staphylococcus carnosus subsp. carnosus TM300 7551852 YP_002635348.1 CDS putP NC_012121.1 2322338 2323885 R Similar to osmoregulated proline transporter opuE,Bacillus subtilis,,492AA, Expect = 1e-141, Identities = 272/478 (56%), Positives = 366/478 (76%), Gaps = 14/478 (2%),and to Sodium/proline symporter putP, Escherichia coli,502AA,,Expect = 1e-108, Identities = 224/481 (46%),Positives = 324/481 (67%), Gaps = 17/481 (3%), (O06493) Osmoregulated proline transporter (Sodium/proline symporter),InterPro: Na+/solute symporter; Hypothetical protein; high affinity proline permease complement(2322338..2323885) Staphylococcus carnosus subsp. carnosus TM300 7551366 YP_002635349.1 CDS Sca_2261 NC_012121.1 2324603 2325361 R (P57140) Hypothetical protein BU028/BU029; Hypothetical protein; hypothetical protein complement(2324603..2325361) Staphylococcus carnosus subsp. carnosus TM300 7551986 YP_002635350.1 CDS Sca_2262 NC_012121.1 2325641 2326465 R Hypothetical protein; hypothetical protein complement(2325641..2326465) Staphylococcus carnosus subsp. carnosus TM300 7551175 YP_002635351.1 CDS Sca_2263 NC_012121.1 2326830 2327783 R (P37112) N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) (L-aminoacylase),InterPro: Peptidase M20/M25/M40,Similar to C-terminal part (aa 77-383) of N-acyl-L-amino acid amidohydrolase [Deinococcus radiodurans R1] (AAF11266): 388 aa; Hypothetical protein; hypothetical protein complement(2326830..2327783) Staphylococcus carnosus subsp. carnosus TM300 7551176 YP_002635352.1 CDS Sca_2264 NC_012121.1 2327768 2327983 R (P54955) Hypothetical protein yxeP,Similar to N-terminal part (aa 10-69) of N-acyl-L-amino acid amidohydrolase [Deinococcus radiodurans R1] (AAF11266): 388 aa; Hypothetical protein; hypothetical protein complement(2327768..2327983) Staphylococcus carnosus subsp. carnosus TM300 7551177 YP_002635353.1 CDS Sca_2265 NC_012121.1 2328065 2329585 R (P46133) Aminobenzoyl-glutamate transport protein,InterPro: AbgT putative transporter family; Conserved hypothetical protein; putative aminobenzoyl-glutamate transport protein complement(2328065..2329585) Staphylococcus carnosus subsp. carnosus TM300 7551178 YP_002635354.1 CDS mqo2 NC_012121.1 2329898 2331385 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2329898..2331385) Staphylococcus carnosus subsp. carnosus TM300 7551179 YP_002635355.1 CDS Sca_2267 NC_012121.1 2331673 2332536 D (Q9CE03) Hypothetical UPF0177 protein yvdC,InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein 2331673..2332536 Staphylococcus carnosus subsp. carnosus TM300 7551806 YP_002635356.1 CDS Sca_2268 NC_012121.1 2332619 2333482 R (O05730) Probable short-chain type dehydrogenase/reductase vdlC (EC 1.-.-.-),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; hypothetical protein complement(2332619..2333482) Staphylococcus carnosus subsp. carnosus TM300 7551180 YP_002635357.1 CDS Sca_2269 NC_012121.1 2333529 2334542 R similar to transcriptional regulator,similar to (Q56069) Multiple antibiotic resistance protein marR,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; hypothetical protein complement(2333529..2334542) Staphylococcus carnosus subsp. carnosus TM300 7551181 YP_002635358.1 CDS Sca_2270 NC_012121.1 2335026 2335496 R similar to (Q56069) Multiple antibiotic resistance protein marR,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; hypothetical protein complement(2335026..2335496) Staphylococcus carnosus subsp. carnosus TM300 7551182 YP_002635359.1 CDS Sca_2271 NC_012121.1 2335585 2337018 R similar to parts of (P32399) Hypothetical protein yhgE (ORFB); Hypothetical protein; hypothetical protein complement(2335585..2337018) Staphylococcus carnosus subsp. carnosus TM300 7551183 YP_002635360.1 CDS Sca_2272 NC_012121.1 2337536 2338726 R (Q9Z9P2) Glycerate kinase (EC 2.7.1.31),InterPro: Conserved hypothetical protein 45; Conserved hypothetical protein; Glycerate kinase complement(2337536..2338726) Staphylococcus carnosus subsp. carnosus TM300 7551184 YP_002635361.1 CDS Sca_2273 NC_012121.1 2338866 2339291 D similar to general stress protein,(P80238) General stress protein 26 (GSP26); Hypothetical protein; hypothetical protein 2338866..2339291 Staphylococcus carnosus subsp. carnosus TM300 7551185 YP_002635362.1 CDS Sca_2274 NC_012121.1 2339372 2340235 R (P37271) Phytoene synthase chloroplast precursor (EC 2.5.1.-),InterPro: Squalene/phytoene synthase; Conserved hypothetical protein; squalene synthase-like protein complement(2339372..2340235) Staphylococcus carnosus subsp. carnosus TM300 7551186 YP_002635363.1 CDS Sca_2275 NC_012121.1 2340530 2341864 R similar to putative transporter,(P55908) Hypothetical protein ycgA,InterPro: C4-dicarboxylate anaerobic carrier; Hypothetical protein; hypothetical protein complement(2340530..2341864) Staphylococcus carnosus subsp. carnosus TM300 7551187 YP_002635364.1 CDS Sca_2276 NC_012121.1 2342086 2342337 R Hypothetical protein; hypothetical protein complement(2342086..2342337) Staphylococcus carnosus subsp. carnosus TM300 7551188 YP_002635365.1 CDS Sca_2277 NC_012121.1 2342684 2343790 D similar to putative permease; Hypothetical protein; hypothetical protein 2342684..2343790 Staphylococcus carnosus subsp. carnosus TM300 7551189 YP_002635366.1 CDS Sca_2278 NC_012121.1 2344275 2344472 R Hypothetical protein; hypothetical protein complement(2344275..2344472) Staphylococcus carnosus subsp. carnosus TM300 7551190 YP_002635367.1 CDS fabG NC_012121.1 2344825 2345526 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2344825..2345526 Staphylococcus carnosus subsp. carnosus TM300 7551191 YP_002635368.1 CDS Sca_2280 NC_012121.1 2345690 2346994 D (P54950) Putative monooxygenase yxeK; Hypothetical protein; putative nitrilotriacetate monooxygenase 2345690..2346994 Staphylococcus carnosus subsp. carnosus TM300 7551554 YP_002635369.1 CDS Sca_2281 NC_012121.1 2347508 2348152 R (O66932) Glycogen phosphorylase (EC 2.4.1.1); Hypothetical protein; hypothetical protein complement(2347508..2348152) Staphylococcus carnosus subsp. carnosus TM300 7551192 YP_002635370.1 CDS Sca_2282 NC_012121.1 2348305 2349042 R Hypothetical protein; hypothetical protein complement(2348305..2349042) Staphylococcus carnosus subsp. carnosus TM300 7551193 YP_002635371.1 CDS Sca_2283 NC_012121.1 2349208 2351862 R (Q02510) Lipase precursor (EC 3.1.1.3) (Glycerol ester hydrolase),InterPro: Surface protein from Gram-positive cocci anchor region,truncated putative clumping factor B; Hypothetical protein; hypothetical protein complement(2349208..2351862) Staphylococcus carnosus subsp. carnosus TM300 7551194 YP_002635372.1 CDS Sca_2284 NC_012121.1 2352156 2354183 R parts of the gene are similar to ,(Q92H60) Probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme),and:,InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; Hypothetical protein; hypothetical protein complement(2352156..2354183) Staphylococcus carnosus subsp. carnosus TM300 7551195 YP_002635373.1 CDS Sca_2285 NC_012121.1 2354247 2354435 D Hypothetical protein; hypothetical protein 2354247..2354435 Staphylococcus carnosus subsp. carnosus TM300 7551196 YP_002635374.1 CDS Sca_2286 NC_012121.1 2354532 2355008 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A complement(2354532..2355008) Staphylococcus carnosus subsp. carnosus TM300 7551197 YP_002635375.1 CDS Sca_2287 NC_012121.1 2355324 2356067 D (Q9X248) 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative short-chain dehydrogenase 2355324..2356067 Staphylococcus carnosus subsp. carnosus TM300 7551198 YP_002635376.1 CDS Sca_2288 NC_012121.1 2356126 2356599 R Hypothetical protein; hypothetical protein complement(2356126..2356599) Staphylococcus carnosus subsp. carnosus TM300 7551199 YP_002635377.1 CDS mocA NC_012121.1 2356806 2357888 R (P77735) Hypothetical oxidoreductase yajO (EC 1.-.-.