-- dump date 20140620_075847 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_187601.1 57865940 3240514 540..677 1 NC_002976.3 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 677 rpmH 3240514 rpmH Staphylococcus epidermidis RP62A 50S ribosomal protein L34 YP_187601.1 540 D 176279 CDS YP_187602.1 57865941 3240515 836..1183 1 NC_002976.3 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 1183 rnpA 3240515 rnpA Staphylococcus epidermidis RP62A ribonuclease P YP_187602.1 836 D 176279 CDS YP_187603.1 57865942 3240516 1329..2708 1 NC_002976.3 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2708 trmE 3240516 trmE Staphylococcus epidermidis RP62A tRNA modification GTPase TrmE YP_187603.1 1329 D 176279 CDS YP_187604.1 57865943 3240517 2781..4658 1 NC_002976.3 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4658 gidA 3240517 gidA Staphylococcus epidermidis RP62A tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_187604.1 2781 D 176279 CDS YP_187605.1 57865944 3240518 4658..5377 1 NC_002976.3 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5377 gidB 3240518 gidB Staphylococcus epidermidis RP62A 16S rRNA methyltransferase GidB YP_187605.1 4658 D 176279 CDS YP_187606.1 57865945 3240519 5421..6260 1 NC_002976.3 identified by similarity to OMNI:SA2735; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partioning protein 6260 3240519 SERP0006 Staphylococcus epidermidis RP62A ParB family chromosome partioning protein YP_187606.1 5421 D 176279 CDS YP_187607.1 57865954 3240510 complement(6313..6459) 1 NC_002976.3 hypothetical protein 6459 3240510 SERP0007 Staphylococcus epidermidis RP62A hypothetical protein YP_187607.1 6313 R 176279 CDS YP_187608.1 57865955 3240511 6522..6683 1 NC_002976.3 hypothetical protein 6683 3240511 SERP0008 Staphylococcus epidermidis RP62A hypothetical protein YP_187608.1 6522 D 176279 CDS YP_187609.1 57865956 3240512 6661..7020 1 NC_002976.3 hypothetical protein 7020 3240512 SERP0009 Staphylococcus epidermidis RP62A hypothetical protein YP_187609.1 6661 D 176279 CDS YP_187610.1 57865957 3240860 7036..7431 1 NC_002976.3 hypothetical protein 7431 3240860 SERP0010 Staphylococcus epidermidis RP62A hypothetical protein YP_187610.1 7036 D 176279 CDS YP_187611.1 57865958 3240861 7397..7936 1 NC_002976.3 transcriptional regulator 7936 3240861 SERP0011 Staphylococcus epidermidis RP62A transcriptional regulator YP_187611.1 7397 D 176279 CDS YP_187612.1 57865959 3240862 8156..8725 1 NC_002976.3 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 8725 3240862 SERP0012 Staphylococcus epidermidis RP62A Cro/CI family transcriptional regulator YP_187612.1 8156 D 176279 CDS YP_187613.1 57865960 3240863 complement(8913..9542) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0199; hypothetical protein 9542 3240863 SERP0013 Staphylococcus epidermidis RP62A hypothetical protein YP_187613.1 8913 R 176279 CDS YP_187614.1 57865961 3240864 9780..10898 1 NC_002976.3 identified by similarity to GP:14245964; RND efflux transporter 10898 3240864 SERP0014 Staphylococcus epidermidis RP62A RND efflux transporter YP_187614.1 9780 D 176279 CDS YP_187615.1 57865968 3242378 10895..11581 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 11581 3242378 SERP0015 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187615.1 10895 D 176279 CDS YP_187616.1 57865969 3242379 11574..12770 1 NC_002976.3 identified by match to protein family HMM PF02687; ABC transporter permease 12770 3242379 SERP0016 Staphylococcus epidermidis RP62A ABC transporter permease YP_187616.1 11574 D 176279 CDS YP_187617.1 57865970 3242380 12806..12898 1 NC_002976.3 hypothetical protein 12898 3242380 SERP0017 Staphylococcus epidermidis RP62A hypothetical protein YP_187617.1 12806 D 176279 CDS YP_187618.1 57865971 3242381 13768..15813 1 NC_002976.3 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase 15813 3242381 SERP0018 Staphylococcus epidermidis RP62A lipase YP_187618.1 13768 D 176279 CDS YP_187619.1 57865972 3242382 complement(15885..16076) 1 NC_002976.3 identified by similarity to OMNI:SA2726; hypothetical protein 16076 3242382 SERP0019 Staphylococcus epidermidis RP62A hypothetical protein YP_187619.1 15885 R 176279 CDS YP_187620.1 57865973 3242383 complement(16121..18001) 1 NC_002976.3 identified by similarity to OMNI:NTL01BH0754; match to protein family HMM PF02687; ABC transporter permease 18001 3242383 SERP0020 Staphylococcus epidermidis RP62A ABC transporter permease YP_187620.1 16121 R 176279 CDS YP_187621.1 57865974 3242384 complement(17991..18749) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 18749 3242384 SERP0021 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187621.1 17991 R 176279 CDS YP_187622.1 57865975 3242385 19043..19423 1 NC_002976.3 hypothetical protein 19423 3242385 SERP0022 Staphylococcus epidermidis RP62A hypothetical protein YP_187622.1 19043 D 176279 CDS YP_187623.1 57865976 3242386 complement(19519..19659) 1 NC_002976.3 hypothetical protein 19659 3242386 SERP0023 Staphylococcus epidermidis RP62A hypothetical protein YP_187623.1 19519 R 176279 CDS YP_187624.1 57865986 3242664 20149..20727 1 NC_002976.3 identified by match to protein family HMM PF00461; signal peptidase I 20727 3242664 SERP0024 Staphylococcus epidermidis RP62A signal peptidase I YP_187624.1 20149 D 176279 CDS YP_187625.1 57865987 3242488 complement(20789..22153) 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator family transporter 22153 3242488 SERP0025 Staphylococcus epidermidis RP62A major facilitator family transporter YP_187625.1 20789 R 176279 CDS YP_187626.1 57865988 3242489 23557..23814 1 NC_002976.3 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; sdrF protein, truncation 23814 3242489 SERP0026 Staphylococcus epidermidis RP62A sdrF protein, truncation YP_187626.1 23557 D 176279 CDS YP_187627.1 57865989 3242490 complement(23740..23994) 1 NC_002976.3 ABC transporter ATP-binding protein 23994 3242490 SERP0027 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187627.1 23740 R 176279 CDS YP_187628.1 57865990 3242491 complement(24022..24756) 1 NC_002976.3 identified by similarity to OMNI:SA0421; hypothetical protein 24756 3242491 SERP0028 Staphylococcus epidermidis RP62A hypothetical protein YP_187628.1 24022 R 176279 CDS YP_187629.1 57865991 3242492 complement(24753..24956) 1 NC_002976.3 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 24956 3242492 SERP0029 Staphylococcus epidermidis RP62A Cro/CI family transcriptional regulator YP_187629.1 24753 R 176279 CDS YP_187630.1 57865992 3242493 25242..25442 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2428; hypothetical protein 25442 3242493 SERP0030 Staphylococcus epidermidis RP62A hypothetical protein YP_187630.1 25242 D 176279 CDS YP_187631.1 57865993 3242494 complement(25560..25652) 1 NC_002976.3 hypothetical protein 25652 3242494 SERP0031 Staphylococcus epidermidis RP62A hypothetical protein YP_187631.1 25560 R 176279 CDS YP_187632.1 57866008 3242978 26288..27472 1 NC_002976.3 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 27472 3242978 SERP0032 Staphylococcus epidermidis RP62A acetyl-CoA acetyltransferase YP_187632.1 26288 D 176279 CDS YP_187633.1 57866009 3242979 complement(27690..28433) 1 NC_002976.3 identified by similarity to OMNI:SA0427; match to protein family HMM PF04199; cyclase 28433 3242979 SERP0033 Staphylococcus epidermidis RP62A cyclase YP_187633.1 27690 R 176279 CDS YP_187634.1 57865964 3240867 complement(28455..30701) 1 NC_002976.3 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 30701 metE 3240867 metE Staphylococcus epidermidis RP62A 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_187634.1 28455 R 176279 CDS YP_187635.1 57865965 3240868 complement(30698..32536) 1 NC_002976.3 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein 32536 3240868 SERP0035 Staphylococcus epidermidis RP62A bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein YP_187635.1 30698 R 176279 CDS YP_187636.1 57865966 3240869 complement(32490..33665) 1 NC_002976.3 identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 33665 3240869 SERP0036 Staphylococcus epidermidis RP62A trans-sulfuration enzyme family protein YP_187636.1 32490 R 176279 CDS YP_187637.1 57865967 3242377 complement(33662..34765) 1 NC_002976.3 identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 34765 3242377 SERP0037 Staphylococcus epidermidis RP62A trans-sulfuration enzyme family protein YP_187637.1 33662 R 176279 CDS YP_187638.1 57865977 3242655 35494..36336 1 NC_002976.3 identified by similarity to EGAD:13122; match to protein family HMM PF02195; match to protein family HMM TIGR00180; spoOJ protein 36336 3242655 SERP0038 Staphylococcus epidermidis RP62A spoOJ protein YP_187638.1 35494 D 176279 CDS YP_187639.1 57865978 3242656 36497..37372 1 NC_002976.3 identified by similarity to OMNI:SA0433; match to protein family HMM PF00924; hypothetical protein 37372 3242656 SERP0039 Staphylococcus epidermidis RP62A hypothetical protein YP_187639.1 36497 D 176279 CDS YP_187640.1 57865979 3242657 37393..37596 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0362; hypothetical protein 37596 3242657 SERP0040 Staphylococcus epidermidis RP62A hypothetical protein YP_187640.1 37393 D 176279 CDS YP_187641.1 57865980 3242658 37608..38705 1 NC_002976.3 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 38705 3242658 SERP0041 Staphylococcus epidermidis RP62A GTP-dependent nucleic acid-binding protein EngD YP_187641.1 37608 D 176279 CDS YP_187642.1 57865981 3242659 complement(38938..39129) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0364; hypothetical protein 39129 3242659 SERP0042 Staphylococcus epidermidis RP62A hypothetical protein YP_187642.1 38938 R 176279 CDS YP_187643.1 57865982 3242660 complement(39203..40012) 1 NC_002976.3 lysozyme domain-containing protein 40012 3242660 SERP0043 Staphylococcus epidermidis RP62A lysozyme domain-containing protein YP_187643.1 39203 R 176279 CDS YP_187644.1 57865983 3242661 40397..40693 1 NC_002976.3 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 40693 rpsF 3242661 rpsF Staphylococcus epidermidis RP62A 30S ribosomal protein S6 YP_187644.1 40397 D 176279 CDS YP_187645.1 57865984 3242662 40716..41225 1 NC_002976.3 identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 41225 ssb 3242662 ssb Staphylococcus epidermidis RP62A single-stranded DNA-binding protein YP_187645.1 40716 D 176279 CDS YP_187646.1 57865985 3242663 41270..41512 1 NC_002976.3 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 41512 rpsR 3242663 rpsR Staphylococcus epidermidis RP62A 30S ribosomal protein S18 YP_187646.1 41270 D 176279 CDS YP_187647.1 57865994 3242496 complement(41982..42242) 1 NC_002976.3 hypothetical protein 42242 3242496 SERP0048 Staphylococcus epidermidis RP62A hypothetical protein YP_187647.1 41982 R 176279 CDS YP_187648.1 57865995 3242497 42464..42718 1 NC_002976.3 identified by similarity to OMNI:SA0446; match to protein family HMM PF04226; hypothetical protein 42718 3242497 SERP0049 Staphylococcus epidermidis RP62A hypothetical protein YP_187648.1 42464 D 176279 CDS YP_187649.1 57865996 3240522 42835..42930 1 NC_002976.3 hypothetical protein 42930 3240522 SERP0050 Staphylococcus epidermidis RP62A hypothetical protein YP_187649.1 42835 D 176279 CDS YP_187650.1 57865997 3240523 43190..43822 1 NC_002976.3 identified by match to protein family HMM PF01810; amino acid transporter LysE 43822 3240523 SERP0051 Staphylococcus epidermidis RP62A amino acid transporter LysE YP_187650.1 43190 D 176279 CDS YP_187651.1 57865998 3240524 43843..44433 1 NC_002976.3 identified by match to protein family HMM PF00300; phosphoglycerate mutase 44433 3240524 SERP0052 Staphylococcus epidermidis RP62A phosphoglycerate mutase YP_187651.1 43843 D 176279 CDS YP_187652.1 57865999 3240526 complement(44849..45079) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0377; hypothetical protein 45079 3240526 SERP0054 Staphylococcus epidermidis RP62A hypothetical protein YP_187652.1 44849 R 176279 CDS YP_187653.1 57866000 3240527 45180..45278 1 NC_002976.3 hypothetical protein 45278 3240527 SERP0055 Staphylococcus epidermidis RP62A hypothetical protein YP_187653.1 45180 D 176279 CDS YP_187654.1 57866001 3240528 45300..45425 1 NC_002976.3 hypothetical protein 45425 3240528 SERP0056 Staphylococcus epidermidis RP62A hypothetical protein YP_187654.1 45300 D 176279 CDS YP_187655.1 57866002 3240529 complement(45446..46069) 1 NC_002976.3 identified by similarity to OMNI:SA0449; hypothetical protein 46069 3240529 SERP0057 Staphylococcus epidermidis RP62A hypothetical protein YP_187655.1 45446 R 176279 CDS YP_187656.1 57866003 3240530 46212..46340 1 NC_002976.3 hypothetical protein 46340 3240530 SERP0058 Staphylococcus epidermidis RP62A hypothetical protein YP_187656.1 46212 D 176279 CDS YP_187657.1 57866004 3242974 complement(46330..47853) 1 NC_002976.3 identified by similarity to EGAD:30995; match to protein family HMM PF00070; alkyl hydroperoxide reductase 47853 ahpF 3242974 ahpF Staphylococcus epidermidis RP62A alkyl hydroperoxide reductase YP_187657.1 46330 R 176279 CDS YP_187658.1 57866005 3242975 complement(47868..48437) 1 NC_002976.3 identified by similarity to EGAD:37649; match to protein family HMM PF00578; alkyl hydroperoxide reductase 48437 ahpC 3242975 ahpC Staphylococcus epidermidis RP62A alkyl hydroperoxide reductase YP_187658.1 47868 R 176279 CDS YP_187659.1 57866006 3242976 complement(48882..49661) 1 NC_002976.3 identified by match to protein family HMM PF01689; 2-keto-4-pentenoate hydratase 49661 3242976 SERP0061 Staphylococcus epidermidis RP62A 2-keto-4-pentenoate hydratase YP_187659.1 48882 R 176279 CDS YP_187660.1 57866007 3242977 49802..50557 1 NC_002976.3 identified by similarity to EGAD:18715; match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase 50557 3242977 SERP0062 Staphylococcus epidermidis RP62A NAD(P)H-flavin oxidoreductase YP_187660.1 49802 D 176279 CDS YP_187661.1 57866016 3241649 complement(50679..52067) 1 NC_002976.3 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 52067 3241649 SERP0063 Staphylococcus epidermidis RP62A sodium:dicarboxylate symporter family protein YP_187661.1 50679 R 176279 CDS YP_187662.1 57866017 3241650 complement(52376..53278) 1 NC_002976.3 identified by similarity to OMNI:SA0455; hypothetical protein 53278 3241650 SERP0064 Staphylococcus epidermidis RP62A hypothetical protein YP_187662.1 52376 R 176279 CDS YP_187663.1 57866018 3241651 complement(53404..54069) 1 NC_002976.3 identified by similarity to OMNI:SA0456; hypothetical protein 54069 3241651 SERP0065 Staphylococcus epidermidis RP62A hypothetical protein YP_187663.1 53404 R 176279 CDS YP_187664.1 57866019 3241652 complement(54197..54604) 1 NC_002976.3 identified by similarity to OMNI:SA0457; hypothetical protein 54604 3241652 SERP0066 Staphylococcus epidermidis RP62A hypothetical protein YP_187664.1 54197 R 176279 CDS YP_187665.1 57866020 3241653 55201..55779 1 NC_002976.3 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 55779 xpt 3241653 xpt Staphylococcus epidermidis RP62A xanthine phosphoribosyltransferase YP_187665.1 55201 D 176279 CDS YP_187666.1 57866021 3241654 55779..57047 1 NC_002976.3 identified by similarity to EGAD:30678; match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 57047 pbuX 3241654 pbuX Staphylococcus epidermidis RP62A xanthine permease YP_187666.1 55779 D 176279 CDS YP_187667.1 57866022 3241655 57085..58551 1 NC_002976.3 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF01574; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 58551 guaB 3241655 guaB Staphylococcus epidermidis RP62A inosine-5'-monophosphate dehydrogenase YP_187667.1 57085 D 176279 CDS YP_187668.1 57866023 3241656 58718..60259 1 NC_002976.3 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 60259 guaA 3241656 guaA Staphylococcus epidermidis RP62A GMP synthase YP_187668.1 58718 D 176279 CDS YP_187669.1 57866032 3242673 complement(60500..61405) 1 NC_002976.3 identified by similarity to OMNI:SA0440; hypothetical protein 61405 3242673 SERP0071 Staphylococcus epidermidis RP62A hypothetical protein YP_187669.1 60500 R 176279 CDS YP_187670.1 57866033 3242562 complement(62664..63218) 1 NC_002976.3 identified by similarity to GP:14247774; hypothetical protein 63218 3242562 SERP0073 Staphylococcus epidermidis RP62A hypothetical protein YP_187670.1 62664 R 176279 CDS YP_187671.1 57866034 3242563 complement(63328..63945) 1 NC_002976.3 hypothetical protein 63945 3242563 SERP0074 Staphylococcus epidermidis RP62A hypothetical protein YP_187671.1 63328 R 176279 CDS YP_187672.1 57866035 3242564 complement(64144..64260) 1 NC_002976.3 hypothetical protein 64260 3242564 SERP0075 Staphylococcus epidermidis RP62A hypothetical protein YP_187672.1 64144 R 176279 CDS YP_187673.1 57866036 3242565 64836..64967 1 NC_002976.3 identified by similarity to OMNI:SA0071; hypothetical protein 64967 3242565 SERP0076 Staphylococcus epidermidis RP62A hypothetical protein YP_187673.1 64836 D 176279 CDS YP_187674.1 57866037 3242566 complement(64980..65096) 1 NC_002976.3 identified by similarity to GP:8918792; transposase, truncation 65096 3242566 SERP0077 Staphylococcus epidermidis RP62A transposase, truncation YP_187674.1 64980 R 176279 CDS YP_187675.1 57866038 3242567 65272..66300 1 NC_002976.3 identified by similarity to EGAD:33437; perfringolysin O regulator protein 66300 pfoR 3242567 pfoR Staphylococcus epidermidis RP62A perfringolysin O regulator protein YP_187675.1 65272 D 176279 CDS YP_187676.1 57866047 3241767 66815..67198 1 NC_002976.3 identified by similarity to OMNI:NTL03PA01359; match to protein family HMM PF00903; hypothetical protein 67198 3241767 SERP0079 Staphylococcus epidermidis RP62A hypothetical protein YP_187676.1 66815 D 176279 CDS YP_187677.1 57866048 3241768 67369..68571 1 NC_002976.3 identified by match to protein family HMM PF02492; cobalamin synthesis protein 68571 3241768 SERP0080 Staphylococcus epidermidis RP62A cobalamin synthesis protein YP_187677.1 67369 D 176279 CDS YP_187678.1 57866049 3241769 complement(68810..69073) 1 NC_002976.3 hypothetical protein 69073 3241769 SERP0081 Staphylococcus epidermidis RP62A hypothetical protein YP_187678.1 68810 R 176279 CDS YP_187679.1 57866050 3241770 69325..69438 1 NC_002976.3 hypothetical protein 69438 3241770 SERP0082 Staphylococcus epidermidis RP62A hypothetical protein YP_187679.1 69325 D 176279 CDS YP_187681.1 57866051 3242418 70144..71640 1 NC_002976.3 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit 5 71640 nuoF 3242418 nuoF Staphylococcus epidermidis RP62A NADH dehydrogenase subunit 5 YP_187681.1 70144 D 176279 CDS YP_187682.1 57866052 3242419 71658..74225 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0430; hypothetical protein 74225 3242419 SERP0085 Staphylococcus epidermidis RP62A hypothetical protein YP_187682.1 71658 D 176279 CDS YP_187683.1 57866053 3242420 74236..74313 1 NC_002976.3 hypothetical protein 74313 3242420 SERP0086 Staphylococcus epidermidis RP62A hypothetical protein YP_187683.1 74236 D 176279 CDS YP_187684.1 57866054 3242421 74338..74706 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0431; hypothetical protein 74706 3242421 SERP0087 Staphylococcus epidermidis RP62A hypothetical protein YP_187684.1 74338 D 176279 CDS YP_187685.1 57866055 3242422 complement(74748..74996) 1 NC_002976.3 identified by similarity to OMNI:SA0497; hypothetical protein 74996 3242422 SERP0088 Staphylococcus epidermidis RP62A hypothetical protein YP_187685.1 74748 R 176279 CDS YP_187686.1 57866064 3240896 75248..75919 1 NC_002976.3 identified by match to protein family HMM PF01569; PAP2 family protein 75919 3240896 SERP0089 Staphylococcus epidermidis RP62A PAP2 family protein YP_187686.1 75248 D 176279 CDS YP_187687.1 57866065 3240897 76026..76754 1 NC_002976.3 identified by similarity to EGAD:18058; carboxylesterase 76754 3240897 SERP0090 Staphylococcus epidermidis RP62A carboxylesterase YP_187687.1 76026 D 176279 CDS YP_187688.1 57866066 3240898 76769..77011 1 NC_002976.3 hypothetical protein 77011 3240898 SERP0091 Staphylococcus epidermidis RP62A hypothetical protein YP_187688.1 76769 D 176279 CDS YP_187689.1 57866067 3240899 77156..78484 1 NC_002976.3 identified by match to protein family HMM PF00209; sodium-dependent transporter 78484 3240899 SERP0092 Staphylococcus epidermidis RP62A sodium-dependent transporter YP_187689.1 77156 D 176279 CDS YP_187690.1 57866068 3240900 complement(78663..79202) 1 NC_002976.3 identified by similarity to EGAD:162731; hypothetical protein 79202 3240900 SERP0093 Staphylococcus epidermidis RP62A hypothetical protein YP_187690.1 78663 R 176279 CDS YP_187691.1 57866069 3240901 79505..80413 1 NC_002976.3 identified by match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase family protein 80413 3240901 SERP0094 Staphylococcus epidermidis RP62A cysteine synthase/cystathionine beta-synthase family protein YP_187691.1 79505 D 176279 CDS YP_187692.1 57866070 3240902 80406..81551 1 NC_002976.3 identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 81551 3240902 SERP0095 Staphylococcus epidermidis RP62A trans-sulfuration enzyme family protein YP_187692.1 80406 D 176279 CDS YP_187693.1 57866071 3240903 81701..81805 1 NC_002976.3 hypothetical protein 81805 3240903 SERP0096 Staphylococcus epidermidis RP62A hypothetical protein YP_187693.1 81701 D 176279 CDS YP_187694.1 57866079 3240538 81798..82823 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 82823 3240538 SERP0097 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187694.1 81798 D 176279 CDS YP_187695.1 57866080 3240539 82826..83485 1 NC_002976.3 identified by match to protein family HMM PF00528; ABC transporter permease 83485 3240539 SERP0098 Staphylococcus epidermidis RP62A ABC transporter permease YP_187695.1 82826 D 176279 CDS YP_187696.1 57866081 3240540 83529..84374 1 NC_002976.3 identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 84374 3240540 SERP0099 Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_187696.1 83529 D 176279 CDS YP_187697.1 57866082 3241005 84899..85873 1 NC_002976.3 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 85873 3241005 SERP0100 Staphylococcus epidermidis RP62A LysM domain-containing protein YP_187697.1 84899 D 176279 CDS YP_187698.1 57866083 3241006 complement(86000..87505) 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 87505 3241006 SERP0101 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_187698.1 86000 R 176279 CDS YP_187699.1 57866084 3241007 complement(87880..88158) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0442; hypothetical protein 88158 3241007 SERP0102 Staphylococcus epidermidis RP62A hypothetical protein YP_187699.1 87880 R 176279 CDS YP_187700.1 57866085 3241008 88346..88732 1 NC_002976.3 identified by match to protein family HMM PF00293; MutT/nudix family protein 88732 3241008 SERP0103 Staphylococcus epidermidis RP62A MutT/nudix family protein YP_187700.1 88346 D 176279 CDS YP_187701.1 57866086 3241009 89012..89131 1 NC_002976.3 hypothetical protein 89131 3241009 SERP0104 Staphylococcus epidermidis RP62A hypothetical protein YP_187701.1 89012 D 176279 CDS YP_187702.1 57866094 3242675 complement(89245..90030) 1 NC_002976.3 identified by similarity to OMNI:SA0511; hypothetical protein 90030 3242675 SERP0105 Staphylococcus epidermidis RP62A hypothetical protein YP_187702.1 89245 R 176279 CDS YP_187703.1 57866095 3242676 complement(90027..91139) 1 NC_002976.3 identified by similarity to OMNI:SA0512; hypothetical protein 91139 3242676 SERP0106 Staphylococcus epidermidis RP62A hypothetical protein YP_187703.1 90027 R 176279 CDS YP_187704.1 57866096 3242677 complement(91276..92157) 1 NC_002976.3 identified by similarity to EGAD:6257; match to protein family HMM PF00126; GltC family transcriptional regulator 92157 3242677 SERP0107 Staphylococcus epidermidis RP62A GltC family transcriptional regulator YP_187704.1 91276 R 176279 CDS YP_187705.1 57866097 3242679 96862..98325 1 NC_002976.3 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 98325 gltD 3242679 gltD Staphylococcus epidermidis RP62A glutamate synthase subunit beta YP_187705.1 96862 D 176279 CDS YP_187706.1 57866098 3242680 complement(98558..99379) 1 NC_002976.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 99379 3242680 SERP0110 Staphylococcus epidermidis RP62A LysR family transcriptional regulator YP_187706.1 98558 R 176279 CDS YP_187707.1 57866099 3242681 99494..100489 1 NC_002976.3 identified by match to protein family HMM PF03601; hypothetical protein 100489 3242681 SERP0111 Staphylococcus epidermidis RP62A hypothetical protein YP_187707.1 99494 D 176279 CDS YP_187708.1 57866108 3241304 100691..100816 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0452; hypothetical protein 100816 3241304 SERP0112 Staphylococcus epidermidis RP62A hypothetical protein YP_187708.1 100691 D 176279 CDS YP_187709.1 57866109 3241305 101647..102177 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 102177 3241305 SERP0113 Staphylococcus epidermidis RP62A acetyltransferase YP_187709.1 101647 D 176279 CDS YP_187710.1 57866110 3241306 102244..103950 1 NC_002976.3 identified by similarity to SP:P09122; match to protein family HMM PF00004; DNA polymerase III, gamma and tau subunits 103950 dnaX 3241306 dnaX Staphylococcus epidermidis RP62A DNA polymerase III, gamma and tau subunits YP_187710.1 102244 D 176279 CDS YP_187711.1 57866111 3241802 104039..104356 1 NC_002976.3 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 104356 3241802 SERP0115 Staphylococcus epidermidis RP62A hypothetical protein YP_187711.1 104039 D 176279 CDS YP_187712.1 57866112 3241803 104363..104959 1 NC_002976.3 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 104959 recR 3241803 recR Staphylococcus epidermidis RP62A recombination protein RecR YP_187712.1 104363 D 176279 CDS YP_187713.1 57866113 3241804 105049..105141 1 NC_002976.3 identified by similarity to OMNI:SA1097; hypothetical protein 105141 3241804 SERP0117 Staphylococcus epidermidis RP62A hypothetical protein YP_187713.1 105049 D 176279 CDS YP_187714.1 57866114 3241805 111135..111668 1 NC_002976.3 identified by match to protein family HMM PF00583; spermidine N1-acetyltransferase 111668 3241805 SERP0118 Staphylococcus epidermidis RP62A spermidine N1-acetyltransferase YP_187714.1 111135 D 176279 CDS YP_187715.1 57866010 3242980 111697..113034 1 NC_002976.3 identified by match to protein family HMM PF01276; Orn/Lys/Arg decarboxylase 113034 3242980 SERP0119 Staphylococcus epidermidis RP62A Orn/Lys/Arg decarboxylase YP_187715.1 111697 D 176279 CDS YP_187716.1 57866011 3242981 113038..113649 1 NC_002976.3 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 113649 tmk 3242981 tmk Staphylococcus epidermidis RP62A thymidylate kinase YP_187716.1 113038 D 176279 CDS YP_187717.1 57866012 3242982 113683..114012 1 NC_002976.3 identified by similarity to OMNI:SA0525; hypothetical protein 114012 3242982 SERP0121 Staphylococcus epidermidis RP62A hypothetical protein YP_187717.1 113683 D 176279 CDS YP_187718.1 57866013 3242983 114318..115244 1 NC_002976.3 identified by similarity to EGAD:13071; DNA polymerase III, delta prime subunit 115244 3242983 SERP0122 Staphylococcus epidermidis RP62A DNA polymerase III, delta prime subunit YP_187718.1 114318 D 176279 CDS YP_187719.1 57866014 3241647 115246..116049 1 NC_002976.3 identified by similarity to OMNI:SA0527; match to protein family HMM PF04468; hypothetical protein 116049 3241647 SERP0123 Staphylococcus epidermidis RP62A hypothetical protein YP_187719.1 115246 D 176279 CDS YP_187720.1 57866015 3241648 116066..116413 1 NC_002976.3 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 116413 3241648 SERP0124 Staphylococcus epidermidis RP62A DNA replication intiation control protein YabA YP_187720.1 116066 D 176279 CDS YP_187721.1 57866024 3242665 116509..117234 1 NC_002976.3 identified by similarity to OMNI:SA0529; hypothetical protein 117234 3242665 SERP0125 Staphylococcus epidermidis RP62A hypothetical protein YP_187721.1 116509 D 176279 CDS YP_187722.1 57866025 3242666 117227..117475 1 NC_002976.3 identified by similarity to OMNI:SA0530; match to protein family HMM PF01541; hypothetical protein 117475 3242666 SERP0126 Staphylococcus epidermidis RP62A hypothetical protein YP_187722.1 117227 D 176279 CDS YP_187723.1 57866026 3242667 117477..118316 1 NC_002976.3 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole family methyltransferase 118316 3242667 SERP0127 Staphylococcus epidermidis RP62A tetrapyrrole family methyltransferase YP_187723.1 117477 D 176279 CDS YP_187724.1 57866027 3242668 118526..120496 1 NC_002976.3 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 120496 metS 3242668 metS Staphylococcus epidermidis RP62A methionyl-tRNA synthetase YP_187724.1 118526 D 176279 CDS YP_187725.1 57866028 3242669 120524..121294 1 NC_002976.3 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family deoxyribonuclease 121294 3242669 SERP0129 Staphylococcus epidermidis RP62A TatD family deoxyribonuclease YP_187725.1 120524 D 176279 CDS YP_187726.1 57866029 3242670 121501..122046 1 NC_002976.3 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-related protein 122046 3242670 SERP0130 Staphylococcus epidermidis RP62A primase-related protein YP_187726.1 121501 D 176279 CDS YP_187727.1 57866030 3242671 122047..122937 1 NC_002976.3 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 122937 ksgA 3242671 ksgA Staphylococcus epidermidis RP62A dimethyladenosine transferase YP_187727.1 122047 D 176279 CDS YP_187728.1 57866031 3242672 123037..123300 1 NC_002976.3 identified by similarity to OMNI:SA0537; hypothetical protein 123300 3242672 SERP0132 Staphylococcus epidermidis RP62A hypothetical protein YP_187728.1 123037 D 176279 CDS YP_187729.1 57866039 3242568 123693..124541 1 NC_002976.3 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 124541 ipk 3242568 ipk Staphylococcus epidermidis RP62A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_187729.1 123693 D 176279 CDS YP_187730.1 57866040 3242569 124556..125380 1 NC_002976.3 identified by similarity to EGAD:16043; match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 125380 purR 3242569 purR Staphylococcus epidermidis RP62A pur operon repressor YP_187730.1 124556 D 176279 CDS YP_187731.1 57866041 3242570 125402..125782 1 NC_002976.3 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 125782 3242570 SERP0135 Staphylococcus epidermidis RP62A endoribonuclease L-PSP YP_187731.1 125402 D 176279 CDS YP_187732.1 57866042 3241762 125842..126150 1 NC_002976.3 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 126150 spoVG 3241762 spoVG Staphylococcus epidermidis RP62A regulatory protein SpoVG YP_187732.1 125842 D 176279 CDS YP_187733.1 57866043 3241763 126760..128115 1 NC_002976.3 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 128115 glmU 3241763 glmU Staphylococcus epidermidis RP62A bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_187733.1 126760 D 176279 CDS YP_187734.1 57866044 3241764 128259..129224 1 NC_002976.3 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 129224 prsA 3241764 prsA Staphylococcus epidermidis RP62A ribose-phosphate pyrophosphokinase YP_187734.1 128259 D 176279 CDS YP_187735.1 57866045 3241765 129394..130053 1 NC_002976.3 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 130053 rplY 3241765 rplY Staphylococcus epidermidis RP62A 50S ribosomal protein L25 YP_187735.1 129394 D 176279 CDS YP_187736.1 57866046 3241766 130306..130878 1 NC_002976.3 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 130878 pth 3241766 pth Staphylococcus epidermidis RP62A peptidyl-tRNA hydrolase YP_187736.1 130306 D 176279 CDS YP_187737.1 57866056 3242423 130875..134384 1 NC_002976.3 identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor 134384 mfd 3242423 mfd Staphylococcus epidermidis RP62A transcription-repair coupling factor YP_187737.1 130875 D 176279 CDS YP_187738.1 57866057 3242424 134374..135915 1 NC_002976.3 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 135915 3242424 SERP0142 Staphylococcus epidermidis RP62A polysaccharide biosynthesis protein YP_187738.1 134374 D 176279 CDS YP_187739.1 57866058 3242425 135912..137102 1 NC_002976.3 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; tetrapyrrole methylase 137102 3242425 SERP0143 Staphylococcus epidermidis RP62A tetrapyrrole methylase YP_187739.1 135912 D 176279 CDS YP_187740.1 57866059 3242426 137099..137362 1 NC_002976.3 identified by match to protein family HMM PF01479; S4 domain-containing protein 137362 3242426 SERP0144 Staphylococcus epidermidis RP62A S4 domain-containing protein YP_187740.1 137099 D 176279 CDS YP_187741.1 57866060 3242427 137386..137787 1 NC_002976.3 identified by match to protein family HMM PF04977; cell-division protein DivIC 137787 3242427 SERP0145 Staphylococcus epidermidis RP62A cell-division protein DivIC YP_187741.1 137386 D 176279 CDS YP_187742.1 57866061 3242428 137881..138282 1 NC_002976.3 identified by similarity to SP:P05055; match to protein family HMM PF00575; hypothetical protein 138282 3242428 SERP0146 Staphylococcus epidermidis RP62A hypothetical protein YP_187742.1 137881 D 176279 CDS YP_187743.1 57866062 3240894 138376..138474 1 NC_002976.3 hypothetical protein 138474 3240894 SERP0147 Staphylococcus epidermidis RP62A hypothetical protein YP_187743.1 138376 D 176279 CDS YP_187744.1 57866063 3240895 138560..139858 1 NC_002976.3 identified by similarity to EGAD:18381; match to protein family HMM PF01171; MesJ/Ycf62 family protein 139858 3240895 SERP0148 Staphylococcus epidermidis RP62A MesJ/Ycf62 family protein YP_187744.1 138560 D 176279 CDS YP_187745.1 57866072 3240531 139858..140397 1 NC_002976.3 identified by similarity to EGAD:18056; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 140397 hpt 3240531 hpt Staphylococcus epidermidis RP62A hypoxanthine phosphoribosyltransferase YP_187745.1 139858 D 176279 CDS YP_187746.1 57866073 3240532 140672..142774 1 NC_002976.3 identified by similarity to EGAD:18839; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH 142774 3240532 SERP0150 Staphylococcus epidermidis RP62A cell division protein FtsH YP_187746.1 140672 D 176279 CDS YP_187747.1 57866074 3240533 143029..143910 1 NC_002976.3 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 143910 hslO 3240533 hslO Staphylococcus epidermidis RP62A heat shock protein 33 YP_187747.1 143029 D 176279 CDS YP_187748.1 57866075 3240534 144247..145179 1 NC_002976.3 identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase 145179 cysK 3240534 cysK Staphylococcus epidermidis RP62A cysteine synthase YP_187748.1 144247 D 176279 CDS YP_187749.1 57866076 3240535 145475..146293 1 NC_002976.3 identified by similarity to EGAD:40403; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 146293 folP 3240535 folP Staphylococcus epidermidis RP62A dihydropteroate synthase YP_187749.1 145475 D 176279 CDS YP_187750.1 57866077 3240536 146271..146636 1 NC_002976.3 identified by similarity to SP:P56740; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 146636 folB 3240536 folB Staphylococcus epidermidis RP62A dihydroneopterin aldolase YP_187750.1 146271 D 176279 CDS YP_187751.1 57866078 3240537 146637..147116 1 NC_002976.3 identified by similarity to EGAD:18680; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 147116 folK 3240537 folK Staphylococcus epidermidis RP62A 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_187751.1 146637 D 176279 CDS YP_187752.1 57866087 3241010 147452..148939 1 NC_002976.3 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 148939 lysS 3241010 lysS Staphylococcus epidermidis RP62A lysyl-tRNA synthetase YP_187752.1 147452 D 176279 CDS YP_187753.1 57866088 3241011 complement(160782..162146) 1 NC_002976.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 162146 3241011 SERP0157 Staphylococcus epidermidis RP62A GntR family transcriptional regulator YP_187753.1 160782 R 176279 CDS YP_187754.1 57866089 3241012 162243..163130 1 NC_002976.3 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 163130 3241012 SERP0158 Staphylococcus epidermidis RP62A pyridoxal biosynthesis lyase PdxS YP_187754.1 162243 D 176279 CDS YP_187755.1 57866090 3241013 163130..163690 1 NC_002976.3 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 163690 3241013 SERP0159 Staphylococcus epidermidis RP62A glutamine amidotransferase subunit PdxT YP_187755.1 163130 D 176279 CDS YP_187756.1 57866091 3241014 164286..165299 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 165299 3241014 SERP0160 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_187756.1 164286 D 176279 CDS YP_187757.1 57866092 3241015 complement(165575..166789) 1 NC_002976.3 identified by similarity to EGAD:30360; match to protein family HMM PF01773; nucleoside permease NupC 166789 nupC 3241015 nupC Staphylococcus epidermidis RP62A nucleoside permease NupC YP_187757.1 165575 R 176279 CDS YP_187758.1 57866093 3242674 166946..167407 1 NC_002976.3 identified by match to protein family HMM PF05848; CtsR family transcriptional regulator 167407 ctsR 3242674 ctsR Staphylococcus epidermidis RP62A CtsR family transcriptional regulator YP_187758.1 166946 D 176279 CDS YP_187759.1 57866100 3242682 167413..167991 1 NC_002976.3 identified by match to protein family HMM PF02151; UvrB/UvrC domain-containing protein 167991 3242682 SERP0163 Staphylococcus epidermidis RP62A UvrB/UvrC domain-containing protein YP_187759.1 167413 D 176279 CDS YP_187760.1 57866101 3241297 167981..168988 1 NC_002976.3 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 168988 3241297 SERP0164 Staphylococcus epidermidis RP62A ATP:guanido phosphotransferase YP_187760.1 167981 D 176279 CDS YP_187761.1 57866102 3241298 169002..171455 1 NC_002976.3 identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpC 171455 clpC 3241298 clpC Staphylococcus epidermidis RP62A ATP-dependent Clp protease, ATP-binding subunit ClpC YP_187761.1 169002 D 176279 CDS YP_187762.1 57866103 3241299 171946..173319 1 NC_002976.3 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 173319 radA 3241299 radA Staphylococcus epidermidis RP62A DNA repair protein RadA YP_187762.1 171946 D 176279 CDS YP_187763.1 57866104 3241300 173355..174431 1 NC_002976.3 identified by similarity to OMNI:SA0573; match to protein family HMM PF01850; match to protein family HMM PF01938; twitching motility protein PilT 174431 3241300 SERP0167 Staphylococcus epidermidis RP62A twitching motility protein PilT YP_187763.1 173355 D 176279 CDS YP_187764.1 57866105 3241301 174830..176284 1 NC_002976.3 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 176284 gltX 3241301 gltX Staphylococcus epidermidis RP62A glutamyl-tRNA synthetase YP_187764.1 174830 D 176279 CDS YP_187765.1 57866106 3241302 176657..177298 1 NC_002976.3 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 177298 cysE 3241302 cysE Staphylococcus epidermidis RP62A serine acetyltransferase YP_187765.1 176657 D 176279 CDS YP_187766.1 57866107 3241303 177282..178682 1 NC_002976.3 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 178682 cysS 3241303 cysS Staphylococcus epidermidis RP62A cysteinyl-tRNA synthetase YP_187766.1 177282 D 176279 CDS YP_187767.1 57866116 3241807 178675..179073 1 NC_002976.3 identified by similarity to GP:14246298; hypothetical protein 179073 3241807 SERP0171 Staphylococcus epidermidis RP62A hypothetical protein YP_187767.1 178675 D 176279 CDS YP_187768.1 57866117 3241808 179081..179830 1 NC_002976.3 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 179830 3241808 SERP0172 Staphylococcus epidermidis RP62A RNA methyltransferase YP_187768.1 179081 D 176279 CDS YP_187769.1 57866118 3241809 179827..180354 1 NC_002976.3 identified by similarity to OMNI:SA0579; hypothetical protein 180354 3241809 SERP0173 Staphylococcus epidermidis RP62A hypothetical protein YP_187769.1 179827 D 176279 CDS YP_187770.1 57866119 3241810 180424..180999 1 NC_002976.3 identified by similarity to EGAD:108360; match to protein family HMM PF04542; RNA polymerase sigma factor sigW 180999 3241810 SERP0174 Staphylococcus epidermidis RP62A RNA polymerase sigma factor sigW YP_187770.1 180424 D 176279 CDS YP_187771.1 57867842 3240442 181123..181266 1 NC_002976.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 181266 rpmG 3240442 rpmG Staphylococcus epidermidis RP62A 50S ribosomal protein L33 YP_187771.1 181123 D 176279 CDS YP_187772.1 57866120 3241811 181329..181511 1 NC_002976.3 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 181511 secE 3241811 secE Staphylococcus epidermidis RP62A preprotein translocase subunit SecE YP_187772.1 181329 D 176279 CDS YP_187773.1 57866121 3241812 181522..182070 1 NC_002976.3 identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 182070 nusG 3241812 nusG Staphylococcus epidermidis RP62A transcription termination/antitermination factor NusG YP_187773.1 181522 D 176279 CDS YP_187774.1 57866122 3242984 182402..182824 1 NC_002976.3 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 182824 rplK 3242984 rplK Staphylococcus epidermidis RP62A 50S ribosomal protein L11 YP_187774.1 182402 D 176279 CDS YP_187775.1 57866130 3242992 183037..183732 1 NC_002976.3 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 183732 rplA 3242992 rplA Staphylococcus epidermidis RP62A 50S ribosomal protein L1 YP_187775.1 183037 D 176279 CDS YP_187776.1 57866131 3242993 184007..184507 1 NC_002976.3 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 184507 rplJ 3242993 rplJ Staphylococcus epidermidis RP62A 50S ribosomal protein L10 YP_187776.1 184007 D 176279 CDS YP_187777.1 57866132 3241171 184545..184913 1 NC_002976.3 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 184913 rplL 3241171 rplL Staphylococcus epidermidis RP62A 50S ribosomal protein L7/L12 YP_187777.1 184545 D 176279 CDS YP_187778.1 57866133 3241172 185105..185713 1 NC_002976.3 identified by similarity to EGAD:35187; match to protein family HMM PF05175; hypothetical protein 185713 3241172 SERP0182 Staphylococcus epidermidis RP62A hypothetical protein YP_187778.1 185105 D 176279 CDS YP_187779.1 57866134 3241173 185929..189480 1 NC_002976.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 189480 rpoB 3241173 rpoB Staphylococcus epidermidis RP62A DNA-directed RNA polymerase subunit beta YP_187779.1 185929 D 176279 CDS YP_187780.1 57866135 3241174 189612..193235 1 NC_002976.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 193235 rpoC 3241174 rpoC Staphylococcus epidermidis RP62A DNA-directed RNA polymerase subunit beta' YP_187780.1 189612 D 176279 CDS YP_187781.1 57866136 3241175 193563..193823 1 NC_002976.3 in Bacillus subtilis this non-essential protein associates with the ribosome; ribosomal protein L7Ae-like 193823 3241175 SERP0185 Staphylococcus epidermidis RP62A ribosomal protein L7Ae-like YP_187781.1 193563 D 176279 CDS YP_187782.1 57866137 3241176 193914..194327 1 NC_002976.3 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 194327 rpsL 3241176 rpsL Staphylococcus epidermidis RP62A 30S ribosomal protein S12 YP_187782.1 193914 D 176279 CDS YP_187783.1 57866146 3241361 194398..194868 1 NC_002976.3 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 194868 rpsG 3241361 rpsG Staphylococcus epidermidis RP62A 30S ribosomal protein S7 YP_187783.1 194398 D 176279 CDS YP_187784.1 57866147 3241362 194988..197069 1 NC_002976.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 197069 fusA 3241362 fusA Staphylococcus epidermidis RP62A elongation factor G YP_187784.1 194988 D 176279 CDS YP_187785.1 57866148 3241363 197288..198472 1 NC_002976.3 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 198472 tuf 3241363 tuf Staphylococcus epidermidis RP62A elongation factor Tu YP_187785.1 197288 D 176279 CDS YP_187786.1 57866149 3241364 complement(198598..199767) 1 NC_002976.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 199767 3241364 SERP0190 Staphylococcus epidermidis RP62A amidohydrolase YP_187786.1 198598 R 176279 CDS YP_187787.1 57866150 3241365 200341..200850 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 200850 3241365 SERP0191 Staphylococcus epidermidis RP62A acetyltransferase YP_187787.1 200341 D 176279 CDS YP_187788.1 57866151 3241366 201102..202052 1 NC_002976.3 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 202052 3241366 SERP0192 Staphylococcus epidermidis RP62A ornithine cyclodeaminase YP_187788.1 201102 D 176279 CDS YP_187789.1 57866152 3241367 complement(202140..202349) 1 NC_002976.3 hypothetical protein 202349 3241367 SERP0193 Staphylococcus epidermidis RP62A hypothetical protein YP_187789.1 202140 R 176279 CDS YP_187790.1 57866153 3242802 202608..203564 1 NC_002976.3 identified by similarity to EGAD:99035; UDP-glucose 4-epimerase 203564 3242802 SERP0194 Staphylococcus epidermidis RP62A UDP-glucose 4-epimerase YP_187790.1 202608 D 176279 CDS YP_187791.1 57866162 3242811 204021..205097 1 NC_002976.3 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 205097 ilvE 3242811 ilvE Staphylococcus epidermidis RP62A branched-chain amino acid aminotransferase YP_187791.1 204021 D 176279 CDS YP_187792.1 57866163 3242812 205369..206085 1 NC_002976.3 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 206085 ispD 3242812 ispD Staphylococcus epidermidis RP62A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_187792.1 205369 D 176279 CDS YP_187793.1 57866164 3242813 206078..207109 1 NC_002976.3 identified by match to protein family HMM PF00107; alcohol dehydrogenase 207109 3242813 SERP0197 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_187793.1 206078 D 176279 CDS YP_187794.1 57866165 3242814 207126..208820 1 NC_002976.3 identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein 208820 3242814 SERP0198 Staphylococcus epidermidis RP62A teichoic acid biosynthesis protein YP_187794.1 207126 D 176279 CDS YP_187795.1 57866166 3242815 209189..209884 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 209884 3242815 SERP0199 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_187795.1 209189 D 176279 CDS YP_187796.1 57866167 3242816 complement(209974..211278) 1 NC_002976.3 identified by similarity to EGAD:45955; similarity to GP:12543558; hypothetical protein 211278 3242816 SERP0200 Staphylococcus epidermidis RP62A hypothetical protein YP_187796.1 209974 R 176279 CDS YP_187797.1 57866168 3242817 complement(211327..212079) 1 NC_002976.3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 212079 fabG 3242817 fabG Staphylococcus epidermidis RP62A 3-ketoacyl-ACP reductase YP_187797.1 211327 R 176279 CDS YP_187798.1 57866178 3241469 complement(212435..213097) 1 NC_002976.3 identified by match to protein family HMM PF01712; deoxynucleoside kinase 213097 3241469 SERP0202 Staphylococcus epidermidis RP62A deoxynucleoside kinase YP_187798.1 212435 R 176279 CDS YP_187799.1 57866179 3241470 complement(213090..213707) 1 NC_002976.3 identified by match to protein family HMM PF01712; deoxynucleoside kinase 213707 3241470 SERP0203 Staphylococcus epidermidis RP62A deoxynucleoside kinase YP_187799.1 213090 R 176279 CDS YP_187800.1 57866115 3241806 213774..214280 1 NC_002976.3 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 214280 3241806 SERP0204 Staphylococcus epidermidis RP62A cytidine/deoxycytidylate deaminase YP_187800.1 213774 D 176279 CDS YP_187801.1 57866123 3242985 214448..215326 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 215326 3242985 SERP0205 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_187801.1 214448 D 176279 CDS YP_187802.1 57866124 3242986 215331..215897 1 NC_002976.3 identified by similarity to GP:10281002; match to protein family HMM PF03358; azoreductase 215897 3242986 SERP0206 Staphylococcus epidermidis RP62A azoreductase YP_187802.1 215331 D 176279 CDS YP_187803.1 57866125 3242987 216458..219136 1 NC_002976.3 Point mutation observed 38 residues upstream of the start, causing translation to begin at the Leu.; identified by similarity to GP:8101007; match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; sdrG protein 219136 3242987 SERP0207 Staphylococcus epidermidis RP62A sdrG protein YP_187803.1 216458 D 176279 CDS YP_187804.1 57866126 3242988 complement(219501..221003) 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 221003 3242988 SERP0208 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_187804.1 219501 R 176279 CDS YP_187805.1 57866127 3242989 complement(221374..221772) 1 NC_002976.3 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 221772 arsC-1 3242989 arsC-1 Staphylococcus epidermidis RP62A arsenate reductase YP_187805.1 221374 R 176279 CDS YP_187806.1 57866128 3242990 complement(221788..223080) 1 NC_002976.3 identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935; arsenical pump membrane protein 223080 3242990 SERP0210 Staphylococcus epidermidis RP62A arsenical pump membrane protein YP_187806.1 221788 R 176279 CDS YP_187807.1 57866129 3242991 complement(223077..223394) 1 NC_002976.3 identified by similarity to EGAD:10168; match to protein family HMM PF01022; arsenical resistance operon repressor 223394 arsR-1 3242991 arsR-1 Staphylococcus epidermidis RP62A arsenical resistance operon repressor YP_187807.1 223077 R 176279 CDS YP_187808.1 57866138 3241177 complement(223538..224416) 1 NC_002976.3 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 224416 3241177 SERP0212 Staphylococcus epidermidis RP62A GTP cyclohydrolase YP_187808.1 223538 R 176279 CDS YP_187809.1 57866139 3241178 complement(224430..225095) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0544; match to protein family HMM PF02585; hypothetical protein 225095 3241178 SERP0213 Staphylococcus epidermidis RP62A hypothetical protein YP_187809.1 224430 R 176279 CDS YP_187810.1 57866140 3241179 complement(225111..225473) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0545; hypothetical protein 225473 3241179 SERP0214 Staphylococcus epidermidis RP62A hypothetical protein YP_187810.1 225111 R 176279 CDS YP_187811.1 57866141 3241180 225758..226489 1 NC_002976.3 identified by similarity to EGAD:107403; match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 226489 nagB 3241180 nagB Staphylococcus epidermidis RP62A glucosamine-6-phosphate isomerase YP_187811.1 225758 D 176279 CDS YP_187812.1 57866142 3241357 226611..227243 1 NC_002976.3 identified by match to protein family HMM PF00215; hexulose-6-phosphate synthase 227243 3241357 SERP0216 Staphylococcus epidermidis RP62A hexulose-6-phosphate synthase YP_187812.1 226611 D 176279 CDS YP_187813.1 57866143 3241358 227245..227793 1 NC_002976.3 identified by match to protein family HMM PF01380; SIS domain-containing protein 227793 3241358 SERP0217 Staphylococcus epidermidis RP62A SIS domain-containing protein YP_187813.1 227245 D 176279 CDS YP_187814.1 57866144 3241359 227914..228561 1 NC_002976.3 identified by match to protein family HMM PF00702; HAD superfamily hydrolase 228561 3241359 SERP0218 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_187814.1 227914 D 176279 CDS YP_187815.1 57866145 3241360 228679..230040 1 NC_002976.3 identified by match to protein family HMM PF00501; long chain fatty acid CoA ligase 230040 3241360 SERP0219 Staphylococcus epidermidis RP62A long chain fatty acid CoA ligase YP_187815.1 228679 D 176279 CDS YP_187816.1 57866154 3242803 230043..231191 1 NC_002976.3 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 231191 3242803 SERP0220 Staphylococcus epidermidis RP62A acetyl-CoA acetyltransferase YP_187816.1 230043 D 176279 CDS YP_187817.1 57866155 3242804 231157..231519 1 NC_002976.3 identified by similarity to OMNI:SA0623; hypothetical protein 231519 3242804 SERP0221 Staphylococcus epidermidis RP62A hypothetical protein YP_187817.1 231157 D 176279 CDS YP_187818.1 57866156 3242805 231523..231783 1 NC_002976.3 identified by similarity to OMNI:SA0624; hypothetical protein 231783 3242805 SERP0222 Staphylococcus epidermidis RP62A hypothetical protein YP_187818.1 231523 D 176279 CDS YP_187819.1 57866157 3242806 231998..233392 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator family transporter 233392 3242806 SERP0223 Staphylococcus epidermidis RP62A major facilitator family transporter YP_187819.1 231998 D 176279 CDS YP_187820.1 57866158 3242807 complement(233685..233864) 1 NC_002976.3 identified by similarity to OMNI:SA0625; hypothetical protein 233864 3242807 SERP0224 Staphylococcus epidermidis RP62A hypothetical protein YP_187820.1 233685 R 176279 CDS YP_187821.1 57866159 3242808 234297..234452 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 234452 3242808 SERP0225 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_187821.1 234297 D 176279 CDS YP_187822.1 57866160 3242809 complement(234682..235515) 1 NC_002976.3 identified by similarity to EGAD:21177; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 235515 thiD-1 3242809 thiD-1 Staphylococcus epidermidis RP62A phosphomethylpyrimidine kinase YP_187822.1 234682 R 176279 CDS YP_187823.1 57866161 3242810 complement(235619..236599) 1 NC_002976.3 identified by similarity to EGAD:17563; match to protein family HMM PF02275; penicillin V acylase 236599 3242810 SERP0227 Staphylococcus epidermidis RP62A penicillin V acylase YP_187823.1 235619 R 176279 CDS YP_187824.1 57866169 3242818 236766..237416 1 NC_002976.3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 237416 ung 3242818 ung Staphylococcus epidermidis RP62A uracil-DNA glycosylase YP_187824.1 236766 D 176279 CDS YP_187825.1 57866170 3242819 237426..237785 1 NC_002976.3 identified by similarity to OMNI:SA0628; hypothetical protein 237785 3242819 SERP0229 Staphylococcus epidermidis RP62A hypothetical protein YP_187825.1 237426 D 176279 CDS YP_187826.1 57866171 3242820 237807..238178 1 NC_002976.3 identified by similarity to OMNI:SA0629; match to protein family HMM PF04241; hypothetical protein 238178 3242820 SERP0230 Staphylococcus epidermidis RP62A hypothetical protein YP_187826.1 237807 D 176279 CDS YP_187827.1 57866172 3242821 complement(238162..238254) 1 NC_002976.3 hypothetical protein 238254 3242821 SERP0231 Staphylococcus epidermidis RP62A hypothetical protein YP_187827.1 238162 R 176279 CDS YP_187828.1 57866173 3242822 238294..239784 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 239784 3242822 SERP0232 Staphylococcus epidermidis RP62A amino acid permease YP_187828.1 238294 D 176279 CDS YP_187829.1 57866174 3242823 complement(239945..240397) 1 NC_002976.3 identified by similarity to OMNI:SA0631; hypothetical protein 240397 3242823 SERP0233 Staphylococcus epidermidis RP62A hypothetical protein YP_187829.1 239945 R 176279 CDS YP_187830.1 57866175 3241466 complement(240410..241174) 1 NC_002976.3 hypothetical protein 241174 3241466 SERP0234 Staphylococcus epidermidis RP62A hypothetical protein YP_187830.1 240410 R 176279 CDS YP_187831.1 57866176 3241467 complement(241677..242426) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0564; heme peroxidase 242426 3241467 SERP0235 Staphylococcus epidermidis RP62A heme peroxidase YP_187831.1 241677 R 176279 CDS YP_187832.1 57866177 3241468 242597..243586 1 NC_002976.3 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 243586 eutD 3241468 eutD Staphylococcus epidermidis RP62A phosphotransacetylase YP_187832.1 242597 D 176279 CDS YP_187833.1 57866186 3242301 243586..244425 1 NC_002976.3 identified by match to protein family HMM PF02539; match to protein family HMM PF03099; lipoate-protein ligase A 244425 3242301 SERP0237 Staphylococcus epidermidis RP62A lipoate-protein ligase A YP_187833.1 243586 D 176279 CDS YP_187834.1 57866187 3242302 245118..246038 1 NC_002976.3 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; mevalonate kinase 246038 mvk 3242302 mvk Staphylococcus epidermidis RP62A mevalonate kinase YP_187834.1 245118 D 176279 CDS YP_187835.1 57866188 3242303 246043..247026 1 NC_002976.3 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240; mevalonate diphosphate decarboxylase 247026 mvaD 3242303 mvaD Staphylococcus epidermidis RP62A mevalonate diphosphate decarboxylase YP_187835.1 246043 D 176279 CDS YP_187836.1 57866189 3242304 247039..248115 1 NC_002976.3 identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220; phosphomevalonate kinase 248115 3242304 SERP0240 Staphylococcus epidermidis RP62A phosphomevalonate kinase YP_187836.1 247039 D 176279 CDS YP_187837.1 57866190 3242305 248326..248667 1 NC_002976.3 identified by similarity to OMNI:SA0639; hypothetical protein 248667 3242305 SERP0241 Staphylococcus epidermidis RP62A hypothetical protein YP_187837.1 248326 D 176279 CDS YP_187838.1 57866191 3242306 complement(249056..250387) 1 NC_002976.3 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase family protein 250387 3242306 SERP0242 Staphylococcus epidermidis RP62A pyridine nucleotide-disulfide oxidoreductase family protein YP_187838.1 249056 R 176279 CDS YP_187839.1 57866192 3242307 complement(250392..250814) 1 NC_002976.3 identified by similarity to GP:14246363; hypothetical protein 250814 3242307 SERP0243 Staphylococcus epidermidis RP62A hypothetical protein YP_187839.1 250392 R 176279 CDS YP_187840.1 57866193 3242308 250971..251909 1 NC_002976.3 identified by match to protein family HMM PF00248; aldo/keto reductase 251909 3242308 SERP0244 Staphylococcus epidermidis RP62A aldo/keto reductase YP_187840.1 250971 D 176279 CDS YP_187841.1 57866201 3242463 252370..255051 1 NC_002976.3 identified by match to protein family HMM PF03176; transporter 255051 3242463 SERP0245 Staphylococcus epidermidis RP62A transporter YP_187841.1 252370 D 176279 CDS YP_187842.1 57866202 3242464 255075..256019 1 NC_002976.3 identified by match to protein family HMM PF04069; ABC transporter substrate-binding protein 256019 3242464 SERP0246 Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_187842.1 255075 D 176279 CDS YP_187843.1 57866203 3242465 256369..256938 1 NC_002976.3 transcriptional regulator 256938 3242465 SERP0247 Staphylococcus epidermidis RP62A transcriptional regulator YP_187843.1 256369 D 176279 CDS YP_187844.1 57866204 3242466 complement(256979..257083) 1 NC_002976.3 hypothetical protein 257083 3242466 SERP0248 Staphylococcus epidermidis RP62A hypothetical protein YP_187844.1 256979 R 176279 CDS YP_187845.1 57866205 3242467 257149..257823 1 NC_002976.3 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 257823 3242467 SERP0249 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_187845.1 257149 D 176279 CDS YP_187846.1 57866206 3242468 258272..258748 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 258748 3242468 SERP0250 Staphylococcus epidermidis RP62A acetyltransferase YP_187846.1 258272 D 176279 CDS YP_187847.1 57866207 3242469 258840..260138 1 NC_002976.3 identified by match to protein family HMM PF01966; HD domain-containing protein 260138 3242469 SERP0251 Staphylococcus epidermidis RP62A HD domain-containing protein YP_187847.1 258840 D 176279 CDS YP_187848.1 57866208 3243012 260186..260701 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0581; hypothetical protein 260701 3243012 SERP0252 Staphylococcus epidermidis RP62A hypothetical protein YP_187848.1 260186 D 176279 CDS YP_187849.1 57866209 3243013 complement(260788..261975) 1 NC_002976.3 identified by similarity to EGAD:165191; match to protein family HMM PF01969; hypothetical protein 261975 3243013 SERP0253 Staphylococcus epidermidis RP62A hypothetical protein YP_187849.1 260788 R 176279 CDS YP_187850.1 57866226 3241797 complement(261972..262748) 1 NC_002976.3 AIR carboxylase 262748 3241797 SERP0254 Staphylococcus epidermidis RP62A AIR carboxylase YP_187850.1 261972 R 176279 CDS YP_187851.1 57866227 3241798 complement(262763..263590) 1 NC_002976.3 identified by similarity to EGAD:49939; match to protein family HMM TIGR00268; hypothetical protein 263590 3241798 SERP0255 Staphylococcus epidermidis RP62A hypothetical protein YP_187851.1 262763 R 176279 CDS YP_187852.1 57866228 3241799 complement(263610..264884) 1 NC_002976.3 hypothetical protein 264884 3241799 SERP0256 Staphylococcus epidermidis RP62A hypothetical protein YP_187852.1 263610 R 176279 CDS YP_187853.1 57866229 3241800 265167..266189 1 NC_002976.3 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 266189 3241800 SERP0257 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_187853.1 265167 D 176279 CDS YP_187854.1 57866230 3241801 266272..266664 1 NC_002976.3 hypothetical protein 266664 3241801 SERP0258 Staphylococcus epidermidis RP62A hypothetical protein YP_187854.1 266272 D 176279 CDS YP_187855.1 57866231 3241286 266777..266887 1 NC_002976.3 hypothetical protein 266887 3241286 SERP0259 Staphylococcus epidermidis RP62A hypothetical protein YP_187855.1 266777 D 176279 CDS YP_187856.1 57866232 3241287 267446..268459 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 268459 3241287 SERP0260 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_187856.1 267446 D 176279 CDS YP_187857.1 57866241 3241296 268675..269130 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0583; hypothetical protein 269130 3241296 SERP0261 Staphylococcus epidermidis RP62A hypothetical protein YP_187857.1 268675 D 176279 CDS YP_187858.1 57866242 3241307 269127..270788 1 NC_002976.3 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 270788 argS 3241307 argS Staphylococcus epidermidis RP62A arginyl-tRNA synthetase YP_187858.1 269127 D 176279 CDS YP_187859.1 57866243 3241308 271030..271665 1 NC_002976.3 identified by match to protein family HMM PF00730; endonuclease III 271665 3241308 SERP0263 Staphylococcus epidermidis RP62A endonuclease III YP_187859.1 271030 D 176279 CDS YP_187860.1 57866244 3241309 271720..272472 1 NC_002976.3 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 272472 3241309 SERP0264 Staphylococcus epidermidis RP62A MerR family transcriptional regulator YP_187860.1 271720 D 176279 CDS YP_187861.1 57866245 3241310 272481..272732 1 NC_002976.3 hypothetical protein 272732 3241310 SERP0265 Staphylococcus epidermidis RP62A hypothetical protein YP_187861.1 272481 D 176279 CDS YP_187862.1 57866246 3241311 272919..273806 1 NC_002976.3 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 273806 3241311 SERP0266 Staphylococcus epidermidis RP62A iron ABC transporter substrate-binding protein YP_187862.1 272919 D 176279 CDS YP_187863.1 57866247 3241312 274083..275027 1 NC_002976.3 identified by match to protein family HMM PF01032; iron ABC transporter permease 275027 3241312 SERP0267 Staphylococcus epidermidis RP62A iron ABC transporter permease YP_187863.1 274083 D 176279 CDS YP_187864.1 57866248 3241313 275086..275814 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 275814 3241313 SERP0268 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_187864.1 275086 D 176279 CDS YP_187865.1 57866258 3241151 275792..276589 1 NC_002976.3 identified by match to protein family HMM PF00561; alpha/beta hydrolase 276589 3241151 SERP0269 Staphylococcus epidermidis RP62A alpha/beta hydrolase YP_187865.1 275792 D 176279 CDS YP_187866.1 57866259 3241152 276794..277303 1 NC_002976.3 identified by similarity to OMNI:SA0669; hypothetical protein 277303 3241152 SERP0270 Staphylococcus epidermidis RP62A hypothetical protein YP_187866.1 276794 D 176279 CDS YP_187867.1 57866260 3241153 277340..277462 1 NC_002976.3 hypothetical protein 277462 3241153 SERP0271 Staphylococcus epidermidis RP62A hypothetical protein YP_187867.1 277340 D 176279 CDS YP_187868.1 57866261 3241154 277548..278267 1 NC_002976.3 identified by similarity to OMNI:SA0670; hypothetical protein 278267 3241154 SERP0272 Staphylococcus epidermidis RP62A hypothetical protein YP_187868.1 277548 D 176279 CDS YP_187869.1 57866262 3241155 278475..279251 1 NC_002976.3 identified by match to protein family HMM PF00561; alpha/beta hydrolase 279251 3241155 SERP0273 Staphylococcus epidermidis RP62A alpha/beta hydrolase YP_187869.1 278475 D 176279 CDS YP_187870.1 57866263 3241156 complement(279424..279798) 1 NC_002976.3 identified by similarity to EGAD:42500; match to protein family HMM TIGR01889; accessory regulator A 279798 sarA 3241156 sarA Staphylococcus epidermidis RP62A accessory regulator A YP_187870.1 279424 R 176279 CDS YP_187871.1 57866264 3241157 complement(280211..281164) 1 NC_002976.3 identified by similarity to GP:2879913; hypothetical protein 281164 3241157 SERP0275 Staphylococcus epidermidis RP62A hypothetical protein YP_187871.1 280211 R 176279 CDS YP_187872.1 57866265 3241158 complement(281490..282383) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0594; match to protein family HMM PF04657; hypothetical protein 282383 3241158 SERP0276 Staphylococcus epidermidis RP62A hypothetical protein YP_187872.1 281490 R 176279 CDS YP_187873.1 57866274 3240662 282382..282486 1 NC_002976.3 hypothetical protein 282486 3240662 SERP0277 Staphylococcus epidermidis RP62A hypothetical protein YP_187873.1 282382 D 176279 CDS YP_187874.1 57866275 3240663 282518..282664 1 NC_002976.3 hypothetical protein 282664 3240663 SERP0278 Staphylococcus epidermidis RP62A hypothetical protein YP_187874.1 282518 D 176279 CDS YP_187875.1 57866276 3240664 complement(282773..282997) 1 NC_002976.3 identified by similarity to OMNI:SA0676; hypothetical protein 282997 3240664 SERP0279 Staphylococcus epidermidis RP62A hypothetical protein YP_187875.1 282773 R 176279 CDS YP_187876.1 57866277 3240565 complement(283013..283219) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0596; hypothetical protein 283219 3240565 SERP0280 Staphylococcus epidermidis RP62A hypothetical protein YP_187876.1 283013 R 176279 CDS YP_187877.1 57866278 3240566 283943..286345 1 NC_002976.3 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 286345 3240566 SERP0281 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit A YP_187877.1 283943 D 176279 CDS YP_187878.1 57866279 3240567 286332..286757 1 NC_002976.3 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 286757 3240567 SERP0282 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit B YP_187878.1 286332 D 176279 CDS YP_187879.1 57866280 3241843 286754..287098 1 NC_002976.3 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 287098 3241843 SERP0283 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit C YP_187879.1 286754 D 176279 CDS YP_187880.1 57866281 3241844 287091..288590 1 NC_002976.3 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 288590 3241844 SERP0284 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit D YP_187880.1 287091 D 176279 CDS YP_187881.1 57866290 3241332 288587..289069 1 NC_002976.3 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 289069 3241332 SERP0285 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit E YP_187881.1 288587 D 176279 CDS YP_187882.1 57866291 3241333 289066..289368 1 NC_002976.3 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F 289368 3241333 SERP0286 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit F YP_187882.1 289066 D 176279 CDS YP_187883.1 57866292 3241334 289343..289807 1 NC_002976.3 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 289807 3241334 SERP0287 Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit G YP_187883.1 289343 D 176279 CDS YP_187884.1 57866180 3241471 290114..290221 1 NC_002976.3 hypothetical protein 290221 3241471 SERP0288 Staphylococcus epidermidis RP62A hypothetical protein YP_187884.1 290114 D 176279 CDS YP_187885.1 57866181 3241472 290256..292295 1 NC_002976.3 identified by match to protein family HMM PF00999; Na+/H+ antiporter 292295 3241472 SERP0289 Staphylococcus epidermidis RP62A Na+/H+ antiporter YP_187885.1 290256 D 176279 CDS YP_187886.1 57866182 3241473 complement(293030..293959) 1 NC_002976.3 identified by similarity to GP:1617430; match to protein family HMM PF01297; ABC transporter substrate-binding protein 293959 sitC 3241473 sitC Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_187886.1 293030 R 176279 CDS YP_187887.1 57866183 3241474 complement(293956..294792) 1 NC_002976.3 identified by match to protein family HMM PF00950; ABC transporter permease 294792 sitB 3241474 sitB Staphylococcus epidermidis RP62A ABC transporter permease YP_187887.1 293956 R 176279 CDS YP_187888.1 57866184 3241475 complement(294793..295539) 1 NC_002976.3 identified by similarity to GP:1617428; match to protein family HMM PF00005; ABC transporter ATP-binding protein 295539 sitA 3241475 sitA Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187888.1 294793 R 176279 CDS YP_187889.1 57866185 3241476 295659..296303 1 NC_002976.3 identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent repressor 296303 sirR 3241476 sirR Staphylococcus epidermidis RP62A iron-dependent repressor YP_187889.1 295659 D 176279 CDS YP_187890.1 57866194 3242309 complement(296468..297214) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0611; hypothetical protein 297214 3242309 SERP0294 Staphylococcus epidermidis RP62A hypothetical protein YP_187890.1 296468 R 176279 CDS YP_187891.1 57866195 3242310 297389..298147 1 NC_002976.3 identified by similarity to EGAD:19699; match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosamine transferase 298147 tagA 3242310 tagA Staphylococcus epidermidis RP62A UDP-N-acetyl-D-mannosamine transferase YP_187891.1 297389 D 176279 CDS YP_187892.1 57866196 3242311 complement(298225..299019) 1 NC_002976.3 with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit 299019 3242311 SERP0296 Staphylococcus epidermidis RP62A teichoic acids export protein ATP-binding subunit YP_187892.1 298225 R 176279 CDS YP_187893.1 57866197 3242459 299351..300163 1 NC_002976.3 identified by similarity to EGAD:30975; match to protein family HMM PF01061; tagG protein, teichoic acid ABC transporter protein 300163 3242459 SERP0297 Staphylococcus epidermidis RP62A tagG protein, teichoic acid ABC transporter protein YP_187893.1 299351 D 176279 CDS YP_187894.1 57866198 3242460 300486..301577 1 NC_002976.3 identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein B 301577 3242460 SERP0298 Staphylococcus epidermidis RP62A teichoic acid biosynthesis protein B YP_187894.1 300486 D 176279 CDS YP_187895.1 57866199 3242461 301577..302641 1 NC_002976.3 identified by match to protein family HMM PF00535; teichoic acid biosynthesis protein X 302641 3242461 SERP0299 Staphylococcus epidermidis RP62A teichoic acid biosynthesis protein X YP_187895.1 301577 D 176279 CDS YP_187896.1 57866200 3242462 302776..303174 1 NC_002976.3 identified by similarity to EGAD:16695; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase 303174 tagD 3242462 tagD Staphylococcus epidermidis RP62A glycerol-3-phosphate cytidylyltransferase YP_187896.1 302776 D 176279 CDS YP_187897.1 57866210 3243014 303316..303426 1 NC_002976.3 hypothetical protein 303426 3243014 SERP0301 Staphylococcus epidermidis RP62A hypothetical protein YP_187897.1 303316 D 176279 CDS YP_187898.1 57866211 3243015 303515..303664 1 NC_002976.3 hypothetical protein 303664 3243015 SERP0302 Staphylococcus epidermidis RP62A hypothetical protein YP_187898.1 303515 D 176279 CDS YP_187899.1 57866212 3243016 304158..305885 1 NC_002976.3 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 305885 abcA 3243016 abcA Staphylococcus epidermidis RP62A ABC transporter permease/ATP-binding protein YP_187899.1 304158 D 176279 CDS YP_187900.1 57866213 3243017 306171..307400 1 NC_002976.3 identified by match to protein family HMM PF01773; nucleoside permease NupC 307400 3243017 SERP0304 Staphylococcus epidermidis RP62A nucleoside permease NupC YP_187900.1 306171 D 176279 CDS YP_187901.1 57866214 3243018 307937..308770 1 NC_002976.3 identified by similarity to OMNI:NTL01SPL1683; match to protein family HMM PF02588; hypothetical protein 308770 3243018 SERP0305 Staphylococcus epidermidis RP62A hypothetical protein YP_187901.1 307937 D 176279 CDS YP_187902.1 57866215 3243019 309129..309926 1 NC_002976.3 identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 309926 3243019 SERP0306 Staphylococcus epidermidis RP62A iron ABC transporter ATP-binding protein YP_187902.1 309129 D 176279 CDS YP_187903.1 57866216 3243020 310246..310746 1 NC_002976.3 identified by similarity to OMNI:SA0710; hypothetical protein 310746 3243020 SERP0307 Staphylococcus epidermidis RP62A hypothetical protein YP_187903.1 310246 D 176279 CDS YP_187904.1 57866217 3243021 310971..312038 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0630; hypothetical protein 312038 3243021 SERP0308 Staphylococcus epidermidis RP62A hypothetical protein YP_187904.1 310971 D 176279 CDS YP_187905.1 57866218 3240755 312317..313366 1 NC_002976.3 lipase/esterase 313366 3240755 SERP0309 Staphylococcus epidermidis RP62A lipase/esterase YP_187905.1 312317 D 176279 CDS YP_187906.1 57866219 3241790 complement(313927..314433) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 314433 3241790 SERP0310 Staphylococcus epidermidis RP62A acetyltransferase YP_187906.1 313927 R 176279 CDS YP_187907.1 57866220 3241791 314542..315465 1 NC_002976.3 identified by similarity to OMNI:SA0715; hypothetical protein 315465 3241791 SERP0311 Staphylococcus epidermidis RP62A hypothetical protein YP_187907.1 314542 D 176279 CDS YP_187908.1 57866221 3241792 315484..316158 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 316158 3241792 SERP0312 Staphylococcus epidermidis RP62A DNA-binding response regulator YP_187908.1 315484 D 176279 CDS YP_187909.1 57866222 3241793 316151..317191 1 NC_002976.3 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 317191 3241793 SERP0313 Staphylococcus epidermidis RP62A sensor histidine kinase YP_187909.1 316151 D 176279 CDS YP_187910.1 57866223 3241794 317337..318098 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 318098 3241794 SERP0314 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187910.1 317337 D 176279 CDS YP_187911.1 57866224 3241795 318088..319977 1 NC_002976.3 identified by match to protein family HMM PF02687; ABC transporter permease 319977 3241795 SERP0315 Staphylococcus epidermidis RP62A ABC transporter permease YP_187911.1 318088 D 176279 CDS YP_187912.1 57866225 3241796 320499..321116 1 NC_002976.3 identified by similarity to OMNI:SA0721; match to protein family HMM PF01865; hypothetical protein 321116 3241796 SERP0316 Staphylococcus epidermidis RP62A hypothetical protein YP_187912.1 320499 D 176279 CDS YP_187913.1 57866233 3241288 321131..322141 1 NC_002976.3 identified by match to protein family HMM PF01384; phosphate transporter family protein 322141 3241288 SERP0317 Staphylococcus epidermidis RP62A phosphate transporter family protein YP_187913.1 321131 D 176279 CDS YP_187914.1 57866234 3241289 complement(322334..323134) 1 NC_002976.3 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 323134 3241289 SERP0318 Staphylococcus epidermidis RP62A LysM domain-containing protein YP_187914.1 322334 R 176279 CDS YP_187915.1 57866235 3241290 323545..324204 1 NC_002976.3 identified by similarity to OMNI:SA0724; hypothetical protein 324204 3241290 SERP0319 Staphylococcus epidermidis RP62A hypothetical protein YP_187915.1 323545 D 176279 CDS YP_187916.1 57866236 3241291 324467..326641 1 NC_002976.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 326641 3241291 SERP0320 Staphylococcus epidermidis RP62A AraC family transcriptional regulator YP_187916.1 324467 D 176279 CDS YP_187917.1 57866237 3241292 326756..327115 1 NC_002976.3 identified by match to protein family HMM TIGR01889; accessory regulator A-like protein 327115 sarX 3241292 sarX Staphylococcus epidermidis RP62A accessory regulator A-like protein YP_187917.1 326756 D 176279 CDS YP_187918.1 57866238 3241293 327368..328084 1 NC_002976.3 identified by similarity to OMNI:SA0727; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 328084 3241293 SERP0322 Staphylococcus epidermidis RP62A hypothetical protein YP_187918.1 327368 D 176279 CDS YP_187919.1 57866239 3241294 328084..328560 1 NC_002976.3 identified by similarity to GP:13122144; hypothetical protein 328560 3241294 SERP0323 Staphylococcus epidermidis RP62A hypothetical protein YP_187919.1 328084 D 176279 CDS YP_187920.1 57866240 3241295 complement(328812..329486) 1 NC_002976.3 involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA 329486 scdA 3241295 scdA Staphylococcus epidermidis RP62A cell wall biosynthesis protein ScdA YP_187920.1 328812 R 176279 CDS YP_187921.1 57866249 3241314 329658..330803 1 NC_002976.3 identified by match to protein family HMM PF00042; match to protein family HMM PF00970; flavohemoprotein 330803 3241314 SERP0325 Staphylococcus epidermidis RP62A flavohemoprotein YP_187921.1 329658 D 176279 CDS YP_187922.1 57866250 3241315 330790..331008 1 NC_002976.3 hypothetical protein 331008 3241315 SERP0326 Staphylococcus epidermidis RP62A hypothetical protein YP_187922.1 330790 D 176279 CDS YP_187923.1 57866251 3241316 331297..331890 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0647; match to protein family HMM PF04167; hypothetical protein 331890 3241316 SERP0327 Staphylococcus epidermidis RP62A hypothetical protein YP_187923.1 331297 D 176279 CDS YP_187924.1 57866252 3241317 331971..332825 1 NC_002976.