-),InterPro: Aldo/keto reductase; Hypothetical protein; putative oxidoreductase protein complement(2356806..2357888) Staphylococcus carnosus subsp. carnosus TM300 7551200 YP_002635378.1 CDS Sca_2290 NC_012121.1 2358104 2359291 D truncated putative endonuclease/exonuclease/phosphatase; Hypothetical protein; hypothetical protein 2358104..2359291 Staphylococcus carnosus subsp. carnosus TM300 7551799 YP_002635379.1 CDS Sca_2291 NC_012121.1 2359288 2359974 D truncated putative extracellular nuclease; Hypothetical protein; hypothetical protein 2359288..2359974 Staphylococcus carnosus subsp. carnosus TM300 7551201 YP_002635380.1 CDS Sca_2292 NC_012121.1 2360192 2360326 D Hypothetical protein; hypothetical protein 2360192..2360326 Staphylococcus carnosus subsp. carnosus TM300 7551202 YP_002635381.1 CDS Sca_2293 NC_012121.1 2360516 2361700 D similar to putative transport proteins / permeases; Hypothetical protein; hypothetical protein 2360516..2361700 Staphylococcus carnosus subsp. carnosus TM300 7551203 YP_002635382.1 CDS Sca_2294 NC_012121.1 2361755 2361976 D Hypothetical protein; hypothetical protein 2361755..2361976 Staphylococcus carnosus subsp. carnosus TM300 7551204 YP_002635383.1 CDS Sca_2295 NC_012121.1 2362055 2362657 R Hypothetical protein; hypothetical protein complement(2362055..2362657) Staphylococcus carnosus subsp. carnosus TM300 7551205 YP_002635384.1 CDS Sca_2296 NC_012121.1 2362783 2362971 R Hypothetical protein; hypothetical protein complement(2362783..2362971) Staphylococcus carnosus subsp. carnosus TM300 7551206 YP_002635385.1 CDS Sca_2297 NC_012121.1 2363020 2363211 R Hypothetical protein; hypothetical protein complement(2363020..2363211) Staphylococcus carnosus subsp. carnosus TM300 7551207 YP_002635386.1 CDS Sca_2298 NC_012121.1 2363592 2364509 D (Q9WXE6) Chlorohydroquinone/hydroquinone 12-dioxygenase (EC 1.13.11.-) (Hydroquinone meta-cleavage dioxygenase),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Conserved hypothetical protein; putative dioxygenase 2363592..2364509 Staphylococcus carnosus subsp. carnosus TM300 7551208 YP_002635387.1 CDS Sca_2299 NC_012121.1 2364586 2364861 R Hypothetical protein; hypothetical protein complement(2364586..2364861) Staphylococcus carnosus subsp. carnosus TM300 7551209 YP_002635388.1 CDS Sca_2300 NC_012121.1 2364937 2365665 R InterPro: Excinuclease ABC C subunit N-terminal; Hypothetical protein; hypothetical protein complement(2364937..2365665) Staphylococcus carnosus subsp. carnosus TM300 7551210 YP_002635389.1 CDS Sca_2301 NC_012121.1 2365990 2366520 D Hypothetical protein; hypothetical protein 2365990..2366520 Staphylococcus carnosus subsp. carnosus TM300 7551211 YP_002635390.1 CDS Sca_2302 NC_012121.1 2366644 2367579 D similar to Tellurite resistance protein; Hypothetical protein; hypothetical protein 2366644..2367579 Staphylococcus carnosus subsp. carnosus TM300 7551212 YP_002635391.1 CDS Sca_2303 NC_012121.1 2367785 2368738 D Hypothetical protein; hypothetical protein 2367785..2368738 Staphylococcus carnosus subsp. carnosus TM300 7551213 YP_002635392.1 CDS Sca_2304 NC_012121.1 2368926 2369561 R Hypothetical protein; hypothetical protein complement(2368926..2369561) Staphylococcus carnosus subsp. carnosus TM300 7551214 YP_002635393.1 CDS Sca_2305 NC_012121.1 2369683 2370336 R Hypothetical protein; hypothetical protein complement(2369683..2370336) Staphylococcus carnosus subsp. carnosus TM300 7551215 YP_002635394.1 CDS Sca_2306 NC_012121.1 2370329 2371030 R Hypothetical protein; hypothetical protein complement(2370329..2371030) Staphylococcus carnosus subsp. carnosus TM300 7551216 YP_002635395.1 CDS Sca_2307 NC_012121.1 2371030 2372562 R (Q89A21) ATP-dependent DNA helicase rep (EC 3.6.1.-); Hypothetical protein; Superfamily I DNA and RNA helicases complement(2371030..2372562) Staphylococcus carnosus subsp. carnosus TM300 7551217 YP_002635396.1 CDS Sca_2308 NC_012121.1 2372708 2373412 D Hypothetical protein; hypothetical protein 2372708..2373412 Staphylococcus carnosus subsp. carnosus TM300 7551218 YP_002635397.1 CDS Sca_2309 NC_012121.1 2373545 2374999 R (P15078) Carbon starvation protein A,InterPro: Carbon starvation protein CstA; Conserved hypothetical protein; carbon starvation protein A-like protein complement(2373545..2374999) Staphylococcus carnosus subsp. carnosus TM300 7551219 YP_002635398.1 CDS opuD NC_012121.1 2376022 2377608 R (P54417) Glycine betaine transporter, opuD like protein,InterPro: BCCT transporter; Conserved hypothetical protein; opuD-like protein, glycine betaine transporter complement(2376022..2377608) Staphylococcus carnosus subsp. carnosus TM300 7551220 YP_002635399.1 CDS Sca_2311 NC_012121.1 2377868 2379505 R Hypothetical protein; hypothetical protein complement(2377868..2379505) Staphylococcus carnosus subsp. carnosus TM300 7551895 YP_002635400.1 CDS Sca_2312 NC_012121.1 2379576 2381012 R truncated (Q53585) Enterotoxin type H precursor (SEH); Hypothetical protein; hypothetical protein complement(2379576..2381012) Staphylococcus carnosus subsp. carnosus TM300 7551221 YP_002635401.1 CDS Sca_2313 NC_012121.1 2381446 2382402 R (Q9F1W4) Heat-inducible transcription repressor hrcA; Hypothetical protein; hypothetical protein complement(2381446..2382402) Staphylococcus carnosus subsp. carnosus TM300 7551222 YP_002635402.1 CDS Sca_2314 NC_012121.1 2382625 2382990 D (P47082) Hypothetical 65.3 kDa protein in PRE3-MPP10 intergenic region; Hypothetical protein; hypothetical protein 2382625..2382990 Staphylococcus carnosus subsp. carnosus TM300 7551223 YP_002635403.1 CDS Sca_2315 NC_012121.1 2383048 2384013 R (P40983) Hypothetical protein in xynA 3region (ORF6) (Fragment); Hypothetical protein; hypothetical protein complement(2383048..2384013) Staphylococcus carnosus subsp. carnosus TM300 7551224 YP_002635404.1 CDS Sca_2316 NC_012121.1 2384386 2385315 D (Q58111) Hypothetical UPF0003 protein MJ0700,InterPro: Mechanosensitive (MS) ion channel; Hypothetical protein; hypothetical protein 2384386..2385315 Staphylococcus carnosus subsp. carnosus TM300 7551225 YP_002635405.1 CDS srlD NC_012121.1 2385782 2386576 D Converts D-sorbitol-dphosphate to D-fructose-6-phosphate; sorbitol-6-phosphate 2-dehydrogenase 2385782..2386576 Staphylococcus carnosus subsp. carnosus TM300 7551226 YP_002635406.1 CDS srlM NC_012121.1 2386603 2388489 D (P46321) Probable licABCH operon regulator,InterPro: Transcriptional antiterminator bglG; Hypothetical protein; putative regulator of sorbitol operon 2386603..2388489 Staphylococcus carnosus subsp. carnosus TM300 7552141 YP_002635407.1 CDS Sca_2319 NC_012121.1 2388492 2388965 D (P15081) Glucitol operon activator protein; Hypothetical protein; hypothetical protein 2388492..2388965 Staphylococcus carnosus subsp. carnosus TM300 7552142 YP_002635408.1 CDS Sca_2320 NC_012121.1 2388949 2389500 D (P56579) PTS system glucitol/sorbitol-specific IIC2 component (EIIC2-Gut) (Glucitol/sorbitol-permease IIC2 component) (Phosphotransferase enzyme II C2 component),InterPro: PTS system enzyme II sorbitol-specific factor; Hypothetical protein; putative sorbitol PTS, EIIC 2388949..2389500 Staphylococcus carnosus subsp. carnosus TM300 7551227 YP_002635409.1 CDS Sca_2321 NC_012121.1 2389512 2390531 D (O32333) PTS system glucitol/sorbitol-specific IIBC component (EIIBC-Gut) (Glucitol/sorbitol-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Gut),InterPro: Sorbitol phosphotransferase enzyme II; Hypothetical protein; putative sorbitol PTS, EIIBC 2389512..2390531 Staphylococcus carnosus subsp. carnosus TM300 7551228 YP_002635410.1 CDS Sca_2322 NC_012121.1 2390576 2390926 D (P59784) PTS system glucitol/sorbitol-specific IIA component (EIIA-Gut) (Glucitol/sorbitol-permease IIA component) (Phosphotransferase enzyme II A component) (EC 2.7.1.69) (EIII-Gut),InterPro: PTS system glucitol/sorbitol-specific IIA component; Hypothetical protein; putative sorbitol PTS, EIIA 2390576..2390926 Staphylococcus carnosus subsp. carnosus TM300 7551229 YP_002635411.1 CDS Sca_2323 NC_012121.1 2391085 2392335 R (P53552) RLR1 protein (THO2 protein); Hypothetical protein; hypothetical protein complement(2391085..2392335) Staphylococcus carnosus subsp. carnosus TM300 7551230 YP_002635412.1 CDS Sca_2324 NC_012121.1 2392339 2393379 R (P15005) 5-methylcytosine-specific restriction enzyme B (EC 3.1.21.-) (EcoKMcrBC); Hypothetical protein; putative restriction enzyme complement(2392339..2393379) Staphylococcus carnosus subsp. carnosus TM300 7551231 YP_002635413.1 CDS Sca_2325 NC_012121.1 2393615 2394793 R (P13520) Overcoming lysogenization defect protein; Hypothetical protein; hypothetical protein complement(2393615..2394793) Staphylococcus carnosus subsp. carnosus TM300 7551232 YP_002635414.1 CDS Sca_2326 NC_012121.1 2394844 2395581 R (O74475) 13-beta-glucan synthase component bgs4 (EC 2.4.1.34) (13-beta-D-glucan-UDP glucosyltransferase); Hypothetical protein; hypothetical protein complement(2394844..2395581) Staphylococcus carnosus subsp. carnosus TM300 7551233 YP_002635415.1 CDS Sca_2327 NC_012121.1 2395874 2396827 D (P46017) FraH protein; Hypothetical protein; hypothetical protein 2395874..2396827 Staphylococcus carnosus subsp. carnosus TM300 7551234 YP_002635416.1 CDS Sca_2328 NC_012121.1 2396827 2398131 D (Q9UUL4) Cell wall alpha-13-glucan synthase mok12 (EC 2.4.1.183); Hypothetical protein; hypothetical protein 2396827..2398131 Staphylococcus carnosus subsp. carnosus TM300 7551235 YP_002635417.1 CDS Sca_2329 NC_012121.1 2398209 2398604 R Hypothetical protein; hypothetical protein complement(2398209..2398604) Staphylococcus carnosus subsp. carnosus TM300 7551236 YP_002635418.1 CDS Sca_2330 NC_012121.1 2398955 2399317 D (Q58721) Putative HTH-type transcriptional regulator MJ1325,InterPro: Bacterial regulatory protein ArsR family; Hypothetical protein; putative ArsR family transcriptional regulator 2398955..2399317 Staphylococcus carnosus subsp. carnosus TM300 7551237 YP_002635419.1 CDS Sca_2331 NC_012121.1 2399319 2400551 D (P32382) NADH oxidase (EC 1.