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 332825 3241317 SERP0328 Staphylococcus epidermidis RP62A LysR family transcriptional regulator YP_187924.1 331971 D 176279 CDS YP_187925.1 57866253 3241318 332883..334091 1 NC_002976.3 identified by similarity to EGAD:6822; similarity to EGAD:7093; similarity to EGAD:19549; sugar efflux transporter 334091 3241318 SERP0329 Staphylococcus epidermidis RP62A sugar efflux transporter YP_187925.1 332883 D 176279 CDS YP_187926.1 57866254 3241147 334098..334586 1 NC_002976.3 identified by similarity to OMNI:SA0734; match to protein family HMM PF04306; hypothetical protein 334586 3241147 SERP0330 Staphylococcus epidermidis RP62A hypothetical protein YP_187926.1 334098 D 176279 CDS YP_187927.1 57866255 3241148 complement(334642..335331) 1 NC_002976.3 identified by similarity to OMNI:SA0735; hypothetical protein 335331 3241148 SERP0331 Staphylococcus epidermidis RP62A hypothetical protein YP_187927.1 334642 R 176279 CDS YP_187928.1 57866256 3241149 335770..336192 1 NC_002976.3 lipoprotein 336192 3241149 SERP0332 Staphylococcus epidermidis RP62A lipoprotein YP_187928.1 335770 D 176279 CDS YP_187929.1 57866257 3241150 336324..336620 1 NC_002976.3 identified by similarity to OMNI:SA0738; hypothetical protein 336620 3241150 SERP0333 Staphylococcus epidermidis RP62A hypothetical protein YP_187929.1 336324 D 176279 CDS YP_187930.1 57866266 3240654 336746..337294 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 337294 3240654 SERP0334 Staphylococcus epidermidis RP62A acetyltransferase YP_187930.1 336746 D 176279 CDS YP_187931.1 57866267 3240655 complement(337593..338159) 1 NC_002976.3 identified by similarity to OMNI:SA0740; match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase 338159 3240655 SERP0335 Staphylococcus epidermidis RP62A decarboxylase YP_187931.1 337593 R 176279 CDS YP_187932.1 57866268 3240656 complement(338170..338619) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0657; match to protein family HMM PF02639; hypothetical protein 338619 3240656 SERP0336 Staphylococcus epidermidis RP62A hypothetical protein YP_187932.1 338170 R 176279 CDS YP_187933.1 57866269 3240657 complement(338622..339302) 1 NC_002976.3 identified by similarity to OMNI:SA0742; hypothetical protein 339302 3240657 SERP0337 Staphylococcus epidermidis RP62A hypothetical protein YP_187933.1 338622 R 176279 CDS YP_187934.1 57866270 3240658 339499..339963 1 NC_002976.3 identified by similarity to OMNI:NTL01BH0402; hypothetical protein 339963 3240658 SERP0338 Staphylococcus epidermidis RP62A hypothetical protein YP_187934.1 339499 D 176279 CDS YP_187935.1 57866271 3240659 complement(340246..341118) 1 NC_002976.3 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 341118 uppP 3240659 uppP Staphylococcus epidermidis RP62A UDP pyrophosphate phosphatase YP_187935.1 340246 R 176279 CDS YP_187936.1 57866272 3240660 341329..342963 1 NC_002976.3 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 342963 3240660 SERP0340 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187936.1 341329 D 176279 CDS YP_187937.1 57866273 3240661 342960..344654 1 NC_002976.3 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 344654 3240661 SERP0341 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187937.1 342960 D 176279 CDS YP_187938.1 57866282 3241845 complement(344895..345338) 1 NC_002976.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 345338 norR 3241845 norR Staphylococcus epidermidis RP62A MarR family transcriptional regulator YP_187938.1 344895 R 176279 CDS YP_187939.1 57866283 3241846 complement(345338..345439) 1 NC_002976.3 hypothetical protein 345439 3241846 SERP0343 Staphylococcus epidermidis RP62A hypothetical protein YP_187939.1 345338 R 176279 CDS YP_187940.1 57866284 3241847 345560..346486 1 NC_002976.3 identified by match to protein family HMM PF02492; cobalamin synthesis/P47K family protein 346486 3241847 SERP0344 Staphylococcus epidermidis RP62A cobalamin synthesis/P47K family protein YP_187940.1 345560 D 176279 CDS YP_187941.1 57866285 3241848 346508..346801 1 NC_002976.3 hypothetical protein 346801 3241848 SERP0345 Staphylococcus epidermidis RP62A hypothetical protein YP_187941.1 346508 D 176279 CDS YP_187942.1 57866286 3242931 346794..346940 1 NC_002976.3 hypothetical protein 346940 3242931 SERP0346 Staphylococcus epidermidis RP62A hypothetical protein YP_187942.1 346794 D 176279 CDS YP_187943.1 57866287 3242932 346930..347871 1 NC_002976.3 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 347871 mdh 3242932 mdh Staphylococcus epidermidis RP62A malate dehydrogenase YP_187943.1 346930 D 176279 CDS YP_187944.1 57866288 3242933 348005..349561 1 NC_002976.3 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 349561 3242933 SERP0348 Staphylococcus epidermidis RP62A anion transporter family protein YP_187944.1 348005 D 176279 CDS YP_187945.1 57866289 3241331 349758..351131 1 NC_002976.3 identified by match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 351131 3241331 SERP0349 Staphylococcus epidermidis RP62A deoxyribodipyrimidine photolyase YP_187945.1 349758 D 176279 CDS YP_187946.1 57866296 3241339 complement(351181..351450) 1 NC_002976.3 hypothetical protein 351450 3241339 SERP0350 Staphylococcus epidermidis RP62A hypothetical protein YP_187946.1 351181 R 176279 CDS YP_187947.1 57866297 3241340 complement(351447..352064) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0669; hypothetical protein 352064 3241340 SERP0351 Staphylococcus epidermidis RP62A hypothetical protein YP_187947.1 351447 R 176279 CDS YP_187948.1 57866298 3241341 352059..352244 1 NC_002976.3 hypothetical protein 352244 3241341 SERP0352 Staphylococcus epidermidis RP62A hypothetical protein YP_187948.1 352059 D 176279 CDS YP_187949.1 57866299 3240912 352474..353637 1 NC_002976.3 identified by similarity to EGAD:18536; match to protein family HMM PF00083; quinolone resistance protein NorA 353637 norA 3240912 norA Staphylococcus epidermidis RP62A quinolone resistance protein NorA YP_187949.1 352474 D 176279 CDS YP_187950.1 57866300 3240913 353959..354429 1 NC_002976.3 hypothetical protein 354429 3240913 SERP0354 Staphylococcus epidermidis RP62A hypothetical protein YP_187950.1 353959 D 176279 CDS YP_187951.1 57866301 3240914 354519..355025 1 NC_002976.3 identified by match to protein family HMM PF04073; ebsC protein 355025 3240914 SERP0355 Staphylococcus epidermidis RP62A ebsC protein YP_187951.1 354519 D 176279 CDS YP_187952.1 57866302 3240915 complement(355125..355223) 1 NC_002976.3 hypothetical protein 355223 3240915 SERP0356 Staphylococcus epidermidis RP62A hypothetical protein YP_187952.1 355125 R 176279 CDS YP_187953.1 57866303 3240916 355256..356014 1 NC_002976.3 identified by match to protein family HMM PF00455; DeoR family transcriptional regulator 356014 3240916 SERP0357 Staphylococcus epidermidis RP62A DeoR family transcriptional regulator YP_187953.1 355256 D 176279 CDS YP_187954.1 57866304 3240917 356011..356931 1 NC_002976.3 identified by similarity to EGAD:107874; match to protein family HMM PF00294; 1-phosphofructokinase 356931 fruK 3240917 fruK Staphylococcus epidermidis RP62A 1-phosphofructokinase YP_187954.1 356011 D 176279 CDS YP_187955.1 57866311 3241739 356937..358889 1 NC_002976.3 identified by similarity to GP:9501781; match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose-specific IIABC components 358889 fruA 3241739 fruA Staphylococcus epidermidis RP62A PTS system, fructose-specific IIABC components YP_187955.1 356937 D 176279 CDS YP_187956.1 57866312 3241740 359264..360436 1 NC_002976.3 identified by similarity to EGAD:107401; match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 360436 nagA 3241740 nagA Staphylococcus epidermidis RP62A N-acetylglucosamine-6-phosphate deacetylase YP_187956.1 359264 D 176279 CDS YP_187957.1 57866313 3241741 360673..362022 1 NC_002976.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS domain-containing protein 362022 3241741 SERP0361 Staphylococcus epidermidis RP62A CBS domain-containing protein YP_187957.1 360673 D 176279 CDS YP_187958.1 57866314 3241742 362236..363075 1 NC_002976.3 identified by match to protein family HMM PF00248; aldo/keto reductase 363075 3241742 SERP0362 Staphylococcus epidermidis RP62A aldo/keto reductase YP_187958.1 362236 D 176279 CDS YP_187959.1 57866315 3241743 363278..364384 1 NC_002976.3 identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 364384 3241743 SERP0363 Staphylococcus epidermidis RP62A glycosyl transferase, group 2 family protein YP_187959.1 363278 D 176279 CDS YP_187960.1 57866316 3241744 complement(364454..365419) 1 NC_002976.3 identified by similarity to GP:5726301; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase SaeS 365419 saeS 3241744 saeS Staphylococcus epidermidis RP62A sensor histidine kinase SaeS YP_187960.1 364454 R 176279 CDS YP_187961.1 57866317 3241745 complement(365509..366198) 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SaeR 366198 saeR 3241745 saeR Staphylococcus epidermidis RP62A DNA-binding response regulator SaeR YP_187961.1 365509 R 176279 CDS YP_187962.1 57866332 3241160 complement(366173..366646) 1 NC_002976.3 identified by similarity to OMNI:NTL01BH2256; hypothetical protein 366646 3241160 SERP0366 Staphylococcus epidermidis RP62A hypothetical protein YP_187962.1 366173 R 176279 CDS YP_187963.1 57866333 3241161 complement(366697..367134) 1 NC_002976.3 lipoprotein 367134 3241161 SERP0367 Staphylococcus epidermidis RP62A lipoprotein YP_187963.1 366697 R 176279 CDS YP_187964.1 57866334 3241162 367540..367638 1 NC_002976.3 hypothetical protein 367638 3241162 SERP0368 Staphylococcus epidermidis RP62A hypothetical protein YP_187964.1 367540 D 176279 CDS YP_187965.1 57866335 3241163 complement(367730..367885) 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 367885 3241163 SERP0369 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_187965.1 367730 R 176279 CDS YP_187966.1 57866336 3241164 complement(368235..368834) 1 NC_002976.3 hypothetical protein 368834 3241164 SERP0370 Staphylococcus epidermidis RP62A hypothetical protein YP_187966.1 368235 R 176279 CDS YP_187967.1 57866337 3241165 complement(368937..369575) 1 NC_002976.3 identified by similarity to GP:2808502; match to protein family HMM PF04055; exsD protein 369575 3241165 SERP0371 Staphylococcus epidermidis RP62A exsD protein YP_187967.1 368937 R 176279 CDS YP_187968.1 57866293 3241335 complement(369651..370070) 1 NC_002976.3 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 370070 3241335 SERP0372 Staphylococcus epidermidis RP62A 6-pyruvoyl tetrahydrobiopterin synthase YP_187968.1 369651 R 176279 CDS YP_187969.1 57866294 3241336 complement(370075..370746) 1 NC_002976.3 identified by match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 370746 3241336 SERP0373 Staphylococcus epidermidis RP62A exoenzyme S synthesis protein B YP_187969.1 370075 R 176279 CDS YP_187970.1 57866295 3241337 371043..371630 1 NC_002976.3 identified by similarity to EGAD:15630; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase, glutamine amidotransferase, component II 371630 pabA 3241337 pabA Staphylococcus epidermidis RP62A para-aminobenzoate synthase, glutamine amidotransferase, component II YP_187970.1 371043 D 176279 CDS YP_187971.1 57866305 3240918 373430..373636 1 NC_002976.3 hypothetical protein 373636 3240918 SERP0376 Staphylococcus epidermidis RP62A hypothetical protein YP_187971.1 373430 D 176279 CDS YP_187972.1 57866306 3240920 374374..375378 1 NC_002976.3 identified by match to protein family HMM PF02626; urea amidolyase 375378 3240920 SERP0378 Staphylococcus epidermidis RP62A urea amidolyase YP_187972.1 374374 D 176279 CDS YP_187973.1 57866307 3240921 375930..377870 1 NC_002976.3 identified by match to protein family HMM PF00884; sulfatase 377870 3240921 SERP0379 Staphylococcus epidermidis RP62A sulfatase YP_187973.1 375930 D 176279 CDS YP_187974.1 57866308 3240922 complement(378546..379559) 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 379559 3240922 SERP0380 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_187974.1 378546 R 176279 CDS YP_187975.1 57866309 3241737 complement(379917..380024) 1 NC_002976.3 hypothetical protein 380024 3241737 SERP0381 Staphylococcus epidermidis RP62A hypothetical protein YP_187975.1 379917 R 176279 CDS YP_187976.1 57866310 3241738 complement(380323..381138) 1 NC_002976.3 identified by match to protein family HMM PF02535; gufA protein 381138 3241738 SERP0382 Staphylococcus epidermidis RP62A gufA protein YP_187976.1 380323 R 176279 CDS YP_187977.1 57866318 3241746 381266..383149 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 383149 3241746 SERP0383 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187977.1 381266 D 176279 CDS YP_187978.1 57866319 3241747 383163..384941 1 NC_002976.3 identified by similarity to OMNI:NTL01LL1848; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 384941 recQ-1 3241747 recQ-1 Staphylococcus epidermidis RP62A ATP-dependent DNA helicase RecQ YP_187978.1 383163 D 176279 CDS YP_187979.1 57866320 3241319 385141..386115 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 386115 3241319 SERP0385 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_187979.1 385141 D 176279 CDS YP_187980.1 57866321 3241320 386108..387622 1 NC_002976.3 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; ABC transporter permease 387622 3241320 SERP0386 Staphylococcus epidermidis RP62A ABC transporter permease YP_187980.1 386108 D 176279 CDS YP_187981.1 57866322 3241321 387825..388880 1 NC_002976.3 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 388880 hisC 3241321 hisC Staphylococcus epidermidis RP62A histidinol-phosphate aminotransferase YP_187981.1 387825 D 176279 CDS YP_187982.1 57866323 3241322 389003..389542 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0701; hypothetical protein 389542 3241322 SERP0388 Staphylococcus epidermidis RP62A hypothetical protein YP_187982.1 389003 D 176279 CDS YP_187983.1 57866324 3241323 complement(389609..392218) 1 NC_002976.3 identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 392218 3241323 SERP0389 Staphylococcus epidermidis RP62A bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_187983.1 389609 R 176279 CDS YP_187984.1 57866325 3241324 complement(392617..393540) 1 NC_002976.3 identified by similarity to EGAD:20823; match to protein family HMM TIGR00147; bmrU protein 393540 bmrU 3241324 bmrU Staphylococcus epidermidis RP62A bmrU protein YP_187984.1 392617 R 176279 CDS YP_187985.1 57866326 3241326 complement(394195..395700) 1 NC_002976.3 identified by similarity to EGAD:9223; match to protein family HMM PF00854; match to protein family HMM TIGR00924; di-tripeptide transporter 395700 3241326 SERP0392 Staphylococcus epidermidis RP62A di-tripeptide transporter YP_187985.1 394195 R 176279 CDS YP_187986.1 57866327 3241327 complement(395687..395782) 1 NC_002976.3 hypothetical protein 395782 3241327 SERP0393 Staphylococcus epidermidis RP62A hypothetical protein YP_187986.1 395687 R 176279 CDS YP_187987.1 57866328 3241328 complement(395984..396484) 1 NC_002976.3 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 396484 3241328 SERP0394 Staphylococcus epidermidis RP62A 7-cyano-7-deazaguanine reductase YP_187987.1 395984 R 176279 CDS YP_187988.1 57866329 3241329 complement(396498..397373) 1 NC_002976.3 identified by match to protein family HMM PF00892; hypothetical protein 397373 3241329 SERP0395 Staphylococcus epidermidis RP62A hypothetical protein YP_187988.1 396498 R 176279 CDS YP_187989.1 57866330 3241330 398129..398527 1 NC_002976.3 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 398527 nrdI 3241330 nrdI Staphylococcus epidermidis RP62A ribonucleotide reductase stimulatory protein YP_187989.1 398129 D 176279 CDS YP_187990.1 57866331 3241159 398490..400595 1 NC_002976.3 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 400595 nrdE 3241159 nrdE Staphylococcus epidermidis RP62A ribonucleotide-diphosphate reductase subunit alpha YP_187990.1 398490 D 176279 CDS YP_187991.1 57866341 3241169 400714..401682 1 NC_002976.3 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 401682 nrdF 3241169 nrdF Staphylococcus epidermidis RP62A ribonucleotide-diphosphate reductase subunit beta YP_187991.1 400714 D 176279 CDS YP_187992.1 57866342 3241170 401654..401920 1 NC_002976.3 hypothetical protein 401920 3241170 SERP0399 Staphylococcus epidermidis RP62A hypothetical protein YP_187992.1 401654 D 176279 CDS YP_187993.1 57866343 3242513 401936..402910 1 NC_002976.3 identified by match to protein family HMM PF01032; iron ABC transporter permease 402910 3242513 SERP0400 Staphylococcus epidermidis RP62A iron ABC transporter permease YP_187993.1 401936 D 176279 CDS YP_187994.1 57866344 3242514 402900..403853 1 NC_002976.3 identified by similarity to EGAD:10563; match to protein family HMM PF01032; iron ABC transporter permease 403853 3242514 SERP0401 Staphylococcus epidermidis RP62A iron ABC transporter permease YP_187994.1 402900 D 176279 CDS YP_187995.1 57866345 3242515 403850..404629 1 NC_002976.3 identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 404629 3242515 SERP0402 Staphylococcus epidermidis RP62A iron ABC transporter ATP-binding protein YP_187995.1 403850 D 176279 CDS YP_187996.1 57866346 3242516 404708..405751 1 NC_002976.3 identified by match to protein family HMM PF01497; transferrin receptor 405751 3242516 SERP0403 Staphylococcus epidermidis RP62A transferrin receptor YP_187996.1 404708 D 176279 CDS YP_187997.1 57866347 3242517 complement(405902..406216) 1 NC_002976.3 identified by similarity to OMNI:SA0800; match to protein family HMM PF05495; hypothetical protein 406216 3242517 SERP0404 Staphylococcus epidermidis RP62A hypothetical protein YP_187997.1 405902 R 176279 CDS YP_187998.1 57866357 3242398 complement(406238..407158) 1 NC_002976.3 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 407158 murB 3242398 murB Staphylococcus epidermidis RP62A UDP-N-acetylenolpyruvoylglucosamine reductase YP_187998.1 406238 R 176279 CDS YP_187999.1 57866358 3242399 complement(407287..407814) 1 NC_002976.3 identified by similarity to OMNI:SA0802; match to protein family HMM PF04229; hypothetical protein 407814 3242399 SERP0406 Staphylococcus epidermidis RP62A hypothetical protein YP_187999.1 407287 R 176279 CDS YP_188000.1 57866359 3242400 407931..408821 1 NC_002976.3 lipoprotein 408821 3242400 SERP0407 Staphylococcus epidermidis RP62A lipoprotein YP_188000.1 407931 D 176279 CDS YP_188001.1 57866360 3242331 408970..409290 1 NC_002976.3 identified by similarity to OMNI:SA0804; hypothetical protein 409290 3242331 SERP0408 Staphylococcus epidermidis RP62A hypothetical protein YP_188001.1 408970 D 176279 CDS YP_188002.1 57866361 3242332 409561..410691 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0718; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 410691 3242332 SERP0409 Staphylococcus epidermidis RP62A glycerate kinase YP_188002.1 409561 D 176279 CDS YP_188003.1 57866362 3242333 complement(410782..412020) 1 NC_002976.3 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 412020 pepT 3242333 pepT Staphylococcus epidermidis RP62A peptidase T YP_188003.1 410782 R 176279 CDS YP_188004.1 57866363 3242334 complement(412041..412535) 1 NC_002976.3 identified by similarity to OMNI:SA0807; hypothetical protein 412535 3242334 SERP0411 Staphylococcus epidermidis RP62A hypothetical protein YP_188004.1 412041 R 176279 CDS YP_188005.1 57866364 3242335 complement(412551..413312) 1 NC_002976.3 hypothetical protein 413312 3242335 SERP0412 Staphylococcus epidermidis RP62A hypothetical protein YP_188005.1 412551 R 176279 CDS YP_188006.1 57866373 3242609 complement(413507..414583) 1 NC_002976.3 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; GGDEF domain-containing protein 414583 3242609 SERP0413 Staphylococcus epidermidis RP62A GGDEF domain-containing protein YP_188006.1 413507 R 176279 CDS YP_188007.1 57866374 3242610 414923..416002 1 NC_002976.3 Possible involvement in methicillin resistance; identified by similarity to EGAD:23076; match to protein family HMM PF00953; glycosyl transferase, group 4 family protein 416002 3242610 SERP0414 Staphylococcus epidermidis RP62A glycosyl transferase, group 4 family protein YP_188007.1 414923 D 176279 CDS YP_188008.1 57866375 3242611 complement(416063..416704) 1 NC_002976.3 identified by similarity to OMNI:SA0811; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 416704 3242611 SERP0415 Staphylococcus epidermidis RP62A hypothetical protein YP_188008.1 416063 R 176279 CDS YP_188009.1 57866376 3242612 416849..417715 1 NC_002976.3 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 417715 3242612 SERP0416 Staphylococcus epidermidis RP62A DegV family protein YP_188009.1 416849 D 176279 CDS YP_188010.1 57866377 3242613 417958..419121 1 NC_002976.3 identified by similarity to EGAD:24480; match to protein family HMM PF00271; competence protein ComF 419121 3242613 SERP0417 Staphylococcus epidermidis RP62A competence protein ComF YP_188010.1 417958 D 176279 CDS YP_188011.1 57866378 3242614 419114..419788 1 NC_002976.3 competence protein ComF 419788 3242614 SERP0418 Staphylococcus epidermidis RP62A competence protein ComF YP_188011.1 419114 D 176279 CDS YP_188012.1 57866379 3242615 419849..420418 1 NC_002976.3 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 420418 3242615 SERP0419 Staphylococcus epidermidis RP62A ribosomal subunit interface protein YP_188012.1 419849 D 176279 CDS YP_188013.1 57866380 3242616 421084..423618 1 NC_002976.3 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 423618 secA 3242616 secA Staphylococcus epidermidis RP62A preprotein translocase subunit SecA YP_188013.1 421084 D 176279 CDS YP_188014.1 57866389 3240768 join(423814..423885,423887..424930) 1 NC_002976.3 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; programmed frameshift; peptide chain release factor 2 424930 prfB 3240768 prfB Staphylococcus epidermidis RP62A peptide chain release factor 2 YP_188014.1 423814 D 176279 CDS YP_188015.1 57866390 3240769 425270..426070 1 NC_002976.3 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 426070 3240769 SERP0422 Staphylococcus epidermidis RP62A LysM domain-containing protein YP_188015.1 425270 D 176279 CDS YP_188016.1 57866391 3240770 426379..427020 1 NC_002976.3 HD domain-containing protein 427020 3240770 SERP0423 Staphylococcus epidermidis RP62A HD domain-containing protein YP_188016.1 426379 D 176279 CDS YP_188017.1 57866392 3240771 427026..427259 1 NC_002976.3 identified by similarity to EGAD:12337; hypothetical protein 427259 3240771 SERP0424 Staphylococcus epidermidis RP62A hypothetical protein YP_188017.1 427026 D 176279 CDS YP_188018.1 57866393 3240772 complement(427742..427834) 1 NC_002976.3 hypothetical protein 427834 3240772 SERP0425 Staphylococcus epidermidis RP62A hypothetical protein YP_188018.1 427742 R 176279 CDS YP_188019.1 57866394 3240773 427816..429801 1 NC_002976.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 429801 uvrB 3240773 uvrB Staphylococcus epidermidis RP62A excinuclease ABC subunit B YP_188019.1 427816 D 176279 CDS YP_188020.1 57866395 3240774 429809..432643 1 NC_002976.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 432643 uvrA 3240774 uvrA Staphylococcus epidermidis RP62A excinuclease ABC subunit A YP_188020.1 429809 D 176279 CDS YP_188021.1 57866396 3240775 432998..433930 1 NC_002976.3 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 433930 hprK 3240775 hprK Staphylococcus epidermidis RP62A HPr kinase/phosphorylase YP_188021.1 432998 D 176279 CDS YP_188022.1 57866405 3241078 433936..434775 1 NC_002976.3 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 434775 lgt 3241078 lgt Staphylococcus epidermidis RP62A prolipoprotein diacylglyceryl transferase YP_188022.1 433936 D 176279 CDS YP_188023.1 57866406 3241079 434781..435308 1 NC_002976.3 identified by match to protein family HMM PF00132; acetyltransferase 435308 3241079 SERP0430 Staphylococcus epidermidis RP62A acetyltransferase YP_188023.1 434781 D 176279 CDS YP_188024.1 57866407 3241080 435275..436714 1 NC_002976.3 identified by similarity to GP:5690062; match to protein family HMM PF00515; hypothetical protein 436714 yvcD 3241080 yvcD Staphylococcus epidermidis RP62A hypothetical protein YP_188024.1 435275 D 176279 CDS YP_188025.1 57866408 3241081 436779..437711 1 NC_002976.3 identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 437711 trxB 3241081 trxB Staphylococcus epidermidis RP62A thioredoxin-disulfide reductase YP_188025.1 436779 D 176279 CDS YP_188026.1 57866409 3241082 437908..438795 1 NC_002976.3 identified by similarity to OMNI:SA0830; match to protein family HMM PF03668; hypothetical protein 438795 3241082 SERP0433 Staphylococcus epidermidis RP62A hypothetical protein YP_188026.1 437908 D 176279 CDS YP_188027.1 57866410 3240548 438804..439790 1 NC_002976.3 identified by similarity to OMNI:SA0831; match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 439790 3240548 SERP0434 Staphylococcus epidermidis RP62A hypothetical protein YP_188027.1 438804 D 176279 CDS YP_188028.1 57866411 3240549 439919..440863 1 NC_002976.3 identified by similarity to OMNI:SA0832; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 440863 3240549 SERP0435 Staphylococcus epidermidis RP62A hypothetical protein YP_188028.1 439919 D 176279 CDS YP_188029.1 57866412 3240550 441191..441775 1 NC_002976.3 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 441775 clpP 3240550 clpP Staphylococcus epidermidis RP62A ATP-dependent Clp protease proteolytic subunit YP_188029.1 441191 D 176279 CDS YP_188030.1 57866422 3242267 complement(442037..442228) 1 NC_002976.3 hypothetical protein 442228 3242267 SERP0437 Staphylococcus epidermidis RP62A hypothetical protein YP_188030.1 442037 R 176279 CDS YP_188031.1 57866423 3242268 complement(442259..443158) 1 NC_002976.3 identified by match to protein family HMM TIGR01777; hypothetical protein 443158 3242268 SERP0438 Staphylococcus epidermidis RP62A hypothetical protein YP_188031.1 442259 R 176279 CDS YP_188032.1 57866424 3242269 444023..444643 1 NC_002976.3 hypothetical protein 444643 3242269 SERP0439 Staphylococcus epidermidis RP62A hypothetical protein YP_188032.1 444023 D 176279 CDS YP_188033.1 57866425 3242270 complement(444816..445052) 1 NC_002976.3 hypothetical protein 445052 3242270 SERP0440 Staphylococcus epidermidis RP62A hypothetical protein YP_188033.1 444816 R 176279 CDS YP_188034.1 57866426 3242271 445408..446421 1 NC_002976.3 identified by similarity to OMNI:SA0837; match to protein family HMM PF04198; gap transcriptional regulator 446421 gapR 3242271 gapR Staphylococcus epidermidis RP62A gap transcriptional regulator YP_188034.1 445408 D 176279 CDS YP_188035.1 57866427 3242272 446473..447483 1 NC_002976.3 identified by similarity to EGAD:22254; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 447483 gapA-1 3242272 gapA-1 Staphylococcus epidermidis RP62A glyceraldehyde 3-phosphate dehydrogenase YP_188035.1 446473 D 176279 CDS YP_188036.1 57866428 3242273 447677..448867 1 NC_002976.3 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 448867 pgk 3242273 pgk Staphylococcus epidermidis RP62A phosphoglycerate kinase YP_188036.1 447677 D 176279 CDS YP_188037.1 57866429 3242274 448998..449759 1 NC_002976.3 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 449759 tpiA 3242274 tpiA Staphylococcus epidermidis RP62A triosephosphate isomerase YP_188037.1 448998 D 176279 CDS YP_188038.1 57866439 3241754 449762..451279 1 NC_002976.3 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 451279 pgm 3241754 pgm Staphylococcus epidermidis RP62A phosphoglyceromutase YP_188038.1 449762 D 176279 CDS YP_188039.1 57866440 3241755 451418..452722 1 NC_002976.3 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 452722 eno 3241755 eno Staphylococcus epidermidis RP62A phosphopyruvate hydratase YP_188039.1 451418 D 176279 CDS YP_188040.1 57866441 3241756 452888..453346 1 NC_002976.3 hypothetical protein 453346 3241756 SERP0447 Staphylococcus epidermidis RP62A hypothetical protein YP_188040.1 452888 D 176279 CDS YP_188041.1 57866442 3241757 453415..453648 1 NC_002976.3 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 453648 secG 3241757 secG Staphylococcus epidermidis RP62A preprotein translocase subunit SecG YP_188041.1 453415 D 176279 CDS YP_188042.1 57866443 3241758 453949..454689 1 NC_002976.3 identified by similarity to EGAD:18058; carboxylesterase 454689 est 3241758 est Staphylococcus epidermidis RP62A carboxylesterase YP_188042.1 453949 D 176279 CDS YP_188043.1 57866444 3241759 454724..457102 1 NC_002976.3 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; VacB/RNase II family exoribonuclease 457102 3241759 SERP0450 Staphylococcus epidermidis RP62A VacB/RNase II family exoribonuclease YP_188043.1 454724 D 176279 CDS YP_188044.1 57866445 3241760 457127..457597 1 NC_002976.3 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 457597 smpB 3241760 smpB Staphylococcus epidermidis RP62A SsrA-binding protein YP_188044.1 457127 D 176279 CDS YP_188045.1 57866446 3241761 complement(458147..458377) 1 NC_002976.3 hypothetical protein 458377 3241761 SERP0452 Staphylococcus epidermidis RP62A hypothetical protein YP_188045.1 458147 R 176279 CDS YP_188046.1 57866455 3240636 458978..459166 1 NC_002976.3 hypothetical protein 459166 3240636 SERP0454 Staphylococcus epidermidis RP62A hypothetical protein YP_188046.1 458978 D 176279 CDS YP_188047.1 57866456 3240637 complement(459310..459852) 1 NC_002976.3 lipoprotein 459852 3240637 SERP0455 Staphylococcus epidermidis RP62A lipoprotein YP_188047.1 459310 R 176279 CDS YP_188048.1 57866338 3241166 460587..460757 1 NC_002976.3 hypothetical protein 460757 3241166 SERP0456 Staphylococcus epidermidis RP62A hypothetical protein YP_188048.1 460587 D 176279 CDS YP_188049.1 57866339 3241167 complement(461015..461248) 1 NC_002976.3 hypothetical protein 461248 3241167 SERP0457 Staphylococcus epidermidis RP62A hypothetical protein YP_188049.1 461015 R 176279 CDS YP_188050.1 57866340 3241168 complement(461861..463168) 1 NC_002976.3 identified by match to protein family HMM PF02386; sodium transport family protein 463168 3241168 SERP0458 Staphylococcus epidermidis RP62A sodium transport family protein YP_188050.1 461861 R 176279 CDS YP_188051.1 57866348 3242518 complement(463194..463289) 1 NC_002976.3 hypothetical protein 463289 3242518 SERP0459 Staphylococcus epidermidis RP62A hypothetical protein YP_188051.1 463194 R 176279 CDS YP_188052.1 57866349 3242519 463394..463738 1 NC_002976.3 identified by similarity to OMNI:NTL02ML4319; hypothetical protein 463738 3242519 SERP0460 Staphylococcus epidermidis RP62A hypothetical protein YP_188052.1 463394 D 176279 CDS YP_188053.1 57866350 3242520 complement(463958..464374) 1 NC_002976.3 glyoxalase 464374 3242520 SERP0461 Staphylococcus epidermidis RP62A glyoxalase YP_188053.1 463958 R 176279 CDS YP_188054.1 57866351 3242521 complement(465190..465366) 1 NC_002976.3 hypothetical protein 465366 3242521 SERP0462 Staphylococcus epidermidis RP62A hypothetical protein YP_188054.1 465190 R 176279 CDS YP_188055.1 57866352 3242522 complement(465874..466377) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0184; hypothetical protein 466377 3242522 SERP0463 Staphylococcus epidermidis RP62A hypothetical protein YP_188055.1 465874 R 176279 CDS YP_188056.1 57866353 3242523 466549..466674 1 NC_002976.3 hypothetical protein 466674 3242523 SERP0464 Staphylococcus epidermidis RP62A hypothetical protein YP_188056.1 466549 D 176279 CDS YP_188057.1 57866354 3242524 466664..467605 1 NC_002976.3 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 467605 3242524 SERP0465 Staphylococcus epidermidis RP62A cation efflux family protein YP_188057.1 466664 D 176279 CDS YP_188058.1 57866355 3242396 468971..469171 1 NC_002976.3 identified by match to protein family HMM PF00313; CSD family cold shock protein 469171 3242396 SERP0466 Staphylococcus epidermidis RP62A CSD family cold shock protein YP_188058.1 468971 D 176279 CDS YP_188059.1 57866356 3242397 complement(469792..470016) 1 NC_002976.3 identified by similarity to OMNI:SA0862; hypothetical protein 470016 3242397 SERP0467 Staphylococcus epidermidis RP62A hypothetical protein YP_188059.1 469792 R 176279 CDS YP_188060.1 57866365 3242336 complement(470040..470324) 1 NC_002976.3 identified by similarity to GP:14246587; hypothetical protein 470324 3242336 SERP0468 Staphylococcus epidermidis RP62A hypothetical protein YP_188060.1 470040 R 176279 CDS YP_188061.1 57866366 3242337 complement(470423..471169) 1 NC_002976.3 identified by similarity to EGAD:108826; hypothetical protein 471169 3242337 SERP0469 Staphylococcus epidermidis RP62A hypothetical protein YP_188061.1 470423 R 176279 CDS YP_188062.1 57866367 3242338 471450..471686 1 NC_002976.3 flagellar hook-length control protein-related protein 471686 3242338 SERP0470 Staphylococcus epidermidis RP62A flagellar hook-length control protein-related protein YP_188062.1 471450 D 176279 CDS YP_188063.1 57866368 3242339 complement(471746..472300) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0772; hypothetical protein 472300 3242339 SERP0471 Staphylococcus epidermidis RP62A hypothetical protein YP_188063.1 471746 R 176279 CDS YP_188064.1 57866369 3242340 complement(472490..472678) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0773; hypothetical protein 472678 3242340 SERP0472 Staphylococcus epidermidis RP62A hypothetical protein YP_188064.1 472490 R 176279 CDS YP_188065.1 57866370 3242341 473071..473208 1 NC_002976.3 hypothetical protein 473208 3242341 SERP0473 Staphylococcus epidermidis RP62A hypothetical protein YP_188065.1 473071 D 176279 CDS YP_188066.1 57866371 3242342 473369..473572 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0775; hypothetical protein 473572 3242342 SERP0474 Staphylococcus epidermidis RP62A hypothetical protein YP_188066.1 473369 D 176279 CDS YP_188067.1 57866372 3242343 complement(473564..473800) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0776; hypothetical protein 473800 3242343 SERP0475 Staphylococcus epidermidis RP62A hypothetical protein YP_188067.1 473564 R 176279 CDS YP_188068.1 57866381 3242617 474014..474601 1 NC_002976.3 identified by match to protein family HMM PF00300; phosphoglycerate mutase 474601 3242617 SERP0476 Staphylococcus epidermidis RP62A phosphoglycerate mutase YP_188068.1 474014 D 176279 CDS YP_188069.1 57866382 3242618 complement(474872..475372) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 475372 3242618 SERP0477 Staphylococcus epidermidis RP62A acetyltransferase YP_188069.1 474872 R 176279 CDS YP_188070.1 57866383 3242619 475958..476113 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 476113 3242619 SERP0478 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_188070.1 475958 D 176279 CDS YP_188071.1 57866384 3242620 476098..476253 1 NC_002976.3 identified by similarity to OMNI:SA0036; truncated IS1272 transposase 476253 3242620 SERP0479 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_188071.1 476098 D 176279 CDS YP_188072.1 57866385 3240764 complement(476297..476719) 1 NC_002976.3 identified by match to protein family HMM PF02566; OsmC/Ohr family protein 476719 3240764 SERP0480 Staphylococcus epidermidis RP62A OsmC/Ohr family protein YP_188072.1 476297 R 176279 CDS YP_188073.1 57866386 3240765 476880..477596 1 NC_002976.3 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 477596 aroD 3240765 aroD Staphylococcus epidermidis RP62A 3-dehydroquinate dehydratase YP_188073.1 476880 D 176279 CDS YP_188074.1 57866387 3240766 477677..478219 1 NC_002976.3 identified by match to protein family HMM PF00881; nitroreductase 478219 3240766 SERP0482 Staphylococcus epidermidis RP62A nitroreductase YP_188074.1 477677 D 176279 CDS YP_188075.1 57866388 3240767 complement(478402..478725) 1 NC_002976.3 identified by match to protein family HMM PF00085; thioredoxin 478725 3240767 SERP0483 Staphylococcus epidermidis RP62A thioredoxin YP_188075.1 478402 R 176279 CDS YP_188076.1 57866397 3241070 478868..479221 1 NC_002976.3 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 479221 3241070 SERP0484 Staphylococcus epidermidis RP62A hypothetical protein YP_188076.1 478868 D 176279 CDS YP_188077.1 57866398 3241071 479395..479775 1 NC_002976.3 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 479775 gcvH 3241071 gcvH Staphylococcus epidermidis RP62A glycine cleavage system protein H YP_188077.1 479395 D 176279 CDS YP_188078.1 57866399 3241072 479929..480021 1 NC_002976.3 hypothetical protein 480021 3241072 SERP0486 Staphylococcus epidermidis RP62A hypothetical protein YP_188078.1 479929 D 176279 CDS YP_188079.1 57866400 3241073 480035..480421 1 NC_002976.3 identified by match to protein family HMM PF01751; TOPRIM domain-containing protein 480421 3241073 SERP0487 Staphylococcus epidermidis RP62A TOPRIM domain-containing protein YP_188079.1 480035 D 176279 CDS YP_188080.1 57866401 3241074 480414..480710 1 NC_002976.3 thioredoxin 480710 3241074 SERP0488 Staphylococcus epidermidis RP62A thioredoxin YP_188080.1 480414 D 176279 CDS YP_188081.1 57866402 3241075 480963..481988 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 481988 3241075 SERP0489 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188081.1 480963 D 176279 CDS YP_188082.1 57866403 3241076 481981..482676 1 NC_002976.3 identified by match to protein family HMM PF00528; ABC transporter permease 482676 3241076 SERP0490 Staphylococcus epidermidis RP62A ABC transporter permease YP_188082.1 481981 D 176279 CDS YP_188083.1 57866404 3241077 482697..483509 1 NC_002976.3 identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 483509 3241077 SERP0491 Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_188083.1 482697 D 176279 CDS YP_188084.1 57866413 3240551 complement(483588..483686) 1 NC_002976.3 hypothetical protein 483686 3240551 SERP0492 Staphylococcus epidermidis RP62A hypothetical protein YP_188084.1 483588 R 176279 CDS YP_188085.1 57866414 3240552 complement(483779..483949) 1 NC_002976.3 hypothetical protein 483949 3240552 SERP0493 Staphylococcus epidermidis RP62A hypothetical protein YP_188085.1 483779 R 176279 CDS YP_188086.1 57866415 3240553 484112..484303 1 NC_002976.3 identified by similarity to OMNI:SA0912; match to protein family HMM PF05532; hypothetical protein 484303 3240553 SERP0494 Staphylococcus epidermidis RP62A hypothetical protein YP_188086.1 484112 D 176279 CDS YP_188087.1 57866416 3240554 complement(484369..485229) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0801; match to protein family HMM PF04018; hypothetical protein 485229 3240554 SERP0495 Staphylococcus epidermidis RP62A hypothetical protein YP_188087.1 484369 R 176279 CDS YP_188088.1 57866417 3240555 485551..486312 1 NC_002976.3 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 486312 sufC 3240555 sufC Staphylococcus epidermidis RP62A FeS assembly ATPase SufC YP_188088.1 485551 D 176279 CDS YP_188089.1 57866418 3240556 486407..487714 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0803; match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 487714 sufD 3240556 sufD Staphylococcus epidermidis RP62A FeS assembly protein SufD YP_188089.1 486407 D 176279 CDS YP_188090.1 57866419 3240557 487782..489023 1 NC_002976.3 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; cysteine desulfurase 489023 sufS 3240557 sufS Staphylococcus epidermidis RP62A cysteine desulfurase YP_188090.1 487782 D 176279 CDS YP_188091.1 57866420 3240558 489013..489477 1 NC_002976.3 identified by match to protein family HMM PF01592; NifU domain-containing protein 489477 3240558 SERP0499 Staphylococcus epidermidis RP62A NifU domain-containing protein YP_188091.1 489013 D 176279 CDS YP_188092.1 57866421 3240559 489683..491080 1 NC_002976.3 identified by similarity to OMNI:SA0918; match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 491080 sufB 3240559 sufB Staphylococcus epidermidis RP62A FeS assembly protein SufB YP_188092.1 489683 D 176279 CDS YP_188093.1 57866430 3242275 491410..491556 1 NC_002976.3 hypothetical protein 491556 3242275 SERP0501 Staphylococcus epidermidis RP62A hypothetical protein YP_188093.1 491410 D 176279 CDS YP_188094.1 57866431 3242276 491547..491771 1 NC_002976.3 hypothetical protein 491771 3242276 SERP0502 Staphylococcus epidermidis RP62A hypothetical protein YP_188094.1 491547 D 176279 CDS YP_188095.1 57866432 3242277 492239..492445 1 NC_002976.3 identified by similarity to OMNI:SA0285; hypothetical protein 492445 3242277 SERP0503 Staphylococcus epidermidis RP62A hypothetical protein YP_188095.1 492239 D 176279 CDS YP_188096.1 57866433 3242278 492542..492901 1 NC_002976.3 identified by similarity to OMNI:SA0299; hypothetical protein 492901 3242278 SERP0504 Staphylococcus epidermidis RP62A hypothetical protein YP_188096.1 492542 D 176279 CDS YP_188097.1 57866434 3242279 492915..493325 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0304; hypothetical protein 493325 3242279 SERP0505 Staphylococcus epidermidis RP62A hypothetical protein YP_188097.1 492915 D 176279 CDS YP_188098.1 57866435 3241750 complement(493340..493507) 1 NC_002976.3 hypothetical protein 493507 3241750 SERP0506 Staphylococcus epidermidis RP62A hypothetical protein YP_188098.1 493340 R 176279 CDS YP_188099.1 57866436 3241751 493871..494896 1 NC_002976.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; CBS domain-containing protein 494896 3241751 SERP0507 Staphylococcus epidermidis RP62A CBS domain-containing protein YP_188099.1 493871 D 176279 CDS YP_188100.1 57866437 3241752 495263..496111 1 NC_002976.3 identified by similarity to OMNI:SA0924; match to protein family HMM PF01904; hypothetical protein 496111 3241752 SERP0508 Staphylococcus epidermidis RP62A hypothetical protein YP_188100.1 495263 D 176279 CDS YP_188101.1 57866438 3241753 496124..496951 1 NC_002976.3 identified by similarity to OMNI:SA0925; match to protein family HMM PF01925; hypothetical protein 496951 3241753 SERP0509 Staphylococcus epidermidis RP62A hypothetical protein YP_188101.1 496124 D 176279 CDS YP_188102.1 57866447 3240627 497037..498356 1 NC_002976.3 identified by match to protein family HMM PF00149; match to protein family HMM PF01009; 5'-nucleotidase 498356 3240627 SERP0510 Staphylococcus epidermidis RP62A 5'-nucleotidase YP_188102.1 497037 D 176279 CDS YP_188103.1 57866448 3240628 498445..499359 1 NC_002976.3 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 499359 lipA 3240628 lipA Staphylococcus epidermidis RP62A lipoyl synthase YP_188103.1 498445 D 176279 CDS YP_188104.1 57866449 3240629 499546..499935 1 NC_002976.3 identified by similarity to GP:14246694; hypothetical protein 499935 3240629 SERP0512 Staphylococcus epidermidis RP62A hypothetical protein YP_188104.1 499546 D 176279 CDS YP_188105.1 57866450 3240630 complement(499995..500261) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0816; hypothetical protein 500261 3240630 SERP0513 Staphylococcus epidermidis RP62A hypothetical protein YP_188105.1 499995 R 176279 CDS YP_188106.1 57866451 3240631 500380..500814 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934; hypothetical protein 500814 3240631 SERP0514 Staphylococcus epidermidis RP62A hypothetical protein YP_188106.1 500380 D 176279 CDS YP_188107.1 57866452 3240632 500814..501593 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD superfamily hydrolase 501593 3240632 SERP0515 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188107.1 500814 D 176279 CDS YP_188108.1 57866453 3240633 501635..502606 1 NC_002976.3 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 502606 3240633 SERP0516 Staphylococcus epidermidis RP62A D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_188108.1 501635 D 176279 CDS YP_188109.1 57866454 3240634 503011..503157 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0820; hypothetical protein 503157 3240634 SERP0517 Staphylococcus epidermidis RP62A hypothetical protein YP_188109.1 503011 D 176279 CDS YP_188110.1 57866461 3242599 503173..504630 1 NC_002976.3 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 504630 dltA 3242599 dltA Staphylococcus epidermidis RP62A D-alanine--poly(phosphoribitol) ligase subunit 1 YP_188110.1 503173 D 176279 CDS YP_188111.1 57866462 3242600 504627..505841 1 NC_002976.3 identified by similarity to EGAD:22430; match to protein family HMM PF03062; dltB protein 505841 dltB 3242600 dltB Staphylococcus epidermidis RP62A dltB protein YP_188111.1 504627 D 176279 CDS YP_188112.1 57866463 3242601 505859..506095 1 NC_002976.3 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 506095 dltC 3242601 dltC Staphylococcus epidermidis RP62A D-alanine--poly(phosphoribitol) ligase subunit 2 YP_188112.1 505859 D 176279 CDS YP_188113.1 57866464 3242602 506092..507330 1 NC_002976.3 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; dltD protein 507330 dltD 3242602 dltD Staphylococcus epidermidis RP62A dltD protein YP_188113.1 506092 D 176279 CDS YP_188114.1 57866465 3242603 complement(507623..507865) 1 NC_002976.3 identified by match to protein family HMM PF01106; NifU domain-containing protein 507865 3242603 SERP0522 Staphylococcus epidermidis RP62A NifU domain-containing protein YP_188114.1 507623 R 176279 CDS YP_188115.1 57866466 3242604 507965..508285 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0826; hypothetical protein 508285 3242604 SERP0523 Staphylococcus epidermidis RP62A hypothetical protein YP_188115.1 507965 D 176279 CDS YP_188116.1 57866467 3242605 complement(508478..509542) 1 NC_002976.3 identified by similarity to SP:P00393; match to protein family HMM PF00070; NADH dehydrogenase 509542 3242605 SERP0524 Staphylococcus epidermidis RP62A NADH dehydrogenase YP_188116.1 508478 R 176279 CDS YP_188117.1 57866468 3242606 509829..510074 1 NC_002976.3 identified by similarity to OMNI:SA0942; hypothetical protein 510074 3242606 SERP0525 Staphylococcus epidermidis RP62A hypothetical protein YP_188117.1 509829 D 176279 CDS YP_188118.1 57866469 3242607 510104..510463 1 NC_002976.3 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB domain-containing protein 510463 3242607 SERP0526 Staphylococcus epidermidis RP62A HesB domain-containing protein YP_188118.1 510104 D 176279 CDS YP_188119.1 57866477 3240646 510733..511941 1 NC_002976.3 identified by match to protein family HMM PF00070; NADH dehydrogenase 511941 3240646 SERP0527 Staphylococcus epidermidis RP62A NADH dehydrogenase YP_188119.1 510733 D 176279 CDS YP_188120.1 57866478 3240647 512262..513743 1 NC_002976.3 identified by match to protein family HMM PF00883; cytosol aminopeptidase 513743 3240647 SERP0528 Staphylococcus epidermidis RP62A cytosol aminopeptidase YP_188120.1 512262 D 176279 CDS YP_188121.1 57866479 3240648 513929..515245 1 NC_002976.3 identified by match to protein family HMM PF03553; hypothetical protein 515245 3240648 SERP0529 Staphylococcus epidermidis RP62A hypothetical protein YP_188121.1 513929 D 176279 CDS YP_188122.1 57866480 3240649 515268..515642 1 NC_002976.3 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; ComA2 family protein 515642 3240649 SERP0530 Staphylococcus epidermidis RP62A ComA2 family protein YP_188122.1 515268 D 176279 CDS YP_188123.1 57866481 3240650 complement(515701..516855) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0834; hypothetical protein 516855 3240650 SERP0531 Staphylococcus epidermidis RP62A hypothetical protein YP_188123.1 515701 R 176279 CDS YP_188124.1 57866482 3240651 complement(517160..517516) 1 NC_002976.3 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 517516 mnhG 3240651 mnhG Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit G YP_188124.1 517160 R 176279 CDS YP_188125.1 57866483 3240652 complement(517494..517787) 1 NC_002976.3 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F 517787 mnhF 3240652 mnhF Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit F YP_188125.1 517494 R 176279 CDS YP_188126.1 57866484 3240653 complement(517787..518266) 1 NC_002976.3 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit E 518266 mnhE 3240653 mnhE Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit E YP_188126.1 517787 R 176279 CDS YP_188127.1 57866492 3242215 complement(518268..519764) 1 NC_002976.3 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 519764 mnhD 3242215 mnhD Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit D YP_188127.1 518268 R 176279 CDS YP_188128.1 57866493 3242216 complement(519751..520098) 1 NC_002976.3 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 520098 mnhC 3242216 mnhC Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit C YP_188128.1 519751 R 176279 CDS YP_188129.1 57866494 3242217 complement(520098..520526) 1 NC_002976.3 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit B 520526 mnhB 3242217 mnhB Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit B YP_188129.1 520098 R 176279 CDS YP_188130.1 57866495 3242218 complement(520519..522924) 1 NC_002976.3 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 522924 mnhA 3242218 mnhA Staphylococcus epidermidis RP62A monovalent cation/H+ antiporter subunit A YP_188130.1 520519 R 176279 CDS YP_188131.1 57866496 3242219 complement(523118..523498) 1 NC_002976.3 kinase-associated protein B 523498 kapB 3242219 kapB Staphylococcus epidermidis RP62A kinase-associated protein B YP_188131.1 523118 R 176279 CDS YP_188132.1 57866457 3240638 523564..524157 1 NC_002976.3 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase, cyclophilin-type 524157 3240638 SERP0540 Staphylococcus epidermidis RP62A peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_188132.1 523564 D 176279 CDS YP_188133.1 57866458 3240639 524454..524834 1 NC_002976.3 identified by similarity to SP:P80870; match to protein family HMM PF00575; general stress protein 13 524834 3240639 SERP0541 Staphylococcus epidermidis RP62A general stress protein 13 YP_188133.1 524454 D 176279 CDS YP_188134.1 57866459 3242596 525155..526282 1 NC_002976.3 identified by similarity to EGAD:45866; match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 526282 3242596 SERP0542 Staphylococcus epidermidis RP62A Oye family NADH-dependent flavin oxidoreductase YP_188134.1 525155 D 176279 CDS YP_188135.1 57866460 3242598 complement(527330..528343) 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 528343 3242598 SERP0544 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188135.1 527330 R 176279 CDS YP_188136.1 57866470 3242608 529033..530223 1 NC_002976.3 identified by similarity to EGAD:21835; match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase 530223 rocD 3242608 rocD Staphylococcus epidermidis RP62A ornithine--oxo-acid transaminase YP_188136.1 529033 D 176279 CDS YP_188137.1 57866471 3240640 530332..531576 1 NC_002976.3 identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase, NAD-specific 531576 gluD 3240640 gluD Staphylococcus epidermidis RP62A glutamate dehydrogenase, NAD-specific YP_188137.1 530332 D 176279 CDS YP_188138.1 57866472 3240641 complement(531768..532817) 1 NC_002976.3 identified by similarity to EGAD:9350; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase GlpQ 532817 3240641 SERP0547 Staphylococcus epidermidis RP62A glycerophosphoryl diester phosphodiesterase GlpQ YP_188138.1 531768 R 176279 CDS YP_188139.1 57866473 3240642 complement(532967..534358) 1 NC_002976.3 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 534358 argH 3240642 argH Staphylococcus epidermidis RP62A argininosuccinate lyase YP_188139.1 532967 R 176279 CDS YP_188140.1 57866474 3240643 complement(534348..535553) 1 NC_002976.3 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 535553 argG 3240643 argG Staphylococcus epidermidis RP62A argininosuccinate synthase YP_188140.1 534348 R 176279 CDS YP_188141.1 57866475 3240644 535900..537231 1 NC_002976.3 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 537231 pgi 3240644 pgi Staphylococcus epidermidis RP62A glucose-6-phosphate isomerase YP_188141.1 535900 D 176279 CDS YP_188142.1 57866476 3240645 537549..538124 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0852; hypothetical protein 538124 3240645 SERP0551 Staphylococcus epidermidis RP62A hypothetical protein YP_188142.1 537549 D 176279 CDS YP_188143.1 57866485 3242208 538128..538649 1 NC_002976.3 identified by similarity to SP:P72364; match to protein family HMM PF00461; signal peptidase IA, inactive 538649 spsA 3242208 spsA Staphylococcus epidermidis RP62A signal peptidase IA, inactive YP_188143.1 538128 D 176279 CDS YP_188144.1 57866486 3242209 538668..539243 1 NC_002976.3 identified by similarity to SP:P72365; match to protein family HMM PF00461; signal peptidase IB 539243 spsB 3242209 spsB Staphylococcus epidermidis RP62A signal peptidase IB YP_188144.1 538668 D 176279 CDS YP_188145.1 57866487 3242210 539364..542843 1 NC_002976.3 identified by similarity to EGAD:12281; exonuclease RexB 542843 rexB 3242210 rexB Staphylococcus epidermidis RP62A exonuclease RexB YP_188145.1 539364 D 176279 CDS YP_188146.1 57866488 3242211 542830..546486 1 NC_002976.3 identified by similarity to EGAD:18428; match to protein family HMM PF00580; exonuclease RexA 546486 rexA 3242211 rexA Staphylococcus epidermidis RP62A exonuclease RexA YP_188146.1 542830 D 176279 CDS YP_188147.1 57866489 3242212 546685..547590 1 NC_002976.3 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 547590 3242212 SERP0556 Staphylococcus epidermidis RP62A fumarylacetoacetate hydrolase YP_188147.1 546685 D 176279 CDS YP_188148.1 57866490 3242213 547948..548349 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0858; hypothetical protein 548349 3242213 SERP0557 Staphylococcus epidermidis RP62A hypothetical protein YP_188148.1 547948 D 176279 CDS YP_188149.1 57866491 3242214 548857..549870 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 549870 3242214 SERP0558 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188149.1 548857 D 176279 CDS YP_188150.1 57866500 3241477 550250..550405 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 550405 3241477 SERP0559 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_188150.1 550250 D 176279 CDS YP_188151.1 57866501 3241478 complement(550615..551931) 1 NC_002976.3 NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase 551931 3241478 SERP0560 Staphylococcus epidermidis RP62A coenzyme A disulfide reductase YP_188151.1 550615 R 176279 CDS YP_188152.1 57866502 3241479 complement(552009..552830) 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 552830 3241479 SERP0561 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188152.1 552009 R 176279 CDS YP_188153.1 57866503 3241480 552943..553251 1 NC_002976.3 identified by match to protein family HMM PF01883; hypothetical protein 553251 3241480 SERP0562 Staphylococcus epidermidis RP62A hypothetical protein YP_188153.1 552943 D 176279 CDS YP_188154.1 57866504 3241481 553646..555469 1 NC_002976.3 identified by match to protein family HMM PF01757; hypothetical protein 555469 3241481 SERP0563 Staphylococcus epidermidis RP62A hypothetical protein YP_188154.1 553646 D 176279 CDS YP_188155.1 57866505 3241482 555678..558287 1 NC_002976.3 identified by similarity to EGAD:20010; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 558287 clpB 3241482 clpB Staphylococcus epidermidis RP62A ATP-dependent Clp protease, ATP-binding subunit ClpB YP_188155.1 555678 D 176279 CDS YP_188156.1 57866506 3241483 558754..559767 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 559767 3241483 SERP0565 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188156.1 558754 D 176279 CDS YP_188157.1 57866514 3241491 complement(560026..560220) 1 NC_002976.3 identified by similarity to OMNI:SA0986; hypothetical protein 560220 3241491 SERP0566 Staphylococcus epidermidis RP62A hypothetical protein YP_188157.1 560026 R 176279 CDS YP_188158.1 57866515 3241492 560502..561443 1 NC_002976.3 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 561443 fabH 3241492 fabH Staphylococcus epidermidis RP62A 3-oxoacyl-ACP synthase YP_188158.1 560502 D 176279 CDS YP_188159.1 57866516 3241342 561455..562699 1 NC_002976.3 identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 562699 fabF 3241342 fabF Staphylococcus epidermidis RP62A 3-oxoacyl-ACP synthase YP_188159.1 561455 D 176279 CDS YP_188160.1 57866517 3241343 complement(562770..563141) 1 NC_002976.3 hypothetical protein 563141 3241343 SERP0569 Staphylococcus epidermidis RP62A hypothetical protein YP_188160.1 562770 R 176279 CDS YP_188161.1 57866518 3241344 563383..564309 1 NC_002976.3 identified by similarity to EGAD:8134; match to protein family HMM PF00528; oligopeptide ABC transporter permease 564309 oppB 3241344 oppB Staphylococcus epidermidis RP62A oligopeptide ABC transporter permease YP_188161.1 563383 D 176279 CDS YP_188162.1 57866519 3241345 564438..565379 1 NC_002976.3 identified by similarity to GP:10717145; match to protein family HMM PF00528; oligopeptide ABC transporter permease 565379 oppC 3241345 oppC Staphylococcus epidermidis RP62A oligopeptide ABC transporter permease YP_188162.1 564438 D 176279 CDS YP_188163.1 57866520 3241346 565394..566473 1 NC_002976.3 identified by similarity to EGAD:24096; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppD 566473 oppD 3241346 oppD Staphylococcus epidermidis RP62A oligopeptide ABC transporter ATP-binding protein OppD YP_188163.1 565394 D 176279 CDS YP_188164.1 57866529 3241355 566466..567404 1 NC_002976.3 identified by similarity to SP:P24137; match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein OppF 567404 oppF 3241355 oppF Staphylococcus epidermidis RP62A oligopeptide ABC transporter ATP-binding protein OppF YP_188164.1 566466 D 176279 CDS YP_188165.1 57866530 3241356 567431..569074 1 NC_002976.3 identified by similarity to GP:10717143; match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 569074 oppA 3241356 oppA Staphylococcus epidermidis RP62A oligopeptide ABC transporter oligopeptide-binding protein YP_188165.1 567431 D 176279 CDS YP_188166.1 57866531 3242745 complement(569129..570118) 1 NC_002976.3 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 570118 trpS 3242745 trpS Staphylococcus epidermidis RP62A tryptophanyl-tRNA synthetase YP_188166.1 569129 R 176279 CDS YP_188167.1 57866532 3242746 570409..570804 1 NC_002976.3 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; Spx family transcriptional regulator 570804 spxA 3242746 spxA Staphylococcus epidermidis RP62A Spx family transcriptional regulator YP_188167.1 570409 D 176279 CDS YP_188168.1 57866533 3242747 complement(571097..572110) 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 572110 3242747 SERP0577 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188168.1 571097 R 176279 CDS YP_188169.1 57866534 3242748 572719..573441 1 NC_002976.3 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 573441 3242748 SERP0578 Staphylococcus epidermidis RP62A adaptor protein YP_188169.1 572719 D 176279 CDS YP_188170.1 57866542 3242756 573537..574517 1 NC_002976.3 identified by similarity to OMNI:SA1004; competence protein 574517 3242756 SERP0579 Staphylococcus epidermidis RP62A competence protein YP_188170.1 573537 D 176279 CDS YP_188171.1 57866543 3242757 574567..576375 1 NC_002976.3 identified by similarity to EGAD:13184; match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 576375 pepF 3242757 pepF Staphylococcus epidermidis RP62A oligoendopeptidase F YP_188171.1 574567 D 176279 CDS YP_188172.1 57866544 3242758 complement(576839..577636) 1 NC_002976.3 identified by similarity to OMNI:SA1006; hypothetical protein 577636 3242758 SERP0581 Staphylococcus epidermidis RP62A hypothetical protein YP_188172.1 576839 R 176279 CDS YP_188173.1 57866545 3242759 complement(577659..578102) 1 NC_002976.3 identified by match to protein family HMM PF01152; hypothetical protein 578102 3242759 SERP0582 Staphylococcus epidermidis RP62A hypothetical protein YP_188173.1 577659 R 176279 CDS YP_188174.1 57866546 3240486 complement(578106..578696) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0892; match to protein family HMM PF01928; hypothetical protein 578696 3240486 SERP0583 Staphylococcus epidermidis RP62A hypothetical protein YP_188174.1 578106 R 176279 CDS YP_188175.1 57866547 3240487 complement(578711..578848) 1 NC_002976.3 hypothetical protein 578848 3240487 SERP0584 Staphylococcus epidermidis RP62A hypothetical protein YP_188175.1 578711 R 176279 CDS YP_188176.1 57866548 3240488 578981..579328 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0893; hypothetical protein 579328 3240488 SERP0585 Staphylococcus epidermidis RP62A hypothetical protein YP_188176.1 578981 D 176279 CDS YP_188177.1 57866549 3240489 579345..579980 1 NC_002976.3 identified by match to protein family HMM PF04607; GTP pyrophosphokinase 579980 relA-1 3240489 relA-1 Staphylococcus epidermidis RP62A GTP pyrophosphokinase YP_188177.1 579345 D 176279 CDS YP_188178.1 57866556 3240496 579994..580803 1 NC_002976.3 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 580803 ppnK 3240496 ppnK Staphylococcus epidermidis RP62A inorganic polyphosphate/ATP-NAD kinase YP_188178.1 579994 D 176279 CDS YP_188179.1 57866557 3240497 580800..581654 1 NC_002976.3 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 581654 3240497 SERP0588 Staphylococcus epidermidis RP62A ribosomal large subunit pseudouridine synthase D YP_188179.1 580800 D 176279 CDS YP_188180.1 57866558 3240498 581679..583064 1 NC_002976.3 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 583064 mgtE 3240498 mgtE Staphylococcus epidermidis RP62A magnesium transporter YP_188180.1 581679 D 176279 CDS YP_188181.1 57866559 3240499 583074..584918 1 NC_002976.3 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; Na+/H+ exchanger family protein 584918 3240499 SERP0590 Staphylococcus epidermidis RP62A Na+/H+ exchanger family protein YP_188181.1 583074 D 176279 CDS YP_188182.1 57866560 3240500 585628..586251 1 NC_002976.3 identified by similarity to GP:13700489; match to protein family HMM PF04276; hypothetical protein 586251 3240500 SERP0591 Staphylococcus epidermidis RP62A hypothetical protein YP_188182.1 585628 D 176279 CDS YP_188183.1 57866561 3240501 586312..586575 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2470; hypothetical protein 586575 3240501 SERP0592 Staphylococcus epidermidis RP62A hypothetical protein YP_188183.1 586312 D 176279 CDS YP_188184.1 57866562 3240502 complement(586848..587051) 1 NC_002976.3 identified by similarity to GP:14245835; transposase, truncation 587051 3240502 SERP0593 Staphylococcus epidermidis RP62A transposase, truncation YP_188184.1 586848 R 176279 CDS YP_188185.1 57866569 3240886 588630..590888 1 NC_002976.3 identified by similarity to EGAD:39654; match to protein family HMM PF00005; daunorubicin resistance protein DrrC 590888 3240886 SERP0595 Staphylococcus epidermidis RP62A daunorubicin resistance protein DrrC YP_188185.1 588630 D 176279 CDS YP_188186.1 57866570 3240887 590900..591028 1 NC_002976.3 hypothetical protein 591028 3240887 SERP0596 Staphylococcus epidermidis RP62A hypothetical protein YP_188186.1 590900 D 176279 CDS YP_188187.1 57866571 3240891 592507..592878 1 NC_002976.3 identified by similarity to EGAD:14951; IS200 family transposase 592878 3240891 SERP0600 Staphylococcus epidermidis RP62A IS200 family transposase YP_188187.1 592507 D 176279 CDS YP_188188.1 57866572 3240892 593100..593870 1 NC_002976.3 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 593870 fabI 3240892 fabI Staphylococcus epidermidis RP62A enoyl-ACP reductase YP_188188.1 593100 D 176279 CDS YP_188189.1 57866582 3241136 complement(594267..595352) 1 NC_002976.3 identified by match to protein family HMM PF01594; hypothetical protein 595352 3241136 SERP0602 Staphylococcus epidermidis RP62A hypothetical protein YP_188189.1 594267 R 176279 CDS YP_188190.1 57866583 3241137 595577..596332 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0902; match to protein family HMM PF00756; hypothetical protein 596332 3241137 SERP0603 Staphylococcus epidermidis RP62A hypothetical protein YP_188190.1 595577 D 176279 CDS YP_188191.1 57866584 3241138 596485..596994 1 NC_002976.3 similar to 2'-5' RNA ligase; hypothetical protein 596994 3241138 SERP0604 Staphylococcus epidermidis RP62A hypothetical protein YP_188191.1 596485 D 176279 CDS YP_188192.1 57866585 3241139 complement(597258..598451) 1 NC_002976.3 hypothetical protein 598451 3241139 SERP0605 Staphylococcus epidermidis RP62A hypothetical protein YP_188192.1 597258 R 176279 CDS YP_188193.1 57866586 3241140 complement(598429..599604) 1 NC_002976.3 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase 599604 ypfP 3241140 ypfP Staphylococcus epidermidis RP62A diacylglycerol glucosyltransferase YP_188193.1 598429 R 176279 CDS YP_188194.1 57866587 3241141 600125..601609 1 NC_002976.3 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 601609 murE 3241141 murE Staphylococcus epidermidis RP62A UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase YP_188194.1 600125 D 176279 CDS YP_188195.1 57866588 3241142 601599..601844 1 NC_002976.3 identified by similarity to OMNI:SA1024; hypothetical protein 601844 3241142 SERP0608 Staphylococcus epidermidis RP62A hypothetical protein YP_188195.1 601599 D 176279 CDS YP_188196.1 57866589 3241143 601848..603410 1 NC_002976.3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 603410 prfC 3241143 prfC Staphylococcus epidermidis RP62A peptide chain release factor 3 YP_188196.1 601848 D 176279 CDS YP_188197.1 57866597 3240845 603719..604525 1 NC_002976.3 identified by similarity to OMNI:SA1026; match to protein family HMM PF03741; TerC family integral membrane protein 604525 3240845 SERP0610 Staphylococcus epidermidis RP62A TerC family integral membrane protein YP_188197.1 603719 D 176279 CDS YP_188198.1 57866598 3240846 604736..606493 1 NC_002976.3 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 606493 3240846 SERP0611 Staphylococcus epidermidis RP62A serine protease YP_188198.1 604736 D 176279 CDS YP_188199.1 57866599 3240847 606511..607869 1 NC_002976.3 identified by match to protein family HMM PF02386; sodium transport family protein 607869 3240847 SERP0612 Staphylococcus epidermidis RP62A sodium transport family protein YP_188199.1 606511 D 176279 CDS YP_188200.1 57866600 3240389 608008..609513 1 NC_002976.3 identified by match to protein family HMM PF01009; match to protein family HMM PF02872; 5' nucleotidase 609513 3240389 SERP0613 Staphylococcus epidermidis RP62A 5' nucleotidase YP_188200.1 608008 D 176279 CDS YP_188201.1 57866601 3240390 complement(609616..610218) 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 610218 3240390 SERP0614 Staphylococcus epidermidis RP62A abortive infection family protein YP_188201.1 609616 R 176279 CDS YP_188202.1 57866602 3240391 complement(610224..610409) 1 NC_002976.3 identified by similarity to OMNI:SA1035; hypothetical protein 610409 3240391 SERP0615 Staphylococcus epidermidis RP62A hypothetical protein YP_188202.1 610224 R 176279 CDS YP_188203.1 57866603 3240392 610614..611600 1 NC_002976.3 identified by match to protein family HMM PF02539; match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 611600 3240392 SERP0616 Staphylococcus epidermidis RP62A lipoate-protein ligase A YP_188203.1 610614 D 176279 CDS YP_188204.1 57866604 3240393 complement(611678..611896) 1 NC_002976.3 identified by similarity to OMNI:SA1033; hypothetical protein 611896 3240393 SERP0617 Staphylococcus epidermidis RP62A hypothetical protein YP_188204.1 611678 R 176279 CDS YP_188205.1 57866610 3240399 612111..612686 1 NC_002976.3 ComK family protein 612686 3240399 SERP0618 Staphylococcus epidermidis RP62A ComK family protein YP_188205.1 612111 D 176279 CDS YP_188206.1 57866611 3241046 614935..615276 1 NC_002976.3 identified by similarity to GP:12620779; hypothetical protein 615276 3241046 SERP0620 Staphylococcus epidermidis RP62A hypothetical protein YP_188206.1 614935 D 176279 CDS YP_188207.1 57866612 3241048 complement(615966..616124) 1 NC_002976.3 hypothetical protein 616124 3241048 SERP0622 Staphylococcus epidermidis RP62A hypothetical protein YP_188207.1 615966 R 176279 CDS YP_188208.1 57866613 3241049 616295..616402 1 NC_002976.3 hypothetical protein 616402 3241049 SERP0623 Staphylococcus epidermidis RP62A hypothetical protein YP_188208.1 616295 D 176279 CDS YP_188209.1 57866614 3241050 complement(616775..616990) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0926; match to protein family HMM PF05154; hypothetical protein 616990 3241050 SERP0624 Staphylococcus epidermidis RP62A hypothetical protein YP_188209.1 616775 R 176279 CDS YP_188210.1 57866497 3242220 617006..617098 1 NC_002976.3 hypothetical protein 617098 3242220 SERP0625 Staphylococcus epidermidis RP62A hypothetical protein YP_188210.1 617006 D 176279 CDS YP_188211.1 57866498 3242221 617221..617778 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 617778 3242221 SERP0626 Staphylococcus epidermidis RP62A acetyltransferase YP_188211.1 617221 D 176279 CDS YP_188212.1 57866499 3242222 complement(618425..619363) 1 NC_002976.3 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 619363 menA 3242222 menA Staphylococcus epidermidis RP62A 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_188212.1 618425 R 176279 CDS YP_188213.1 57866507 3241484 619362..619457 1 NC_002976.3 hypothetical protein 619457 3241484 SERP0628 Staphylococcus epidermidis RP62A hypothetical protein YP_188213.1 619362 D 176279 CDS YP_188214.1 57866508 3241485 619533..620903 1 NC_002976.3 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase 620903 3241485 SERP0629 Staphylococcus epidermidis RP62A isochorismate synthase YP_188214.1 619533 D 176279 CDS YP_188215.1 57866509 3241486 620890..622563 1 NC_002976.3 identified by similarity to EGAD:19018; match to protein family HMM PF02776; match to protein family HMM TIGR00173; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 622563 menD 3241486 menD Staphylococcus epidermidis RP62A 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_188215.1 620890 D 176279 CDS YP_188216.1 57866510 3241487 622550..623353 1 NC_002976.3 identified by match to protein family HMM PF00561; alpha/beta hydrolase 623353 3241487 SERP0631 Staphylococcus epidermidis RP62A alpha/beta hydrolase YP_188216.1 622550 D 176279 CDS YP_188217.1 57866511 3241488 623346..624164 1 NC_002976.3 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 624164 menB 3241488 menB Staphylococcus epidermidis RP62A naphthoate synthase YP_188217.1 623346 D 176279 CDS YP_188218.1 57866512 3241489 complement(624509..625693) 1 NC_002976.3 identified by match to protein family HMM PF00155; aminotransferase, class I 625693 3241489 SERP0633 Staphylococcus epidermidis RP62A aminotransferase, class I YP_188218.1 624509 R 176279 CDS YP_188219.1 57866513 3241490 complement(625836..626843) 1 NC_002976.3 identified by similarity to OMNI:SA1059; match to protein family HMM PF01757; hypothetical protein 626843 3241490 SERP0634 Staphylococcus epidermidis RP62A hypothetical protein YP_188219.1 625836 R 176279 CDS YP_188220.1 57866521 3241347 626997..627416 1 NC_002976.