-.-.-),InterPro: NADH:flavin oxidoreductase/NADH oxidase; Hypothetical protein; putative NADH oxidase-related oxidoreductase protein 2399319..2400551 Staphylococcus carnosus subsp. carnosus TM300 7551238 YP_002635420.1 CDS Sca_2332 NC_012121.1 2400597 2401535 D (Q99390) Hypothetical 31.7 kDa protein in traX-finO intergenic region (ORFC),InterPro: Esterase/lipase/thioesterase; Hypothetical protein; hypothetical protein 2400597..2401535 Staphylococcus carnosus subsp. carnosus TM300 7551239 YP_002635421.1 CDS Sca_2333 NC_012121.1 2401651 2402781 R (Q9CLT9) Acetylornithine deacetylase (EC 3.5.1.16) (Acetylornithinase) (AO) (N-acetylornithinase) (NAO),InterPro: Peptidase M20/M25/M40; Hypothetical protein; putative succinyl-diaminopimelate desuccinylase complement(2401651..2402781) Staphylococcus carnosus subsp. carnosus TM300 7551240 YP_002635422.1 CDS Sca_2334 NC_012121.1 2402895 2403020 R no Shine-Dalgarno sequence,(Q9TM05) ATP-dependent Clp protease ATP-binding subunit clpA; Hypothetical protein; hypothetical protein complement(2402895..2403020) Staphylococcus carnosus subsp. carnosus TM300 7551241 YP_002635423.1 CDS gutB NC_012121.1 2403415 2404467 D (P79896) Alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (EC 1.2.1.1) (FDH) (FALDH),InterPro: Zinc-containing alcohol dehydrogenase superfamily; Conserved hypothetical protein; alcohol dehydrogenase, zinc-containing 2403415..2404467 Staphylococcus carnosus subsp. carnosus TM300 7551242 YP_002635424.1 CDS katA NC_012121.1 2404691 2406187 D (Q9ZN99) Catalase (EC 1.11.1.6),InterPro: Catalase; Conserved hypothetical protein; catalase 2404691..2406187 Staphylococcus carnosus subsp. carnosus TM300 7551674 YP_002635425.1 CDS Sca_2337 NC_012121.1 2406256 2406576 D (Q88KJ1) Trigger factor (TF); Hypothetical protein; hypothetical protein 2406256..2406576 Staphylococcus carnosus subsp. carnosus TM300 7551725 YP_002635426.1 CDS Sca_2338 NC_012121.1 2406630 2407550 R (P37513) Hypothetical protein yyaK,InterPro: Abortive infection protein; Hypothetical protein; hypothetical protein complement(2406630..2407550) Staphylococcus carnosus subsp. carnosus TM300 7551243 YP_002635427.1 CDS Sca_2339 NC_012121.1 2407912 2408670 D no Shine-Dalgarno sequence,(P46490) Hypothetical protein HI0198,InterPro: Protein of unknown function DUF81; Hypothetical protein; hypothetical protein 2407912..2408670 Staphylococcus carnosus subsp. carnosus TM300 7551244 YP_002635428.1 CDS Sca_2340 NC_012121.1 2408759 2409661 D (Q58111) Hypothetical UPF0003 protein MJ0700,InterPro: Mechanosensitive (MS) ion channel; Hypothetical protein; hypothetical protein 2408759..2409661 Staphylococcus carnosus subsp. carnosus TM300 7551245 YP_002635429.1 CDS Sca_2341 NC_012121.1 2410112 2410975 R truncated (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase); Hypothetical protein; hypothetical protein complement(2410112..2410975) Staphylococcus carnosus subsp. carnosus TM300 7551246 YP_002635430.1 CDS Sca_2342 NC_012121.1 2411012 2412355 R (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase),InterPro: Glycoside hydrolase family 3 N-terminal; Hypothetical protein; putative glucosidase complement(2411012..2412355) Staphylococcus carnosus subsp. carnosus TM300 7551247 YP_002635431.1 CDS Sca_2343 NC_012121.1 2412420 2413010 D Hypothetical protein; hypothetical protein 2412420..2413010 Staphylococcus carnosus subsp. carnosus TM300 7551248 YP_002635432.1 CDS capM NC_012121.1 2413102 2413659 R (Q57491) Hypothetical sugar transferase HI0872 (EC 2.-.-.-),InterPro: Bacterial sugar transferase; Conserved hypothetical protein; capsular polysaccharide synthesis enzyme Cap5M complement(2413102..2413659) Staphylococcus carnosus subsp. carnosus TM300 7551249 YP_002635433.1 CDS Sca_2345 NC_012121.1 2413660 2414550 R Hypothetical protein; hypothetical protein complement(2413660..2414550) Staphylococcus carnosus subsp. carnosus TM300 7551461 YP_002635434.1 CDS Sca_2346 NC_012121.1 2414547 2415707 R similar to Capsular polysaccharide biosynthesis glycosyl transferase capM ,(P39862) Capsular polysaccharide biosynthesis glycosyl transferase capM (EC 2.-.-.-),InterPro: Glycosyl transferase group 1; Hypothetical protein; putative capsular polysaccharide biosynthesis protein complement(2414547..2415707) Staphylococcus carnosus subsp. carnosus TM300 7551250 YP_002635435.1 CDS Sca_2347 NC_012121.1 2415712 2416668 R (O51317) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) (Glu-ADT subunit A); Hypothetical protein; hypothetical protein complement(2415712..2416668) Staphylococcus carnosus subsp. carnosus TM300 7551251 YP_002635436.1 CDS capL NC_012121.1 2416670 2417944 R (P39861) CapL protein,InterPro: UDP-glucose/GDP-mannose dehydrogenase; Conserved hypothetical protein; capsular polysaccharide biosynthesis protein CapL complement(2416670..2417944) Staphylococcus carnosus subsp. carnosus TM300 7551252 YP_002635437.1 CDS capI NC_012121.1 2417992 2419005 R (P39858) CapI protein,InterPro: NAD-dependent epimerase/dehydratase; Hypothetical protein; capsular polysaccharide biosynthesis protein Cap I complement(2417992..2419005) Staphylococcus carnosus subsp. carnosus TM300 7551460 YP_002635438.1 CDS Sca_2350 NC_012121.1 2419008 2420060 R (Q9R9N0) Lipopolysaccharide core biosynthesis glycosyl transferase lpsD (EC 2.-.-.-),InterPro: Glycosyl transferase group 1; Hypothetical protein; hypothetical protein complement(2419008..2420060) Staphylococcus carnosus subsp. carnosus TM300 7551459 YP_002635439.1 CDS Sca_2351 NC_012121.1 2420076 2421443 R (P37781) Putative O-antigen transporter,InterPro: Polysaccharide biosynthesis protein; Hypothetical protein; hypothetical protein complement(2420076..2421443) Staphylococcus carnosus subsp. carnosus TM300 7551253 YP_002635440.1 CDS Sca_2352 NC_012121.1 2421436 2422737 R Hypothetical protein; hypothetical protein complement(2421436..2422737) Staphylococcus carnosus subsp. carnosus TM300 7551254 YP_002635441.1 CDS capD'' NC_012121.1 2422762 2424138 R (P39853) Capsular polysaccharide biosynthesis protein capD,InterPro: Polysaccharide biosynthesis protein CapD,Similar to C-terminal part (aa 127-599) of capsular polysaccharide biosynthesis protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300153): 611 aa; Conserved hypothetical protein; capsular polysaccharide synthesis enzyme CapD (fragment 2) complement(2422762..2424138) Staphylococcus carnosus subsp. carnosus TM300 7551255 YP_002635442.1 CDS capD' NC_012121.1 2424190 2424567 R (P39853) Capsular polysaccharide biosynthesis protein capD,Similar to N-terminus (aa 1-125) of capsular polysaccharide biosynthesis protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (YP_300153): 611 aa; Hypothetical protein; capsular polysaccharide synthesis enzyme CapD (fragment 1) complement(2424190..2424567) Staphylococcus carnosus subsp. carnosus TM300 7551458 YP_002635443.1 CDS capC NC_012121.1 2424591 2425355 R (P96717) Putative protein-tyrosine phosphatase ywqE (EC 3.1.3.48),InterPro: PHP domain C-terminal region; Conserved hypothetical protein; capsular polysaccharide biosynthesis protein complement(2424591..2425355) Staphylococcus carnosus subsp. carnosus TM300 7551457 YP_002635444.1 CDS capB NC_012121.1 2425355 2426053 R (P39851) Putative tyrosine-protein kinase capB (EC 2.7.1.112),InterPro: Exopolysaccharide synthesis protein; Conserved hypothetical protein; capsular polysaccharide biosynthesis protein complement(2425355..2426053) Staphylococcus carnosus subsp. carnosus TM300 7551455 YP_002635445.1 CDS capA NC_012121.1 2426072 2426743 R (P71050) Hypothetical protein yveK,InterPro: Lipopolysaccharide biosynthesis; Conserved hypothetical protein; putative capsular polysaccharide synthesis enzyme Cap5A complement(2426072..2426743) Staphylococcus carnosus subsp. carnosus TM300 7551452 YP_002635446.1 CDS Sca_2358 NC_012121.1 2427045 2427680 R (Q58677) Hypothetical protein MJ1281; Hypothetical protein; hypothetical protein complement(2427045..2427680) Staphylococcus carnosus subsp. carnosus TM300 7551451 YP_002635447.1 CDS Sca_2359 NC_012121.1 2427918 2428469 