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 627416 3241347 SERP0635 Staphylococcus epidermidis RP62A MarR family transcriptional regulator YP_188220.1 626997 D 176279 CDS YP_188221.1 57866522 3241348 complement(627656..631663) 1 NC_002976.3 identified by similarity to EGAD:42602; match to protein family HMM PF01510; match to protein family HMM PF01832; bifunctional autolysin 631663 atlE 3241348 atlE Staphylococcus epidermidis RP62A bifunctional autolysin YP_188221.1 627656 R 176279 CDS YP_188222.1 57866523 3241349 complement(631904..632326) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 632326 3241349 SERP0637 Staphylococcus epidermidis RP62A acetyltransferase YP_188222.1 631904 R 176279 CDS YP_188223.1 57866524 3241350 complement(632421..632552) 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 632552 3241350 SERP0638 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_188223.1 632421 R 176279 CDS YP_188224.1 57866525 3241351 complement(632900..633370) 1 NC_002976.3 identified by similarity to EGAD:36365; hypothetical protein 633370 3241351 SERP0639 Staphylococcus epidermidis RP62A hypothetical protein YP_188224.1 632900 R 176279 CDS YP_188225.1 57866526 3241352 complement(633418..634656) 1 NC_002976.3 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 634656 3241352 SERP0640 Staphylococcus epidermidis RP62A transcriptional regulator YP_188225.1 633418 R 176279 CDS YP_188226.1 57866527 3241353 635463..636665 1 NC_002976.3 identified by match to protein family HMM PF00144; fmt protein 636665 3241353 SERP0641 Staphylococcus epidermidis RP62A fmt protein YP_188226.1 635463 D 176279 CDS YP_188227.1 57866528 3241354 complement(636822..637730) 1 NC_002976.3 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 637730 3241354 SERP0642 Staphylococcus epidermidis RP62A ribonucleoside hydrolase RihC YP_188227.1 636822 R 176279 CDS YP_188228.1 57866535 3242749 complement(637917..638207) 1 NC_002976.3 identified by similarity to SP:P34959; match to protein family HMM PF03626; quinol oxidase, subunit IV 638207 qoxD 3242749 qoxD Staphylococcus epidermidis RP62A quinol oxidase, subunit IV YP_188228.1 637917 R 176279 CDS YP_188229.1 57866536 3242750 complement(638204..638809) 1 NC_002976.3 identified by similarity to EGAD:6311; match to protein family HMM PF00510; quinol oxidase, subunit III 638809 qoxC 3242750 qoxC Staphylococcus epidermidis RP62A quinol oxidase, subunit III YP_188229.1 638204 R 176279 CDS YP_188230.1 57866537 3242751 complement(638799..640787) 1 NC_002976.3 identified by similarity to EGAD:7190; match to protein family HMM PF00115; quinol oxidase, subunit I 640787 qoxA 3242751 qoxA Staphylococcus epidermidis RP62A quinol oxidase, subunit I YP_188230.1 638799 R 176279 CDS YP_188231.1 57866538 3242752 complement(640787..641911) 1 NC_002976.3 identified by similarity to SP:P34957; match to protein family HMM PF02790; match to protein family HMM TIGR01432; quinol oxidase, subunit II 641911 qoxB 3242752 qoxB Staphylococcus epidermidis RP62A quinol oxidase, subunit II YP_188231.1 640787 R 176279 CDS YP_188232.1 57866539 3242753 complement(642450..642767) 1 NC_002976.3 chitinase-related protein 642767 3242753 SERP0647 Staphylococcus epidermidis RP62A chitinase-related protein YP_188232.1 642450 R 176279 CDS YP_188233.1 57866540 3242754 complement(643140..644000) 1 NC_002976.3 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 644000 folD 3242754 folD Staphylococcus epidermidis RP62A bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_188233.1 643140 R 176279 CDS YP_188234.1 57866541 3242755 644205..644687 1 NC_002976.3 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 644687 purE 3242755 purE Staphylococcus epidermidis RP62A phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_188234.1 644205 D 176279 CDS YP_188235.1 57866550 3240490 644674..645801 1 NC_002976.3 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 645801 purK 3240490 purK Staphylococcus epidermidis RP62A phosphoribosylaminoimidazole carboxylase ATPase subunit YP_188235.1 644674 D 176279 CDS YP_188236.1 57866551 3240491 645802..646506 1 NC_002976.3 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 646506 purC 3240491 purC Staphylococcus epidermidis RP62A phosphoribosylaminoimidazole-succinocarboxamide synthase YP_188236.1 645802 D 176279 CDS YP_188237.1 57866552 3240492 646506..646766 1 NC_002976.3 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 646766 purS 3240492 purS Staphylococcus epidermidis RP62A phosphoribosylformylglycinamidine synthase, PurS protein YP_188237.1 646506 D 176279 CDS YP_188238.1 57866553 3240493 646768..647439 1 NC_002976.3 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 647439 purQ 3240493 purQ Staphylococcus epidermidis RP62A phosphoribosylformylglycinamidine synthase I YP_188238.1 646768 D 176279 CDS YP_188239.1 57866554 3240494 647432..649621 1 NC_002976.3 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 649621 purL 3240494 purL Staphylococcus epidermidis RP62A phosphoribosylformylglycinamidine synthase II YP_188239.1 647432 D 176279 CDS YP_188240.1 57866555 3240495 649600..651084 1 NC_002976.3 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 651084 purF 3240495 purF Staphylococcus epidermidis RP62A amidophosphoribosyltransferase YP_188240.1 649600 D 176279 CDS YP_188241.1 57866563 3240880 651077..652108 1 NC_002976.3 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 652108 purM 3240880 purM Staphylococcus epidermidis RP62A phosphoribosylaminoimidazole synthetase YP_188241.1 651077 D 176279 CDS YP_188242.1 57866564 3240881 652108..652674 1 NC_002976.3 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 652674 purN 3240881 purN Staphylococcus epidermidis RP62A phosphoribosylglycinamide formyltransferase YP_188242.1 652108 D 176279 CDS YP_188243.1 57866565 3240882 652691..654169 1 NC_002976.3 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 654169 purH 3240882 purH Staphylococcus epidermidis RP62A bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_188243.1 652691 D 176279 CDS YP_188244.1 57866566 3240883 654195..655436 1 NC_002976.3 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 655436 purD 3240883 purD Staphylococcus epidermidis RP62A phosphoribosylamine--glycine ligase YP_188244.1 654195 D 176279 CDS YP_188245.1 57866567 3240884 complement(655569..656408) 1 NC_002976.3 identified by match to protein family HMM PF02361; cobalt transport family protein 656408 3240884 SERP0660 Staphylococcus epidermidis RP62A cobalt transport family protein YP_188245.1 655569 R 176279 CDS YP_188246.1 57866568 3240885 complement(656368..657771) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 657771 3240885 SERP0661 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188246.1 656368 R 176279 CDS YP_188247.1 57866573 3240893 complement(657785..658360) 1 NC_002976.3 identified by similarity to OMNI:SA1086; hypothetical protein 658360 3240893 SERP0662 Staphylococcus epidermidis RP62A hypothetical protein YP_188247.1 657785 R 176279 CDS YP_188248.1 57866574 3241128 658883..660658 1 NC_002976.3 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 660658 3241128 SERP0663 Staphylococcus epidermidis RP62A hypothetical protein YP_188248.1 658883 D 176279 CDS YP_188249.1 57866575 3241129 660702..660794 1 NC_002976.3 hypothetical protein 660794 3241129 SERP0664 Staphylococcus epidermidis RP62A hypothetical protein YP_188249.1 660702 D 176279 CDS YP_188250.1 57866576 3241130 complement(661070..661204) 1 NC_002976.3 hypothetical protein 661204 3241130 SERP0665 Staphylococcus epidermidis RP62A hypothetical protein YP_188250.1 661070 R 176279 CDS YP_188251.1 57866577 3241131 661356..662648 1 NC_002976.3 identified by similarity to OMNI:SA1088; hypothetical protein 662648 3241131 SERP0666 Staphylococcus epidermidis RP62A hypothetical protein YP_188251.1 661356 D 176279 CDS YP_188252.1 57866578 3241132 662954..664126 1 NC_002976.3 identified by similarity to OMNI:SA1089; hypothetical protein 664126 3241132 SERP0667 Staphylococcus epidermidis RP62A hypothetical protein YP_188252.1 662954 D 176279 CDS YP_188253.1 57866579 3241133 664186..664725 1 NC_002976.3 identified by similarity to OMNI:SA1090; hypothetical protein 664725 3241133 SERP0668 Staphylococcus epidermidis RP62A hypothetical protein YP_188253.1 664186 D 176279 CDS YP_188254.1 57866580 3241134 664881..665147 1 NC_002976.3 identified by similarity to EGAD:6430; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 665147 ptsH 3241134 ptsH Staphylococcus epidermidis RP62A phosphocarrier protein HPr YP_188254.1 664881 D 176279 CDS YP_188255.1 57866581 3241135 665150..666868 1 NC_002976.3 identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 666868 ptsI 3241135 ptsI Staphylococcus epidermidis RP62A phosphoenolpyruvate-protein phosphotransferase YP_188255.1 665150 D 176279 CDS YP_188256.1 57866590 3241144 complement(667143..667379) 1 NC_002976.3 identified by similarity to OMNI:SA1093; hypothetical protein 667379 3241144 SERP0671 Staphylococcus epidermidis RP62A hypothetical protein YP_188256.1 667143 R 176279 CDS YP_188257.1 57866591 3241145 667579..668934 1 NC_002976.3 identified by similarity to EGAD:98907; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 668934 cydA 3241145 cydA Staphylococcus epidermidis RP62A cytochrome d ubiquinol oxidase, subunit I YP_188257.1 667579 D 176279 CDS YP_188258.1 57866592 3241146 668931..669947 1 NC_002976.3 identified by similarity to GP:4514629; cytochrome d ubiquinol oxidase, subunit II 669947 cydB 3241146 cydB Staphylococcus epidermidis RP62A cytochrome d ubiquinol oxidase, subunit II YP_188258.1 668931 D 176279 CDS YP_188259.1 57866593 3240840 670003..670662 1 NC_002976.3 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein TrkA 670662 3240840 SERP0674 Staphylococcus epidermidis RP62A potassium uptake protein TrkA YP_188259.1 670003 D 176279 CDS YP_188260.1 57866594 3240842 complement(671644..673326) 1 NC_002976.3 identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649; metallo-beta-lactamase 673326 3240842 SERP0676 Staphylococcus epidermidis RP62A metallo-beta-lactamase YP_188260.1 671644 R 176279 CDS YP_188261.1 57866595 3240843 complement(673326..673544) 1 NC_002976.3 identified by similarity to OMNI:SA1099; hypothetical protein 673544 3240843 SERP0677 Staphylococcus epidermidis RP62A hypothetical protein YP_188261.1 673326 R 176279 CDS YP_188262.1 57866596 3240844 complement(673977..674528) 1 NC_002976.3 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 674528 def 3240844 def Staphylococcus epidermidis RP62A peptide deformylase YP_188262.1 673977 R 176279 CDS YP_188263.1 57866605 3240394 674711..675337 1 NC_002976.3 identified by similarity to OMNI:SA1101; hypothetical protein 675337 3240394 SERP0679 Staphylococcus epidermidis RP62A hypothetical protein YP_188263.1 674711 D 176279 CDS YP_188264.1 57866606 3240395 675508..676620 1 NC_002976.3 identified by similarity to SP:P21881; match to protein family HMM PF00676; pyruvate dehydrogenase complex E1 component, alpha subunit 676620 pdhA 3240395 pdhA Staphylococcus epidermidis RP62A pyruvate dehydrogenase complex E1 component, alpha subunit YP_188264.1 675508 D 176279 CDS YP_188265.1 57866607 3240396 676624..677601 1 NC_002976.3 identified by similarity to SP:P21882; match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase complex E1 component, beta subunit 677601 pdhB 3240396 pdhB Staphylococcus epidermidis RP62A pyruvate dehydrogenase complex E1 component, beta subunit YP_188265.1 676624 D 176279 CDS YP_188266.1 57866608 3240397 677732..679033 1 NC_002976.3 identified by similarity to EGAD:102440; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 679033 pdhC 3240397 pdhC Staphylococcus epidermidis RP62A branched-chain alpha-keto acid dehydrogenase subunit E2 YP_188266.1 677732 D 176279 CDS YP_188267.1 57866609 3240398 679038..680444 1 NC_002976.3 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 680444 pdhD 3240398 pdhD Staphylococcus epidermidis RP62A dihydrolipoamide dehydrogenase YP_188267.1 679038 D 176279 CDS YP_188268.1 57866617 3241053 680746..681024 1 NC_002976.3 identified by similarity to OMNI:SA1106; match to protein family HMM PF05256; hypothetical protein 681024 3241053 SERP0684 Staphylococcus epidermidis RP62A hypothetical protein YP_188268.1 680746 D 176279 CDS YP_188269.1 57866618 3241054 681163..681702 1 NC_002976.3 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 681702 3241054 SERP0685 Staphylococcus epidermidis RP62A Cro/CI family transcriptional regulator YP_188269.1 681163 D 176279 CDS YP_188270.1 57866619 3241055 681714..682808 1 NC_002976.3 identified by similarity to EGAD:15160; match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 682808 potA 3241055 potA Staphylococcus epidermidis RP62A spermidine/putrescine ABC transporter ATP-binding protein YP_188270.1 681714 D 176279 CDS YP_188271.1 57866620 3241056 682801..683604 1 NC_002976.3 identified by similarity to EGAD:24120; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 683604 potB 3241056 potB Staphylococcus epidermidis RP62A spermidine/putrescine ABC transporter permease PotB YP_188271.1 682801 D 176279 CDS YP_188272.1 57866621 3241057 683610..684422 1 NC_002976.3 identified by similarity to EGAD:15490; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC 684422 potC 3241057 potC Staphylococcus epidermidis RP62A spermidine/putrescine ABC transporter permease PotC YP_188272.1 683610 D 176279 CDS YP_188273.1 57866622 3241058 684419..685492 1 NC_002976.3 identified by similarity to EGAD:16715; match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 685492 potD 3241058 potD Staphylococcus epidermidis RP62A spermidine/putrescine ABC transporter spermidine/putrescine-binding protein YP_188273.1 684419 D 176279 CDS YP_188274.1 57866631 3241067 685561..686712 1 NC_002976.3 identified by similarity to OMNI:SA1112; hypothetical protein 686712 3241067 SERP0690 Staphylococcus epidermidis RP62A hypothetical protein YP_188274.1 685561 D 176279 CDS YP_188275.1 57866632 3241068 687017..687553 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0989; hypothetical protein 687553 3241068 SERP0691 Staphylococcus epidermidis RP62A hypothetical protein YP_188275.1 687017 D 176279 CDS YP_188276.1 57866633 3241069 complement(687766..689127) 1 NC_002976.3 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH 689127 3241069 SERP0692 Staphylococcus epidermidis RP62A manganese transport protein MntH YP_188276.1 687766 R 176279 CDS YP_188277.1 57866634 3240740 complement(689242..689853) 1 NC_002976.3 identified by similarity to OMNI:NTL02SA1097; hypothetical protein 689853 3240740 SERP0693 Staphylococcus epidermidis RP62A hypothetical protein YP_188277.1 689242 R 176279 CDS YP_188278.1 57866635 3240741 690030..690851 1 NC_002976.3 identified by match to protein family HMM PF00459; inositol monophosphatase 690851 3240741 SERP0694 Staphylococcus epidermidis RP62A inositol monophosphatase YP_188278.1 690030 D 176279 CDS YP_188279.1 57866636 3240742 complement(691405..691596) 1 NC_002976.3 identified by similarity to OMNI:SA1117; hypothetical protein 691596 3240742 SERP0695 Staphylococcus epidermidis RP62A hypothetical protein YP_188279.1 691405 R 176279 CDS YP_188280.1 57866637 3240743 691695..693542 1 NC_002976.3 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 693542 3240743 SERP0696 Staphylococcus epidermidis RP62A GTP-binding protein TypA YP_188280.1 691695 D 176279 CDS YP_188281.1 57866638 3240744 693996..695009 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 695009 3240744 SERP0697 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188281.1 693996 D 176279 CDS YP_188282.1 57866646 3240753 complement(696078..696233) 1 NC_002976.3 identified by similarity to OMNI:SA1119; hypothetical protein 696233 3240753 SERP0699 Staphylococcus epidermidis RP62A hypothetical protein YP_188282.1 696078 R 176279 CDS YP_188283.1 57866647 3240754 complement(696235..696717) 1 NC_002976.3 identified by similarity to OMNI:SA1120; hypothetical protein 696717 3240754 SERP0700 Staphylococcus epidermidis RP62A hypothetical protein YP_188283.1 696235 R 176279 CDS YP_188284.1 57866648 3242112 696862..697137 1 NC_002976.3 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein; hypothetical protein 697137 3242112 SERP0701 Staphylococcus epidermidis RP62A hypothetical protein YP_188284.1 696862 D 176279 CDS YP_188285.1 57866649 3242113 complement(697382..697516) 1 NC_002976.3 hypothetical protein 697516 3242113 SERP0702 Staphylococcus epidermidis RP62A hypothetical protein YP_188285.1 697382 R 176279 CDS YP_188286.1 57866650 3242114 697539..698762 1 NC_002976.3 identified by match to protein family HMM PF01098; cell cycle protein FtsW 698762 3242114 SERP0703 Staphylococcus epidermidis RP62A cell cycle protein FtsW YP_188286.1 697539 D 176279 CDS YP_188287.1 57866651 3242115 699164..702607 1 NC_002976.3 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 702607 pyc 3242115 pyc Staphylococcus epidermidis RP62A pyruvate carboxylase YP_188287.1 699164 D 176279 CDS YP_188288.1 57866652 3242116 complement(702756..703664) 1 NC_002976.3 identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 703664 ctaA 3242116 ctaA Staphylococcus epidermidis RP62A cytochrome oxidase assembly protein YP_188288.1 702756 R 176279 CDS YP_188289.1 57866667 3241377 703965..704876 1 NC_002976.3 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 704876 ctaB 3241377 ctaB Staphylococcus epidermidis RP62A protoheme IX farnesyltransferase YP_188289.1 703965 D 176279 CDS YP_188290.1 57866668 3241378 704902..705363 1 NC_002976.3 identified by similarity to OMNI:SA1126; match to protein family HMM PF04238; hypothetical protein 705363 3241378 SERP0707 Staphylococcus epidermidis RP62A hypothetical protein YP_188290.1 704902 D 176279 CDS YP_188291.1 57866669 3241379 705805..706857 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1003; hypothetical protein 706857 3241379 SERP0708 Staphylococcus epidermidis RP62A hypothetical protein YP_188291.1 705805 D 176279 CDS YP_188292.1 57866615 3241051 706878..707312 1 NC_002976.3 identified by similarity to EGAD:108190; hypothetical protein 707312 3241051 SERP0709 Staphylococcus epidermidis RP62A hypothetical protein YP_188292.1 706878 D 176279 CDS YP_188293.1 57866616 3241052 complement(707827..708753) 1 NC_002976.3 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 708753 3241052 SERP0710 Staphylococcus epidermidis RP62A glycerophosphoryl diester phosphodiesterase YP_188293.1 707827 R 176279 CDS YP_188294.1 57866623 3241059 708783..708902 1 NC_002976.3 hypothetical protein 708902 3241059 SERP0711 Staphylococcus epidermidis RP62A hypothetical protein YP_188294.1 708783 D 176279 CDS YP_188295.1 57866624 3241060 708974..709225 1 NC_002976.3 identified by similarity to OMNI:SA1131; hypothetical protein 709225 3241060 SERP0712 Staphylococcus epidermidis RP62A hypothetical protein YP_188295.1 708974 D 176279 CDS YP_188296.1 57866625 3241061 complement(709235..709624) 1 NC_002976.3 identified by similarity to OMNI:SA1132; hypothetical protein 709624 3241061 SERP0713 Staphylococcus epidermidis RP62A hypothetical protein YP_188296.1 709235 R 176279 CDS YP_188297.1 57866626 3241062 709691..710233 1 NC_002976.3 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; hypothetical protein 710233 3241062 SERP0714 Staphylococcus epidermidis RP62A hypothetical protein YP_188297.1 709691 D 176279 CDS YP_188298.1 57866627 3241063 710235..710720 1 NC_002976.3 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 710720 coaD 3241063 coaD Staphylococcus epidermidis RP62A phosphopantetheine adenylyltransferase YP_188298.1 710235 D 176279 CDS YP_188299.1 57866628 3241064 complement(711124..712257) 1 NC_002976.3 identified by similarity to OMNI:SA1135; match to protein family HMM PF05636; hypothetical protein 712257 3241064 SERP0716 Staphylococcus epidermidis RP62A hypothetical protein YP_188299.1 711124 R 176279 CDS YP_188300.1 57866629 3241065 712384..712938 1 NC_002976.3 identified by similarity to OMNI:SA1136; match to protein family HMM PF02620; hypothetical protein 712938 3241065 SERP0717 Staphylococcus epidermidis RP62A hypothetical protein YP_188300.1 712384 D 176279 CDS YP_188301.1 57866630 3241066 713016..713189 1 NC_002976.3 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 713189 rpmF 3241066 rpmF Staphylococcus epidermidis RP62A 50S ribosomal protein L32 YP_188301.1 713016 D 176279 CDS YP_188302.1 57866639 3240745 complement(713669..716143) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein 716143 3240745 SERP0719 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_188302.1 713669 R 176279 CDS YP_188303.1 57866640 3240746 716482..717222 1 NC_002976.3 identified by match to protein family HMM PF00588; RNA methyltransferase 717222 3240746 SERP0720 Staphylococcus epidermidis RP62A RNA methyltransferase YP_188303.1 716482 D 176279 CDS YP_188304.1 57866641 3240747 717590..718648 1 NC_002976.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 718648 pheS 3240747 pheS Staphylococcus epidermidis RP62A phenylalanyl-tRNA synthetase subunit alpha YP_188304.1 717590 D 176279 CDS YP_188305.1 57866642 3240748 718648..721050 1 NC_002976.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 721050 pheT 3240748 pheT Staphylococcus epidermidis RP62A phenylalanyl-tRNA synthetase subunit beta YP_188305.1 718648 D 176279 CDS YP_188306.1 57866643 3240749 complement(721102..722028) 1 NC_002976.3 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 722028 rnhC 3240749 rnhC Staphylococcus epidermidis RP62A ribonuclease HIII YP_188306.1 721102 R 176279 CDS YP_188307.1 57866644 3240750 722287..722553 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1025; match to protein family HMM PF05164; hypothetical protein 722553 3240750 SERP0724 Staphylococcus epidermidis RP62A hypothetical protein YP_188307.1 722287 D 176279 CDS YP_188308.1 57866645 3240751 722554..723075 1 NC_002976.3 identified by match to protein family HMM PF02674; bacteriocin production protein 723075 3240751 SERP0725 Staphylococcus epidermidis RP62A bacteriocin production protein YP_188308.1 722554 D 176279 CDS YP_188309.1 57866653 3242117 723150..724859 1 NC_002976.3 identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 724859 3242117 SERP0726 Staphylococcus epidermidis RP62A hypothetical protein YP_188309.1 723150 D 176279 CDS YP_188310.1 57866654 3242118 724869..727217 1 NC_002976.3 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 727217 3242118 SERP0727 Staphylococcus epidermidis RP62A recombination and DNA strand exchange inhibitor protein YP_188310.1 724869 D 176279 CDS YP_188311.1 57866655 3242119 727476..727790 1 NC_002976.3 identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 727790 trxA 3242119 trxA Staphylococcus epidermidis RP62A thioredoxin YP_188311.1 727476 D 176279 CDS YP_188312.1 57866656 3242120 727888..729672 1 NC_002976.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 729672 uvrC 3242120 uvrC Staphylococcus epidermidis RP62A excinuclease ABC subunit C YP_188312.1 727888 D 176279 CDS YP_188313.1 57866657 3242121 730038..730652 1 NC_002976.3 identified by similarity to EGAD:20778; succinate dehydrogenase, cytochrome b558 subunit 730652 sdhC 3242121 sdhC Staphylococcus epidermidis RP62A succinate dehydrogenase, cytochrome b558 subunit YP_188313.1 730038 D 176279 CDS YP_188314.1 57866658 3241368 730806..732572 1 NC_002976.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 732572 sdhA 3241368 sdhA Staphylococcus epidermidis RP62A succinate dehydrogenase flavoprotein subunit YP_188314.1 730806 D 176279 CDS YP_188315.1 57866659 3241369 732572..733414 1 NC_002976.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 733414 sdhB 3241369 sdhB Staphylococcus epidermidis RP62A succinate dehydrogenase iron-sulfur subunit YP_188315.1 732572 D 176279 CDS YP_188316.1 57866660 3241370 733577..734380 1 NC_002976.3 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 734380 murI 3241370 murI Staphylococcus epidermidis RP62A glutamate racemase YP_188316.1 733577 D 176279 CDS YP_188317.1 57866661 3241371 734395..734982 1 NC_002976.3 hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 734982 3241371 SERP0734 Staphylococcus epidermidis RP62A nucleoside-triphosphatase YP_188317.1 734395 D 176279 CDS YP_188318.1 57866662 3241372 734975..735484 1 NC_002976.3 identified by match to protein family HMM PF01143; match to protein family HMM TIGR00040; phosphoesterase 735484 3241372 SERP0735 Staphylococcus epidermidis RP62A phosphoesterase YP_188318.1 734975 D 176279 CDS YP_188319.1 57866663 3241373 736115..736279 1 NC_002976.3 identified by match to protein family HMM PF05480; phenol soluble modulin beta 1 736279 3241373 SERP0736 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_188319.1 736115 D 176279 CDS YP_188320.1 57866664 3241374 736335..736469 1 NC_002976.3 identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 736469 3241374 SERP0737 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_188320.1 736335 D 176279 CDS YP_188321.1 57866665 3241375 736521..736655 1 NC_002976.3 identified by match to protein family HMM PF05480; phenol soluble modulin beta 1 736655 3241375 SERP0738 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_188321.1 736521 D 176279 CDS YP_188322.1 57866666 3241376 736711..736845 1 NC_002976.3 identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 736845 3241376 SERP0739 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_188322.1 736711 D 176279 CDS YP_188323.1 57866674 3241384 736952..737638 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 737638 3241384 SERP0740 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188323.1 736952 D 176279 CDS YP_188324.1 57866675 3241385 complement(737745..738185) 1 NC_002976.3 identified by match to protein family HMM PF00583; hypothetical protein 738185 3241385 SERP0741 Staphylococcus epidermidis RP62A hypothetical protein YP_188324.1 737745 R 176279 CDS YP_188325.1 57866676 3241386 738368..739981 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1060; hypothetical protein 739981 3241386 SERP0742 Staphylococcus epidermidis RP62A hypothetical protein YP_188325.1 738368 D 176279 CDS YP_188326.1 57866677 3241387 740125..740556 1 NC_002976.3 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 740556 mraZ 3241387 mraZ Staphylococcus epidermidis RP62A cell division protein MraZ YP_188326.1 740125 D 176279 CDS YP_188327.1 57866678 3241388 740571..741506 1 NC_002976.3 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 741506 mraW 3241388 mraW Staphylococcus epidermidis RP62A S-adenosyl-methyltransferase MraW YP_188327.1 740571 D 176279 CDS YP_188328.1 57866679 3241389 741519..741920 1 NC_002976.3 identified by similarity to EGAD:21242; cell division protein FtsL 741920 ftsL 3241389 ftsL Staphylococcus epidermidis RP62A cell division protein FtsL YP_188328.1 741519 D 176279 CDS YP_188329.1 57866680 3241390 741901..744228 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1064; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 1 744228 pbp1 3241390 pbp1 Staphylococcus epidermidis RP62A penicillin-binding protein 1 YP_188329.1 741901 D 176279 CDS YP_188330.1 57866681 3241391 744417..745382 1 NC_002976.3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 745382 mraY 3241391 mraY Staphylococcus epidermidis RP62A phospho-N-acetylmuramoyl-pentapeptide- transferase YP_188330.1 744417 D 176279 CDS YP_188331.1 57866690 3241404 745384..746733 1 NC_002976.3 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 746733 murD 3241404 murD Staphylococcus epidermidis RP62A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_188331.1 745384 D 176279 CDS YP_188332.1 57866691 3241405 746749..748140 1 NC_002976.3 identified by similarity to OMNI:SA1197; match to protein family HMM PF03799; cell division protein FtsQ 748140 3241405 SERP0749 Staphylococcus epidermidis RP62A cell division protein FtsQ YP_188332.1 746749 D 176279 CDS YP_188333.1 57866692 3241406 748246..749640 1 NC_002976.3 identified by similarity to SP:O07325; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 749640 ftsA 3241406 ftsA Staphylococcus epidermidis RP62A cell division protein FtsA YP_188333.1 748246 D 176279 CDS YP_188334.1 57866693 3241407 749673..750857 1 NC_002976.3 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 750857 ftsZ 3241407 ftsZ Staphylococcus epidermidis RP62A cell division protein FtsZ YP_188334.1 749673 D 176279 CDS YP_188335.1 57866694 3241408 751273..752064 1 NC_002976.3 identified by similarity to SP:Q9ZHA4; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 752064 3241408 SERP0752 Staphylococcus epidermidis RP62A hypothetical protein YP_188335.1 751273 D 176279 CDS YP_188336.1 57866695 3241409 752090..752758 1 NC_002976.3 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 752758 3241409 SERP0753 Staphylococcus epidermidis RP62A hypothetical protein YP_188336.1 752090 D 176279 CDS YP_188337.1 57866696 3241410 752772..753365 1 NC_002976.3 identified by similarity to GP:4009494; match to protein family HMM PF04472; hypothetical protein 753365 ylmF 3241410 ylmF Staphylococcus epidermidis RP62A hypothetical protein YP_188337.1 752772 D 176279 CDS YP_188338.1 57866697 3241411 753377..753667 1 NC_002976.3 identified by match to protein family HMM PF02325; hypothetical protein 753667 ylmG 3241411 ylmG Staphylococcus epidermidis RP62A hypothetical protein YP_188338.1 753377 D 176279 CDS YP_188339.1 57866705 3242824 753923..754585 1 NC_002976.3 identified by similarity to GP:4009496; match to protein family HMM PF01479; hypothetical protein 754585 ylmH 3242824 ylmH Staphylococcus epidermidis RP62A hypothetical protein YP_188339.1 753923 D 176279 CDS YP_188340.1 57866706 3242825 754608..755264 1 NC_002976.3 identified by match to protein family HMM PF05103; cell-division initiation protein 755264 3242825 SERP0757 Staphylococcus epidermidis RP62A cell-division initiation protein YP_188340.1 754608 D 176279 CDS YP_188341.1 57866707 3242826 755578..758328 1 NC_002976.3 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 758328 ileS 3242826 ileS Staphylococcus epidermidis RP62A isoleucyl-tRNA synthetase YP_188341.1 755578 D 176279 CDS YP_188342.1 57866708 3242827 758955..759050 1 NC_002976.3 hypothetical protein 759050 3242827 SERP0759 Staphylococcus epidermidis RP62A hypothetical protein YP_188342.1 758955 D 176279 CDS YP_188343.1 57866709 3242828 759097..759894 1 NC_002976.3 glyoxalase 759894 3242828 SERP0760 Staphylococcus epidermidis RP62A glyoxalase YP_188343.1 759097 D 176279 CDS YP_188344.1 57866710 3242829 759899..760369 1 NC_002976.3 identified by match to protein family HMM PF05257; LysM domain-containing protein 760369 3242829 SERP0761 Staphylococcus epidermidis RP62A LysM domain-containing protein YP_188344.1 759899 D 176279 CDS YP_188345.1 57866711 3242830 760458..760943 1 NC_002976.3 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 760943 lspA 3242830 lspA Staphylococcus epidermidis RP62A lipoprotein signal peptidase YP_188345.1 760458 D 176279 CDS YP_188346.1 57866712 3242831 760946..761863 1 NC_002976.3 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 761863 3242831 SERP0763 Staphylococcus epidermidis RP62A ribosomal large subunit pseudouridine synthase D YP_188346.1 760946 D 176279 CDS YP_188347.1 57866721 3242840 762165..762692 1 NC_002976.3 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 762692 pyrR 3242840 pyrR Staphylococcus epidermidis RP62A bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_188347.1 762165 D 176279 CDS YP_188348.1 57866722 3242841 762940..764232 1 NC_002976.3 identified by similarity to EGAD:18534; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 764232 uraA 3242841 uraA Staphylococcus epidermidis RP62A uracil permease YP_188348.1 762940 D 176279 CDS YP_188349.1 57866723 3242842 764258..765139 1 NC_002976.3 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 765139 pyrB 3242842 pyrB Staphylococcus epidermidis RP62A aspartate carbamoyltransferase YP_188349.1 764258 D 176279 CDS YP_188350.1 57866724 3242843 765157..766434 1 NC_002976.3 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 766434 pyrC 3242843 pyrC Staphylococcus epidermidis RP62A dihydroorotase YP_188350.1 765157 D 176279 CDS YP_188351.1 57866725 3242844 766435..767535 1 NC_002976.3 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 767535 carA 3242844 carA Staphylococcus epidermidis RP62A carbamoyl phosphate synthase small subunit YP_188351.1 766435 D 176279 CDS YP_188352.1 57866726 3241392 767528..770701 1 NC_002976.3 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 770701 carB 3241392 carB Staphylococcus epidermidis RP62A carbamoyl phosphate synthase large subunit YP_188352.1 767528 D 176279 CDS YP_188353.1 57866727 3241393 770736..771428 1 NC_002976.3 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 771428 pyrF 3241393 pyrF Staphylococcus epidermidis RP62A orotidine 5'-phosphate decarboxylase YP_188353.1 770736 D 176279 CDS YP_188354.1 57866736 3240987 771429..772040 1 NC_002976.3 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 772040 pyrE 3240987 pyrE Staphylococcus epidermidis RP62A orotate phosphoribosyltransferase YP_188354.1 771429 D 176279 CDS YP_188355.1 57866737 3240988 772066..772272 1 NC_002976.3 identified by similarity to OMNI:SA1218; hypothetical protein 772272 3240988 SERP0772 Staphylococcus epidermidis RP62A hypothetical protein YP_188355.1 772066 D 176279 CDS YP_188356.1 57866738 3240989 complement(772548..772682) 1 NC_002976.3 hypothetical protein 772682 3240989 SERP0773 Staphylococcus epidermidis RP62A hypothetical protein YP_188356.1 772548 R 176279 CDS YP_188357.1 57866739 3240990 772813..773220 1 NC_002976.3 identified by similarity to OMNI:SA1219; hypothetical protein 773220 3240990 SERP0774 Staphylococcus epidermidis RP62A hypothetical protein YP_188357.1 772813 D 176279 CDS YP_188358.1 57866740 3240991 complement(773283..774980) 1 NC_002976.3 identified by similarity to OMNI:SA1220; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin/fibrinogen binding protein 774980 fbe 3240991 fbe Staphylococcus epidermidis RP62A fibronectin/fibrinogen binding protein YP_188358.1 773283 R 176279 CDS YP_188359.1 57866741 3240992 775250..775873 1 NC_002976.3 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 775873 gmk 3240992 gmk Staphylococcus epidermidis RP62A guanylate kinase YP_188359.1 775250 D 176279 CDS YP_188360.1 57866742 3240993 775873..776085 1 NC_002976.3 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 776085 rpoZ 3240993 rpoZ Staphylococcus epidermidis RP62A DNA-directed RNA polymerase subunit omega YP_188360.1 775873 D 176279 CDS YP_188361.1 57866743 3240994 776624..777823 1 NC_002976.3 identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 777823 coaBC 3240994 coaBC Staphylococcus epidermidis RP62A phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_188361.1 776624 D 176279 CDS YP_188362.1 57866751 3241002 777823..780231 1 NC_002976.3 identified by similarity to EGAD:98914; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N' 780231 priA 3241002 priA Staphylococcus epidermidis RP62A primosomal protein N' YP_188362.1 777823 D 176279 CDS YP_188363.1 57866752 3241003 complement(780337..780540) 1 NC_002976.3 identified by similarity to OMNI:SA1226; match to protein family HMM PF05154; hypothetical protein 780540 3241003 SERP0780 Staphylococcus epidermidis RP62A hypothetical protein YP_188363.1 780337 R 176279 CDS YP_188364.1 57866753 3241004 780762..781250 1 NC_002976.3 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 781250 def-2 3241004 def-2 Staphylococcus epidermidis RP62A peptide deformylase YP_188364.1 780762 D 176279 CDS YP_188365.1 57866754 3241559 781243..782175 1 NC_002976.3 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 782175 fmt 3241559 fmt Staphylococcus epidermidis RP62A methionyl-tRNA formyltransferase YP_188365.1 781243 D 176279 CDS YP_188366.1 57866755 3241560 782172..783479 1 NC_002976.3 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 783479 sun 3241560 sun Staphylococcus epidermidis RP62A sun protein YP_188366.1 782172 D 176279 CDS YP_188367.1 57866756 3241561 783482..784576 1 NC_002976.3 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 784576 3241561 SERP0784 Staphylococcus epidermidis RP62A ribosomal RNA large subunit methyltransferase N YP_188367.1 783482 D 176279 CDS YP_188368.1 57866757 3241562 784583..785326 1 NC_002976.3 identified by match to protein family HMM PF00481; protein phosphatase 2C 785326 3241562 SERP0785 Staphylococcus epidermidis RP62A protein phosphatase 2C YP_188368.1 784583 D 176279 CDS YP_188369.1 57866758 3241563 785323..787323 1 NC_002976.3 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 787323 3241563 SERP0786 Staphylococcus epidermidis RP62A serine/threonine protein kinase YP_188369.1 785323 D 176279 CDS YP_188370.1 57866767 3241572 787632..788507 1 NC_002976.3 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 788507 3241572 SERP0787 Staphylococcus epidermidis RP62A hypothetical protein YP_188370.1 787632 D 176279 CDS YP_188371.1 57866768 3241573 788508..789152 1 NC_002976.3 identified by similarity to EGAD:101737; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 789152 rpe 3241573 rpe Staphylococcus epidermidis RP62A ribulose-phosphate 3-epimerase YP_188371.1 788508 D 176279 CDS YP_188372.1 57866769 3241574 789157..789792 1 NC_002976.3 identified by similarity to EGAD:108271; match to protein family HMM PF04263; match to protein family HMM PF04265; hypothetical protein 789792 3241574 SERP0789 Staphylococcus epidermidis RP62A hypothetical protein YP_188372.1 789157 D 176279 CDS YP_188373.1 57866770 3241575 complement(789876..790064) 1 NC_002976.3 required for 70S ribosome assembly; 50S ribosomal protein L28 790064 rpmB 3241575 rpmB Staphylococcus epidermidis RP62A 50S ribosomal protein L28 YP_188373.1 789876 R 176279 CDS YP_188374.1 57866771 3241576 790422..790796 1 NC_002976.3 identified by similarity to OMNI:SA1239; match to protein family HMM PF03780; hypothetical protein 790796 3241576 SERP0791 Staphylococcus epidermidis RP62A hypothetical protein YP_188374.1 790422 D 176279 CDS YP_188375.1 57866772 3241577 790811..792469 1 NC_002976.3 identified by match to protein family HMM PF02734; DAK2 domain-containing protein 792469 3241577 SERP0792 Staphylococcus epidermidis RP62A DAK2 domain-containing protein YP_188375.1 790811 D 176279 CDS YP_188376.1 57866670 3241380 792673..794721 1 NC_002976.3 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 794721 recG 3241380 recG Staphylococcus epidermidis RP62A ATP-dependent DNA helicase RecG YP_188376.1 792673 D 176279 CDS YP_188377.1 57866671 3241381 794867..795442 1 NC_002976.3 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 795442 3241381 SERP0794 Staphylococcus epidermidis RP62A fatty acid biosynthesis transcriptional regulator YP_188377.1 794867 D 176279 CDS YP_188378.1 57866672 3241382 795444..796421 1 NC_002976.3 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 796421 plsX 3241382 plsX Staphylococcus epidermidis RP62A glycerol-3-phosphate acyltransferase PlsX YP_188378.1 795444 D 176279 CDS YP_188379.1 57866673 3241383 796423..797352 1 NC_002976.3 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 797352 fabD 3241383 fabD Staphylococcus epidermidis RP62A malonyl CoA-ACP transacylase YP_188379.1 796423 D 176279 CDS YP_188380.1 57866682 3241396 797345..798079 1 NC_002976.3 identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM PF00678; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 798079 fabG 3241396 fabG Staphylococcus epidermidis RP62A 3-oxoacyl-ACP reductase YP_188380.1 797345 D 176279 CDS YP_188381.1 57866683 3241397 798242..798475 1 NC_002976.3 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 798475 acpP 3241397 acpP Staphylococcus epidermidis RP62A acyl carrier protein YP_188381.1 798242 D 176279 CDS YP_188382.1 57866684 3241398 798590..799327 1 NC_002976.3 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 799327 rnc 3241398 rnc Staphylococcus epidermidis RP62A ribonuclease III YP_188382.1 798590 D 176279 CDS YP_188383.1 57866685 3241399 799454..803023 1 NC_002976.3 identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR00650; chromosome segregation SMC protein 803023 3241399 SERP0800 Staphylococcus epidermidis RP62A chromosome segregation SMC protein YP_188383.1 799454 D 176279 CDS YP_188384.1 57866686 3241400 803020..804246 1 NC_002976.3 identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; match to protein family HMM TIGR00961; cell division protein FtsY 804246 ftsY 3241400 ftsY Staphylococcus epidermidis RP62A cell division protein FtsY YP_188384.1 803020 D 176279 CDS YP_188385.1 57866687 3241401 804248..804580 1 NC_002976.3 identified by similarity to OMNI:SA1252; match to protein family HMM PF04297; DNA-binding protein 804580 3241401 SERP0802 Staphylococcus epidermidis RP62A DNA-binding protein YP_188385.1 804248 D 176279 CDS YP_188386.1 57866688 3241402 804611..805978 1 NC_002976.3 identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 805978 ffh 3241402 ffh Staphylococcus epidermidis RP62A signal recognition particle protein YP_188386.1 804611 D 176279 CDS YP_188387.1 57866689 3241403 806285..806560 1 NC_002976.3 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 806560 rpsP 3241403 rpsP Staphylococcus epidermidis RP62A 30S ribosomal protein S16 YP_188387.1 806285 D 176279 CDS YP_188388.1 57866698 3241412 806687..807190 1 NC_002976.3 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 807190 rimM 3241412 rimM Staphylococcus epidermidis RP62A 16S rRNA-processing protein RimM YP_188388.1 806687 D 176279 CDS YP_188389.1 57866699 3241413 807190..807927 1 NC_002976.3 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 807927 trmD 3241413 trmD Staphylococcus epidermidis RP62A tRNA (guanine-N(1)-)-methyltransferase YP_188389.1 807190 D 176279 CDS YP_188390.1 57866700 3241414 808032..808382 1 NC_002976.3 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 808382 rplS 3241414 rplS Staphylococcus epidermidis RP62A 50S ribosomal protein L19 YP_188390.1 808032 D 176279 CDS YP_188391.1 57866701 3241416 complement(811159..813759) 1 NC_002976.3 identified by similarity to OMNI:SA1259; hypothetical protein 813759 3241416 SERP0809 Staphylococcus epidermidis RP62A hypothetical protein YP_188391.1 811159 R 176279 CDS YP_188392.1 57866702 3241417 813903..814067 1 NC_002976.3 hypothetical protein 814067 3241417 SERP0810 Staphylococcus epidermidis RP62A hypothetical protein YP_188392.1 813903 D 176279 CDS YP_188393.1 57866703 3241418 814088..814951 1 NC_002976.3 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 814951 rbgA 3241418 rbgA Staphylococcus epidermidis RP62A ribosomal biogenesis GTPase YP_188393.1 814088 D 176279 CDS YP_188394.1 57866704 3241419 814956..815726 1 NC_002976.3 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 815726 rnhB 3241419 rnhB Staphylococcus epidermidis RP62A ribonuclease HII YP_188394.1 814956 D 176279 CDS YP_188395.1 57866713 3242832 815834..817000 1 NC_002976.3 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 817000 sucC 3242832 sucC Staphylococcus epidermidis RP62A succinyl-CoA synthetase subunit beta YP_188395.1 815834 D 176279 CDS YP_188396.1 57866714 3242833 817022..817930 1 NC_002976.3 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 817930 sucD 3242833 sucD Staphylococcus epidermidis RP62A succinyl-CoA synthetase subunit alpha YP_188396.1 817022 D 176279 CDS YP_188397.1 57866715 3242834 818735..819607 1 NC_002976.3 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA 819607 3242834 SERP0815 Staphylococcus epidermidis RP62A DNA processing protein DprA YP_188397.1 818735 D 176279 CDS YP_188398.1 57866716 3242835 819790..821859 1 NC_002976.3 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 821859 topA 3242835 topA Staphylococcus epidermidis RP62A DNA topoisomerase I YP_188398.1 819790 D 176279 CDS YP_188399.1 57866717 3242836 821884..823191 1 NC_002976.3 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 823191 3242836 SERP0817 Staphylococcus epidermidis RP62A tRNA (uracil-5-)-methyltransferase Gid YP_188399.1 821884 D 176279 CDS YP_188400.1 57866718 3242837 823416..824306 1 NC_002976.3 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerC 824306 xerC 3242837 xerC Staphylococcus epidermidis RP62A tyrosine recombinase XerC YP_188400.1 823416 D 176279 CDS YP_188401.1 57866719 3242838 824310..824852 1 NC_002976.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 824852 hslV 3242838 hslV Staphylococcus epidermidis RP62A ATP-dependent protease peptidase subunit YP_188401.1 824310 D 176279 CDS YP_188402.1 57866720 3242839 824921..826324 1 NC_002976.3 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 826324 hslU 3242839 hslU Staphylococcus epidermidis RP62A ATP-dependent protease ATP-binding subunit HslU YP_188402.1 824921 D 176279 CDS YP_188403.1 57866728 3241394 826348..827118 1 NC_002976.3 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 827118 codY 3241394 codY Staphylococcus epidermidis RP62A transcriptional repressor CodY YP_188403.1 826348 D 176279 CDS YP_188404.1 57866729 3241395 827327..827422 1 NC_002976.3 hypothetical protein 827422 3241395 SERP0822 Staphylococcus epidermidis RP62A hypothetical protein YP_188404.1 827327 D 176279 CDS YP_188405.1 57866730 3240981 827481..828269 1 NC_002976.3 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 828269 rpsB 3240981 rpsB Staphylococcus epidermidis RP62A 30S ribosomal protein S2 YP_188405.1 827481 D 176279 CDS YP_188406.1 57866731 3240982 828421..829299 1 NC_002976.3 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 829299 tsf 3240982 tsf Staphylococcus epidermidis RP62A elongation factor Ts YP_188406.1 828421 D 176279 CDS YP_188407.1 57866732 3240983 829440..830162 1 NC_002976.3 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 830162 pyrH 3240983 pyrH Staphylococcus epidermidis RP62A uridylate kinase YP_188407.1 829440 D 176279 CDS YP_188408.1 57866733 3240984 830179..830733 1 NC_002976.3 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 830733 frr 3240984 frr Staphylococcus epidermidis RP62A ribosome recycling factor YP_188408.1 830179 D 176279 CDS YP_188409.1 57866734 3240985 830954..831724 1 NC_002976.3 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 831724 uppS 3240985 uppS Staphylococcus epidermidis RP62A undecaprenyl pyrophosphate synthase YP_188409.1 830954 D 176279 CDS YP_188410.1 57866735 3240986 831728..832510 1 NC_002976.3 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 832510 cdsA 3240986 cdsA Staphylococcus epidermidis RP62A phosphatidate cytidylyltransferase YP_188410.1 831728 D 176279 CDS YP_188411.1 57866744 3240995 832744..834030 1 NC_002976.3 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; zinc metalloprotease 834030 3240995 SERP0829 Staphylococcus epidermidis RP62A zinc metalloprotease YP_188411.1 832744 D 176279 CDS YP_188412.1 57866745 3240996 834049..835752 1 NC_002976.3 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 835752 proS 3240996 proS Staphylococcus epidermidis RP62A prolyl-tRNA synthetase YP_188412.1 834049 D 176279 CDS YP_188413.1 57866746 3240997 836002..840312 1 NC_002976.3 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 840312 polC 3240997 polC Staphylococcus epidermidis RP62A DNA polymerase III PolC YP_188413.1 836002 D 176279 CDS YP_188414.1 57866747 3240998 840491..840958 1 NC_002976.3 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 840958 3240998 SERP0832 Staphylococcus epidermidis RP62A hypothetical protein YP_188414.1 840491 D 176279 CDS YP_188415.1 57866748 3240999 840979..842202 1 NC_002976.3 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 842202 nusA 3240999 nusA Staphylococcus epidermidis RP62A transcription elongation factor NusA YP_188415.1 840979 D 176279 CDS YP_188416.1 57866749 3241000 842220..842504 1 NC_002976.3 identified by similarity to OMNI:SA1286; match to protein family HMM PF04296; hypothetical protein 842504 3241000 SERP0834 Staphylococcus epidermidis RP62A hypothetical protein YP_188416.1 842220 D 176279 CDS YP_188417.1 57866750 3241001 842504..842821 1 NC_002976.3 identified by match to protein family HMM PF01248; 50S ribosomal protein L7 842821 3241001 SERP0835 Staphylococcus epidermidis RP62A 50S ribosomal protein L7 YP_188417.1 842504 D 176279 CDS YP_188418.1 57866759 3241564 842826..844988 1 NC_002976.3 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 844988 infB 3241564 infB Staphylococcus epidermidis RP62A translation initiation factor IF-2 YP_188418.1 842826 D 176279 CDS YP_188419.1 57866760 3241565 845291..845641 1 NC_002976.3 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 845641 rbfA 3241565 rbfA Staphylococcus epidermidis RP62A ribosome-binding factor A YP_188419.1 845291 D 176279 CDS YP_188420.1 57866761 3241566 845779..846696 1 NC_002976.3 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 846696 truB 3241566 truB Staphylococcus epidermidis RP62A tRNA pseudouridine synthase B YP_188420.1 845779 D 176279 CDS YP_188421.1 57866762 3241567 846712..847683 1 NC_002976.3 identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 847683 ribF 3241567 ribF Staphylococcus epidermidis RP62A riboflavin biosynthesis protein RibF YP_188421.1 846712 D 176279 CDS YP_188422.1 57866763 3241568 847803..848072 1 NC_002976.3 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 848072 rpsO 3241568 rpsO Staphylococcus epidermidis RP62A 30S ribosomal protein S15 YP_188422.1 847803 D 176279 CDS YP_188423.1 57866764 3241569 848204..850309 1 NC_002976.3 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 850309 pnp 3241569 pnp Staphylococcus epidermidis RP62A polynucleotide phosphorylase YP_188423.1 848204 D 176279 CDS YP_188424.1 57866765 3241570 850644..852350 1 NC_002976.3 identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649; metallo-beta-lactamase 852350 3241570 SERP0842 Staphylococcus epidermidis RP62A metallo-beta-lactamase YP_188424.1 850644 D 176279 CDS YP_188425.1 57866766 3241571 852616..855009 1 NC_002976.3 identified by match to protein family HMM PF01580; DNA translocase FtsK 855009 3241571 SERP0843 Staphylococcus epidermidis RP62A DNA translocase FtsK YP_188425.1 852616 D 176279 CDS YP_188426.1 57866775 3241581 855012..855725 1 NC_002976.3 transcriptional regulator 855725 3241581 SERP0844 Staphylococcus epidermidis RP62A transcriptional regulator YP_188426.1 855012 D 176279 CDS YP_188427.1 57866776 3241582 855756..857027 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1161; match to protein family HMM PF05193; hypothetical protein 857027 3241582 SERP0845 Staphylococcus epidermidis RP62A hypothetical protein YP_188427.1 855756 D 176279 CDS YP_188428.1 57866777 3241583 857027..858316 1 NC_002976.3 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 858316 3241583 SERP0846 Staphylococcus epidermidis RP62A M16 family peptidase YP_188428.1 857027 D 176279 CDS YP_188429.1 57866778 3241584 858313..859017 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase 859017 3241584 SERP0847 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase YP_188429.1 858313 D 176279 CDS YP_188430.1 57866779 3242629 859170..859997 1 NC_002976.3 identified by match to protein family HMM PF01842; ACT domain-containing protein 859997 3242629 SERP0848 Staphylococcus epidermidis RP62A ACT domain-containing protein YP_188430.1 859170 D 176279 CDS YP_188431.1 57866780 3242630 860016..860408 1 NC_002976.3 Cro/CI family transcriptional regulator 860408 3242630 SERP0849 Staphylococcus epidermidis RP62A Cro/CI family transcriptional regulator YP_188431.1 860016 D 176279 CDS YP_188432.1 57866781 3242631 860437..861018 1 NC_002976.3 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 861018 pgsA 3242631 pgsA Staphylococcus epidermidis RP62A CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_188432.1 860437 D 176279 CDS YP_188433.1 57866789 3242640 861468..862616 1 NC_002976.3 identified by similarity to EGAD:108567; match to protein family HMM PF00994; match to protein family HMM TIGR00200; competence/damage-inducible protein CinA 862616 3242640 SERP0851 Staphylococcus epidermidis RP62A competence/damage-inducible protein CinA YP_188433.1 861468 D 176279 CDS YP_188434.1 57866790 3242641 862787..863836 1 NC_002976.3 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 863836 recA 3242641 recA Staphylococcus epidermidis RP62A recombinase A YP_188434.1 862787 D 176279 CDS YP_188435.1 57866791 3242642 864062..865621 1 NC_002976.3 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 865621 3242642 SERP0853 Staphylococcus epidermidis RP62A phosphodiesterase YP_188435.1 864062 D 176279 CDS YP_188436.1 57866792 3242643 complement(865710..865925) 1 NC_002976.3 identified by similarity to OMNI:SA1306; hypothetical protein 865925 3242643 SERP0854 Staphylococcus epidermidis RP62A hypothetical protein YP_188436.1 865710 R 176279 CDS YP_188437.1 57866793 3242644 866089..866883 1 NC_002976.3 identified by similarity to OMNI:SA1307; match to protein family HMM PF00149; match to protein family HMM PF02640; match to protein family HMM TIGR00282; hypothetical protein 866883 3242644 SERP0855 Staphylococcus epidermidis RP62A hypothetical protein YP_188437.1 866089 D 176279 CDS YP_188438.1 57866794 3242645 866996..868756 1 NC_002976.3 identified by similarity to EGAD:21889; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase, alpha subunit 868756 3242645 SERP0856 Staphylococcus epidermidis RP62A pyruvate ferredoxin oxidoreductase, alpha subunit YP_188438.1 866996 D 176279 CDS YP_188439.1 57866795 3242646 868757..869623 1 NC_002976.3 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 869623 3242646 SERP0857 Staphylococcus epidermidis RP62A 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_188439.1 868757 D 176279 CDS YP_188440.1 57866796 3242647 870209..870826 1 NC_002976.3 identified by similarity to EGAD:107468; hypothetical protein 870826 3242647 SERP0858 Staphylococcus epidermidis RP62A hypothetical protein YP_188440.1 870209 D 176279 CDS YP_188441.1 57866804 3240402 870883..871173 1 NC_002976.3 identified by similarity to OMNI:SA1310; hypothetical protein 871173 3240402 SERP0859 Staphylococcus epidermidis RP62A hypothetical protein YP_188441.1 870883 D 176279 CDS YP_188442.1 57866805 3240403 871516..873060 1 NC_002976.3 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 873060 miaB 3240403 miaB Staphylococcus epidermidis RP62A (dimethylallyl)adenosine tRNA methylthiotransferase YP_188442.1 871516 D 176279 CDS YP_188443.1 57866806 3240404 873062..873427 1 NC_002976.3 identified by similarity to OMNI:SA1313; hypothetical protein 873427 3240404 SERP0861 Staphylococcus epidermidis RP62A hypothetical protein YP_188443.1 873062 D 176279 CDS YP_188444.1 57866807 3240405 873451..873945 1 NC_002976.3 identified by similarity to OMNI:SA1314; hypothetical protein 873945 3240405 SERP0862 Staphylococcus epidermidis RP62A hypothetical protein YP_188444.1 873451 D 176279 CDS YP_188445.1 57866808 3240406 874143..876764 1 NC_002976.3 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 876764 hexA 3240406 hexA Staphylococcus epidermidis RP62A DNA mismatch repair protein MutS YP_188445.1 874143 D 176279 CDS YP_188446.1 57866809 3240407 876779..878716 1 NC_002976.3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 878716 mutL 3240407 mutL Staphylococcus epidermidis RP62A DNA mismatch repair protein YP_188446.1 876779 D 176279 CDS YP_188447.1 57866818 3240416 878730..879263 1 NC_002976.3 identified by similarity to EGAD:18158; match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 879263 glpP 3240416 glpP Staphylococcus epidermidis RP62A glycerol uptake operon antiterminator regulatory protein YP_188447.1 878730 D 176279 CDS YP_188448.1 57866819 3240417 879638..880462 1 NC_002976.3 identified by similarity to EGAD:21817; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 880462 glpF 3240417 glpF Staphylococcus epidermidis RP62A glycerol uptake facilitator protein YP_188448.1 879638 D 176279 CDS YP_188449.1 57866820 3240418 880616..882115 1 NC_002976.3 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 882115 glpK 3240418 glpK Staphylococcus epidermidis RP62A glycerol kinase YP_188449.1 880616 D 176279 CDS YP_188450.1 57866821 3240419 882292..883965 1 NC_002976.3 identified by similarity to EGAD:18115; match to protein family HMM PF01224; match to protein family HMM PF01266; aerobic glycerol-3-phosphate dehydrogenase 883965 glpD 3240419 glpD Staphylococcus epidermidis RP62A aerobic glycerol-3-phosphate dehydrogenase YP_188450.1 882292 D 176279 CDS YP_188451.1 57866822 3240420 884189..885115 1 NC_002976.3 alpha/beta hydrolase 885115 3240420 SERP0869 Staphylococcus epidermidis RP62A alpha/beta hydrolase YP_188451.1 884189 D 176279 CDS YP_188452.1 57866823 3240421 885127..886125 1 NC_002976.3 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 886125 miaA 3240421 miaA Staphylococcus epidermidis RP62A tRNA delta(2)-isopentenylpyrophosphate transferase YP_188452.1 885127 D 176279 CDS YP_188453.1 57866824 3240422 886079..886318 1 NC_002976.3 identified by match to protein family HMM PF01423; match to protein family HMM PF03329; host factor-I protein 886318 3240422 SERP0871 Staphylococcus epidermidis RP62A host factor-I protein YP_188453.1 886079 D 176279 CDS YP_188454.1 57866833 3241506 complement(886540..887016) 1 NC_002976.3 identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase 887016 gpxA-1 3241506 gpxA-1 Staphylococcus epidermidis RP62A glutathione peroxidase YP_188454.1 886540 R 176279 CDS YP_188455.1 57866834 3241507 887117..888367 1 NC_002976.3 identified by match to protein family HMM PF04471; GTP-binding protein 888367 3241507 SERP0873 Staphylococcus epidermidis RP62A GTP-binding protein YP_188455.1 887117 D 176279 CDS YP_188456.1 57866835 3241508 888383..889621 1 NC_002976.3 identified by similarity to OMNI:SA1327; hypothetical protein 889621 3241508 SERP0874 Staphylococcus epidermidis RP62A hypothetical protein YP_188456.1 888383 D 176279 CDS YP_188457.1 57866836 3241509 890102..890467 1 NC_002976.3 identified by similarity to EGAD:15799; match to protein family HMM PF00376; glutamine synthetase repressor 890467 glnR 3241509 glnR Staphylococcus epidermidis RP62A glutamine synthetase repressor YP_188457.1 890102 D 176279 CDS YP_188458.1 57866837 3241510 890486..891826 1 NC_002976.3 identified by similarity to EGAD:102439; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase FemC 891826 femC 3241510 femC Staphylococcus epidermidis RP62A glutamine synthetase FemC YP_188458.1 890486 D 176279 CDS YP_188459.1 57866773 3241579 892406..892645 1 NC_002976.3 portal protein, truncation 892645 3241579 SERP0878 Staphylococcus epidermidis RP62A portal protein, truncation YP_188459.1 892406 D 176279 CDS YP_188460.1 57866774 3241580 892710..894056 1 NC_002976.3 identified by similarity to OMNI:NTL02SA0882; match to protein family HMM PF04233; match to protein family HMM TIGR01641; hypothetical protein 894056 3241580 SERP0879 Staphylococcus epidermidis RP62A hypothetical protein YP_188460.1 892710 D 176279 CDS YP_188461.1 57866782 3242632 894062..894253 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1196; hypothetical protein 894253 3242632 SERP0880 Staphylococcus epidermidis RP62A hypothetical protein YP_188461.1 894062 D 176279 CDS YP_188462.1 57866783 3242634 complement(895252..895935) 1 NC_002976.3 surface lipoprotein-related protein 895935 3242634 SERP0882 Staphylococcus epidermidis RP62A surface lipoprotein-related protein YP_188462.1 895252 R 176279 CDS YP_188463.1 57866784 3242635 complement(896005..897030) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1197; hypothetical protein 897030 3242635 SERP0883 Staphylococcus epidermidis RP62A hypothetical protein YP_188463.1 896005 R 176279 CDS YP_188464.1 57866785 3242636 897344..897541 1 NC_002976.3 identified by similarity to OMNI:SA1350; hypothetical protein 897541 3242636 SERP0884 Staphylococcus epidermidis RP62A hypothetical protein YP_188464.1 897344 D 176279 CDS YP_188465.1 57866786 3242637 897599..899071 1 NC_002976.3 identified by match to protein family HMM PF00614; cardiolipin synthetase 899071 cls-1 3242637 cls-1 Staphylococcus epidermidis RP62A cardiolipin synthetase YP_188465.1 897599 D 176279 CDS YP_188466.1 57866787 3242638 899249..900124 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 900124 3242638 SERP0886 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188466.1 899249 D 176279 CDS YP_188467.1 57866788 3242639 900121..900852 1 NC_002976.3 ABC transporter permease 900852 3242639 SERP0887 Staphylococcus epidermidis RP62A ABC transporter permease YP_188467.1 900121 D 176279 CDS YP_188468.1 57866797 3242648 900852..901946 1 NC_002976.3 identified by match to protein family HMM PF02518; sensor histidine kinase 901946 3242648 SERP0888 Staphylococcus epidermidis RP62A sensor histidine kinase YP_188468.1 900852 D 176279 CDS YP_188469.1 57866798 3242649 901943..902545 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 902545 3242649 SERP0889 Staphylococcus epidermidis RP62A LuxR family transcriptional regulator YP_188469.1 901943 D 176279 CDS YP_188470.1 57866799 3242650 complement(902714..902902) 1 NC_002976.3 hypothetical protein 902902 3242650 SERP0890 Staphylococcus epidermidis RP62A hypothetical protein YP_188470.1 902714 R 176279 CDS YP_188471.1 57866800 3242651 903067..903603 1 NC_002976.3 identified by match to protein family HMM PF00565; thermonuclease precursor family protein 903603 3242651 SERP0891 Staphylococcus epidermidis RP62A thermonuclease precursor family protein YP_188471.1 903067 D 176279 CDS YP_188472.1 57866801 3242653 complement(904340..905212) 1 NC_002976.3 identified by similarity to OMNI:SA1358; hypothetical protein 905212 3242653 SERP0893 Staphylococcus epidermidis RP62A hypothetical protein YP_188472.1 904340 R 176279 CDS YP_188473.1 57866802 3242654 complement(905415..905540) 1 NC_002976.3 hypothetical protein 905540 3242654 SERP0894 Staphylococcus epidermidis RP62A hypothetical protein YP_188473.1 905415 R 176279 CDS YP_188474.1 57866803 3240401 905539..906138 1 NC_002976.3 identified by similarity to GP:14247097; hypothetical protein 906138 3240401 SERP0895 Staphylococcus epidermidis RP62A hypothetical protein YP_188474.1 905539 D 176279 CDS YP_188475.1 57866810 3240408 complement(906216..907592) 1 NC_002976.3 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 907592 3240408 SERP0896 Staphylococcus epidermidis RP62A aspartate kinase YP_188475.1 906216 R 176279 CDS YP_188476.1 57866811 3240409 907781..909061 1 NC_002976.3 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 909061 hom 3240409 hom Staphylococcus epidermidis RP62A homoserine dehydrogenase YP_188476.1 907781 D 176279 CDS YP_188477.1 57866812 3240410 909067..910131 1 NC_002976.3 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 910131 thrC 3240410 thrC Staphylococcus epidermidis RP62A threonine synthase YP_188477.1 909067 D 176279 CDS YP_188478.1 57866813 3240411 910133..911053 1 NC_002976.3 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 911053 thrB 3240411 thrB Staphylococcus epidermidis RP62A homoserine kinase YP_188478.1 910133 D 176279 CDS YP_188479.1 57866814 3240412 911116..911922 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 911922 3240412 SERP0900 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188479.1 911116 D 176279 CDS YP_188480.1 57866815 3240413 complement(912254..912568) 1 NC_002976.3 identified by similarity to OMNI:SA1366; hypothetical protein 912568 3240413 SERP0901 Staphylococcus epidermidis RP62A hypothetical protein YP_188480.1 912254 R 176279 CDS YP_188481.1 57866816 3240414 complement(912874..914322) 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 914322 3240414 SERP0902 Staphylococcus epidermidis RP62A amino acid permease YP_188481.1 912874 R 176279 CDS YP_188482.1 57866817 3240415 914553..916067 1 NC_002976.3 identified by similarity to GP:7161885; match to protein family HMM PF00199; catalase 916067 katA 3240415 katA Staphylococcus epidermidis RP62A catalase YP_188482.1 914553 D 176279 CDS YP_188483.1 57866825 3240423 916157..916306 1 NC_002976.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 916306 rpmG 3240423 rpmG Staphylococcus epidermidis RP62A 50S ribosomal protein L33 YP_188483.1 916157 D 176279 CDS YP_188484.1 57866826 3240424 916473..916742 1 NC_002976.3 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 916742 rpsN 3240424 rpsN Staphylococcus epidermidis RP62A 30S ribosomal protein S14 YP_188484.1 916473 D 176279 CDS YP_188485.1 57866827 3240425 916896..917873 1 NC_002976.3 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 917873 guaC 3240425 guaC Staphylococcus epidermidis RP62A guanosine 5'-monophosphate oxidoreductase YP_188485.1 916896 D 176279 CDS YP_188486.1 57866828 3240426 917887..918912 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1219; match to protein family HMM PF00188; hypothetical protein 918912 3240426 SERP0907 Staphylococcus epidermidis RP62A hypothetical protein YP_188486.1 917887 D 176279 CDS YP_188487.1 57866829 3240427 918967..919068 1 NC_002976.3 hypothetical protein 919068 3240427 SERP0908 Staphylococcus epidermidis RP62A hypothetical protein YP_188487.1 918967 D 176279 CDS YP_188488.1 57866830 3241503 complement(919266..919886) 1 NC_002976.3 Represses a number of genes involved in the response to DNA damage; LexA repressor 919886 lexA 3241503 lexA Staphylococcus epidermidis RP62A LexA repressor YP_188488.1 919266 R 176279 CDS YP_188489.1 57866831 3241504 920030..920263 1 NC_002976.3 identified by similarity to OMNI:SA1375; hypothetical protein 920263 3241504 SERP0910 Staphylococcus epidermidis RP62A hypothetical protein YP_188489.1 920030 D 176279 CDS YP_188490.1 57866832 3241505 920424..920660 1 NC_002976.3 identified by similarity to OMNI:SA1376; hypothetical protein 920660 3241505 SERP0911 Staphylococcus epidermidis RP62A hypothetical protein YP_188490.1 920424 D 176279 CDS YP_188491.1 57866841 3241514 920892..922880 1 NC_002976.3 identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 922880 tkt 3241514 tkt Staphylococcus epidermidis RP62A transketolase YP_188491.1 920892 D 176279 CDS YP_188492.1 57866842 3241515 922929..923051 1 NC_002976.3 hypothetical protein 923051 3241515 SERP0913 Staphylococcus epidermidis RP62A hypothetical protein YP_188492.1 922929 D 176279 CDS YP_188493.1 57866843 3241516 923087..923314 1 NC_002976.3 identified by match to protein family HMM PF03672; hypothetical protein 923314 3241516 SERP0914 Staphylococcus epidermidis RP62A hypothetical protein YP_188493.1 923087 D 176279 CDS YP_188494.1 57866844 3241517 923527..924699 1 NC_002976.3 identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 924699 3241517 SERP0915 Staphylococcus epidermidis RP62A IS256-like transposase YP_188494.1 923527 D 176279 CDS YP_188495.1 57866845 3241518 924878..925345 1 NC_002976.3 identified by similarity to OMNI:SA1380; hypothetical protein 925345 3241518 SERP0916 Staphylococcus epidermidis RP62A hypothetical protein YP_188495.1 924878 D 176279 CDS YP_188496.1 57866846 3241519 925453..926577 1 NC_002976.3 identified by similarity to EGAD:9310; match to protein family HMM PF00149; match to protein family HMM PF02549; match to protein family HMM TIGR00619; exonuclease SbcD 926577 sbcD 3241519 sbcD Staphylococcus epidermidis RP62A exonuclease SbcD YP_188496.1 925453 D 176279 CDS YP_188497.1 57866847 3241520 926581..929610 1 NC_002976.3 identified by similarity to EGAD:7288; exonuclease SbcC 929610 sbcC 3241520 sbcC Staphylococcus epidermidis RP62A exonuclease SbcC YP_188497.1 926581 D 176279 CDS YP_188498.1 57866848 3241521 complement(929728..930078) 1 NC_002976.3 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 930078 mscL 3241521 mscL Staphylococcus epidermidis RP62A large-conductance mechanosensitive channel YP_188498.1 929728 R 176279 CDS YP_188499.1 57866849 3241522 930290..931930 1 NC_002976.3 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 931930 3241522 SERP0920 Staphylococcus epidermidis RP62A choline/carnitine/betaine transporter YP_188499.1 930290 D 176279 CDS YP_188500.1 57866857 3241530 932351..935056 1 NC_002976.3 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 935056 acnA 3241530 acnA Staphylococcus epidermidis RP62A aconitate hydratase YP_188500.1 932351 D 176279 CDS YP_188501.1 57866858 3241531 935179..935646 1 NC_002976.3 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 935646 3241531 SERP0922 Staphylococcus epidermidis RP62A thioesterase YP_188501.1 935179 D 176279 CDS YP_188502.1 57866859 3241532 complement(935697..935993) 1 NC_002976.3 identified by similarity to OMNI:SA1387; hypothetical protein 935993 3241532 SERP0923 Staphylococcus epidermidis RP62A hypothetical protein YP_188502.1 935697 R 176279 CDS YP_188503.1 57866860 3241533 complement(936237..936845) 1 NC_002976.3 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 936845 3241533 SERP0924 Staphylococcus epidermidis RP62A hypothetical protein YP_188503.1 936237 R 176279 CDS YP_188504.1 57866861 3241534 937049..939049 1 NC_002976.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 939049 parE 3241534 parE Staphylococcus epidermidis RP62A DNA topoisomerase IV subunit B YP_188504.1 937049 D 176279 CDS YP_188505.1 57866862 3242053 939046..941448 1 NC_002976.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 941448 parC 3242053 parC Staphylococcus epidermidis RP62A DNA topoisomerase IV subunit A YP_188505.1 939046 D 176279 CDS YP_188506.1 57866863 3242054 941660..943117 1 NC_002976.3 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 943117 3242054 SERP0927 Staphylococcus epidermidis RP62A amino acid carrier protein YP_188506.1 941660 D 176279 CDS YP_188507.1 57866864 3242055 943312..944160 1 NC_002976.3 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123; transcriptional antiterminator LicT 944160 3242055 SERP0928 Staphylococcus epidermidis RP62A transcriptional antiterminator LicT YP_188507.1 943312 D 176279 CDS YP_188508.1 57866873 3242064 944306..945523 1 NC_002976.3 identified by similarity to OMNI:SA1395; match to protein family HMM PF01594; hypothetical protein 945523 3242064 SERP0929 Staphylococcus epidermidis RP62A hypothetical protein YP_188508.1 944306 D 176279 CDS YP_188509.1 57866874 3242065 945777..948299 1 NC_002976.3 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; fmtC protein 948299 fmtC 3242065 fmtC Staphylococcus epidermidis RP62A fmtC protein YP_188509.1 945777 D 176279 CDS YP_188510.1 57866875 3242066 complement(948493..949008) 1 NC_002976.3 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 949008 msrA-1 3242066 msrA-1 Staphylococcus epidermidis RP62A methionine sulfoxide reductase A YP_188510.1 948493 R 176279 CDS YP_188511.1 57866876 3242067 949144..950133 1 NC_002976.3 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 950133 3242067 SERP0932 Staphylococcus epidermidis RP62A transcriptional regulator YP_188511.1 949144 D 176279 CDS YP_188512.1 57866877 3242069 complement(950674..950859) 1 NC_002976.3 identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013; 4-oxalocrotonate tautomerase 950859 dmpI 3242069 dmpI Staphylococcus epidermidis RP62A 4-oxalocrotonate tautomerase YP_188512.1 950674 R 176279 CDS YP_188513.1 57866878 3242070 951003..952265 1 NC_002976.3 identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 952265 3242070 SERP0935 Staphylococcus epidermidis RP62A ImpB/MucB/SamB family protein YP_188513.1 951003 D 176279 CDS YP_188514.1 57866879 3242071 complement(952337..953425) 1 NC_002976.3 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 953425 tyrA 3242071 tyrA Staphylococcus epidermidis RP62A prephenate dehydrogenase YP_188514.1 952337 R 176279 CDS YP_188515.1 57866888 3242080 954084..955490 1 NC_002976.3 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 955490 trpE 3242080 trpE Staphylococcus epidermidis RP62A anthranilate synthase component I YP_188515.1 954084 D 176279 CDS YP_188516.1 57866889 3242081 955487..956053 1 NC_002976.3 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 956053 trpG 3242081 trpG Staphylococcus epidermidis RP62A anthranilate synthase component II YP_188516.1 955487 D 176279 CDS YP_188517.1 57866890 3242082 956056..957051 1 NC_002976.3 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 957051 trpD 3242082 trpD Staphylococcus epidermidis RP62A anthranilate phosphoribosyltransferase YP_188517.1 956056 D 176279 CDS YP_188518.1 57866891 3242083 957055..957843 1 NC_002976.3 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 957843 trpC 3242083 trpC Staphylococcus epidermidis RP62A indole-3-glycerol phosphate synthase YP_188518.1 957055 D 176279 CDS YP_188519.1 57866892 3242084 957833..958456 1 NC_002976.3 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 958456 trpF 3242084 trpF Staphylococcus epidermidis RP62A N-(5'-phosphoribosyl)anthranilate isomerase YP_188519.1 957833 D 176279 CDS YP_188520.1 57866893 3242085 958460..959668 1 NC_002976.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 959668 trpB 3242085 trpB Staphylococcus epidermidis RP62A tryptophan synthase subunit beta YP_188520.1 958460 D 176279 CDS YP_188521.1 57866894 3242086 959661..960392 1 NC_002976.3 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 960392 trpA 3242086 trpA Staphylococcus epidermidis RP62A tryptophan synthase subunit alpha YP_188521.1 959661 D 176279 CDS YP_188522.1 57866901 3242010 960583..961242 1 NC_002976.3 identified by match to protein family HMM PF01965; ThiJ/PfpI family protein 961242 3242010 SERP0944 Staphylococcus epidermidis RP62A ThiJ/PfpI family protein YP_188522.1 960583 D 176279 CDS YP_188523.1 57866902 3242011 961418..961540 1 NC_002976.3 hypothetical protein 961540 3242011 SERP0945 Staphylococcus epidermidis RP62A hypothetical protein YP_188523.1 961418 D 176279 CDS YP_188524.1 57866903 3242012 961515..962768 1 NC_002976.3 identified by similarity to EGAD:29547; match to protein family HMM PF02388; femA protein 962768 femA 3242012 femA Staphylococcus epidermidis RP62A femA protein YP_188524.1 961515 D 176279 CDS YP_188525.1 57866904 3242013 962794..964047 1 NC_002976.3 identified by similarity to EGAD:29548; match to protein family HMM PF02388; femB protein 964047 femB 3242013 femB Staphylococcus epidermidis RP62A femB protein YP_188525.1 962794 D 176279 CDS YP_188526.1 57866905 3242014 965066..965830 1 NC_002976.3 hydrolase-related protein 965830 3242014 SERP0948 Staphylococcus epidermidis RP62A hydrolase-related protein YP_188526.1 965066 D 176279 CDS YP_188527.1 57866906 3242015 965895..966905 1 NC_002976.3 identified by match to protein family HMM PF01497; transferrin receptor 966905 3242015 SERP0949 Staphylococcus epidermidis RP62A transferrin receptor YP_188527.1 965895 D 176279 CDS YP_188528.1 57866907 3242016 complement(967035..967730) 1 NC_002976.3 identified by similarity to EGAD:89055; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 967730 3242016 SERP0950 Staphylococcus epidermidis RP62A peptide ABC transporter ATP-binding protein YP_188528.1 967035 R 176279 CDS YP_188529.1 57866908 3242017 complement(967733..968509) 1 NC_002976.3 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 968509 3242017 SERP0951 Staphylococcus epidermidis RP62A peptide ABC transporter ATP-binding protein YP_188529.1 967733 R 176279 CDS YP_188530.1 57866909 3242018 complement(968472..969326) 1 NC_002976.3 identified by similarity to EGAD:9991; match to protein family HMM PF00528; peptide ABC transporter permease 969326 3242018 SERP0952 Staphylococcus epidermidis RP62A peptide ABC transporter permease YP_188530.1 968472 R 176279 CDS YP_188531.1 57866918 3242027 complement(969316..970317) 1 NC_002976.3 identified by match to protein family HMM PF00528; peptide ABC transporter permease 970317 3242027 SERP0953 Staphylococcus epidermidis RP62A peptide ABC transporter permease YP_188531.1 969316 R 176279 CDS YP_188532.1 57866919 3242028 complement(970496..970834) 1 NC_002976.3 identified by similarity to OMNI:SA1418; hypothetical protein 970834 3242028 SERP0954 Staphylococcus epidermidis RP62A hypothetical protein YP_188532.1 970496 R 176279 CDS YP_188533.1 57866920 3242029 971082..972893 1 NC_002976.3 identified by similarity to EGAD:13184; match to protein family HMM PF01432; oligoendopeptidase F 972893 3242029 SERP0955 Staphylococcus epidermidis RP62A oligoendopeptidase F YP_188533.1 971082 D 176279 CDS YP_188534.1 57866921 3242030 complement(972986..973633) 1 NC_002976.3 identified by similarity to EGAD:14202; match to protein family HMM PF01895; phosphate transport system regulatory protein PhoU 973633 3242030 SERP0956 Staphylococcus epidermidis RP62A phosphate transport system regulatory protein PhoU YP_188534.1 972986 R 176279 CDS YP_188535.1 57866922 3242031 complement(973640..974515) 1 NC_002976.3 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 974515 3242031 SERP0957 Staphylococcus epidermidis RP62A phosphate transporter ATP-binding protein YP_188535.1 973640 R 176279 CDS YP_188536.1 57866923 3242032 complement(974603..975508) 1 NC_002976.3 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 975508 3242032 SERP0958 Staphylococcus epidermidis RP62A phosphate ABC transporter permease YP_188536.1 974603 R 176279 CDS YP_188537.1 57866924 3242033 complement(975510..976436) 1 NC_002976.3 identified by match to protein family HMM PF00528; phosphate ABC transporter permease 976436 3242033 SERP0959 Staphylococcus epidermidis RP62A phosphate ABC transporter permease YP_188537.1 975510 R 176279 CDS YP_188538.1 57866941 3242050 complement(976643..977620) 1 NC_002976.3 identified by match to protein family HMM PF01449; match to protein family HMM PF01547; phosphate ABC transporter phosphate-binding protein 977620 3242050 SERP0960 Staphylococcus epidermidis RP62A phosphate ABC transporter phosphate-binding protein YP_188538.1 976643 R 176279 CDS YP_188539.1 57866838 3241511 complement(978238..979134) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1271; hypothetical protein 979134 3241511 SERP0961 Staphylococcus epidermidis RP62A hypothetical protein YP_188539.1 978238 R 176279 CDS YP_188540.1 57866839 3241512 979345..980952 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 980952 3241512 SERP0962 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188540.1 979345 D 176279 CDS YP_188541.1 57866840 3241513 981561..982763 1 NC_002976.3 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 982763 lysC 3241513 lysC Staphylococcus epidermidis RP62A aspartate kinase YP_188541.1 981561 D 176279 CDS YP_188542.1 57866850 3241523 982834..983823 1 NC_002976.3 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 983823 asd 3241523 asd Staphylococcus epidermidis RP62A aspartate-semialdehyde dehydrogenase YP_188542.1 982834 D 176279 CDS YP_188543.1 57866851 3241524 983825..984709 1 NC_002976.3 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 984709 dapA 3241524 dapA Staphylococcus epidermidis RP62A dihydrodipicolinate synthase YP_188543.1 983825 D 176279 CDS YP_188544.1 57866852 3241525 984709..985431 1 NC_002976.3 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 985431 dapB 3241525 dapB Staphylococcus epidermidis RP62A dihydrodipicolinate reductase YP_188544.1 984709 D 176279 CDS YP_188545.1 57866853 3241526 985453..986175 1 NC_002976.3 identified by match to protein family HMM PF00132; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 986175 dapD 3241526 dapD Staphylococcus epidermidis RP62A 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_188545.1 985453 D 176279 CDS YP_188546.1 57866854 3241527 986332..987483 1 NC_002976.