R (P46330) Putative HTH-type transcriptional regulator yxbF,InterPro: Bacterial regulatory protein TetR HTH motif; Conserved hypothetical protein; TetR family transcriptional regulator complement(2427918..2428469) Staphylococcus carnosus subsp. carnosus TM300 7551256 YP_002635448.1 CDS Sca_2360 NC_012121.1 2428637 2429551 R (P42243) Hypothetical transport protein ycbK,InterPro: Protein of unknown function DUF6; Hypothetical protein; putative transport protein complement(2428637..2429551) Staphylococcus carnosus subsp. carnosus TM300 7551257 YP_002635449.1 CDS citH NC_012121.1 2429671 2430978 R (P42308) Citrate transporter,InterPro: Citrate transporter; Conserved hypothetical protein; citrat transporter complement(2429671..2430978) Staphylococcus carnosus subsp. carnosus TM300 7551258 YP_002635450.1 CDS Sca_2362 NC_012121.1 2431158 2432237 R similar to succinyl-diaminopimelate desuccinylase (Q931I4),Probable succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (SDAP),InterPro: Peptidase M20/M25/M40; Hypothetical protein; hypothetical protein complement(2431158..2432237) Staphylococcus carnosus subsp. carnosus TM300 7551470 YP_002635451.1 CDS gabD NC_012121.1 2432442 2433881 D (P24549) Aldehyde dehydrogenase 1A1 (EC 1.2.1.3) (Aldehyde dehydrogenase cytosolic) (ALDH class 1) (ALHDII) (ALDH-E1),InterPro: Aldehyde dehydrogenase; Conserved hypothetical protein; succinate-semialdehyde dehydrogenase (NADP+) 2432442..2433881 Staphylococcus carnosus subsp. carnosus TM300 7551259 YP_002635452.1 CDS Sca_2364 NC_012121.1 2433902 2435323 D (P36205) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia ligase) (GS),InterPro: Glutamine synthetase catalytic domain; Conserved hypothetical protein; putative glutamine synthetase 2433902..2435323 Staphylococcus carnosus subsp. carnosus TM300 7551603 YP_002635453.1 CDS Sca_2365 NC_012121.1 2435373 2436140 D (Q9X248) 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase),InterPro: Short-chain dehydrogenase/reductase SDR; Hypothetical protein; putative oxidoreductase 2435373..2436140 Staphylococcus carnosus subsp. carnosus TM300 7551260 YP_002635454.1 CDS Sca_2366 NC_012121.1 2436320 2437603 R similar to ethanolamine utilization protein EutH -Escherichia coli,(P41796) Ethanolamine utilization protein eutH (Putative ethanolamine transporter),InterPro: Ethanolamine utilisation protein EutH; Hypothetical protein; hypothetical protein complement(2436320..2437603) Staphylococcus carnosus subsp. carnosus TM300 7551261 YP_002635455.1 CDS Sca_2367 NC_012121.1 2437769 2438359 R (O29221) Chemotaxis response regulator protein-glutamate methylesterase (EC 3.1.1.61),InterPro: Response regulator antiterminator; Hypothetical protein; putative two-component system response regulator complement(2437769..2438359) Staphylococcus carnosus subsp. carnosus TM300 7551262 YP_002635456.1 CDS Sca_2368 NC_012121.1 2438340 2439665 R similar to two-component sensor histidine kinase,(P27896) Nitrate/nitrite sensor protein narQ (EC 2.7.3.-),InterPro: ATP-binding region ATPase-like; Hypothetical protein; hypothetical protein complement(2438340..2439665) Staphylococcus carnosus subsp. carnosus TM300 7551263 YP_002635457.1 CDS adc NC_012121.1 2439964 2440701 R (Q9EYI7) Probable acetoacetate decarboxylase (EC 4.1.1.4) (ADC) (AAD); Conserved hypothetical protein; putative acetoacetate decarboxylase complement(2439964..2440701) Staphylococcus carnosus subsp. carnosus TM300 7551264 YP_002635458.1 CDS Sca_2370 NC_012121.1 2440716 2441744 R similar to 2-dehydropantoate 2-reductase ,(Q9A0B3) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169) (Ketopantoate reductase) (KPA reductase) (KPR),InterPro: Ketopantoate reductase ApbA/PanE; Hypothetical protein; hypothetical protein complement(2440716..2441744) Staphylococcus carnosus subsp. carnosus TM300 7551370 YP_002635459.1 CDS Sca_2371 NC_012121.1 2441844 2442728 D similar to transcriptional regulator, LysR family,(O78432) Putative HTH-type transcriptional regulator ycf30,InterPro: Bacterial regulatory protein LysR HTH motif; Hypothetical protein; hypothetical protein 2441844..2442728 Staphylococcus carnosus subsp. carnosus TM300 7551265 YP_002635460.1 CDS adhC NC_012121.1 2442766 2443893 R (P25405) Alcohol dehydrogenase I-A (EC 1.1.1.1) (ADH IA),InterPro: Zinc-containing alcohol dehydrogenase superfamily; Conserved hypothetical protein; putative alcohol dehydrogenase complement(2442766..2443893) Staphylococcus carnosus subsp. carnosus TM300 7551266 YP_002635461.1 CDS Sca_2373 NC_012121.1 2443907 2444755 R (Q9QXK7) Cleavage and polyadenylation specificity factor 73 kDa subunit (CPSF 73 kDa subunit),InterPro: Beta-lactamase-like; Hypothetical protein; hypothetical protein complement(2443907..2444755) Staphylococcus carnosus subsp. carnosus TM300 7551373 YP_002635462.1 CDS gabD NC_012121.1 2444966 2446348 D (P24549) Aldehyde dehydrogenase 1A1 (EC 1.2.1.3) (Aldehyde dehydrogenase cytosolic) (ALDH class 1) (ALHDII) (ALDH-E1),InterPro: Aldehyde dehydrogenase; Conserved hypothetical protein; succinate-semialdehyde dehydrogenase 2444966..2446348 Staphylococcus carnosus subsp. carnosus TM300 7551267 YP_002635463.1 CDS Sca_2375 NC_012121.1 2446495 2447109 D (P70976) Hypothetical protein ybaJ; Hypothetical protein; hypothetical protein 2446495..2447109 Staphylococcus carnosus subsp. carnosus TM300 7551604 YP_002635464.1 CDS Sca_2376 NC_012121.1 2447422 2447964 R Hypothetical protein; hypothetical protein complement(2447422..2447964) Staphylococcus carnosus subsp. carnosus TM300 7551268 YP_002635465.1 CDS lytM NC_012121.1 2448392 2449381 R (P10548) Lysostaphin precursor (EC 3.4.24.75) (Glycyl-glycine endopeptidase),InterPro: Peptidase M23/M37,Note: this sequence is about 80 aa longer than similar sequences from other staphylococci.; Hypothetical protein; putative LytM-like peptidoglycan hydrolase complement(2448392..2449381) Staphylococcus carnosus subsp. carnosus TM300 7551269 YP_002635466.1 CDS Sca_2378 NC_012121.1 2449890 2450699 R (P36650) Icc protein,InterPro: Metallo-phosphoesterase; Hypothetical protein; hypothetical protein complement(2449890..2450699) Staphylococcus carnosus subsp. carnosus TM300 7551764 YP_002635467.1 CDS Sca_2379 NC_012121.1 2451018 2451251 D Hypothetical protein; hypothetical protein 2451018..2451251 Staphylococcus carnosus subsp. carnosus TM300 7551270 YP_002635468.1 CDS Sca_2380 NC_012121.1 2451371 2451991 R (P96707) Putative NAD(P)H nitroreductase ydgI (EC 1.-.-.-),InterPro: Nitroreductase family; Conserved hypothetical protein; putative NAD(P)H nitroreductase complement(2451371..2451991) Staphylococcus carnosus subsp. carnosus TM300 7551271 YP_002635469.1 CDS Sca_2381 NC_012121.1 2452063 2452413 D (P44558) Putative HTH-type transcriptional regulator HI0186,InterPro: Bacterial regulatory protein MerR family; Hypothetical protein; putative transcriptional regulator 2452063..2452413 Staphylococcus carnosus subsp. carnosus TM300 7551272 YP_002635470.1 CDS Sca_2382 NC_012121.1 2452574 2453434 R Hypothetical protein; hypothetical protein complement(2452574..2453434) Staphylococcus carnosus subsp. carnosus TM300 7551273 YP_002635471.1 CDS Sca_2383 NC_012121.1 2453692 2454429 R (P20187) Hypothetical 37.1 kDa protein in transposon TN4556,InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; hypothetical protein complement(2453692..2454429) Staphylococcus carnosus subsp. carnosus TM300 7551274 YP_002635472.1 CDS Sca_2384 NC_012121.1 2454500 2455864 R (Q10875) Hypothetical transport protein Rv1979c/MT2031,InterPro: Amino acid permease-associated region; Hypothetical protein; hypothetical protein complement(2454500..2455864) Staphylococcus carnosus subsp. carnosus TM300 7551275 YP_002635473.1 CDS Sca_2385 NC_012121.1 2455869 2456594 R (Q9ZDC7) Hypothetical protein RP404,InterPro: Glutamine amidotransferase class-I; Hypothetical protein; hypothetical protein complement(2455869..2456594) Staphylococcus carnosus subsp. carnosus TM300 7551276 YP_002635474.1 CDS Sca_2386 NC_012121.1 <2456726 2457073 R Similar to C-terminal part (aa 347-454) of amino acid permease [Lactobacillus reuteri JCM 1112] (ZP_01164202): 464 aa; Hypothetical protein; hypothetical protein complement(<2456726..2457073) Staphylococcus carnosus subsp. carnosus TM300 7551277 YP_002635475.1 CDS Sca_2387 NC_012121.1 <2457089 2458102 R Similar to N-terminal part (aa 5-354) of amino acid permease [Lactobacillus reuteri JCM 1112] (ZP_01164202): 464 aa; Hypothetical protein; hypothetical protein complement(<2457089..2458102) Staphylococcus carnosus subsp. carnosus TM300 7551278 YP_002635476.1 CDS Sca_2388 NC_012121.1 2458249 2459784 R (O70247) Sodium-dependent multivitamin transporter (Na(+)-dependent multivitamin transporter),InterPro: Na+/solute symporter; Conserved hypothetical protein; solute:Na+ symporter protein, SSS family complement(2458249..2459784) Staphylococcus carnosus subsp. carnosus TM300 7551279 YP_002635477.1 CDS nanA NC_012121.1 2459814 2460695 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(2459814..2460695) Staphylococcus carnosus subsp. carnosus TM300 7551280 YP_002635478.1 CDS Sca_2390 NC_012121.1 2460941 2461807 D similar to glucokinase,(P26832) Hypothetical protein CPE0188,InterPro: ROK family; Conserved hypothetical protein; hypothetical protein 2460941..2461807 Staphylococcus carnosus subsp. carnosus TM300 7551845 YP_002635479.1 CDS Sca_2391 NC_012121.1 2461902 2462714 R (P44540) Putative HTH-type transcriptional regulator HI0143,InterPro: Sugar isomerase (SIS); Conserved hypothetical protein; hypothetical protein complement(2461902..2462714) Staphylococcus carnosus subsp. carnosus TM300 7551281 YP_002635480.1 CDS Sca_2392 NC_012121.1 2462880 2463554 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 2462880..2463554 Staphylococcus carnosus subsp. carnosus TM300 7551282 YP_002635481.1 CDS nagB NC_012121.1 2463577 2464305 D (Q99W40) Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase),InterPro: Glucosamine-6-phosphate isomerase; Conserved hypothetical protein; glucosamine-6-phosphate isomerase 2463577..2464305 Staphylococcus carnosus subsp. carnosus TM300 7551283 YP_002635482.1 CDS Sca_2394 NC_012121.1 2464431 2464847 D Hypothetical protein; hypothetical protein 2464431..2464847 Staphylococcus carnosus subsp. carnosus TM300 7551844 YP_002635483.1 CDS Sca_2395 NC_012121.1 2464888 2465838 R similar to divalent cation transport ,(P40948) Hypothetical protein yqxL,InterPro: Mg2+ transporter protein CorA-like; Hypothetical protein; putative CorA-like Mg2+ transporter protein complement(2464888..2465838) Staphylococcus carnosus subsp. carnosus TM300 7551284 YP_002635484.1 CDS lip NC_012121.1 2466085 2468448 R (P10335) Lipase precursor (EC 3.1.1.3) (Glycerol ester hydrolase),InterPro: Esterase/lipase/thioesterase; High confidence in function and specificity; triacylglycerol lipase complement(2466085..2468448) Staphylococcus carnosus subsp. carnosus TM300 7551285 YP_002635485.1 CDS Sca_2397 NC_012121.1 2468769 2469452 R (Q04902) Hypothetical 26.0 kDa protein in FET4-ERR1 intergenic region,InterPro: Protein of unknown function ThiJ/PfpI; Hypothetical protein; ThiJ/PfpI family protein complement(2468769..2469452) Staphylococcus carnosus subsp. carnosus TM300 7551751 YP_002635486.1 CDS Sca_2398 NC_012121.1 2469801 2470775 D Hypothetical protein; hypothetical protein 2469801..2470775 Staphylococcus carnosus subsp. carnosus TM300 7551286 YP_002635487.1 CDS Sca_2399 NC_012121.1 2470759 2470998 D (P60077) Hypothetical UPF0291 protein SA2360; Hypothetical protein; hypothetical protein 2470759..2470998 Staphylococcus carnosus subsp. carnosus TM300 7551287 YP_002635488.1 CDS pgm5 NC_012121.1 2471083 2471670 R (Q98DM0) 23-bisphosphoglycerate-dependent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM),InterPro: Phosphoglycerate/bisphosphoglycerate mutase; Hypothetical protein; phosphoglycerate mutase family protein complement(2471083..2471670) Staphylococcus carnosus subsp. carnosus TM300 7551288 YP_002635489.1 CDS Sca_2401 NC_012121.1 2471912 2472532 D (O05406) Hypothetical protein yrhP,InterPro: Lysine exporter protein (LYSE/YGGA); Hypothetical protein; hypothetical protein 2471912..2472532 Staphylococcus carnosus subsp. carnosus TM300 7551934 YP_002635490.1 CDS Sca_2402 NC_012121.1 2472577 2474832 R (O26543) UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A),InterPro: AAA ATPase; Hypothetical protein; putative exinuclease ABC subunit A complement(2472577..2474832) Staphylococcus carnosus subsp. carnosus TM300 7551289 YP_002635491.1 CDS Sca_2403 NC_012121.1 2474946 2477261 R (P46918) Minor teichoic acid biosynthesis protein ggaB,InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Conserved hypothetical protein; hypothetical protein complement(2474946..2477261) Staphylococcus carnosus subsp. carnosus TM300 7551290 YP_002635492.1 CDS Sca_2404 NC_012121.1 2477395 2479950 R (P46918) Minor teichoic acid biosynthesis protein ggaB,InterPro: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Conserved hypothetical protein; hypothetical protein complement(2477395..2479950) Staphylococcus carnosus subsp. carnosus TM300 7551291 YP_002635493.1 CDS Sca_2405 NC_012121.1 2479967 2480110 R Hypothetical protein; hypothetical protein complement(2479967..2480110) Staphylococcus carnosus subsp. carnosus TM300 7551292 YP_002635494.1 CDS fadX NC_012121.1 2480494 2482050 D Conserved hypothetical protein; putative acetyl-CoA transferase 2480494..2482050 Staphylococcus carnosus subsp. carnosus TM300 7551293 YP_002635495.1 CDS fadE NC_012121.1 2482080 2483597 D (P94547) Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase),InterPro: AMP-dependent synthetase and ligase; Conserved hypothetical protein; putative acid-CoA ligase 2482080..2483597 Staphylococcus carnosus subsp. carnosus TM300 7551560 YP_002635496.1 CDS Sca_2408 NC_012121.1 2483677 2484885 D (Q20772) Probable glutaryl-CoA dehydrogenase mitochondrial precursor (EC 1.3.99.7) (GCD),InterPro: Acyl-CoA dehydrogenase C-terminal; Conserved hypothetical protein; putative glutaryl-CoA dehydrogenase 2483677..2484885 Staphylococcus carnosus subsp. carnosus TM300 7551559 YP_002635497.1 CDS Sca_2409 NC_012121.1 2484930 2487191 D (P40939) Trifunctional enzyme alpha subunit mitochondrial precursor (TP-alpha) (78 kDa gastrin-binding protein) [Includes: Long-chain enoyl-CoA hydratase (EC 4.2.1.17); Long chain 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)],InterPro: 3-hydroxyacyl-CoA dehydrogenase NAD binding domain; Conserved hypothetical protein; putative fatty oxidation complex protein 2484930..2487191 Staphylococcus carnosus subsp. carnosus TM300 7551294 YP_002635498.1 CDS fadA NC_012121.1 2487222 2488406 D (P09110) 3-ketoacyl-CoA thiolase peroxisomal precursor (EC 2.3.1.16) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) (Peroxisomal 3-oxoacyl-CoA thiolase),InterPro: Thiolase; Conserved hypothetical protein; putative acetyl-CoA acetyltransferase 2487222..2488406 Staphylococcus carnosus subsp. carnosus TM300 7551295 YP_002635499.1 CDS Sca_2411 NC_012121.1 2488535 2489074 D (P52080) Hypothetical UPF0039 protein SAV1054/SA0906/MW0937 (ORF3),InterPro: GCN5-related N-acetyltransferase; Hypothetical protein; hypothetical protein 2488535..2489074 Staphylococcus carnosus subsp. carnosus TM300 7551558 YP_002635500.1 CDS Sca_2412 NC_012121.1 2489064 2490008 R similar to GlpX type II fructose-1,6-bisphosphatase; fructose 1,6-bisphosphatase II complement(2489064..2490008) Staphylococcus carnosus subsp. carnosus TM300 7551296 YP_002635501.1 CDS Sca_2413 NC_012121.1 2490013 2490456 R similar to ribose 5-phosphate isomerase B ,(Q8CRJ3) Galactose-6-phosphate isomerase lacB subunit (EC 5.3.1.26),InterPro: Ribose/galactose isomerase; Hypothetical protein; ribose 5-phosphate isomerase B-like protein complement(2490013..2490456) Staphylococcus carnosus subsp. carnosus TM300 7551297 YP_002635502.1 CDS Sca_2414 NC_012121.1 2490469 2491098 R similar to dihydroxyacetone kinase ,similar to glycerone kinase EC 2.7.1.29,(P76014) Protein ycgS,InterPro: Dak phosphatase domain; Hypothetical protein; hypothetical protein complement(2490469..2491098) Staphylococcus carnosus subsp. carnosus TM300 7551298 YP_002635503.1 CDS Sca_2415 NC_012121.1 2491085 2492104 R (P76015) Hypothetical protein ycgT,InterPro: Dak kinase domain; Hypothetical protein; dihydroxyacetone kinase family protein complement(2491085..2492104) Staphylococcus carnosus subsp. carnosus TM300 7551299 YP_002635504.1 CDS Sca_2416 NC_012121.1 2492120 2493304 R (O05390) Alpha-ketoglutarate permease,InterPro: General substrate transporter; High confidence in function and specificity; putative alpha-ketoglutarate permease complement(2492120..2493304) Staphylococcus carnosus subsp. carnosus TM300 7551300 YP_002635505.1 CDS gutB NC_012121.1 2493454 2494536 R Hypothetical protein; putative zinc-binding dehydrogenase complement(2493454..2494536) Staphylococcus carnosus subsp. carnosus TM300 7551301 YP_002635506.1 CDS glpR2 NC_012121.1 2494712 2495482 D (P77721) Putative HTH-type transcriptional regulator ydjF,InterPro: Bacterial regulatory protein DeoR family; Hypothetical protein; putative regulatory protein 2494712..2495482 Staphylococcus carnosus subsp. carnosus TM300 7551675 YP_002635507.1 