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 987483 3241527 SERP0968 Staphylococcus epidermidis RP62A amidohydrolase YP_188546.1 986332 D 176279 CDS YP_188547.1 57866855 3241528 987489..988562 1 NC_002976.3 identified by similarity to GP:11991216; match to protein family HMM PF00842; match to protein family HMM PF01168; alanine racemase 988562 3241528 SERP0969 Staphylococcus epidermidis RP62A alanine racemase YP_188547.1 987489 D 176279 CDS YP_188548.1 57866856 3241529 988563..989828 1 NC_002976.3 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 989828 lysA 3241529 lysA Staphylococcus epidermidis RP62A diaminopimelate decarboxylase YP_188548.1 988563 D 176279 CDS YP_188549.1 57866865 3242056 990377..990589 1 NC_002976.3 hypothetical protein 990589 3242056 SERP0971 Staphylococcus epidermidis RP62A hypothetical protein YP_188549.1 990377 D 176279 CDS YP_188550.1 57866866 3242057 complement(990579..990812) 1 NC_002976.3 identified by match to protein family HMM PF00313; CSD family cold shock protein 990812 3242057 SERP0972 Staphylococcus epidermidis RP62A CSD family cold shock protein YP_188550.1 990579 R 176279 CDS YP_188551.1 57866867 3242058 complement(990960..991268) 1 NC_002976.3 identified by similarity to OMNI:SA1438; hypothetical protein 991268 3242058 SERP0973 Staphylococcus epidermidis RP62A hypothetical protein YP_188551.1 990960 R 176279 CDS YP_188552.1 57866868 3242059 991427..991696 1 NC_002976.3 catalyzes the hydrolysis of acylphosphate; acylphosphatase 991696 3242059 SERP0974 Staphylococcus epidermidis RP62A acylphosphatase YP_188552.1 991427 D 176279 CDS YP_188553.1 57866869 3242060 991736..992362 1 NC_002976.3 identified by similarity to EGAD:19663; xpaC protein 992362 3242060 SERP0975 Staphylococcus epidermidis RP62A xpaC protein YP_188553.1 991736 D 176279 CDS YP_188554.1 57866870 3242061 992385..993515 1 NC_002976.3 identified by match to protein family HMM PF05816; tellurite resistance protein 993515 3242061 SERP0976 Staphylococcus epidermidis RP62A tellurite resistance protein YP_188554.1 992385 D 176279 CDS YP_188555.1 57866871 3242062 complement(993591..994934) 1 NC_002976.3 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid ABC transporter substrate-binding protein 994934 brnQ-1 3242062 brnQ-1 Staphylococcus epidermidis RP62A branched-chain amino acid ABC transporter substrate-binding protein YP_188555.1 993591 R 176279 CDS YP_188556.1 57866872 3242063 complement(995121..997010) 1 NC_002976.3 identified by similarity to OMNI:SA1444; hypothetical protein 997010 3242063 SERP0978 Staphylococcus epidermidis RP62A hypothetical protein YP_188556.1 995121 R 176279 CDS YP_188557.1 57866880 3242072 complement(997023..997814) 1 NC_002976.3 CbbQ/NirQ/NorQ/GpvN family protein 997814 3242072 SERP0979 Staphylococcus epidermidis RP62A CbbQ/NirQ/NorQ/GpvN family protein YP_188557.1 997023 R 176279 CDS YP_188558.1 57866881 3242073 complement(997992..998195) 1 NC_002976.3 identified by similarity to OMNI:SA1446; hypothetical protein 998195 3242073 SERP0980 Staphylococcus epidermidis RP62A hypothetical protein YP_188558.1 997992 R 176279 CDS YP_188559.1 57866882 3242074 complement(998220..999029) 1 NC_002976.3 identified by similarity to OMNI:SA1447; hypothetical protein 999029 3242074 SERP0981 Staphylococcus epidermidis RP62A hypothetical protein YP_188559.1 998220 R 176279 CDS YP_188560.1 57866883 3242075 999229..999402 1 NC_002976.3 hypothetical protein 999402 3242075 SERP0982 Staphylococcus epidermidis RP62A hypothetical protein YP_188560.1 999229 D 176279 CDS YP_188561.1 57866884 3242076 complement(999534..1000235) 1 NC_002976.3 hypothetical protein 1000235 3242076 SERP0983 Staphylococcus epidermidis RP62A hypothetical protein YP_188561.1 999534 R 176279 CDS YP_188562.1 57866885 3242077 complement(1000232..1001062) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1001062 3242077 SERP0984 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188562.1 1000232 R 176279 CDS YP_188563.1 57866886 3242078 complement(1001204..1002466) 1 NC_002976.3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1002466 sucB 3242078 sucB Staphylococcus epidermidis RP62A dihydrolipoamide succinyltransferase YP_188563.1 1001204 R 176279 CDS YP_188564.1 57866887 3242079 complement(1002485..1005289) 1 NC_002976.3 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1005289 sucA 3242079 sucA Staphylococcus epidermidis RP62A 2-oxoglutarate dehydrogenase E1 YP_188564.1 1002485 R 176279 CDS YP_188565.1 57866895 3242087 1005308..1005418 1 NC_002976.3 hypothetical protein 1005418 3242087 SERP0987 Staphylococcus epidermidis RP62A hypothetical protein YP_188565.1 1005308 D 176279 CDS YP_188566.1 57866896 3242088 complement(1005701..1007071) 1 NC_002976.3 identified by similarity to OMNI:SA1450; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase ArlS 1007071 arlS 3242088 arlS Staphylococcus epidermidis RP62A sensor histidine kinase ArlS YP_188566.1 1005701 R 176279 CDS YP_188567.1 57866897 3242089 complement(1007068..1007727) 1 NC_002976.3 identified by similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ArlR 1007727 arlR 3242089 arlR Staphylococcus epidermidis RP62A DNA-binding response regulator ArlR YP_188567.1 1007068 R 176279 CDS YP_188568.1 57866898 3242091 complement(1008383..1009396) 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 1009396 3242091 SERP0991 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188568.1 1008383 R 176279 CDS YP_188569.1 57866899 3242092 complement(1009969..1010583) 1 NC_002976.3 identified by match to protein family HMM PF01569; PAP2 family protein 1010583 3242092 SERP0992 Staphylococcus epidermidis RP62A PAP2 family protein YP_188569.1 1009969 R 176279 CDS YP_188570.1 57866900 3242009 complement(1010596..1011669) 1 NC_002976.3 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1011669 murG 3242009 murG Staphylococcus epidermidis RP62A undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_188570.1 1010596 R 176279 CDS YP_188571.1 57866910 3242019 complement(1011687..1012190) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1012190 3242019 SERP0994 Staphylococcus epidermidis RP62A acetyltransferase YP_188571.1 1011687 R 176279 CDS YP_188572.1 57866911 3242020 1012226..1012342 1 NC_002976.3 hypothetical protein 1012342 3242020 SERP0995 Staphylococcus epidermidis RP62A hypothetical protein YP_188572.1 1012226 D 176279 CDS YP_188573.1 57866912 3242021 complement(1012526..1014001) 1 NC_002976.3 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 1014001 3242021 SERP0996 Staphylococcus epidermidis RP62A carboxyl-terminal protease YP_188573.1 1012526 R 176279 CDS YP_188574.1 57866913 3242022 complement(1014346..1014570) 1 NC_002976.3 identified by similarity to OMNI:SA1456; hypothetical protein 1014570 3242022 SERP0997 Staphylococcus epidermidis RP62A hypothetical protein YP_188574.1 1014346 R 176279 CDS YP_188575.1 57866914 3242023 complement(1014570..1015070) 1 NC_002976.3 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component 1015070 3242023 SERP0998 Staphylococcus epidermidis RP62A PTS system, IIA component YP_188575.1 1014570 R 176279 CDS YP_188576.1 57866915 3242024 complement(1015083..1015511) 1 NC_002976.3 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1015511 msrB 3242024 msrB Staphylococcus epidermidis RP62A methionine sulfoxide reductase B YP_188576.1 1015083 R 176279 CDS YP_188577.1 57866916 3242025 complement(1015508..1016032) 1 NC_002976.3 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1016032 msrA-2 3242025 msrA-2 Staphylococcus epidermidis RP62A methionine sulfoxide reductase A YP_188577.1 1015508 R 176279 CDS YP_188578.1 57866917 3242026 complement(1016135..1016983) 1 NC_002976.3 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 1016983 3242026 SERP1001 Staphylococcus epidermidis RP62A DegV family protein YP_188578.1 1016135 R 176279 CDS YP_188579.1 57866925 3242034 complement(1016993..1017478) 1 NC_002976.3 identified by similarity to EGAD:43004; match to protein family HMM PF00186; dihydrofolate reductase 1017478 folA-1 3242034 folA-1 Staphylococcus epidermidis RP62A dihydrofolate reductase YP_188579.1 1016993 R 176279 CDS YP_188580.1 57866926 3242035 complement(1017520..1018476) 1 NC_002976.3 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1018476 thyA 3242035 thyA Staphylococcus epidermidis RP62A thymidylate synthase YP_188580.1 1017520 R 176279 CDS YP_188581.1 57866927 3242036 complement(1018790..1019452) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1019452 3242036 SERP1004 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188581.1 1018790 R 176279 CDS YP_188582.1 57866928 3242037 complement(1019468..1020517) 1 NC_002976.3 identified by match to protein family HMM PF02687; ABC transporter permease 1020517 3242037 SERP1005 Staphylococcus epidermidis RP62A ABC transporter permease YP_188582.1 1019468 R 176279 CDS YP_188583.1 57866929 3242038 complement(1020729..1021166) 1 NC_002976.3 identified by similarity to OMNI:SA1464; hypothetical protein 1021166 3242038 SERP1006 Staphylococcus epidermidis RP62A hypothetical protein YP_188583.1 1020729 R 176279 CDS YP_188584.1 57866930 3242039 complement(1021218..1021478) 1 NC_002976.3 identified by similarity to OMNI:SA1466; hypothetical protein 1021478 3242039 SERP1007 Staphylococcus epidermidis RP62A hypothetical protein YP_188584.1 1021218 R 176279 CDS YP_188585.1 57866931 3242040 complement(1021490..1021684) 1 NC_002976.3 identified by similarity to OMNI:SA1467; hypothetical protein 1021684 3242040 SERP1008 Staphylococcus epidermidis RP62A hypothetical protein YP_188585.1 1021490 R 176279 CDS YP_188586.1 57866932 3242041 1021935..1022639 1 NC_002976.3 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1022639 3242041 SERP1009 Staphylococcus epidermidis RP62A hypothetical protein YP_188586.1 1021935 D 176279 CDS YP_188587.1 57866933 3242042 1022964..1023359 1 NC_002976.3 identified by similarity to EGAD:17851; match to protein family HMM PF00075; cell wall enzyme EbsB 1023359 3242042 SERP1010 Staphylococcus epidermidis RP62A cell wall enzyme EbsB YP_188587.1 1022964 D 176279 CDS YP_188588.1 57867844 3240445 complement(1023531..1054142) 1 NC_002976.3 identified by similarity to OMNI:SA1472; match to protein family HMM PF01468; match to protein family HMM PF02370; match to protein family HMM PF02524; match to protein family HMM PF04508; match to protein family HMM PF04650; match to protein family HMM TIGR01168; cell wall associated fibronectin-binding protein 1054142 ebh 3240445 ebh Staphylococcus epidermidis RP62A cell wall associated fibronectin-binding protein YP_188588.1 1023531 R 176279 CDS YP_188589.1 57866934 3242043 complement(1054324..1055202) 1 NC_002976.3 identified by match to protein family HMM PF01367; match to protein family HMM PF02739; 5'-3' exonuclease 1055202 3242043 SERP1012 Staphylococcus epidermidis RP62A 5'-3' exonuclease YP_188589.1 1054324 R 176279 CDS YP_188590.1 57866935 3242044 complement(1055221..1058658) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1323; hypothetical protein 1058658 3242044 SERP1013 Staphylococcus epidermidis RP62A hypothetical protein YP_188590.1 1055221 R 176279 CDS YP_188591.1 57866936 3242045 complement(1059035..1059673) 1 NC_002976.3 identified by similarity to OMNI:NTL01XF01748; hypothetical protein 1059673 3242045 SERP1014 Staphylococcus epidermidis RP62A hypothetical protein YP_188591.1 1059035 R 176279 CDS YP_188592.1 57866937 3242046 complement(1059841..1060977) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1326; match to protein family HMM PF01170; hypothetical protein 1060977 3242046 SERP1015 Staphylococcus epidermidis RP62A hypothetical protein YP_188592.1 1059841 R 176279 CDS YP_188593.1 57866938 3242047 complement(1061620..1061958) 1 NC_002976.3 identified by similarity to OMNI:SA1484; match to protein family HMM PF05103; hypothetical protein 1061958 3242047 SERP1016 Staphylococcus epidermidis RP62A hypothetical protein YP_188593.1 1061620 R 176279 CDS YP_188594.1 57866939 3242048 complement(1061972..1062538) 1 NC_002976.3 identified by similarity to OMNI:SA1485; hypothetical protein 1062538 3242048 SERP1017 Staphylococcus epidermidis RP62A hypothetical protein YP_188594.1 1061972 R 176279 CDS YP_188595.1 57866940 3242049 complement(1062550..1062882) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1330; hypothetical protein 1062882 3242049 SERP1018 Staphylococcus epidermidis RP62A hypothetical protein YP_188595.1 1062550 R 176279 CDS YP_188596.1 57866949 3240684 1063223..1063852 1 NC_002976.3 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1063852 recU 3240684 recU Staphylococcus epidermidis RP62A Holliday junction-specific endonuclease YP_188596.1 1063223 D 176279 CDS YP_188597.1 57866950 3240685 1063849..1066080 1 NC_002976.3 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 2 1066080 pbp2 3240685 pbp2 Staphylococcus epidermidis RP62A penicillin-binding protein 2 YP_188597.1 1063849 D 176279 CDS YP_188598.1 57866951 3240686 complement(1066270..1066602) 1 NC_002976.3 identified by similarity to OMNI:SA1491; hypothetical protein 1066602 3240686 SERP1021 Staphylococcus epidermidis RP62A hypothetical protein YP_188598.1 1066270 R 176279 CDS YP_188599.1 57866952 3240687 complement(1066607..1067266) 1 NC_002976.3 identified by similarity to EGAD:24337; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1067266 nth 3240687 nth Staphylococcus epidermidis RP62A endonuclease III YP_188599.1 1066607 R 176279 CDS YP_188600.1 57866953 3240688 complement(1067256..1067942) 1 NC_002976.3 identified by similarity to EGAD:16577; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 1067942 3240688 SERP1023 Staphylococcus epidermidis RP62A DNA replication protein DnaD YP_188600.1 1067256 R 176279 CDS YP_188601.1 57866954 3240689 complement(1068035..1069327) 1 NC_002976.3 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1069327 asnC 3240689 asnC Staphylococcus epidermidis RP62A asparaginyl-tRNA synthetase YP_188601.1 1068035 R 176279 CDS YP_188602.1 57866955 3240690 complement(1069448..1072156) 1 NC_002976.3 identified by similarity to EGAD:37750; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG 1072156 3240690 SERP1025 Staphylococcus epidermidis RP62A DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG YP_188602.1 1069448 R 176279 CDS YP_188603.1 57866956 3240691 complement(1072181..1073152) 1 NC_002976.3 identified by similarity to EGAD:30996; match to protein family HMM PF01317; match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein 1073152 birA 3240691 birA Staphylococcus epidermidis RP62A birA bifunctional protein YP_188603.1 1072181 R 176279 CDS YP_188604.1 57866965 3240700 complement(1073139..1074341) 1 NC_002976.3 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1074341 papS 3240700 papS Staphylococcus epidermidis RP62A tRNA CCA-pyrophosphorylase YP_188604.1 1073139 R 176279 CDS YP_188605.1 57866966 3240701 complement(1074331..1075473) 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1075473 3240701 SERP1028 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_188605.1 1074331 R 176279 CDS YP_188606.1 57866967 3240702 complement(1075495..1075812) 1 NC_002976.3 identified by similarity to OMNI:SA1499; match to protein family HMM PF03819; hypothetical protein 1075812 3240702 SERP1029 Staphylococcus epidermidis RP62A hypothetical protein YP_188606.1 1075495 R 176279 CDS YP_188607.1 57866968 3240703 complement(1075993..1076688) 1 NC_002976.3 identified by similarity to OMNI:SA1500; match to protein family HMM PF04298; hypothetical protein 1076688 3240703 SERP1030 Staphylococcus epidermidis RP62A hypothetical protein YP_188607.1 1075993 R 176279 CDS YP_188608.1 57866969 3240704 complement(1076733..1077326) 1 NC_002976.3 identified by similarity to OMNI:SA1501; hypothetical protein 1077326 3240704 SERP1031 Staphylococcus epidermidis RP62A hypothetical protein YP_188608.1 1076733 R 176279 CDS YP_188609.1 57866970 3240705 complement(1077338..1077901) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1344; hypothetical protein 1077901 3240705 SERP1032 Staphylococcus epidermidis RP62A hypothetical protein YP_188609.1 1077338 R 176279 CDS YP_188610.1 57866971 3240706 complement(1077915..1079159) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1345; hypothetical protein 1079159 3240706 SERP1033 Staphylococcus epidermidis RP62A hypothetical protein YP_188610.1 1077915 R 176279 CDS YP_188611.1 57866972 3240707 complement(1079163..1080464) 1 NC_002976.3 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1080464 aroA 3240707 aroA Staphylococcus epidermidis RP62A 3-phosphoshikimate 1-carboxyvinyltransferase YP_188611.1 1079163 R 176279 CDS YP_188612.1 57866980 3240715 complement(1080474..1081538) 1 NC_002976.3 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1081538 aroB 3240715 aroB Staphylococcus epidermidis RP62A 3-dehydroquinate synthase YP_188612.1 1080474 R 176279 CDS YP_188613.1 57866981 3240716 complement(1081566..1082732) 1 NC_002976.3 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1082732 aroC 3240716 aroC Staphylococcus epidermidis RP62A chorismate synthase YP_188613.1 1081566 R 176279 CDS YP_188614.1 57866982 3240717 complement(1083213..1083662) 1 NC_002976.3 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1083662 ndk 3240717 ndk Staphylococcus epidermidis RP62A nucleoside diphosphate kinase YP_188614.1 1083213 R 176279 CDS YP_188615.1 57866983 3240718 complement(1083802..1084761) 1 NC_002976.3 identified by match to protein family HMM PF00348; polyprenyl synthetase 1084761 3240718 SERP1038 Staphylococcus epidermidis RP62A polyprenyl synthetase YP_188615.1 1083802 R 176279 CDS YP_188616.1 57866984 3240719 complement(1084763..1085488) 1 NC_002976.3 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1085488 ubiE 3240719 ubiE Staphylococcus epidermidis RP62A ubiquinone/menaquinone biosynthesis methyltransferase YP_188616.1 1084763 R 176279 CDS YP_188617.1 57866985 3242760 complement(1085481..1086059) 1 NC_002976.3 identified by similarity to OMNI:SA1512; hypothetical protein 1086059 3242760 SERP1040 Staphylococcus epidermidis RP62A hypothetical protein YP_188617.1 1085481 R 176279 CDS YP_188618.1 57866986 3242761 complement(1086529..1086801) 1 NC_002976.3 identified by similarity to EGAD:8587; match to protein family HMM PF00216; DNA-binding protein HU 1086801 hup 3242761 hup Staphylococcus epidermidis RP62A DNA-binding protein HU YP_188618.1 1086529 R 176279 CDS YP_188619.1 57866987 3242762 complement(1086972..1087970) 1 NC_002976.3 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1087970 gpsA 3242762 gpsA Staphylococcus epidermidis RP62A NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_188619.1 1086972 R 176279 CDS YP_188620.1 57867002 3242777 complement(1087991..1089301) 1 NC_002976.3 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1089301 engA 3242777 engA Staphylococcus epidermidis RP62A GTP-binding protein EngA YP_188620.1 1087991 R 176279 CDS YP_188621.1 57867003 3242778 complement(1089517..1090695) 1 NC_002976.3 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1090695 rpsA 3242778 rpsA Staphylococcus epidermidis RP62A 30S ribosomal protein S1 YP_188621.1 1089517 R 176279 CDS YP_188622.1 57867004 3242779 complement(1091179..1091826) 1 NC_002976.3 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1091826 cmk 3242779 cmk Staphylococcus epidermidis RP62A cytidylate kinase YP_188622.1 1091179 R 176279 CDS YP_188623.1 57866942 3242051 1091905..1092873 1 NC_002976.3 identified by similarity to EGAD:8552; match to protein family HMM PF00710; L-asparaginase 1092873 ansA 3242051 ansA Staphylococcus epidermidis RP62A L-asparaginase YP_188623.1 1091905 D 176279 CDS YP_188624.1 57866943 3242052 complement(1093085..1094071) 1 NC_002976.3 identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase family protein 1094071 3242052 SERP1047 Staphylococcus epidermidis RP62A pyridine nucleotide-disulfide oxidoreductase family protein YP_188624.1 1093085 R 176279 CDS YP_188625.1 57866944 3240679 complement(1094204..1095586) 1 NC_002976.3 identified by match to protein family HMM PF01476; elastin binding protein 1095586 3240679 SERP1048 Staphylococcus epidermidis RP62A elastin binding protein YP_188625.1 1094204 R 176279 CDS YP_188626.1 57866945 3240680 complement(1095743..1097122) 1 NC_002976.3 identified by similarity to EGAD:37724; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ 1097122 recQ-2 3240680 recQ-2 Staphylococcus epidermidis RP62A ATP-dependent DNA helicase RecQ YP_188626.1 1095743 R 176279 CDS YP_188627.1 57866946 3240681 complement(1097109..1098071) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1365; hypothetical protein 1098071 3240681 SERP1050 Staphylococcus epidermidis RP62A hypothetical protein YP_188627.1 1097109 R 176279 CDS YP_188628.1 57866947 3240682 1098180..1098428 1 NC_002976.3 identified by similarity to SP:P50727; ferredoxin 1098428 fer 3240682 fer Staphylococcus epidermidis RP62A ferredoxin YP_188628.1 1098180 D 176279 CDS YP_188629.1 57866948 3240683 complement(1098520..1098624) 1 NC_002976.3 hypothetical protein 1098624 3240683 SERP1052 Staphylococcus epidermidis RP62A hypothetical protein YP_188629.1 1098520 R 176279 CDS YP_188630.1 57866957 3240692 complement(1098833..1099372) 1 NC_002976.3 identified by similarity to OMNI:SA1526; hypothetical protein 1099372 3240692 SERP1053 Staphylococcus epidermidis RP62A hypothetical protein YP_188630.1 1098833 R 176279 CDS YP_188631.1 57866958 3240693 complement(1099964..1101733) 1 NC_002976.3 identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SrrB 1101733 srrB 3240693 srrB Staphylococcus epidermidis RP62A sensor histidine kinase SrrB YP_188631.1 1099964 R 176279 CDS YP_188632.1 57866959 3240694 complement(1101714..1102439) 1 NC_002976.3 identified by similarity to EGAD:14175; similarity to OMNI:SA1535; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SrrA 1102439 srrA 3240694 srrA Staphylococcus epidermidis RP62A DNA-binding response regulator SrrA YP_188632.1 1101714 R 176279 CDS YP_188633.1 57866960 3240695 complement(1102573..1103310) 1 NC_002976.3 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase 1103310 rluB 3240695 rluB Staphylococcus epidermidis RP62A pseudouridine synthase YP_188633.1 1102573 R 176279 CDS YP_188634.1 57866961 3240696 complement(1103303..1103845) 1 NC_002976.3 identified by similarity to OMNI:SA1537; match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 1103845 scpB 3240696 scpB Staphylococcus epidermidis RP62A segregation and condensation protein B YP_188634.1 1103303 R 176279 CDS YP_188635.1 57866962 3240697 complement(1103838..1104569) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1377; match to protein family HMM PF02616; segregation and condensation protein A 1104569 scpA 3240697 scpA Staphylococcus epidermidis RP62A segregation and condensation protein A YP_188635.1 1103838 R 176279 CDS YP_188636.1 57866963 3240698 1104667..1105191 1 NC_002976.3 identified by similarity to OMNI:SA1539; match to protein family HMM PF03745; hypothetical protein 1105191 3240698 SERP1059 Staphylococcus epidermidis RP62A hypothetical protein YP_188636.1 1104667 D 176279 CDS YP_188637.1 57866964 3240699 complement(1105244..1106131) 1 NC_002976.3 identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 1106131 xerD 3240699 xerD Staphylococcus epidermidis RP62A tyrosine recombinase XerD YP_188637.1 1105244 R 176279 CDS YP_188638.1 57866973 3240708 complement(1106174..1106623) 1 NC_002976.3 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1106623 3240708 SERP1061 Staphylococcus epidermidis RP62A FUR family transcriptional regulator YP_188638.1 1106174 R 176279 CDS YP_188639.1 57866974 3240709 complement(1106728..1107270) 1 NC_002976.3 identified by match to protein family HMM PF00293; MutT/nudix family protein 1107270 3240709 SERP1062 Staphylococcus epidermidis RP62A MutT/nudix family protein YP_188639.1 1106728 R 176279 CDS YP_188640.1 57866975 3240710 1107353..1108261 1 NC_002976.3 identified by match to protein family HMM PF00248; aldo/keto reductase 1108261 3240710 SERP1063 Staphylococcus epidermidis RP62A aldo/keto reductase YP_188640.1 1107353 D 176279 CDS YP_188641.1 57866976 3240711 complement(1108484..1109242) 1 NC_002976.3 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1109242 3240711 SERP1064 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_188641.1 1108484 R 176279 CDS YP_188642.1 57866977 3240712 1109403..1110218 1 NC_002976.3 identified by match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1110218 proC 3240712 proC Staphylococcus epidermidis RP62A pyrroline-5-carboxylate reductase YP_188642.1 1109403 D 176279 CDS YP_188643.1 57866978 3240713 complement(1110268..1111188) 1 NC_002976.3 identified by match to protein family HMM PF00753; AtsA/ElaC family protein 1111188 3240713 SERP1066 Staphylococcus epidermidis RP62A AtsA/ElaC family protein YP_188643.1 1110268 R 176279 CDS YP_188644.1 57866979 3240714 1111612..1113096 1 NC_002976.3 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1113096 zwf-2 3240714 zwf-2 Staphylococcus epidermidis RP62A glucose-6-phosphate 1-dehydrogenase YP_188644.1 1111612 D 176279 CDS YP_188645.1 57866988 3242763 1113125..1113220 1 NC_002976.3 hypothetical protein 1113220 3242763 SERP1068 Staphylococcus epidermidis RP62A hypothetical protein YP_188645.1 1113125 D 176279 CDS YP_188646.1 57866989 3242764 1113297..1114178 1 NC_002976.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1114178 3242764 SERP1069 Staphylococcus epidermidis RP62A AraC family transcriptional regulator YP_188646.1 1113297 D 176279 CDS YP_188647.1 57866990 3242765 complement(1114441..1116096) 1 NC_002976.3 identified by match to protein family HMM PF00128; alpha-glucosidase 1116096 malA 3242765 malA Staphylococcus epidermidis RP62A alpha-glucosidase YP_188647.1 1114441 R 176279 CDS YP_188648.1 57866991 3242766 complement(1116266..1117672) 1 NC_002976.3 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1117672 gnd 3242766 gnd Staphylococcus epidermidis RP62A 6-phosphogluconate dehydrogenase YP_188648.1 1116266 R 176279 CDS YP_188649.1 57866992 3242767 complement(1117752..1118876) 1 NC_002976.3 identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM TIGR01883; peptidase T-like protein 1118876 3242767 SERP1072 Staphylococcus epidermidis RP62A peptidase T-like protein YP_188649.1 1117752 R 176279 CDS YP_188650.1 57866993 3242768 1119107..1119202 1 NC_002976.3 hypothetical protein 1119202 3242768 SERP1073 Staphylococcus epidermidis RP62A hypothetical protein YP_188650.1 1119107 D 176279 CDS YP_188651.1 57866994 3242769 complement(1119254..1120231) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1395; hypothetical protein 1120231 3242769 SERP1074 Staphylococcus epidermidis RP62A hypothetical protein YP_188651.1 1119254 R 176279 CDS YP_188652.1 57866995 3242770 complement(1120244..1120681) 1 NC_002976.3 identified by similarity to OMNI:SA1558; hypothetical protein 1120681 3242770 SERP1075 Staphylococcus epidermidis RP62A hypothetical protein YP_188652.1 1120244 R 176279 CDS YP_188653.1 57866996 3242771 complement(1120886..1122205) 1 NC_002976.3 identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxoisovalerate dehydrogenase E2 1122205 3242771 SERP1076 Staphylococcus epidermidis RP62A 2-oxoisovalerate dehydrogenase E2 YP_188653.1 1120886 R 176279 CDS YP_188654.1 57866997 3242772 complement(1122218..1123201) 1 NC_002976.3 identified by similarity to EGAD:21712; match to protein family HMM PF02779; match to protein family HMM PF02780; 2-oxoisovalerate dehydrogenase E1 1123201 3242772 SERP1077 Staphylococcus epidermidis RP62A 2-oxoisovalerate dehydrogenase E1 YP_188654.1 1122218 R 176279 CDS YP_188655.1 57866998 3242773 complement(1123194..1124192) 1 NC_002976.3 identified by similarity to EGAD:21637; match to protein family HMM PF00676; 2-oxoisovalerate dehydrogenase E1 1124192 3242773 SERP1078 Staphylococcus epidermidis RP62A 2-oxoisovalerate dehydrogenase E1 YP_188655.1 1123194 R 176279 CDS YP_188656.1 57866999 3242774 complement(1124207..1125628) 1 NC_002976.3 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; 2-oxoisovalerate dehydrogenase E3 1125628 lpdA 3242774 lpdA Staphylococcus epidermidis RP62A 2-oxoisovalerate dehydrogenase E3 YP_188656.1 1124207 R 176279 CDS YP_188657.1 57867000 3242775 complement(1125888..1127564) 1 NC_002976.3 identified by similarity to EGAD:12400; match to protein family HMM TIGR00634; DNA repair protein RecN 1127564 recN 3242775 recN Staphylococcus epidermidis RP62A DNA repair protein RecN YP_188657.1 1125888 R 176279 CDS YP_188658.1 57867001 3242776 complement(1127580..1128032) 1 NC_002976.3 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 1128032 argR 3242776 argR Staphylococcus epidermidis RP62A arginine repressor ArgR YP_188658.1 1127580 R 176279 CDS YP_188659.1 57867011 3242786 complement(1128347..1129228) 1 NC_002976.3 identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase 1129228 ispA 3242786 ispA Staphylococcus epidermidis RP62A geranyltranstransferase YP_188659.1 1128347 R 176279 CDS YP_188660.1 57867012 3242787 complement(1129206..1129436) 1 NC_002976.3 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1129436 xseB 3242787 xseB Staphylococcus epidermidis RP62A exodeoxyribonuclease VII small subunit YP_188660.1 1129206 R 176279 CDS YP_188661.1 57867013 3242788 complement(1129429..1130766) 1 NC_002976.3 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1130766 xseA 3242788 xseA Staphylococcus epidermidis RP62A exodeoxyribonuclease VII large subunit YP_188661.1 1129429 R 176279 CDS YP_188662.1 57867014 3242789 complement(1130781..1131170) 1 NC_002976.3 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1131170 nusB 3242789 nusB Staphylococcus epidermidis RP62A transcription antitermination protein NusB YP_188662.1 1130781 R 176279 CDS YP_188663.1 57867015 3242790 complement(1131246..1131608) 1 NC_002976.3 identified by similarity to OMNI:SA1570; match to protein family HMM PF03780; hypothetical protein 1131608 3242790 SERP1086 Staphylococcus epidermidis RP62A hypothetical protein YP_188663.1 1131246 R 176279 CDS YP_188664.1 57867016 3242791 complement(1131620..1132978) 1 NC_002976.3 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1132978 accC 3242791 accC Staphylococcus epidermidis RP62A acetyl-CoA carboxylase biotin carboxylase subunit YP_188664.1 1131620 R 176279 CDS YP_188665.1 57867017 3242792 complement(1132978..1133445) 1 NC_002976.3 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1133445 accB 3242792 accB Staphylococcus epidermidis RP62A acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_188665.1 1132978 R 176279 CDS YP_188666.1 57867027 3242103 complement(1133703..1134830) 1 NC_002976.3 identified by similarity to EGAD:10055; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 1134830 argD 3242103 argD Staphylococcus epidermidis RP62A acetylornithine aminotransferase YP_188666.1 1133703 R 176279 CDS YP_188667.1 57867028 3242104 complement(1134833..1135570) 1 NC_002976.3 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1135570 argB 3242104 argB Staphylococcus epidermidis RP62A acetylglutamate kinase YP_188667.1 1134833 R 176279 CDS YP_188668.1 57867029 3242105 complement(1135580..1136773) 1 NC_002976.3 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 1136773 argJ 3242105 argJ Staphylococcus epidermidis RP62A bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_188668.1 1135580 R 176279 CDS YP_188669.1 57867030 3242106 complement(1136791..1137816) 1 NC_002976.3 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1137816 argC 3242106 argC Staphylococcus epidermidis RP62A N-acetyl-gamma-glutamyl-phosphate reductase YP_188669.1 1136791 R 176279 CDS YP_188670.1 57867031 3242107 complement(1137966..1138523) 1 NC_002976.3 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1138523 efp 3242107 efp Staphylococcus epidermidis RP62A elongation factor P YP_188670.1 1137966 R 176279 CDS YP_188671.1 57867032 3242108 complement(1138550..1139611) 1 NC_002976.3 identified by similarity to GP:3372642; match to protein family HMM PF00557; proline dipeptidase 1139611 3242108 SERP1094 Staphylococcus epidermidis RP62A proline dipeptidase YP_188671.1 1138550 R 176279 CDS YP_188672.1 57867033 3242109 1139714..1140292 1 NC_002976.3 lipoprotein 1140292 3242109 SERP1095 Staphylococcus epidermidis RP62A lipoprotein YP_188672.1 1139714 D 176279 CDS YP_188673.1 57867042 3240945 1140306..1140524 1 NC_002976.3 identified by similarity to OMNI:SA1590; hypothetical protein 1140524 3240945 SERP1096 Staphylococcus epidermidis RP62A hypothetical protein YP_188673.1 1140306 D 176279 CDS YP_188674.1 57867043 3240946 complement(1140565..1141395) 1 NC_002976.3 identified by match to protein family HMM PF02539; match to protein family HMM PF03099; lipoate-protein ligase A 1141395 3240946 SERP1097 Staphylococcus epidermidis RP62A lipoate-protein ligase A YP_188674.1 1140565 R 176279 CDS YP_188675.1 57867044 3240947 1141555..1141941 1 NC_002976.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1141941 3240947 SERP1098 Staphylococcus epidermidis RP62A rhodanese-like domain-containing protein YP_188675.1 1141555 D 176279 CDS YP_188676.1 57867045 3240949 complement(1142833..1144341) 1 NC_002976.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1144341 3240949 SERP1100 Staphylococcus epidermidis RP62A glycine dehydrogenase subunit 2 YP_188676.1 1142833 R 176279 CDS YP_188677.1 57867046 3240950 complement(1144334..1145680) 1 NC_002976.3 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1145680 3240950 SERP1101 Staphylococcus epidermidis RP62A glycine dehydrogenase subunit 1 YP_188677.1 1144334 R 176279 CDS YP_188678.1 57867047 3240951 complement(1145700..1146791) 1 NC_002976.3 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1146791 gcvT 3240951 gcvT Staphylococcus epidermidis RP62A glycine cleavage system aminomethyltransferase T YP_188678.1 1145700 R 176279 CDS YP_188679.1 57867056 3240960 complement(1147009..1147506) 1 NC_002976.3 identified by similarity to EGAD:29699; match to protein family HMM PF01202; shikimate kinase 1147506 aroK 3240960 aroK Staphylococcus epidermidis RP62A shikimate kinase YP_188679.1 1147009 R 176279 CDS YP_188680.1 57867057 3240961 complement(1147686..1148177) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1420; hypothetical protein 1148177 3240961 SERP1104 Staphylococcus epidermidis RP62A hypothetical protein YP_188680.1 1147686 R 176279 CDS YP_188681.1 57867058 3240962 complement(1148101..1148394) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1421; hypothetical protein 1148394 3240962 SERP1105 Staphylococcus epidermidis RP62A hypothetical protein YP_188681.1 1148101 R 176279 CDS YP_188682.1 57867059 3240963 complement(1148381..1148830) 1 NC_002976.3 identified by similarity to OMNI:SA1598; hypothetical protein 1148830 3240963 SERP1106 Staphylococcus epidermidis RP62A hypothetical protein YP_188682.1 1148381 R 176279 CDS YP_188683.1 57867060 3240964 complement(1148808..1149125) 1 NC_002976.3 identified by similarity to EGAD:18290; competence protein ComG 1149125 comGC 3240964 comGC Staphylococcus epidermidis RP62A competence protein ComG YP_188683.1 1148808 R 176279 CDS YP_188684.1 57867061 3240965 complement(1149143..1150210) 1 NC_002976.3 identified by similarity to EGAD:21818; match to protein family HMM PF00482; competence protein ComG 1150210 3240965 SERP1108 Staphylococcus epidermidis RP62A competence protein ComG YP_188684.1 1149143 R 176279 CDS YP_188685.1 57867062 3240966 complement(1150182..1151165) 1 NC_002976.3 identified by similarity to EGAD:12231; match to protein family HMM PF00437; competence protein ComGA 1151165 3240966 SERP1109 Staphylococcus epidermidis RP62A competence protein ComGA YP_188685.1 1150182 R 176279 CDS YP_188686.1 57867063 3240967 complement(1151213..1151836) 1 NC_002976.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1151836 3240967 SERP1110 Staphylococcus epidermidis RP62A metallo-beta-lactamase YP_188686.1 1151213 R 176279 CDS YP_188687.1 57867071 3242885 complement(1151836..1152162) 1 NC_002976.3 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein 1152162 3242885 SERP1111 Staphylococcus epidermidis RP62A hypothetical protein YP_188687.1 1151836 R 176279 CDS YP_188688.1 57867072 3242886 complement(1152162..1153148) 1 NC_002976.3 identified by similarity to EGAD:33102; match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase 1153148 glk 3242886 glk Staphylococcus epidermidis RP62A glucokinase YP_188688.1 1152162 R 176279 CDS YP_188689.1 57867073 3242887 complement(1153148..1153348) 1 NC_002976.3 identified by similarity to OMNI:SA1605; hypothetical protein 1153348 3242887 SERP1113 Staphylococcus epidermidis RP62A hypothetical protein YP_188689.1 1153148 R 176279 CDS YP_188690.1 57867074 3242888 complement(1153332..1154792) 1 NC_002976.3 identified by match to protein family HMM PF01694; rhomboid family protein 1154792 3242888 SERP1114 Staphylococcus epidermidis RP62A rhomboid family protein YP_188690.1 1153332 R 176279 CDS YP_188691.1 57867075 3242889 complement(1154793..1155344) 1 NC_002976.3 identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 1155344 3242889 SERP1115 Staphylococcus epidermidis RP62A 5-formyltetrahydrofolate cyclo-ligase YP_188691.1 1154793 R 176279 CDS YP_188692.1 57867076 3242890 complement(1155527..1155676) 1 NC_002976.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1155676 rpmG 3242890 rpmG Staphylococcus epidermidis RP62A 50S ribosomal protein L33 YP_188692.1 1155527 R 176279 CDS YP_188693.1 57867077 3242891 complement(1155781..1157871) 1 NC_002976.3 identified by similarity to OMNI:SA1609; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 1157871 pbp3 3242891 pbp3 Staphylococcus epidermidis RP62A penicillin-binding protein 3 YP_188693.1 1155781 R 176279 CDS YP_188694.1 57867078 3242892 1157913..1158014 1 NC_002976.3 hypothetical protein 1158014 3242892 SERP1118 Staphylococcus epidermidis RP62A hypothetical protein YP_188694.1 1157913 D 176279 CDS YP_188695.1 57867086 3242900 complement(1158272..1158871) 1 NC_002976.3 identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 1158871 sodA 3242900 sodA Staphylococcus epidermidis RP62A superoxide dismutase YP_188695.1 1158272 R 176279 CDS YP_188696.1 57867087 3242901 complement(1159276..1159695) 1 NC_002976.3 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1159695 3242901 SERP1120 Staphylococcus epidermidis RP62A FUR family transcriptional regulator YP_188696.1 1159276 R 176279 CDS YP_188697.1 57867088 3242902 complement(1159698..1160546) 1 NC_002976.3 identified by match to protein family HMM PF00950; ABC transporter permease 1160546 3242902 SERP1121 Staphylococcus epidermidis RP62A ABC transporter permease YP_188697.1 1159698 R 176279 CDS YP_188698.1 57867089 3242903 complement(1160580..1161362) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1161362 3242903 SERP1122 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188698.1 1160580 R 176279 CDS YP_188699.1 57867090 3242904 complement(1161580..1162470) 1 NC_002976.3 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1162470 nfo 3242904 nfo Staphylococcus epidermidis RP62A endonuclease IV YP_188699.1 1161580 R 176279 CDS YP_188700.1 57867091 3242905 complement(1162480..1163826) 1 NC_002976.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase 1163826 3242905 SERP1124 Staphylococcus epidermidis RP62A DEAD-box ATP dependent DNA helicase YP_188700.1 1162480 R 176279 CDS YP_188701.1 57867092 3242906 complement(1163861..1164961) 1 NC_002976.3 identified by similarity to OMNI:SA1616; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1164961 3242906 SERP1125 Staphylococcus epidermidis RP62A hypothetical protein YP_188701.1 1163861 R 176279 CDS YP_188702.1 57867093 3242907 complement(1164951..1165640) 1 NC_002976.3 identified by similarity to OMNI:SA1617; match to protein family HMM PF04816; hypothetical protein 1165640 3242907 SERP1126 Staphylococcus epidermidis RP62A hypothetical protein YP_188702.1 1164951 R 176279 CDS YP_188703.1 57867102 3242916 complement(1165795..1166901) 1 NC_002976.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1166901 rpoD 3242916 rpoD Staphylococcus epidermidis RP62A RNA polymerase sigma factor RpoD YP_188703.1 1165795 R 176279 CDS YP_188704.1 57867103 3242917 complement(1167172..1168968) 1 NC_002976.3 identified by similarity to EGAD:15135; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 1168968 dnaG 3242917 dnaG Staphylococcus epidermidis RP62A DNA primase YP_188704.1 1167172 R 176279 CDS YP_188705.1 57867104 3242918 complement(1169142..1169960) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1444; match to protein family HMM PF03618; hypothetical protein 1169960 3242918 SERP1129 Staphylococcus epidermidis RP62A hypothetical protein YP_188705.1 1169142 R 176279 CDS YP_188706.1 57867005 3242780 complement(1169972..1170595) 1 NC_002976.3 identified by match to protein family HMM PF00571; CBS domain-containing protein 1170595 3242780 SERP1130 Staphylococcus epidermidis RP62A CBS domain-containing protein YP_188706.1 1169972 R 176279 CDS YP_188707.1 57867006 3242781 1170668..1170766 1 NC_002976.3 hypothetical protein 1170766 3242781 SERP1131 Staphylococcus epidermidis RP62A hypothetical protein YP_188707.1 1170668 D 176279 CDS YP_188708.1 57867007 3242782 1170931..1172322 1 NC_002976.3 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1172322 glyS 3242782 glyS Staphylococcus epidermidis RP62A glycyl-tRNA synthetase YP_188708.1 1170931 D 176279 CDS YP_188709.1 57867008 3242783 complement(1172452..1173213) 1 NC_002976.3 identified by match to protein family HMM PF02565; RecO family DNA repair protein 1173213 3242783 SERP1133 Staphylococcus epidermidis RP62A RecO family DNA repair protein YP_188709.1 1172452 R 176279 CDS YP_188710.1 57867009 3242784 complement(1173239..1174138) 1 NC_002976.3 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1174138 era 3242784 era Staphylococcus epidermidis RP62A GTP-binding protein Era YP_188710.1 1173239 R 176279 CDS YP_188711.1 57867010 3242785 complement(1174138..1174542) 1 NC_002976.3 identified by similarity to EGAD:8728; match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 1174542 cdd 3242785 cdd Staphylococcus epidermidis RP62A cytidine deaminase YP_188711.1 1174138 R 176279 CDS YP_188712.1 57867018 3242793 complement(1174542..1174898) 1 NC_002976.3 identified by similarity to EGAD:11045; match to protein family HMM PF01219; diacylglycerol kinase 1174898 dgkA 3242793 dgkA Staphylococcus epidermidis RP62A diacylglycerol kinase YP_188712.1 1174542 R 176279 CDS YP_188713.1 57867019 3242794 complement(1174900..1175367) 1 NC_002976.3 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1175367 3242794 SERP1137 Staphylococcus epidermidis RP62A hypothetical protein YP_188713.1 1174900 R 176279 CDS YP_188714.1 57867020 3242795 complement(1175368..1176315) 1 NC_002976.3 identified by match to protein family HMM PF02562; PhoH family protein 1176315 3242795 SERP1138 Staphylococcus epidermidis RP62A PhoH family protein YP_188714.1 1175368 R 176279 CDS YP_188715.1 57867021 3242796 complement(1176601..1177284) 1 NC_002976.3 identified by similarity to OMNI:SA1629; hypothetical protein 1177284 3242796 SERP1139 Staphylococcus epidermidis RP62A hypothetical protein YP_188715.1 1176601 R 176279 CDS YP_188716.1 57867022 3242797 complement(1177300..1178289) 1 NC_002976.3 identified by similarity to OMNI:SA1630; hypothetical protein 1178289 3242797 SERP1140 Staphylococcus epidermidis RP62A hypothetical protein YP_188716.1 1177300 R 176279 CDS YP_188717.1 57867023 3242798 complement(1178304..1179014) 1 NC_002976.3 identified by similarity to OMNI:SA1631; hypothetical protein 1179014 3242798 SERP1141 Staphylococcus epidermidis RP62A hypothetical protein YP_188717.1 1178304 R 176279 CDS YP_188718.1 57867024 3242799 complement(1179528..1179638) 1 NC_002976.3 hypothetical protein 1179638 3242799 SERP1142 Staphylococcus epidermidis RP62A hypothetical protein YP_188718.1 1179528 R 176279 CDS YP_188719.1 57867025 3242800 complement(1179860..1180036) 1 NC_002976.3 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1180036 rpsU 3242800 rpsU Staphylococcus epidermidis RP62A 30S ribosomal protein S21 YP_188719.1 1179860 R 176279 CDS YP_188720.1 57867026 3242801 complement(1180162..1181508) 1 NC_002976.3 identified by similarity to OMNI:SA1633; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 1181508 3242801 SERP1144 Staphylococcus epidermidis RP62A hypothetical protein YP_188720.1 1180162 R 176279 CDS YP_188721.1 57867034 3242110 complement(1181514..1182275) 1 NC_002976.3 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1182275 3242110 SERP1145 Staphylococcus epidermidis RP62A 16S ribosomal RNA methyltransferase RsmE YP_188721.1 1181514 R 176279 CDS YP_188722.1 57867035 3242111 complement(1182268..1183206) 1 NC_002976.3 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1183206 prmA 3242111 prmA Staphylococcus epidermidis RP62A ribosomal protein L11 methyltransferase YP_188722.1 1182268 R 176279 CDS YP_188723.1 57867036 3240939 complement(1183210..1184331) 1 NC_002976.3 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 1184331 dnaJ 3240939 dnaJ Staphylococcus epidermidis RP62A molecular chaperone DnaJ YP_188723.1 1183210 R 176279 CDS YP_188724.1 57867037 3240940 complement(1184476..1186305) 1 NC_002976.3 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1186305 dnaK 3240940 dnaK Staphylococcus epidermidis RP62A molecular chaperone DnaK YP_188724.1 1184476 R 176279 CDS YP_188725.1 57867038 3240941 complement(1186361..1186993) 1 NC_002976.3 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1186993 grpE 3240941 grpE Staphylococcus epidermidis RP62A heat shock protein GrpE YP_188725.1 1186361 R 176279 CDS YP_188726.1 57867039 3240942 complement(1187022..1187999) 1 NC_002976.3 identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA 1187999 hrcA 3240942 hrcA Staphylococcus epidermidis RP62A heat-inducible transcription repressor HrcA YP_188726.1 1187022 R 176279 CDS YP_188727.1 57867040 3240943 complement(1188099..1189223) 1 NC_002976.3 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1189223 3240943 SERP1151 Staphylococcus epidermidis RP62A coproporphyrinogen III oxidase YP_188727.1 1188099 R 176279 CDS YP_188728.1 57867041 3240944 complement(1189342..1191165) 1 NC_002976.3 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1191165 3240944 SERP1152 Staphylococcus epidermidis RP62A GTP-binding protein LepA YP_188728.1 1189342 R 176279 CDS YP_188729.1 57867048 3240952 1191458..1191709 1 NC_002976.3 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1191709 rpsT 3240952 rpsT Staphylococcus epidermidis RP62A 30S ribosomal protein S20 YP_188729.1 1191458 D 176279 CDS YP_188730.1 57867049 3240953 complement(1191827..1192801) 1 NC_002976.3 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1192801 holA 3240953 holA Staphylococcus epidermidis RP62A DNA polymerase III subunit delta YP_188730.1 1191827 R 176279 CDS YP_188731.1 57867050 3240954 complement(1192846..1195062) 1 NC_002976.3 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; competence protein ComEC 1195062 3240954 SERP1155 Staphylococcus epidermidis RP62A competence protein ComEC YP_188731.1 1192846 R 176279 CDS YP_188732.1 57867051 3240955 complement(1195066..1195527) 1 NC_002976.3 identified by similarity to EGAD:23914; match to protein family HMM PF00383; competence protein ComE 1195527 3240955 SERP1156 Staphylococcus epidermidis RP62A competence protein ComE YP_188732.1 1195066 R 176279 CDS YP_188733.1 57867052 3240956 complement(1195607..1196281) 1 NC_002976.3 identified by similarity to OMNI:NTL01LL1813; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComE 1196281 3240956 SERP1157 Staphylococcus epidermidis RP62A competence protein ComE YP_188733.1 1195607 R 176279 CDS YP_188734.1 57867053 3240957 complement(1196340..1197059) 1 NC_002976.3 identified by similarity to OMNI:SA1647; hypothetical protein 1197059 3240957 SERP1158 Staphylococcus epidermidis RP62A hypothetical protein YP_188734.1 1196340 R 176279 CDS YP_188735.1 57867054 3240958 complement(1197062..1197415) 1 NC_002976.3 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-related protein 1197415 3240958 SERP1159 Staphylococcus epidermidis RP62A iojap-related protein YP_188735.1 1197062 R 176279 CDS YP_188736.1 57867055 3240959 complement(1197416..1198000) 1 NC_002976.3 identified by similarity to OMNI:SA1649; match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein 1198000 3240959 SERP1160 Staphylococcus epidermidis RP62A hypothetical protein YP_188736.1 1197416 R 176279 CDS YP_188737.1 57867064 3240968 complement(1197987..1198562) 1 NC_002976.3 identified by similarity to OMNI:SA1650; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1198562 nadD 3240968 nadD Staphylococcus epidermidis RP62A nicotinate (nicotinamide) nucleotide adenylyltransferase YP_188737.1 1197987 R 176279 CDS YP_188738.1 57867065 3240387 complement(1198559..1198852) 1 NC_002976.3 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 1198852 3240387 SERP1162 Staphylococcus epidermidis RP62A hypothetical protein YP_188738.1 1198559 R 176279 CDS YP_188739.1 57867066 3240969 complement(1198852..1199661) 1 NC_002976.3 identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1199661 aroE 3240969 aroE Staphylococcus epidermidis RP62A shikimate 5-dehydrogenase YP_188739.1 1198852 R 176279 CDS YP_188740.1 57867067 3240970 complement(1199677..1200777) 1 NC_002976.3 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 1200777 3240970 SERP1164 Staphylococcus epidermidis RP62A GTP-binding protein YqeH YP_188740.1 1199677 R 176279 CDS YP_188741.1 57867068 3242882 complement(1200778..1201305) 1 NC_002976.3 identified by similarity to OMNI:SA1654; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase 1201305 3242882 SERP1165 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188741.1 1200778 R 176279 CDS YP_188742.1 57867069 3242883 complement(1201325..1202011) 1 NC_002976.3 identified by similarity to EGAD:16140; match to protein family HMM PF01048; match to protein family HMM TIGR01704; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1202011 mtn 3242883 mtn Staphylococcus epidermidis RP62A 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_188742.1 1201325 R 176279 CDS YP_188743.1 57867070 3242884 complement(1202210..1203454) 1 NC_002976.3 identified by similarity to OMNI:SA1659; hypothetical protein 1203454 3242884 SERP1167 Staphylococcus epidermidis RP62A hypothetical protein YP_188743.1 1202210 R 176279 CDS YP_188744.1 57867079 3242893 complement(1203466..1204224) 1 NC_002976.3 identified by similarity to OMNI:SA1660; match to protein family HMM PF03746; LamB/YcsF family protein 1204224 3242893 SERP1168 Staphylococcus epidermidis RP62A LamB/YcsF family protein YP_188744.1 1203466 R 176279 CDS YP_188745.1 57867080 3242894 complement(1204221..1205582) 1 NC_002976.3 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase 1205582 3242894 SERP1169 Staphylococcus epidermidis RP62A acetyl-CoA carboxylase, biotin carboxylase YP_188745.1 1204221 R 176279 CDS YP_188746.1 57867081 3242895 complement(1205593..1206033) 1 NC_002976.3 identified by match to protein family HMM PF00364; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1206033 3242895 SERP1170 Staphylococcus epidermidis RP62A acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_188746.1 1205593 R 176279 CDS YP_188747.1 57867082 3242896 complement(1206034..1207038) 1 NC_002976.3 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; urea amidolyase 1207038 3242896 SERP1171 Staphylococcus epidermidis RP62A urea amidolyase YP_188747.1 1206034 R 176279 CDS YP_188748.1 57867083 3242897 complement(1207028..1207759) 1 NC_002976.3 identified by similarity to OMNI:SA1664; match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 1207759 3242897 SERP1172 Staphylococcus epidermidis RP62A hypothetical protein YP_188748.1 1207028 R 176279 CDS YP_188749.1 57867084 3242898 complement(1208279..1208761) 1 NC_002976.3 identified by similarity to EGAD:14951; match to protein family HMM PF01797; IS200 family transposase 1208761 3242898 SERP1173 Staphylococcus epidermidis RP62A IS200 family transposase YP_188749.1 1208279 R 176279 CDS YP_188750.1 57867085 3242899 complement(1209059..1209535) 1 NC_002976.3 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1209535 greA 3242899 greA Staphylococcus epidermidis RP62A transcription elongation factor GreA YP_188750.1 1209059 R 176279 CDS YP_188751.1 57867094 3242908 complement(1209566..1210189) 1 NC_002976.3 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1210189 udk 3242908 udk Staphylococcus epidermidis RP62A uridine kinase YP_188751.1 1209566 R 176279 CDS YP_188752.1 57867095 3242909 complement(1210189..1211457) 1 NC_002976.3 identified by match to protein family HMM PF01136; U32 family peptidase 1211457 3242909 SERP1176 Staphylococcus epidermidis RP62A U32 family peptidase YP_188752.1 1210189 R 176279 CDS YP_188753.1 57867096 3242910 complement(1211475..1212398) 1 NC_002976.3 identified by match to protein family HMM PF01136; U32 family peptidase 1212398 3242910 SERP1177 Staphylococcus epidermidis RP62A U32 family peptidase YP_188753.1 1211475 R 176279 CDS YP_188754.1 57867097 3242911 complement(1212401..1213036) 1 NC_002976.3 identified by match to protein family HMM PF01596; O-methyltransferase 1213036 3242911 SERP1178 Staphylococcus epidermidis RP62A O-methyltransferase YP_188754.1 1212401 R 176279 CDS YP_188755.1 57867098 3242912 complement(1213465..1213773) 1 NC_002976.3 identified by similarity to OMNI:SA1670; hypothetical protein 1213773 3242912 SERP1179 Staphylococcus epidermidis RP62A hypothetical protein YP_188755.1 1213465 R 176279 CDS YP_188756.1 57867099 3242913 complement(1213788..1214216) 1 NC_002976.3 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1214216 3242913 SERP1180 Staphylococcus epidermidis RP62A Holliday junction resolvase-like protein YP_188756.1 1213788 R 176279 CDS YP_188757.1 57867100 3242914 complement(1214218..1214478) 1 NC_002976.3 identified by similarity to OMNI:SA1672; hypothetical protein 1214478 3242914 SERP1181 Staphylococcus epidermidis RP62A hypothetical protein YP_188757.1 1214218 R 176279 CDS YP_188758.1 57867101 3242915 complement(1214542..1217172) 1 NC_002976.3 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1217172 alaS 3242915 alaS Staphylococcus epidermidis RP62A alanyl-tRNA synthetase YP_188758.1 1214542 R 176279 CDS YP_188759.1 57867110 3241854 complement(1217501..1219933) 1 NC_002976.3 identified by match to protein family HMM TIGR01448; RecD/TraA family helicase 1219933 3241854 SERP1183 Staphylococcus epidermidis RP62A RecD/TraA family helicase YP_188759.1 1217501 R 176279 CDS YP_188760.1 57867111 3241813 complement(1219935..1220603) 1 NC_002976.3 identified by similarity to OMNI:SA1675; match to protein family HMM PF00515; TPR domain-containing protein 1220603 3241813 SERP1184 Staphylococcus epidermidis RP62A TPR domain-containing protein YP_188760.1 1219935 R 176279 CDS YP_188761.1 57867112 3241814 complement(1220766..1221884) 1 NC_002976.3 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1221884 mnmA 3241814 mnmA Staphylococcus epidermidis RP62A tRNA-specific 2-thiouridylase MnmA YP_188761.1 1220766 R 176279 CDS YP_188762.1 57867113 3241815 complement(1221884..1223026) 1 NC_002976.3 identified by match to protein family HMM PF00266; aminotransferase class V 1223026 3241815 SERP1186 Staphylococcus epidermidis RP62A aminotransferase class V YP_188762.1 1221884 R 176279 CDS YP_188763.1 57867114 3241816 1223269..1224264 1 NC_002976.3 identified by match to protein family HMM PF00296; luciferase 1224264 3241816 SERP1187 Staphylococcus epidermidis RP62A luciferase YP_188763.1 1223269 D 176279 CDS YP_188764.1 57867115 3241817 complement(1224464..1224607) 1 NC_002976.3 identified by similarity to OMNI:SA1679; hypothetical protein 1224607 3241817 SERP1188 Staphylococcus epidermidis RP62A hypothetical protein YP_188764.1 1224464 R 176279 CDS YP_188765.1 57867116 3241818 complement(1224793..1225215) 1 NC_002976.3 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein 1225215 3241818 SERP1189 Staphylococcus epidermidis RP62A Rrf2 family protein YP_188765.1 1224793 R 176279 CDS YP_188766.1 57867117 3241819 1225301..1226572 1 NC_002976.3 identified by match to protein family HMM PF00004; recombination factor protein RarA 1226572 3241819 SERP1190 Staphylococcus epidermidis RP62A recombination factor protein RarA YP_188766.1 1225301 D 176279 CDS YP_188767.1 57867124 3241826 complement(1226766..1227542) 1 NC_002976.3 identified by match to protein family HMM PF00899; HesA/MoeB/ThiF family protein 1227542 3241826 SERP1191 Staphylococcus epidermidis RP62A HesA/MoeB/ThiF family protein YP_188767.1 1226766 R 176279 CDS YP_188768.1 57867125 3241827 complement(1228098..1229864) 1 NC_002976.3 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1229864 aspS 3241827 aspS Staphylococcus epidermidis RP62A aspartyl-tRNA synthetase YP_188768.1 1228098 R 176279 CDS YP_188769.1 57867126 3241828 complement(1229867..1231141) 1 NC_002976.3 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1231141 hisS 3241828 hisS Staphylococcus epidermidis RP62A histidyl-tRNA synthetase YP_188769.1 1229867 R 176279 CDS YP_188770.1 57867127 3241829 complement(1231513..1232388) 1 NC_002976.3 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1232388 3241829 SERP1194 Staphylococcus epidermidis RP62A N-acetylmuramoyl-L-alanine amidase YP_188770.1 1231513 R 176279 CDS YP_188771.1 57867128 3241830 complement(1232385..1232837) 1 NC_002976.3 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1232837 dtd 3241830 dtd Staphylococcus epidermidis RP62A D-tyrosyl-tRNA(Tyr) deacylase YP_188771.1 1232385 R 176279 CDS YP_188772.1 57867129 3241831 complement(1232851..1235040) 1 NC_002976.3 identified by similarity to EGAD:107375; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1235040 relA-2 3241831 relA-2 Staphylococcus epidermidis RP62A GTP pyrophosphokinase YP_188772.1 1232851 R 176279 CDS YP_188773.1 57867130 3241832 1235389..1235490 1 NC_002976.3 hypothetical protein 1235490 3241832 SERP1197 Staphylococcus epidermidis RP62A hypothetical protein YP_188773.1 1235389 D 176279 CDS YP_188774.1 57867131 3241833 complement(1235559..1236077) 1 NC_002976.3 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1236077 apt 3241833 apt Staphylococcus epidermidis RP62A adenine phosphoribosyltransferase YP_188774.1 1235559 R 176279 CDS YP_188775.1 57867139 3241032 complement(1236096..1238369) 1 NC_002976.3 identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1238369 recJ 3241032 recJ Staphylococcus epidermidis RP62A single-stranded-DNA-specific exonuclease RecJ YP_188775.1 1236096 R 176279 CDS YP_188776.1 57867140 3241034 complement(1239114..1241405) 1 NC_002976.3 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1241405 3241034 SERP1201 Staphylococcus epidermidis RP62A bifunctional preprotein translocase subunit SecD/SecF YP_188776.1 1239114 R 176279 CDS YP_188777.1 57867141 3241035 complement(1241744..1242004) 1 NC_002976.3 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit 1242004 yajC 3241035 yajC Staphylococcus epidermidis RP62A preprotein translocase, YajC subunit YP_188777.1 1241744 R 176279 CDS YP_188778.1 57867142 3241036 complement(1242020..1243159) 1 NC_002976.3 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1243159 tgt 3241036 tgt Staphylococcus epidermidis RP62A queuine tRNA-ribosyltransferase YP_188778.1 1242020 R 176279 CDS YP_188779.1 57867143 3241037 complement(1243180..1244205) 1 NC_002976.3 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1244205 queA 3241037 queA Staphylococcus epidermidis RP62A S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_188779.1 1243180 R 176279 CDS YP_188780.1 57867144 3241038 complement(1244207..1245211) 1 NC_002976.3 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1245211 ruvB 3241038 ruvB Staphylococcus epidermidis RP62A Holliday junction DNA helicase RuvB YP_188780.1 1244207 R 176279 CDS YP_188781.1 57867153 3241102 complement(1245225..1245827) 1 NC_002976.3 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1245827 ruvA 3241102 ruvA Staphylococcus epidermidis RP62A Holliday junction DNA helicase RuvA YP_188781.1 1245225 R 176279 CDS YP_188782.1 57867154 3241103 complement(1245840..1246295) 1 NC_002976.3 identified by match to protein family HMM PF01842; hypothetical protein 1246295 3241103 SERP1207 Staphylococcus epidermidis RP62A hypothetical protein YP_188782.1 1245840 R 176279 CDS YP_188783.1 57867155 3241104 complement(1246307..1247599) 1 NC_002976.3 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1247599 obgE 3241104 obgE Staphylococcus epidermidis RP62A GTPase ObgE YP_188783.1 1246307 R 176279 CDS YP_188784.1 57867156 3241105 complement(1247745..1248029) 1 NC_002976.3 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1248029 rpmA 3241105 rpmA Staphylococcus epidermidis RP62A 50S ribosomal protein L27 YP_188784.1 1247745 R 176279 CDS YP_188785.1 57867157 3241106 complement(1248041..1248361) 1 NC_002976.3 identified by similarity to OMNI:SA1701; match to protein family HMM PF04327; hypothetical protein 1248361 3241106 SERP1210 Staphylococcus epidermidis RP62A hypothetical protein YP_188785.1 1248041 R 176279 CDS YP_188786.1 57867158 3241107 complement(1248366..1248674) 1 NC_002976.3 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1248674 rplU 3241107 rplU Staphylococcus epidermidis RP62A 50S ribosomal protein L21 YP_188786.1 1248366 R 176279 CDS YP_188787.1 57867159 3241108 complement(1248796..1249317) 1 NC_002976.3 identified by match to protein family HMM PF04093; rod shape-determining protein MreD 1249317 3241108 SERP1212 Staphylococcus epidermidis RP62A rod shape-determining protein MreD YP_188787.1 1248796 R 176279 CDS YP_188788.1 57867160 3241109 complement(1249317..1250156) 1 NC_002976.3 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1250156 mreC 3241109 mreC Staphylococcus epidermidis RP62A rod shape-determining protein MreC YP_188788.1 1249317 R 176279 CDS YP_188789.1 57867105 3241849 complement(1250563..1250703) 1 NC_002976.3 hypothetical protein 1250703 3241849 SERP1214 Staphylococcus epidermidis RP62A hypothetical protein YP_188789.1 1250563 R 176279 CDS YP_188790.1 57867106 3241850 complement(1250787..1251272) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1531; hypothetical protein 1251272 3241850 SERP1215 Staphylococcus epidermidis RP62A hypothetical protein YP_188790.1 1250787 R 176279 CDS YP_188791.1 57867107 3241851 1251437..1251616 1 NC_002976.3 identified by similarity to GP:14247423; hypothetical protein 1251616 3241851 SERP1216 Staphylococcus epidermidis RP62A hypothetical protein YP_188791.1 1251437 D 176279 CDS YP_188792.1 57867108 3241852 complement(1252055..1252717) 1 NC_002976.3 Tn554 hypothetical protein 1252717 3241852 SERP1218 Staphylococcus epidermidis RP62A Tn554 hypothetical protein YP_188792.1 1252055 R 176279 CDS YP_188794.1 57867109 3241853 1253251..1253982 1 NC_002976.3 identified by similarity to EGAD:8703; match to protein family HMM PF00398; Tn554, rRNA adenine N-6-methyltransferase 1253982 ermA-1 3241853 ermA-1 Staphylococcus epidermidis RP62A Tn554, rRNA adenine N-6-methyltransferase YP_188794.1 1253251 D 176279 CDS YP_188795.1 57867118 3241820 complement(1254108..1254890) 1 NC_002976.3 identified by similarity to EGAD:9921; match to protein family HMM PF01909; Tn554, streptomycin 3''-adenylyltransferase 1254890 spc-1 3241820 spc-1 Staphylococcus epidermidis RP62A Tn554, streptomycin 3''-adenylyltransferase YP_188795.1 1254108 R 176279 CDS YP_188796.1 57867119 3241821 complement(1255041..1255418) 1 NC_002976.3 identified by similarity to EGAD:6135; Tn554, transposase C 1255418 tnpC-1 3241821 tnpC-1 Staphylococcus epidermidis RP62A Tn554, transposase C YP_188796.1 1255041 R 176279 CDS YP_188797.1 57867120 3241822 complement(1255425..1257317) 1 NC_002976.3 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase B 1257317 tnpB-1 3241822 tnpB-1 Staphylococcus epidermidis RP62A Tn554, transposase B YP_188797.1 1255425 R 176279 CDS YP_188798.1 57867121 3241823 complement(1257314..1258399) 1 NC_002976.3 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase A 1258399 tnpA-1 3241823 tnpA-1 Staphylococcus epidermidis RP62A Tn554, transposase A YP_188798.1 1257314 R 176279 CDS YP_188799.1 57867122 3241824 complement(1258518..1259072) 1 NC_002976.3 disrupted by a copy of Tn554 may be nonfunctional; identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; truncated DNA repair protein RadC 1259072 3241824 SERP1225 Staphylococcus epidermidis RP62A truncated DNA repair protein RadC YP_188799.1 1258518 R 176279 CDS YP_188800.1 57867123 3241825 complement(1259069..1259779) 1 NC_002976.3 identified by match to protein family HMM PF01478; type III leader peptidase 1259779 3241825 SERP1226 Staphylococcus epidermidis RP62A type III leader peptidase YP_188800.1 1259069 R 176279 CDS YP_188801.1 57867132 3241834 complement(1259963..1261228) 1 NC_002976.3 identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase/dihydrofolate synthase 1261228 folC 3241834 folC Staphylococcus epidermidis RP62A folylpolyglutamate synthase/dihydrofolate synthase YP_188801.1 1259963 R 176279 CDS YP_188802.1 57867133 3241835 complement(1261239..1263869) 1 NC_002976.3 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1263869 valS 3241835 valS Staphylococcus epidermidis RP62A valyl-tRNA synthetase YP_188802.1 1261239 R 176279 CDS YP_188803.1 57867134 3241836 1264212..1264772 1 NC_002976.3 identified by similarity to EGAD:6433; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 1264772 3241836 SERP1229 Staphylococcus epidermidis RP62A DNA-3-methyladenine glycosylase I YP_188803.1 1264212 D 176279 CDS YP_188804.1 57867135 3241837 complement(1264939..1266006) 1 NC_002976.3 identified by match to protein family HMM PF05145; hypothetical protein 1266006 3241837 SERP1230 Staphylococcus epidermidis RP62A hypothetical protein YP_188804.1 1264939 R 176279 CDS YP_188805.1 57867136 3241838 complement(1266296..1267579) 1 NC_002976.3 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1267579 hemL-1 3241838 hemL-1 Staphylococcus epidermidis RP62A glutamate-1-semialdehyde aminotransferase YP_188805.1 1266296 R 176279 CDS YP_188806.1 57867137 3241030 complement(1267603..1268577) 1 NC_002976.3 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1268577 hemB 3241030 hemB Staphylococcus epidermidis RP62A delta-aminolevulinic acid dehydratase YP_188806.1 1267603 R 176279 CDS YP_188807.1 57867138 3241031 complement(1268567..1269247) 1 NC_002976.3 identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase 1269247 hemD 3241031 hemD Staphylococcus epidermidis RP62A uroporphyrinogen-III synthase YP_188807.1 1268567 R 176279 CDS YP_188808.1 57867145 3241039 complement(1269281..1270207) 1 NC_002976.3 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1270207 hemC 3241039 hemC Staphylococcus epidermidis RP62A porphobilinogen deaminase YP_188808.1 1269281 R 176279 CDS YP_188809.1 57867146 3241040 complement(1270261..1271073) 1 NC_002976.3 identified by similarity to EGAD:15411; match to protein family HMM PF01578; hemX protein 1271073 3241040 SERP1235 Staphylococcus epidermidis RP62A hemX protein YP_188809.1 1270261 R 176279 CDS YP_188810.1 57867147 3241041 complement(1271095..1272441) 1 NC_002976.3 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1272441 hemA 3241041 hemA Staphylococcus epidermidis RP62A glutamyl-tRNA reductase YP_188810.1 1271095 R 176279 CDS YP_188811.1 57867148 3241042 complement(1272611..1273198) 1 NC_002976.3 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1273198 engB 3241042 engB Staphylococcus epidermidis RP62A ribosome biogenesis GTP-binding protein YsxC YP_188811.1 1272611 R 176279 CDS YP_188812.1 57867149 3241043 complement(1273310..1274572) 1 NC_002976.3 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1274572 clpX 3241043 clpX Staphylococcus epidermidis RP62A ATP-dependent protease ATP-binding subunit ClpX YP_188812.1 1273310 R 176279 CDS YP_188813.1 57867150 3241044 complement(1274859..1276160) 1 NC_002976.3 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1276160 tig 3241044 tig Staphylococcus epidermidis RP62A trigger factor YP_188813.1 1274859 R 176279 CDS YP_188814.1 57867151 3241045 complement(1276321..1277244) 1 NC_002976.3 identified by similarity to OMNI:SA1723; hypothetical protein 1277244 3241045 SERP1240 Staphylococcus epidermidis RP62A hypothetical protein YP_188814.1 1276321 R 176279 CDS YP_188815.1 57867152 3241101 complement(1277261..1277872) 1 NC_002976.3 identified by match to protein family HMM PF00293; MutT/nudix family protein 1277872 3241101 SERP1241 Staphylococcus epidermidis RP62A MutT/nudix family protein YP_188815.1 1277261 R 176279 CDS YP_188816.1 57867161 3241110 complement(1278290..1278646) 1 NC_002976.3 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1278646 rplT 3241110 rplT Staphylococcus epidermidis RP62A 50S ribosomal protein L20 YP_188816.1 1278290 R 176279 CDS YP_188817.1 57867162 3241111 complement(1278698..1278898) 1 NC_002976.3 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1278898 rpmI 3241111 rpmI Staphylococcus epidermidis RP62A 50S ribosomal protein L35 YP_188817.1 1278698 R 176279 CDS YP_188818.1 57867163 3241112 complement(1278926..1279453) 1 NC_002976.3 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1279453 infC 3241112 infC Staphylococcus epidermidis RP62A translation initiation factor IF-3 YP_188818.1 1278926 R 176279 CDS YP_188819.1 57867164 3241113 complement(1279661..1281163) 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 1281163 3241113 SERP1245 Staphylococcus epidermidis RP62A amino acid permease YP_188819.1 1279661 R 176279 CDS YP_188820.1 57867165 3241114 complement(1281592..1283529) 1 NC_002976.3 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1283529 thrS 3241114 thrS Staphylococcus epidermidis RP62A threonyl-tRNA synthetase YP_188820.1 1281592 R 176279 CDS YP_188821.1 57867166 3241115 complement(1283882..1284802) 1 NC_002976.3 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 1284802 dnaI 3241115 dnaI Staphylococcus epidermidis RP62A primosomal protein DnaI YP_188821.1 1283882 R 176279 CDS YP_188822.1 57867167 3241116 complement(1284802..1286172) 1 NC_002976.3 identified by similarity to EGAD:12808; replication initiation and membrane attachment protein 1286172 3241116 SERP1248 Staphylococcus epidermidis RP62A replication initiation and membrane attachment protein YP_188822.1 1284802 R 176279 CDS YP_188823.1 57867168 3241117 complement(1286173..1286643) 1 NC_002976.3 identified by match to protein family HMM PF02644; match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator 1286643 nrdR 3241117 nrdR Staphylococcus epidermidis RP62A NrdR family transcriptional regulator YP_188823.1 1286173 R 176279 CDS YP_188824.1 57867169 3241118 complement(1287163..1288188) 1 NC_002976.3 identified by similarity to EGAD:107759; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 1288188 gapA-2 3241118 gapA-2 Staphylococcus epidermidis RP62A glyceraldehyde 3-phosphate dehydrogenase YP_188824.1 1287163 R 176279 CDS YP_188825.1 57867170 3242920 complement(1289032..1289643) 1 NC_002976.3 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1289643 coaE 3242920 coaE Staphylococcus epidermidis RP62A dephospho-CoA kinase YP_188825.1 1289032 R 176279 CDS YP_188826.1 57867171 3242921 complement(1289659..1290531) 1 NC_002976.3 In the Gram-positive bacteria, the preferred gene symbol is fpg. In other prokaryotes, the gene symbol is mutM.; identified by similarity to EGAD:8853; match to protein family HMM PF01149; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase 1290531 fpg 3242921 fpg Staphylococcus epidermidis RP62A formamidopyrimidine-DNA glycosylase YP_188826.1 1289659 R 176279 CDS YP_188827.1 57867172 3242922 complement(1290547..1293177) 1 NC_002976.3 identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 1293177 polA 3242922 polA Staphylococcus epidermidis RP62A DNA polymerase I YP_188827.1 1290547 R 176279 CDS YP_188828.1 57867173 3242923 complement(1293472..1295169) 1 NC_002976.3 identified by similarity to EGAD:18590; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory box histidine kinase PhoR 1295169 phoR 3242923 phoR Staphylococcus epidermidis RP62A sensory box histidine kinase PhoR YP_188828.1 1293472 R 176279 CDS YP_188829.1 57867182 3240848 complement(1295169..1295879) 1 NC_002976.3 identified by similarity to EGAD:18490; match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory protein PhoP 1295879 phoP 3240848 phoP Staphylococcus epidermidis RP62A alkaline phosphatase synthesis transcriptional regulatory protein PhoP YP_188829.1 1295169 R 176279 CDS YP_188830.1 57867183 3240849 complement(1296195..1297463) 1 NC_002976.3 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1297463 icd 3240849 icd Staphylococcus epidermidis RP62A isocitrate dehydrogenase YP_188830.1 1296195 R 176279 CDS YP_188831.1 57867184 3240850 complement(1297506..1298627) 1 NC_002976.3 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1298627 gltA 3240850 gltA Staphylococcus epidermidis RP62A citrate synthase YP_188831.1 1297506 R 176279 CDS YP_188832.1 57867185 3240851 complement(1298756..1299928) 1 NC_002976.3 identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 1299928 3240851 SERP1259 Staphylococcus epidermidis RP62A IS256-like transposase YP_188832.1 1298756 R 176279 CDS YP_188833.1 57867186 3240852 1300307..1301665 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 1301665 3240852 SERP1260 Staphylococcus epidermidis RP62A amino acid permease YP_188833.1 1300307 D 176279 CDS YP_188834.1 57867187 3240853 complement(1302046..1303803) 1 NC_002976.3 identified by similarity to EGAD:37614; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 1303803 pyk 3240853 pyk Staphylococcus epidermidis RP62A pyruvate kinase YP_188834.1 1302046 R 176279 CDS YP_188835.1 57867188 3240854 complement(1303827..1304795) 1 NC_002976.3 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1304795 pfkA 3240854 pfkA Staphylococcus epidermidis RP62A 6-phosphofructokinase YP_188835.1 1303827 R 176279 CDS YP_188836.1 57867189 3240855 complement(1304973..1305917) 1 NC_002976.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1305917 accA 3240855 accA Staphylococcus epidermidis RP62A acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_188836.1 1304973 R 176279 CDS YP_188837.1 57867206 3241703 complement(1305917..1306774) 1 NC_002976.