CDS rbsK NC_012121.1 2495603 2496517 R (P44331) Ribokinase (EC 2.7.1.15),InterPro: Carbohydrate kinase PfkB; High confidence in function and specificity; ribokinase complement(2495603..2496517) Staphylococcus carnosus subsp. carnosus TM300 7551645 YP_002635508.1 CDS rbsD NC_012121.1 2496536 2496940 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(2496536..2496940) Staphylococcus carnosus subsp. carnosus TM300 7552010 YP_002635509.1 CDS Sca_2421 NC_012121.1 2496966 2497847 R (P60946) Putative ribose uptake protein rbsU; Conserved hypothetical protein; putative sugar transport protein complement(2496966..2497847) Staphylococcus carnosus subsp. carnosus TM300 7552009 YP_002635510.1 CDS Sca_2422 NC_012121.1 2498051 2498365 R local similarity to (Q9CPA2) Ribose operon repressor; Hypothetical protein; hypothetical protein complement(2498051..2498365) Staphylococcus carnosus subsp. carnosus TM300 7551302 YP_002635511.1 CDS Sca_2423 NC_012121.1 2498432 2499043 R (P37947) HTH-type transcriptional regulator degA (Degradation activator),InterPro: Bacterial regulatory protein LacI HTH motif; Conserved hypothetical protein; hypothetical protein complement(2498432..2499043) Staphylococcus carnosus subsp. carnosus TM300 7551303 YP_002635512.1 CDS Sca_2424 NC_012121.1 2499224 2499748 D (O04885) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase),InterPro: Glyoxalase/Bleomycin resistance protein/dioxygenase domain; Hypothetical protein; hypothetical protein 2499224..2499748 Staphylococcus carnosus subsp. carnosus TM300 7551304 YP_002635513.1 CDS Sca_2425 NC_012121.1 2499992 2500834 D (P39315) Hypothetical protein ytfG; Hypothetical protein; hypothetical protein 2499992..2500834 Staphylococcus carnosus subsp. carnosus TM300 7551305 YP_002635514.1 CDS Sca_2426 NC_012121.1 2500999 2501499 R similar to immunodominant antigen B, Staphylococcus aureus, 170AA, Expect = 6e-12, Identities = 48/170 (28%),Positives = 78/170 (45%), Gaps = 11/170 (6%),(Q92E82) ATP phosphoribosyltransferase regulatory subunit; Hypothetical protein; hypothetical protein complement(2500999..2501499) Staphylococcus carnosus subsp. carnosus TM300 7551306 YP_002635515.1 CDS Sca_2427 NC_012121.1 2501722 2502099 R no Shine Dalgarno sequence,Only local similarity to:,(P46324) Hypothetical protein yvrN,InterPro: Protein of unknown function DUF214; Hypothetical protein; hypothetical protein complement(2501722..2502099) Staphylococcus carnosus subsp. carnosus TM300 7551307 YP_002635516.1 CDS Sca_2428 NC_012121.1 2502595 2503044 R only local similarity to:,(P37503) Putative HTH-type transcriptional regulator yybA,InterPro: Bacterial regulatory protein MarR family; Hypothetical protein; hypothetical protein complement(2502595..2503044) Staphylococcus carnosus subsp. carnosus TM300 7551308 YP_002635517.1 CDS Sca_2429 NC_012121.1 2503086 2505914 R (P49022) Phage infection protein; Hypothetical protein; hypothetical protein complement(2503086..2505914) Staphylococcus carnosus subsp. carnosus TM300 7551309 YP_002635518.1 CDS Sca_2430 NC_012121.1 2506129 2508255 D similar to autolysin precursor (Staphylococcus epidermidis),(P39046) Muramidase-2 precursor (EC 3.2.1.17) (14-beta-N-acetylmuramoylhydrolase) (Peptidoglycan hydrolase) (Pg-hydrolase-2) (Lysosyme),InterPro: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Conserved hypothetical protein; N-acetylmuramoyl-L-alanine amidase 2506129..2508255 Staphylococcus carnosus subsp. carnosus TM300 7551310 YP_002635519.1 CDS Sca_2431 NC_012121.1 2508330 2510183 R (P02469) Laminin beta-1 chain precursor (Laminin B1 chain),InterPro: Surface protein from Gram-positive cocci anchor region; Hypothetical protein; hypothetical protein complement(2508330..2510183) Staphylococcus carnosus subsp. carnosus TM300 7551311 YP_002635520.1 CDS Sca_2432 NC_012121.1 2510426 2510848 D (Q9RA96) Transcriptional regulator slyA (Regulator of antibiotic and pigment protein),InterPro: Bacterial regulatory protein MarR family; Conserved hypothetical protein; MarR family regulatory protein 2510426..2510848 Staphylococcus carnosus subsp. carnosus TM300 7551312 YP_002635521.1 CDS Sca_2433 NC_012121.1 2510961 2512316 D (Q58119) Hypothetical protein MJ0709,InterPro: Multi antimicrobial extrusion protein MatE; Hypothetical protein; hypothetical protein 2510961..2512316 Staphylococcus carnosus subsp. carnosus TM300 7551313 YP_002635522.1 CDS Sca_2434 NC_012121.1 2512530 2513264 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2512530..2513264 Staphylococcus carnosus subsp. carnosus TM300 7551314 YP_002635523.1 CDS Sca_2435 NC_012121.1 2513328 2514008 R (Q09675) Hypothetical protein C5H10.02c in chromosome I,InterPro: Protein of unknown function ThiJ/PfpI; Hypothetical protein; hypothetical protein complement(2513328..2514008) Staphylococcus carnosus subsp. carnosus TM300 7551315 YP_002635524.1 CDS Sca_2436 NC_012121.1 2514033 2514866 R no Shine Dalgarno sequence,(P55584) Hypothetical 38.7 kDa protein y4NL; Hypothetical protein; hypothetical protein complement(2514033..2514866) Staphylococcus carnosus subsp. carnosus TM300 7551316 YP_002635525.1 CDS Sca_2437 NC_012121.1 2515042 2515347 R no Shine Dalgarno sequence,(Q58721) Putative HTH-type transcriptional regulator MJ1325,InterPro: Bacterial regulatory protein ArsR family; Hypothetical protein; hypothetical protein complement(2515042..2515347) Staphylococcus carnosus subsp. carnosus TM300 7551317 YP_002635526.1 CDS Sca_2438 NC_012121.1 2515609 2516460 D (P77775) Hypothetical UPF0105 protein yfcH; Hypothetical protein; hypothetical protein 2515609..2516460 Staphylococcus carnosus subsp. carnosus TM300 7551318 YP_002635527.1 CDS pmi NC_012121.1 2516519 2517454 R (P39841) Mannose-6-phosphate isomerase (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) (Phosphohexomutase),InterPro: Mannose-6-phosphate isomerase type I; Family membership; mannose-6-phosphate isomerase complement(2516519..2517454) Staphylococcus carnosus subsp. carnosus TM300 7551319 YP_002635528.1 CDS fruA NC_012121.1 2517469 2519421 R (P23355) PTS system fructose-specific IIBC component (EIIBC-Fru) (Fructose-permease IIBC component) (Phosphotransferase enzyme II BC component) (EC 2.7.1.69) (EII-Fru),InterPro: PTS fructose IIC component; Conserved hypothetical protein; putative fructose phosphotransferase system enzyme fruA complement(2517469..2519421) Staphylococcus carnosus subsp. carnosus TM300 7551944 YP_002635529.1 CDS Sca_2441 NC_012121.1 2519500 2521371 R (P46321) Probable licABCH operon regulator,InterPro: Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Conserved hypothetical protein; putative transcriptional regulator complement(2519500..2521371) Staphylococcus carnosus subsp. carnosus TM300 7551593 YP_002635530.1 CDS Sca_2442 NC_012121.1 2521397 2523403 R Conserved hypothetical protein; hypothetical protein complement(2521397..2523403) Staphylococcus carnosus subsp. carnosus TM300 7551320 YP_002635531.1 CDS Sca_2443 NC_012121.1 2523758 2525158 R similar to,(P54585) Hypothetical transport protein yhcA,InterPro: Major facilitator superfamily; Conserved hypothetical protein; hypothetical protein complement(2523758..2525158) Staphylococcus carnosus subsp. carnosus TM300 7551321 YP_002635532.1 CDS Sca_2444 NC_012121.1 2525388 2527109 R Hypothetical protein; hypothetical protein complement(2525388..2527109) Staphylococcus carnosus subsp. carnosus TM300 7551322 YP_002635533.1 CDS pbp4 NC_012121.1 2527413 2528642 D (Q05523) D-alanyl-D-alanine carboxypeptidase precursor (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (CPase) (PBP5),InterPro: Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Hypothetical protein; penicillin binding protein 4 2527413..2528642 Staphylococcus carnosus subsp. carnosus TM300 7551323 YP_002635534.1 CDS Sca_2446 NC_012121.1 2528691 2530109 D similar to,(P71362) L-24-diaminobutyrate decarboxylase (EC 4.1.1.-) (DABA decarboxylase) (DABA-DC),InterPro: Pyridoxal-dependent decarboxylase; Hypothetical protein; hypothetical protein 2528691..2530109 Staphylococcus carnosus subsp. carnosus TM300 7551907 YP_002635535.1 CDS Sca_2447 NC_012121.1 2530303 2530869 D similar to,(P45743) Isochorismatase (EC 3.3.2.1) (23 dihydro-23 dihydroxybenzoate synthase) (Superoxide-inducible protein 1) (SOI1),InterPro: Isochorismatase hydrolase family; Hypothetical protein; hypothetical protein 2530303..2530869 Staphylococcus carnosus subsp. carnosus TM300 7551324 YP_002635536.1 CDS Sca_2448 NC_012121.1 2530880 2532244 D similar to (P54585) Hypothetical transport protein yhcA,InterPro: Major facilitator superfamily; Hypothetical protein; hypothetical protein 2530880..2532244 Staphylococcus carnosus subsp. carnosus TM300 7551325 YP_002635537.1 CDS Sca_2449 NC_012121.1 2532433 2533953 R similar to (O35018) Lincomycin resistance protein lmrB,InterPro: Major facilitator superfamily; Conserved hypothetical protein; hypothetical protein complement(2532433..2533953) Staphylococcus carnosus subsp. carnosus TM300 7551326 YP_002635538.1 CDS Sca_2450 NC_012121.1 2534419 2535147 R Hypothetical protein; hypothetical protein complement(2534419..2535147) Staphylococcus carnosus subsp. carnosus TM300 7551327 YP_002635539.1 CDS Sca_2451 NC_012121.1 2535721 2536200 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2535721..2536200) Staphylococcus carnosus subsp. carnosus TM300 7551328 YP_002635540.1 CDS Sca_2452 NC_012121.1 2536638 2537429 R (P56185) Hypothetical UPF0036 protein HP1430,InterPro: Beta-lactamase-like; Conserved hypothetical protein; hypothetical protein complement(2536638..2537429) Staphylococcus carnosus subsp. carnosus TM300 7551329 YP_002635541.1 CDS Sca_2453 NC_012121.1 2537756 2538544 R similar to Yycl protein B. subtilis; Hypothetical protein; hypothetical protein complement(2537756..2538544) Staphylococcus carnosus subsp. carnosus TM300 7551330 YP_002635542.1 CDS Sca_2454 NC_012121.1 2538541 2539875 R Hypothetical protein; hypothetical protein complement(2538541..2539875) Staphylococcus carnosus subsp. carnosus TM300 7551331 YP_002635543.1 CDS Sca_2455 NC_012121.1 2539865 2541709 R (Q45614) Sensor protein yycG (EC 2.7.3.-),InterPro: Histidine kinase; Family membership; two-component sensor histidine kinase complement(2539865..2541709) Staphylococcus carnosus subsp. carnosus TM300 7551332 YP_002635544.1 CDS vicR NC_012121.1 2541721 2542422 R (P37478) Transcriptional regulatory protein yycF,InterPro: Response regulator receiver; Hypothetical protein; putative response regulator complement(2541721..2542422) Staphylococcus carnosus subsp. carnosus TM300 7551333 YP_002635545.1 CDS Sca_2457 NC_012121.1 2542551 2542652 D no Shine Dalgarno sequence; Hypothetical protein; hypothetical protein 2542551..2542652 Staphylococcus carnosus subsp. carnosus TM300 7552295 YP_002635546.1 CDS Sca_2458 NC_012121.1 2543077 2543970 D (P54478) Hypothetical protein yqfU,InterPro: Protein of unknown function DUF161; Hypothetical protein; hypothetical protein 2543077..2543970 Staphylococcus carnosus subsp. carnosus TM300 7552218 YP_002635547.1 CDS purA NC_012121.1 2544074 2545360 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2544074..2545360) Staphylococcus carnosus subsp. carnosus TM300 7551335 YP_002635548.1 CDS dnaC NC_012121.1 2545739 2547136 R (P37469) Replicative DNA helicase (EC 3.6.1.-),InterPro: DnaB helicase; High confidence in function and specificity; Replicative DNA helicase complement(2545739..2547136) Staphylococcus carnosus subsp. carnosus TM300 7551971 YP_002635549.1 CDS rplI NC_012121.1 2547171 2547617 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2547171..2547617) Staphylococcus carnosus subsp. carnosus TM300 7551530 YP_002635550.1 CDS Sca_2462 NC_012121.1 2547614 2549581 R (P37484) Hypothetical protein yybT,InterPro: GGDEF; Hypothetical protein; hypothetical protein complement(2547614..2549581) Staphylococcus carnosus subsp. carnosus TM300 7552046 YP_002635551.1 CDS Sca_2463 NC_012121.1 2549596 2550507 R Hypothetical protein; hypothetical protein complement(2549596..2550507) Staphylococcus carnosus subsp. carnosus TM300 7551336 YP_002635552.1 CDS Sca_2464 NC_012121.1 2550745 2550852 D Hypothetical protein; hypothetical protein 2550745..2550852 Staphylococcus carnosus subsp. carnosus TM300 7551337 YP_002635553.1 CDS serS NC_012121.1 2551561 2552847 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2551561..2552847) Staphylococcus carnosus subsp. carnosus TM300 7551338 YP_002635554.1 CDS hutH NC_012121.1 2553228 2554742 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(2553228..2554742) Staphylococcus carnosus subsp. carnosus TM300 7552126 YP_002635555.1 CDS Sca_2467 NC_012121.1 2555005 2555499 D (P53405) Insulin gene enhancer protein ISL-1 (Islet-1),InterPro: Surface protein from Gram-positive cocci anchor region; Hypothetical protein; hypothetical protein 2555005..2555499 Staphylococcus carnosus subsp. carnosus TM300 7551709 YP_002635556.1 CDS Sca_2468 NC_012121.1 2555823 2556686 D (P96051) Hypothetical UPF0031 protein in folD-pbp2B intergenic region (ORF1091),InterPro: Protein of unknown function UPF0031; Conserved hypothetical protein; hypothetical protein 2555823..2556686 Staphylococcus carnosus subsp. carnosus TM300 7551339 YP_002635557.1 CDS gyrA NC_012121.1 2556751 2559429 R High confidence in function and specificity; DNA gyrase subunit A complement(2556751..2559429) Staphylococcus carnosus subsp. carnosus TM300 7551340 YP_002635558.1 CDS gyrB NC_012121.1 2559476 2561398 R High confidence in function and specificity; DNA gyrase subunit B complement(2559476..2561398) Staphylococcus carnosus subsp. carnosus TM300 7551676 YP_002635559.1 CDS recF NC_012121.1 2561420 2562532 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(2561420..2562532) Staphylococcus carnosus subsp. carnosus TM300 7551677 YP_002635560.1 CDS Sca_2472 NC_012121.1 2562529 2562753 R (P05650) Hypothetical protein yaaA,InterPro: RNA-binding S4; Hypothetical protein; hypothetical protein complement(2562529..2562753) Staphylococcus carnosus subsp. carnosus TM300 7552012 YP_002635561.1 CDS dnaN NC_012121.1 2563117 2564253 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(2563117..2564253) Staphylococcus carnosus subsp. carnosus TM300 7551341 YP_002635562.1 CDS dnaA NC_012121.1 2564508 2565869 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(2564508..2565869) Staphylococcus carnosus subsp. carnosus TM300 7551537 tRNA-Sca_0001 tRNA tRNA-Ser(TGA) NC_012121.1 108696 108788 D tRNA-Ser 108696..108788 Staphylococcus carnosus subsp. carnosus TM300 7551649 tRNA-Sca_0002 tRNA tRNA-Val_(TAC) NC_012121.1 173568 173643 D tRNA-Val 173568..173643 Staphylococcus carnosus subsp. carnosus TM300 7551355 tRNA-Sca_0003 tRNA tRNA-Thr_(TGT) NC_012121.1 173651 173726 D tRNA-Thr 173651..173726 Staphylococcus carnosus subsp. carnosus TM300 7552257 tRNA-Sca_0004 tRNA tRNA-Lys_(TTT) NC_012121.1 173740 173815 D tRNA-Lys 173740..173815 Staphylococcus carnosus subsp. carnosus TM300 7552251 tRNA-Sca_0005 tRNA tRNA-Gly_(GCC) NC_012121.1 173833 173907 D tRNA-Gly 173833..173907 Staphylococcus carnosus subsp. carnosus TM300 7552234 tRNA-Sca_0006 tRNA tRNA-Leu_(TAA) NC_012121.1 173916 174004 D tRNA-Leu 173916..174004 Staphylococcus carnosus subsp. carnosus TM300 7552219 tRNA-Sca_0007 tRNA tRNA-Arg_(ACG) NC_012121.1 174016 174092 D tRNA-Arg 174016..174092 Staphylococcus carnosus subsp. carnosus TM300 7552231 tRNA-Sca_0008 tRNA tRNA-Pro_(TGG) NC_012121.1 174125 174198 D tRNA-Pro 174125..174198 Staphylococcus carnosus subsp. carnosus TM300 7552203 tRNA-Sca_0009 tRNA tRNA-Ala_(TGC) NC_012121.1 174221 174296 D tRNA-Ala 174221..174296 Staphylococcus carnosus subsp. carnosus TM300 7552243 tRNA-Sca_0010 tRNA tRNA-Arg_(CCG) NC_012121.1 433261 433332 R tRNA-Arg complement(433261..433332) Staphylococcus carnosus subsp. carnosus TM300 7550039 tRNA-Sca_0011 tRNA tRNA-Ser_(GCT) NC_012121.1 645735 645823 R tRNA-Ser complement(645735..645823) Staphylococcus carnosus subsp. carnosus TM300 7550193 tRNA-Sca_0012 tRNA tRNA-Asn_(GTT) NC_012121.1 645825 645899 R tRNA-Asn complement(645825..645899) Staphylococcus carnosus subsp. carnosus TM300 7552246 tRNA-Sca_0013 tRNA tRNA-Arg_(TCT) NC_012121.1 783255 783328 R tRNA-Arg complement(783255..783328) Staphylococcus carnosus subsp. carnosus TM300 7550275 tRNA-Sca_0014 tRNA tRNA-Ser_(GGA) NC_012121.1 1415082 1415170 R tRNA-Ser complement(1415082..1415170) Staphylococcus carnosus subsp. carnosus TM300 7550594 tRNA-Sca_0015 tRNA tRNA-Glu_(TTC) NC_012121.1 1415232 1415303 R tRNA-Glu complement(1415232..1415303) Staphylococcus carnosus subsp. carnosus TM300 7552247 tRNA-Sca_0016 tRNA tRNA-Asn_(GTT) NC_012121.1 1415305 1415379 R tRNA-Asn complement(1415305..1415379) Staphylococcus carnosus subsp. carnosus TM300 7552216 tRNA-Sca_0017 tRNA tRNA-Gly_(TCC) NC_012121.1 1415391 1415464 R tRNA-Gly complement(1415391..1415464) Staphylococcus carnosus subsp. carnosus TM300 7552208 tRNA-Sca_0018 tRNA tRNA-His_(GTG) NC_012121.1 1415476 1415551 R tRNA-His complement(1415476..1415551) Staphylococcus carnosus subsp. carnosus TM300 7552221 tRNA-Sca_0019 tRNA tRNA-Phe_(GAA) NC_012121.1 1415571 1415643 R tRNA-Phe complement(1415571..1415643) Staphylococcus carnosus subsp. carnosus TM300 7552225 tRNA-Sca_0020 tRNA tRNA-Asp_(GTC) NC_012121.1 1415656 1415731 R