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1306774 accD 3241703 accD Staphylococcus epidermidis RP62A acetyl-CoA carboxylase subunit beta YP_188837.1 1305917 R 176279 CDS YP_188838.1 57867207 3241704 complement(1306873..1308102) 1 NC_002976.3 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme 1308102 3241704 SERP1265 Staphylococcus epidermidis RP62A NADP-dependent malic enzyme YP_188838.1 1306873 R 176279 CDS YP_188839.1 57867208 3241705 complement(1308406..1311603) 1 NC_002976.3 identified by similarity to EGAD:108043; match to protein family HMM PF02231; match to protein family HMM TIGR00594; DNA polymerase III, alpha subunit 1311603 dnaE 3241705 dnaE Staphylococcus epidermidis RP62A DNA polymerase III, alpha subunit YP_188839.1 1308406 R 176279 CDS YP_188840.1 57867209 3241706 complement(1311627..1312565) 1 NC_002976.3 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 1312565 3241706 SERP1267 Staphylococcus epidermidis RP62A DHH family protein YP_188840.1 1311627 R 176279 CDS YP_188841.1 57867210 3241707 complement(1312599..1313897) 1 NC_002976.3 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; CBS domain-containing protein 1313897 3241707 SERP1268 Staphylococcus epidermidis RP62A CBS domain-containing protein YP_188841.1 1312599 R 176279 CDS YP_188842.1 57867211 3241708 1314095..1314508 1 NC_002976.3 identified by similarity to OMNI:SA1753; match to protein family HMM PF00582; universal stress protein 1314508 3241708 SERP1269 Staphylococcus epidermidis RP62A universal stress protein YP_188842.1 1314095 D 176279 CDS YP_188843.1 57867212 3241709 complement(1314809..1315498) 1 NC_002976.3 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 1315498 3241709 SERP1270 Staphylococcus epidermidis RP62A metal-dependent hydrolase YP_188843.1 1314809 R 176279 CDS YP_188844.1 57867213 3241710 1315670..1316725 1 NC_002976.3 identified by similarity to EGAD:30261; match to protein family HMM PF00557; proline dipeptidase 1316725 pepQ 3241710 pepQ Staphylococcus epidermidis RP62A proline dipeptidase YP_188844.1 1315670 D 176279 CDS YP_188845.1 57867221 3241718 complement(1316789..1317904) 1 NC_002976.3 identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1317904 ald 3241718 ald Staphylococcus epidermidis RP62A alanine dehydrogenase YP_188845.1 1316789 R 176279 CDS YP_188846.1 57867222 3241719 1318052..1318552 1 NC_002976.3 identified by similarity to OMNI:SA1759; match to protein family HMM PF00582; universal stress protein 1318552 3241719 SERP1273 Staphylococcus epidermidis RP62A universal stress protein YP_188846.1 1318052 D 176279 CDS YP_188847.1 57867223 3241721 complement(1319186..1320439) 1 NC_002976.3 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1320439 ackA 3241721 ackA Staphylococcus epidermidis RP62A acetate kinase YP_188847.1 1319186 R 176279 CDS YP_188848.1 57867224 3241722 complement(1320528..1321475) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1590; hypothetical protein 1321475 3241722 SERP1276 Staphylococcus epidermidis RP62A hypothetical protein YP_188848.1 1320528 R 176279 CDS YP_188849.1 57867225 3241723 complement(1321604..1322098) 1 NC_002976.3 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1322098 tpx 3241723 tpx Staphylococcus epidermidis RP62A thiol peroxidase YP_188849.1 1321604 R 176279 CDS YP_188850.1 57867226 3241724 complement(1322341..1323105) 1 NC_002976.3 identified by similarity to OMNI:SA1763; match to protein family HMM PF01925; hypothetical protein 1323105 3241724 SERP1278 Staphylococcus epidermidis RP62A hypothetical protein YP_188850.1 1322341 R 176279 CDS YP_188851.1 57867227 3241725 complement(1323145..1324368) 1 NC_002976.3 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1324368 thiI 3241725 thiI Staphylococcus epidermidis RP62A thiamine biosynthesis protein ThiI YP_188851.1 1323145 R 176279 CDS YP_188852.1 57867237 3241735 complement(1324368..1325507) 1 NC_002976.3 identified by match to protein family HMM PF00266; aminotransferase class V 1325507 3241735 SERP1280 Staphylococcus epidermidis RP62A aminotransferase class V YP_188852.1 1324368 R 176279 CDS YP_188853.1 57867238 3241736 complement(1325837..1327531) 1 NC_002976.3 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1327531 3241736 SERP1281 Staphylococcus epidermidis RP62A septation ring formation regulator EzrA YP_188853.1 1325837 R 176279 CDS YP_188854.1 57867239 3241420 1327666..1328136 1 NC_002976.3 identified by match to protein family HMM PF01590; GAF domain-containing protein 1328136 3241420 SERP1282 Staphylococcus epidermidis RP62A GAF domain-containing protein YP_188854.1 1327666 D 176279 CDS YP_188855.1 57867240 3241421 complement(1328209..1328325) 1 NC_002976.3 hypothetical protein 1328325 3241421 SERP1283 Staphylococcus epidermidis RP62A hypothetical protein YP_188855.1 1328209 R 176279 CDS YP_188856.1 57867241 3241422 1328357..1328959 1 NC_002976.3 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1328959 rpsD 3241422 rpsD Staphylococcus epidermidis RP62A 30S ribosomal protein S4 YP_188856.1 1328357 D 176279 CDS YP_188857.1 57867242 3241423 complement(1329229..1329975) 1 NC_002976.3 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 1329975 3241423 SERP1285 Staphylococcus epidermidis RP62A glycerophosphoryl diester phosphodiesterase YP_188857.1 1329229 R 176279 CDS YP_188858.1 57867243 3241424 1330053..1330493 1 NC_002976.3 identified by match to protein family HMM PF02566; OsmC/Ohr family protein 1330493 3241424 SERP1286 Staphylococcus epidermidis RP62A OsmC/Ohr family protein YP_188858.1 1330053 D 176279 CDS YP_188859.1 57867244 3241425 1330620..1331783 1 NC_002976.3 identified by match to protein family HMM PF00266; aminotransferase class V 1331783 3241425 SERP1287 Staphylococcus epidermidis RP62A aminotransferase class V YP_188859.1 1330620 D 176279 CDS YP_188860.1 57867245 3241426 1331773..1333368 1 NC_002976.3 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1333368 serA 3241426 serA Staphylococcus epidermidis RP62A D-3-phosphoglycerate dehydrogenase YP_188860.1 1331773 D 176279 CDS YP_188861.1 57867251 3241432 complement(1333448..1334572) 1 NC_002976.3 identified by match to protein family HMM PF00702; HAD superfamily hydrolase 1334572 3241432 SERP1289 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_188861.1 1333448 R 176279 CDS YP_188862.1 57867252 3241433 complement(1334668..1336140) 1 NC_002976.3 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system, IIBC components 1336140 3241433 SERP1290 Staphylococcus epidermidis RP62A PTS system, IIBC components YP_188862.1 1334668 R 176279 CDS YP_188863.1 57867253 3241434 complement(1336350..1336973) 1 NC_002976.3 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1336973 3241434 SERP1291 Staphylococcus epidermidis RP62A 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_188863.1 1336350 R 176279 CDS YP_188864.1 57867254 3241435 1337253..1338491 1 NC_002976.3 identified by similarity to OMNI:NTL01LL2179; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease HtrA 1338491 3241435 SERP1292 Staphylococcus epidermidis RP62A serine protease HtrA YP_188864.1 1337253 D 176279 CDS YP_188865.1 57867255 3241436 complement(1338682..1339947) 1 NC_002976.3 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 1339947 tyrS 3241436 tyrS Staphylococcus epidermidis RP62A tyrosyl-tRNA synthetase YP_188865.1 1338682 R 176279 CDS YP_188866.1 57867256 3241437 1340351..1341256 1 NC_002976.3 identified by match to protein family HMM PF00912; transglycosylase 1341256 3241437 SERP1294 Staphylococcus epidermidis RP62A transglycosylase YP_188866.1 1340351 D 176279 CDS YP_188867.1 57867257 3241438 complement(1341346..1343013) 1 NC_002976.3 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1343013 fhs 3241438 fhs Staphylococcus epidermidis RP62A formate--tetrahydrofolate ligase YP_188867.1 1341346 R 176279 CDS YP_188868.1 57867258 3241439 complement(1343433..1344422) 1 NC_002976.3 identified by similarity to EGAD:41199; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A 1344422 ccpA 3241439 ccpA Staphylococcus epidermidis RP62A catabolite control protein A YP_188868.1 1343433 R 176279 CDS YP_188869.1 57867264 3241446 complement(1344678..1345769) 1 NC_002976.3 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase 1345769 3241446 SERP1297 Staphylococcus epidermidis RP62A bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase YP_188869.1 1344678 R 176279 CDS YP_188870.1 57867265 3241447 complement(1346204..1347427) 1 NC_002976.3 identified by similarity to OMNI:SA1788; hypothetical protein 1347427 3241447 SERP1298 Staphylococcus epidermidis RP62A hypothetical protein YP_188870.1 1346204 R 176279 CDS YP_188871.1 57867266 3241448 complement(1347505..1347996) 1 NC_002976.3 identified by similarity to OMNI:SA1789; hypothetical protein 1347996 3241448 SERP1299 Staphylococcus epidermidis RP62A hypothetical protein YP_188871.1 1347505 R 176279 CDS YP_188872.1 57867174 3242924 complement(1348071..1349384) 1 NC_002976.3 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1349384 murC 3242924 murC Staphylococcus epidermidis RP62A UDP-N-acetylmuramate--L-alanine ligase YP_188872.1 1348071 R 176279 CDS YP_188873.1 57867175 3242925 complement(1349405..1352914) 1 NC_002976.3 identified by match to protein family HMM PF01580; DNA translocase FtsK 1352914 3242925 SERP1301 Staphylococcus epidermidis RP62A DNA translocase FtsK YP_188873.1 1349405 R 176279 CDS YP_188874.1 57867176 3242926 complement(1352935..1353531) 1 NC_002976.3 identified by similarity to OMNI:SA1792; match to protein family HMM PF01588; hypothetical protein 1353531 3242926 SERP1302 Staphylococcus epidermidis RP62A hypothetical protein YP_188874.1 1352935 R 176279 CDS YP_188875.1 57867177 3242927 complement(1353554..1354408) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1621; hypothetical protein 1354408 3242927 SERP1303 Staphylococcus epidermidis RP62A hypothetical protein YP_188875.1 1353554 R 176279 CDS YP_188876.1 57867178 3242928 complement(1354546..1354857) 1 NC_002976.3 identified by match to protein family HMM PF00085; thioredoxin 1354857 3242928 SERP1304 Staphylococcus epidermidis RP62A thioredoxin YP_188876.1 1354546 R 176279 CDS YP_188877.1 57867179 3242929 complement(1354863..1355948) 1 NC_002976.3 identified by similarity to EGAD:40297; match to protein family HMM PF05343; glutamyl-aminopeptidase 1355948 pepA 3242929 pepA Staphylococcus epidermidis RP62A glutamyl-aminopeptidase YP_188877.1 1354863 R 176279 CDS YP_188878.1 57867180 3242930 1356033..1356347 1 NC_002976.3 identified by similarity to OMNI:SA1796; hypothetical protein 1356347 3242930 SERP1306 Staphylococcus epidermidis RP62A hypothetical protein YP_188878.1 1356033 D 176279 CDS YP_188879.1 57867181 3241839 complement(1356510..1357157) 1 NC_002976.3 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1357157 trmB 3241839 trmB Staphylococcus epidermidis RP62A tRNA (guanine-N(7)-)-methyltransferase YP_188879.1 1356510 R 176279 CDS YP_188880.1 57867190 3240856 complement(1357171..1357962) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1627; match to protein family HMM PF01636; hypothetical protein 1357962 3240856 SERP1308 Staphylococcus epidermidis RP62A hypothetical protein YP_188880.1 1357171 R 176279 CDS YP_188881.1 57867191 3240857 complement(1358349..1359197) 1 NC_002976.3 identified by similarity to SP:P19938; match to protein family HMM PF01063; match to protein family HMM TIGR01121; D-alanine aminotransferase 1359197 dat 3240857 dat Staphylococcus epidermidis RP62A D-alanine aminotransferase YP_188881.1 1358349 R 176279 CDS YP_188882.1 57867192 3240858 complement(1359201..1360610) 1 NC_002976.3 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1360610 3240858 SERP1310 Staphylococcus epidermidis RP62A dipeptidase PepV YP_188882.1 1359201 R 176279 CDS YP_188883.1 57867193 3240859 complement(1360918..1361346) 1 NC_002976.3 identified by similarity to OMNI:SA1802; hypothetical protein 1361346 3240859 SERP1311 Staphylococcus epidermidis RP62A hypothetical protein YP_188883.1 1360918 R 176279 CDS YP_188884.1 57867194 3241691 complement(1361364..1362056) 1 NC_002976.3 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase 1362056 3241691 SERP1312 Staphylococcus epidermidis RP62A pseudouridine synthase YP_188884.1 1361364 R 176279 CDS YP_188885.1 57867195 3241692 complement(1362053..1363714) 1 NC_002976.3 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1363714 3241692 SERP1313 Staphylococcus epidermidis RP62A polysaccharide biosynthesis protein YP_188885.1 1362053 R 176279 CDS YP_188886.1 57867196 3241693 complement(1363803..1363901) 1 NC_002976.3 hypothetical protein 1363901 3241693 SERP1314 Staphylococcus epidermidis RP62A hypothetical protein YP_188886.1 1363803 R 176279 CDS YP_188887.1 57867197 3241694 1363987..1365249 1 NC_002976.3 identified by similarity to OMNI:SA1805; match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 1365249 3241694 SERP1315 Staphylococcus epidermidis RP62A hypothetical protein YP_188887.1 1363987 D 176279 CDS YP_188888.1 57867198 3241695 complement(1365621..1376699) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein 1376699 3241695 SERP1316 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_188888.1 1365621 R 176279 CDS YP_188889.1 57867199 3241696 complement(1377104..1377415) 1 NC_002976.3 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1377415 3241696 SERP1317 Staphylococcus epidermidis RP62A rhodanese-like domain-containing protein YP_188889.1 1377104 R 176279 CDS YP_188890.1 57867200 3241697 complement(1377441..1379855) 1 NC_002976.3 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1379855 leuS 3241697 leuS Staphylococcus epidermidis RP62A leucyl-tRNA synthetase YP_188890.1 1377441 R 176279 CDS YP_188891.1 57867201 3241698 complement(1380147..1381361) 1 NC_002976.3 drug transporter 1381361 3241698 SERP1319 Staphylococcus epidermidis RP62A drug transporter YP_188891.1 1380147 R 176279 CDS YP_188892.1 57867202 3241699 1381468..1382421 1 NC_002976.3 identified by similarity to OMNI:SA1810; match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 1382421 3241699 SERP1320 Staphylococcus epidermidis RP62A hypothetical protein YP_188892.1 1381468 D 176279 CDS YP_188893.1 57867203 3241700 1382418..1382981 1 NC_002976.3 identified by similarity to OMNI:SA1811; hypothetical protein 1382981 3241700 SERP1321 Staphylococcus epidermidis RP62A hypothetical protein YP_188893.1 1382418 D 176279 CDS YP_188894.1 57867204 3241701 complement(1383215..1383625) 1 NC_002976.3 identified by match to protein family HMM TIGR01889; repressor of toxins 1383625 rot 3241701 rot Staphylococcus epidermidis RP62A repressor of toxins YP_188894.1 1383215 R 176279 CDS YP_188895.1 57867205 3241702 complement(1384106..1384933) 1 NC_002976.3 lysophospholipase 1384933 3241702 SERP1323 Staphylococcus epidermidis RP62A lysophospholipase YP_188895.1 1384106 R 176279 CDS YP_188896.1 57867214 3241711 1385177..1386178 1 NC_002976.3 identified by match to protein family HMM PF01619; proline dehydrogenase 1386178 putA 3241711 putA Staphylococcus epidermidis RP62A proline dehydrogenase YP_188896.1 1385177 D 176279 CDS YP_188897.1 57867215 3241712 complement(1386436..1386897) 1 NC_002976.3 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1386897 ribH 3241712 ribH Staphylococcus epidermidis RP62A 6,7-dimethyl-8-ribityllumazine synthase YP_188897.1 1386436 R 176279 CDS YP_188898.1 57867216 3241713 complement(1386910..1388091) 1 NC_002976.3 identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone-4-phosphate synthase 1388091 ribBA 3241713 ribBA Staphylococcus epidermidis RP62A 3,4-dihydroxy-2-butanone-4-phosphate synthase YP_188898.1 1386910 R 176279 CDS YP_188899.1 57867217 3241714 complement(1388104..1388736) 1 NC_002976.3 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1388736 ribE 3241714 ribE Staphylococcus epidermidis RP62A riboflavin synthase subunit alpha YP_188899.1 1388104 R 176279 CDS YP_188900.1 57867218 3241715 complement(1388743..1389786) 1 NC_002976.3 identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1389786 ribD 3241715 ribD Staphylococcus epidermidis RP62A riboflavin biosynthesis protein RibD YP_188900.1 1388743 R 176279 CDS YP_188901.1 57867219 3241716 complement(1390222..1391706) 1 NC_002976.3 identified by similarity to OMNI:SA1821; hypothetical protein 1391706 3241716 SERP1329 Staphylococcus epidermidis RP62A hypothetical protein YP_188901.1 1390222 R 176279 CDS YP_188902.1 57867220 3241717 complement(1392054..1392905) 1 NC_002976.3 identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase 1392905 3241717 SERP1330 Staphylococcus epidermidis RP62A N-acetylmuramoyl-L-alanine amidase YP_188902.1 1392054 R 176279 CDS YP_188903.1 57867228 3241726 complement(1393283..1393498) 1 NC_002976.3 identified by similarity to OMNI:SA1826; hypothetical protein 1393498 3241726 SERP1331 Staphylococcus epidermidis RP62A hypothetical protein YP_188903.1 1393283 R 176279 CDS YP_188904.1 57867229 3241727 1393531..1393650 1 NC_002976.3 hypothetical protein 1393650 3241727 SERP1332 Staphylococcus epidermidis RP62A hypothetical protein YP_188904.1 1393531 D 176279 CDS YP_188905.1 57867230 3241728 1393706..1394185 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1652; match to protein family HMM PF04542; hypothetical protein 1394185 3241728 SERP1333 Staphylococcus epidermidis RP62A hypothetical protein YP_188905.1 1393706 D 176279 CDS YP_188906.1 57867231 3241729 1394191..1394634 1 NC_002976.3 identified by similarity to OMNI:SA1828; hypothetical protein 1394634 3241729 SERP1334 Staphylococcus epidermidis RP62A hypothetical protein YP_188906.1 1394191 D 176279 CDS YP_188907.1 57867232 3241730 complement(1394621..1395064) 1 NC_002976.3 identified by similarity to OMNI:SA1829; hypothetical protein 1395064 3241730 SERP1335 Staphylococcus epidermidis RP62A hypothetical protein YP_188907.1 1394621 R 176279 CDS YP_188908.1 57867233 3241731 complement(1395204..1395917) 1 NC_002976.3 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1395917 tal 3241731 tal Staphylococcus epidermidis RP62A translaldolase YP_188908.1 1395204 R 176279 CDS YP_188909.1 57867234 3241732 1396194..1396502 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1657; hypothetical protein 1396502 3241732 SERP1337 Staphylococcus epidermidis RP62A hypothetical protein YP_188909.1 1396194 D 176279 CDS YP_188910.1 57867235 3241733 1396539..1396904 1 NC_002976.3 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1396904 3241733 SERP1338 Staphylococcus epidermidis RP62A camphor resistance protein CrcB YP_188910.1 1396539 D 176279 CDS YP_188911.1 57867236 3241734 1396901..1397254 1 NC_002976.3 identified by match to protein family HMM PF02537; CrcB family protein 1397254 3241734 SERP1339 Staphylococcus epidermidis RP62A CrcB family protein YP_188911.1 1396901 D 176279 CDS YP_188912.1 57867246 3241427 1397898..1398374 1 NC_002976.3 This element is disrupted by Tn554; may be nonfunctional due to interuption; ISSep1-like transposase 1398374 3241427 SERP1340 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188912.1 1397898 D 176279 CDS YP_188913.1 57867247 3241428 complement(1398493..1399155) 1 NC_002976.3 Tn554 hypothetical protein 1399155 3241428 SERP1341 Staphylococcus epidermidis RP62A Tn554 hypothetical protein YP_188913.1 1398493 R 176279 CDS YP_188915.1 57867248 3241429 1399689..1400420 1 NC_002976.3 identified by similarity to EGAD:8703; match to protein family HMM PF00398; Tn554, rRNA adenine N-6-methyltransferase 1400420 ermA-2 3241429 ermA-2 Staphylococcus epidermidis RP62A Tn554, rRNA adenine N-6-methyltransferase YP_188915.1 1399689 D 176279 CDS YP_188916.1 57867249 3241430 complement(1400546..1401328) 1 NC_002976.3 identified by similarity to EGAD:9921; match to protein family HMM PF01909; Tn554, streptomycin 3''-adenylyltransferase 1401328 spc-2 3241430 spc-2 Staphylococcus epidermidis RP62A Tn554, streptomycin 3''-adenylyltransferase YP_188916.1 1400546 R 176279 CDS YP_188917.1 57867250 3241431 complement(1401479..1401856) 1 NC_002976.3 identified by similarity to EGAD:6135; Tn554, transposase C 1401856 tnpC-2 3241431 tnpC-2 Staphylococcus epidermidis RP62A Tn554, transposase C YP_188917.1 1401479 R 176279 CDS YP_188918.1 57867259 3241440 complement(1401863..1403755) 1 NC_002976.3 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase B 1403755 tnpB-2 3241440 tnpB-2 Staphylococcus epidermidis RP62A Tn554, transposase B YP_188918.1 1401863 R 176279 CDS YP_188919.1 57867260 3241441 complement(1403752..1404837) 1 NC_002976.3 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase A 1404837 tnpA-2 3241441 tnpA-2 Staphylococcus epidermidis RP62A Tn554, transposase A YP_188919.1 1403752 R 176279 CDS YP_188920.1 57867261 3241442 1405027..1405623 1 NC_002976.3 This element is disrupted by Tn554; identified by match to protein family HMM PF02371; may be nonfunctional due to interruption; ISSep1-like transposase 1405623 3241442 SERP1348 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_188920.1 1405027 D 176279 CDS YP_188921.1 57867262 3241444 complement(1406293..1407129) 1 NC_002976.3 identified by match to protein family HMM PF00248; aldo/keto reductase 1407129 3241444 SERP1350 Staphylococcus epidermidis RP62A aldo/keto reductase YP_188921.1 1406293 R 176279 CDS YP_188922.1 57867263 3241445 complement(1407309..1408217) 1 NC_002976.3 identified by similarity to GP:14247561; hypothetical protein 1408217 3241445 SERP1351 Staphylococcus epidermidis RP62A hypothetical protein YP_188922.1 1407309 R 176279 CDS YP_188923.1 57867271 3241453 complement(1408320..1409519) 1 NC_002976.3 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1409519 metK 3241453 metK Staphylococcus epidermidis RP62A S-adenosylmethionine synthetase YP_188923.1 1408320 R 176279 CDS YP_188924.1 57867272 3241454 1409889..1411481 1 NC_002976.3 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1411481 pckA 3241454 pckA Staphylococcus epidermidis RP62A phosphoenolpyruvate carboxykinase YP_188924.1 1409889 D 176279 CDS YP_188925.1 57867273 3241455 complement(1411712..1412497) 1 NC_002976.3 identified by similarity to OMNI:SA1840; hypothetical protein 1412497 3241455 SERP1354 Staphylococcus epidermidis RP62A hypothetical protein YP_188925.1 1411712 R 176279 CDS YP_188926.1 57867274 3241456 complement(1412484..1412960) 1 NC_002976.3 identified by match to protein family HMM PF00293; MutT/nudix family protein 1412960 3241456 SERP1355 Staphylococcus epidermidis RP62A MutT/nudix family protein YP_188926.1 1412484 R 176279 CDS YP_188927.1 57867275 3241457 1413022..1413270 1 NC_002976.3 identified by similarity to OMNI:SA1842; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1413270 3241457 SERP1356 Staphylococcus epidermidis RP62A hypothetical protein YP_188927.1 1413022 D 176279 CDS YP_188928.1 57867276 3241458 complement(1413267..1414268) 1 NC_002976.3 identified by match to protein family HMM TIGR01928; O-succinylbenzoic acid synthetase 1414268 3241458 SERP1357 Staphylococcus epidermidis RP62A O-succinylbenzoic acid synthetase YP_188928.1 1413267 R 176279 CDS YP_188929.1 57867277 3241459 complement(1414258..1415682) 1 NC_002976.3 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 1415682 menE 3241459 menE Staphylococcus epidermidis RP62A O-succinylbenzoic acid--CoA ligase YP_188929.1 1414258 R 176279 CDS YP_188930.1 57867285 3240830 1416692..1416838 1 NC_002976.3 hypothetical protein 1416838 3240830 SERP1359 Staphylococcus epidermidis RP62A hypothetical protein YP_188930.1 1416692 D 176279 CDS YP_188931.1 57867286 3240831 1416933..1417598 1 NC_002976.3 surface lipoprotein-related protein 1417598 3240831 SERP1360 Staphylococcus epidermidis RP62A surface lipoprotein-related protein YP_188931.1 1416933 D 176279 CDS YP_188932.1 57867287 3240832 1417760..1418047 1 NC_002976.3 hypothetical protein 1418047 3240832 SERP1361 Staphylococcus epidermidis RP62A hypothetical protein YP_188932.1 1417760 D 176279 CDS YP_188933.1 57867288 3240833 1418574..1419308 1 NC_002976.3 hypothetical protein 1419308 3240833 SERP1362 Staphylococcus epidermidis RP62A hypothetical protein YP_188933.1 1418574 D 176279 CDS YP_188934.1 57867289 3240836 complement(1421818..1422372) 1 NC_002976.3 identified by similarity to OMNI:SA1885; hypothetical protein 1422372 3240836 SERP1365 Staphylococcus epidermidis RP62A hypothetical protein YP_188934.1 1421818 R 176279 CDS YP_188935.1 57867290 3240837 complement(1422508..1423956) 1 NC_002976.3 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1423956 hemG 3240837 hemG Staphylococcus epidermidis RP62A protoporphyrinogen oxidase YP_188935.1 1422508 R 176279 CDS YP_188936.1 57867298 3242850 complement(1424049..1424972) 1 NC_002976.3 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1424972 hemH 3242850 hemH Staphylococcus epidermidis RP62A ferrochelatase YP_188936.1 1424049 R 176279 CDS YP_188937.1 57867299 3242851 complement(1425049..1426083) 1 NC_002976.3 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1426083 hemE 3242851 hemE Staphylococcus epidermidis RP62A uroporphyrinogen decarboxylase YP_188937.1 1425049 R 176279 CDS YP_188938.1 57867300 3242852 1426403..1426906 1 NC_002976.3 identified by similarity to OMNI:SA1891; RNAIII-activating protein TRAP 1426906 3242852 SERP1369 Staphylococcus epidermidis RP62A RNAIII-activating protein TRAP YP_188938.1 1426403 D 176279 CDS YP_188939.1 57867301 3242853 complement(1427468..1428085) 1 NC_002976.3 identified by match to protein family HMM PF03596; cadmium resistance family protein 1428085 3242853 SERP1370 Staphylococcus epidermidis RP62A cadmium resistance family protein YP_188939.1 1427468 R 176279 CDS YP_188940.1 57867302 3242854 complement(1428144..1429367) 1 NC_002976.3 identified by similarity to EGAD:35133; ABC transporter permease 1429367 3242854 SERP1371 Staphylococcus epidermidis RP62A ABC transporter permease YP_188940.1 1428144 R 176279 CDS YP_188941.1 57867303 3242855 complement(1429360..1430100) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1430100 3242855 SERP1372 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188941.1 1429360 R 176279 CDS YP_188942.1 57867304 3242856 1430230..1430655 1 NC_002976.3 identified by match to protein family HMM PF01230; HIT family protein 1430655 3242856 SERP1373 Staphylococcus epidermidis RP62A HIT family protein YP_188942.1 1430230 D 176279 CDS YP_188943.1 57867305 3242857 1430732..1431103 1 NC_002976.3 identified by similarity to OMNI:SA1895; hypothetical protein 1431103 3242857 SERP1374 Staphylococcus epidermidis RP62A hypothetical protein YP_188943.1 1430732 D 176279 CDS YP_188944.1 57867314 3242866 1431269..1431829 1 NC_002976.3 identified by similarity to OMNI:SA1896; hypothetical protein 1431829 3242866 SERP1375 Staphylococcus epidermidis RP62A hypothetical protein YP_188944.1 1431269 D 176279 CDS YP_188945.1 57867315 3242867 1432032..1433009 1 NC_002976.3 identified by similarity to EGAD:7364; match to protein family HMM PF00639; protein export protein PrsA 1433009 3242867 SERP1376 Staphylococcus epidermidis RP62A protein export protein PrsA YP_188945.1 1432032 D 176279 CDS YP_188946.1 57867316 3242868 complement(1433159..1433263) 1 NC_002976.3 identified by similarity to OMNI:SA2433; hypothetical protein 1433263 3242868 SERP1377 Staphylococcus epidermidis RP62A hypothetical protein YP_188946.1 1433159 R 176279 CDS YP_188947.1 57867317 3242869 complement(1433435..1434376) 1 NC_002976.3 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease 1434376 cbf1 3242869 cbf1 Staphylococcus epidermidis RP62A 3'-5' exoribonuclease YP_188947.1 1433435 R 176279 CDS YP_188948.1 57867318 3242870 complement(1434373..1437312) 1 NC_002976.3 identified by similarity to OMNI:SA1899; hypothetical protein 1437312 3242870 SERP1379 Staphylococcus epidermidis RP62A hypothetical protein YP_188948.1 1434373 R 176279 CDS YP_188949.1 57867319 3242871 complement(1437302..1438498) 1 NC_002976.3 identified by match to protein family HMM PF00149; match to protein family HMM PF02549; DNA repair exonuclease 1438498 3242871 SERP1380 Staphylococcus epidermidis RP62A DNA repair exonuclease YP_188949.1 1437302 R 176279 CDS YP_188950.1 57867320 3242872 complement(1438769..1439113) 1 NC_002976.3 identified by similarity to OMNI:SA1902; hypothetical protein 1439113 3242872 SERP1381 Staphylococcus epidermidis RP62A hypothetical protein YP_188950.1 1438769 R 176279 CDS YP_188951.1 57867321 3242873 complement(1439186..1440316) 1 NC_002976.3 identified by similarity to OMNI:SA1903; match to protein family HMM PF04286; hypothetical protein 1440316 3242873 SERP1382 Staphylococcus epidermidis RP62A hypothetical protein YP_188951.1 1439186 R 176279 CDS YP_188952.1 57867330 3241909 complement(1440498..1440962) 1 NC_002976.3 Cro/CI family transcriptional regulator 1440962 3241909 SERP1383 Staphylococcus epidermidis RP62A Cro/CI family transcriptional regulator YP_188952.1 1440498 R 176279 CDS YP_188953.1 57867331 3241910 complement(1441233..1441856) 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 1441856 3241910 SERP1384 Staphylococcus epidermidis RP62A LuxR family transcriptional regulator YP_188953.1 1441233 R 176279 CDS YP_188954.1 57867267 3241449 complement(1441849..1442982) 1 NC_002976.3 identified by match to protein family HMM PF02518; sensor histidine kinase 1442982 3241449 SERP1385 Staphylococcus epidermidis RP62A sensor histidine kinase YP_188954.1 1441849 R 176279 CDS YP_188955.1 57867268 3241450 1443141..1443965 1 NC_002976.3 identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D 1443965 3241450 SERP1386 Staphylococcus epidermidis RP62A ribosomal large subunit pseudouridine synthase D YP_188955.1 1443141 D 176279 CDS YP_188956.1 57867269 3241451 complement(1444326..1445711) 1 NC_002976.3 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1445711 fumC 3241451 fumC Staphylococcus epidermidis RP62A fumarate hydratase YP_188956.1 1444326 R 176279 CDS YP_188957.1 57867270 3241452 complement(1445896..1446300) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1729; hypothetical protein 1446300 3241452 SERP1388 Staphylococcus epidermidis RP62A hypothetical protein YP_188957.1 1445896 R 176279 CDS YP_188958.1 57867278 3241460 complement(1446456..1446635) 1 NC_002976.3 identified by similarity to OMNI:SA1911; hypothetical protein 1446635 3241460 SERP1389 Staphylococcus epidermidis RP62A hypothetical protein YP_188958.1 1446456 R 176279 CDS YP_188959.1 57867279 3241461 complement(1446659..1447258) 1 NC_002976.3 identified by match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 1447258 3241461 SERP1390 Staphylococcus epidermidis RP62A glucosamine-6-phosphate isomerase YP_188959.1 1446659 R 176279 CDS YP_188960.1 57867280 3241462 complement(1447416..1447886) 1 NC_002976.3 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 1447886 3241462 SERP1391 Staphylococcus epidermidis RP62A RNA methyltransferase YP_188960.1 1447416 R 176279 CDS YP_188961.1 57867281 3241463 complement(1447883..1449013) 1 NC_002976.3 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; (Fe-S)-binding protein 1449013 3241463 SERP1392 Staphylococcus epidermidis RP62A (Fe-S)-binding protein YP_188961.1 1447883 R 176279 CDS YP_188962.1 57867282 3241464 complement(1449223..1449378) 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 1449378 3241464 SERP1393 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_188962.1 1449223 R 176279 CDS YP_188963.1 57867283 3241465 complement(1449875..1450597) 1 NC_002976.3 identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 1450597 3241465 SERP1394 Staphylococcus epidermidis RP62A amino acid ABC transporter ATP-binding protein YP_188963.1 1449875 R 176279 CDS YP_188964.1 57867284 3240829 complement(1450590..1452047) 1 NC_002976.3 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter substrate-binding protein 1452047 3240829 SERP1395 Staphylococcus epidermidis RP62A amino acid ABC transporter substrate-binding protein YP_188964.1 1450590 R 176279 CDS YP_188965.1 57867291 3240838 complement(1452286..1453344) 1 NC_002976.3 identified by match to protein family HMM PF02378; PTS system, IIC component 1453344 3240838 SERP1396 Staphylococcus epidermidis RP62A PTS system, IIC component YP_188965.1 1452286 R 176279 CDS YP_188966.1 57867292 3240839 complement(1453570..1454418) 1 NC_002976.3 identified by similarity to EGAD:7212; match to protein family HMM PF00089; glutamyl endopeptidase precursor SspA 1454418 sspA 3240839 sspA Staphylococcus epidermidis RP62A glutamyl endopeptidase precursor SspA YP_188966.1 1453570 R 176279 CDS YP_188967.1 57867293 3242845 complement(1462924..1463376) 1 NC_002976.3 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1463376 3242845 SERP1398 Staphylococcus epidermidis RP62A FUR family transcriptional regulator YP_188967.1 1462924 R 176279 CDS YP_188968.1 57867294 3242846 complement(1463472..1464422) 1 NC_002976.3 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 1464422 3242846 SERP1399 Staphylococcus epidermidis RP62A D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_188968.1 1463472 R 176279 CDS YP_188969.1 57867295 3242847 complement(1464425..1464883) 1 NC_002976.3 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 1464883 bcp 3242847 bcp Staphylococcus epidermidis RP62A bacterioferritin comigratory protein YP_188969.1 1464425 R 176279 CDS YP_188970.1 57867296 3242848 1464964..1466253 1 NC_002976.3 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1466253 hemL-2 3242848 hemL-2 Staphylococcus epidermidis RP62A glutamate-1-semialdehyde aminotransferase YP_188970.1 1464964 D 176279 CDS YP_188971.1 57867297 3242849 1466560..1467654 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1742; hypothetical protein 1467654 3242849 SERP1402 Staphylococcus epidermidis RP62A hypothetical protein YP_188971.1 1466560 D 176279 CDS YP_188972.1 57867306 3242858 complement(1467814..1469550) 1 NC_002976.3 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 1469550 3242858 SERP1403 Staphylococcus epidermidis RP62A ABC transporter permease/ATP-binding protein YP_188972.1 1467814 R 176279 CDS YP_188973.1 57867307 3242859 1469571..1469681 1 NC_002976.3 hypothetical protein 1469681 3242859 SERP1404 Staphylococcus epidermidis RP62A hypothetical protein YP_188973.1 1469571 D 176279 CDS YP_188974.1 57867308 3242860 complement(1469792..1470334) 1 NC_002976.3 identified by similarity to OMNI:SA1925; match to protein family HMM PF04167; hypothetical protein 1470334 3242860 SERP1405 Staphylococcus epidermidis RP62A hypothetical protein YP_188974.1 1469792 R 176279 CDS YP_188975.1 57867309 3242861 complement(1470441..1471484) 1 NC_002976.3 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 1471484 mutY 3242861 mutY Staphylococcus epidermidis RP62A A/G-specific adenine glycosylase YP_188975.1 1470441 R 176279 CDS YP_188976.1 57867310 3242862 1471665..1472639 1 NC_002976.3 identified by similarity to OMNI:SA1927; match to protein family HMM PF04307; hypothetical protein 1472639 3242862 SERP1407 Staphylococcus epidermidis RP62A hypothetical protein YP_188976.1 1471665 D 176279 CDS YP_188977.1 57867311 3242863 complement(1472825..1473655) 1 NC_002976.3 identified by similarity to OMNI:SA1928; hypothetical protein 1473655 3242863 SERP1408 Staphylococcus epidermidis RP62A hypothetical protein YP_188977.1 1472825 R 176279 CDS YP_188978.1 57867312 3242864 complement(1473664..1475181) 1 NC_002976.3 ABC transporter ATP-binding protein 1475181 3242864 SERP1409 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_188978.1 1473664 R 176279 CDS YP_188979.1 57867313 3242865 complement(1475197..1475487) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1749; hypothetical protein 1475487 3242865 SERP1410 Staphylococcus epidermidis RP62A hypothetical protein YP_188979.1 1475197 R 176279 CDS YP_188980.1 57867322 3242874 complement(1475504..1476307) 1 NC_002976.3 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1476307 recX 3242874 recX Staphylococcus epidermidis RP62A recombination regulator RecX YP_188980.1 1475504 R 176279 CDS YP_188981.1 57867323 3242875 complement(1476585..1477394) 1 NC_002976.3 monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase 1477394 3242875 SERP1412 Staphylococcus epidermidis RP62A glycosyltransferase YP_188981.1 1476585 R 176279 CDS YP_188982.1 57867324 3242876 complement(1477715..1478233) 1 NC_002976.3 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; ThiJ/PfpI family protein 1478233 3242876 SERP1413 Staphylococcus epidermidis RP62A ThiJ/PfpI family protein YP_188982.1 1477715 R 176279 CDS YP_188983.1 57867325 3242877 complement(1478533..1478694) 1 NC_002976.3 identified by similarity to OMNI:SA1934; hypothetical protein 1478694 3242877 SERP1414 Staphylococcus epidermidis RP62A hypothetical protein YP_188983.1 1478533 R 176279 CDS YP_188984.1 57867326 3242878 1478853..1479995 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1754; match to protein family HMM PF04055; radical SAM domain-containing protein 1479995 3242878 SERP1415 Staphylococcus epidermidis RP62A radical SAM domain-containing protein YP_188984.1 1478853 D 176279 CDS YP_188985.1 57867327 3242879 complement(1480132..1480662) 1 NC_002976.3 identified by match to protein family HMM PF03061; cytosolic long-chain acyl-CoA thioester hydrolase family protein 1480662 3242879 SERP1416 Staphylococcus epidermidis RP62A cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_188985.1 1480132 R 176279 CDS YP_188986.1 57867328 3242880 complement(1480742..1481983) 1 NC_002976.3 identified by match to protein family HMM PF02073; aminopeptidase 1481983 3242880 SERP1417 Staphylococcus epidermidis RP62A aminopeptidase YP_188986.1 1480742 R 176279 CDS YP_188987.1 57867329 3242881 complement(1481985..1482200) 1 NC_002976.3 identified by similarity to GP:14247652; hypothetical protein 1482200 3242881 SERP1418 Staphylococcus epidermidis RP62A hypothetical protein YP_188987.1 1481985 R 176279 CDS YP_188988.1 57867337 3241917 1482341..1482805 1 NC_002976.3 identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase 1482805 3241917 SERP1419 Staphylococcus epidermidis RP62A phosphotyrosine protein phosphatase YP_188988.1 1482341 D 176279 CDS YP_188989.1 57867338 3241918 1482813..1483097 1 NC_002976.3 identified by similarity to OMNI:SA1940; hypothetical protein 1483097 3241918 SERP1420 Staphylococcus epidermidis RP62A hypothetical protein YP_188989.1 1482813 D 176279 CDS YP_188990.1 57867339 3241919 1483504..1484682 1 NC_002976.3 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 1484682 3241919 SERP1421 Staphylococcus epidermidis RP62A ribonuclease BN YP_188990.1 1483504 D 176279 CDS YP_188991.1 57867340 3241920 complement(1484739..1485368) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator VraR 1485368 vraR 3241920 vraR Staphylococcus epidermidis RP62A DNA-binding response regulator VraR YP_188991.1 1484739 R 176279 CDS YP_188992.1 57867341 3241921 complement(1485358..1486404) 1 NC_002976.3 identified by match to protein family HMM PF02518; sensor histidine kinase VraS 1486404 vraS 3241921 vraS Staphylococcus epidermidis RP62A sensor histidine kinase VraS YP_188992.1 1485358 R 176279 CDS YP_188993.1 57867342 3241922 complement(1486401..1487102) 1 NC_002976.3 identified by similarity to OMNI:SA1944; hypothetical protein 1487102 3241922 SERP1424 Staphylococcus epidermidis RP62A hypothetical protein YP_188993.1 1486401 R 176279 CDS YP_188994.1 57867343 3241923 complement(1487117..1487512) 1 NC_002976.3 identified by similarity to OMNI:SA1945; hypothetical protein 1487512 3241923 SERP1425 Staphylococcus epidermidis RP62A hypothetical protein YP_188994.1 1487117 R 176279 CDS YP_188995.1 57867344 3241924 complement(1487661..1488416) 1 NC_002976.3 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1488416 map 3241924 map Staphylococcus epidermidis RP62A methionine aminopeptidase YP_188995.1 1487661 R 176279 CDS YP_188996.1 57867353 3240776 1488590..1489576 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1766; hypothetical protein 1489576 3240776 SERP1427 Staphylococcus epidermidis RP62A hypothetical protein YP_188996.1 1488590 D 176279 CDS YP_188997.1 57867354 3241933 complement(1489727..1490263) 1 NC_002976.3 hypothetical protein 1490263 3241933 SERP1428 Staphylococcus epidermidis RP62A hypothetical protein YP_188997.1 1489727 R 176279 CDS YP_188998.1 57867355 3241934 complement(1490704..1491429) 1 NC_002976.3 cobyric acid synthase 1491429 3241934 SERP1429 Staphylococcus epidermidis RP62A cobyric acid synthase YP_188998.1 1490704 R 176279 CDS YP_188999.1 57867356 3241935 complement(1491431..1492744) 1 NC_002976.3 Mur ligase 1492744 3241935 SERP1430 Staphylococcus epidermidis RP62A Mur ligase YP_188999.1 1491431 R 176279 CDS YP_189000.1 57867357 3241936 1492966..1493466 1 NC_002976.3 identified by similarity to EGAD:8114; match to protein family HMM PF00210; ferritin 1493466 3241936 SERP1431 Staphylococcus epidermidis RP62A ferritin YP_189000.1 1492966 D 176279 CDS YP_189001.1 57867358 3241937 1493655..1494209 1 NC_002976.3 identified by match to protein family HMM PF00929; exonuclease 1494209 3241937 SERP1432 Staphylococcus epidermidis RP62A exonuclease YP_189001.1 1493655 D 176279 CDS YP_189002.1 57867359 3241938 complement(1494240..1495310) 1 NC_002976.3 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1495310 dinP 3241938 dinP Staphylococcus epidermidis RP62A DNA polymerase IV YP_189002.1 1494240 R 176279 CDS YP_189003.1 57867360 3241939 complement(1495620..1496162) 1 NC_002976.3 identified by similarity to OMNI:SA1956; hypothetical protein 1496162 3241939 SERP1434 Staphylococcus epidermidis RP62A hypothetical protein YP_189003.1 1495620 R 176279 CDS YP_189004.1 57867361 3241940 complement(1496306..1497676) 1 NC_002976.3 identified by match to protein family HMM PF01938; match to protein family HMM TIGR00479; RNA methyltransferase 1497676 3241940 SERP1435 Staphylococcus epidermidis RP62A RNA methyltransferase YP_189004.1 1496306 R 176279 CDS YP_189005.1 57867370 3241949 complement(1497756..1498706) 1 NC_002976.3 similar to YegS from E. coli; lipid kinase 1498706 3241949 SERP1436 Staphylococcus epidermidis RP62A lipid kinase YP_189005.1 1497756 R 176279 CDS YP_189006.1 57867371 3241950 complement(1498931..1500358) 1 NC_002976.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1500358 gatB 3241950 gatB Staphylococcus epidermidis RP62A aspartyl/glutamyl-tRNA amidotransferase subunit B YP_189006.1 1498931 R 176279 CDS YP_189007.1 57867372 3241951 complement(1500371..1501828) 1 NC_002976.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1501828 gatA 3241951 gatA Staphylococcus epidermidis RP62A aspartyl/glutamyl-tRNA amidotransferase subunit A YP_189007.1 1500371 R 176279 CDS YP_189008.1 57867373 3241952 complement(1501830..1502132) 1 NC_002976.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1502132 gatC 3241952 gatC Staphylococcus epidermidis RP62A aspartyl/glutamyl-tRNA amidotransferase subunit C YP_189008.1 1501830 R 176279 CDS YP_189009.1 57867374 3241953 1502510..1504045 1 NC_002976.3 identified by similarity to GP:2565311; match to protein family HMM PF00474; match to protein family HMM TIGR00813; proline permease 1504045 putP 3241953 putP Staphylococcus epidermidis RP62A proline permease YP_189009.1 1502510 D 176279 CDS YP_189010.1 57867375 3241954 complement(1504373..1505581) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1780; hypothetical protein 1505581 camS 3241954 camS Staphylococcus epidermidis RP62A hypothetical protein YP_189010.1 1504373 R 176279 CDS YP_189011.1 57867376 3241955 complement(1505601..1507598) 1 NC_002976.3 identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent 1507598 ligA 3241955 ligA Staphylococcus epidermidis RP62A DNA ligase, NAD-dependent YP_189011.1 1505601 R 176279 CDS YP_189012.1 57867385 3241189 complement(1507602..1509791) 1 NC_002976.3 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 1509791 pcrA 3241189 pcrA Staphylococcus epidermidis RP62A ATP-dependent DNA helicase PcrA YP_189012.1 1507602 R 176279 CDS YP_189013.1 57867386 3241190 complement(1509788..1510480) 1 NC_002976.3 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein 1510480 3241190 SERP1444 Staphylococcus epidermidis RP62A geranylgeranylglyceryl phosphate synthase-like protein YP_189013.1 1509788 R 176279 CDS YP_189014.1 57867387 3241191 complement(1510804..1511106) 1 NC_002976.3 identified by similarity to OMNI:SA1968; hypothetical protein 1511106 3241191 SERP1445 Staphylococcus epidermidis RP62A hypothetical protein YP_189014.1 1510804 R 176279 CDS YP_189015.1 57867388 3241192 complement(1511231..1512526) 1 NC_002976.3 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1512526 purB 3241192 purB Staphylococcus epidermidis RP62A adenylosuccinate lyase YP_189015.1 1511231 R 176279 CDS YP_189016.1 57867389 3241193 complement(1512938..1513117) 1 NC_002976.3 identified by similarity to EGAD:107605; hypothetical protein 1513117 3241193 SERP1447 Staphylococcus epidermidis RP62A hypothetical protein YP_189016.1 1512938 R 176279 CDS YP_189017.1 57867390 3241194 complement(1513101..1513727) 1 NC_002976.3 identified by similarity to OMNI:SA1973; hypothetical protein 1513727 3241194 SERP1448 Staphylococcus epidermidis RP62A hypothetical protein YP_189017.1 1513101 R 176279 CDS YP_189018.1 57867391 3241195 complement(1513801..1514628) 1 NC_002976.3 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1514628 nadE 3241195 nadE Staphylococcus epidermidis RP62A NAD synthetase YP_189018.1 1513801 R 176279 CDS YP_189019.2 161486706 3241196 complement(1514621..1516090) 1 NC_002976.3 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1516090 3241196 SERP1450 Staphylococcus epidermidis RP62A nicotinate phosphoribosyltransferase YP_189019.2 1514621 R 176279 CDS YP_189020.1 57867401 3241204 1516282..1517349 1 NC_002976.3 identified by match to protein family HMM PF02898; nitric-oxide synthase, oxygenase subunit 1517349 3241204 SERP1451 Staphylococcus epidermidis RP62A nitric-oxide synthase, oxygenase subunit YP_189020.1 1516282 D 176279 CDS YP_189021.1 57867402 3241205 1517368..1518171 1 NC_002976.3 identified by similarity to EGAD:17359; match to protein family HMM PF00800; match to protein family HMM PF01842; prephenate dehydratase 1518171 pheA 3241205 pheA Staphylococcus epidermidis RP62A prephenate dehydratase YP_189021.1 1517368 D 176279 CDS YP_189022.1 57867403 3241206 complement(1518624..1519721) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1794; hypothetical protein 1519721 3241206 SERP1453 Staphylococcus epidermidis RP62A hypothetical protein YP_189022.1 1518624 R 176279 CDS YP_189023.1 57867404 3241207 1519913..1520467 1 NC_002976.3 identified by match to protein family HMM PF00857; isochorismatase 1520467 3241207 SERP1454 Staphylococcus epidermidis RP62A isochorismatase YP_189023.1 1519913 D 176279 CDS YP_189024.1 57867405 3241208 1520522..1521451 1 NC_002976.3 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1521451 ppaC 3241208 ppaC Staphylococcus epidermidis RP62A manganese-dependent inorganic pyrophosphatase YP_189024.1 1520522 D 176279 CDS YP_189025.1 57867406 3241209 1521751..1523130 1 NC_002976.3 identified by similarity to EGAD:18867; match to protein family HMM PF00171; aldehyde dehydrogenase 1523130 aldA-1 3241209 aldA-1 Staphylococcus epidermidis RP62A aldehyde dehydrogenase YP_189025.1 1521751 D 176279 CDS YP_189026.1 57867407 3241211 complement(1523242..1524270) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1798; hypothetical protein 1524270 3241211 SERP1457 Staphylococcus epidermidis RP62A hypothetical protein YP_189026.1 1523242 R 176279 CDS YP_189027.1 57867408 3241212 1524506..1524643 1 NC_002976.3 identified by similarity to OMNI:SA1986; hypothetical protein 1524643 3241212 SERP1458 Staphylococcus epidermidis RP62A hypothetical protein YP_189027.1 1524506 D 176279 CDS YP_189028.1 57867413 3241217 complement(1524695..1525075) 1 NC_002976.3 identified by similarity to EGAD:13370; match to protein family HMM PF03965; penicillinase repressor 1525075 blaI-1 3241217 blaI-1 Staphylococcus epidermidis RP62A penicillinase repressor YP_189028.1 1524695 R 176279 CDS YP_189029.1 57867414 3241218 complement(1525065..1526822) 1 NC_002976.3 identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; regulatory protein BlaR1 1526822 blaR1-1 3241218 blaR1-1 Staphylococcus epidermidis RP62A regulatory protein BlaR1 YP_189029.1 1525065 R 176279 CDS YP_189030.1 57867415 3241219 1526929..1527774 1 NC_002976.3 identified by similarity to SP:P00807; match to protein family HMM PF00144; beta-lactamase 1527774 blaZ-1 3241219 blaZ-1 Staphylococcus epidermidis RP62A beta-lactamase YP_189030.1 1526929 D 176279 CDS YP_189031.1 57867416 3241221 complement(1528541..1529911) 1 NC_002976.3 hypothetical protein 1529911 3241221 SERP1463 Staphylococcus epidermidis RP62A hypothetical protein YP_189031.1 1528541 R 176279 CDS YP_189032.1 57867417 3241222 complement(1529916..1530281) 1 NC_002976.3 identified by similarity to EGAD:6135; Tn554-related, transposase C 1530281 3241222 SERP1464 Staphylococcus epidermidis RP62A Tn554-related, transposase C YP_189032.1 1529916 R 176279 CDS YP_189033.1 57867418 3241223 complement(1530290..1532317) 1 NC_002976.3 identified by similarity to EGAD:8390; match to protein family HMM PF00589; Tn554-related, transposase B 1532317 3241223 SERP1465 Staphylococcus epidermidis RP62A Tn554-related, transposase B YP_189033.1 1530290 R 176279 CDS YP_189034.1 57867419 3241224 complement(1532356..1533468) 1 NC_002976.3 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554-related, transposase A 1533468 3241224 SERP1466 Staphylococcus epidermidis RP62A Tn554-related, transposase A YP_189034.1 1532356 R 176279 CDS YP_189035.1 57867428 3240784 complement(1534168..1534338) 1 NC_002976.3 identified by similarity to OMNI:SA1987; hypothetical protein 1534338 3240784 SERP1468 Staphylococcus epidermidis RP62A hypothetical protein YP_189035.1 1534168 R 176279 CDS YP_189036.1 57867332 3241911 1534718..1535758 1 NC_002976.3 identified by similarity to OMNI:SA1988; hypothetical protein 1535758 3241911 SERP1469 Staphylococcus epidermidis RP62A hypothetical protein YP_189036.1 1534718 D 176279 CDS YP_189037.1 57867333 3241912 complement(1535812..1536648) 1 NC_002976.3 identified by similarity to OMNI:SA1989; hypothetical protein 1536648 3241912 SERP1470 Staphylococcus epidermidis RP62A hypothetical protein YP_189037.1 1535812 R 176279 CDS YP_189038.1 57867334 3241913 complement(1536645..1537202) 1 NC_002976.3 hypothetical protein 1537202 3241913 SERP1471 Staphylococcus epidermidis RP62A hypothetical protein YP_189038.1 1536645 R 176279 CDS YP_189039.1 57867335 3241914 complement(1537255..1537800) 1 NC_002976.3 identified by similarity to OMNI:SA1991; hypothetical protein 1537800 3241914 SERP1472 Staphylococcus epidermidis RP62A hypothetical protein YP_189039.1 1537255 R 176279 CDS YP_189040.1 57867336 3241916 complement(1538530..1539261) 1 NC_002976.3 identified by similarity to OMNI:SA1993; hypothetical protein 1539261 3241916 SERP1474 Staphylococcus epidermidis RP62A hypothetical protein YP_189040.1 1538530 R 176279 CDS YP_189041.1 57867345 3241925 complement(1539261..1540136) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1540136 3241925 SERP1475 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189041.1 1539261 R 176279 CDS YP_189042.1 57867346 3241926 complement(1540154..1540813) 1 NC_002976.3 identified by similarity to OMNI:SA1995; hypothetical protein 1540813 3241926 SERP1476 Staphylococcus epidermidis RP62A hypothetical protein YP_189042.1 1540154 R 176279 CDS YP_189043.1 57867347 3241927 complement(1540794..1541708) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1541708 3241927 SERP1477 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189043.1 1540794 R 176279 CDS YP_189044.1 57867348 3241928 complement(1541708..1542085) 1 NC_002976.3 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1542085 3241928 SERP1478 Staphylococcus epidermidis RP62A GntR family transcriptional regulator YP_189044.1 1541708 R 176279 CDS YP_189045.1 57867349 3241929 complement(1542402..1542572) 1 NC_002976.3 identified by similarity to OMNI:SA1998; hypothetical protein 1542572 3241929 SERP1479 Staphylococcus epidermidis RP62A hypothetical protein YP_189045.1 1542402 R 176279 CDS YP_189046.1 57867350 3241930 complement(1542759..1542854) 1 NC_002976.3 identified by similarity to OMNI:SA1999; hypothetical protein 1542854 3241930 SERP1480 Staphylococcus epidermidis RP62A hypothetical protein YP_189046.1 1542759 R 176279 CDS YP_189047.1 57867351 3241931 1543045..1544334 1 NC_002976.3 hypothetical protein 1544334 3241931 SERP1481 Staphylococcus epidermidis RP62A hypothetical protein YP_189047.1 1543045 D 176279 CDS YP_189048.1 57867352 3241932 complement(1544501..1550422) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; cell wall surface anchor family protein 1550422 3241932 SERP1482 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_189048.1 1544501 R 176279 CDS YP_189049.1 57867362 3241941 complement(1550599..1551672) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein 1551672 3241941 SERP1483 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_189049.1 1550599 R 176279 CDS YP_189050.1 57867363 3241942 complement(1552090..1553709) 1 NC_002976.3 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1553709 groEL 3241942 groEL Staphylococcus epidermidis RP62A molecular chaperone GroEL YP_189050.1 1552090 R 176279 CDS YP_189051.1 57867364 3241943 complement(1553765..1554049) 1 NC_002976.3 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1554049 groES 3241943 groES Staphylococcus epidermidis RP62A co-chaperonin GroES YP_189051.1 1553765 R 176279 CDS YP_189052.1 57867365 3241944 1554224..1554964 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 1554964 3241944 SERP1486 Staphylococcus epidermidis RP62A abortive infection family protein YP_189052.1 1554224 D 176279 CDS YP_189053.1 57867366 3241945 complement(1555024..1556469) 1 NC_002976.3 identified by similarity to GP:8101009; sdrH protein 1556469 sdrH 3241945 sdrH Staphylococcus epidermidis RP62A sdrH protein YP_189053.1 1555024 R 176279 CDS YP_189054.1 57867367 3241946 1556812..1557606 1 NC_002976.3 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1557606 3241946 SERP1488 Staphylococcus epidermidis RP62A carbon-nitrogen family hydrolase YP_189054.1 1556812 D 176279 CDS YP_189055.1 57867843 3240443 complement(1557987..1558064) 1 NC_002976.3 Lyses erythrocytes and other mammalian cells; delta-hemolysin 1558064 hld 3240443 hld Staphylococcus epidermidis RP62A delta-hemolysin YP_189055.1 1557987 R 176279 CDS YP_189056.1 57867368 3241947 1558381..1558965 1 NC_002976.3 identified by similarity to OMNI:SA2023; match to protein family HMM PF04647; accessory gene regulator protein B 1558965 agrB 3241947 agrB Staphylococcus epidermidis RP62A accessory gene regulator protein B YP_189056.1 1558381 D 176279 CDS YP_189057.1 57867369 3241948 1558949..1559089 1 NC_002976.3 identified by similarity to EGAD:18902; accessory gene regulator protein D 1559089 agrD 3241948 agrD Staphylococcus epidermidis RP62A accessory gene regulator protein D YP_189057.1 1558949 D 176279 CDS YP_189058.1 57867377 3241181 1559116..1560405 1 NC_002976.3 identified by similarity to GP:2258296; match to protein family HMM PF02518; accessory gene regulator protein C 1560405 agrC 3241181 agrC Staphylococcus epidermidis RP62A accessory gene regulator protein C YP_189058.1 1559116 D 176279 CDS YP_189059.1 57867378 3241182 1560467..1561138 1 NC_002976.3 identified by similarity to EGAD:16137; match to protein family HMM PF00072; match to protein family HMM PF04397; accessory gene regulator protein A 1561138 agrA 3241182 agrA Staphylococcus epidermidis RP62A accessory gene regulator protein A YP_189059.1 1560467 D 176279 CDS YP_189060.1 57867379 3241183 complement(1561206..1562165) 1 NC_002976.3 identified by match to protein family HMM PF00294; fructokinase 1562165 3241183 SERP1494 Staphylococcus epidermidis RP62A fructokinase YP_189060.1 1561206 R 176279 CDS YP_189061.1 57867380 3241184 complement(1562172..1563644) 1 NC_002976.3 identified by similarity to EGAD:20672; match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase 1563644 cscA 3241184 cscA Staphylococcus epidermidis RP62A sucrose-6-phosphate hydrolase YP_189061.1 1562172 R 176279 CDS YP_189062.1 57867381 3241185 complement(1563810..1563902) 1 NC_002976.3 hypothetical protein 1563902 3241185 SERP1496 Staphylococcus epidermidis RP62A hypothetical protein YP_189062.1 1563810 R 176279 CDS YP_189063.1 57867382 3241186 complement(1563904..1564857) 1 NC_002976.3 identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor 1564857 scrR 3241186 scrR Staphylococcus epidermidis RP62A sucrose operon repressor YP_189063.1 1563904 R 176279 CDS YP_189064.1 57867383 3241187 complement(1564992..1566242) 1 NC_002976.3 identified by similarity to EGAD:19589; match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 1566242 3241187 SERP1498 Staphylococcus epidermidis RP62A ammonium transporter YP_189064.1 1564992 R 176279 CDS YP_189065.1 57867384 3241188 complement(1566662..1566886) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1924; match to protein family HMM PF01206; hypothetical protein 1566886 3241188 SERP1499 Staphylococcus epidermidis RP62A hypothetical protein YP_189065.1 1566662 R 176279 CDS YP_189066.1 57867393 3241210 complement(1567768..1569306) 1 NC_002976.3 identified by similarity to EGAD:107864; match to protein family HMM PF00239; hypothetical protein 1569306 3241210 SERP1501 Staphylococcus epidermidis RP62A hypothetical protein YP_189066.1 1567768 R 176279 CDS YP_189067.1 57867394 3241198 complement(1569296..1569877) 1 NC_002976.3 identified by match to protein family HMM PF00249; DNA-binding protein 1569877 3241198 SERP1502 Staphylococcus epidermidis RP62A DNA-binding protein YP_189067.1 1569296 R 176279 CDS YP_189068.1 57867395 3241199 complement(1569969..1570100) 1 NC_002976.3 hypothetical protein 1570100 3241199 SERP1503 Staphylococcus epidermidis RP62A hypothetical protein YP_189068.1 1569969 R 176279 CDS YP_189069.1 57867396 3240388 complement(1570079..1570684) 1 NC_002976.3 hypothetical protein 1570684 3240388 SERP1504 Staphylococcus epidermidis RP62A hypothetical protein YP_189069.1 1570079 R 176279 CDS YP_189070.1 57867397 3241200 complement(1570656..1571051) 1 NC_002976.3 hypothetical protein 1571051 3241200 SERP1505 Staphylococcus epidermidis RP62A hypothetical protein YP_189070.1 1570656 R 176279 CDS YP_189071.1 57867398 3241201 complement(1571053..1571799) 1 NC_002976.3 identified by similarity to OMNI:NTL01LL0750; hypothetical protein 1571799 3241201 SERP1506 Staphylococcus epidermidis RP62A hypothetical protein YP_189071.1 1571053 R 176279 CDS YP_189072.1 57867399 3241202 complement(1571812..1572051) 1 NC_002976.3 hypothetical protein 1572051 3241202 SERP1507 Staphylococcus epidermidis RP62A hypothetical protein YP_189072.1 1571812 R 176279 CDS YP_189073.1 57867400 3241203 complement(1572067..1572315) 1 NC_002976.3 identified by similarity to EGAD:44482; thioredoxin 1572315 3241203 SERP1508 Staphylococcus epidermidis RP62A thioredoxin YP_189073.1 1572067 R 176279 CDS YP_189074.1 57867409 3241213 complement(1572356..1572958) 1 NC_002976.3 hypothetical protein 1572958 3241213 SERP1509 Staphylococcus epidermidis RP62A hypothetical protein YP_189074.1 1572356 R 176279 CDS YP_189075.1 57867410 3241214 complement(1572986..1574008) 1 NC_002976.3 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1574008 nrdF 3241214 nrdF Staphylococcus epidermidis RP62A ribonucleotide-diphosphate reductase subunit beta YP_189075.1 1572986 R 176279 CDS YP_189076.1 57867411 3241215 complement(1574054..1574317) 1 NC_002976.3 contains an intein; may be nonfunctional due to interuption; truncated ribonucleoside-diphosphate reductase 2 alpha subunit 1574317 3241215 SERP1511 Staphylococcus epidermidis RP62A truncated ribonucleoside-diphosphate reductase 2 alpha subunit YP_189076.1 1574054 R 176279 CDS YP_189077.1 57867412 3241216 complement(1574601..1575425) 1 NC_002976.3 This gene may be part of a small mobile genetic element because it disrupts the gene encoding the alpha subunit of ribonucleoside-diphosphate reductase 2.; identified by match to protein family HMM PF01844; HNH endonuclease 1575425 3241216 SERP1512 Staphylococcus epidermidis RP62A HNH endonuclease YP_189077.1 1574601 R 176279 CDS YP_189078.1 57867420 3241225 complement(1575579..1578488) 1 NC_002976.3 contains a 384 residue intein; identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; may be nonfunctional due to interuption; truncated ribonucleoside-diphosphate reductase 2, alpha subunit 1578488 3241225 SERP1513 Staphylococcus epidermidis RP62A truncated ribonucleoside-diphosphate reductase 2, alpha subunit YP_189078.1 1575579 R 176279 CDS YP_189079.1 57867421 3241226 complement(1578510..1578956) 1 NC_002976.3 hypothetical protein 1578956 3241226 SERP1514 Staphylococcus epidermidis RP62A hypothetical protein YP_189079.1 1578510 R 176279 CDS YP_189080.1 57867422 3240777 complement(1578956..1579369) 1 NC_002976.3 identified by match to protein family HMM PF02555; match to protein family HMM TIGR00333; nrdI protein 1579369 nrdI-2 3240777 nrdI-2 Staphylococcus epidermidis RP62A nrdI protein YP_189080.1 1578956 R 176279 CDS YP_189081.1 57867423 3240778 complement(1579399..1579551) 1 NC_002976.3 hypothetical protein 1579551 3240778 SERP1516 Staphylococcus epidermidis RP62A hypothetical protein YP_189081.1 1579399 R 176279 CDS YP_189082.1 57867424 3240779 complement(1579570..1580271) 1 NC_002976.3 hypothetical protein 1580271 3240779 SERP1517 Staphylococcus epidermidis RP62A hypothetical protein YP_189082.1 1579570 R 176279 CDS YP_189083.1 57867425 3240780 complement(1580283..1580783) 1 NC_002976.3 identified by similarity to GP:2444088; hypothetical protein 1580783 3240780 SERP1518 Staphylococcus epidermidis RP62A hypothetical protein YP_189083.1 1580283 R 176279 CDS YP_189084.1 57867426 3240781 complement(1580918..1581514) 1 NC_002976.3 hypothetical protein 1581514 3240781 SERP1519 Staphylococcus epidermidis RP62A hypothetical protein YP_189084.1 1580918 R 176279 CDS YP_189085.1 57867427 3240782 complement(1581514..1581744) 1 NC_002976.3 hypothetical protein 1581744 3240782 SERP1520 Staphylococcus epidermidis RP62A hypothetical protein YP_189085.1 1581514 R 176279 CDS YP_189086.1 57867435 3240791 complement(1581758..1581940) 1 NC_002976.3 hypothetical protein 1581940 3240791 SERP1521 Staphylococcus epidermidis RP62A hypothetical protein YP_189086.1 1581758 R 176279 CDS YP_189087.1 57867436 3240792 complement(1581943..1582254) 1 NC_002976.3 hypothetical protein 1582254 3240792 SERP1522 Staphylococcus epidermidis RP62A hypothetical protein YP_189087.1 1581943 R 176279 CDS YP_189088.1 57867437 3240793 complement(1582329..1583336) 1 NC_002976.3 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 1583336 3240793 SERP1523 Staphylococcus epidermidis RP62A DNA-cytosine methyltransferase YP_189088.1 1582329 R 176279 CDS YP_189089.1 57867438 3240794 complement(1583342..1584028) 1 NC_002976.3 methyltransferase domain-containing protein 1584028 3240794 SERP1524 Staphylococcus epidermidis RP62A methyltransferase domain-containing protein YP_189089.1 1583342 R 176279 CDS YP_189090.1 57867439 3240795 complement(1584018..1584209) 1 NC_002976.3 hypothetical protein 1584209 3240795 SERP1525 Staphylococcus epidermidis RP62A hypothetical protein YP_189090.1 1584018 R 176279 CDS YP_189091.1 57867440 3240796 complement(1584202..1584813) 1 NC_002976.3 hypothetical protein 1584813 3240796 SERP1526 Staphylococcus epidermidis RP62A hypothetical protein YP_189091.1 1584202 R 176279 CDS YP_189092.1 57867441 3240797 complement(1584828..1585010) 1 NC_002976.3 hypothetical protein 1585010 3240797 SERP1527 Staphylococcus epidermidis RP62A hypothetical protein YP_189092.1 1584828 R 176279 CDS YP_189093.1 57867442 3240798 complement(1585010..1585261) 1 NC_002976.3 hypothetical protein 1585261 3240798 SERP1528 Staphylococcus epidermidis RP62A hypothetical protein YP_189093.1 1585010 R 176279 CDS YP_189094.1 57867443 3240799 complement(1585418..1585591) 1 NC_002976.3 hypothetical protein 1585591 3240799 SERP1529 Staphylococcus epidermidis RP62A hypothetical protein YP_189094.1 1585418 R 176279 CDS YP_189095.1 57867453 3240809 complement(1585572..1585859) 1 NC_002976.3 hypothetical protein 1585859 3240809 SERP1530 Staphylococcus epidermidis RP62A hypothetical protein YP_189095.1 1585572 R 176279 CDS YP_189096.1 57867454 3240810 complement(1585852..1586118) 1 NC_002976.3 hypothetical protein 1586118 3240810 SERP1531 Staphylococcus epidermidis RP62A hypothetical protein YP_189096.1 1585852 R 176279 CDS YP_189097.1 57867455 3240811 complement(1586130..1586303) 1 NC_002976.3 hypothetical protein 1586303 3240811 SERP1532 Staphylococcus epidermidis RP62A hypothetical protein YP_189097.1 1586130 R 176279 CDS YP_189098.1 57867456 3240812 complement(1586417..1586806) 1 NC_002976.3 hypothetical protein 1586806 3240812 SERP1533 Staphylococcus epidermidis RP62A hypothetical protein YP_189098.1 1586417 R 176279 CDS YP_189099.1 57867457 3240813 complement(1586894..1588192) 1 NC_002976.3 identified by match to protein family HMM PF01068; DNA ligase, ATP-dependent 1588192 3240813 SERP1534 Staphylococcus epidermidis RP62A DNA ligase, ATP-dependent YP_189099.1 1586894 R 176279 CDS YP_189100.1 57867458 3240814 complement(1588202..1588516) 1 NC_002976.3 hypothetical protein 1588516 3240814 SERP1535 Staphylococcus epidermidis RP62A hypothetical protein YP_189100.1 1588202 R 176279 CDS YP_189101.1 57867459 3240815 complement(1588654..1589034) 1 NC_002976.3 hypothetical protein 1589034 3240815 SERP1536 Staphylococcus epidermidis RP62A hypothetical protein YP_189101.1 1588654 R 176279 CDS YP_189102.1 57867460 3240816 complement(1589146..1591632) 1 NC_002976.3 DNA polymerase III, alpha subunit 1591632 3240816 SERP1537 Staphylococcus epidermidis RP62A DNA polymerase III, alpha subunit YP_189102.1 1589146 R 176279 CDS YP_189103.1 57867461 3240817 complement(1592095..1593543) 1 NC_002976.3 identified by match to protein family HMM PF02231; match to protein family HMM PF02811; DNA polymerase III, alpha subunit, truncation 1593543 3240817 SERP1538 Staphylococcus epidermidis RP62A DNA polymerase III, alpha subunit, truncation YP_189103.1 1592095 R 176279 CDS YP_189104.1 57867471 3240827 complement(1593556..1593930) 1 NC_002976.3 hypothetical protein 1593930 3240827 SERP1539 Staphylococcus epidermidis RP62A hypothetical protein YP_189104.1 1593556 R 176279 CDS YP_189105.1 57867472 3240828 1594097..1594657 1 NC_002976.3 identified by similarity to GP:11094377; hypothetical protein 1594657 3240828 SERP1540 Staphylococcus epidermidis RP62A hypothetical protein YP_189105.1 1594097 D 176279 CDS YP_189106.1 57867473 3241594 1595010..1595414 1 NC_002976.3 identified by similarity to GP:14020902; hypothetical protein 1595414 3241594 SERP1541 Staphylococcus epidermidis RP62A hypothetical protein YP_189106.1 1595010 D 176279 CDS YP_189107.1 57867474 3241595 1595497..1595631 1 NC_002976.3 hypothetical protein 1595631 3241595 SERP1542 Staphylococcus epidermidis RP62A hypothetical protein YP_189107.1 1595497 D 176279 CDS YP_189108.1 57867475 3241596 complement(1595662..1596303) 1 NC_002976.3 hypothetical protein 1596303 3241596 SERP1543 Staphylococcus epidermidis RP62A hypothetical protein YP_189108.1 1595662 R 176279 CDS YP_189109.1 57867476 3241597 complement(1596409..1597131) 1 NC_002976.3 lipoprotein 1597131 3241597 SERP1544 Staphylococcus epidermidis RP62A lipoprotein YP_189109.1 1596409 R 176279 CDS YP_189110.1 57867477 3241598 complement(1597240..1598040) 1 NC_002976.3 identified by similarity to EGAD:109331; match to protein family HMM PF00149; hypothetical protein 1598040 3241598 SERP1545 Staphylococcus epidermidis RP62A hypothetical protein YP_189110.1 1597240 R 176279 CDS YP_189111.1 57867478 3241599 complement(1598044..1598538) 1 NC_002976.3 hypothetical protein 1598538 3241599 SERP1546 Staphylococcus epidermidis RP62A hypothetical protein YP_189111.1 1598044 R 176279 CDS YP_189112.1 57867479 3241600 complement(1598595..1598864) 1 NC_002976.3 hypothetical protein 1598864 3241600 SERP1547 Staphylococcus epidermidis RP62A hypothetical protein YP_189112.1 1598595 R 176279 CDS YP_189113.1 57867496 3241617 complement(1598848..1599063) 1 NC_002976.3 hypothetical protein 1599063 3241617 SERP1548 Staphylococcus epidermidis RP62A hypothetical protein YP_189113.1 1598848 R 176279 CDS YP_189114.1 57867497 3241618 complement(1599342..1599737) 1 NC_002976.3 identified by similarity to OMNI:NTL03PA00054; match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein 1599737 3241618 SERP1549 Staphylococcus epidermidis RP62A death-on-curing family protein YP_189114.1 1599342 R 176279 CDS YP_189115.1 57867498 3241619 complement(1599737..1599904) 1 NC_002976.3 hypothetical protein 1599904 3241619 SERP1550 Staphylococcus epidermidis RP62A hypothetical protein YP_189115.1 1599737 R 176279 CDS YP_189116.1 57867499 3241620 complement(1599933..1600037) 1 NC_002976.3 hypothetical protein 1600037 3241620 SERP1551 Staphylococcus epidermidis RP62A hypothetical protein YP_189116.1 1599933 R 176279 CDS YP_189117.1 57867500 3241621 complement(1600130..1600648) 1 NC_002976.3 identified by similarity to EGAD:44049; match to protein family HMM PF00149; hypothetical protein 1600648 3241621 SERP1552 Staphylococcus epidermidis RP62A hypothetical protein YP_189117.1 1600130 R 176279 CDS YP_189118.1 57867501 3241622 complement(1600648..1601298) 1 NC_002976.3 hypothetical protein 1601298 3241622 SERP1553 Staphylococcus epidermidis RP62A hypothetical protein YP_189118.1 1600648 R 176279 CDS YP_189119.1 57867429 3240785 complement(1601298..1601618) 1 NC_002976.3 hypothetical protein 1601618 3240785 SERP1554 Staphylococcus epidermidis RP62A hypothetical protein YP_189119.1 1601298 R 176279 CDS YP_189120.1 57867430 3240786 complement(1601608..1602333) 1 NC_002976.3 identified by match to protein family HMM PF00149; serine/threonine protein phosphatase 1602333 3240786 SERP1555 Staphylococcus epidermidis RP62A serine/threonine protein phosphatase YP_189120.1 1601608 R 176279 CDS YP_189121.1 57867431 3240787 complement(1602333..1602554) 1 NC_002976.3 hypothetical protein 1602554 3240787 SERP1556 Staphylococcus epidermidis RP62A hypothetical protein YP_189121.1 1602333 R 176279 CDS YP_189122.1 57867432 3240788 complement(1602574..1602750) 1 NC_002976.3 hypothetical protein 1602750 3240788 SERP1557 Staphylococcus epidermidis RP62A hypothetical protein YP_189122.1 1602574 R 176279 CDS YP_189123.1 57867433 3240789 complement(1602743..1603285) 1 NC_002976.3 identified by similarity to GP:7190132; hypothetical protein 1603285 3240789 SERP1558 Staphylococcus epidermidis RP62A hypothetical protein YP_189123.1 1602743 R 176279 CDS YP_189124.1 57867434 3240790 complement(1603301..1603573) 1 NC_002976.3 hypothetical protein 1603573 3240790 SERP1559 Staphylococcus epidermidis RP62A hypothetical protein YP_189124.1 1603301 R 176279 CDS YP_189125.1 57867444 3240800 complement(1603599..1603754) 1 NC_002976.3 phage transcriptional activator-related protein 1603754 3240800 SERP1560 Staphylococcus epidermidis RP62A phage transcriptional activator-related protein YP_189125.1 1603599 R 176279 CDS YP_189126.1 57867445 3240801 complement(1603751..1604035) 1 NC_002976.3 hypothetical protein 1604035 3240801 SERP1561 Staphylococcus epidermidis RP62A hypothetical protein YP_189126.1 1603751 R 176279 CDS YP_189127.1 57867446 3240802 complement(1604051..1604236) 1 NC_002976.3 hypothetical protein 1604236 3240802 SERP1562 Staphylococcus epidermidis RP62A hypothetical protein YP_189127.1 1604051 R 176279 CDS YP_189128.1 57867447 3240803 complement(1604221..1604400) 1 NC_002976.3 hypothetical protein 1604400 3240803 SERP1563 Staphylococcus epidermidis RP62A hypothetical protein YP_189128.1 1604221 R 176279 CDS YP_189129.1 57867448 3240804 complement(1604416..1604898) 1 NC_002976.3 hypothetical protein 1604898 3240804 SERP1564 Staphylococcus epidermidis RP62A hypothetical protein YP_189129.1 1604416 R 176279 CDS YP_189130.1 57867449 3240805 complement(1605095..1605298) 1 NC_002976.3 hypothetical protein 1605298 3240805 SERP1565 Staphylococcus epidermidis RP62A hypothetical protein YP_189130.1 1605095 R 176279 CDS YP_189131.1 57867450 3240806 complement(1605303..1605569) 1 NC_002976.3 hypothetical protein 1605569 3240806 SERP1566 Staphylococcus epidermidis RP62A hypothetical protein YP_189131.1 1605303 R 176279 CDS YP_189132.1 57867451 3240807 complement(1605591..1605866) 1 NC_002976.3 identified by similarity to EGAD:101508; hypothetical protein 1605866 3240807 SERP1567 Staphylococcus epidermidis RP62A hypothetical protein YP_189132.1 1605591 R 176279 CDS YP_189133.1 57867452 3240808 complement(1605889..1606128) 1 NC_002976.3 identified by similarity to OMNI:NTL02SA1984; hypothetical protein 1606128 3240808 SERP1568 Staphylococcus epidermidis RP62A hypothetical protein YP_189133.1 1605889 R 176279 CDS YP_189134.1 57867462 3240818 complement(1606150..1606374) 1 NC_002976.3 hypothetical protein 1606374 3240818 SERP1569 Staphylococcus epidermidis RP62A hypothetical protein YP_189134.1 1606150 R 176279 CDS YP_189135.1 57867463 3240819 complement(1606380..1606727) 1 NC_002976.3 identified by match to protein family HMM PF00565; nuclease 1606727 3240819 SERP1570 Staphylococcus epidermidis RP62A nuclease YP_189135.1 1606380 R 176279 CDS YP_189136.1 57867464 3240820 complement(1606724..1607134) 1 NC_002976.3 identified by similarity to GP:5001708; hypothetical protein 1607134 3240820 SERP1571 Staphylococcus epidermidis RP62A hypothetical protein YP_189136.1 1606724 R 176279 CDS YP_189137.1 57867465 3240821 complement(1607174..1607437) 1 NC_002976.3 identified by similarity to GP:2765130; hypothetical protein 1607437 3240821 SERP1572 Staphylococcus epidermidis RP62A hypothetical protein YP_189137.1 1607174 R 176279 CDS YP_189138.1 57867466 3240822 complement(1607440..1607748) 1 NC_002976.3 hypothetical protein 1607748 3240822 SERP1573 Staphylococcus epidermidis RP62A hypothetical protein YP_189138.1 1607440 R 176279 CDS YP_189139.1 57867467 3240823 complement(1607754..1607864) 1 NC_002976.3 identified by similarity to OMNI:SA0352; hypothetical protein 1607864 3240823 SERP1574 Staphylococcus epidermidis RP62A hypothetical protein YP_189139.1 1607754 R 176279 CDS YP_189140.1 57867468 3240824 complement(1607845..1607967) 1 NC_002976.3 hypothetical protein 1607967 3240824 SERP1575 Staphylococcus epidermidis RP62A hypothetical protein YP_189140.1 1607845 R 176279 CDS YP_189141.1 57867469 3240825 complement(1608040..1608315) 1 NC_002976.3 hypothetical protein 1608315 3240825 SERP1576 Staphylococcus epidermidis RP62A hypothetical protein YP_189141.1 1608040 R 176279 CDS YP_189142.1 57867470 3240826 complement(1608328..1608525) 1 NC_002976.3 hypothetical protein 1608525 3240826 SERP1577 Staphylococcus epidermidis RP62A hypothetical protein YP_189142.1 1608328 R 176279 CDS YP_189143.1 57867480 3241601 complement(1608536..1609375) 1 NC_002976.3 identified by similarity to EGAD:74104; hypothetical protein 1609375 3241601 SERP1578 Staphylococcus epidermidis RP62A hypothetical protein YP_189143.1 1608536 R 176279 CDS YP_189144.1 57867481 3241602 1609626..1610300 1 NC_002976.3 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 1610300 3241602 SERP1579 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_189144.1 1609626 D 176279 CDS YP_189145.1 57867482 3241603 complement(1610332..1610754) 1 NC_002976.3 hypothetical protein 1610754 3241603 SERP1580 Staphylococcus epidermidis RP62A hypothetical protein YP_189145.1 1610332 R 176279 CDS YP_189146.1 57867483 3241604 complement(1610764..1611249) 1 NC_002976.3 identified by similarity to EGAD:43004; match to protein family HMM PF00186; dihydrofolate reductase 1611249 folA-2 3241604 folA-2 Staphylococcus epidermidis RP62A dihydrofolate reductase YP_189146.1 1610764 R 176279 CDS YP_189147.1 57867484 3241605 complement(1611291..1612247) 1 NC_002976.3 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1612247 thyA 3241605 thyA Staphylococcus epidermidis RP62A thymidylate synthase YP_189147.1 1611291 R 176279 CDS YP_189148.1 57867485 3241606 1612361..1612684 1 NC_002976.3 identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption; IS431mec-like transposase 1612684 3241606 SERP1583 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_189148.1 1612361 D 176279 CDS YP_189149.1 57867486 3241607 1612762..1613934 1 NC_002976.3 identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 1613934 3241607 SERP1584 Staphylococcus epidermidis RP62A IS256-like transposase YP_189149.1 1612762 D 176279 CDS YP_189150.1 57867487 3241608 complement(1614064..1615503) 1 NC_002976.3 identified by similarity to EGAD:8514; match to protein family HMM PF00583; match to protein family HMM PF01636; 6'-aminoglycoside N-acetyltransferase 1615503 aacA 3241608 aacA Staphylococcus epidermidis RP62A 6'-aminoglycoside N-acetyltransferase YP_189150.1 1614064 R 176279 CDS YP_189151.1 57867488 3241609 complement(1615504..1615896) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1615896 3241609 SERP1586 Staphylococcus epidermidis RP62A acetyltransferase YP_189151.1 1615504 R 176279 CDS YP_189152.1 57867489 3241610 complement(1615953..1617125) 1 NC_002976.3 identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 1617125 3241610 SERP1587 Staphylococcus epidermidis RP62A IS256-like transposase YP_189152.1 1615953 R 176279 CDS YP_189153.1 57867490 3241611 1617188..1617610 1 NC_002976.3 identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption; IS431mec-like transposase 1617610 3241611 SERP1588 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_189153.1 1617188 D 176279 CDS YP_189154.1 57867491 3241612 complement(1617909..1618646) 1 NC_002976.3 hypothetical protein 1618646 3241612 SERP1589 Staphylococcus epidermidis RP62A hypothetical protein YP_189154.1 1617909 R 176279 CDS YP_189155.1 57867492 3241613 complement(1618839..1620605) 1 NC_002976.3 identified by match to protein family HMM PF01368; single-stranded-DNA-specific exonuclease RecJ 1620605 3241613 SERP1590 Staphylococcus epidermidis RP62A single-stranded-DNA-specific exonuclease RecJ YP_189155.1 1618839 R 176279 CDS YP_189156.1 57867493 3241614 complement(1620608..1621720) 1 NC_002976.3 identified by similarity to EGAD:107455; hypothetical protein 1621720 3241614 SERP1591 Staphylococcus epidermidis RP62A hypothetical protein YP_189156.1 1620608 R 176279 CDS YP_189157.1 57867494 3241615 complement(1621737..1623269) 1 NC_002976.3 identified by similarity to EGAD:107457; hypothetical protein 1623269 3241615 SERP1592 Staphylococcus epidermidis RP62A hypothetical protein YP_189157.1 1621737 R 176279 CDS YP_189158.1 57867495 3241616 complement(1623291..1623809) 1 NC_002976.3 identified by similarity to EGAD:107458; hypothetical protein 1623809 3241616 SERP1593 Staphylococcus epidermidis RP62A hypothetical protein YP_189158.1 1623291 R 176279 CDS YP_189159.1 57867505 3241626 complement(1623886..1624854) 1 NC_002976.3 identified by similarity to EGAD:107459; hypothetical protein 1624854 3241626 SERP1594 Staphylococcus epidermidis RP62A hypothetical protein YP_189159.1 1623886 R 176279 CDS YP_189160.1 57867506 3241627 complement(1624978..1625937) 1 NC_002976.3 identified by similarity to EGAD:107460; hypothetical protein 1625937 3241627 SERP1595 Staphylococcus epidermidis RP62A hypothetical protein YP_189160.1 1624978 R 176279 CDS YP_189161.1 57867507 3241628 complement(1625981..1626661) 1 NC_002976.3 hypothetical protein 1626661 3241628 SERP1596 Staphylococcus epidermidis RP62A hypothetical protein YP_189161.1 1625981 R 176279 CDS YP_189162.1 57867508 3241629 complement(1626679..1627167) 1 NC_002976.3 hypothetical protein 1627167 3241629 SERP1597 Staphylococcus epidermidis RP62A hypothetical protein YP_189162.1 1626679 R 176279 CDS YP_189163.1 57867509 3241630 complement(1627183..1627476) 1 NC_002976.3 hypothetical protein 1627476 3241630 SERP1598 Staphylococcus epidermidis RP62A hypothetical protein YP_189163.1 1627183 R 176279 CDS YP_189164.1 57867510 3241631 complement(1627591..1628595) 1 NC_002976.3 hypothetical protein 1628595 3241631 SERP1599 Staphylococcus epidermidis RP62A hypothetical protein YP_189164.1 1627591 R 176279 CDS YP_189165.1 57867511 3241632 complement(1628607..1629887) 1 NC_002976.3 hypothetical protein 1629887 3241632 SERP1600 Staphylococcus epidermidis RP62A hypothetical protein YP_189165.1 1628607 R 176279 CDS YP_189166.1 57867512 3241633 complement(1630198..1631241) 1 NC_002976.3 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 1631241 3241633 SERP1601 Staphylococcus epidermidis RP62A phage integrase family site specific recombinase YP_189166.1 1630198 R 176279 CDS YP_189167.1 57867513 3241634 complement(1631834..1631941) 1 NC_002976.3 hypothetical protein 1631941 3241634 SERP1602 Staphylococcus epidermidis RP62A hypothetical protein YP_189167.1 1631834 R 176279 CDS YP_189168.1 57867523 3241644 complement(1631925..1632353) 1 NC_002976.3 hypothetical protein 1632353 3241644 SERP1603 Staphylococcus epidermidis RP62A hypothetical protein YP_189168.1 1631925 R 176279 CDS YP_189169.1 57867524 3241645 complement(1632431..1632952) 1 NC_002976.3 hypothetical protein 1632952 3241645 SERP1604 Staphylococcus epidermidis RP62A hypothetical protein YP_189169.1 1632431 R 176279 CDS YP_189170.1 57867525 3241646 complement(1632952..1633404) 1 NC_002976.3 identified by similarity to GP:9944577; hypothetical protein 1633404 3241646 SERP1605 Staphylococcus epidermidis RP62A hypothetical protein YP_189170.1 1632952 R 176279 CDS YP_189171.1 57867526 3240472 complement(1633520..1634200) 1 NC_002976.3 hypothetical protein 1634200 3240472 SERP1606 Staphylococcus epidermidis RP62A hypothetical protein YP_189171.1 1633520 R 176279 CDS YP_189172.1 57867527 3240473 complement(1634229..1634492) 1 NC_002976.3 hypothetical protein 1634492 3240473 SERP1607 Staphylococcus epidermidis RP62A hypothetical protein YP_189172.1 1634229 R 176279 CDS YP_189173.1 57867528 3240474 complement(1634585..1634908) 1 NC_002976.3 identified by similarity to GP:14325470; hypothetical protein 1634908 3240474 SERP1608 Staphylococcus epidermidis RP62A hypothetical protein YP_189173.1 1634585 R 176279 CDS YP_189174.1 57867529 3240475 complement(1634953..1635612) 1 NC_002976.3 identified by similarity to OMNI:EF1882; hypothetical protein 1635612 3240475 SERP1609 Staphylococcus epidermidis RP62A hypothetical protein YP_189174.1 1634953 R 176279 CDS YP_189175.1 57867530 3240476 complement(1635765..1636154) 1 NC_002976.3 identified by similarity to OMNI:NTL01SPL1390; hypothetical protein 1636154 3240476 SERP1610 Staphylococcus epidermidis RP62A hypothetical protein YP_189175.1 1635765 R 176279 CDS YP_189176.1 57867531 3240579 complement(1636291..1636551) 1 NC_002976.3 hypothetical protein 1636551 3240579 SERP1611 Staphylococcus epidermidis RP62A hypothetical protein YP_189176.1 1636291 R 176279 CDS YP_189177.1 57867541 3240589 complement(1636626..1636841) 1 NC_002976.3 hypothetical protein 1636841 3240589 SERP1612 Staphylococcus epidermidis RP62A hypothetical protein YP_189177.1 1636626 R 176279 CDS YP_189178.1 57867542 3240590 complement(1636893..1637006) 1 NC_002976.3 hypothetical protein 1637006 3240590 SERP1613 Staphylococcus epidermidis RP62A hypothetical protein YP_189178.1 1636893 R 176279 CDS YP_189179.1 57867543 3240591 complement(1637021..1637305) 1 NC_002976.3 hypothetical protein 1637305 3240591 SERP1614 Staphylococcus epidermidis RP62A hypothetical protein YP_189179.1 1637021 R 176279 CDS YP_189180.1 57867544 3240592 complement(1638658..1638819) 1 NC_002976.3 hypothetical protein 1638819 3240592 SERP1615 Staphylococcus epidermidis RP62A hypothetical protein YP_189180.1 1638658 R 176279 CDS YP_189181.1 57867545 3240593 complement(1639084..1639341) 1 NC_002976.3 hypothetical protein 1639341 3240593 SERP1616 Staphylococcus epidermidis RP62A hypothetical protein YP_189181.1 1639084 R 176279 CDS YP_189182.1 57867546 3240594 1640612..1640752 1 NC_002976.3 hypothetical protein 1640752 3240594 SERP1617 Staphylococcus epidermidis RP62A hypothetical protein YP_189182.1 1640612 D 176279 CDS YP_189183.1 57867547 3240595 complement(1641200..1642075) 1 NC_002976.3 hypothetical protein 1642075 3240595 SERP1618 Staphylococcus epidermidis RP62A hypothetical protein YP_189183.1 1641200 R 176279 CDS YP_189184.1 57867548 3240596 complement(1642111..1644396) 1 NC_002976.3 identified by similarity to OMNI:NTL01SPL1451; hypothetical protein 1644396 3240596 SERP1619 Staphylococcus epidermidis RP62A hypothetical protein YP_189184.1 1642111 R 176279 CDS YP_189185.1 57867549 3240597 1644532..1646028 1 NC_002976.3 hypothetical protein 1646028 3240597 SERP1620 Staphylococcus epidermidis RP62A hypothetical protein YP_189185.1 1644532 D 176279 CDS YP_189186.1 57867550 3240598 1646288..1646617 1 NC_002976.3 identified by similarity to EGAD:8587; match to protein family HMM PF00216; DNA-binding protein HU 1646617 3240598 SERP1621 Staphylococcus epidermidis RP62A DNA-binding protein HU YP_189186.1 1646288 D 176279 CDS YP_189187.1 57867559 3240607 1646643..1646828 1 NC_002976.3 identified by similarity to EGAD:107767; hypothetical protein 1646828 3240607 SERP1622 Staphylococcus epidermidis RP62A hypothetical protein YP_189187.1 1646643 D 176279 CDS YP_189188.1 57867560 3240608 1646837..1648021 1 NC_002976.3 identified by similarity to EGAD:107768; hypothetical protein 1648021 3240608 SERP1623 Staphylococcus epidermidis RP62A hypothetical protein YP_189188.1 1646837 D 176279 CDS YP_189189.1 57867561 3240609 1649716..1650600 1 NC_002976.3 identified by similarity to EGAD:107771; hypothetical protein 1650600 3240609 SERP1624 Staphylococcus epidermidis RP62A hypothetical protein YP_189189.1 1649716 D 176279 CDS YP_189190.1 57867562 3240610 1650593..1652392 1 NC_002976.3 identified by similarity to EGAD:73596; prophage, terminase, ATPase subunit 1652392 3240610 SERP1625 Staphylococcus epidermidis RP62A prophage, terminase, ATPase subunit YP_189190.1 1650593 D 176279 CDS YP_189191.1 57867563 3240611 1652410..1653972 1 NC_002976.3 hypothetical protein 1653972 3240611 SERP1626 Staphylococcus epidermidis RP62A hypothetical protein YP_189191.1 1652410 D 176279 CDS YP_189192.1 57867564 3240612 1653965..1655344 1 NC_002976.3 hypothetical protein 1655344 3240612 SERP1627 Staphylococcus epidermidis RP62A hypothetical protein YP_189192.1 1653965 D 176279 CDS YP_189193.1 57867565 3240613 1655372..1655812 1 NC_002976.3 hypothetical protein 1655812 3240613 SERP1628 Staphylococcus epidermidis RP62A hypothetical protein YP_189193.1 1655372 D 176279 CDS YP_189194.1 57867566 3240614 1655851..1656852 1 NC_002976.3 hypothetical protein 1656852 3240614 SERP1629 Staphylococcus epidermidis RP62A hypothetical protein YP_189194.1 1655851 D 176279 CDS YP_189195.1 57867567 3240615 1656927..1657478 1 NC_002976.3 hypothetical protein 1657478 3240615 SERP1630 Staphylococcus epidermidis RP62A hypothetical protein YP_189195.1 1656927 D 176279 CDS YP_189196.1 57867575 3240623 1657496..1657930 1 NC_002976.3 hypothetical protein 1657930 3240623 SERP1631 Staphylococcus epidermidis RP62A hypothetical protein YP_189196.1 1657496 D 176279 CDS YP_189197.1 57867576 3240624 1657920..1658237 1 NC_002976.3 hypothetical protein 1658237 3240624 SERP1632 Staphylococcus epidermidis RP62A hypothetical protein YP_189197.1 1657920 D 176279 CDS YP_189198.1 57867577 3240625 1658241..1658906 1 NC_002976.3 hypothetical protein 1658906 3240625 SERP1633 Staphylococcus epidermidis RP62A hypothetical protein YP_189198.1 1658241 D 176279 CDS YP_189199.1 57867578 3240626 1658896..1659417 1 NC_002976.3 identified by similarity to EGAD:107781; hypothetical protein 1659417 3240626 SERP1634 Staphylococcus epidermidis RP62A hypothetical protein YP_189199.1 1658896 D 176279 CDS YP_189200.1 57867579 3242692 1659423..1660295 1 NC_002976.3 identified by similarity to EGAD:107782; hypothetical protein 1660295 3242692 SERP1635 Staphylococcus epidermidis RP62A hypothetical protein YP_189200.1 1659423 D 176279 CDS YP_189201.1 57867580 3242693 1660334..1661125 1 NC_002976.3 identified by similarity to EGAD:107783; hypothetical protein 1661125 3242693 SERP1636 Staphylococcus epidermidis RP62A hypothetical protein YP_189201.1 1660334 D 176279 CDS YP_189202.1 57867581 3242694 1661209..1661766 1 NC_002976.3 hypothetical protein 1661766 3242694 SERP1637 Staphylococcus epidermidis RP62A hypothetical protein YP_189202.1 1661209 D 176279 CDS YP_189203.1 57867502 3241623 1661766..1662239 1 NC_002976.3 hypothetical protein 1662239 3241623 SERP1638 Staphylococcus epidermidis RP62A hypothetical protein YP_189203.1 1661766 D 176279 CDS YP_189204.1 57867503 3241624 1662255..1663271 1 NC_002976.3 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 1663271 3241624 SERP1639 Staphylococcus epidermidis RP62A phage integrase family site specific recombinase YP_189204.1 1662255 D 176279 CDS YP_189205.1 57867504 3241625 1663368..1671641 1 NC_002976.3 identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760; M23/M37 peptidase domain-containing protein 1671641 3241625 SERP1640 Staphylococcus epidermidis RP62A M23/M37 peptidase domain-containing protein YP_189205.1 1663368 D 176279 CDS YP_189206.1 57867514 3241635 1671663..1673744 1 NC_002976.3 hypothetical protein 1673744 3241635 SERP1641 Staphylococcus epidermidis RP62A hypothetical protein YP_189206.1 1671663 D 176279 CDS YP_189207.1 57867515 3241636 1673805..1681850 1 NC_002976.3 hypothetical protein 1681850 3241636 SERP1642 Staphylococcus epidermidis RP62A hypothetical protein YP_189207.1 1673805 D 176279 CDS YP_189208.1 57867516 3241637 1681853..1682227 1 NC_002976.3 hypothetical protein 1682227 3241637 SERP1643 Staphylococcus epidermidis RP62A hypothetical protein YP_189208.1 1681853 D 176279 CDS YP_189209.1 57867517 3241638 1682220..1682387 1 NC_002976.3 hypothetical protein 1682387 3241638 SERP1644 Staphylococcus epidermidis RP62A hypothetical protein YP_189209.1 1682220 D 176279 CDS YP_189210.1 57867518 3241639 1682429..1685098 1 NC_002976.3 identified by similarity to OMNI:NTL02SA1962; hypothetical protein 1685098 3241639 SERP1645 Staphylococcus epidermidis RP62A hypothetical protein YP_189210.1 1682429 D 176279 CDS YP_189211.1 57867519 3241640 1685145..1685606 1 NC_002976.3 hypothetical protein 1685606 3241640 SERP1646 Staphylococcus epidermidis RP62A hypothetical protein YP_189211.1 1685145 D 176279 CDS YP_189212.1 57867520 3241641 1685588..1686100 1 NC_002976.3 hypothetical protein 1686100 3241641 SERP1647 Staphylococcus epidermidis RP62A hypothetical protein YP_189212.1 1685588 D 176279 CDS YP_189213.1 57867521 3241642 1686122..1686451 1 NC_002976.3 identified by similarity to EGAD:18887; match to protein family HMM PF04688; match to protein family HMM TIGR01592; prophage, holin 1686451 xhlB 3241642 xhlB Staphylococcus epidermidis RP62A prophage, holin YP_189213.1 1686122 D 176279 CDS YP_189214.1 57867522 3241643 1686503..1688896 1 NC_002976.3 identified by match to protein family HMM PF00657; lipase/acylhydrolase domain-containing protein 1688896 3241643 SERP1649 Staphylococcus epidermidis RP62A lipase/acylhydrolase domain-containing protein YP_189214.1 1686503 D 176279 CDS YP_189215.1 57867532 3240580 1689084..1690475 1 NC_002976.3 identified by match to protein family HMM PF01520; match to protein family HMM PF05257; prophage, amidase 1690475 3240580 SERP1650 Staphylococcus epidermidis RP62A prophage, amidase YP_189215.1 1689084 D 176279 CDS YP_189216.1 57867533 3240581 complement(1690551..1690751) 1 NC_002976.3 hypothetical protein 1690751 3240581 SERP1651 Staphylococcus epidermidis RP62A hypothetical protein YP_189216.1 1690551 R 176279 CDS YP_189217.1 57867534 3240582 complement(1691131..1691307) 1 NC_002976.3 hypothetical protein 1691307 3240582 SERP1652 Staphylococcus epidermidis RP62A hypothetical protein YP_189217.1 1691131 R 176279 CDS YP_189218.1 57867535 3240583 complement(1691446..1693092) 1 NC_002976.3 hypothetical protein 1693092 3240583 SERP1653 Staphylococcus epidermidis RP62A hypothetical protein YP_189218.1 1691446 R 176279 CDS YP_189219.1 57867536 3240584 complement(1693235..1693840) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein 1693840 3240584 SERP1654 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_189219.1 1693235 R 176279 CDS YP_189220.1 57867537 3240585 complement(1694146..1694457) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1925; hypothetical protein 1694457 3240585 SERP1655 Staphylococcus epidermidis RP62A hypothetical protein YP_189220.1 1694146 R 176279 CDS YP_189221.1 57867538 3240586 complement(1694543..1694824) 1 NC_002976.3 hypothetical protein 1694824 3240586 SERP1656 Staphylococcus epidermidis RP62A hypothetical protein YP_189221.1 1694543 R 176279 CDS YP_189222.1 57867539 3240587 complement(1694970..1695605) 1 NC_002976.3 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1695605 3240587 SERP1657 Staphylococcus epidermidis RP62A redox-sensing transcriptional repressor Rex YP_189222.1 1694970 R 176279 CDS YP_189223.1 57867540 3240588 1695953..1697887 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1697887 3240588 SERP1658 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189223.1 1695953 D 176279 CDS YP_189224.1 57867551 3240599 complement(1698060..1698167) 1 NC_002976.3 hypothetical protein 1698167 3240599 SERP1659 Staphylococcus epidermidis RP62A hypothetical protein YP_189224.1 1698060 R 176279 CDS YP_189225.1 57867552 3240600 1698229..1699845 1 NC_002976.3 identified by match to protein family HMM PF00488; MutS family protein 1699845 3240600 SERP1660 Staphylococcus epidermidis RP62A MutS family protein YP_189225.1 1698229 D 176279 CDS YP_189226.1 57867553 3240601 complement(1699928..1700950) 1 NC_002976.3 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1700950 3240601 SERP1661 Staphylococcus epidermidis RP62A DNA-binding/iron metalloprotein/AP endonuclease YP_189226.1 1699928 R 176279 CDS YP_189227.1 57867554 3240602 complement(1700947..1701384) 1 NC_002976.3 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 1701384 3240602 SERP1662 Staphylococcus epidermidis RP62A ribosomal-protein-alanine acetyltransferase YP_189227.1 1700947 R 176279 CDS YP_189228.1 57867555 3240603 complement(1701381..1702043) 1 NC_002976.3 identified by match to protein family HMM PF00814; hypothetical protein 1702043 3240603 SERP1663 Staphylococcus epidermidis RP62A hypothetical protein YP_189228.1 1701381 R 176279 CDS YP_189229.1 57867556 3240604 complement(1702024..1702485) 1 NC_002976.3 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1702485 3240604 SERP1664 Staphylococcus epidermidis RP62A hypothetical protein YP_189229.1 1702024 R 176279 CDS YP_189230.1 57867557 3240605 1702964..1704652 1 NC_002976.3 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1704652 ilvD 3240605 ilvD Staphylococcus epidermidis RP62A dihydroxy-acid dehydratase YP_189230.1 1702964 D 176279 CDS YP_189231.1 57867558 3240606 1704708..1706411 1 NC_002976.3 identified by similarity to SP:P37251; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase, large subunit, biosynthetic type 1706411 ilvB 3240606 ilvB Staphylococcus epidermidis RP62A acetolactate synthase, large subunit, biosynthetic type YP_189231.1 1704708 D 176279 CDS YP_189232.1 57867568 3240616 1706411..1706644 1 NC_002976.3 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small; acetolactate synthase 1 regulatory subunit 1706644 3240616 SERP1667 Staphylococcus epidermidis RP62A acetolactate synthase 1 regulatory subunit YP_189232.1 1706411 D 176279 CDS YP_189233.1 57867569 3240617 1706761..1707765 1 NC_002976.3 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1707765 ilvC 3240617 ilvC Staphylococcus epidermidis RP62A ketol-acid reductoisomerase YP_189233.1 1706761 D 176279 CDS YP_189234.1 57867570 3240618 1707788..1709323 1 NC_002976.3 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1709323 leuA 3240618 leuA Staphylococcus epidermidis RP62A 2-isopropylmalate synthase YP_189234.1 1707788 D 176279 CDS YP_189235.1 57867571 3240619 1709320..1710363 1 NC_002976.3 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1710363 leuB 3240619 leuB Staphylococcus epidermidis RP62A 3-isopropylmalate dehydrogenase YP_189235.1 1709320 D 176279 CDS YP_189236.1 57867572 3240620 1710379..1711749 1 NC_002976.3 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1711749 leuC 3240620 leuC Staphylococcus epidermidis RP62A isopropylmalate isomerase large subunit YP_189236.1 1710379 D 176279 CDS YP_189237.1 57867573 3240621 1711750..1712319 1 NC_002976.3 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1712319 leuD 3240621 leuD Staphylococcus epidermidis RP62A isopropylmalate isomerase small subunit YP_189237.1 1711750 D 176279 CDS YP_189238.1 57867574 3240622 1712334..1713602 1 NC_002976.3 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 1713602 ilvA 3240622 ilvA Staphylococcus epidermidis RP62A threonine dehydratase YP_189238.1 1712334 D 176279 CDS YP_189239.1 57867584 3242697 complement(1713700..1713810) 1 NC_002976.3 hypothetical protein 1713810 3242697 SERP1674 Staphylococcus epidermidis RP62A hypothetical protein YP_189239.1 1713700 R 176279 CDS YP_189240.1 57867585 3242698 complement(1719919..1720374) 1 NC_002976.3 identified by match to protein family HMM PF03926; hypothetical protein 1720374 3242698 SERP1675 Staphylococcus epidermidis RP62A hypothetical protein YP_189240.1 1719919 R 176279 CDS YP_189241.1 57867586 3242699 complement(1720367..1722517) 1 NC_002976.3 identified by similarity to EGAD:101821; match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 1722517 3242699 SERP1676 Staphylococcus epidermidis RP62A S1 RNA-binding domain-containing protein YP_189241.1 1720367 R 176279 CDS YP_189242.1 57867587 3242700 complement(1722805..1723575) 1 NC_002976.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 1723575 rpoF 3242700 rpoF Staphylococcus epidermidis RP62A RNA polymerase sigma factor SigB YP_189242.1 1722805 R 176279 CDS YP_189243.1 57867588 3242701 complement(1723550..1724029) 1 NC_002976.3 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 1724029 rsbW 3242701 rsbW Staphylococcus epidermidis RP62A serine-protein kinase RsbW YP_189243.1 1723550 R 176279 CDS YP_189244.1 57867589 3242702 complement(1724031..1724357) 1 NC_002976.3 identified by similarity to EGAD:18426; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor RsbV 1724357 rsbV 3242702 rsbV Staphylococcus epidermidis RP62A anti-anti-sigma factor RsbV YP_189244.1 1724031 R 176279 CDS YP_189245.1 57867590 3242703 complement(1724457..1725458) 1 NC_002976.3 identified by similarity to GP:1729794; sigma factor B regulator protein 1725458 rsbU 3242703 rsbU Staphylococcus epidermidis RP62A sigma factor B regulator protein YP_189245.1 1724457 R 176279 CDS YP_189246.1 57867591 3242704 complement(1725803..1726165) 1 NC_002976.3 identified by match to protein family HMM PF02452; PemK family transcriptional regulator 1726165 3242704 SERP1681 Staphylococcus epidermidis RP62A PemK family transcriptional regulator YP_189246.1 1725803 R 176279 CDS YP_189247.1 57867599 3242712 complement(1726162..1726332) 1 NC_002976.3 identified by similarity to OMNI:SA2059; hypothetical protein 1726332 3242712 SERP1682 Staphylococcus epidermidis RP62A hypothetical protein YP_189247.1 1726162 R 176279 CDS YP_189248.1 57867600 3242713 complement(1726419..1727567) 1 NC_002976.3 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1727567 alr 3242713 alr Staphylococcus epidermidis RP62A alanine racemase YP_189248.1 1726419 R 176279 CDS YP_189249.1 57867601 3242714 complement(1727634..1727987) 1 NC_002976.3 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1727987 acpS 3242714 acpS Staphylococcus epidermidis RP62A 4'-phosphopantetheinyl transferase YP_189249.1 1727634 R 176279 CDS YP_189250.1 57867602 3242715 complement(1728035..1728544) 1 NC_002976.3 identified by match to protein family HMM PF03703; hypothetical protein 1728544 3242715 SERP1685 Staphylococcus epidermidis RP62A hypothetical protein YP_189250.1 1728035 R 176279 CDS YP_189251.1 57867603 3242716 complement(1728531..1730036) 1 NC_002976.3 identified by match to protein family HMM PF03703; hypothetical protein 1730036 3242716 SERP1686 Staphylococcus epidermidis RP62A hypothetical protein YP_189251.1 1728531 R 176279 CDS YP_189252.1 57867604 3242717 complement(1730029..1730508) 1 NC_002976.3 identified by match to protein family HMM PF03703; hypothetical protein 1730508 3242717 SERP1687 Staphylococcus epidermidis RP62A hypothetical protein YP_189252.1 1730029 R 176279 CDS YP_189253.1 57867605 3242718 complement(1730758..1732287) 1 NC_002976.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase 1732287 3242718 SERP1688 Staphylococcus epidermidis RP62A DEAD-box ATP dependent DNA helicase YP_189253.1 1730758 R 176279 CDS YP_189254.1 57867606 3242719 complement(1732587..1733942) 1 NC_002976.3 identified by similarity to EGAD:108108; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1733942 murF 3242719 murF Staphylococcus epidermidis RP62A UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_189254.1 1732587 R 176279 CDS YP_189255.1 57867614 3242727 complement(1733954..1735027) 1 NC_002976.3 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1735027 ddl 3242727 ddl Staphylococcus epidermidis RP62A D-alanyl-alanine synthetase A YP_189255.1 1733954 R 176279 CDS YP_189256.1 57867615 3242728 1735418..1736629 1 NC_002976.3 identified by match to protein family HMM PF01098; cell cycle protein FtsW 1736629 3242728 SERP1691 Staphylococcus epidermidis RP62A cell cycle protein FtsW YP_189256.1 1735418 D 176279 CDS YP_189257.1 57867616 3242729 complement(1736728..1736865) 1 NC_002976.3 identified by similarity to OMNI:SA2076; hypothetical protein 1736865 3242729 SERP1692 Staphylococcus epidermidis RP62A hypothetical protein YP_189257.1 1736728 R 176279 CDS YP_189258.1 57867617 3242730 complement(1737008..1737217) 1 NC_002976.3 identified by similarity to OMNI:SA2077; hypothetical protein 1737217 3242730 SERP1693 Staphylococcus epidermidis RP62A hypothetical protein YP_189258.1 1737008 R 176279 CDS YP_189259.1 57867618 3242731 complement(1737224..1737517) 1 NC_002976.3 identified by similarity to OMNI:SA2078; match to protein family HMM PF02583; hypothetical protein 1737517 3242731 SERP1694 Staphylococcus epidermidis RP62A hypothetical protein YP_189259.1 1737224 R 176279 CDS YP_189260.1 57867619 3242732 1737709..1739175 1 NC_002976.3 identified by match to protein family HMM PF00614; cardiolipin synthetase 1739175 cls-2 3242732 cls-2 Staphylococcus epidermidis RP62A cardiolipin synthetase YP_189260.1 1737709 D 176279 CDS YP_189261.1 57867620 3242733 1739357..1740010 1 NC_002976.3 identified by match to protein family HMM PF01966; HD domain-containing protein 1740010 3242733 SERP1696 Staphylococcus epidermidis RP62A HD domain-containing protein YP_189261.1 1739357 D 176279 CDS YP_189262.1 57867621 3242734 complement(1740116..1740988) 1 NC_002976.3 identified by match to protein family HMM PF02096; hypothetical protein 1740988 3242734 SERP1697 Staphylococcus epidermidis RP62A hypothetical protein YP_189262.1 1740116 R 176279 CDS YP_189263.1 57867630 3242743 complement(1741077..1741718) 1 NC_002976.3 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1741718 thiE 3242743 thiE Staphylococcus epidermidis RP62A thiamine-phosphate pyrophosphorylase YP_189263.1 1741077 R 176279 CDS YP_189264.1 57867631 3242744 complement(1741721..1742509) 1 NC_002976.3 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 1742509 thiM 3242744 thiM Staphylococcus epidermidis RP62A hydroxyethylthiazole kinase YP_189264.1 1741721 R 176279 CDS YP_189265.1 57867632 3242122 complement(1742502..1743323) 1 NC_002976.3 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1743323 thiD-2 3242122 thiD-2 Staphylococcus epidermidis RP62A phosphomethylpyrimidine kinase YP_189265.1 1742502 R 176279 CDS YP_189266.1 57867633 3242123 complement(1743316..1744005) 1 NC_002976.3 identified by match to protein family HMM PF03070; TenA family transcription regulator 1744005 3242123 SERP1701 Staphylococcus epidermidis RP62A TenA family transcription regulator YP_189266.1 1743316 R 176279 CDS YP_189267.1 57867634 3242124 complement(1744290..1744949) 1 NC_002976.3 identified by similarity to GP:2735513; sceD protein 1744949 sceD 3242124 sceD Staphylococcus epidermidis RP62A sceD protein YP_189267.1 1744290 R 176279 CDS YP_189268.1 57867635 3242125 complement(1745337..1745732) 1 NC_002976.3 identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein family 1745732 3242125 SERP1703 Staphylococcus epidermidis RP62A single-stranded DNA-binding protein family YP_189268.1 1745337 R 176279 CDS YP_189269.1 57867636 3242126 1745923..1746363 1 NC_002976.3 identified by similarity to OMNI:SA2090; hypothetical protein 1746363 ywpF 3242126 ywpF Staphylococcus epidermidis RP62A hypothetical protein YP_189269.1 1745923 D 176279 CDS YP_189270.1 57867637 3242127 complement(1746681..1747118) 1 NC_002976.3 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1747118 fabZ 3242127 fabZ Staphylococcus epidermidis RP62A (3R)-hydroxymyristoyl-ACP dehydratase YP_189270.1 1746681 R 176279 CDS YP_189271.1 57867646 3242136 complement(1747152..1748417) 1 NC_002976.3 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1748417 murAA 3242136 murAA Staphylococcus epidermidis RP62A UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_189271.1 1747152 R 176279 CDS YP_189272.1 57867647 3242137 complement(1748527..1748760) 1 NC_002976.3 hypothetical protein 1748760 3242137 SERP1707 Staphylococcus epidermidis RP62A hypothetical protein YP_189272.1 1748527 R 176279 CDS YP_189273.1 57867648 3242138 complement(1748909..1749313) 1 NC_002976.3 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 1749313 atpC 3242138 atpC Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit epsilon YP_189273.1 1748909 R 176279 CDS YP_189274.1 57867649 3242139 complement(1749333..1750745) 1 NC_002976.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 1750745 atpD 3242139 atpD Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit beta YP_189274.1 1749333 R 176279 CDS YP_189275.1 57867650 3242140 complement(1750767..1751633) 1 NC_002976.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 1751633 atpG 3242140 atpG Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit gamma YP_189275.1 1750767 R 176279 CDS YP_189276.1 57867651 3242141 complement(1751718..1753229) 1 NC_002976.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 1753229 atpA 3242141 atpA Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit alpha YP_189276.1 1751718 R 176279 CDS YP_189277.1 57867652 3242142 complement(1753252..1753791) 1 NC_002976.3 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 1753791 atpH 3242142 atpH Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit delta YP_189277.1 1753252 R 176279 CDS YP_189278.1 57867660 3242150 complement(1753791..1754306) 1 NC_002976.3 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B 1754306 atpF 3242150 atpF Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit B YP_189278.1 1753791 R 176279 CDS YP_189279.1 57867661 3242151 complement(1754404..1754616) 1 NC_002976.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 1754616 atpE 3242151 atpE Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit C YP_189279.1 1754404 R 176279 CDS YP_189280.1 57867662 3242152 complement(1754659..1755387) 1 NC_002976.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 1755387 atpB 3242152 atpB Staphylococcus epidermidis RP62A ATP synthase F0F1 subunit A YP_189280.1 1754659 R 176279 CDS YP_189281.1 57867663 3242154 complement(1755916..1757061) 1 NC_002976.3 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 1757061 3242154 SERP1717 Staphylococcus epidermidis RP62A UDP-N-acetylglucosamine 2-epimerase YP_189281.1 1755916 R 176279 CDS YP_189282.1 57867664 3242155 complement(1757086..1757715) 1 NC_002976.3 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1757715 upp 3242155 upp Staphylococcus epidermidis RP62A uracil phosphoribosyltransferase YP_189282.1 1757086 R 176279 CDS YP_189283.1 57867665 3242156 complement(1757744..1758982) 1 NC_002976.3 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1758982 glyA 3242156 glyA Staphylococcus epidermidis RP62A serine hydroxymethyltransferase YP_189283.1 1757744 R 176279 CDS YP_189284.1 57867674 3242165 complement(1759007..1759531) 1 NC_002976.3 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein 1759531 3242165 SERP1720 Staphylococcus epidermidis RP62A hypothetical protein YP_189284.1 1759007 R 176279 CDS YP_189285.1 57867675 3242166 complement(1759641..1760060) 1 NC_002976.3 identified by similarity to EGAD:30369; match to protein family HMM PF01451; phosphotyrosine protein phosphatase 1760060 3242166 SERP1721 Staphylococcus epidermidis RP62A phosphotyrosine protein phosphatase YP_189285.1 1759641 R 176279 CDS YP_189286.1 57867582 3242695 complement(1760057..1761100) 1 NC_002976.3 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1761100 3242695 SERP1722 Staphylococcus epidermidis RP62A Sua5/YciO/YrdC/YwlC family protein YP_189286.1 1760057 R 176279 CDS YP_189287.1 57867583 3242696 complement(1761076..1761228) 1 NC_002976.3 hypothetical protein 1761228 3242696 SERP1723 Staphylococcus epidermidis RP62A hypothetical protein YP_189287.1 1761076 R 176279 CDS YP_189288.1 57867592 3242705 complement(1761263..1762099) 1 NC_002976.3 identified by match to protein family HMM TIGR00536; HemK family modification methylase 1762099 3242705 SERP1724 Staphylococcus epidermidis RP62A HemK family modification methylase YP_189288.1 1761263 R 176279 CDS YP_189289.1 57867593 3242706 complement(1762086..1763162) 1 NC_002976.3 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1763162 prfA 3242706 prfA Staphylococcus epidermidis RP62A peptide chain release factor 1 YP_189289.1 1762086 R 176279 CDS YP_189290.1 57867594 3242707 complement(1763162..1763761) 1 NC_002976.3 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1763761 tdk 3242707 tdk Staphylococcus epidermidis RP62A thymidine kinase YP_189290.1 1763162 R 176279 CDS YP_189291.1 57867595 3242708 complement(1764048..1764305) 1 NC_002976.3 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1764305 rpmE2 3242708 rpmE2 Staphylococcus epidermidis RP62A 50S ribosomal protein L31 YP_189291.1 1764048 R 176279 CDS YP_189292.1 57867596 3242709 complement(1764422..1765738) 1 NC_002976.3 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1765738 rho 3242709 rho Staphylococcus epidermidis RP62A transcription termination factor Rho YP_189292.1 1764422 R 176279 CDS YP_189293.1 57867597 3242710 complement(1766042..1767469) 1 NC_002976.3 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 1767469 3242710 SERP1729 Staphylococcus epidermidis RP62A aldehyde dehydrogenase YP_189293.1 1766042 R 176279 CDS YP_189294.1 57867598 3242711 complement(1767779..1768792) 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 1768792 3242711 SERP1730 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_189294.1 1767779 R 176279 CDS YP_189295.1 57867607 3242720 complement(1769457..1770716) 1 NC_002976.3 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1770716 murAB 3242720 murAB Staphylococcus epidermidis RP62A UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_189295.1 1769457 R 176279 CDS YP_189296.1 57867608 3242721 complement(1771077..1771937) 1 NC_002976.3 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase 1771937 fbaA 3242721 fbaA Staphylococcus epidermidis RP62A fructose-bisphosphate aldolase YP_189296.1 1771077 R 176279 CDS YP_189297.1 57867609 3242722 1772157..1772678 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2005; hypothetical protein 1772678 3242722 SERP1733 Staphylococcus epidermidis RP62A hypothetical protein YP_189297.1 1772157 D 176279 CDS YP_189298.1 57867610 3242723 complement(1772905..1774512) 1 NC_002976.3 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1774512 pyrG 3242723 pyrG Staphylococcus epidermidis RP62A CTP synthetase YP_189298.1 1772905 R 176279 CDS YP_189299.1 57867611 3242724 complement(1774849..1775385) 1 NC_002976.3 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 1775385 rpoE 3242724 rpoE Staphylococcus epidermidis RP62A DNA-directed RNA polymerase subunit delta YP_189299.1 1774849 R 176279 CDS YP_189300.1 57867612 3242725 complement(1775496..1776356) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1776356 3242725 SERP1736 Staphylococcus epidermidis RP62A acetyltransferase YP_189300.1 1775496 R 176279 CDS YP_189301.1 57867613 3242726 1776659..1777456 1 NC_002976.3 catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 1777456 3242726 SERP1737 Staphylococcus epidermidis RP62A pantothenate kinase YP_189301.1 1776659 D 176279 CDS YP_189302.1 57867622 3242735 complement(1777677..1778342) 1 NC_002976.3 identified by similarity to OMNI:SA2123; hypothetical protein 1778342 3242735 SERP1738 Staphylococcus epidermidis RP62A hypothetical protein YP_189302.1 1777677 R 176279 CDS YP_189303.1 57867623 3242736 complement(1778516..1779706) 1 NC_002976.3 identified by similarity to OMNI:SA2124; hypothetical protein 1779706 3242736 SERP1739 Staphylococcus epidermidis RP62A hypothetical protein YP_189303.1 1778516 R 176279 CDS YP_189304.1 57867624 3242737 complement(1779706..1780890) 1 NC_002976.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 1780890 3242737 SERP1740 Staphylococcus epidermidis RP62A amidohydrolase YP_189304.1 1779706 R 176279 CDS YP_189305.1 57867625 3242738 1781118..1781588 1 NC_002976.3 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1781588 luxS 3242738 luxS Staphylococcus epidermidis RP62A S-ribosylhomocysteinase YP_189305.1 1781118 D 176279 CDS YP_189306.1 57867626 3242739 complement(1781739..1782089) 1 NC_002976.3 identified by similarity to GP:14247908; hypothetical protein 1782089 3242739 SERP1742 Staphylococcus epidermidis RP62A hypothetical protein YP_189306.1 1781739 R 176279 CDS YP_189307.1 57867627 3242740 complement(1782086..1783276) 1 NC_002976.3 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1783276 deoB 3242740 deoB Staphylococcus epidermidis RP62A phosphopentomutase YP_189307.1 1782086 R 176279 CDS YP_189308.1 57867628 3242741 complement(1783289..1784590) 1 NC_002976.3 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 1784590 pdp 3242741 pdp Staphylococcus epidermidis RP62A pyrimidine-nucleoside phosphorylase YP_189308.1 1783289 R 176279 CDS YP_189309.1 57867629 3242742 complement(1784623..1785285) 1 NC_002976.3 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1785285 deoC 3242742 deoC Staphylococcus epidermidis RP62A deoxyribose-phosphate aldolase YP_189309.1 1784623 R 176279 CDS YP_189310.1 57867638 3242128 complement(1785278..1785397) 1 NC_002976.3 hypothetical protein 1785397 3242128 SERP1746 Staphylococcus epidermidis RP62A hypothetical protein YP_189310.1 1785278 R 176279 CDS YP_189311.1 57867639 3242129 1785492..1786202 1 NC_002976.3 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1786202 deoD 3242129 deoD Staphylococcus epidermidis RP62A purine nucleoside phosphorylase YP_189311.1 1785492 D 176279 CDS YP_189312.1 57867640 3242130 complement(1786326..1786772) 1 NC_002976.3 identified by match to protein family HMM PF00210; match to protein family HMM PF02047; Dps family protein 1786772 3242130 SERP1748 Staphylococcus epidermidis RP62A Dps family protein YP_189312.1 1786326 R 176279 CDS YP_189313.1 57867641 3242131 complement(1786960..1787370) 1 NC_002976.3 identified by similarity to OMNI:SA2132; hypothetical protein 1787370 3242131 SERP1749 Staphylococcus epidermidis RP62A hypothetical protein YP_189313.1 1786960 R 176279 CDS YP_189314.1 57867642 3242132 complement(1787551..1788927) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2020; hypothetical protein 1788927 3242132 SERP1750 Staphylococcus epidermidis RP62A hypothetical protein YP_189314.1 1787551 R 176279 CDS YP_189315.1 57867643 3242133 complement(1789160..1789387) 1 NC_002976.3 identified by similarity to OMNI:SA2134; hypothetical protein 1789387 3242133 SERP1751 Staphylococcus epidermidis RP62A hypothetical protein YP_189315.1 1789160 R 176279 CDS YP_189316.1 57867644 3242134 complement(1789442..1790380) 1 NC_002976.3 identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1790380 manA-1 3242134 manA-1 Staphylococcus epidermidis RP62A mannose-6-phosphate isomerase YP_189316.1 1789442 R 176279 CDS YP_189317.1 57867645 3242135 complement(1790675..1790824) 1 NC_002976.3 hypothetical protein 1790824 3242135 SERP1753 Staphylococcus epidermidis RP62A hypothetical protein YP_189317.1 1790675 R 176279 CDS YP_189318.1 57867653 3242143 complement(1791022..1791678) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2023; hypothetical protein 1791678 3242143 SERP1754 Staphylococcus epidermidis RP62A hypothetical protein YP_189318.1 1791022 R 176279 CDS YP_189319.1 57867654 3242144 1791823..1792164 1 NC_002976.3 identified by similarity to OMNI:SA2137; match to protein family HMM PF01022; CzrA family transcriptional regulator 1792164 czrA 3242144 czrA Staphylococcus epidermidis RP62A CzrA family transcriptional regulator YP_189319.1 1791823 D 176279 CDS YP_189320.1 57867655 3242145 1792151..1793104 1 NC_002976.3 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1793104 3242145 SERP1756 Staphylococcus epidermidis RP62A cation efflux family protein YP_189320.1 1792151 D 176279 CDS YP_189321.1 57867656 3242146 complement(1793365..1794096) 1 NC_002976.3 identified by similarity to EGAD:165239; match to protein family HMM PF00149; hypothetical protein 1794096 3242146 SERP1757 Staphylococcus epidermidis RP62A hypothetical protein YP_189321.1 1793365 R 176279 CDS YP_189322.1 57867657 3242147 1794229..1795380 1 NC_002976.3 lytic regulatory protein 1795380 3242147 SERP1758 Staphylococcus epidermidis RP62A lytic regulatory protein YP_189322.1 1794229 D 176279 CDS YP_189323.1 57867658 3242148 complement(1795685..1796554) 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD-superfamily cof-like hydrolase 1796554 3242148 SERP1759 Staphylococcus epidermidis RP62A HAD-superfamily cof-like hydrolase YP_189323.1 1795685 R 176279 CDS YP_189324.1 57867659 3242149 complement(1797037..1798842) 1 NC_002976.3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1798842 glmS 3242149 glmS Staphylococcus epidermidis RP62A glucosamine--fructose-6-phosphate aminotransferase YP_189324.1 1797037 R 176279 CDS YP_189325.1 57867666 3242157 complement(1798883..1799038) 1 NC_002976.3 hypothetical protein 1799038 3242157 SERP1761 Staphylococcus epidermidis RP62A hypothetical protein YP_189325.1 1798883 R 176279 CDS YP_189326.1 57867667 3242158 complement(1799474..1800829) 1 NC_002976.3 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1800829 glmM 3242158 glmM Staphylococcus epidermidis RP62A phosphoglucosamine mutase YP_189326.1 1799474 R 176279 CDS YP_189327.1 57867668 3242159 complement(1800854..1801789) 1 NC_002976.3 hypothetical protein 1801789 3242159 SERP1763 Staphylococcus epidermidis RP62A hypothetical protein YP_189327.1 1800854 R 176279 CDS YP_189328.1 57867669 3242160 complement(1801790..1802599) 1 NC_002976.3 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1802599 3242160 SERP1764 Staphylococcus epidermidis RP62A hypothetical protein YP_189328.1 1801790 R 176279 CDS YP_189329.1 57867670 3242161 complement(1808640..1809707) 1 NC_002976.3 ATP-binding Mrp/Nbp35 family protein 1809707 3242161 SERP1765 Staphylococcus epidermidis RP62A ATP-binding Mrp/Nbp35 family protein YP_189329.1 1808640 R 176279 CDS YP_189330.1 57867671 3242162 complement(1809858..1811297) 1 NC_002976.3 identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1811297 3242162 SERP1766 Staphylococcus epidermidis RP62A EmrB/QacA family drug resistance transporter YP_189330.1 1809858 R 176279 CDS YP_189331.1 57867672 3242163 complement(1811567..1812037) 1 NC_002976.3 identified by similarity to OMNI:SA2158; hypothetical protein 1812037 3242163 SERP1767 Staphylococcus epidermidis RP62A hypothetical protein YP_189331.1 1811567 R 176279 CDS YP_189332.1 57867673 3242164 complement(1812225..1813562) 1 NC_002976.3 drug transporter 1813562 3242164 SERP1768 Staphylococcus epidermidis RP62A drug transporter YP_189332.1 1812225 R 176279 CDS YP_189333.1 57867682 3242173 complement(1813801..1814484) 1 NC_002976.3 identified by similarity to EGAD:38000; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1814484 3242173 SERP1769 Staphylococcus epidermidis RP62A hemolysin III YP_189333.1 1813801 R 176279 CDS YP_189334.1 57867683 3241227 complement(1814503..1815690) 1 NC_002976.3 identified by match to protein family HMM PF01704; UTP-glucose-1-phosphate uridylyltransferase 1815690 3241227 SERP1770 Staphylococcus epidermidis RP62A UTP-glucose-1-phosphate uridylyltransferase YP_189334.1 1814503 R 176279 CDS YP_189335.1 57867684 3241228 complement(1815745..1816254) 1 NC_002976.3 identified by match to protein family HMM PF04307; hypothetical protein 1816254 3241228 SERP1771 Staphylococcus epidermidis RP62A hypothetical protein YP_189335.1 1815745 R 176279 CDS YP_189336.1 57867685 3241229 1816431..1816691 1 NC_002976.3 identified by similarity to GP:14247946; hypothetical protein 1816691 3241229 SERP1772 Staphylococcus epidermidis RP62A hypothetical protein YP_189336.1 1816431 D 176279 CDS YP_189337.1 57867686 3241230 1816844..1817158 1 NC_002976.3 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1817158 3241230 SERP1773 Staphylococcus epidermidis RP62A heme-degrading monooxygenase IsdG YP_189337.1 1816844 D 176279 CDS YP_189338.1 57867687 3241231 complement(1817337..1818710) 1 NC_002976.3 hypothetical protein 1818710 3241231 SERP1774 Staphylococcus epidermidis RP62A hypothetical protein YP_189338.1 1817337 R 176279 CDS YP_189339.1 57867688 3241232 complement(1819007..1819972) 1 NC_002976.3 identified by match to protein family HMM PF01032; iron ABC transporter permease 1819972 3241232 SERP1775 Staphylococcus epidermidis RP62A iron ABC transporter permease YP_189339.1 1819007 R 176279 CDS YP_189340.1 57867689 3241233 complement(1819969..1821000) 1 NC_002976.3 identified by similarity to GP:9743645; match to protein family HMM PF01032; iron ABC transporter permease 1821000 3241233 SERP1776 Staphylococcus epidermidis RP62A iron ABC transporter permease YP_189340.1 1819969 R 176279 CDS YP_189341.1 57867699 3241243 complement(1821012..1822007) 1 NC_002976.3 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1822007 3241243 SERP1777 Staphylococcus epidermidis RP62A iron ABC transporter substrate-binding protein YP_189341.1 1821012 R 176279 CDS YP_189342.1 57867700 3241244 complement(1822209..1823270) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2063; match to protein family HMM PF01168; hypothetical protein 1823270 3241244 SERP1778 Staphylococcus epidermidis RP62A hypothetical protein YP_189342.1 1822209 R 176279 CDS YP_189343.1 57867701 3241245 complement(1823274..1825031) 1 NC_002976.3 identified by similarity to OMNI:SA2169; match to protein family HMM PF04183; hypothetical protein 1825031 3241245 SERP1779 Staphylococcus epidermidis RP62A hypothetical protein YP_189343.1 1823274 R 176279 CDS YP_189344.1 57867702 3241246 complement(1825021..1826202) 1 NC_002976.3 transporter 1826202 3241246 SERP1780 Staphylococcus epidermidis RP62A transporter YP_189344.1 1825021 R 176279 CDS YP_189345.1 57867703 3241247 1826305..1828266 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2066; match to protein family HMM PF04183; hypothetical protein 1828266 3241247 SERP1781 Staphylococcus epidermidis RP62A hypothetical protein YP_189345.1 1826305 D 176279 CDS YP_189346.1 57867704 3241248 complement(1828323..1828823) 1 NC_002976.3 identified by similarity to EGAD:40949; match to protein family HMM PF03780; alkaline shock protein 23 1828823 3241248 SERP1782 Staphylococcus epidermidis RP62A alkaline shock protein 23 YP_189346.1 1828323 R 176279 CDS YP_189347.1 57867705 3241249 complement(1828897..1829136) 1 NC_002976.3 identified by similarity to OMNI:SA2174; hypothetical protein 1829136 3241249 SERP1783 Staphylococcus epidermidis RP62A hypothetical protein YP_189347.1 1828897 R 176279 CDS YP_189348.1 57867706 3241250 complement(1829149..1829685) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2069; hypothetical protein 1829685 3241250 SERP1784 Staphylococcus epidermidis RP62A hypothetical protein YP_189348.1 1829149 R 176279 CDS YP_189349.1 57867716 3241260 complement(1830481..1831491) 1 NC_002976.3 identified by match to protein family HMM PF00107; alcohol dehydrogenase 1831491 3241260 SERP1785 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_189349.1 1830481 R 176279 CDS YP_189350.1 57867717 3241261 complement(1831590..1832594) 1 NC_002976.3 identified by match to protein family HMM PF00107; alcohol dehydrogenase 1832594 3241261 SERP1786 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_189350.1 1831590 R 176279 CDS YP_189351.1 57867718 3241263 complement(1833830..1834696) 1 NC_002976.3 hypothetical protein 1834696 3241263 SERP1788 Staphylococcus epidermidis RP62A hypothetical protein YP_189351.1 1833830 R 176279 CDS YP_189352.1 57867719 3241264 complement(1834967..1836379) 1 NC_002976.3 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase 1836379 lacG 3241264 lacG Staphylococcus epidermidis RP62A 6-phospho-beta-galactosidase YP_189352.1 1834967 R 176279 CDS YP_189353.1 57867720 3241265 complement(1836395..1838143) 1 NC_002976.3 identified by similarity to EGAD:15299; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00850; match to protein family HMM TIGR00853; PTS system, lactose-specific IIBC components 1838143 lacE 3241265 lacE Staphylococcus epidermidis RP62A PTS system, lactose-specific IIBC components YP_189353.1 1836395 R 176279 CDS YP_189354.1 57867721 3241266 complement(1838149..1838463) 1 NC_002976.3 identified by similarity to SP:P23532; match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system, lactose-specific IIA component 1838463 lacF 3241266 lacF Staphylococcus epidermidis RP62A PTS system, lactose-specific IIA component YP_189354.1 1838149 R 176279 CDS YP_189355.1 57867731 3241276 complement(1838483..1839460) 1 NC_002976.3 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 1839460 lacD 3241276 lacD Staphylococcus epidermidis RP62A tagatose 1,6-diphosphate aldolase YP_189355.1 1838483 R 176279 CDS YP_189356.1 57867732 3241277 complement(1839464..1840396) 1 NC_002976.3 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase 1840396 lacC 3241277 lacC Staphylococcus epidermidis RP62A tagatose-6-phosphate kinase YP_189356.1 1839464 R 176279 CDS YP_189357.1 57867733 3241278 complement(1840409..1840924) 1 NC_002976.3 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 1840924 lacB 3241278 lacB Staphylococcus epidermidis RP62A galactose-6-phosphate isomerase subunit LacB YP_189357.1 1840409 R 176279 CDS YP_189358.1 57867734 3241956 complement(1840939..1841367) 1 NC_002976.3 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 1841367 lacA 3241956 lacA Staphylococcus epidermidis RP62A galactose-6-phosphate isomerase subunit LacA YP_189358.1 1840939 R 176279 CDS YP_189359.1 57867735 3241957 complement(1841734..1842489) 1 NC_002976.3 identified by similarity to SP:P16644; match to protein family HMM PF00455; lactose phosphotransferase system repressor 1842489 lacR 3241957 lacR Staphylococcus epidermidis RP62A lactose phosphotransferase system repressor YP_189359.1 1841734 R 176279 CDS YP_189360.1 57867736 3241958 1842789..1843529 1 NC_002976.3 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1843529 3241958 SERP1797 Staphylococcus epidermidis RP62A NAD-dependent deacetylase YP_189360.1 1842789 D 176279 CDS YP_189361.1 57867737 3241959 complement(1843791..1844183) 1 NC_002976.3 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1844183 rpsI 3241959 rpsI Staphylococcus epidermidis RP62A 30S ribosomal protein S9 YP_189361.1 1843791 R 176279 CDS YP_189362.1 57867746 3241968 complement(1844203..1844640) 1 NC_002976.3 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1844640 rplM 3241968 rplM Staphylococcus epidermidis RP62A 50S ribosomal protein L13 YP_189362.1 1844203 R 176279 CDS YP_189363.1 57867747 3241969 complement(1844901..1845704) 1 NC_002976.3 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1845704 truA 3241969 truA Staphylococcus epidermidis RP62A tRNA pseudouridine synthase A YP_189363.1 1844901 R 176279 CDS YP_189364.1 57867748 3241970 complement(1845708..1846514) 1 NC_002976.3 identified by match to protein family HMM PF02361; cobalt transport family protein 1846514 3241970 SERP1801 Staphylococcus epidermidis RP62A cobalt transport family protein YP_189364.1 1845708 R 176279 CDS YP_189365.1 57867749 3241971 complement(1846504..1847364) 1 NC_002976.3 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 1847364 cbiO 3241971 cbiO Staphylococcus epidermidis RP62A cobalt transporter ATP-binding subunit YP_189365.1 1846504 R 176279 CDS YP_189366.1 57867750 3241972 complement(1847361..1848170) 1 NC_002976.3 with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 1848170 cbiO 3241972 cbiO Staphylococcus epidermidis RP62A cobalt transporter ATP-binding subunit YP_189366.1 1847361 R 176279 CDS YP_189367.1 57867751 3241973 complement(1848501..1848869) 1 NC_002976.3 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1848869 rplQ 3241973 rplQ Staphylococcus epidermidis RP62A 50S ribosomal protein L17 YP_189367.1 1848501 R 176279 CDS YP_189368.1 57867752 3241974 complement(1848886..1849830) 1 NC_002976.3 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1849830 rpoA 3241974 rpoA Staphylococcus epidermidis RP62A DNA-directed RNA polymerase subunit alpha YP_189368.1 1848886 R 176279 CDS YP_189369.1 57867676 3242167 complement(1849907..1850296) 1 NC_002976.3 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1850296 rpsK 3242167 rpsK Staphylococcus epidermidis RP62A 30S ribosomal protein S11 YP_189369.1 1849907 R 176279 CDS YP_189370.1 57867677 3242168 complement(1850319..1850684) 1 NC_002976.3 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1850684 rpsM 3242168 rpsM Staphylococcus epidermidis RP62A 30S ribosomal protein S13 YP_189370.1 1850319 R 176279 CDS YP_189371.1 57867678 3242169 complement(1850707..1850820) 1 NC_002976.3 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1850820 rpmJ 3242169 rpmJ Staphylococcus epidermidis RP62A 50S ribosomal protein L36 YP_189371.1 1850707 R 176279 CDS YP_189372.1 57867679 3242170 complement(1850852..1851070) 1 NC_002976.3 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1851070 infA 3242170 infA Staphylococcus epidermidis RP62A translation initiation factor IF-1 YP_189372.1 1850852 R 176279 CDS YP_189373.1 57867680 3242171 complement(1851258..1851905) 1 NC_002976.3 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1851905 adk 3242171 adk Staphylococcus epidermidis RP62A adenylate kinase YP_189373.1 1851258 R 176279 CDS YP_189374.1 57867681 3242172 complement(1851923..1853215) 1 NC_002976.3 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1853215 secY 3242172 secY Staphylococcus epidermidis RP62A preprotein translocase subunit SecY YP_189374.1 1851923 R 176279 CDS YP_189375.1 57867690 3241234 complement(1853215..1853655) 1 NC_002976.3 late assembly protein; 50S ribosomal protein L15 1853655 rplO 3241234 rplO Staphylococcus epidermidis RP62A 50S ribosomal protein L15 YP_189375.1 1853215 R 176279 CDS YP_189376.1 57867691 3241235 complement(1853672..1853854) 1 NC_002976.3 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1853854 rpmD 3241235 rpmD Staphylococcus epidermidis RP62A 50S ribosomal protein L30 YP_189376.1 1853672 R 176279 CDS YP_189377.1 57867692 3241236 complement(1853871..1854371) 1 NC_002976.3 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1854371 rpsE 3241236 rpsE Staphylococcus epidermidis RP62A 30S ribosomal protein S5 YP_189377.1 1853871 R 176279 CDS YP_189378.1 57867693 3241237 complement(1854391..1854753) 1 NC_002976.3 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1854753 rplR 3241237 rplR Staphylococcus epidermidis RP62A 50S ribosomal protein L18 YP_189378.1 1854391 R 176279 CDS YP_189379.1 57867694 3241238 complement(1854785..1855321) 1 NC_002976.3 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1855321 rplF 3241238 rplF Staphylococcus epidermidis RP62A 50S ribosomal protein L6 YP_189379.1 1854785 R 176279 CDS YP_189380.1 57867695 3241239 complement(1855346..1855744) 1 NC_002976.3 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1855744 rpsH 3241239 rpsH Staphylococcus epidermidis RP62A 30S ribosomal protein S8 YP_189380.1 1855346 R 176279 CDS YP_189381.1 57867696 3241240 complement(1855775..1855960) 1 NC_002976.3 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1855960 rpsN 3241240 rpsN Staphylococcus epidermidis RP62A 30S ribosomal protein S14 YP_189381.1 1855775 R 176279 CDS YP_189382.1 57867697 3241241 complement(1855983..1856522) 1 NC_002976.3 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1856522 rplE 3241241 rplE Staphylococcus epidermidis RP62A 50S ribosomal protein L5 YP_189382.1 1855983 R 176279 CDS YP_189383.1 57867698 3241242 complement(1856548..1856865) 1 NC_002976.3 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1856865 rplX 3241242 rplX Staphylococcus epidermidis RP62A 50S ribosomal protein L24 YP_189383.1 1856548 R 176279 CDS YP_189384.1 57867707 3241251 complement(1856907..1857275) 1 NC_002976.3 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1857275 rplN 3241251 rplN Staphylococcus epidermidis RP62A 50S ribosomal protein L14 YP_189384.1 1856907 R 176279 CDS YP_189385.1 57867708 3241252 complement(1857306..1857569) 1 NC_002976.3 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1857569 rpsQ 3241252 rpsQ Staphylococcus epidermidis RP62A 30S ribosomal protein S17 YP_189385.1 1857306 R 176279 CDS YP_189386.1 57867709 3241253 complement(1857594..1857803) 1 NC_002976.3 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1857803 rpmC 3241253 rpmC Staphylococcus epidermidis RP62A 50S ribosomal protein L29 YP_189386.1 1857594 R 176279 CDS YP_189387.1 57867710 3241254 complement(1857793..1858227) 1 NC_002976.3 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1858227 rplP 3241254 rplP Staphylococcus epidermidis RP62A 50S ribosomal protein L16 YP_189387.1 1857793 R 176279 CDS YP_189388.1 57867711 3241255 complement(1858230..1858883) 1 NC_002976.3 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1858883 rpsC 3241255 rpsC Staphylococcus epidermidis RP62A 30S ribosomal protein S3 YP_189388.1 1858230 R 176279 CDS YP_189389.1 57867712 3241256 complement(1858907..1859260) 1 NC_002976.3 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1859260 rplV 3241256 rplV Staphylococcus epidermidis RP62A 50S ribosomal protein L22 YP_189389.1 1858907 R 176279 CDS YP_189390.1 57867713 3241257 complement(1859288..1859566) 1 NC_002976.3 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1859566 rpsS 3241257 rpsS Staphylococcus epidermidis RP62A 30S ribosomal protein S19 YP_189390.1 1859288 R 176279 CDS YP_189391.1 57867714 3241258 complement(1859633..1860466) 1 NC_002976.3 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1860466 rplB 3241258 rplB Staphylococcus epidermidis RP62A 50S ribosomal protein L2 YP_189391.1 1859633 R 176279 CDS YP_189392.1 57867715 3241259 complement(1860495..1860770) 1 NC_002976.3 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1860770 rplW 3241259 rplW Staphylococcus epidermidis RP62A 50S ribosomal protein L23 YP_189392.1 1860495 R 176279 CDS YP_189393.1 57867722 3241267 complement(1860770..1861393) 1 NC_002976.3 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1861393 rplD 3241267 rplD Staphylococcus epidermidis RP62A 50S ribosomal protein L4 YP_189393.1 1860770 R 176279 CDS YP_189394.1 57867723 3241268 complement(1861422..1862084) 1 NC_002976.3 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1862084 rplC 3241268 rplC Staphylococcus epidermidis RP62A 50S ribosomal protein L3 YP_189394.1 1861422 R 176279 CDS YP_189395.1 57867724 3241269 complement(1862112..1862420) 1 NC_002976.3 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1862420 rpsJ 3241269 rpsJ Staphylococcus epidermidis RP62A 30S ribosomal protein S10 YP_189395.1 1862112 R 176279 CDS YP_189396.1 57867725 3241270 complement(1862552..1862665) 1 NC_002976.3 hypothetical protein 1862665 3241270 SERP1833 Staphylococcus epidermidis RP62A hypothetical protein YP_189396.1 1862552 R 176279 CDS YP_189397.1 57867726 3241271 1862776..1863174 1 NC_002976.3 identified by similarity to OMNI:SA2241; hypothetical protein 1863174 3241271 SERP1834 Staphylococcus epidermidis RP62A hypothetical protein YP_189397.1 1862776 D 176279 CDS YP_189398.1 57867727 3241272 complement(1863231..1864565) 1 NC_002976.3 identified by match to protein family HMM PF00860; xanthine/uracil permease 1864565 3241272 SERP1835 Staphylococcus epidermidis RP62A xanthine/uracil permease YP_189398.1 1863231 R 176279 CDS YP_189399.1 57867728 3241273 complement(1864678..1866813) 1 NC_002976.3 decatenates replicating daughter chromosomes; DNA topoisomerase III 1866813 topB 3241273 topB Staphylococcus epidermidis RP62A DNA topoisomerase III YP_189399.1 1864678 R 176279 CDS YP_189400.1 57867729 3241274 complement(1866982..1867131) 1 NC_002976.3 hypothetical protein 1867131 3241274 SERP1837 Staphylococcus epidermidis RP62A hypothetical protein YP_189400.1 1866982 R 176279 CDS YP_189401.1 57867730 3241275 1867104..1867967 1 NC_002976.3 sugar transporter 1867967 3241275 SERP1838 Staphylococcus epidermidis RP62A sugar transporter YP_189401.1 1867104 D 176279 CDS YP_189402.1 57867738 3241960 1867995..1868786 1 NC_002976.3 identified by similarity to EGAD:23230; match to protein family HMM PF00106; match to protein family HMM PF00678; glucose 1-dehydrogenase 1868786 gdh 3241960 gdh Staphylococcus epidermidis RP62A glucose 1-dehydrogenase YP_189402.1 1867995 D 176279 CDS YP_189403.1 57867739 3241961 complement(1868981..1869889) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2143; match to protein family HMM PF03547; hypothetical protein 1869889 3241961 SERP1840 Staphylococcus epidermidis RP62A hypothetical protein YP_189403.1 1868981 R 176279 CDS YP_189404.1 57867740 3241962 1870031..1870201 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2144; hypothetical protein 1870201 3241962 SERP1841 Staphylococcus epidermidis RP62A hypothetical protein YP_189404.1 1870031 D 176279 CDS YP_189405.1 57867741 3241963 1870493..1870810 1 NC_002976.3 identified by similarity to OMNI:SA2251; hypothetical protein 1870810 3241963 SERP1842 Staphylococcus epidermidis RP62A hypothetical protein YP_189405.1 1870493 D 176279 CDS YP_189406.1 57867742 3241964 complement(1870861..1874016) 1 NC_002976.3 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 1874016 3241964 SERP1843 Staphylococcus epidermidis RP62A AcrB/AcrD/AcrF family protein YP_189406.1 1870861 R 176279 CDS YP_189407.1 57867743 3241965 complement(1874093..1875343) 1 NC_002976.3 identified by similarity to GP:6492111; match to protein family HMM PF02388; femX protein 1875343 femX 3241965 femX Staphylococcus epidermidis RP62A femX protein YP_189407.1 1874093 R 176279 CDS YP_189408.1 57867744 3241966 complement(1875743..1876504) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2149; hypothetical protein 1876504 3241966 SERP1845 Staphylococcus epidermidis RP62A hypothetical protein YP_189408.1 1875743 R 176279 CDS YP_189409.1 57867745 3241967 1876667..1877107 1 NC_002976.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1877107 3241967 SERP1846 Staphylococcus epidermidis RP62A MarR family transcriptional regulator YP_189409.1 1876667 D 176279 CDS YP_189410.1 57867754 3241976 1877107..1878300 1 NC_002976.3 identified by match to protein family HMM PF00083; drug transporter 1878300 3241976 SERP1847 Staphylococcus epidermidis RP62A drug transporter YP_189410.1 1877107 D 176279 CDS YP_189411.1 57867755 3241978 complement(1879141..1879491) 1 NC_002976.3 identified by match to protein family HMM TIGR01889; accessory regulator V 1879491 sarV 3241978 sarV Staphylococcus epidermidis RP62A accessory regulator V YP_189411.1 1879141 R 176279 CDS YP_189412.1 57867756 3241979 complement(1879893..1880915) 1 NC_002976.3 identified by similarity to EGAD:15818; match to protein family HMM PF01444; match to protein family HMM PF04055; molybdenum cofactor biosynthesis protein A 1880915 moaA 3241979 moaA Staphylococcus epidermidis RP62A molybdenum cofactor biosynthesis protein A YP_189412.1 1879893 R 176279 CDS YP_189413.1 57867757 3241980 complement(1880928..1881542) 1 NC_002976.3 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1881542 mobA 3241980 mobA Staphylococcus epidermidis RP62A molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_189413.1 1880928 R 176279 CDS YP_189414.1 57867758 3241981 complement(1881539..1881772) 1 NC_002976.3 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor, subunit 1 1881772 moaD 3241981 moaD Staphylococcus epidermidis RP62A molybdopterin converting factor, subunit 1 YP_189414.1 1881539 R 176279 CDS YP_189415.1 57867759 3241982 complement(1881769..1882221) 1 NC_002976.3 identified by match to protein family HMM PF02391; molybdenum cofactor biosynthesis protein E 1882221 moaE 3241982 moaE Staphylococcus epidermidis RP62A molybdenum cofactor biosynthesis protein E YP_189415.1 1881769 R 176279 CDS YP_189416.1 57867768 3241991 complement(1882222..1882698) 1 NC_002976.3 identified by similarity to EGAD:107851; match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 1882698 mobB 3241991 mobB Staphylococcus epidermidis RP62A molybdopterin-guanine dinucleotide biosynthesis protein B YP_189416.1 1882222 R 176279 CDS YP_189417.1 57867769 3241992 complement(1882695..1883954) 1 NC_002976.3 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1883954 3241992 SERP1855 Staphylococcus epidermidis RP62A molybdopterin biosynthesis MoeA protein YP_189417.1 1882695 R 176279 CDS YP_189418.1 57867770 3241993 1884016..1884504 1 NC_002976.3 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1884504 moaC 3241993 moaC Staphylococcus epidermidis RP62A molybdenum cofactor biosynthesis protein MoaC YP_189418.1 1884016 D 176279 CDS YP_189419.1 57867771 3241994 complement(1884565..1885095) 1 NC_002976.3 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B 1885095 moaB 3241994 moaB Staphylococcus epidermidis RP62A molybdenum cofactor biosynthesis protein B YP_189419.1 1884565 R 176279 CDS YP_189420.1 57867772 3241995 complement(1885116..1886117) 1 NC_002976.3 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis MoeB protein 1886117 3241995 SERP1858 Staphylococcus epidermidis RP62A molybdopterin biosynthesis MoeB protein YP_189420.1 1885116 R 176279 CDS YP_189421.1 57867773 3241996 complement(1886193..1886813) 1 NC_002976.3 identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein ModC 1886813 modC 3241996 modC Staphylococcus epidermidis RP62A molybdenum ABC transporter ATP-binding protein ModC YP_189421.1 1886193 R 176279 CDS YP_189422.1 57867782 3242005 complement(1886814..1887485) 1 NC_002976.3 identified by similarity to SP:P09834; match to protein family HMM PF00528; molybdenum ABC transporter permease ModB 1887485 modB 3242005 modB Staphylococcus epidermidis RP62A molybdenum ABC transporter permease ModB YP_189422.1 1886814 R 176279 CDS YP_189423.1 57867783 3242006 complement(1887499..1888284) 1 NC_002976.3 identified by match to protein family HMM PF01547; match to protein family HMM PF03697; match to protein family HMM TIGR01256; molybdenum ABC transporter molybdenum-binding protein ModA 1888284 modA 3242006 modA Staphylococcus epidermidis RP62A molybdenum ABC transporter molybdenum-binding protein ModA YP_189423.1 1887499 R 176279 CDS YP_189424.1 57867784 3242008 complement(1889405..1890160) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1890160 3242008 SERP1863 Staphylococcus epidermidis RP62A acetyltransferase YP_189424.1 1889405 R 176279 CDS YP_189425.1 57867785 3241855 complement(1890197..1890745) 1 NC_002976.3 identified by match to protein family HMM PF02632; BioY family protein 1890745 3241855 SERP1864 Staphylococcus epidermidis RP62A BioY family protein YP_189425.1 1890197 R 176279 CDS YP_189426.1 57867786 3241856 complement(1890855..1891796) 1 NC_002976.3 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein 1891796 3241856 SERP1865 Staphylococcus epidermidis RP62A inosine-uridine preferring nucleoside hydrolase family protein YP_189426.1 1890855 R 176279 CDS YP_189427.1 57867787 3241857 complement(1892115..1893260) 1 NC_002976.3 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase 1893260 3241857 SERP1866 Staphylococcus epidermidis RP62A acyl-CoA dehydrogenase YP_189427.1 1892115 R 176279 CDS YP_189428.1 57867793 3241864 1893274..1893408 1 NC_002976.3 hypothetical protein 1893408 3241864 SERP1867 Staphylococcus epidermidis RP62A hypothetical protein YP_189428.1 1893274 D 176279 CDS YP_189429.1 57867794 3241865 complement(1893690..1894592) 1 NC_002976.3 identified by match to protein family HMM PF03253; transporter 1894592 3241865 SERP1868 Staphylococcus epidermidis RP62A transporter YP_189429.1 1893690 R 176279 CDS YP_189430.1 57867795 3241866 1894860..1895162 1 NC_002976.3 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 1895162 ureA 3241866 ureA Staphylococcus epidermidis RP62A urease subunit gamma YP_189430.1 1894860 D 176279 CDS YP_189431.1 57867796 3241867 1895176..1895577 1 NC_002976.3 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 1895577 ureB 3241867 ureB Staphylococcus epidermidis RP62A urease subunit beta YP_189431.1 1895176 D 176279 CDS YP_189432.1 57867797 3241868 1895580..1897295 1 NC_002976.3 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1897295 ureC 3241868 ureC Staphylococcus epidermidis RP62A urease subunit alpha YP_189432.1 1895580 D 176279 CDS YP_189433.1 57867798 3241869 1897309..1897761 1 NC_002976.3 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 1897761 ureE 3241869 ureE Staphylococcus epidermidis RP62A urease accessory protein UreE YP_189433.1 1897309 D 176279 CDS YP_189434.1 57867799 3241870 1897754..1898443 1 NC_002976.3 identified by similarity to EGAD:8726; match to protein family HMM PF01730; urease accessory protein UreF 1898443 ureF 3241870 ureF Staphylococcus epidermidis RP62A urease accessory protein UreF YP_189434.1 1897754 D 176279 CDS YP_189435.1 57867800 3241871 1898456..1899070 1 NC_002976.3 identified by similarity to EGAD:6421; match to protein family HMM PF01495; match to protein family HMM TIGR00101; urease accessory protein UreG 1899070 ureG 3241871 ureG Staphylococcus epidermidis RP62A urease accessory protein UreG YP_189435.1 1898456 D 176279 CDS YP_189436.1 57867809 3241880 1899070..1899906 1 NC_002976.3 identified by similarity to EGAD:7142; match to protein family HMM PF01774; urease accessory protein UreD 1899906 ureD 3241880 ureD Staphylococcus epidermidis RP62A urease accessory protein UreD YP_189436.1 1899070 D 176279 CDS YP_189437.1 57867810 3241881 complement(1900011..1900355) 1 NC_002976.3 identified by similarity to EGAD:42500; match to protein family HMM TIGR01889; accessory regulator R 1900355 sarR 3241881 sarR Staphylococcus epidermidis RP62A accessory regulator R YP_189437.1 1900011 R 176279 CDS YP_189438.1 57867811 3241882 complement(1900760..1901083) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2181; hypothetical protein 1901083 3241882 SERP1877 Staphylococcus epidermidis RP62A hypothetical protein YP_189438.1 1900760 R 176279 CDS YP_189439.1 57867812 3241883 complement(1901119..1901847) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2182; match to protein family HMM TIGR01889; accessory regulator Y 1901847 sarY 3241883 sarY Staphylococcus epidermidis RP62A accessory regulator Y YP_189439.1 1901119 R 176279 CDS YP_189440.1 57867813 3241884 complement(1901886..1903859) 1 NC_002976.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1903859 3241884 SERP1879 Staphylococcus epidermidis RP62A AraC family transcriptional regulator YP_189440.1 1901886 R 176279 CDS YP_189441.1 57867814 3241885 1904431..1905204 1 NC_002976.3 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 1905204 3241885 SERP1880 Staphylococcus epidermidis RP62A secretory antigen precursor SsaA YP_189441.1 1904431 D 176279 CDS YP_189442.1 57867815 3241886 complement(1905653..1907050) 1 NC_002976.3 identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1907050 nhaC 3241886 nhaC Staphylococcus epidermidis RP62A Na+/H+ antiporter NhaC YP_189442.1 1905653 R 176279 CDS YP_189443.1 57867816 3241887 complement(1907115..1908185) 1 NC_002976.3 identified by match to protein family HMM PF02317; NAD/NADP octopine/nopaline dehydrogenase family protein 1908185 3241887 SERP1882 Staphylococcus epidermidis RP62A NAD/NADP octopine/nopaline dehydrogenase family protein YP_189443.1 1907115 R 176279 CDS YP_189444.1 57867826 3241897 1908567..1909061 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2188; hypothetical protein 1909061 3241897 SERP1883 Staphylococcus epidermidis RP62A hypothetical protein YP_189444.1 1908567 D 176279 CDS YP_189445.1 57867827 3241898 1909383..1909856 1 NC_002976.3 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 1909856 3241898 SERP1884 Staphylococcus epidermidis RP62A secretory antigen precursor SsaA YP_189445.1 1909383 D 176279 CDS YP_189446.1 57867828 3241899 complement(1909922..1910014) 1 NC_002976.3 hypothetical protein 1910014 3241899 SERP1885 Staphylococcus epidermidis RP62A hypothetical protein YP_189446.1 1909922 R 176279 CDS YP_189447.1 57867829 3241900 1910009..1910335 1 NC_002976.3 identified by similarity to SP:P30743; match to protein family HMM PF00893; sugE protein 1910335 sugE-1 3241900 sugE-1 Staphylococcus epidermidis RP62A sugE protein YP_189447.1 1910009 D 176279 CDS YP_189448.1 57867830 3241901 1910341..1910658 1 NC_002976.3 identified by match to protein family HMM PF00893; sugE protein 1910658 sugE-2 3241901 sugE-2 Staphylococcus epidermidis RP62A sugE protein YP_189448.1 1910341 D 176279 CDS YP_189449.1 57867831 3241902 1910736..1911689 1 NC_002976.3 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1911689 3241902 SERP1888 Staphylococcus epidermidis RP62A glycerate dehydrogenase YP_189449.1 1910736 D 176279 CDS YP_189450.1 57867832 3241903 complement(1911830..1912954) 1 NC_002976.3 identified by match to protein family HMM PF01360; hypothetical protein 1912954 3241903 SERP1889 Staphylococcus epidermidis RP62A hypothetical protein YP_189450.1 1911830 R 176279 CDS YP_189451.1 57867753 3241975 1913066..1913233 1 NC_002976.3 hypothetical protein 1913233 3241975 SERP1890 Staphylococcus epidermidis RP62A hypothetical protein YP_189451.1 1913066 D 176279 CDS YP_189452.1 57867760 3241983 complement(1913337..1914113) 1 NC_002976.3 identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase 1914113 3241983 SERP1891 Staphylococcus epidermidis RP62A N-acetylmuramoyl-L-alanine amidase YP_189452.1 1913337 R 176279 CDS YP_189453.1 57867761 3241984 complement(1914135..1914410) 1 NC_002976.3 hypothetical protein 1914410 3241984 SERP1892 Staphylococcus epidermidis RP62A hypothetical protein YP_189453.1 1914135 R 176279 CDS YP_189454.1 57867762 3241985 complement(1915044..1915994) 1 NC_002976.3 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 1915994 3241985 SERP1893 Staphylococcus epidermidis RP62A transcriptional regulator YP_189454.1 1915044 R 176279 CDS YP_189455.1 57867763 3241986 complement(1916183..1916998) 1 NC_002976.3 identified by match to protein family HMM PF00459; inositol monophosphatase 1916998 3241986 SERP1894 Staphylococcus epidermidis RP62A inositol monophosphatase YP_189455.1 1916183 R 176279 CDS YP_189456.1 57867764 3241987 1917426..1918115 1 NC_002976.3 DeoR family transcriptional regulator 1918115 3241987 SERP1895 Staphylococcus epidermidis RP62A DeoR family transcriptional regulator YP_189456.1 1917426 D 176279 CDS YP_189457.1 57867765 3241988 complement(1918294..1919040) 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 1919040 3241988 SERP1896 Staphylococcus epidermidis RP62A abortive infection family protein YP_189457.1 1918294 R 176279 CDS YP_189458.1 57867766 3241989 1919092..1919427 1 NC_002976.3 identified by similarity to OMNI:SA2307; hypothetical protein 1919427 3241989 SERP1897 Staphylococcus epidermidis RP62A hypothetical protein YP_189458.1 1919092 D 176279 CDS YP_189459.1 57867767 3241990 1919607..1920659 1 NC_002976.3 identified by similarity to GP:14245957; hypothetical protein 1920659 3241990 SERP1898 Staphylococcus epidermidis RP62A hypothetical protein YP_189459.1 1919607 D 176279 CDS YP_189460.1 57867774 3241997 1920656..1921543 1 NC_002976.3 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1921543 murQ 3241997 murQ Staphylococcus epidermidis RP62A N-acetylmuramic acid-6-phosphate etherase YP_189460.1 1920656 D 176279 CDS YP_189461.1 57867775 3241998 1921556..1922980 1 NC_002976.3 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system, IIBC components 1922980 3241998 SERP1900 Staphylococcus epidermidis RP62A PTS system, IIBC components YP_189461.1 1921556 D 176279 CDS YP_189462.1 57867776 3241999 1922994..1923866 1 NC_002976.3 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator 1923866 3241999 SERP1901 Staphylococcus epidermidis RP62A RpiR family phosphosugar-binding transcriptional regulator YP_189462.1 1922994 D 176279 CDS YP_189463.1 57867777 3242000 complement(1923989..1925365) 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 1925365 3242000 SERP1902 Staphylococcus epidermidis RP62A amino acid permease YP_189463.1 1923989 R 176279 CDS YP_189464.1 57867778 3242001 complement(1925480..1925578) 1 NC_002976.3 hypothetical protein 1925578 3242001 SERP1903 Staphylococcus epidermidis RP62A hypothetical protein YP_189464.1 1925480 R 176279 CDS YP_189465.1 57867779 3242002 1925764..1926120 1 NC_002976.3 identified by similarity to OMNI:SA2310; hypothetical protein 1926120 3242002 SERP1904 Staphylococcus epidermidis RP62A hypothetical protein YP_189465.1 1925764 D 176279 CDS YP_189466.1 57867780 3242003 1926117..1926302 1 NC_002976.3 hypothetical protein 1926302 3242003 SERP1905 Staphylococcus epidermidis RP62A hypothetical protein YP_189466.1 1926117 D 176279 CDS YP_189467.1 57867781 3242004 complement(1926619..1926807) 1 NC_002976.3 identified by similarity to OMNI:SA2312; hypothetical protein 1926807 3242004 SERP1906 Staphylococcus epidermidis RP62A hypothetical protein YP_189467.1 1926619 R 176279 CDS YP_189468.1 57867788 3241858 complement(1926825..1927460) 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase 1927460 3241858 SERP1907 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_189468.1 1926825 R 176279 CDS YP_189469.1 57867789 3241859 1927761..1928291 1 NC_002976.3 identified by similarity to OMNI:SA2315; hypothetical protein 1928291 3241859 SERP1908 Staphylococcus epidermidis RP62A hypothetical protein YP_189469.1 1927761 D 176279 CDS YP_189470.1 57867790 3241860 complement(1928396..1929985) 1 NC_002976.3 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, IIBC components 1929985 3241860 SERP1909 Staphylococcus epidermidis RP62A PTS system, IIBC components YP_189470.1 1928396 R 176279 CDS YP_189471.1 57867791 3241861 1930183..1930944 1 NC_002976.3 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; phosphosugar-binding transcriptional regulator 1930944 3241861 SERP1910 Staphylococcus epidermidis RP62A phosphosugar-binding transcriptional regulator YP_189471.1 1930183 D 176279 CDS YP_189472.1 57867792 3241862 1931485..1932498 1 NC_002976.3 RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 1932498 3241862 SERP1911 Staphylococcus epidermidis RP62A ISSep1-like transposase YP_189472.1 1931485 D 176279 CDS YP_189473.1 57867801 3241872 complement(1933161..1933673) 1 NC_002976.3 identified by similarity to OMNI:SA2318; match to protein family HMM PF05146; hypothetical protein 1933673 3241872 SERP1913 Staphylococcus epidermidis RP62A hypothetical protein YP_189473.1 1933161 R 176279 CDS YP_189474.1 57867802 3241873 complement(1933970..1935271) 1 NC_002976.3 identified by similarity to EGAD:15401; match to protein family HMM PF03553; Na+/H+ antiporter 1935271 3241873 SERP1914 Staphylococcus epidermidis RP62A Na+/H+ antiporter YP_189474.1 1933970 R 176279 CDS YP_189475.1 57867803 3241874 complement(1935577..1936164) 1 NC_002976.3 identified by similarity to OMNI:SA2320; hypothetical protein 1936164 3241874 SERP1915 Staphylococcus epidermidis RP62A hypothetical protein YP_189475.1 1935577 R 176279 CDS YP_189476.1 57867804 3241875 complement(1936208..1936819) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2551; hypothetical protein 1936819 3241875 SERP1916 Staphylococcus epidermidis RP62A hypothetical protein YP_189476.1 1936208 R 176279 CDS YP_189477.1 57867805 3241876 complement(1937106..1937987) 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase 1937987 3241876 SERP1917 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_189477.1 1937106 R 176279 CDS YP_189478.1 57867806 3241877 complement(1938084..1939202) 1 NC_002976.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 1939202 3241877 SERP1918 Staphylococcus epidermidis RP62A amidohydrolase YP_189478.1 1938084 R 176279 CDS YP_189479.1 57867807 3241878 complement(1939672..1940607) 1 NC_002976.3 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 1940607 hutG 3241878 hutG Staphylococcus epidermidis RP62A formimidoylglutamase YP_189479.1 1939672 R 176279 CDS YP_189480.1 57867808 3241879 1940855..1942003 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 1942003 3241879 SERP1920 Staphylococcus epidermidis RP62A abortive infection family protein YP_189480.1 1940855 D 176279 CDS YP_189481.1 57867817 3241888 1942195..1942302 1 NC_002976.3 hypothetical protein 1942302 3241888 SERP1921 Staphylococcus epidermidis RP62A hypothetical protein YP_189481.1 1942195 D 176279 CDS YP_189482.1 57867818 3241889 complement(1942408..1942587) 1 NC_002976.3 hypothetical protein 1942587 3241889 SERP1922 Staphylococcus epidermidis RP62A hypothetical protein YP_189482.1 1942408 R 176279 CDS YP_189483.1 57867819 3241890 1942565..1942750 1 NC_002976.3 hypothetical protein 1942750 3241890 SERP1923 Staphylococcus epidermidis RP62A hypothetical protein YP_189483.1 1942565 D 176279 CDS YP_189484.1 57867820 3241891 complement(1942989..1943681) 1 NC_002976.3 catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1943681 rpiA 3241891 rpiA Staphylococcus epidermidis RP62A ribose-5-phosphate isomerase A YP_189484.1 1942989 R 176279 CDS YP_189485.1 57867821 3241892 1943847..1944527 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2222; match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 1944527 3241892 SERP1925 Staphylococcus epidermidis RP62A hypothetical protein YP_189485.1 1943847 D 176279 CDS YP_189486.1 57867822 3241893 complement(1944600..1945610) 1 NC_002976.3 identified by similarity to EGAD:7416; match to protein family HMM PF01263; aldose 1-epimerase 1945610 galM 3241893 galM Staphylococcus epidermidis RP62A aldose 1-epimerase YP_189486.1 1944600 R 176279 CDS YP_189487.1 57867823 3241894 1946198..1947808 1 NC_002976.3 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 1947808 3241894 SERP1927 Staphylococcus epidermidis RP62A ribulokinase YP_189487.1 1946198 D 176279 CDS YP_189488.1 57867824 3241895 complement(1948055..1948156) 1 NC_002976.3 hypothetical protein 1948156 3241895 SERP1928 Staphylococcus epidermidis RP62A hypothetical protein YP_189488.1 1948055 R 176279 CDS YP_189489.1 57867825 3241896 1948267..1948377 1 NC_002976.3 hypothetical protein 1948377 3241896 SERP1929 Staphylococcus epidermidis RP62A hypothetical protein YP_189489.1 1948267 D 176279 CDS YP_189490.1 57867833 3241905 1949150..1949767 1 NC_002976.3 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 1949767 3241905 SERP1931 Staphylococcus epidermidis RP62A DNA-3-methyladenine glycosylase YP_189490.1 1949150 D 176279 CDS YP_189491.1 57867834 3241906 complement(1949922..1950725) 1 NC_002976.3 hypothetical protein 1950725 3241906 SERP1932 Staphylococcus epidermidis RP62A hypothetical protein YP_189491.1 1949922 R 176279 CDS YP_189492.1 57867835 3241907 complement(1950722..1951282) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1804; hypothetical protein 1951282 3241907 SERP1933 Staphylococcus epidermidis RP62A hypothetical protein YP_189492.1 1950722 R 176279 CDS YP_189493.1 57867836 3241908 complement(1951279..1951599) 1 NC_002976.3 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 1951599 3241908 SERP1934 Staphylococcus epidermidis RP62A PadR family transcriptional regulator YP_189493.1 1951279 R 176279 CDS YP_189494.1 57867837 3240437 1951916..1953124 1 NC_002976.3 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium:glutamate symporter 1953124 gltS 3240437 gltS Staphylococcus epidermidis RP62A sodium:glutamate symporter YP_189494.1 1951916 D 176279 CDS YP_189495.1 57867838 3240438 complement(1953279..1954328) 1 NC_002976.3 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1954328 fni-2 3240438 fni-2 Staphylococcus epidermidis RP62A isopentenyl pyrophosphate isomerase YP_189495.1 1953279 R 176279 CDS YP_189496.1 57865357 3242965 complement(1954368..1955315) 1 NC_002976.3 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 1955315 corA 3242965 corA Staphylococcus epidermidis RP62A magnesium and cobalt transport protein CorA YP_189496.1 1954368 R 176279 CDS YP_189497.1 57865366 3242289 1955422..1955898 1 NC_002976.3 identified by similarity to OMNI:SA2343; hypothetical protein 1955898 3242289 SERP1939 Staphylococcus epidermidis RP62A hypothetical protein YP_189497.1 1955422 D 176279 CDS YP_189498.1 57865367 3242290 1955901..1956290 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2234; hypothetical protein 1956290 3242290 SERP1940 Staphylococcus epidermidis RP62A hypothetical protein YP_189498.1 1955901 D 176279 CDS YP_189499.1 57865368 3242291 complement(1956426..1957325) 1 NC_002976.3 esterase 1957325 3242291 SERP1941 Staphylococcus epidermidis RP62A esterase YP_189499.1 1956426 R 176279 CDS YP_189500.1 57865369 3241279 1957543..1958175 1 NC_002976.3 hypothetical protein 1958175 3241279 SERP1942 Staphylococcus epidermidis RP62A hypothetical protein YP_189500.1 1957543 D 176279 CDS YP_189501.1 57865370 3241280 complement(1958158..1958313) 1 NC_002976.3 hypothetical protein 1958313 3241280 SERP1943 Staphylococcus epidermidis RP62A hypothetical protein YP_189501.1 1958158 R 176279 CDS YP_189502.1 57865371 3241281 complement(1958356..1960332) 1 NC_002976.3 identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1960332 3241281 SERP1944 Staphylococcus epidermidis RP62A EmrB/QacA family drug resistance transporter YP_189502.1 1958356 R 176279 CDS YP_189503.1 57865372 3241282 complement(1960345..1960992) 1 NC_002976.3 drug transporter 1960992 3241282 SERP1945 Staphylococcus epidermidis RP62A drug transporter YP_189503.1 1960345 R 176279 CDS YP_189504.1 57865373 3241283 1961133..1961684 1 NC_002976.