tRNA-Asp complement(1415656..1415731) Staphylococcus carnosus subsp. carnosus TM300 7552241 tRNA-Sca_0021 tRNA tRNA-Met_(CAT) NC_012121.1 1415748 1415821 R tRNA-Met complement(1415748..1415821) Staphylococcus carnosus subsp. carnosus TM300 7552210 tRNA-Sca_0022 tRNA tRNA-Leu_(CAA) NC_012121.1 1452730 1452814 R tRNA-Leu complement(1452730..1452814) Staphylococcus carnosus subsp. carnosus TM300 7550616 tRNA-Sca_0023 tRNA tRNA-Gly_(TCC) NC_012121.1 1452821 1452895 R tRNA-Gly complement(1452821..1452895) Staphylococcus carnosus subsp. carnosus TM300 7552229 tRNA-Sca_0024 tRNA tRNA-Gly_(TCC) NC_012121.1 1452987 1453061 R tRNA-Gly complement(1452987..1453061) Staphylococcus carnosus subsp. carnosus TM300 7552222 tRNA-Sca_0025 tRNA tRNA-Cys_(GCA) NC_012121.1 1453070 1453144 R tRNA-Cys complement(1453070..1453144) Staphylococcus carnosus subsp. carnosus TM300 7552223 tRNA-Sca_0026 tRNA tRNA-Gln_(TTG) NC_012121.1 1453152 1453223 R tRNA-Gln complement(1453152..1453223) Staphylococcus carnosus subsp. carnosus TM300 7552213 tRNA-Sca_0027 tRNA tRNA-His_(GTG) NC_012121.1 1453236 1453308 R tRNA-His complement(1453236..1453308) Staphylococcus carnosus subsp. carnosus TM300 7552214 tRNA-Sca_0028 tRNA tRNA-Trp_(CCA) NC_012121.1 1453311 1453384 R tRNA-Trp complement(1453311..1453384) Staphylococcus carnosus subsp. carnosus TM300 7552226 tRNA-Sca_0029 tRNA tRNA-Tyr_(GTA) NC_012121.1 1453402 1453485 R tRNA-Tyr complement(1453402..1453485) Staphylococcus carnosus subsp. carnosus TM300 7552254 tRNA-Sca_0030 tRNA tRNA-Thr_(TGT) NC_012121.1 1453491 1453566 R tRNA-Thr complement(1453491..1453566) Staphylococcus carnosus subsp. carnosus TM300 7552255 tRNA-Sca_0031 tRNA tRNA-Phe_(GAA) NC_012121.1 1453573 1453648 R tRNA-Phe complement(1453573..1453648) Staphylococcus carnosus subsp. carnosus TM300 7552252 tRNA-Sca_0032 tRNA tRNA-Asp_(GTC) NC_012121.1 1453667 1453742 R tRNA-Asp complement(1453667..1453742) Staphylococcus carnosus subsp. carnosus TM300 7552242 tRNA-Sca_0033 tRNA tRNA-Met_(CAT) NC_012121.1 1453756 1453829 R tRNA-Met complement(1453756..1453829) Staphylococcus carnosus subsp. carnosus TM300 7552211 tRNA-Sca_0034 tRNA tRNA-Ser_(TGA) NC_012121.1 1453845 1453937 R tRNA-Ser complement(1453845..1453937) Staphylococcus carnosus subsp. carnosus TM300 7552238 tRNA-Sca_0035 tRNA tRNA-Met_(CAT) NC_012121.1 1453949 1454022 R tRNA-Met complement(1453949..1454022) Staphylococcus carnosus subsp. carnosus TM300 7552249 tRNA-Sca_0036 tRNA tRNA-Met_(CAT) NC_012121.1 1454051 1454124 R tRNA-Met complement(1454051..1454124) Staphylococcus carnosus subsp. carnosus TM300 7552239 tRNA-Sca_0037 tRNA tRNA-Ala_(TGC) NC_012121.1 1454155 1454230 R tRNA-Ala complement(1454155..1454230) Staphylococcus carnosus subsp. carnosus TM300 7552240 tRNA-Sca_0038 tRNA tRNA-Pro_(TGG) NC_012121.1 1454248 1454321 R tRNA-Pro complement(1454248..1454321) Staphylococcus carnosus subsp. carnosus TM300 7552201 tRNA-Sca_0039 tRNA tRNA-Arg_(ACG) NC_012121.1 1454333 1454406 R tRNA-Arg complement(1454333..1454406) Staphylococcus carnosus subsp. carnosus TM300 7552244 tRNA-Sca_0040 tRNA tRNA-Leu_(TAA) NC_012121.1 1454417 1454505 R tRNA-Leu complement(1454417..1454505) Staphylococcus carnosus subsp. carnosus TM300 7552204 tRNA-Sca_0041 tRNA tRNA-Gly_(GCC) NC_012121.1 1454514 1454588 R tRNA-Gly complement(1454514..1454588) Staphylococcus carnosus subsp. carnosus TM300 7552232 tRNA-Sca_0042 tRNA tRNA-Leu_(TAG) NC_012121.1 1454592 1454673 R tRNA-Leu complement(1454592..1454673) Staphylococcus carnosus subsp. carnosus TM300 7552220 tRNA-Sca_0043 tRNA tRNA-Lys_(TTT) NC_012121.1 1454682 1454757 R tRNA-Lys complement(1454682..1454757) Staphylococcus carnosus subsp. carnosus TM300 7552233 tRNA-Sca_0044 tRNA tRNA-Thr_(TGT) NC_012121.1 1454763 1454838 R tRNA-Thr complement(1454763..1454838) Staphylococcus carnosus subsp. carnosus TM300 7552235 tRNA-Sca_0045 tRNA tRNA-Val_(TAC) NC_012121.1 1454848 1454923 R tRNA-Val complement(1454848..1454923) Staphylococcus carnosus subsp. carnosus TM300 7552253 tRNA-Sca_0046 tRNA tRNA-Ala_(TGC) NC_012121.1 1458211 1458286 R tRNA-Ala complement(1458211..1458286) Staphylococcus carnosus subsp. carnosus TM300 7551350 tRNA-Sca_0047 tRNA tRNA-Ile_(GAT) NC_012121.1 1458307 1458383 R tRNA-Ile complement(1458307..1458383) Staphylococcus carnosus subsp. carnosus TM300 7552202 tRNA-Sca_0048 tRNA tRNA-Gly_(TCC) NC_012121.1 1590643 1590716 R tRNA-Gly complement(1590643..1590716) Staphylococcus carnosus subsp. carnosus TM300 7551346 tRNA-Sca_0049 tRNA tRNA-Leu_(GAG) NC_012121.1 1590741 1590826 R tRNA-Leu complement(1590741..1590826) Staphylococcus carnosus subsp. carnosus TM300 7552224 tRNA-Sca_0050 tRNA tRNA-Lys_(TTT) NC_012121.1 1684089 1684161 R tRNA-Lys complement(1684089..1684161) Staphylococcus carnosus subsp. carnosus TM300 7550756 tRNA-Sca_0051 tRNA tRNA-Gln_(TTG) NC_012121.1 1684165 1684239 R tRNA-Gln complement(1684165..1684239) Staphylococcus carnosus subsp. carnosus TM300 7552236 tRNA-Sca_0052 tRNA tRNA-Tyr_(GTA) NC_012121.1 1684247 1684330 R tRNA-Tyr complement(1684247..1684330) Staphylococcus carnosus subsp. carnosus TM300 7552215 tRNA-Sca_0053 tRNA tRNA-Val_(TAC) NC_012121.1 1684354 1684429 R tRNA-Val complement(1684354..1684429) Staphylococcus carnosus subsp. carnosus TM300 7552256 tRNA-Sca_0054 tRNA tRNA-Glu_(TTC) NC_012121.1 1684440 1684511 R tRNA-Glu complement(1684440..1684511) Staphylococcus carnosus subsp. carnosus TM300 7552259 tRNA-Sca_0055 tRNA tRNA-Asn_(GTT) NC_012121.1 1684515 1684589 R tRNA-Asn complement(1684515..1684589) Staphylococcus carnosus subsp. carnosus TM300 7552217 tRNA-Sca_0056 tRNA tRNA-Ile_(GAT) NC_012121.1 1687869 1687945 R tRNA-Ile complement(1687869..1687945) Staphylococcus carnosus subsp. carnosus TM300 7551352 tRNA-Sca_0057 tRNA tRNA-Ser_(TGA) NC_012121.1 2221900 2221992 D tRNA-Ser 2221900..2221992 Staphylococcus carnosus subsp. carnosus TM300 7551118 tRNA-Sca_0058 tRNA tRNA-Ser_(CGA) NC_012121.1 2238540 2238632 R tRNA-Ser complement(2238540..2238632) Staphylococcus carnosus subsp. carnosus TM300 7550534 tRNA-Sca_0059 tRNA tRNA-Asp_(GTC) NC_012121.1 2542818 2542890 R tRNA-Asp complement(2542818..2542890) Staphylococcus carnosus subsp. carnosus TM300 7551334 tRNA-Sca_0060 tRNA tRNA-Glu_(TTC) NC_012121.1 2542896 2542970 R tRNA-Glu complement(2542896..2542970) Staphylococcus carnosus subsp. carnosus TM300 7552212 Sca_16S_rRNA_A rRNA 16SrRNA_A NC_012121.1 121792 123346 D 16S ribosomal RNA 121792..123346 Staphylococcus carnosus subsp. carnosus TM300 7552017 Sca_23S_rRNA_A rRNA 23SrRNA_A NC_012121.1 123589 126512 D 23S ribosomal RNA 123589..126512 Staphylococcus carnosus subsp. carnosus TM300 7551343 Sca_5S_rRNA_A rRNA 5S_rRNA_A NC_012121.1 126583 126697 D 5S ribosomal RNA 126583..126697 Staphylococcus carnosus subsp. carnosus TM300 7551348 Sca_5S_rRNA_B2 rRNA 5S_rRNA_B2 NC_012121.1 173443 173557 D 5S ribosomal RNA 173443..173557 Staphylococcus carnosus subsp. carnosus TM300 7551763 Sca_16S_rRNA_B rRNA 16S_rRNA_B NC_012121.1 174420 175973 D 16S ribosomal RNA 174420..175973 Staphylococcus carnosus subsp. carnosus TM300 7552200 Sca_23S_rRNA_B rRNA 23S_rRNA_B NC_012121.1 176216 179140 D 23S ribosomal RNA 176216..179140 Staphylococcus carnosus subsp. carnosus TM300 7551344 Sca_5S_rRNA_B rRNA 5S_rRNA_B NC_012121.1 179211 179325 D 5S ribosomal RNA 179211..179325 Staphylococcus carnosus subsp. carnosus TM300 7551349 Sca_5S_rRNA_C rRNA 5S_rRNA_C NC_012121.1 1454936 1455050 R 5S ribosomal RNA complement(1454936..1455050) Staphylococcus carnosus subsp. carnosus TM300 7552258 Sca_23S_rRNA_C rRNA 23S_rRNA_C NC_012121.1 1455121 1458045 R 23S ribosomal RNA complement(1455121..1458045) Staphylococcus carnosus subsp. carnosus TM300 7551356 Sca_16S_rRNA_C rRNA 16S_rRNA_C NC_012121.1 1458475 1460029 R 16S ribosomal RNA complement(1458475..1460029) Staphylococcus carnosus subsp. carnosus TM300 7552227 Sca_23S_rRNA_D rRNA 23S_rRNA_D NC_012121.1 1585795 1588720 R 23S ribosomal RNA complement(1585795..1588720) Staphylococcus carnosus subsp. carnosus TM300 7551714 Sca_16S_rRNA_D rRNA 16S_rRNA_D NC_012121.1 1588963 1590517 R 16S ribosomal RNA complement(1588963..1590517) Staphylococcus carnosus subsp. carnosus TM300 7551351 Sca_5S_rRNA_E rRNA 5S_rRNA_E NC_012121.1 1684601 1684715 R 5S ribosomal RNA complement(1684601..1684715) Staphylococcus carnosus subsp. carnosus TM300 7552209 Sca_23S_rRNA_E rRNA 23S_rRNA_E NC_012121.1 1684786 1687710 R 23S ribosomal RNA complement(1684786..1687710) Staphylococcus carnosus subsp. carnosus TM300 7551357 Sca_16S_rRNA_E rRNA 16S_rRNA_E NC_012121.1 1688044 1689598 R 16S ribosomal RNA complement(1688044..1689598) Staphylococcus carnosus subsp. carnosus TM300 7552228