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1961684 3241283 SERP1946 Staphylococcus epidermidis RP62A TetR family transcriptional regulator YP_189504.1 1961133 D 176279 CDS YP_189505.1 57865383 3242454 complement(1961721..1962932) 1 NC_002976.3 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710; tcaB protein 1962932 tcaB 3242454 tcaB Staphylococcus epidermidis RP62A tcaB protein YP_189505.1 1961721 R 176279 CDS YP_189506.1 57865384 3242455 complement(1962990..1964378) 1 NC_002976.3 tcaA protein 1964378 tcaA 3242455 tcaA Staphylococcus epidermidis RP62A tcaA protein YP_189506.1 1962990 R 176279 CDS YP_189507.1 57865385 3242456 complement(1964658..1965113) 1 NC_002976.3 identified by similarity to OMNI:SA2353; match to protein family HMM PF01047; TcaR family transcriptional regulator 1965113 tcaR 3242456 tcaR Staphylococcus epidermidis RP62A TcaR family transcriptional regulator YP_189507.1 1964658 R 176279 CDS YP_189508.1 57865386 3242457 1965301..1966257 1 NC_002976.3 identified by match to protein family HMM PF02698; hypothetical protein 1966257 3242457 SERP1950 Staphylococcus epidermidis RP62A hypothetical protein YP_189508.1 1965301 D 176279 CDS YP_189509.1 57865387 3242458 complement(1966538..1967206) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1967206 3242458 SERP1951 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189509.1 1966538 R 176279 CDS YP_189510.1 57865388 3242571 complement(1967206..1968258) 1 NC_002976.3 identified by match to protein family HMM PF02687; ABC transporter permease 1968258 3242571 SERP1952 Staphylococcus epidermidis RP62A ABC transporter permease YP_189510.1 1967206 R 176279 CDS YP_189511.1 57865389 3242572 1968390..1969064 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1969064 3242572 SERP1953 Staphylococcus epidermidis RP62A DNA-binding response regulator YP_189511.1 1968390 D 176279 CDS YP_189512.1 57865390 3242573 1969057..1970412 1 NC_002976.3 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1970412 3242573 SERP1954 Staphylococcus epidermidis RP62A sensor histidine kinase YP_189512.1 1969057 D 176279 CDS YP_189513.1 57865391 3242574 complement(1970556..1972034) 1 NC_002976.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1972034 mqo-1 3242574 mqo-1 Staphylococcus epidermidis RP62A malate:quinone oxidoreductase YP_189513.1 1970556 R 176279 CDS YP_189514.1 57865401 3242285 1972366..1973511 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1973511 3242285 SERP1956 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_189514.1 1972366 D 176279 CDS YP_189515.1 57865402 3242286 complement(1973716..1975317) 1 NC_002976.3 identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 1975317 3242286 SERP1957 Staphylococcus epidermidis RP62A L-lactate permease YP_189515.1 1973716 R 176279 CDS YP_189516.1 57865403 3241083 1975667..1977346 1 NC_002976.3 identified by match to protein family HMM PF04464; TagF domain-containing protein 1977346 3241083 SERP1958 Staphylococcus epidermidis RP62A TagF domain-containing protein YP_189516.1 1975667 D 176279 CDS YP_189517.1 57865404 3241084 complement(1977478..1978125) 1 NC_002976.3 lipoprotein 1978125 3241084 SERP1959 Staphylococcus epidermidis RP62A lipoprotein YP_189517.1 1977478 R 176279 CDS YP_189518.1 57865405 3241085 complement(1978254..1980419) 1 NC_002976.3 identified by similarity to GP:5924067; match to protein family HMM PF00535; match to protein family HMM PF04464; teichoic acid biosynthesis protein F 1980419 tagF 3241085 tagF Staphylococcus epidermidis RP62A teichoic acid biosynthesis protein F YP_189518.1 1978254 R 176279 CDS YP_189519.1 57865406 3241086 complement(1980691..1981230) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1981230 3241086 SERP1961 Staphylococcus epidermidis RP62A acetyltransferase YP_189519.1 1980691 R 176279 CDS YP_189520.1 57865407 3241087 1981471..1982463 1 NC_002976.3 identified by similarity to EGAD:15882; match to protein family HMM PF00107; alcohol dehydrogenase 1982463 3241087 SERP1962 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_189520.1 1981471 D 176279 CDS YP_189521.1 57865408 3241088 complement(1982520..1982921) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 1982921 3241088 SERP1963 Staphylococcus epidermidis RP62A acetyltransferase YP_189521.1 1982520 R 176279 CDS YP_189522.1 57865417 3242973 complement(1982990..1983406) 1 NC_002976.3 identified by similarity to OMNI:SA2371; hypothetical protein 1983406 3242973 SERP1964 Staphylococcus epidermidis RP62A hypothetical protein YP_189522.1 1982990 R 176279 CDS YP_189523.1 57865418 3240676 1986078..1987025 1 NC_002976.3 identified by match to protein family HMM PF01544; magnesium/cobalt transporter CorA 1987025 3240676 SERP1967 Staphylococcus epidermidis RP62A magnesium/cobalt transporter CorA YP_189523.1 1986078 D 176279 CDS YP_189524.1 57865419 3240677 complement(1987115..1988560) 1 NC_002976.3 identified by similarity to EGAD:18969; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, sucrose-specific IIBC components 1988560 3240677 SERP1968 Staphylococcus epidermidis RP62A PTS system, sucrose-specific IIBC components YP_189524.1 1987115 R 176279 CDS YP_189525.1 57865420 3240678 1988714..1989091 1 NC_002976.3 identified by similarity to GP:14248152; hypothetical protein 1989091 3240678 SERP1969 Staphylococcus epidermidis RP62A hypothetical protein YP_189525.1 1988714 D 176279 CDS YP_189526.1 57865421 3242544 1989454..1989549 1 NC_002976.3 hypothetical protein 1989549 3242544 SERP1970 Staphylococcus epidermidis RP62A hypothetical protein YP_189526.1 1989454 D 176279 CDS YP_189527.1 57865422 3242545 1989550..1989660 1 NC_002976.3 hypothetical protein 1989660 3242545 SERP1971 Staphylococcus epidermidis RP62A hypothetical protein YP_189527.1 1989550 D 176279 CDS YP_189528.1 57865431 3242500 1990253..1992358 1 NC_002976.3 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1992358 3242500 SERP1972 Staphylococcus epidermidis RP62A AraC family transcriptional regulator YP_189528.1 1990253 D 176279 CDS YP_189529.1 57865432 3242501 1992431..1992853 1 NC_002976.3 identified by similarity to EGAD:107318; general stress protein 26 1992853 3242501 SERP1973 Staphylococcus epidermidis RP62A general stress protein 26 YP_189529.1 1992431 D 176279 CDS YP_189530.1 57865433 3242502 1993044..1993394 1 NC_002976.3 identified by similarity to OMNI:SA2381; hypothetical protein 1993394 3242502 SERP1974 Staphylococcus epidermidis RP62A hypothetical protein YP_189530.1 1993044 D 176279 CDS YP_189531.1 57865434 3242503 complement(1993479..1993601) 1 NC_002976.3 hypothetical protein 1993601 3242503 SERP1975 Staphylococcus epidermidis RP62A hypothetical protein YP_189531.1 1993479 R 176279 CDS YP_189532.1 57865435 3242504 complement(1993677..1994957) 1 NC_002976.3 identified by similarity to EGAD:19948; match to protein family HMM PF00375; proton/sodium-glutamate symport protein 1994957 gltT 3242504 gltT Staphylococcus epidermidis RP62A proton/sodium-glutamate symport protein YP_189532.1 1993677 R 176279 CDS YP_189533.1 57865436 3242621 complement(1995122..1995487) 1 NC_002976.3 hypothetical protein 1995487 3242621 SERP1977 Staphylococcus epidermidis RP62A hypothetical protein YP_189533.1 1995122 R 176279 CDS YP_189534.1 57865437 3242622 complement(1995611..1996240) 1 NC_002976.3 identified by match to protein family HMM PF00881; nitroreductase 1996240 3242622 SERP1978 Staphylococcus epidermidis RP62A nitroreductase YP_189534.1 1995611 R 176279 CDS YP_189535.1 57865438 3242623 1996404..1996850 1 NC_002976.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1996850 sarZ 3242623 sarZ Staphylococcus epidermidis RP62A MarR family transcriptional regulator YP_189535.1 1996404 D 176279 CDS YP_189536.1 57865447 3242432 complement(1997556..1998719) 1 NC_002976.3 identified by similarity to EGAD:30454; match to protein family HMM PF00083; nitrite extrusion protein 1998719 3242432 SERP1980 Staphylococcus epidermidis RP62A nitrite extrusion protein YP_189536.1 1997556 R 176279 CDS YP_189537.1 57865448 3242433 complement(1998976..1999632) 1 NC_002976.3 identified by similarity to EGAD:24916; match to protein family HMM PF00072; match to protein family HMM PF00196; DegU family transcriptional regulator 1999632 3242433 SERP1981 Staphylococcus epidermidis RP62A DegU family transcriptional regulator YP_189537.1 1998976 R 176279 CDS YP_189538.1 57865449 3242434 complement(1999661..2000695) 1 NC_002976.3 identified by similarity to EGAD:18568; match to protein family HMM PF02518; sensor histidine kinase 2000695 3242434 SERP1982 Staphylococcus epidermidis RP62A sensor histidine kinase YP_189538.1 1999661 R 176279 CDS YP_189539.1 57865450 3242435 complement(2000705..2001157) 1 NC_002976.3 hypothetical protein 2001157 3242435 SERP1983 Staphylococcus epidermidis RP62A hypothetical protein YP_189539.1 2000705 R 176279 CDS YP_189540.1 57865451 3242436 complement(2001177..2001854) 1 NC_002976.3 identified by similarity to EGAD:30704; match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase, gamma subunit 2001854 narI 3242436 narI Staphylococcus epidermidis RP62A respiratory nitrate reductase, gamma subunit YP_189540.1 2001177 R 176279 CDS YP_189541.1 57865452 3242250 complement(2001847..2002437) 1 NC_002976.3 identified by similarity to EGAD:30705; match to protein family HMM PF02613; match to protein family HMM TIGR00684; respiratory nitrate reductase, delta subunit 2002437 narJ 3242250 narJ Staphylococcus epidermidis RP62A respiratory nitrate reductase, delta subunit YP_189541.1 2001847 R 176279 CDS YP_189542.1 57865453 3242251 complement(2002415..2003968) 1 NC_002976.3 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660; respiratory nitrate reductase, beta subunit 2003968 narH 3242251 narH Staphylococcus epidermidis RP62A respiratory nitrate reductase, beta subunit YP_189542.1 2002415 R 176279 CDS YP_189543.1 57865461 3241536 complement(2003958..2007641) 1 NC_002976.3 identified by similarity to EGAD:30702; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; respiratory nitrate reductase, alpha subunit 2007641 narG 3241536 narG Staphylococcus epidermidis RP62A respiratory nitrate reductase, alpha subunit YP_189543.1 2003958 R 176279 CDS YP_189544.1 57865462 3241537 complement(2007820..2008755) 1 NC_002976.3 identified by similarity to GP:4433641; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrinogen-III methylase SirB 2008755 3241537 SERP1988 Staphylococcus epidermidis RP62A uroporphyrinogen-III methylase SirB YP_189544.1 2007820 R 176279 CDS YP_189545.1 57865463 3241538 complement(2008746..2009060) 1 NC_002976.3 identified by similarity to EGAD:30823; match to protein family HMM PF00355; nitrite reductase [NAD(P)H], small subunit 2009060 nirD 3241538 nirD Staphylococcus epidermidis RP62A nitrite reductase [NAD(P)H], small subunit YP_189545.1 2008746 R 176279 CDS YP_189546.1 57865464 3241539 complement(2009063..2011468) 1 NC_002976.3 identified by similarity to EGAD:30822; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; nitrite reductase [NAD(P)H], large subunit 2011468 nirB 3241539 nirB Staphylococcus epidermidis RP62A nitrite reductase [NAD(P)H], large subunit YP_189546.1 2009063 R 176279 CDS YP_189547.1 57865465 3241540 complement(2011744..2011848) 1 NC_002976.3 hypothetical protein 2011848 3241540 SERP1991 Staphylococcus epidermidis RP62A hypothetical protein YP_189547.1 2011744 R 176279 CDS YP_189548.1 57865466 3241541 complement(2011906..2012625) 1 NC_002976.3 identified by similarity to GP:4433637; NirR family transcriptional regulator 2012625 nirR 3241541 nirR Staphylococcus epidermidis RP62A NirR family transcriptional regulator YP_189548.1 2011906 R 176279 CDS YP_189549.1 57865467 3242579 complement(2012615..2012731) 1 NC_002976.3 hypothetical protein 2012731 3242579 SERP1993 Staphylococcus epidermidis RP62A hypothetical protein YP_189549.1 2012615 R 176279 CDS YP_189550.1 57865477 3240570 2012875..2014350 1 NC_002976.3 identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein 2014350 3240570 SERP1994 Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_189550.1 2012875 D 176279 CDS YP_189551.1 57865478 3242372 2014631..2014786 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 2014786 3242372 SERP1995 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189551.1 2014631 D 176279 CDS YP_189552.1 57865479 3242371 complement(2015086..2015622) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 2015622 3242371 SERP1996 Staphylococcus epidermidis RP62A acetyltransferase YP_189552.1 2015086 R 176279 CDS YP_189553.1 57865480 3242416 complement(2016065..2016886) 1 NC_002976.3 identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 2016886 3242416 SERP1997 Staphylococcus epidermidis RP62A formate/nitrite transporter family protein YP_189553.1 2016065 R 176279 CDS YP_189554.1 57865481 3242417 complement(2017121..2017591) 1 NC_002976.3 identified by similarity to OMNI:SA2402; match to protein family HMM PF05146; hypothetical protein 2017591 3242417 SERP1998 Staphylococcus epidermidis RP62A hypothetical protein YP_189554.1 2017121 R 176279 CDS YP_189555.1 57865353 3242961 complement(2017873..2018469) 1 NC_002976.3 glutaredoxin 2018469 3242961 SERP1999 Staphylococcus epidermidis RP62A glutaredoxin YP_189555.1 2017873 R 176279 CDS YP_189556.1 57865354 3242962 complement(2018493..2018855) 1 NC_002976.3 lipoprotein 2018855 3242962 SERP2000 Staphylococcus epidermidis RP62A lipoprotein YP_189556.1 2018493 R 176279 CDS YP_189557.1 57865355 3242963 2019216..2020463 1 NC_002976.3 identified by match to protein family HMM PF02388; fmhA protein 2020463 fmhA 3242963 fmhA Staphylococcus epidermidis RP62A fmhA protein YP_189557.1 2019216 D 176279 CDS YP_189558.1 57865356 3242964 2020849..2020995 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 2020995 3242964 SERP2002 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189558.1 2020849 D 176279 CDS YP_189559.1 57865358 3242966 complement(2021139..2021870) 1 NC_002976.3 identified by similarity to EGAD:33113; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 2021870 3242966 SERP2003 Staphylococcus epidermidis RP62A amino acid ABC transporter ATP-binding protein YP_189559.1 2021139 R 176279 CDS YP_189560.1 57865359 3240560 complement(2021867..2022586) 1 NC_002976.3 identified by similarity to EGAD:28090; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 2022586 3240560 SERP2004 Staphylococcus epidermidis RP62A amino acid ABC transporter permease YP_189560.1 2021867 R 176279 CDS YP_189561.1 57865360 3240561 complement(2022567..2023355) 1 NC_002976.3 identified by similarity to SP:P42199; match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein 2023355 3240561 SERP2005 Staphylococcus epidermidis RP62A amino acid ABC transporter amino acid-binding protein YP_189561.1 2022567 R 176279 CDS YP_189562.1 57865361 3240562 2023570..2023674 1 NC_002976.3 identified by similarity to OMNI:SA2414; hypothetical protein 2023674 3240562 SERP2006 Staphylococcus epidermidis RP62A hypothetical protein YP_189562.1 2023570 D 176279 CDS YP_189563.1 57865362 3240563 complement(2023860..2024546) 1 NC_002976.3 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 2024546 gpmA 3240563 gpmA Staphylococcus epidermidis RP62A phosphoglyceromutase YP_189563.1 2023860 R 176279 CDS YP_189564.1 57865363 3240564 complement(2024788..2025669) 1 NC_002976.3 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2025669 3240564 SERP2008 Staphylococcus epidermidis RP62A cation efflux family protein YP_189564.1 2024788 R 176279 CDS YP_189565.1 57865364 3242287 complement(2025960..2026346) 1 NC_002976.3 identified by match to protein family HMM PF04138; hypothetical protein 2026346 3242287 SERP2009 Staphylococcus epidermidis RP62A hypothetical protein YP_189565.1 2025960 R 176279 CDS YP_189566.1 57865365 3242288 complement(2026367..2027839) 1 NC_002976.3 identified by similarity to OMNI:SA1738; hypothetical protein 2027839 3242288 SERP2010 Staphylococcus epidermidis RP62A hypothetical protein YP_189566.1 2026367 R 176279 CDS YP_189567.1 57865374 3241284 complement(2028090..2029262) 1 NC_002976.3 identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 2029262 3241284 SERP2011 Staphylococcus epidermidis RP62A IS256-like transposase YP_189567.1 2028090 R 176279 CDS YP_189568.1 57865375 3241285 2029466..2030617 1 NC_002976.3 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2 2030617 garK 3241285 garK Staphylococcus epidermidis RP62A glycerate kinase 2 YP_189568.1 2029466 D 176279 CDS YP_189569.1 57865376 3240541 2030648..2031349 1 NC_002976.3 hypothetical protein 2031349 3240541 SERP2013 Staphylococcus epidermidis RP62A hypothetical protein YP_189569.1 2030648 D 176279 CDS YP_189570.1 57865377 3240542 2031613..2032812 1 NC_002976.3 identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710; bicyclomycin resistance protein 2032812 bcr 3240542 bcr Staphylococcus epidermidis RP62A bicyclomycin resistance protein YP_189570.1 2031613 D 176279 CDS YP_189571.1 57865378 3240543 2033203..2033727 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2319; hypothetical protein 2033727 3240543 SERP2015 Staphylococcus epidermidis RP62A hypothetical protein YP_189571.1 2033203 D 176279 CDS YP_189572.1 57865379 3240544 complement(2033790..2034599) 1 NC_002976.3 identified by similarity to OMNI:SA2440; match to protein family HMM PF00149; match to protein family HMM PF02549; hypothetical protein 2034599 3240544 SERP2016 Staphylococcus epidermidis RP62A hypothetical protein YP_189572.1 2033790 R 176279 CDS YP_189573.1 57865380 3240545 2034917..2036293 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 2036293 3240545 SERP2017 Staphylococcus epidermidis RP62A amino acid permease YP_189573.1 2034917 D 176279 CDS YP_189574.1 57865381 3240546 complement(2036441..2038270) 1 NC_002976.3 identified by match to protein family HMM PF00324; hypothetical protein 2038270 3240546 SERP2018 Staphylococcus epidermidis RP62A hypothetical protein YP_189574.1 2036441 R 176279 CDS YP_189575.1 57865382 3240547 2038557..2040074 1 NC_002976.3 identified by similarity to GP:9246437; match to protein family HMM PF00144; fmtA-like protein 2040074 3240547 SERP2019 Staphylococcus epidermidis RP62A fmtA-like protein YP_189575.1 2038557 D 176279 CDS YP_189576.1 57865392 3242575 complement(2040104..2040196) 1 NC_002976.3 hypothetical protein 2040196 3242575 SERP2020 Staphylococcus epidermidis RP62A hypothetical protein YP_189576.1 2040104 R 176279 CDS YP_189577.1 57865393 3242576 2040235..2041071 1 NC_002976.3 identified by match to protein family HMM PF02096; hypothetical protein 2041071 3242576 SERP2021 Staphylococcus epidermidis RP62A hypothetical protein YP_189577.1 2040235 D 176279 CDS YP_189578.1 57865394 3242577 complement(2041194..2042126) 1 NC_002976.3 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 2042126 3242577 SERP2022 Staphylococcus epidermidis RP62A 2-dehydropantoate 2-reductase YP_189578.1 2041194 R 176279 CDS YP_189579.1 57865395 3242578 complement(2042550..2043950) 1 NC_002976.3 identified by match to protein family HMM PF00083; transporter 2043950 3242578 SERP2023 Staphylococcus epidermidis RP62A transporter YP_189579.1 2042550 R 176279 CDS YP_189580.1 57865396 3242280 2044375..2046150 1 NC_002976.3 identified by similarity to EGAD:42940; match to protein family HMM PF02518; sensor histidine kinase LytS 2046150 lytS 3242280 lytS Staphylococcus epidermidis RP62A sensor histidine kinase LytS YP_189580.1 2044375 D 176279 CDS YP_189581.1 57865397 3242281 2046131..2046889 1 NC_002976.3 identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397; two-component response regulator 2046889 lytR 3242281 lytR Staphylococcus epidermidis RP62A two-component response regulator YP_189581.1 2046131 D 176279 CDS YP_189582.1 57865398 3242282 2047024..2047482 1 NC_002976.3 negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 2047482 lrgA 3242282 lrgA Staphylococcus epidermidis RP62A murein hydrolase regulator LrgA YP_189582.1 2047024 D 176279 CDS YP_189583.1 57865399 3242283 2047486..2048187 1 NC_002976.3 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 2048187 lrgB 3242283 lrgB Staphylococcus epidermidis RP62A antiholin-like protein LrgB YP_189583.1 2047486 D 176279 CDS YP_189584.1 57865400 3242284 complement(2048369..2049064) 1 NC_002976.3 identified by similarity to EGAD:109206; match to protein family HMM PF00528; amino acid ABC transporter permease 2049064 3242284 SERP2028 Staphylococcus epidermidis RP62A amino acid ABC transporter permease YP_189584.1 2048369 R 176279 CDS YP_189585.1 57865409 3241089 complement(2049064..2050008) 1 NC_002976.3 identified by similarity to EGAD:109190; match to protein family HMM PF04069; amino acid ABC transporter amino acid-binding protein 2050008 3241089 SERP2029 Staphylococcus epidermidis RP62A amino acid ABC transporter amino acid-binding protein YP_189585.1 2049064 R 176279 CDS YP_189586.1 57865410 3241090 complement(2050025..2050660) 1 NC_002976.3 identified by similarity to EGAD:109210; match to protein family HMM PF00528; amino acid ABC transporter permease 2050660 3241090 SERP2030 Staphylococcus epidermidis RP62A amino acid ABC transporter permease YP_189586.1 2050025 R 176279 CDS YP_189587.1 57865411 3242967 complement(2050663..2051919) 1 NC_002976.3 identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; amino acid ABC transporter ATP-binding protein 2051919 3242967 SERP2031 Staphylococcus epidermidis RP62A amino acid ABC transporter ATP-binding protein YP_189587.1 2050663 R 176279 CDS YP_189588.1 57865412 3242968 2052409..2053461 1 NC_002976.3 identified by match to protein family HMM PF00107; sorbitol dehydrogenase 2053461 3242968 SERP2032 Staphylococcus epidermidis RP62A sorbitol dehydrogenase YP_189588.1 2052409 D 176279 CDS YP_189589.1 57865413 3242969 complement(2053597..2053806) 1 NC_002976.3 hypothetical protein 2053806 3242969 SERP2033 Staphylococcus epidermidis RP62A hypothetical protein YP_189589.1 2053597 R 176279 CDS YP_189590.1 57865414 3242970 2054061..2055740 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 2055740 3242970 SERP2034 Staphylococcus epidermidis RP62A amino acid permease YP_189590.1 2054061 D 176279 CDS YP_189591.1 57865415 3242971 2056056..2057411 1 NC_002976.3 identified by match to protein family HMM PF00135; carboxylesterase 2057411 3242971 SERP2035 Staphylococcus epidermidis RP62A carboxylesterase YP_189591.1 2056056 D 176279 CDS YP_189592.1 57865416 3242972 complement(2057494..2058672) 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator superfamily protein 2058672 3242972 SERP2036 Staphylococcus epidermidis RP62A major facilitator superfamily protein YP_189592.1 2057494 R 176279 CDS YP_189593.1 57865423 3242546 complement(2058811..2059587) 1 NC_002976.3 identified by similarity to EGAD:91417; match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 2059587 3242546 SERP2037 Staphylococcus epidermidis RP62A hypothetical protein YP_189593.1 2058811 R 176279 CDS YP_189594.1 57865424 3242547 complement(2059580..2060242) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2060242 3242547 SERP2038 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189594.1 2059580 R 176279 CDS YP_189595.1 57865425 3242548 complement(2060538..2060720) 1 NC_002976.3 identified by similarity to OMNI:SA2306; hypothetical protein 2060720 3242548 SERP2039 Staphylococcus epidermidis RP62A hypothetical protein YP_189595.1 2060538 R 176279 CDS YP_189596.1 57865426 3242549 complement(2060849..2061631) 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 2061631 3242549 SERP2040 Staphylococcus epidermidis RP62A abortive infection family protein YP_189596.1 2060849 R 176279 CDS YP_189597.1 57865427 3242550 2061776..2063353 1 NC_002976.3 identified by match to protein family HMM PF01645; glutamate synthase-related protein 2063353 3242550 SERP2041 Staphylococcus epidermidis RP62A glutamate synthase-related protein YP_189597.1 2061776 D 176279 CDS YP_189598.1 57865428 3242551 complement(2063406..2063873) 1 NC_002976.3 lipoprotein 2063873 3242551 SERP2042 Staphylococcus epidermidis RP62A lipoprotein YP_189598.1 2063406 R 176279 CDS YP_189599.1 57865429 3242498 2064057..2065133 1 NC_002976.3 identified by match to protein family HMM PF05343; M42 family peptidase 2065133 3242498 SERP2043 Staphylococcus epidermidis RP62A M42 family peptidase YP_189599.1 2064057 D 176279 CDS YP_189600.1 57865430 3242499 2065150..2065338 1 NC_002976.3 hypothetical protein 2065338 3242499 SERP2044 Staphylococcus epidermidis RP62A hypothetical protein YP_189600.1 2065150 D 176279 CDS YP_189601.1 57865439 3242624 complement(2065501..2066319) 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase 2066319 3242624 SERP2045 Staphylococcus epidermidis RP62A short chain dehydrogenase YP_189601.1 2065501 R 176279 CDS YP_189602.1 57865440 3242625 2066632..2068164 1 NC_002976.3 identified by match to protein family HMM PF02541; exopolyphosphatase 2068164 3242625 SERP2046 Staphylococcus epidermidis RP62A exopolyphosphatase YP_189602.1 2066632 D 176279 CDS YP_189603.1 57865441 3242626 2068227..2070392 1 NC_002976.3 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2070392 ppk 3242626 ppk Staphylococcus epidermidis RP62A polyphosphate kinase YP_189603.1 2068227 D 176279 CDS YP_189604.1 57865442 3242627 complement(2070559..2071815) 1 NC_002976.3 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2071815 3242627 SERP2048 Staphylococcus epidermidis RP62A acetylornithine deacetylase YP_189604.1 2070559 R 176279 CDS YP_189605.1 57865443 3242628 complement(2071904..2072596) 1 NC_002976.3 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2072596 3242628 SERP2049 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_189605.1 2071904 R 176279 CDS YP_189606.1 57865444 3242429 2072959..2073105 1 NC_002976.3 identified by similarity to OMNI:SA2489; hypothetical protein 2073105 3242429 SERP2050 Staphylococcus epidermidis RP62A hypothetical protein YP_189606.1 2072959 D 176279 CDS YP_189607.1 57865445 3242430 complement(2073388..2073579) 1 NC_002976.3 identified by similarity to OMNI:SA2491; hypothetical protein 2073579 3242430 SERP2051 Staphylococcus epidermidis RP62A hypothetical protein YP_189607.1 2073388 R 176279 CDS YP_189608.1 57865446 3242431 complement(2073731..2076589) 1 NC_002976.3 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; helicase 2076589 3242431 SERP2052 Staphylococcus epidermidis RP62A helicase YP_189608.1 2073731 R 176279 CDS YP_189609.1 57865454 3242252 complement(2076591..2076989) 1 NC_002976.3 identified by match to protein family HMM PF00293; MutT/nudix family protein 2076989 3242252 SERP2053 Staphylococcus epidermidis RP62A MutT/nudix family protein YP_189609.1 2076591 R 176279 CDS YP_189610.1 57865455 3242253 complement(2077256..2078746) 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 2078746 3242253 SERP2054 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_189610.1 2077256 R 176279 CDS YP_189611.1 57865456 3242254 2078964..2080604 1 NC_002976.3 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2080604 3242254 SERP2055 Staphylococcus epidermidis RP62A phosphoglucomutase/phosphomannomutase YP_189611.1 2078964 D 176279 CDS YP_189612.1 57865457 3242255 complement(2080818..2081684) 1 NC_002976.3 identified by similarity to EGAD:16704; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 2081684 galU 3242255 galU Staphylococcus epidermidis RP62A UTP-glucose-1-phosphate uridylyltransferase YP_189612.1 2080818 R 176279 CDS YP_189613.1 57865458 3242256 complement(2081933..2083291) 1 NC_002976.3 identified by similarity to EGAD:19179; match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate transporter, permease protein 2083291 gntP 3242256 gntP Staphylococcus epidermidis RP62A gluconate transporter, permease protein YP_189613.1 2081933 R 176279 CDS YP_189614.1 57865459 3242257 complement(2083341..2084882) 1 NC_002976.3 identified by similarity to EGAD:30308; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314; gluconokinase 2084882 gntK 3242257 gntK Staphylococcus epidermidis RP62A gluconokinase YP_189614.1 2083341 R 176279 CDS YP_189615.1 57865460 3241535 complement(2084906..2085586) 1 NC_002976.3 identified by similarity to EGAD:17516; match to protein family HMM PF00392; gluconate operon transcriptional repressor 2085586 gntR 3241535 gntR Staphylococcus epidermidis RP62A gluconate operon transcriptional repressor YP_189615.1 2084906 R 176279 CDS YP_189616.1 57865468 3242580 2085955..2087313 1 NC_002976.3 identified by similarity to EGAD:8163; match to protein family HMM PF00083; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 2087313 glpT 3242580 glpT Staphylococcus epidermidis RP62A glycerol-3-phosphate transporter YP_189616.1 2085955 D 176279 CDS YP_189617.1 57865469 3242581 complement(2087471..2088187) 1 NC_002976.3 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2088187 3242581 SERP2061 Staphylococcus epidermidis RP62A MerR family transcriptional regulator YP_189617.1 2087471 R 176279 CDS YP_189618.1 57865470 3242582 complement(2088206..2088304) 1 NC_002976.3 hypothetical protein 2088304 3242582 SERP2062 Staphylococcus epidermidis RP62A hypothetical protein YP_189618.1 2088206 R 176279 CDS YP_189619.1 57865471 3242583 complement(2088273..2089148) 1 NC_002976.3 identified by similarity to SP:P22862; esterase 2089148 3242583 SERP2063 Staphylococcus epidermidis RP62A esterase YP_189619.1 2088273 R 176279 CDS YP_189620.1 57865472 3242584 2089454..2090371 1 NC_002976.3 identified by match to protein family HMM PF01569; PAP2 family protein 2090371 3242584 SERP2064 Staphylococcus epidermidis RP62A PAP2 family protein YP_189620.1 2089454 D 176279 CDS YP_189621.1 57865473 3242585 complement(2090491..2091192) 1 NC_002976.3 identified by similarity to OMNI:SA2518; match to protein family HMM PF04607; hypothetical protein 2091192 3242585 SERP2065 Staphylococcus epidermidis RP62A hypothetical protein YP_189621.1 2090491 R 176279 CDS YP_189622.1 57865474 3242586 complement(2091456..2091869) 1 NC_002976.3 identified by similarity to EGAD:108077; hypothetical protein 2091869 3242586 SERP2066 Staphylococcus epidermidis RP62A hypothetical protein YP_189622.1 2091456 R 176279 CDS YP_189623.1 57865475 3240568 complement(2091947..2093863) 1 NC_002976.3 hypothetical protein 2093863 3240568 SERP2067 Staphylococcus epidermidis RP62A hypothetical protein YP_189623.1 2091947 R 176279 CDS YP_189624.1 57865476 3240569 complement(2094025..2094315) 1 NC_002976.3 identified by similarity to OMNI:NTL01HSA00233; match to protein family HMM PF02619; match to protein family HMM PF03992; hypothetical protein 2094315 3240569 SERP2068 Staphylococcus epidermidis RP62A hypothetical protein YP_189624.1 2094025 R 176279 CDS YP_189625.1 57865485 3242376 complement(2094468..2095742) 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator superfamily protein 2095742 3242376 SERP2069 Staphylococcus epidermidis RP62A major facilitator superfamily protein YP_189625.1 2094468 R 176279 CDS YP_189626.1 57865486 3240573 2096555..2097013 1 NC_002976.3 identified by similarity to EGAD:22506; thiamine-phosphate pyrophosphorylase 2097013 3240573 SERP2070 Staphylococcus epidermidis RP62A thiamine-phosphate pyrophosphorylase YP_189626.1 2096555 D 176279 CDS YP_189627.1 57865487 3240574 2097006..2098124 1 NC_002976.3 identified by match to protein family HMM PF01266; glycine oxidase 2098124 3240574 SERP2071 Staphylococcus epidermidis RP62A glycine oxidase YP_189627.1 2097006 D 176279 CDS YP_189628.1 57865488 3240575 2098108..2098308 1 NC_002976.3 identified by similarity to EGAD:143246; match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2098308 thiS 3240575 thiS Staphylococcus epidermidis RP62A thiamine biosynthesis protein ThiS YP_189628.1 2098108 D 176279 CDS YP_189629.1 57865489 3240576 2098310..2099077 1 NC_002976.3 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2099077 thiG 3240576 thiG Staphylococcus epidermidis RP62A thiazole synthase YP_189629.1 2098310 D 176279 CDS YP_189630.1 57865490 3240577 2099079..2100077 1 NC_002976.3 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; HesA/MoeB/ThiF family protein 2100077 3240577 SERP2074 Staphylococcus epidermidis RP62A HesA/MoeB/ThiF family protein YP_189630.1 2099079 D 176279 CDS YP_189631.1 57865491 3240578 2100185..2100799 1 NC_002976.3 identified by match to protein family HMM PF00597; DedA family protein 2100799 3240578 SERP2075 Staphylococcus epidermidis RP62A DedA family protein YP_189631.1 2100185 D 176279 CDS YP_189632.1 57865492 3241748 2100973..2102937 1 NC_002976.3 identified by similarity to EGAD:37656; fructose-1,6-bisphosphatase 2102937 3241748 SERP2076 Staphylococcus epidermidis RP62A fructose-1,6-bisphosphatase YP_189632.1 2100973 D 176279 CDS YP_189633.1 57865501 3241787 complement(2103160..2104947) 1 NC_002976.3 identified by match to protein family HMM PF00999; Na+/H+ antiporter 2104947 3241787 SERP2077 Staphylococcus epidermidis RP62A Na+/H+ antiporter YP_189633.1 2103160 R 176279 CDS YP_189634.1 57865502 3240904 2105085..2105213 1 NC_002976.3 hypothetical protein 2105213 3240904 SERP2078 Staphylococcus epidermidis RP62A hypothetical protein YP_189634.1 2105085 D 176279 CDS YP_189635.1 57865503 3240905 2105295..2106344 1 NC_002976.3 identified by similarity to OMNI:SA2528; hypothetical protein 2106344 3240905 SERP2079 Staphylococcus epidermidis RP62A hypothetical protein YP_189635.1 2105295 D 176279 CDS YP_189636.1 57865504 3240906 2106578..2108017 1 NC_002976.3 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2108017 3240906 SERP2080 Staphylococcus epidermidis RP62A aldehyde dehydrogenase YP_189636.1 2106578 D 176279 CDS YP_189637.1 57865505 3240907 complement(2108088..2109035) 1 NC_002976.3 identified by match to protein family HMM PF01297; adhesion lipoprotein 2109035 3240907 SERP2081 Staphylococcus epidermidis RP62A adhesion lipoprotein YP_189637.1 2108088 R 176279 CDS YP_189638.1 57865482 3242373 2109202..2109483 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 2109483 3242373 SERP2082 Staphylococcus epidermidis RP62A acetyltransferase YP_189638.1 2109202 D 176279 CDS YP_189639.1 57865483 3242374 2109745..2110542 1 NC_002976.3 identified by match to protein family HMM PF00903; glyoxalase 2110542 3242374 SERP2083 Staphylococcus epidermidis RP62A glyoxalase YP_189639.1 2109745 D 176279 CDS YP_189640.1 57865484 3242375 complement(2111487..2112980) 1 NC_002976.3 identified by similarity to EGAD:15875; match to protein family HMM PF00171; aldehyde dehydrogenase 2112980 aldA-2 3242375 aldA-2 Staphylococcus epidermidis RP62A aldehyde dehydrogenase YP_189640.1 2111487 R 176279 CDS YP_189641.1 57865493 3241749 complement(2112980..2113111) 1 NC_002976.3 hypothetical protein 2113111 3241749 SERP2085 Staphylococcus epidermidis RP62A hypothetical protein YP_189641.1 2112980 R 176279 CDS YP_189642.1 57865494 3241780 complement(2113358..2114020) 1 NC_002976.3 identified by match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase 2114020 frp 3241780 frp Staphylococcus epidermidis RP62A NAD(P)H-flavin oxidoreductase YP_189642.1 2113358 R 176279 CDS YP_189643.1 57865495 3241781 2114267..2115259 1 NC_002976.3 catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2115259 3241781 SERP2087 Staphylococcus epidermidis RP62A D-lactate dehydrogenase YP_189643.1 2114267 D 176279 CDS YP_189644.1 57865496 3241782 complement(2115446..2116255) 1 NC_002976.3 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 2116255 3241782 SERP2088 Staphylococcus epidermidis RP62A HAD superfamily hydrolase YP_189644.1 2115446 R 176279 CDS YP_189645.1 57865497 3241783 complement(2116600..2117211) 1 NC_002976.3 identified by similarity to GP:5726436; match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 2117211 srtA 3241783 srtA Staphylococcus epidermidis RP62A sortase YP_189645.1 2116600 R 176279 CDS YP_189646.1 57865498 3241784 2117387..2117881 1 NC_002976.3 identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 2117881 3241784 SERP2090 Staphylococcus epidermidis RP62A phosphinothricin acetyltransferase YP_189646.1 2117387 D 176279 CDS YP_189647.1 57865499 3241785 complement(2117944..2118120) 1 NC_002976.3 hypothetical protein 2118120 3241785 SERP2091 Staphylococcus epidermidis RP62A hypothetical protein YP_189647.1 2117944 R 176279 CDS YP_189648.1 57865500 3241786 2118445..2118600 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 2118600 3241786 SERP2092 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189648.1 2118445 D 176279 CDS YP_189649.1 57865509 3240911 complement(2118693..2118794) 1 NC_002976.3 hypothetical protein 2118794 3240911 SERP2093 Staphylococcus epidermidis RP62A hypothetical protein YP_189649.1 2118693 R 176279 CDS YP_189650.1 57865510 3242446 complement(2118833..2119732) 1 NC_002976.3 identified by similarity to EGAD:154938; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent, alpha subunit 2119732 sdhA 3242446 sdhA Staphylococcus epidermidis RP62A L-serine dehydratase, iron-sulfur-dependent, alpha subunit YP_189650.1 2118833 R 176279 CDS YP_189651.1 57865511 3242447 complement(2119745..2120428) 1 NC_002976.3 identified by similarity to SP:P33074; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent, beta subunit 2120428 sdhB 3242447 sdhB Staphylococcus epidermidis RP62A L-serine dehydratase, iron-sulfur-dependent, beta subunit YP_189651.1 2119745 R 176279 CDS YP_189652.1 57865512 3242448 complement(2120428..2121471) 1 NC_002976.3 identified by similarity to EGAD:33437; perfringolysin O regulator protein 2121471 3242448 SERP2096 Staphylococcus epidermidis RP62A perfringolysin O regulator protein YP_189652.1 2120428 R 176279 CDS YP_189653.1 57865513 3242449 2121760..2121873 1 NC_002976.3 hypothetical protein 2121873 3242449 SERP2097 Staphylococcus epidermidis RP62A hypothetical protein YP_189653.1 2121760 D 176279 CDS YP_189654.1 57865514 3242450 complement(2122124..2122909) 1 NC_002976.3 hypothetical protein 2122909 3242450 SERP2098 Staphylococcus epidermidis RP62A hypothetical protein YP_189654.1 2122124 R 176279 CDS YP_189655.1 57865515 3242451 complement(2123184..2124674) 1 NC_002976.3 identified by similarity to EGAD:108807; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; D-xylulose kinase 2124674 xylB 3242451 xylB Staphylococcus epidermidis RP62A D-xylulose kinase YP_189655.1 2123184 R 176279 CDS YP_189656.1 57865524 3242369 complement(2124965..2125888) 1 NC_002976.3 identified by similarity to EGAD:19594; match to protein family HMM PF00294; ribokinase 2125888 rbsK 3242369 rbsK Staphylococcus epidermidis RP62A ribokinase YP_189656.1 2124965 R 176279 CDS YP_189657.1 57865525 3242370 complement(2125942..2126346) 1 NC_002976.3 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2126346 3242370 SERP2101 Staphylococcus epidermidis RP62A D-ribose pyranase YP_189657.1 2125942 R 176279 CDS YP_189658.1 57865526 3241121 complement(2126368..2127249) 1 NC_002976.3 hypothetical protein 2127249 3241121 SERP2102 Staphylococcus epidermidis RP62A hypothetical protein YP_189658.1 2126368 R 176279 CDS YP_189659.1 57865527 3241122 complement(2127505..2129109) 1 NC_002976.3 identified by similarity to EGAD:45768; match to protein family HMM PF01019; gamma-glutamyltranspeptidase 2129109 dep 3241122 dep Staphylococcus epidermidis RP62A gamma-glutamyltranspeptidase YP_189659.1 2127505 R 176279 CDS YP_189660.1 57865528 3241123 complement(2129112..2129288) 1 NC_002976.3 hypothetical protein 2129288 3241123 SERP2104 Staphylococcus epidermidis RP62A hypothetical protein YP_189660.1 2129112 R 176279 CDS YP_189661.1 57865529 3241124 complement(2129263..2130336) 1 NC_002976.3 identified by similarity to EGAD:20151; capA protein 2130336 capA 3241124 capA Staphylococcus epidermidis RP62A capA protein YP_189661.1 2129263 R 176279 CDS YP_189662.1 57865530 3241125 complement(2130360..2130812) 1 NC_002976.3 identified by similarity to EGAD:14793; capC protein 2130812 capC 3241125 capC Staphylococcus epidermidis RP62A capC protein YP_189662.1 2130360 R 176279 CDS YP_189663.1 57865531 3241126 complement(2130814..2131971) 1 NC_002976.3 capB protein 2131971 capB 3241126 capB Staphylococcus epidermidis RP62A capB protein YP_189663.1 2130814 R 176279 CDS YP_189664.1 57865532 3241127 2132420..2132737 1 NC_002976.3 hypothetical protein 2132737 3241127 SERP2108 Staphylococcus epidermidis RP62A hypothetical protein YP_189664.1 2132420 D 176279 CDS YP_189665.1 57865533 3240756 complement(2132809..2133789) 1 NC_002976.3 identified by similarity to OMNI:SA2549; esterase 2133789 3240756 SERP2109 Staphylococcus epidermidis RP62A esterase YP_189665.1 2132809 R 176279 CDS YP_189666.1 57865541 3242479 complement(2133872..2134720) 1 NC_002976.3 identified by similarity to EGAD:108622; match to protein family HMM PF02588; hypothetical protein 2134720 3242479 SERP2110 Staphylococcus epidermidis RP62A hypothetical protein YP_189666.1 2133872 R 176279 CDS YP_189667.1 57865542 3242480 complement(2134903..2135229) 1 NC_002976.3 thioredoxin 2135229 3242480 SERP2111 Staphylococcus epidermidis RP62A thioredoxin YP_189667.1 2134903 R 176279 CDS YP_189668.1 57865543 3242481 2135452..2136504 1 NC_002976.3 identified by similarity to EGAD:21839; match to protein family HMM PF00107; alcohol dehydrogenase 2136504 3242481 SERP2112 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_189668.1 2135452 D 176279 CDS YP_189669.1 57865544 3242482 complement(2136569..2137336) 1 NC_002976.3 identified by match to protein family HMM PF02517; abortive infection family protein 2137336 3242482 SERP2113 Staphylococcus epidermidis RP62A abortive infection family protein YP_189669.1 2136569 R 176279 CDS YP_189670.1 57865545 3242483 complement(2137627..2139654) 1 NC_002976.3 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system, IIABC components 2139654 3242483 SERP2114 Staphylococcus epidermidis RP62A PTS system, IIABC components YP_189670.1 2137627 R 176279 CDS YP_189671.1 57865546 3242484 complement(2139898..2141637) 1 NC_002976.3 catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 2141637 3242484 SERP2115 Staphylococcus epidermidis RP62A pyruvate oxidase YP_189671.1 2139898 R 176279 CDS YP_189672.1 57865547 3242485 complement(2141687..2142376) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2425; match to protein family HMM PF04172; hypothetical protein 2142376 3242485 SERP2116 Staphylococcus epidermidis RP62A hypothetical protein YP_189672.1 2141687 R 176279 CDS YP_189673.1 57865548 3242486 complement(2142373..2142765) 1 NC_002976.3 identified by similarity to OMNI:SA2554; match to protein family HMM PF03788; LrgA family protein 2142765 3242486 SERP2117 Staphylococcus epidermidis RP62A LrgA family protein YP_189673.1 2142373 R 176279 CDS YP_189674.1 57865557 3242437 complement(2143077..2143961) 1 NC_002976.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2143961 3242437 SERP2118 Staphylococcus epidermidis RP62A LysR family transcriptional regulator YP_189674.1 2143077 R 176279 CDS YP_189675.1 57865558 3242438 2144149..2144364 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2428; hypothetical protein 2144364 3242438 SERP2119 Staphylococcus epidermidis RP62A hypothetical protein YP_189675.1 2144149 D 176279 CDS YP_189676.1 57865559 3242439 2144622..2145053 1 NC_002976.3 identified by match to protein family HMM PF05257; secretory antigen precursor SsaA-related protein 2145053 3242439 SERP2120 Staphylococcus epidermidis RP62A secretory antigen precursor SsaA-related protein YP_189676.1 2144622 D 176279 CDS YP_189677.1 57865560 3242440 complement(2145130..2146407) 1 NC_002976.3 identified by similarity to EGAD:9852; match to protein family HMM PF00368; match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative 2146407 3242440 SERP2121 Staphylococcus epidermidis RP62A hydroxymethylglutaryl-CoA reductase, degradative YP_189677.1 2145130 R 176279 CDS YP_189678.1 57865561 3242441 2146652..2147818 1 NC_002976.3 identified by match to protein family HMM PF01154; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 2147818 3242441 SERP2122 Staphylococcus epidermidis RP62A hydroxymethylglutaryl-CoA synthase YP_189678.1 2146652 D 176279 CDS YP_189679.1 57865562 3242442 complement(2148070..2148588) 1 NC_002976.3 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 2148588 ogt 3242442 ogt Staphylococcus epidermidis RP62A methylated-DNA--protein-cysteine methyltransferase YP_189679.1 2148070 R 176279 CDS YP_189680.1 57865563 3242443 complement(2148893..2149357) 1 NC_002976.3 hypothetical protein 2149357 3242443 SERP2124 Staphylococcus epidermidis RP62A hypothetical protein YP_189680.1 2148893 R 176279 CDS YP_189681.1 57865571 3241556 complement(2149540..2149722) 1 NC_002976.3 identified by similarity to GP:14248323; hypothetical protein 2149722 3241556 SERP2125 Staphylococcus epidermidis RP62A hypothetical protein YP_189681.1 2149540 R 176279 CDS YP_189682.1 57865572 3241557 complement(2149737..2151731) 1 NC_002976.3 identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2151731 feoB 3241557 feoB Staphylococcus epidermidis RP62A ferrous iron transport protein B YP_189682.1 2149737 R 176279 CDS YP_189683.1 57865573 3241558 complement(2151737..2151964) 1 NC_002976.3 identified by match to protein family HMM PF04023; FeoA family protein 2151964 3241558 SERP2127 Staphylococcus epidermidis RP62A FeoA family protein YP_189683.1 2151737 R 176279 CDS YP_189684.1 57865574 3241657 complement(2152253..2153797) 1 NC_002976.3 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase 2153797 3241657 SERP2128 Staphylococcus epidermidis RP62A 1-pyrroline-5-carboxylate dehydrogenase YP_189684.1 2152253 R 176279 CDS YP_189685.1 57865575 3241658 complement(2154300..2155169) 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase 2155169 3241658 SERP2129 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_189685.1 2154300 R 176279 CDS YP_189686.1 57865576 3241659 2155285..2155578 1 NC_002976.3 hypothetical protein 2155578 3241659 SERP2130 Staphylococcus epidermidis RP62A hypothetical protein YP_189686.1 2155285 D 176279 CDS YP_189687.1 57865577 3241660 2155815..2158199 1 NC_002976.3 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; cation transporter E1-E2 family ATPase 2158199 3241660 SERP2131 Staphylococcus epidermidis RP62A cation transporter E1-E2 family ATPase YP_189687.1 2155815 D 176279 CDS YP_189688.1 57865586 3241496 2158331..2158537 1 NC_002976.3 identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003; heavy metal-binding protein 2158537 3241496 SERP2132 Staphylococcus epidermidis RP62A heavy metal-binding protein YP_189688.1 2158331 D 176279 CDS YP_189689.1 57865587 3241497 complement(2158591..2159589) 1 NC_002976.3 catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2159589 3241497 SERP2133 Staphylococcus epidermidis RP62A D-lactate dehydrogenase YP_189689.1 2158591 R 176279 CDS YP_189690.1 57865588 3241498 complement(2159602..2160762) 1 NC_002976.3 identified by match to protein family HMM PF00155; aminotransferase, class I 2160762 3241498 SERP2134 Staphylococcus epidermidis RP62A aminotransferase, class I YP_189690.1 2159602 R 176279 CDS YP_189691.1 57865589 3241499 2160907..2161047 1 NC_002976.3 hypothetical protein 2161047 3241499 SERP2135 Staphylococcus epidermidis RP62A hypothetical protein YP_189691.1 2160907 D 176279 CDS YP_189692.1 57865590 3241500 complement(2161089..2161862) 1 NC_002976.3 identified by similarity to GP:8886398; match to protein family HMM PF05257; secretory antigen precursor SsaA 2161862 3241500 SERP2136 Staphylococcus epidermidis RP62A secretory antigen precursor SsaA YP_189692.1 2161089 R 176279 CDS YP_189693.1 57865591 3241501 complement(2162461..2164269) 1 NC_002976.3 identified by match to protein family HMM PF01757; hypothetical protein 2164269 3241501 SERP2137 Staphylococcus epidermidis RP62A hypothetical protein YP_189693.1 2162461 R 176279 CDS YP_189694.1 57865592 3241502 complement(2164774..2165481) 1 NC_002976.3 hypothetical protein 2165481 3241502 SERP2138 Staphylococcus epidermidis RP62A hypothetical protein YP_189694.1 2164774 R 176279 CDS YP_189695.1 57865593 3241542 complement(2166003..2166107) 1 NC_002976.3 hypothetical protein 2166107 3241542 SERP2139 Staphylococcus epidermidis RP62A hypothetical protein YP_189695.1 2166003 R 176279 CDS YP_189696.1 57865603 3243004 complement(2166137..2167561) 1 NC_002976.3 identified by match to protein family HMM PF03976; hypothetical protein 2167561 3243004 SERP2140 Staphylococcus epidermidis RP62A hypothetical protein YP_189696.1 2166137 R 176279 CDS YP_189697.1 57865604 3243005 complement(2167662..2168720) 1 NC_002976.3 regulatory protein 2168720 3243005 SERP2141 Staphylococcus epidermidis RP62A regulatory protein YP_189697.1 2167662 R 176279 CDS YP_189698.1 57865605 3243006 complement(2169022..2170401) 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 2170401 3243006 SERP2142 Staphylococcus epidermidis RP62A amino acid permease YP_189698.1 2169022 R 176279 CDS YP_189699.1 57865606 3243007 complement(2170608..2171465) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2473; match to protein family HMM PF03881; fructosamine kinase 2171465 3243007 SERP2143 Staphylococcus epidermidis RP62A fructosamine kinase YP_189699.1 2170608 R 176279 CDS YP_189700.1 57865607 3243008 2171689..2172753 1 NC_002976.3 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2172753 pyrD 3243008 pyrD Staphylococcus epidermidis RP62A dihydroorotate dehydrogenase 2 YP_189700.1 2171689 D 176279 CDS YP_189701.1 57865608 3243009 2172847..2173116 1 NC_002976.3 hypothetical protein 2173116 3243009 SERP2145 Staphylococcus epidermidis RP62A hypothetical protein YP_189701.1 2172847 D 176279 CDS YP_189702.1 57865609 3243010 complement(2173247..2173402) 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 2173402 3243010 SERP2146 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189702.1 2173247 R 176279 CDS YP_189703.1 57865610 3243011 complement(2173685..2174401) 1 NC_002976.3 identified by match to protein family HMM PF02677; hypothetical protein 2174401 3243011 SERP2147 Staphylococcus epidermidis RP62A hypothetical protein YP_189703.1 2173685 R 176279 CDS YP_189704.1 57865617 3242959 complement(2174678..2176009) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2241; hypothetical protein 2176009 3242959 SERP2148 Staphylococcus epidermidis RP62A hypothetical protein YP_189704.1 2174678 R 176279 CDS YP_189705.1 57865618 3242960 complement(2176013..2177023) 1 NC_002976.3 hypothetical protein 2177023 3242960 SERP2149 Staphylococcus epidermidis RP62A hypothetical protein YP_189705.1 2176013 R 176279 CDS YP_189706.1 57865619 3242223 complement(2177447..2177833) 1 NC_002976.3 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2177833 panD 3242223 panD Staphylococcus epidermidis RP62A aspartate alpha-decarboxylase YP_189706.1 2177447 R 176279 CDS YP_189707.1 57865620 3242224 complement(2177826..2178686) 1 NC_002976.3 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2178686 panC 3242224 panC Staphylococcus epidermidis RP62A pantoate--beta-alanine ligase YP_189707.1 2177826 R 176279 CDS YP_189708.1 57865621 3242225 complement(2178679..2179497) 1 NC_002976.3 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2179497 panB 3242225 panB Staphylococcus epidermidis RP62A 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_189708.1 2178679 R 176279 CDS YP_189709.1 57865622 3242226 2179573..2180442 1 NC_002976.3 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2180442 3242226 SERP2153 Staphylococcus epidermidis RP62A 2-dehydropantoate 2-reductase YP_189709.1 2179573 D 176279 CDS YP_189710.1 57865623 3242227 complement(2180841..2181545) 1 NC_002976.3 identified by similarity to EGAD:17067; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 2181545 budA 3242227 budA Staphylococcus epidermidis RP62A alpha-acetolactate decarboxylase YP_189710.1 2180841 R 176279 CDS YP_189711.1 57865631 3242511 complement(2181657..2183321) 1 NC_002976.3 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 2183321 budB 3242511 budB Staphylococcus epidermidis RP62A acetolactate synthase YP_189711.1 2181657 R 176279 CDS YP_189712.1 57865632 3242512 complement(2183384..2184334) 1 NC_002976.3 identified by similarity to SP:P13714; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 2184334 ldh 3242512 ldh Staphylococcus epidermidis RP62A L-lactate dehydrogenase YP_189712.1 2183384 R 176279 CDS YP_189713.1 57865633 3242535 complement(2185156..2186037) 1 NC_002976.3 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2186037 3242535 SERP2157 Staphylococcus epidermidis RP62A LysR family transcriptional regulator YP_189713.1 2185156 R 176279 CDS YP_189714.1 57865634 3242536 2186581..2188032 1 NC_002976.3 identified by match to protein family HMM PF00324; amino acid permease 2188032 3242536 SERP2158 Staphylococcus epidermidis RP62A amino acid permease YP_189714.1 2186581 D 176279 CDS YP_189715.1 57865635 3242537 complement(2188159..2189496) 1 NC_002976.3 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2189496 3242537 SERP2159 Staphylococcus epidermidis RP62A 4-aminobutyrate aminotransferase YP_189715.1 2188159 R 176279 CDS YP_189716.1 57865636 3242538 2189763..2190194 1 NC_002976.3 hypothetical protein 2190194 3242538 SERP2160 Staphylococcus epidermidis RP62A hypothetical protein YP_189716.1 2189763 D 176279 CDS YP_189717.1 57865637 3242539 complement(2190298..2191176) 1 NC_002976.3 lipoprotein 2191176 3242539 SERP2161 Staphylococcus epidermidis RP62A lipoprotein YP_189717.1 2190298 R 176279 CDS YP_189718.1 57865638 3242540 2191498..2192088 1 NC_002976.3 cell wall surface anchor family protein 2192088 3242540 SERP2162 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_189718.1 2191498 D 176279 CDS YP_189719.1 57865645 3242327 complement(2192083..2192271) 1 NC_002976.3 truncated IS1272 transposase 2192271 3242327 SERP2163 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189719.1 2192083 R 176279 CDS YP_189720.1 57865646 3242328 complement(2192579..2192725) 1 NC_002976.3 hypothetical protein 2192725 3242328 SERP2164 Staphylococcus epidermidis RP62A hypothetical protein YP_189720.1 2192579 R 176279 CDS YP_189721.1 57865647 3242329 2192892..2194253 1 NC_002976.3 identified by similarity to EGAD:7958; match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase 2194253 3242329 SERP2165 Staphylococcus epidermidis RP62A pyridine nucleotide-disulfide oxidoreductase YP_189721.1 2192892 D 176279 CDS YP_189722.1 57865506 3240908 2194558..2195448 1 NC_002976.3 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2195448 fdaB 3240908 fdaB Staphylococcus epidermidis RP62A fructose-1,6-bisphosphate aldolase YP_189722.1 2194558 D 176279 CDS YP_189723.1 57865507 3240909 complement(2195581..2196504) 1 NC_002976.3 lipoprotein 2196504 3240909 SERP2167 Staphylococcus epidermidis RP62A lipoprotein YP_189723.1 2195581 R 176279 CDS YP_189724.1 57865508 3240910 complement(2196899..2198398) 1 NC_002976.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2198398 mqo-2 3240910 mqo-2 Staphylococcus epidermidis RP62A malate:quinone oxidoreductase YP_189724.1 2196899 R 176279 CDS YP_189725.1 57865516 3242452 complement(2198607..2199425) 1 NC_002976.3 identified by similarity to OMNI:NTL01BH1376; match to protein family HMM PF03618; hypothetical protein 2199425 3242452 SERP2169 Staphylococcus epidermidis RP62A hypothetical protein YP_189725.1 2198607 R 176279 CDS YP_189726.1 57865517 3242453 complement(2199427..2202054) 1 NC_002976.3 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 2202054 ppdK 3242453 ppdK Staphylococcus epidermidis RP62A pyruvate phosphate dikinase YP_189726.1 2199427 R 176279 CDS YP_189727.1 57865518 3242363 complement(2202180..2202272) 1 NC_002976.3 hypothetical protein 2202272 3242363 SERP2171 Staphylococcus epidermidis RP62A hypothetical protein YP_189727.1 2202180 R 176279 CDS YP_189728.1 57865519 3242364 complement(2202403..2203998) 1 NC_002976.3 identified by similarity to EGAD:18603; match to protein family HMM PF00501; acetyl-CoA synthetase 2203998 3242364 SERP2172 Staphylococcus epidermidis RP62A acetyl-CoA synthetase YP_189728.1 2202403 R 176279 CDS YP_189729.1 57865520 3242365 complement(2204338..2204784) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2502; match to protein family HMM PF03992; hypothetical protein 2204784 3242365 SERP2173 Staphylococcus epidermidis RP62A hypothetical protein YP_189729.1 2204338 R 176279 CDS YP_189730.1 57865521 3242366 complement(2204812..2205030) 1 NC_002976.3 identified by similarity to OMNI:SA2626; hypothetical protein 2205030 3242366 SERP2174 Staphylococcus epidermidis RP62A hypothetical protein YP_189730.1 2204812 R 176279 CDS YP_189731.1 57865522 3242367 complement(2205477..2206652) 1 NC_002976.3 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 2206652 3242367 SERP2175 Staphylococcus epidermidis RP62A amidohydrolase YP_189731.1 2205477 R 176279 CDS YP_189732.1 57865523 3242368 complement(2206974..2208692) 1 NC_002976.3 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2208692 betA 3242368 betA Staphylococcus epidermidis RP62A choline dehydrogenase YP_189732.1 2206974 R 176279 CDS YP_189733.1 57865534 3240757 complement(2208852..2210342) 1 NC_002976.3 identified by similarity to EGAD:97843; match to protein family HMM PF00171; match to protein family HMM TIGR01804; betaine aldehyde dehydrogenase 2210342 betB 3240757 betB Staphylococcus epidermidis RP62A betaine aldehyde dehydrogenase YP_189733.1 2208852 R 176279 CDS YP_189734.1 57865535 3240758 2210814..2211377 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2506; hypothetical protein 2211377 3240758 SERP2178 Staphylococcus epidermidis RP62A hypothetical protein YP_189734.1 2210814 D 176279 CDS YP_189735.2 161486707 3240759 complement(2211424..2213046) 1 NC_002976.3 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 2213046 3240759 SERP2179 Staphylococcus epidermidis RP62A choline/carnitine/betaine transporter YP_189735.2 2211424 R 176279 CDS YP_189736.1 57865537 3240760 complement(2213467..2214765) 1 NC_002976.3 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 2214765 3240760 SERP2180 Staphylococcus epidermidis RP62A anaerobic C4-dicarboxylate transporter YP_189736.1 2213467 R 176279 CDS YP_189737.1 57865538 3240761 complement(2214989..2215114) 1 NC_002976.3 hypothetical protein 2215114 3240761 SERP2181 Staphylococcus epidermidis RP62A hypothetical protein YP_189737.1 2214989 R 176279 CDS YP_189738.1 57865539 3240762 complement(2215128..2215664) 1 NC_002976.3 identified by match to protein family HMM PF02143; anaerobic ribonucleoside-triphosphate reductase activating protein 2215664 nrdG 3240762 nrdG Staphylococcus epidermidis RP62A anaerobic ribonucleoside-triphosphate reductase activating protein YP_189738.1 2215128 R 176279 CDS YP_189739.1 57865540 3240763 complement(2215661..2217511) 1 NC_002976.3 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2217511 nrdD 3240763 nrdD Staphylococcus epidermidis RP62A anaerobic ribonucleoside triphosphate reductase YP_189739.1 2215661 R 176279 CDS YP_189740.1 57865549 3242487 complement(2217830..2218135) 1 NC_002976.3 hypothetical protein 2218135 3242487 SERP2184 Staphylococcus epidermidis RP62A hypothetical protein YP_189740.1 2217830 R 176279 CDS YP_189741.1 57865550 3242411 complement(2218459..2219058) 1 NC_002976.3 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 2219058 cysC 3242411 cysC Staphylococcus epidermidis RP62A adenylylsulfate kinase YP_189741.1 2218459 R 176279 CDS YP_189742.1 57865551 3242412 complement(2219074..2220252) 1 NC_002976.3 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 2220252 sat 3242412 sat Staphylococcus epidermidis RP62A sulfate adenylyltransferase YP_189742.1 2219074 R 176279 CDS YP_189743.1 57865552 3242413 complement(2220276..2221175) 1 NC_002976.3 identified by similarity to EGAD:108052; match to protein family HMM PF01925; hypothetical protein 2221175 3242413 SERP2187 Staphylococcus epidermidis RP62A hypothetical protein YP_189743.1 2220276 R 176279 CDS YP_189744.1 57865553 3242414 complement(2221197..2221808) 1 NC_002976.3 catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 2221808 3242414 SERP2188 Staphylococcus epidermidis RP62A precorrin-2 dehydrogenase YP_189744.1 2221197 R 176279 CDS YP_189745.1 57865554 3242415 complement(2221883..2222662) 1 NC_002976.3 identified by similarity to EGAD:15084; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase 2222662 3242415 SERP2189 Staphylococcus epidermidis RP62A uroporphyrin-III C-methyltransferase YP_189745.1 2221883 R 176279 CDS YP_189746.1 57865555 3240571 complement(2222684..2224402) 1 NC_002976.3 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 2224402 cysI 3240571 cysI Staphylococcus epidermidis RP62A sulfite reductase subunit beta YP_189746.1 2222684 R 176279 CDS YP_189747.1 57865556 3240572 complement(2224422..2226266) 1 NC_002976.3 identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; sulfite reductase (NADPH) flavoprotein alpha-component 2226266 cysJ 3240572 cysJ Staphylococcus epidermidis RP62A sulfite reductase (NADPH) flavoprotein alpha-component YP_189747.1 2224422 R 176279 CDS YP_189748.1 57865564 3242444 complement(2226564..2227295) 1 NC_002976.3 identified by similarity to EGAD:108231; match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosophoadenylyl-sulfate reductase 2227295 cysH 3242444 cysH Staphylococcus epidermidis RP62A phosophoadenylyl-sulfate reductase YP_189748.1 2226564 R 176279 CDS YP_189749.1 57865565 3242445 2227498..2227617 1 NC_002976.3 hypothetical protein 2227617 3242445 SERP2193 Staphylococcus epidermidis RP62A hypothetical protein YP_189749.1 2227498 D 176279 CDS YP_189750.1 57865566 3241551 complement(2227609..2228085) 1 NC_002976.3 identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase 2228085 gpxA-2 3241551 gpxA-2 Staphylococcus epidermidis RP62A glutathione peroxidase YP_189750.1 2227609 R 176279 CDS YP_189751.1 57865567 3241552 complement(2228098..2229441) 1 NC_002976.3 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase 2229441 3241552 SERP2195 Staphylococcus epidermidis RP62A alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase YP_189751.1 2228098 R 176279 CDS YP_189752.1 57865568 3241553 complement(2229458..2229898) 1 NC_002976.3 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2229898 3241553 SERP2196 Staphylococcus epidermidis RP62A MarR family transcriptional regulator YP_189752.1 2229458 R 176279 CDS YP_189753.1 57865569 3241554 complement(2230118..2230867) 1 NC_002976.3 hypothetical protein 2230867 3241554 SERP2197 Staphylococcus epidermidis RP62A hypothetical protein YP_189753.1 2230118 R 176279 CDS YP_189754.1 57865570 3241555 complement(2230873..2232129) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0238; hypothetical protein 2232129 3241555 SERP2198 Staphylococcus epidermidis RP62A hypothetical protein YP_189754.1 2230873 R 176279 CDS YP_189755.1 57865578 3241661 complement(2232343..2233452) 1 NC_002976.3 hypothetical protein 2233452 3241661 SERP2199 Staphylococcus epidermidis RP62A hypothetical protein YP_189755.1 2232343 R 176279 CDS YP_189756.1 57865579 3241662 complement(2233912..2234016) 1 NC_002976.3 hypothetical protein 2234016 3241662 SERP2200 Staphylococcus epidermidis RP62A hypothetical protein YP_189756.1 2233912 R 176279 CDS YP_189757.1 57865580 3241663 complement(2234763..2236355) 1 NC_002976.3 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 2236355 3241663 SERP2201 Staphylococcus epidermidis RP62A symporter YidK YP_189757.1 2234763 R 176279 CDS YP_189758.1 57865581 3241664 complement(2236877..2237467) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0989; hypothetical protein 2237467 3241664 SERP2202 Staphylococcus epidermidis RP62A hypothetical protein YP_189758.1 2236877 R 176279 CDS YP_189759.1 57865582 3241665 complement(2237571..2239583) 1 NC_002976.3 identified by match to protein family HMM PF02687; ABC transporter permease 2239583 3241665 SERP2203 Staphylococcus epidermidis RP62A ABC transporter permease YP_189759.1 2237571 R 176279 CDS YP_189760.1 57865583 3241493 complement(2239585..2240334) 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2240334 3241493 SERP2204 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189760.1 2239585 R 176279 CDS YP_189761.1 57865584 3241494 complement(2240445..2241350) 1 NC_002976.3 identified by match to protein family HMM PF02518; sensor histidine kinase 2241350 3241494 SERP2205 Staphylococcus epidermidis RP62A sensor histidine kinase YP_189761.1 2240445 R 176279 CDS YP_189762.1 57865585 3241495 complement(2241347..2242012) 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2242012 3241495 SERP2206 Staphylococcus epidermidis RP62A DNA-binding response regulator YP_189762.1 2241347 R 176279 CDS YP_189763.1 57865594 3241543 complement(2242043..2242222) 1 NC_002976.3 hypothetical protein 2242222 3241543 SERP2207 Staphylococcus epidermidis RP62A hypothetical protein YP_189763.1 2242043 R 176279 CDS YP_189764.1 57865595 3241544 2242520..2243989 1 NC_002976.3 identified by match to protein family HMM PF00245; alkaline phosphatase 2243989 3241544 SERP2208 Staphylococcus epidermidis RP62A alkaline phosphatase YP_189764.1 2242520 D 176279 CDS YP_189765.1 57865596 3241545 complement(2244112..2245656) 1 NC_002976.3 hypothetical protein 2245656 3241545 SERP2209 Staphylococcus epidermidis RP62A hypothetical protein YP_189765.1 2244112 R 176279 CDS YP_189766.1 57865597 3241546 complement(2245847..2248180) 1 NC_002976.3 identified by match to protein family HMM PF04464; glycosyl transferase, group 1 family protein 2248180 3241546 SERP2210 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_189766.1 2245847 R 176279 CDS YP_189767.1 57865598 3241547 complement(2248378..2248479) 1 NC_002976.3 identified by similarity to OMNI:SA2649; hypothetical protein 2248479 3241547 SERP2211 Staphylococcus epidermidis RP62A hypothetical protein YP_189767.1 2248378 R 176279 CDS YP_189768.1 57865599 3241548 complement(2248885..2250222) 1 NC_002976.3 identified by similarity to EGAD:108772; hypothetical protein 2250222 3241548 SERP2212 Staphylococcus epidermidis RP62A hypothetical protein YP_189768.1 2248885 R 176279 CDS YP_189769.1 57865600 3241549 2251501..2251632 1 NC_002976.3 hypothetical protein 2251632 3241549 SERP2213 Staphylococcus epidermidis RP62A hypothetical protein YP_189769.1 2251501 D 176279 CDS YP_189770.1 57865601 3241550 2251642..2251923 1 NC_002976.3 hypothetical protein 2251923 3241550 SERP2214 Staphylococcus epidermidis RP62A hypothetical protein YP_189770.1 2251642 D 176279 CDS YP_189771.1 57865602 3243003 2252357..2252542 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2594; hypothetical protein 2252542 3243003 SERP2215 Staphylococcus epidermidis RP62A hypothetical protein YP_189771.1 2252357 D 176279 CDS YP_189772.1 57865611 3242952 complement(2252735..2253673) 1 NC_002976.3 identified by match to protein family HMM PF00294; ribokinase 2253673 3242952 SERP2216 Staphylococcus epidermidis RP62A ribokinase YP_189772.1 2252735 R 176279 CDS YP_189773.1 57865612 3242953 complement(2253837..2255003) 1 NC_002976.3 identified by match to protein family HMM PF02133; cytosine/purines, uracil, thiamine, allantoin permease family protein 2255003 3242953 SERP2217 Staphylococcus epidermidis RP62A cytosine/purines, uracil, thiamine, allantoin permease family protein YP_189773.1 2253837 R 176279 CDS YP_189774.1 57865613 3242954 complement(2255022..2256008) 1 NC_002976.3 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 2256008 3242954 SERP2218 Staphylococcus epidermidis RP62A ADP-ribosylglycohydrolase YP_189774.1 2255022 R 176279 CDS YP_189775.1 57865614 3242956 2257002..2257433 1 NC_002976.3 identified by match to protein family HMM PF00582; universal stress protein 2257433 3242956 SERP2220 Staphylococcus epidermidis RP62A universal stress protein YP_189775.1 2257002 D 176279 CDS YP_189776.1 57865615 3242957 2257793..2258410 1 NC_002976.3 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779; cadmium resistance family protein 2258410 3242957 SERP2221 Staphylococcus epidermidis RP62A cadmium resistance family protein YP_189776.1 2257793 D 176279 CDS YP_189777.1 57865616 3242958 2258429..2258776 1 NC_002976.3 identified by similarity to EGAD:7403; match to protein family HMM PF01022; CadC family transcriptional regulator 2258776 cadC 3242958 cadC Staphylococcus epidermidis RP62A CadC family transcriptional regulator YP_189777.1 2258429 D 176279 CDS YP_189778.1 57865624 3242228 complement(2259315..2259416) 1 NC_002976.3 hypothetical protein 2259416 3242228 SERP2223 Staphylococcus epidermidis RP62A hypothetical protein YP_189778.1 2259315 R 176279 CDS YP_189779.1 57865625 3242229 complement(2259614..2259763) 1 NC_002976.3 metallothionein 2-related protein 2259763 3242229 SERP2224 Staphylococcus epidermidis RP62A metallothionein 2-related protein YP_189779.1 2259614 R 176279 CDS YP_189780.1 57865626 3242230 complement(2259780..2260124) 1 NC_002976.3 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2260124 3242230 SERP2225 Staphylococcus epidermidis RP62A ArsR family transcriptional regulator YP_189780.1 2259780 R 176279 CDS YP_189781.1 57865627 3242505 2260478..2260606 1 NC_002976.3 hypothetical protein 2260606 3242505 SERP2226 Staphylococcus epidermidis RP62A hypothetical protein YP_189781.1 2260478 D 176279 CDS YP_189782.1 57865628 3242506 complement(2260680..2260847) 1 NC_002976.3 hypothetical protein 2260847 3242506 SERP2227 Staphylococcus epidermidis RP62A hypothetical protein YP_189782.1 2260680 R 176279 CDS YP_189783.1 57865629 3242507 complement(2260878..2261120) 1 NC_002976.3 identified by similarity to EGAD:164435; hypothetical protein 2261120 3242507 SERP2228 Staphylococcus epidermidis RP62A hypothetical protein YP_189783.1 2260878 R 176279 CDS YP_189784.1 57865630 3242509 2261856..2262131 1 NC_002976.3 hypothetical protein 2262131 3242509 SERP2230 Staphylococcus epidermidis RP62A hypothetical protein YP_189784.1 2261856 D 176279 CDS YP_189785.1 57865639 3242541 complement(2262635..2263774) 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator superfamily protein 2263774 3242541 SERP2232 Staphylococcus epidermidis RP62A major facilitator superfamily protein YP_189785.1 2262635 R 176279 CDS YP_189786.1 57865640 3242542 2263927..2264748 1 NC_002976.3 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 2264748 3242542 SERP2233 Staphylococcus epidermidis RP62A LysR family transcriptional regulator YP_189786.1 2263927 D 176279 CDS YP_189787.1 57865641 3242543 2265275..2266006 1 NC_002976.3 hypothetical protein 2266006 3242543 SERP2234 Staphylococcus epidermidis RP62A hypothetical protein YP_189787.1 2265275 D 176279 CDS YP_189788.1 57865642 3242322 2266163..2266258 1 NC_002976.3 identified by similarity to GP:14020893; hypothetical protein 2266258 3242322 SERP2235 Staphylococcus epidermidis RP62A hypothetical protein YP_189788.1 2266163 D 176279 CDS YP_189789.1 57865643 3242323 2266411..2267010 1 NC_002976.3 hypothetical protein 2267010 3242323 SERP2236 Staphylococcus epidermidis RP62A hypothetical protein YP_189789.1 2266411 D 176279 CDS YP_189790.1 57865644 3242325 complement(2267485..2267580) 1 NC_002976.3 hypothetical protein 2267580 3242325 SERP2238 Staphylococcus epidermidis RP62A hypothetical protein YP_189790.1 2267485 R 176279 CDS YP_189791.1 57865653 3242687 complement(2268146..2268628) 1 NC_002976.3 identified by similarity to EGAD:37318; match to protein family HMM PF01797; IS200 family transposase 2268628 3242687 SERP2240 Staphylococcus epidermidis RP62A IS200 family transposase YP_189791.1 2268146 R 176279 CDS YP_189792.1 57865654 3242688 complement(2268844..2269290) 1 NC_002976.3 transcriptional regulator 2269290 3242688 SERP2241 Staphylococcus epidermidis RP62A transcriptional regulator YP_189792.1 2268844 R 176279 CDS YP_189793.1 57865655 3242689 2269462..2271111 1 NC_002976.3 identified by similarity to EGAD:20234; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 2271111 ipdC 3242689 ipdC Staphylococcus epidermidis RP62A indole-3-pyruvate decarboxylase YP_189793.1 2269462 D 176279 CDS YP_189794.1 57865656 3242690 complement(2271304..2271429) 1 NC_002976.3 hypothetical protein 2271429 3242690 SERP2243 Staphylococcus epidermidis RP62A hypothetical protein YP_189794.1 2271304 R 176279 CDS YP_189795.1 57865657 3242691 complement(2271458..2272624) 1 NC_002976.3 capA-related protein 2272624 3242691 SERP2244 Staphylococcus epidermidis RP62A capA-related protein YP_189795.1 2271458 R 176279 CDS YP_189796.1 57865658 3240477 complement(2272878..2273636) 1 NC_002976.3 identified by similarity to GP:7453518; match to protein family HMM PF00756; tributyrin esterase EstA 2273636 3240477 SERP2245 Staphylococcus epidermidis RP62A tributyrin esterase EstA YP_189796.1 2272878 R 176279 CDS YP_189797.1 57865659 3240478 complement(2273928..2274614) 1 NC_002976.3 Crp/Fnr family transcriptional regulator 2274614 3240478 SERP2246 Staphylococcus epidermidis RP62A Crp/Fnr family transcriptional regulator YP_189797.1 2273928 R 176279 CDS YP_189798.1 57865660 3240479 complement(2274833..2276236) 1 NC_002976.3 identified by similarity to EGAD:21315; match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter 2276236 arcD 3240479 arcD Staphylococcus epidermidis RP62A arginine/ornithine antiporter YP_189798.1 2274833 R 176279 CDS YP_189799.1 57865668 3242553 2276328..2276468 1 NC_002976.3 hypothetical protein 2276468 3242553 SERP2248 Staphylococcus epidermidis RP62A hypothetical protein YP_189799.1 2276328 D 176279 CDS YP_189800.1 57865669 3242554 complement(2276501..2277508) 1 NC_002976.3 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 2277508 arcB-1 3242554 arcB-1 Staphylococcus epidermidis RP62A ornithine carbamoyltransferase YP_189800.1 2276501 R 176279 CDS YP_189801.1 57865648 3242330 complement(2277613..2278848) 1 NC_002976.3 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 2278848 arcA 3242330 arcA Staphylococcus epidermidis RP62A arginine deiminase YP_189801.1 2277613 R 176279 CDS YP_189802.1 57865649 3242683 complement(2279187..2279648) 1 NC_002976.3 identified by similarity to EGAD:124606; match to protein family HMM PF02863; ArgR family transcriptional regulator 2279648 3242683 SERP2251 Staphylococcus epidermidis RP62A ArgR family transcriptional regulator YP_189802.1 2279187 R 176279 CDS YP_189803.1 57865650 3242684 complement(2280162..2281685) 1 NC_002976.3 identified by similarity to EGAD:16884; match to protein family HMM PF01447; match to protein family HMM PF02868; extracellular elastase precursor 2281685 sepA 3242684 sepA Staphylococcus epidermidis RP62A extracellular elastase precursor YP_189803.1 2280162 R 176279 CDS YP_189804.1 57865651 3242685 complement(2282118..2283362) 1 NC_002976.3 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2283362 3242685 SERP2253 Staphylococcus epidermidis RP62A succinyl-diaminopimelate desuccinylase YP_189804.1 2282118 R 176279 CDS YP_189805.1 57865652 3242686 2283725..2284201 1 NC_002976.3 identified by similarity to PIR:G90071; hypothetical protein 2284201 3242686 SERP2254 Staphylococcus epidermidis RP62A hypothetical protein YP_189805.1 2283725 D 176279 CDS YP_189806.1 57865661 3240480 2284405..2285319 1 NC_002976.3 identified by similarity to OMNI:NTL01SA1369; hypothetical protein 2285319 3240480 SERP2255 Staphylococcus epidermidis RP62A hypothetical protein YP_189806.1 2284405 D 176279 CDS YP_189807.1 57865662 3240481 2285300..2285470 1 NC_002976.3 hypothetical protein 2285470 3240481 SERP2256 Staphylococcus epidermidis RP62A hypothetical protein YP_189807.1 2285300 D 176279 CDS YP_189808.1 57865663 3240482 complement(2285934..2286722) 1 NC_002976.3 identified by similarity to GP:5777659; match to protein family HMM PF00106; match to protein family HMM PF00678; acetoin reductase 2286722 3240482 SERP2257 Staphylococcus epidermidis RP62A acetoin reductase YP_189808.1 2285934 R 176279 CDS YP_189809.1 57865664 3240483 2287012..2287146 1 NC_002976.3 identified by similarity to GP:1778753; hemolysin 2287146 3240483 SERP2258 Staphylococcus epidermidis RP62A hemolysin YP_189809.1 2287012 D 176279 CDS YP_189810.1 57865665 3240484 2287464..2289335 1 NC_002976.3 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 2289335 3240484 SERP2259 Staphylococcus epidermidis RP62A BglG family transcriptional antiterminator YP_189810.1 2287464 D 176279 CDS YP_189811.1 57865666 3240485 2289420..2291360 1 NC_002976.3 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose-specific IIABC components 2291360 3240485 SERP2260 Staphylococcus epidermidis RP62A PTS system, fructose-specific IIABC components YP_189811.1 2289420 D 176279 CDS YP_189812.1 57865667 3242552 2291376..2292326 1 NC_002976.3 identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2292326 manA-2 3242552 manA-2 Staphylococcus epidermidis RP62A mannose-6-phosphate isomerase YP_189812.1 2291376 D 176279 CDS YP_189813.1 57865677 3242094 complement(2292637..2295501) 1 NC_002976.3 identified by similarity to SP:P49022; phage infection protein 2295501 3242094 SERP2262 Staphylococcus epidermidis RP62A phage infection protein YP_189813.1 2292637 R 176279 CDS YP_189814.1 57865678 3242095 2295783..2297750 1 NC_002976.3 identified by match to protein family HMM PF01832; match to protein family HMM PF05257; N-acetylmuramoyl-L-alanine amidase 2297750 3242095 SERP2263 Staphylococcus epidermidis RP62A N-acetylmuramoyl-L-alanine amidase YP_189814.1 2295783 D 176279 CDS YP_189815.1 57865679 3242096 complement(2298118..2300148) 1 NC_002976.3 cell wall surface anchor family protein 2300148 3242096 SERP2264 Staphylococcus epidermidis RP62A cell wall surface anchor family protein YP_189815.1 2298118 R 176279 CDS YP_189816.1 57865680 3242097 2300398..2300826 1 NC_002976.3 identified by similarity to SP:O68390; match to protein family HMM PF02566; organic hydroperoxide resistance protein 2300826 3242097 SERP2265 Staphylococcus epidermidis RP62A organic hydroperoxide resistance protein YP_189816.1 2300398 D 176279 CDS YP_189817.1 57865681 3242098 complement(2300851..2301039) 1 NC_002976.3 hypothetical protein 2301039 3242098 SERP2266 Staphylococcus epidermidis RP62A hypothetical protein YP_189817.1 2300851 R 176279 CDS YP_189818.1 57865682 3242099 2301140..2301316 1 NC_002976.3 hypothetical protein 2301316 3242099 SERP2267 Staphylococcus epidermidis RP62A hypothetical protein YP_189818.1 2301140 D 176279 CDS YP_189819.1 57865683 3242100 complement(2301515..2301670) 1 NC_002976.3 identified by similarity to GP:8918792; truncated IS1272 transposase 2301670 3242100 SERP2268 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189819.1 2301515 R 176279 CDS YP_189820.1 57865684 3242101 complement(2302067..2302756) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2547; hypothetical protein 2302756 3242101 SERP2269 Staphylococcus epidermidis RP62A hypothetical protein YP_189820.1 2302067 R 176279 CDS YP_189821.1 57865693 3242299 complement(2302918..2304090) 1 NC_002976.3 identified by match to protein family HMM PF00083; major facilitator superfamily protein 2304090 3242299 SERP2270 Staphylococcus epidermidis RP62A major facilitator superfamily protein YP_189821.1 2302918 R 176279 CDS YP_189822.1 57865694 3242300 2304431..2304787 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2550; hypothetical protein 2304787 3242300 SERP2271 Staphylococcus epidermidis RP62A hypothetical protein YP_189822.1 2304431 D 176279 CDS YP_189823.1 57865695 3241016 complement(2304937..2305416) 1 NC_002976.3 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A 2305416 3241016 SERP2272 Staphylococcus epidermidis RP62A methionine sulfoxide reductase A YP_189823.1 2304937 R 176279 CDS YP_189824.1 57865696 3241017 complement(2305586..2305933) 1 NC_002976.3 identified by similarity to EGAD:107653; hypothetical protein 2305933 3241017 SERP2273 Staphylococcus epidermidis RP62A hypothetical protein YP_189824.1 2305586 R 176279 CDS YP_189825.1 57865697 3241018 complement(2306039..2307379) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2539; hypothetical protein 2307379 3241018 SERP2274 Staphylococcus epidermidis RP62A hypothetical protein YP_189825.1 2306039 R 176279 CDS YP_189826.1 57865698 3241019 complement(2307372..2308880) 1 NC_002976.3 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 2308880 3241019 SERP2275 Staphylococcus epidermidis RP62A glycosyl transferase, group 1 family protein YP_189826.1 2307372 R 176279 CDS YP_189827.1 57865699 3241020 complement(2308898..2311288) 1 NC_002976.3 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 2311288 3241020 SERP2276 Staphylococcus epidermidis RP62A preprotein translocase subunit SecA YP_189827.1 2308898 R 176279 CDS YP_189828.1 57865707 3240876 complement(2311840..2313408) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2543; hypothetical protein 2313408 3240876 SERP2278 Staphylococcus epidermidis RP62A hypothetical protein YP_189828.1 2311840 R 176279 CDS YP_189829.1 57865708 3240877 complement(2313389..2314945) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2544; hypothetical protein 2314945 3240877 SERP2279 Staphylococcus epidermidis RP62A hypothetical protein YP_189829.1 2313389 R 176279 CDS YP_189830.1 57865709 3240878 complement(2314963..2316162) 1 NC_002976.3 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2316162 secY 3240878 secY Staphylococcus epidermidis RP62A preprotein translocase subunit SecY YP_189830.1 2314963 R 176279 CDS YP_189831.1 57865710 3241091 complement(2316305..2321917) 1 NC_002976.3 identified by match to protein family HMM PF05345; serine threonine rich antigen 2321917 3241091 SERP2281 Staphylococcus epidermidis RP62A serine threonine rich antigen YP_189831.1 2316305 R 176279 CDS YP_189832.1 57865711 3241092 complement(2322337..2323638) 1 NC_002976.3 hypothetical protein 2323638 3241092 SERP2282 Staphylococcus epidermidis RP62A hypothetical protein YP_189832.1 2322337 R 176279 CDS YP_189833.1 57865712 3241093 complement(2323914..2324729) 1 NC_002976.3 identified by match to protein family HMM PF00528; phosphonate ABC transporter permease 2324729 3241093 SERP2283 Staphylococcus epidermidis RP62A phosphonate ABC transporter permease YP_189833.1 2323914 R 176279 CDS YP_189834.1 57865713 3241094 complement(2324726..2325526) 1 NC_002976.3 identified by match to protein family HMM PF00528; phosphonate ABC transporter permease 2325526 3241094 SERP2284 Staphylococcus epidermidis RP62A phosphonate ABC transporter permease YP_189834.1 2324726 R 176279 CDS YP_189835.1 57865714 3241095 complement(2325528..2326301) 1 NC_002976.3 identified by match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein 2326301 3241095 SERP2285 Staphylococcus epidermidis RP62A phosphonate ABC transporter ATP-binding protein YP_189835.1 2325528 R 176279 CDS YP_189836.1 57865722 3241773 complement(2326415..2327371) 1 NC_002976.3 phosphonate ABC transporter substrate-binding protein 2327371 3241773 SERP2286 Staphylococcus epidermidis RP62A phosphonate ABC transporter substrate-binding protein YP_189836.1 2326415 R 176279 CDS YP_189837.1 57865723 3241774 2327606..2329156 1 NC_002976.3 hypothetical protein 2329156 3241774 SERP2287 Staphylococcus epidermidis RP62A hypothetical protein YP_189837.1 2327606 D 176279 CDS YP_189838.1 57865724 3241775 2329253..2330788 1 NC_002976.3 identified by match to protein family HMM PF00149; match to protein family HMM PF01009; match to protein family HMM PF02872; 5'-nucleotidase 2330788 3241775 SERP2288 Staphylococcus epidermidis RP62A 5'-nucleotidase YP_189838.1 2329253 D 176279 CDS YP_189839.1 57865725 3241776 complement(2330888..2332063) 1 NC_002976.3 transporter 2332063 3241776 SERP2289 Staphylococcus epidermidis RP62A transporter YP_189839.1 2330888 R 176279 CDS YP_189840.1 57865726 3241777 2332514..2332627 1 NC_002976.3 hypothetical protein 2332627 3241777 SERP2290 Staphylococcus epidermidis RP62A hypothetical protein YP_189840.1 2332514 D 176279 CDS YP_189841.1 57865727 3241778 2333271..2333378 1 NC_002976.3 hypothetical protein 2333378 3241778 SERP2291 Staphylococcus epidermidis RP62A hypothetical protein YP_189841.1 2333271 D 176279 CDS YP_189842.1 57865728 3241779 complement(2333498..2334055) 1 NC_002976.3 identified by similarity to OMNI:SA2688; match to protein family HMM PF00440; intercellular adhesion regulator 2334055 icaR 3241779 icaR Staphylococcus epidermidis RP62A intercellular adhesion regulator YP_189842.1 2333498 R 176279 CDS YP_189843.1 57865729 3240428 2334220..2335458 1 NC_002976.3 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2335458 icaA 3240428 icaA Staphylococcus epidermidis RP62A N-glycosyltransferase YP_189843.1 2334220 D 176279 CDS YP_189844.1 57865737 3240436 2335422..2335727 1 NC_002976.3 identified by similarity to GP:2914128; intercellular adhesion protein D 2335727 icaD 3240436 icaD Staphylococcus epidermidis RP62A intercellular adhesion protein D YP_189844.1 2335422 D 176279 CDS YP_189845.1 57865738 3242231 2335724..2336593 1 NC_002976.3 identified by match to protein family HMM PF01522; intercellular adhesion protein B 2336593 icaB 3242231 icaB Staphylococcus epidermidis RP62A intercellular adhesion protein B YP_189845.1 2335724 D 176279 CDS YP_189846.1 57865739 3242232 2336580..2337647 1 NC_002976.3 identified by match to protein family HMM PF01757; intercellular adhesion protein C 2337647 icaC 3242232 icaC Staphylococcus epidermidis RP62A intercellular adhesion protein C YP_189846.1 2336580 D 176279 CDS YP_189847.1 57865740 3242233 complement(2337843..2339909) 1 NC_002976.3 identified by similarity to GP:2981225; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase 2339909 geh-1 3242233 geh-1 Staphylococcus epidermidis RP62A lipase YP_189847.1 2337843 R 176279 CDS YP_189848.1 57865741 3242234 2339963..2340103 1 NC_002976.3 hypothetical protein 2340103 3242234 SERP2298 Staphylococcus epidermidis RP62A hypothetical protein YP_189848.1 2339963 D 176279 CDS YP_189849.1 57865742 3242235 2340315..2341100 1 NC_002976.3 identified by match to protein family HMM PF00797; N-acetyltransferase 2341100 3242235 SERP2299 Staphylococcus epidermidis RP62A N-acetyltransferase YP_189849.1 2340315 D 176279 CDS YP_189850.1 57865743 3242236 complement(2341209..2341844) 1 NC_002976.3 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2341844 hisIE 3242236 hisIE Staphylococcus epidermidis RP62A bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_189850.1 2341209 R 176279 CDS YP_189851.1 57865752 3242475 complement(2341841..2342599) 1 NC_002976.3 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2342599 hisF 3242475 hisF Staphylococcus epidermidis RP62A imidazole glycerol phosphate synthase subunit HisF YP_189851.1 2341841 R 176279 CDS YP_189852.1 57865753 3242476 complement(2342596..2343300) 1 NC_002976.3 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2343300 hisA 3242476 hisA Staphylococcus epidermidis RP62A 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_189852.1 2342596 R 176279 CDS YP_189853.1 57865754 3242477 complement(2343293..2343871) 1 NC_002976.3 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2343871 hisH 3242477 hisH Staphylococcus epidermidis RP62A imidazole glycerol phosphate synthase subunit HisH YP_189853.1 2343293 R 176279 CDS YP_189854.1 57865755 3242478 complement(2343868..2344446) 1 NC_002976.3 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2344446 hisB 3242478 hisB Staphylococcus epidermidis RP62A imidazoleglycerol-phosphate dehydratase YP_189854.1 2343868 R 176279 CDS YP_189855.1 57865756 3240932 complement(2344562..2345806) 1 NC_002976.3 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2345806 hisD 3240932 hisD Staphylococcus epidermidis RP62A histidinol dehydrogenase YP_189855.1 2344562 R 176279 CDS YP_189856.1 57865757 3240933 complement(2345799..2346413) 1 NC_002976.3 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 2346413 hisG 3240933 hisG Staphylococcus epidermidis RP62A ATP phosphoribosyltransferase YP_189856.1 2345799 R 176279 CDS YP_189857.1 57865758 3240934 complement(2346438..2347250) 1 NC_002976.3 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 2347250 hisZ 3240934 hisZ Staphylococcus epidermidis RP62A ATP phosphoribosyltransferase YP_189857.1 2346438 R 176279 CDS YP_189858.1 57865766 3242934 complement(2347487..2347903) 1 NC_002976.3 identified by similarity to OMNI:NTL01BH0425; hypothetical protein 2347903 3242934 SERP2308 Staphylococcus epidermidis RP62A hypothetical protein YP_189858.1 2347487 R 176279 CDS YP_189859.1 57865767 3242935 2348006..2348416 1 NC_002976.3 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2348416 3242935 SERP2309 Staphylococcus epidermidis RP62A AsnC family transcriptional regulator YP_189859.1 2348006 D 176279 CDS YP_189860.1 57865768 3242937 complement(2349132..2349650) 1 NC_002976.3 identified by match to protein family HMM PF00583; acetyltransferase 2349650 3242937 SERP2311 Staphylococcus epidermidis RP62A acetyltransferase YP_189860.1 2349132 R 176279 CDS YP_189861.1 57865769 3242938 2350001..2351497 1 NC_002976.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2351497 mqo-3 3242938 mqo-3 Staphylococcus epidermidis RP62A malate:quinone oxidoreductase YP_189861.1 2350001 D 176279 CDS YP_189862.1 57865770 3242939 complement(2352266..2352370) 1 NC_002976.3 hypothetical protein 2352370 3242939 SERP2313 Staphylococcus epidermidis RP62A hypothetical protein YP_189862.1 2352266 R 176279 CDS YP_189863.1 57865771 3242940 2352715..2353230 1 NC_002976.3 identified by similarity to OMNI:SA2711; match to protein family HMM PF04264; hypothetical protein 2353230 3242940 SERP2314 Staphylococcus epidermidis RP62A hypothetical protein YP_189863.1 2352715 D 176279 CDS YP_189864.1 57865772 3242941 complement(2353490..2354467) 1 NC_002976.3 identified by similarity to GP:6441050; match to protein family HMM PF03758; drp35 protein 2354467 drp35 3242941 drp35 Staphylococcus epidermidis RP62A drp35 protein YP_189864.1 2353490 R 176279 CDS YP_189865.1 57865780 3241120 2354749..2355711 1 NC_002976.3 identified by match to protein family HMM PF00581; hypothetical protein 2355711 3241120 SERP2316 Staphylococcus epidermidis RP62A hypothetical protein YP_189865.1 2354749 D 176279 CDS YP_189866.1 57865781 3242994 2355905..2356543 1 NC_002976.3 identified by similarity to EGAD:42780; match to protein family HMM PF01470; match to protein family HMM TIGR00504; pyrrolidone-carboxylate peptidase 2356543 pcp 3242994 pcp Staphylococcus epidermidis RP62A pyrrolidone-carboxylate peptidase YP_189866.1 2355905 D 176279 CDS YP_189867.1 57865782 3242995 complement(2356576..2356968) 1 NC_002976.3 hypothetical protein 2356968 3242995 SERP2318 Staphylococcus epidermidis RP62A hypothetical protein YP_189867.1 2356576 R 176279 CDS YP_189868.1 57865783 3242996 complement(2356984..2357136) 1 NC_002976.3 hypothetical protein 2357136 3242996 SERP2319 Staphylococcus epidermidis RP62A hypothetical protein YP_189868.1 2356984 R 176279 CDS YP_189869.1 57865784 3242997 2357317..2358909 1 NC_002976.3 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 2358909 3242997 SERP2320 Staphylococcus epidermidis RP62A choline/carnitine/betaine transporter YP_189869.1 2357317 D 176279 CDS YP_189870.1 57865785 3242998 complement(2359074..2359586) 1 NC_002976.3 hypothetical protein 2359586 3242998 SERP2321 Staphylococcus epidermidis RP62A hypothetical protein YP_189870.1 2359074 R 176279 CDS YP_189871.1 57865786 3242999 2359691..2359798 1 NC_002976.3 hypothetical protein 2359798 3242999 SERP2322 Staphylococcus epidermidis RP62A hypothetical protein YP_189871.1 2359691 D 176279 CDS YP_189872.1 57865787 3243000 complement(2359862..2360017) 1 NC_002976.3 truncated IS1272 transposase 2360017 3243000 SERP2323 Staphylococcus epidermidis RP62A truncated IS1272 transposase YP_189872.1 2359862 R 176279 CDS YP_189873.1 57865796 3242407 complement(2360269..2361546) 1 NC_002976.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 2361546 3242407 SERP2324 Staphylococcus epidermidis RP62A branched-chain alpha-keto acid dehydrogenase subunit E2 YP_189873.1 2360269 R 176279 CDS YP_189874.1 57865797 3242408 complement(2361560..2362600) 1 NC_002976.3 identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780; acetoin dehydrogenase, E1 component, beta subunit 2362600 3242408 SERP2325 Staphylococcus epidermidis RP62A acetoin dehydrogenase, E1 component, beta subunit YP_189874.1 2361560 R 176279 CDS YP_189875.1 57865798 3242409 complement(2362671..2363624) 1 NC_002976.3 identified by similarity to SP:P27745; match to protein family HMM PF00676; acetoin dehydrogenase, E1 component, alpha subunit 2363624 3242409 SERP2326 Staphylococcus epidermidis RP62A acetoin dehydrogenase, E1 component, alpha subunit YP_189875.1 2362671 R 176279 CDS YP_189876.1 57865799 3242410 complement(2363666..2365018) 1 NC_002976.3 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase 2365018 3242410 SERP2327 Staphylococcus epidermidis RP62A acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase YP_189876.1 2363666 R 176279 CDS YP_189877.1 57865800 3242240 2365343..2366761 1 NC_002976.3 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 2366761 3242240 SERP2328 Staphylococcus epidermidis RP62A anion transporter family protein YP_189877.1 2365343 D 176279 CDS YP_189878.1 57865801 3242241 complement(2366772..2366873) 1 NC_002976.3 hypothetical protein 2366873 3242241 SERP2329 Staphylococcus epidermidis RP62A hypothetical protein YP_189878.1 2366772 R 176279 CDS YP_189879.1 57865809 3240923 2367078..2367989 1 NC_002976.3 identified by similarity to EGAD:28994; thiamine biosynthesis protein 2367989 3240923 SERP2330 Staphylococcus epidermidis RP62A thiamine biosynthesis protein YP_189879.1 2367078 D 176279 CDS YP_189880.1 57865810 3240924 complement(2368097..2369002) 1 NC_002976.3 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; rarD protein 2369002 rarD 3240924 rarD Staphylococcus epidermidis RP62A rarD protein YP_189880.1 2368097 R 176279 CDS YP_189881.1 57865811 3240925 complement(2369134..2369637) 1 NC_002976.3 identified by similarity to OMNI:SA0406; hypothetical protein 2369637 3240925 SERP2332 Staphylococcus epidermidis RP62A hypothetical protein YP_189881.1 2369134 R 176279 CDS YP_189882.1 57865670 3242555 complement(2369726..2371429) 1 NC_002976.3 identified by similarity to OMNI:VCA0786; hypothetical protein 2371429 3242555 SERP2333 Staphylococcus epidermidis RP62A hypothetical protein YP_189882.1 2369726 R 176279 CDS YP_189883.1 57865671 3242556 complement(2371584..2372924) 1 NC_002976.3 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00879; major facilitator superfamily protein 2372924 3242556 SERP2334 Staphylococcus epidermidis RP62A major facilitator superfamily protein YP_189883.1 2371584 R 176279 CDS YP_189884.1 57865672 3242557 2372970..2373065 1 NC_002976.3 hypothetical protein 2373065 3242557 SERP2335 Staphylococcus epidermidis RP62A hypothetical protein YP_189884.1 2372970 D 176279 CDS YP_189885.1 57865673 3242558 complement(2373203..2375389) 1 NC_002976.3 identified by similarity to SP:Q02510; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase 2375389 3242558 SERP2336 Staphylococcus epidermidis RP62A lipase YP_189885.1 2373203 R 176279 CDS YP_189886.1 57865674 3242559 complement(2375760..2376383) 1 NC_002976.3 identified by match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase 2376383 3242559 SERP2337 Staphylococcus epidermidis RP62A 4'-phosphopantetheinyl transferase YP_189886.1 2375760 R 176279 CDS YP_189887.1 57865675 3242560 complement(2376393..2383556) 1 NC_002976.3 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; peptide synthetase 2383556 3242560 SERP2338 Staphylococcus epidermidis RP62A peptide synthetase YP_189887.1 2376393 R 176279 CDS YP_189888.1 57865676 3242093 complement(2383754..2384995) 1 NC_002976.3 identified by similarity to OMNI:NTL01TV0222; drug transporter 2384995 3242093 SERP2339 Staphylococcus epidermidis RP62A drug transporter YP_189888.1 2383754 R 176279 CDS YP_189889.1 57865685 3242102 complement(2385517..2386935) 1 NC_002976.3 identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2386935 3242102 SERP2340 Staphylococcus epidermidis RP62A EmrB/QacA family drug resistance transporter YP_189889.1 2385517 R 176279 CDS YP_189890.1 57865686 3242292 complement(2387496..2387744) 1 NC_002976.3 hypothetical protein 2387744 3242292 SERP2341 Staphylococcus epidermidis RP62A hypothetical protein YP_189890.1 2387496 R 176279 CDS YP_189891.1 57865687 3242293 2388076..2389524 1 NC_002976.3 identified by similarity to GP:1856977; drug transporter 2389524 3242293 SERP2342 Staphylococcus epidermidis RP62A drug transporter YP_189891.1 2388076 D 176279 CDS YP_189892.1 57865688 3242294 complement(2389604..2389978) 1 NC_002976.3 identified by similarity to OMNI:SA0709; match to protein family HMM PF03610; phosphotransferase mannnose-specific family component IIA 2389978 3242294 SERP2343 Staphylococcus epidermidis RP62A phosphotransferase mannnose-specific family component IIA YP_189892.1 2389604 R 176279 CDS YP_189893.1 57865689 3242295 complement(2389982..2390557) 1 NC_002976.3 identified by match to protein family HMM PF02734; DAK2 domain-containing protein 2390557 3242295 SERP2344 Staphylococcus epidermidis RP62A DAK2 domain-containing protein YP_189893.1 2389982 R 176279 CDS YP_189894.1 57865690 3242296 complement(2390612..2391574) 1 NC_002976.3 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2391574 3242296 SERP2345 Staphylococcus epidermidis RP62A dihydroxyacetone kinase subunit DhaK YP_189894.1 2390612 R 176279 CDS YP_189895.1 57865691 3242297 complement(2391590..2392693) 1 NC_002976.3 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 2392693 gldA 3242297 gldA Staphylococcus epidermidis RP62A glycerol dehydrogenase YP_189895.1 2391590 R 176279 CDS YP_189896.1 57865692 3242298 complement(2392998..2393963) 1 NC_002976.3 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2393963 bioB 3242298 bioB Staphylococcus epidermidis RP62A biotin synthase YP_189896.1 2392998 R 176279 CDS YP_189897.1 57865700 3241023 complement(2395235..2395663) 1 NC_002976.3 catalyzes resistance to fosfomycin by the addition of a thiol cofactor; fosfomycin resistance protein FosB 2395663 fosB 3241023 fosB Staphylococcus epidermidis RP62A fosfomycin resistance protein FosB YP_189897.1 2395235 R 176279 CDS YP_189898.1 57865701 3240870 complement(2395767..2395991) 1 NC_002976.3 identified by similarity to OMNI:SA1099; hypothetical protein 2395991 3240870 SERP2350 Staphylococcus epidermidis RP62A hypothetical protein YP_189898.1 2395767 R 176279 CDS YP_189899.1 57865702 3240871 2396476..2397477 1 NC_002976.3 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2397477 arcB-2 3240871 arcB-2 Staphylococcus epidermidis RP62A ornithine carbamoyltransferase YP_189899.1 2396476 D 176279 CDS YP_189900.1 57865703 3240872 2397500..2398432 1 NC_002976.3 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2398432 arcC 3240872 arcC Staphylococcus epidermidis RP62A carbamate kinase YP_189900.1 2397500 D 176279 CDS YP_189901.1 57865704 3240873 2398597..2400162 1 NC_002976.3 identified by match to protein family HMM PF03606; hypothetical protein 2400162 3240873 SERP2353 Staphylococcus epidermidis RP62A hypothetical protein YP_189901.1 2398597 D 176279 CDS YP_189902.1 57865705 3240874 complement(2400433..2401200) 1 NC_002976.3 identified by similarity to GP:7453518; match to protein family HMM PF00756; tributyrin esterase EstA 2401200 3240874 SERP2354 Staphylococcus epidermidis RP62A tributyrin esterase EstA YP_189902.1 2400433 R 176279 CDS YP_189903.1 57865706 3240875 complement(2401241..2401888) 1 NC_002976.3 identified by similarity to EGAD:109206; match to protein family HMM PF00528; amino acid ABC transporter permease 2401888 3240875 SERP2355 Staphylococcus epidermidis RP62A amino acid ABC transporter permease YP_189903.1 2401241 R 176279 CDS YP_189904.1 57865715 3241096 complement(2401891..2402850) 1 NC_002976.3 identified by similarity to EGAD:109208; match to protein family HMM PF04069; amino acid ABC transporter amino acid-binding protein 2402850 3241096 SERP2356 Staphylococcus epidermidis RP62A amino acid ABC transporter amino acid-binding protein YP_189904.1 2401891 R 176279 CDS YP_189905.1 57865716 3241097 complement(2402869..2403504) 1 NC_002976.3 identified by similarity to EGAD:109210; match to protein family HMM PF00528; amino acid ABC transporter permease 2403504 3241097 SERP2357 Staphylococcus epidermidis RP62A amino acid ABC transporter permease YP_189905.1 2402869 R 176279 CDS YP_189906.1 57865717 3241098 complement(2403501..2404688) 1 NC_002976.3 identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; amino acid ABC transporter ATP-binding protein 2404688 3241098 SERP2358 Staphylococcus epidermidis RP62A amino acid ABC transporter ATP-binding protein YP_189906.1 2403501 R 176279 CDS YP_189907.1 57865718 3241099 complement(2404823..2405311) 1 NC_002976.3 identified by similarity to OMNI:SA2343; hypothetical protein 2405311 3241099 SERP2359 Staphylococcus epidermidis RP62A hypothetical protein YP_189907.1 2404823 R 176279 CDS YP_189908.1 57865719 3241100 complement(2405308..2406273) 1 NC_002976.3 identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase 2406273 3241100 SERP2360 Staphylococcus epidermidis RP62A 3-hydroxyacyl-CoA dehydrogenase YP_189908.1 2405308 R 176279 CDS YP_189909.1 57865720 3241771 complement(2406273..2407169) 1 NC_002976.3 identified by similarity to GP:9951711; match to protein family HMM PF05853; hypothetical protein 2407169 3241771 SERP2361 Staphylococcus epidermidis RP62A hypothetical protein YP_189909.1 2406273 R 176279 CDS YP_189910.1 57865721 3241772 complement(2407305..2407844) 1 NC_002976.3 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2407844 3241772 SERP2362 Staphylococcus epidermidis RP62A TetR family transcriptional regulator YP_189910.1 2407305 R 176279 CDS YP_189911.1 57865730 3240429 complement(2408310..2409668) 1 NC_002976.3 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid ABC transporter substrate-binding protein 2409668 brnQ-2 3240429 brnQ-2 Staphylococcus epidermidis RP62A branched-chain amino acid ABC transporter substrate-binding protein YP_189911.1 2408310 R 176279 CDS YP_189912.1 57865731 3240430 2410022..2411239 1 NC_002976.3 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2411239 3240430 SERP2364 Staphylococcus epidermidis RP62A succinyl-diaminopimelate desuccinylase YP_189912.1 2410022 D 176279 CDS YP_189913.1 57865732 3240431 complement(2411378..2412133) 1 NC_002976.3 identified by similarity to SP:O68575; match to protein family HMM PF02143; match to protein family HMM PF04055; pyruvate formate-lyase-activating enzyme 2412133 pflA 3240431 pflA Staphylococcus epidermidis RP62A pyruvate formate-lyase-activating enzyme YP_189913.1 2411378 R 176279 CDS YP_189914.1 57865733 3240432 complement(2412155..2414401) 1 NC_002976.3 identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 2414401 pflB 3240432 pflB Staphylococcus epidermidis RP62A formate acetyltransferase YP_189914.1 2412155 R 176279 CDS YP_189915.1 57865734 3240433 complement(2415142..2416332) 1 NC_002976.3 transporter 2416332 3240433 SERP2367 Staphylococcus epidermidis RP62A transporter YP_189915.1 2415142 R 176279 CDS YP_189916.1 57865735 3240434 complement(2416344..2417093) 1 NC_002976.3 identified by similarity to EGAD:10112; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 2417093 3240434 SERP2368 Staphylococcus epidermidis RP62A peptide ABC transporter ATP-binding protein YP_189916.1 2416344 R 176279 CDS YP_189917.1 57865736 3240435 complement(2417086..2417901) 1 NC_002976.3 identified by similarity to EGAD:24096; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 2417901 3240435 SERP2369 Staphylococcus epidermidis RP62A peptide ABC transporter ATP-binding protein YP_189917.1 2417086 R 176279 CDS YP_189918.1 57865744 3242237 complement(2417888..2418766) 1 NC_002976.3 identified by similarity to EGAD:128691; match to protein family HMM PF00528; peptide ABC transporter permease 2418766 3242237 SERP2370 Staphylococcus epidermidis RP62A peptide ABC transporter permease YP_189918.1 2417888 R 176279 CDS YP_189919.1 57865745 3242238 complement(2418763..2419698) 1 NC_002976.3 identified by similarity to GP:5457576; match to protein family HMM PF00528; peptide ABC transporter permease 2419698 3242238 SERP2371 Staphylococcus epidermidis RP62A peptide ABC transporter permease YP_189919.1 2418763 R 176279 CDS YP_189920.1 57865746 3242239 complement(2419711..2421309) 1 NC_002976.3 identified by similarity to EGAD:165398; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein 2421309 3242239 SERP2372 Staphylococcus epidermidis RP62A peptide ABC transporter substrate-binding protein YP_189920.1 2419711 R 176279 CDS YP_189921.1 57865747 3242470 complement(2421360..2422652) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2353; hypothetical protein 2422652 3242470 SERP2373 Staphylococcus epidermidis RP62A hypothetical protein YP_189921.1 2421360 R 176279 CDS YP_189922.1 57865748 3242471 complement(2422645..2423460) 1 NC_002976.3 identified by similarity to OMNI:SA2478; hypothetical protein 2423460 3242471 SERP2374 Staphylococcus epidermidis RP62A hypothetical protein YP_189922.1 2422645 R 176279 CDS YP_189923.1 57865749 3242472 complement(2423457..2424296) 1 NC_002976.3 diaminopimelate epimerase 2424296 3242472 SERP2375 Staphylococcus epidermidis RP62A diaminopimelate epimerase YP_189923.1 2423457 R 176279 CDS YP_189924.1 57865750 3242473 2424381..2424482 1 NC_002976.3 hypothetical protein 2424482 3242473 SERP2376 Staphylococcus epidermidis RP62A hypothetical protein YP_189924.1 2424381 D 176279 CDS YP_189925.1 57865751 3242474 2424484..2424930 1 NC_002976.3 hypothetical protein 2424930 3242474 SERP2377 Staphylococcus epidermidis RP62A hypothetical protein YP_189925.1 2424484 D 176279 CDS YP_189926.1 57865759 3240935 2424945..2425634 1 NC_002976.3 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2425634 3240935 SERP2378 Staphylococcus epidermidis RP62A ABC transporter ATP-binding protein YP_189926.1 2424945 D 176279 CDS YP_189927.1 57865760 3240936 complement(2425762..2426535) 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase 2426535 3240936 SERP2379 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_189927.1 2425762 R 176279 CDS YP_189928.1 57865761 3240937 complement(2426704..2428080) 1 NC_002976.3 identified by match to protein family HMM PF00083; drug transporter 2428080 3240937 SERP2380 Staphylococcus epidermidis RP62A drug transporter YP_189928.1 2426704 R 176279 CDS YP_189929.1 57865762 3240938 complement(2428109..2431126) 1 NC_002976.3 identified by similarity to EGAD:16535; match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF04205; match to protein family HMM TIGR01813; NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit 2431126 3240938 SERP2381 Staphylococcus epidermidis RP62A NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit YP_189929.1 2428109 R 176279 CDS YP_189930.1 57865763 3241840 complement(2431209..2432126) 1 NC_002976.3 identified by match to protein family HMM PF02424; ApbE family protein 2432126 3241840 SERP2382 Staphylococcus epidermidis RP62A ApbE family protein YP_189930.1 2431209 R 176279 CDS YP_189931.1 57865764 3241841 complement(2432528..2433523) 1 NC_002976.3 identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein 2433523 3241841 SERP2383 Staphylococcus epidermidis RP62A ABC transporter substrate-binding protein YP_189931.1 2432528 R 176279 CDS YP_189932.1 57865765 3241842 2433780..2434886 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2469; hypothetical protein 2434886 3241842 SERP2384 Staphylococcus epidermidis RP62A hypothetical protein YP_189932.1 2433780 D 176279 CDS YP_189933.1 57865773 3242942 2434880..2436262 1 NC_002976.3 identified by similarity to EGAD:7439; hypothetical protein 2436262 3242942 SERP2385 Staphylococcus epidermidis RP62A hypothetical protein YP_189933.1 2434880 D 176279 CDS YP_189934.1 57865774 3241024 2436232..2437113 1 NC_002976.3 identified by match to protein family HMM PF02492; cobalamin synthesis protein 2437113 3241024 SERP2386 Staphylococcus epidermidis RP62A cobalamin synthesis protein YP_189934.1 2436232 D 176279 CDS YP_189935.1 57865775 3241026 complement(2438258..2440189) 1 NC_002976.3 identified by similarity to GP:3789932; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase 2440189 geh-2 3241026 geh-2 Staphylococcus epidermidis RP62A lipase YP_189935.1 2438258 R 176279 CDS YP_189936.1 57865776 3241027 2440410..2440529 1 NC_002976.3 hypothetical protein 2440529 3241027 SERP2389 Staphylococcus epidermidis RP62A hypothetical protein YP_189936.1 2440410 D 176279 CDS YP_189937.1 57865777 3241028 2440678..2441865 1 NC_002976.3 identified by similarity to OMNI:SA1056; match to protein family HMM PF05543; cysteine protease precursor SspB 2441865 sspB 3241028 sspB Staphylococcus epidermidis RP62A cysteine protease precursor SspB YP_189937.1 2440678 D 176279 CDS YP_189938.1 57865778 3241029 2441883..2442200 1 NC_002976.3 identified by similarity to OMNI:SA1971; SspC protein 2442200 sspC 3241029 sspC Staphylococcus epidermidis RP62A SspC protein YP_189938.1 2441883 D 176279 CDS YP_189939.1 57865779 3241119 complement(2442370..2449578) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM PF00801; match to protein family HMM PF04650; match to protein family HMM PF05345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall associated biofilm protein 2449578 bhp 3241119 bhp Staphylococcus epidermidis RP62A cell wall associated biofilm protein YP_189939.1 2442370 R 176279 CDS YP_189940.1 57865788 3243001 complement(2449900..2450586) 1 NC_002976.3 catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase 2450586 bioW 3243001 bioW Staphylococcus epidermidis RP62A 6-carboxyhexanoate--CoA ligase YP_189940.1 2449900 R 176279 CDS YP_189941.1 57865789 3243002 complement(2450579..2451712) 1 NC_002976.3 identified by match to protein family HMM PF00155; match to protein family HMM PF00222; aminotransferase, class II 2451712 3243002 SERP2394 Staphylococcus epidermidis RP62A aminotransferase, class II YP_189941.1 2450579 R 176279 CDS YP_189942.1 57865790 3242401 complement(2451723..2453078) 1 NC_002976.3 identified by similarity to EGAD:45704; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2453078 bioA 3242401 bioA Staphylococcus epidermidis RP62A adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_189942.1 2451723 R 176279 CDS YP_189943.1 57865791 3242402 complement(2453071..2453742) 1 NC_002976.3 identified by similarity to SP:P22818; match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthase 2453742 bioD 3242402 bioD Staphylococcus epidermidis RP62A dethiobiotin synthase YP_189943.1 2453071 R 176279 CDS YP_189944.1 57865792 3242403 complement(2454081..2454233) 1 NC_002976.3 identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 2454233 3242403 SERP2397 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_189944.1 2454081 R 176279 CDS YP_189945.1 57865793 3242404 complement(2454490..2461683) 1 NC_002976.3 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; accumulation associated protein 2461683 aap 3242404 aap Staphylococcus epidermidis RP62A accumulation associated protein YP_189945.1 2454490 R 176279 CDS YP_189946.1 57865794 3242405 2461814..2461912 1 NC_002976.3 hypothetical protein 2461912 3242405 SERP2399 Staphylococcus epidermidis RP62A hypothetical protein YP_189946.1 2461814 D 176279 CDS YP_189947.1 57865795 3242406 complement(2462102..2462254) 1 NC_002976.3 identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 2462254 3242406 SERP2400 Staphylococcus epidermidis RP62A phenol soluble modulin beta 1 YP_189947.1 2462102 R 176279 CDS YP_189948.1 57865802 3242242 complement(2462460..2463194) 1 NC_002976.3 identified by match to protein family HMM PF00089; serine protease 2463194 3242242 SERP2401 Staphylococcus epidermidis RP62A serine protease YP_189948.1 2462460 R 176279 CDS YP_189949.1 57865803 3242243 2463271..2463432 1 NC_002976.3 hypothetical protein 2463432 3242243 SERP2402 Staphylococcus epidermidis RP62A hypothetical protein YP_189949.1 2463271 D 176279 CDS YP_189950.1 57865804 3242244 2463875..2464216 1 NC_002976.3 hypothetical protein 2464216 3242244 SERP2403 Staphylococcus epidermidis RP62A hypothetical protein YP_189950.1 2463875 D 176279 CDS YP_189951.1 57865805 3242245 2464409..2465383 1 NC_002976.3 iron ABC transporter substrate-binding protein 2465383 3242245 SERP2404 Staphylococcus epidermidis RP62A iron ABC transporter substrate-binding protein YP_189951.1 2464409 D 176279 CDS YP_189952.1 57865806 3242246 2465380..2466918 1 NC_002976.3 identified by match to protein family HMM PF02518; sensor histidine kinase 2466918 3242246 SERP2405 Staphylococcus epidermidis RP62A sensor histidine kinase YP_189952.1 2465380 D 176279 CDS YP_189953.1 57865807 3242247 2466930..2467685 1 NC_002976.3 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 2467685 3242247 SERP2406 Staphylococcus epidermidis RP62A AraC family transcriptional regulator YP_189953.1 2466930 D 176279 CDS YP_189954.1 57865808 3242249 2469380..2469874 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0223; match to protein family HMM PF04140; hypothetical protein 2469874 3242249 SERP2408 Staphylococcus epidermidis RP62A hypothetical protein YP_189954.1 2469380 D 176279 CDS YP_189955.1 57865818 3242944 complement(2471339..2471446) 1 NC_002976.3 hypothetical protein 2471446 3242944 SERP2410 Staphylococcus epidermidis RP62A hypothetical protein YP_189955.1 2471339 R 176279 CDS YP_189956.1 57865819 3242945 complement(2471753..2472520) 1 NC_002976.3 identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase 2472520 3242945 SERP2411 Staphylococcus epidermidis RP62A short chain dehydrogenase/reductase family oxidoreductase YP_189956.1 2471753 R 176279 CDS YP_189957.1 57865820 3242946 complement(2473294..2474778) 1 NC_002976.3 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2474778 mqo-4 3242946 mqo-4 Staphylococcus epidermidis RP62A malate:quinone oxidoreductase YP_189957.1 2473294 R 176279 CDS YP_189958.1 57865821 3242947 2474977..2475957 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0092; match to protein family HMM PF01207; hypothetical protein 2475957 3242947 SERP2413 Staphylococcus epidermidis RP62A hypothetical protein YP_189958.1 2474977 D 176279 CDS YP_189959.1 57865822 3242948 2476275..2476634 1 NC_002976.3 identified by similarity to GP:13491619; lipoprotein 2476634 3242948 SERP2414 Staphylococcus epidermidis RP62A lipoprotein YP_189959.1 2476275 D 176279 CDS YP_189960.1 57865823 3242949 2476845..2476940 1 NC_002976.3 hypothetical protein 2476940 3242949 SERP2415 Staphylococcus epidermidis RP62A hypothetical protein YP_189960.1 2476845 D 176279 CDS YP_189961.1 57865824 3242950 complement(2477064..2477180) 1 NC_002976.3 hypothetical protein 2477180 3242950 SERP2416 Staphylococcus epidermidis RP62A hypothetical protein YP_189961.1 2477064 R 176279 CDS YP_189962.1 57865812 3240926 complement(2477247..2478104) 1 NC_002976.3 lipoprotein 2478104 3240926 SERP2417 Staphylococcus epidermidis RP62A lipoprotein YP_189962.1 2477247 R 176279 CDS YP_189963.1 57865813 3240927 2478690..2479100 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2360; hypothetical protein 2479100 3240927 SERP2418 Staphylococcus epidermidis RP62A hypothetical protein YP_189963.1 2478690 D 176279 CDS YP_189964.1 57865814 3240928 complement(2479343..2479528) 1 NC_002976.3 hypothetical protein 2479528 3240928 SERP2419 Staphylococcus epidermidis RP62A hypothetical protein YP_189964.1 2479343 R 176279 CDS YP_189965.1 57865815 3240929 complement(2479838..2480083) 1 NC_002976.3 hypothetical protein 2480083 3240929 SERP2420 Staphylococcus epidermidis RP62A hypothetical protein YP_189965.1 2479838 R 176279 CDS YP_189966.1 57865816 3240930 complement(2480169..2481056) 1 NC_002976.3 identified by similarity to OMNI:SA0433; match to protein family HMM PF00924; hypothetical protein 2481056 3240930 SERP2421 Staphylococcus epidermidis RP62A hypothetical protein YP_189966.1 2480169 R 176279 CDS YP_189967.1 57865817 3240931 complement(2481410..2482195) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2482195 3240931 SERP2422 Staphylococcus epidermidis RP62A lipoprotein YP_189967.1 2481410 R 176279 CDS YP_189968.1 57865825 3242951 complement(2482536..2483315) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2483315 3242951 SERP2423 Staphylococcus epidermidis RP62A lipoprotein YP_189968.1 2482536 R 176279 CDS YP_189969.1 57865826 3242387 complement(2483570..2483698) 1 NC_002976.3 hypothetical protein 2483698 3242387 SERP2424 Staphylococcus epidermidis RP62A hypothetical protein YP_189969.1 2483570 R 176279 CDS YP_189970.1 57865827 3242388 complement(2483712..2484596) 1 NC_002976.3 identified by match to protein family HMM PF03773; hypothetical protein 2484596 3242388 SERP2425 Staphylococcus epidermidis RP62A hypothetical protein YP_189970.1 2483712 R 176279 CDS YP_189971.1 57865828 3242389 complement(2484684..2484977) 1 NC_002976.3 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2484977 3242389 SERP2426 Staphylococcus epidermidis RP62A ArsR family transcriptional regulator YP_189971.1 2484684 R 176279 CDS YP_189972.1 57865829 3242390 2485525..2485872 1 NC_002976.3 arsenical resistance operon trans-acting repressor 2485872 arsD 3242390 arsD Staphylococcus epidermidis RP62A arsenical resistance operon trans-acting repressor YP_189972.1 2485525 D 176279 CDS YP_189973.1 57865830 3242391 2485886..2487583 1 NC_002976.3 identified by similarity to SP:O50593; match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase 2487583 arsA 3242391 arsA Staphylococcus epidermidis RP62A arsenical pump-driving ATPase YP_189973.1 2485886 D 176279 CDS YP_189974.1 57865831 3242392 2487733..2488047 1 NC_002976.3 identified by similarity to EGAD:10168; match to protein family HMM PF01022; arsenical resistance operon repressor 2488047 arsR-2 3242392 arsR-2 Staphylococcus epidermidis RP62A arsenical resistance operon repressor YP_189974.1 2487733 D 176279 CDS YP_189975.1 57865832 3242393 2488050..2489339 1 NC_002976.3 identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935; arsenical pump membrane protein 2489339 arsB 3242393 arsB Staphylococcus epidermidis RP62A arsenical pump membrane protein YP_189975.1 2488050 D 176279 CDS YP_189976.1 57865842 3242360 2489358..2489753 1 NC_002976.3 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 2489753 arsC-2 3242360 arsC-2 Staphylococcus epidermidis RP62A arsenate reductase YP_189976.1 2489358 D 176279 CDS YP_189977.1 57865843 3242361 complement(2489814..2490572) 1 NC_002976.3 identified by similarity to GP:7592615; match to protein family HMM PF01925; hypothetical protein 2490572 3242361 SERP2432 Staphylococcus epidermidis RP62A hypothetical protein YP_189977.1 2489814 R 176279 CDS YP_189978.1 57865844 3242362 complement(2490569..2490829) 1 NC_002976.3 identified by similarity to OMNI:SA0048; match to protein family HMM PF02583; hypothetical protein 2490829 3242362 SERP2433 Staphylococcus epidermidis RP62A hypothetical protein YP_189978.1 2490569 R 176279 CDS YP_189979.1 57865845 3240665 2490968..2492038 1 NC_002976.3 identified by match to protein family HMM PF00581; match to protein family HMM PF01206; rhodanese-like domain-containing protein 2492038 3240665 SERP2434 Staphylococcus epidermidis RP62A rhodanese-like domain-containing protein YP_189979.1 2490968 D 176279 CDS YP_189980.1 57865846 3240666 2492057..2493385 1 NC_002976.3 identified by match to protein family HMM PF00581; match to protein family HMM PF00753; metallo-beta-lactamase 2493385 3240666 SERP2435 Staphylococcus epidermidis RP62A metallo-beta-lactamase YP_189980.1 2492057 D 176279 CDS YP_189981.1 57865847 3240667 complement(2493466..2493582) 1 NC_002976.3 hypothetical protein 2493582 3240667 SERP2436 Staphylococcus epidermidis RP62A hypothetical protein YP_189981.1 2493466 R 176279 CDS YP_189982.1 57865848 3240668 complement(2493858..2494403) 1 NC_002976.3 lipoprotein 2494403 3240668 SERP2437 Staphylococcus epidermidis RP62A lipoprotein YP_189982.1 2493858 R 176279 CDS YP_189983.1 57865849 3240669 complement(2494421..2496484) 1 NC_002976.3 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; cation transporter E1-E2 family ATPase 2496484 3240669 SERP2438 Staphylococcus epidermidis RP62A cation transporter E1-E2 family ATPase YP_189983.1 2494421 R 176279 CDS YP_189984.1 57865850 3240670 complement(2496907..2497350) 1 NC_002976.3 hypothetical protein 2497350 3240670 SERP2439 Staphylococcus epidermidis RP62A hypothetical protein YP_189984.1 2496907 R 176279 CDS YP_189985.1 57865858 3242348 complement(2497936..2499297) 1 NC_002976.3 transporter 2499297 3242348 SERP2441 Staphylococcus epidermidis RP62A transporter YP_189985.1 2497936 R 176279 CDS YP_189986.1 57865859 3242349 2499425..2499577 1 NC_002976.3 hypothetical protein 2499577 3242349 SERP2442 Staphylococcus epidermidis RP62A hypothetical protein YP_189986.1 2499425 D 176279 CDS YP_189987.1 57865860 3242350 complement(2499631..2500392) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2500392 3242350 SERP2443 Staphylococcus epidermidis RP62A lipoprotein YP_189987.1 2499631 R 176279 CDS YP_189988.1 57865861 3242351 complement(2500623..2500715) 1 NC_002976.3 hypothetical protein 2500715 3242351 SERP2444 Staphylococcus epidermidis RP62A hypothetical protein YP_189988.1 2500623 R 176279 CDS YP_189989.1 57865862 3242352 complement(2500712..2501497) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2501497 3242352 SERP2445 Staphylococcus epidermidis RP62A lipoprotein YP_189989.1 2500712 R 176279 CDS YP_189990.1 57865863 3242258 complement(2501711..2502058) 1 NC_002976.3 identified by similarity to GP:4587882; PenN domain-containing protein 2502058 3242258 SERP2446 Staphylococcus epidermidis RP62A PenN domain-containing protein YP_189990.1 2501711 R 176279 CDS YP_189991.1 57865864 3242259 complement(2502065..2502826) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2502826 3242259 SERP2447 Staphylococcus epidermidis RP62A lipoprotein YP_189991.1 2502065 R 176279 CDS YP_189992.1 57865865 3242260 complement(2502918..2503196) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA2367; hypothetical protein 2503196 3242260 SERP2448 Staphylococcus epidermidis RP62A hypothetical protein YP_189992.1 2502918 R 176279 CDS YP_189993.1 57865873 3240972 complement(2503206..2503532) 1 NC_002976.3 identified by similarity to OMNI:SA2495; hypothetical protein 2503532 3240972 SERP2449 Staphylococcus epidermidis RP62A hypothetical protein YP_189993.1 2503206 R 176279 CDS YP_189994.1 57865874 3240974 complement(2504912..2505694) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2505694 3240974 SERP2451 Staphylococcus epidermidis RP62A lipoprotein YP_189994.1 2504912 R 176279 CDS YP_189995.1 57865875 3240975 complement(2505920..2506105) 1 NC_002976.3 hypothetical protein 2506105 3240975 SERP2452 Staphylococcus epidermidis RP62A hypothetical protein YP_189995.1 2505920 R 176279 CDS YP_189996.1 57865876 3240976 complement(2506108..2506887) 1 NC_002976.3 identified by similarity to OMNI:SA2497; match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2506887 3240976 SERP2453 Staphylococcus epidermidis RP62A lipoprotein YP_189996.1 2506108 R 176279 CDS YP_189997.1 57865877 3240977 complement(2507320..2508177) 1 NC_002976.3 hypothetical protein 2508177 3240977 SERP2454 Staphylococcus epidermidis RP62A hypothetical protein YP_189997.1 2507320 R 176279 CDS YP_189998.1 57865878 3240978 complement(2509031..2509765) 1 NC_002976.3 identified by similarity to EGAD:161071; match to protein family HMM TIGR01877; hypothetical protein 2509765 3240978 SERP2455 Staphylococcus epidermidis RP62A hypothetical protein YP_189998.1 2509031 R 176279 CDS YP_189999.1 57865879 3240979 complement(2509762..2511030) 1 NC_002976.3 hypothetical protein 2511030 3240979 SERP2456 Staphylococcus epidermidis RP62A hypothetical protein YP_189999.1 2509762 R 176279 CDS YP_190000.1 57865880 3240980 complement(2511030..2512052) 1 NC_002976.3 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899; CRISPR-associated Csm5 family protein 2512052 3240980 SERP2457 Staphylococcus epidermidis RP62A CRISPR-associated Csm5 family protein YP_190000.1 2511030 R 176279 CDS YP_190001.1 57865881 3240720 complement(2512055..2512969) 1 NC_002976.3 identified by similarity to EGAD:160971; match to protein family HMM PF03757; match to protein family HMM TIGR01903; CRISPR-associated Csm4 family protein 2512969 3240720 SERP2458 Staphylococcus epidermidis RP62A CRISPR-associated Csm4 family protein YP_190001.1 2512055 R 176279 CDS YP_190002.1 57865882 3240721 complement(2512974..2513618) 1 NC_002976.3 identified by similarity to EGAD:161002; match to protein family HMM PF03787; match to protein family HMM TIGR01867; CRISPR-associated Cmr4 family protein 2513618 3240721 SERP2459 Staphylococcus epidermidis RP62A CRISPR-associated Cmr4 family protein YP_190002.1 2512974 R 176279 CDS YP_190003.1 57865883 3240722 complement(2513620..2514006) 1 NC_002976.3 identified by similarity to EGAD:165031; match to protein family HMM TIGR01870; CRISPR-associated Csm2 family protein 2514006 3240722 SERP2460 Staphylococcus epidermidis RP62A CRISPR-associated Csm2 family protein YP_190003.1 2513620 R 176279 CDS YP_190004.1 57865884 3240723 complement(2514048..2516321) 1 NC_002976.3 identified by similarity to OMNI:MT2890; match to protein family HMM TIGR01871; match to protein family HMM TIGR01872; CRISPR-associated Csm1 family protein 2516321 3240723 SERP2461 Staphylococcus epidermidis RP62A CRISPR-associated Csm1 family protein YP_190004.1 2514048 R 176279 CDS YP_190005.1 57865885 3240724 complement(2516334..2516639) 1 NC_002976.3 identified by similarity to OMNI:NTL01SPL0813; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 2516639 3240724 SERP2462 Staphylococcus epidermidis RP62A CRISPR-associated Cas2 family protein YP_190005.1 2516334 R 176279 CDS YP_190006.1 57865886 3240725 complement(2516639..2517544) 1 NC_002976.3 identified by similarity to GP:12721471; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 2517544 cas1 3240725 cas1 Staphylococcus epidermidis RP62A CRISPR-associated Cas1 family protein YP_190006.1 2516639 R 176279 CDS YP_190007.1 57865887 3240726 complement(2518526..2518672) 1 NC_002976.3 hypothetical protein 2518672 3240726 SERP2464 Staphylococcus epidermidis RP62A hypothetical protein YP_190007.1 2518526 R 176279 CDS YP_190008.1 57865888 3240727 complement(2518785..2519564) 1 NC_002976.3 identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein 2519564 3240727 SERP2465 Staphylococcus epidermidis RP62A lipoprotein YP_190008.1 2518785 R 176279 CDS YP_190009.1 57865897 3240736 complement(2520289..2520420) 1 NC_002976.3 hypothetical protein 2520420 3240736 SERP2466 Staphylococcus epidermidis RP62A hypothetical protein YP_190009.1 2520289 R 176279 CDS YP_190010.1 57865898 3240737 2520514..2521017 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0058; hypothetical protein 2521017 3240737 SERP2467 Staphylococcus epidermidis RP62A hypothetical protein YP_190010.1 2520514 D 176279 CDS YP_190011.1 57865899 3240738 2521032..2521253 1 NC_002976.3 identified by similarity to GP:14021030; hypothetical protein 2521253 3240738 SERP2468 Staphylococcus epidermidis RP62A hypothetical protein YP_190011.1 2521032 D 176279 CDS YP_190012.1 57865900 3240739 complement(2521511..2522638) 1 NC_002976.3 identified by match to protein family HMM PF00107; alcohol dehydrogenase 2522638 3240739 SERP2469 Staphylococcus epidermidis RP62A alcohol dehydrogenase YP_190012.1 2521511 R 176279 CDS YP_190013.1 57865901 3241585 2523162..2523659 1 NC_002976.3 identified by match to protein family HMM PF00583; spermidine N1-acetyltransferase 2523659 3241585 SERP2470 Staphylococcus epidermidis RP62A spermidine N1-acetyltransferase YP_190013.1 2523162 D 176279 CDS YP_190014.1 57865902 3241586 complement(2523971..2525116) 1 NC_002976.3 type I restriction-modification system S subunit 2525116 3241586 SERP2471 Staphylococcus epidermidis RP62A type I restriction-modification system S subunit YP_190014.1 2523971 R 176279 CDS YP_190015.1 57865903 3241587 complement(2525109..2526665) 1 NC_002976.3 identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 2526665 hsdM 3241587 hsdM Staphylococcus epidermidis RP62A type I restriction-modification system, M subunit YP_190015.1 2525109 R 176279 CDS YP_190016.1 57865913 3242315 complement(2526666..2527352) 1 NC_002976.3 hypothetical protein 2527352 3242315 SERP2473 Staphylococcus epidermidis RP62A hypothetical protein YP_190016.1 2526666 R 176279 CDS YP_190017.1 57865914 3242316 complement(2527339..2530131) 1 NC_002976.3 identified by similarity to EGAD:10320; match to protein family HMM PF04313; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 2530131 hsdR 3242316 hsdR Staphylococcus epidermidis RP62A type I restriction-modification system, R subunit YP_190017.1 2527339 R 176279 CDS YP_190018.1 57865915 3242317 complement(2530339..2532159) 1 NC_002976.3 identified by similarity to GP:4894349; hypothetical protein 2532159 3242317 SERP2475 Staphylococcus epidermidis RP62A hypothetical protein YP_190018.1 2530339 R 176279 CDS YP_190019.1 57865916 3242318 complement(2532765..2533448) 1 NC_002976.3 GTP-binding protein 2533448 3242318 SERP2476 Staphylococcus epidermidis RP62A GTP-binding protein YP_190019.1 2532765 R 176279 CDS YP_190020.1 57865917 3242319 complement(2533580..2534899) 1 NC_002976.3 hypothetical protein 2534899 3242319 SERP2477 Staphylococcus epidermidis RP62A hypothetical protein YP_190020.1 2533580 R 176279 CDS YP_190021.1 57865918 3242320 complement(2535278..2536519) 1 NC_002976.3 hypothetical protein 2536519 3242320 SERP2478 Staphylococcus epidermidis RP62A hypothetical protein YP_190021.1 2535278 R 176279 CDS YP_190022.1 57865919 3242321 complement(2536600..2538108) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0084; match to protein family HMM PF00069; hypothetical protein 2538108 3242321 SERP2479 Staphylococcus epidermidis RP62A hypothetical protein YP_190022.1 2536600 R 176279 CDS YP_190023.1 57865920 3242525 2538223..2538849 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0083; hypothetical protein 2538849 3242525 SERP2480 Staphylococcus epidermidis RP62A hypothetical protein YP_190023.1 2538223 D 176279 CDS YP_190024.1 57865921 3242526 2538939..2539226 1 NC_002976.3 identified by similarity to GP:7594749; hypothetical protein 2539226 3242526 SERP2481 Staphylococcus epidermidis RP62A hypothetical protein YP_190024.1 2538939 D 176279 CDS YP_190025.1 57865931 3242588 2539394..2539768 1 NC_002976.3 identified by similarity to GP:7594750; hypothetical protein 2539768 3242588 SERP2482 Staphylococcus epidermidis RP62A hypothetical protein YP_190025.1 2539394 D 176279 CDS YP_190026.1 57865932 3242589 2539968..2540864 1 NC_002976.3 identified by similarity to GP:14245843; hypothetical protein 2540864 3242589 SERP2483 Staphylococcus epidermidis RP62A hypothetical protein YP_190026.1 2539968 D 176279 CDS YP_190027.1 57865933 3242590 2540874..2541743 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0078; hypothetical protein 2541743 3242590 SERP2484 Staphylococcus epidermidis RP62A hypothetical protein YP_190027.1 2540874 D 176279 CDS YP_190028.1 57865934 3242591 complement(2542288..2542845) 1 NC_002976.3 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 2542845 kdpC 3242591 kdpC Staphylococcus epidermidis RP62A potassium-transporting ATPase subunit C YP_190028.1 2542288 R 176279 CDS YP_190029.1 57865935 3242592 complement(2542861..2544882) 1 NC_002976.3 one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 2544882 kdpB 3242592 kdpB Staphylococcus epidermidis RP62A potassium-transporting ATPase subunit B YP_190029.1 2542861 R 176279 CDS YP_190030.1 57865936 3242593 complement(2544901..2546577) 1 NC_002976.3 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 2546577 kdpA 3242593 kdpA Staphylococcus epidermidis RP62A potassium-transporting ATPase subunit A YP_190030.1 2544901 R 176279 CDS YP_190031.1 57865937 3242594 2546650..2546793 1 NC_002976.3 hypothetical protein 2546793 3242594 SERP2488 Staphylococcus epidermidis RP62A hypothetical protein YP_190031.1 2546650 D 176279 CDS YP_190032.1 57865938 3242595 2546845..2549514 1 NC_002976.3 identified by similarity to EGAD:18674; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 2549514 kdpD 3242595 kdpD Staphylococcus epidermidis RP62A sensor histidine kinase KdpD YP_190032.1 2546845 D 176279 CDS YP_190033.1 57865946 3240520 2549489..2550184 1 NC_002976.3 identified by similarity to EGAD:91700; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdeP 2550184 kdeP 3240520 kdeP Staphylococcus epidermidis RP62A DNA-binding response regulator KdeP YP_190033.1 2549489 D 176279 CDS YP_190034.1 57865947 3240521 2550930..2551832 1 NC_002976.3 identified by match to protein family HMM PF03606; hypothetical protein 2551832 3240521 SERP2491 Staphylococcus epidermidis RP62A hypothetical protein YP_190034.1 2550930 D 176279 CDS YP_190035.1 57865948 3240503 complement(2552039..2552173) 1 NC_002976.3 hypothetical protein 2552173 3240503 SERP2492 Staphylococcus epidermidis RP62A hypothetical protein YP_190035.1 2552039 R 176279 CDS YP_190036.1 57865949 3240505 2553735..2554781 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0065; hypothetical protein 2554781 3240505 SERP2494 Staphylococcus epidermidis RP62A hypothetical protein YP_190036.1 2553735 D 176279 CDS YP_190037.1 57865950 3240506 2554974..2555270 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0064; hypothetical protein 2555270 3240506 SERP2495 Staphylococcus epidermidis RP62A hypothetical protein YP_190037.1 2554974 D 176279 CDS YP_190038.1 57865951 3240507 2555270..2557063 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0063; hypothetical protein 2557063 3240507 SERP2496 Staphylococcus epidermidis RP62A hypothetical protein YP_190038.1 2555270 D 176279 CDS YP_190039.1 57865952 3240508 2557181..2557282 1 NC_002976.3 hypothetical protein 2557282 3240508 SERP2497 Staphylococcus epidermidis RP62A hypothetical protein YP_190039.1 2557181 D 176279 CDS YP_190040.1 57865953 3240509 2557297..2558646 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239; cassette chromosome recombinase A 2558646 3240509 SERP2498 Staphylococcus epidermidis RP62A cassette chromosome recombinase A YP_190040.1 2557297 D 176279 CDS YP_190041.1 57865962 3240865 2558668..2560296 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239; cassette chromosome recombinase B 2560296 3240865 SERP2499 Staphylococcus epidermidis RP62A cassette chromosome recombinase B YP_190041.1 2558668 D 176279 CDS YP_190042.1 57865963 3240866 2560476..2560577 1 NC_002976.3 hypothetical protein 2560577 3240866 SERP2500 Staphylococcus epidermidis RP62A hypothetical protein YP_190042.1 2560476 D 176279 CDS YP_190043.1 57865833 3242394 2560814..2561164 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0060; hypothetical protein 2561164 3242394 SERP2501 Staphylococcus epidermidis RP62A hypothetical protein YP_190043.1 2560814 D 176279 CDS YP_190044.1 57865834 3242395 2561157..2561249 1 NC_002976.3 hypothetical protein 2561249 3242395 SERP2502 Staphylococcus epidermidis RP62A hypothetical protein YP_190044.1 2561157 D 176279 CDS YP_190045.1 57865835 3242353 2561251..2561562 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0059; hypothetical protein 2561562 3242353 SERP2503 Staphylococcus epidermidis RP62A hypothetical protein YP_190045.1 2561251 D 176279 CDS YP_190046.1 57865836 3242354 2561580..2562086 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0058; hypothetical protein 2562086 3242354 SERP2504 Staphylococcus epidermidis RP62A hypothetical protein YP_190046.1 2561580 D 176279 CDS YP_190047.1 57865837 3242355 2562107..2562424 1 NC_002976.3 identified by match to protein family HMM PF04002; RadC domain-containing protein 2562424 3242355 SERP2505 Staphylococcus epidermidis RP62A RadC domain-containing protein YP_190047.1 2562107 D 176279 CDS YP_190048.1 57865838 3242356 2562543..2563628 1 NC_002976.3 identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; transposase A 2563628 tnpA-3 3242356 tnpA-3 Staphylococcus epidermidis RP62A transposase A YP_190048.1 2562543 D 176279 CDS YP_190049.1 57865839 3242357 2563625..2565517 1 NC_002976.3 identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; transposase B 2565517 tnpB-3 3242357 tnpB-3 Staphylococcus epidermidis RP62A transposase B YP_190049.1 2563625 D 176279 CDS YP_190050.1 57865840 3242358 2565524..2565901 1 NC_002976.3 identified by similarity to EGAD:6135; transposase C 2565901 tnpC-3 3242358 tnpC-3 Staphylococcus epidermidis RP62A transposase C YP_190050.1 2565524 D 176279 CDS YP_190051.1 57865841 3242359 2566052..2566834 1 NC_002976.3 identified by similarity to EGAD:9921; match to protein family HMM PF01909; streptomycin 3''-adenylyltransferase 2566834 spC 3242359 spC Staphylococcus epidermidis RP62A streptomycin 3''-adenylyltransferase YP_190051.1 2566052 D 176279 CDS YP_190052.1 57865851 3240671 complement(2566960..2567691) 1 NC_002976.3 identified by similarity to EGAD:8703; match to protein family HMM PF00398; rRNA adenine N-6-methyltransferase 2567691 ermA-3 3240671 ermA-3 Staphylococcus epidermidis RP62A rRNA adenine N-6-methyltransferase YP_190052.1 2566960 R 176279 CDS YP_190054.1 57865852 3241788 2568225..2568887 1 NC_002976.3 hypothetical protein 2568887 3241788 SERP2512 Staphylococcus epidermidis RP62A hypothetical protein YP_190054.1 2568225 D 176279 CDS YP_190055.1 57865853 3241789 complement(2569226..2569855) 1 NC_002976.3 identified by match to protein family HMM PF01925; hypothetical protein 2569855 3241789 SERP2513 Staphylococcus epidermidis RP62A hypothetical protein YP_190055.1 2569226 R 176279 CDS YP_190056.1 57865854 3240672 complement(2569870..2570130) 1 NC_002976.3 identified by similarity to GP:14020990; match to protein family HMM PF02583; hypothetical protein 2570130 3240672 SERP2514 Staphylococcus epidermidis RP62A hypothetical protein YP_190056.1 2569870 R 176279 CDS YP_190057.1 57865855 3240673 2570266..2571330 1 NC_002976.3 identified by match to protein family HMM PF00581; match to protein family HMM PF01206; rhodanese-like domain-containing protein 2571330 3240673 SERP2515 Staphylococcus epidermidis RP62A rhodanese-like domain-containing protein YP_190057.1 2570266 D 176279 CDS YP_190058.1 57865856 3242345 complement(2572811..2573920) 1 NC_002976.3 identified by similarity to GP:14020995; match to protein family HMM PF00480; xylose repressor 2573920 xylR 3242345 xylR Staphylococcus epidermidis RP62A xylose repressor YP_190058.1 2572811 R 176279 CDS YP_190059.1 57865857 3242346 complement(2574115..2574327) 1 NC_002976.3 identified by similarity to GP:14020996; hypothetical protein 2574327 3242346 SERP2518 Staphylococcus epidermidis RP62A hypothetical protein YP_190059.1 2574115 R 176279 CDS YP_190060.1 57865866 3242261 complement(2574428..2574799) 1 NC_002976.3 identified by similarity to EGAD:6173; match to protein family HMM PF03965; methicillin-resistance regulatory protein MecI 2574799 mecI 3242261 mecI Staphylococcus epidermidis RP62A methicillin-resistance regulatory protein MecI YP_190060.1 2574428 R 176279 CDS YP_190061.1 57865867 3242262 complement(2574799..2576556) 1 NC_002976.3 identified by similarity to EGAD:8249; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; methicillin-resistance regulatory protein MecR1 2576556 mecR1 3242262 mecR1 Staphylococcus epidermidis RP62A methicillin-resistance regulatory protein MecR1 YP_190061.1 2574799 R 176279 CDS YP_190062.1 57865868 3242263 2576656..2578662 1 NC_002976.3 identified by similarity to EGAD:16370; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 2' 2578662 mecA 3242263 mecA Staphylococcus epidermidis RP62A penicillin-binding protein 2' YP_190062.1 2576656 D 176279 CDS YP_190063.1 57865869 3242264 complement(2578708..2579136) 1 NC_002976.3 identified by match to protein family HMM PF01575; acyl dehydratase MaoC 2579136 3242264 SERP2522 Staphylococcus epidermidis RP62A acyl dehydratase MaoC YP_190063.1 2578708 R 176279 CDS YP_190064.1 57865870 3242265 complement(2579233..2579976) 1 NC_002976.3 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase UgpQ 2579976 3242265 SERP2523 Staphylococcus epidermidis RP62A glycerophosphoryl diester phosphodiesterase UgpQ YP_190064.1 2579233 R 176279 CDS YP_190065.1 57867839 3240439 complement(2580485..2580715) 1 NC_002976.3 identified by similarity to OMNI:SA0030; hypothetical protein 2580715 3240439 SERP2524 Staphylococcus epidermidis RP62A hypothetical protein YP_190065.1 2580485 R 176279 CDS YP_190066.1 57865871 3242266 complement(2580813..2580980) 1 NC_002976.3 identified by similarity to GP:9937361; HMG-CoA synthase, truncation 2580980 3242266 SERP2525 Staphylococcus epidermidis RP62A HMG-CoA synthase, truncation YP_190066.1 2580813 R 176279 CDS YP_190067.1 57865872 3240971 2581238..2581912 1 NC_002976.3 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 2581912 3240971 SERP2526 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_190067.1 2581238 D 176279 CDS YP_190068.1 57865889 3240728 complement(2581944..2582183) 1 NC_002976.3 identified by similarity to OMNI:SA0027; hypothetical protein 2582183 3240728 SERP2527 Staphylococcus epidermidis RP62A hypothetical protein YP_190068.1 2581944 R 176279 CDS YP_190069.1 57865890 3240729 complement(2582598..2583893) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0026; hypothetical protein 2583893 3240729 SERP2528 Staphylococcus epidermidis RP62A hypothetical protein YP_190069.1 2582598 R 176279 CDS YP_190070.1 57865891 3240730 complement(2584176..2584655) 1 NC_002976.3 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2584655 3240730 SERP2529 Staphylococcus epidermidis RP62A rRNA large subunit methyltransferase YP_190070.1 2584176 R 176279 CDS YP_190071.1 57865892 3240731 complement(2585697..2586497) 1 NC_002976.3 identified by match to protein family HMM PF00753; metallo-beta-lactamase YycJ 2586497 yycJ 3240731 yycJ Staphylococcus epidermidis RP62A metallo-beta-lactamase YycJ YP_190071.1 2585697 R 176279 CDS YP_190072.1 57865893 3240732 complement(2587118..2587909) 1 NC_002976.3 identified by similarity to OMNI:SA0022; hypothetical protein 2587909 yycI 3240732 yycI Staphylococcus epidermidis RP62A hypothetical protein YP_190072.1 2587118 R 176279 CDS YP_190073.1 57865894 3240733 complement(2587910..2589247) 1 NC_002976.3 identified by similarity to GP:6689208; hypothetical protein 2589247 yycH 3240733 yycH Staphylococcus epidermidis RP62A hypothetical protein YP_190073.1 2587910 R 176279 CDS YP_190074.1 57865895 3240734 complement(2589240..2591072) 1 NC_002976.3 identified by similarity to OMNI:SA0020; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase YycG 2591072 yycG 3240734 yycG Staphylococcus epidermidis RP62A sensory box histidine kinase YycG YP_190074.1 2589240 R 176279 CDS YP_190075.1 57865896 3240735 complement(2591085..2591786) 1 NC_002976.3 identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator YycF 2591786 yycF 3240735 yycF Staphylococcus epidermidis RP62A DNA-binding response regulator YycF YP_190075.1 2591085 R 176279 CDS YP_190076.1 57865904 3241588 complement(2591830..2591922) 1 NC_002976.3 hypothetical protein 2591922 3241588 SERP2535 Staphylococcus epidermidis RP62A hypothetical protein YP_190076.1 2591830 R 176279 CDS YP_190077.1 57865905 3241589 complement(2592839..2594122) 1 NC_002976.3 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2594122 purA 3241589 purA Staphylococcus epidermidis RP62A adenylosuccinate synthetase YP_190077.1 2592839 R 176279 CDS YP_190078.1 57865906 3241590 complement(2594401..2595801) 1 NC_002976.3 identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 2595801 dnaB 3241590 dnaB Staphylococcus epidermidis RP62A replicative DNA helicase YP_190078.1 2594401 R 176279 CDS YP_190079.1 57865907 3241591 complement(2595972..2596418) 1 NC_002976.3 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2596418 rplI 3241591 rplI Staphylococcus epidermidis RP62A 50S ribosomal protein L9 YP_190079.1 2595972 R 176279 CDS YP_190080.1 57865908 3241592 complement(2596415..2598382) 1 NC_002976.3 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 2598382 3241592 SERP2539 Staphylococcus epidermidis RP62A DHH family protein YP_190080.1 2596415 R 176279 CDS YP_190081.1 57865909 3241593 complement(2598411..2599337) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0014; hypothetical protein 2599337 3241593 SERP2540 Staphylococcus epidermidis RP62A hypothetical protein YP_190081.1 2598411 R 176279 CDS YP_190082.1 57865910 3242312 complement(2599586..2600554) 1 NC_002976.3 homoserine O-acetyltransferase 2600554 3242312 SERP2541 Staphylococcus epidermidis RP62A homoserine O-acetyltransferase YP_190082.1 2599586 R 176279 CDS YP_190083.1 57865911 3242313 complement(2600843..2601172) 1 NC_002976.3 identified by similarity to OMNI:NTL01SA0012; hypothetical protein 2601172 3242313 SERP2542 Staphylococcus epidermidis RP62A hypothetical protein YP_190083.1 2600843 R 176279 CDS YP_190084.1 57865912 3242314 complement(2601169..2601861) 1 NC_002976.3 identified by match to protein family HMM PF03591; azlC protein 2601861 3242314 SERP2543 Staphylococcus epidermidis RP62A azlC protein YP_190084.1 2601169 R 176279 CDS YP_190085.1 57865922 3242527 2602224..2603228 1 NC_002976.3 identified by similarity to OMNI:SA2003; match to protein family HMM PF03372; beta-hemolysin 2603228 hlb 3242527 hlb Staphylococcus epidermidis RP62A beta-hemolysin YP_190085.1 2602224 D 176279 CDS YP_190086.1 57865923 3242528 complement(2603756..2605042) 1 NC_002976.3 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2605042 serS 3242528 serS Staphylococcus epidermidis RP62A seryl-tRNA synthetase YP_190086.1 2603756 R 176279 CDS YP_190087.1 57865924 3242529 2605087..2605179 1 NC_002976.3 hypothetical protein 2605179 3242529 SERP2546 Staphylococcus epidermidis RP62A hypothetical protein YP_190087.1 2605087 D 176279 CDS YP_190088.1 57865925 3242530 2605887..2606702 1 NC_002976.3 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; hypothetical protein 2606702 3242530 SERP2547 Staphylococcus epidermidis RP62A hypothetical protein YP_190088.1 2605887 D 176279 CDS YP_190089.1 57865926 3242531 complement(2607094..2609775) 1 NC_002976.3 identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase, A subunit 2609775 gyrA 3242531 gyrA Staphylococcus epidermidis RP62A DNA gyrase, A subunit YP_190089.1 2607094 R 176279 CDS YP_190090.1 57865927 3242532 complement(2609812..2611743) 1 NC_002976.3 identified by similarity to SP:P20832; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit 2611743 gyrB 3242532 gyrB Staphylococcus epidermidis RP62A DNA gyrase, B subunit YP_190090.1 2609812 R 176279 CDS YP_190091.1 57865928 3242533 complement(2611754..2612869) 1 NC_002976.3 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2612869 recF 3242533 recF Staphylococcus epidermidis RP62A recombination protein F YP_190091.1 2611754 R 176279 CDS YP_190092.1 57865929 3242534 complement(2612866..2613102) 1 NC_002976.3 identified by similarity to OMNI:SA0003; hypothetical protein 2613102 3242534 SERP2551 Staphylococcus epidermidis RP62A hypothetical protein YP_190092.1 2612866 R 176279 CDS YP_190093.1 57865930 3242587 complement(2613533..2614666) 1 NC_002976.3 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2614666 dnaN 3242587 dnaN Staphylococcus epidermidis RP62A DNA polymerase III subunit beta YP_190093.1 2613533 R 176279 CDS YP_190094.1 57865939 3240513 complement(2614976..2616331) 1 NC_002976.3 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 2616331 dnaA 3240513 dnaA Staphylococcus epidermidis RP62A chromosome replication initiator DnaA YP_190094.1 2614976 R 176279 CDS YP_187530.1 57854753 3239133 78..815 1 NC_006663.1 identified by similarity to GP:7532833; match to protein family HMM PF04394; replication-associated protein 815 3239133 SEA0001 Staphylococcus epidermidis RP62A replication-associated protein YP_187530.1 78 D 176279 CDS YP_187531.1 57854754 3239134 complement(988..1632) 1 NC_006663.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; truncated IS431mec-like transposase 1632 3239134 SEA0002 Staphylococcus epidermidis RP62A truncated IS431mec-like transposase YP_187531.1 988 R 176279 CDS YP_187532.1 57854755 3239161 complement(1699..2544) 1 NC_006663.1 identified by similarity to SP:P00807; match to protein family HMM PF00144; beta-lactamase 2544 blaZ-2 3239161 blaZ-2 Staphylococcus epidermidis RP62A beta-lactamase YP_187532.1 1699 R 176279 CDS YP_187533.1 57854756 3239156 2651..4408 1 NC_006663.1 identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; regulatory protein BlaR1 4408 blaR1-2 3239156 blaR1-2 Staphylococcus epidermidis RP62A regulatory protein BlaR1 YP_187533.1 2651 D 176279 CDS YP_187534.1 57854757 3239164 4425..4778 1 NC_006663.1 identified by similarity to EGAD:13370; match to protein family HMM PF03965; penicillinase repressor 4778 blaI-2 3239164 blaI-2 Staphylococcus epidermidis RP62A penicillinase repressor YP_187534.1 4425 D 176279 CDS YP_187535.1 57854758 3239153 5042..5620 1 NC_006663.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase family site-specific recombinase 5620 3239153 SEA0006 Staphylococcus epidermidis RP62A resolvase family site-specific recombinase YP_187535.1 5042 D 176279 CDS YP_187536.1 57854759 3239163 5952..6095 1 NC_006663.1 hypothetical protein 6095 3239163 SEA0007 Staphylococcus epidermidis RP62A hypothetical protein YP_187536.1 5952 D 176279 CDS YP_187537.1 57854760 3239135 6361..7035 1 NC_006663.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 7035 3239135 SEA0008 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_187537.1 6361 D 176279 CDS YP_187538.1 57854761 3239151 complement(7077..7412) 1 NC_006663.1 transcriptional regulator, putative 7412 3239151 SEA0009 Staphylococcus epidermidis RP62A transcriptional regulator, putative YP_187538.1 7077 R 176279 CDS YP_187539.1 57854762 3239150 complement(7688..8482) 1 NC_006663.1 identified by similarity to EGAD:5713; match to protein family HMM PF01636; aminoglycoside 3'-phosphotransferase 8482 aphA 3239150 aphA Staphylococcus epidermidis RP62A aminoglycoside 3'-phosphotransferase YP_187539.1 7688 R 176279 CDS YP_187540.1 57854763 3239149 complement(8575..9117) 1 NC_006663.1 identified by similarity to GP:12957030; match to protein family HMM PF00583; streptothricin acetyltransferase 9117 3239149 SEA0011 Staphylococcus epidermidis RP62A streptothricin acetyltransferase YP_187540.1 8575 R 176279 CDS YP_187541.1 57854764 3239148 complement(9114..9953) 1 NC_006663.1 identified by similarity to GP:12957029; match to protein family HMM PF04439; aminoglycoside 6-adenylyltransferase 9953 aadE 3239148 aadE Staphylococcus epidermidis RP62A aminoglycoside 6-adenylyltransferase YP_187541.1 9114 R 176279 CDS YP_187542.1 57854765 3239146 complement(9967..10080) 1 NC_006663.1 hypothetical protein 10080 3239146 SEA0013 Staphylococcus epidermidis RP62A hypothetical protein YP_187542.1 9967 R 176279 CDS YP_187543.1 57854766 3239145 complement(10055..10789) 1 NC_006663.1 UbiE/COQ5 family methlytransferase 10789 3239145 SEA0014 Staphylococcus epidermidis RP62A UbiE/COQ5 family methlytransferase YP_187543.1 10055 R 176279 CDS YP_187544.1 57854767 3239144 complement(10770..11639) 1 NC_006663.1 identified by similarity to GP:12957027; match to protein family HMM PF01909; hypothetical protein 11639 3239144 SEA0015 Staphylococcus epidermidis RP62A hypothetical protein YP_187544.1 10770 R 176279 CDS YP_187545.1 57854768 3239143 complement(12009..12659) 1 NC_006663.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 12659 3239143 SEA0016 Staphylococcus epidermidis RP62A TetR family transcriptional regulator YP_187545.1 12009 R 176279 CDS YP_187546.1 57854769 3239142 complement(12669..13799) 1 NC_006663.1 identified by similarity to OMNI:NTL01LL0262; ABC transporter, permease protein 13799 3239142 SEA0017 Staphylococcus epidermidis RP62A ABC transporter, permease protein YP_187546.1 12669 R 176279 CDS YP_187547.1 57854770 3239141 complement(13801..14505) 1 NC_006663.1 identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein 14505 3239141 SEA0018 Staphylococcus epidermidis RP62A ABC transporter, ATP-binding protein YP_187547.1 13801 R 176279 CDS YP_187548.1 57854771 3239140 complement(14756..15649) 1 NC_006663.1 identified by similarity to GP:3676414; hypothetical protein 15649 3239140 SEA0019 Staphylococcus epidermidis RP62A hypothetical protein YP_187548.1 14756 R 176279 CDS YP_187549.1 57854772 3239139 15693..16367 1 NC_006663.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 16367 3239139 SEA0020 Staphylococcus epidermidis RP62A IS431mec-like transposase YP_187549.1 15693 D 176279 CDS YP_187550.1 57854773 3239138 16413..17039 1 NC_006663.1 identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; truncated IS431mec-like transposase 17039 3239138 SEA0021 Staphylococcus epidermidis RP62A truncated IS431mec-like transposase YP_187550.1 16413 D 176279 CDS YP_187551.1 57854774 3239137 17239..17883 1 NC_006663.1 identified by match to protein family HMM PF01051; truncated replication protein 17883 3239137 SEA0022 Staphylococcus epidermidis RP62A truncated replication protein YP_187551.1 17239 D 176279 CDS YP_187552.1 57854775 3239136 complement(19178..19591) 1 NC_006663.1 identified by match to protein family HMM PF00582; universal stress protein 19591 3239136 SEA0023 Staphylococcus epidermidis RP62A universal stress protein YP_187552.1 19178 R 176279 CDS YP_187553.1 57854776 3239162 complement(19605..21056) 1 NC_006663.1 identified by match to protein family HMM PF00916; sulfate permease family protein 21056 3239162 SEA0024 Staphylococcus epidermidis RP62A sulfate permease family protein YP_187553.1 19605 R 176279 CDS YP_187554.1 57854745 3239160 21170..21712 1 NC_006663.1 identified by similarity to GP:14475518; match to protein family HMM PF00239; resolvase, putative 21712 3239160 SEA0025 Staphylococcus epidermidis RP62A resolvase, putative YP_187554.1 21170 D 176279 CDS YP_187555.1 57854746 3239159 complement(21798..22031) 1 NC_006663.1 hypothetical protein 22031 3239159 SEA0026 Staphylococcus epidermidis RP62A hypothetical protein YP_187555.1 21798 R 176279 CDS YP_187556.1 57854747 3239158 22328..22723 1 NC_006663.1 identified by match to protein family HMM PF05713; mobilization protein 22723 3239158 SEA0027 Staphylococcus epidermidis RP62A mobilization protein YP_187556.1 22328 D 176279 CDS YP_187557.1 57854748 3239157 22705..22905 1 NC_006663.1 hypothetical protein 22905 3239157 SEA0028 Staphylococcus epidermidis RP62A hypothetical protein YP_187557.1 22705 D 176279 CDS YP_187558.1 57854749 3239155 22883..23899 1 NC_006663.1 identified by similarity to EGAD:5979; match to protein family HMM PF03432; rlx protein, putative 23899 3239155 SEA0029 Staphylococcus epidermidis RP62A rlx protein, putative YP_187558.1 22883 D 176279 CDS YP_187559.1 57854750 3239152 23601..24407 1 NC_006663.1 mobilization protein 24407 3239152 SEA0030 Staphylococcus epidermidis RP62A mobilization protein YP_187559.1 23601 D 176279 CDS YP_187560.1 57854751 3239147 24376..24567 1 NC_006663.1 hypothetical protein 24567 3239147 SEA0031 Staphylococcus epidermidis RP62A hypothetical protein YP_187560.1 24376 D 176279 CDS YP_187561.1 57854752 3239132 complement(26046..27080) 1 NC_006663.1 identified by similarity to EGAD:40155; replication-associated protein RepA 27080 repA 3239132 repA Staphylococcus epidermidis RP62A replication-associated protein RepA YP_187561.1 26046 R 176279 CDS