-- dump date 20140620_075845 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 176279000001 SEQ_END SEQ_END NC_002976.3 2616530 2616530 DR NC_002976.3; contig end 2616530..2616530 Staphylococcus epidermidis RP62A 176279000002 SEQ_END SEQ_END NC_006663.1 27310 27310 DR NC_006663.1; contig end 27310..27310 Staphylococcus epidermidis RP62A YP_187601.1 CDS rpmH NC_002976.3 540 677 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 540..677 Staphylococcus epidermidis RP62A 3240514 YP_187602.1 CDS rnpA NC_002976.3 836 1183 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 836..1183 Staphylococcus epidermidis RP62A 3240515 YP_187603.1 CDS trmE NC_002976.3 1329 2708 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1329..2708 Staphylococcus epidermidis RP62A 3240516 YP_187604.1 CDS gidA NC_002976.3 2781 4658 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2781..4658 Staphylococcus epidermidis RP62A 3240517 YP_187605.1 CDS gidB NC_002976.3 4658 5377 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4658..5377 Staphylococcus epidermidis RP62A 3240518 YP_187606.1 CDS SERP0006 NC_002976.3 5421 6260 D identified by similarity to OMNI:SA2735; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partioning protein 5421..6260 Staphylococcus epidermidis RP62A 3240519 YP_187607.1 CDS SERP0007 NC_002976.3 6313 6459 R hypothetical protein complement(6313..6459) Staphylococcus epidermidis RP62A 3240510 YP_187608.1 CDS SERP0008 NC_002976.3 6522 6683 D hypothetical protein 6522..6683 Staphylococcus epidermidis RP62A 3240511 YP_187609.1 CDS SERP0009 NC_002976.3 6661 7020 D hypothetical protein 6661..7020 Staphylococcus epidermidis RP62A 3240512 YP_187610.1 CDS SERP0010 NC_002976.3 7036 7431 D hypothetical protein 7036..7431 Staphylococcus epidermidis RP62A 3240860 YP_187611.1 CDS SERP0011 NC_002976.3 7397 7936 D transcriptional regulator 7397..7936 Staphylococcus epidermidis RP62A 3240861 YP_187612.1 CDS SERP0012 NC_002976.3 8156 8725 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 8156..8725 Staphylococcus epidermidis RP62A 3240862 YP_187613.1 CDS SERP0013 NC_002976.3 8913 9542 R identified by similarity to OMNI:NTL01SA0199; hypothetical protein complement(8913..9542) Staphylococcus epidermidis RP62A 3240863 YP_187614.1 CDS SERP0014 NC_002976.3 9780 10898 D identified by similarity to GP:14245964; RND efflux transporter 9780..10898 Staphylococcus epidermidis RP62A 3240864 YP_187615.1 CDS SERP0015 NC_002976.3 10895 11581 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 10895..11581 Staphylococcus epidermidis RP62A 3242378 YP_187616.1 CDS SERP0016 NC_002976.3 11574 12770 D identified by match to protein family HMM PF02687; ABC transporter permease 11574..12770 Staphylococcus epidermidis RP62A 3242379 YP_187617.1 CDS SERP0017 NC_002976.3 12806 12898 D hypothetical protein 12806..12898 Staphylococcus epidermidis RP62A 3242380 YP_187618.1 CDS SERP0018 NC_002976.3 13768 15813 D identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase 13768..15813 Staphylococcus epidermidis RP62A 3242381 YP_187619.1 CDS SERP0019 NC_002976.3 15885 16076 R identified by similarity to OMNI:SA2726; hypothetical protein complement(15885..16076) Staphylococcus epidermidis RP62A 3242382 YP_187620.1 CDS SERP0020 NC_002976.3 16121 18001 R identified by similarity to OMNI:NTL01BH0754; match to protein family HMM PF02687; ABC transporter permease complement(16121..18001) Staphylococcus epidermidis RP62A 3242383 YP_187621.1 CDS SERP0021 NC_002976.3 17991 18749 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(17991..18749) Staphylococcus epidermidis RP62A 3242384 YP_187622.1 CDS SERP0022 NC_002976.3 19043 19423 D hypothetical protein 19043..19423 Staphylococcus epidermidis RP62A 3242385 YP_187623.1 CDS SERP0023 NC_002976.3 19519 19659 R hypothetical protein complement(19519..19659) Staphylococcus epidermidis RP62A 3242386 YP_187624.1 CDS SERP0024 NC_002976.3 20149 20727 D identified by match to protein family HMM PF00461; signal peptidase I 20149..20727 Staphylococcus epidermidis RP62A 3242664 YP_187625.1 CDS SERP0025 NC_002976.3 20789 22153 R identified by match to protein family HMM PF00083; major facilitator family transporter complement(20789..22153) Staphylococcus epidermidis RP62A 3242488 YP_187626.1 CDS SERP0026 NC_002976.3 23557 23814 D identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; sdrF protein, truncation 23557..23814 Staphylococcus epidermidis RP62A 3242489 YP_187627.1 CDS SERP0027 NC_002976.3 23740 23994 R ABC transporter ATP-binding protein complement(23740..23994) Staphylococcus epidermidis RP62A 3242490 YP_187628.1 CDS SERP0028 NC_002976.3 24022 24756 R identified by similarity to OMNI:SA0421; hypothetical protein complement(24022..24756) Staphylococcus epidermidis RP62A 3242491 YP_187629.1 CDS SERP0029 NC_002976.3 24753 24956 R identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator complement(24753..24956) Staphylococcus epidermidis RP62A 3242492 YP_187630.1 CDS SERP0030 NC_002976.3 25242 25442 D identified by similarity to OMNI:NTL01SA2428; hypothetical protein 25242..25442 Staphylococcus epidermidis RP62A 3242493 YP_187631.1 CDS SERP0031 NC_002976.3 25560 25652 R hypothetical protein complement(25560..25652) Staphylococcus epidermidis RP62A 3242494 YP_187632.1 CDS SERP0032 NC_002976.3 26288 27472 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 26288..27472 Staphylococcus epidermidis RP62A 3242978 YP_187633.1 CDS SERP0033 NC_002976.3 27690 28433 R identified by similarity to OMNI:SA0427; match to protein family HMM PF04199; cyclase complement(27690..28433) Staphylococcus epidermidis RP62A 3242979 YP_187634.1 CDS metE NC_002976.3 28455 30701 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(28455..30701) Staphylococcus epidermidis RP62A 3240867 YP_187635.1 CDS SERP0035 NC_002976.3 30698 32536 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein complement(30698..32536) Staphylococcus epidermidis RP62A 3240868 YP_187636.1 CDS SERP0036 NC_002976.3 32490 33665 R identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein complement(32490..33665) Staphylococcus epidermidis RP62A 3240869 YP_187637.1 CDS SERP0037 NC_002976.3 33662 34765 R identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein complement(33662..34765) Staphylococcus epidermidis RP62A 3242377 YP_187638.1 CDS SERP0038 NC_002976.3 35494 36336 D identified by similarity to EGAD:13122; match to protein family HMM PF02195; match to protein family HMM TIGR00180; spoOJ protein 35494..36336 Staphylococcus epidermidis RP62A 3242655 YP_187639.1 CDS SERP0039 NC_002976.3 36497 37372 D identified by similarity to OMNI:SA0433; match to protein family HMM PF00924; hypothetical protein 36497..37372 Staphylococcus epidermidis RP62A 3242656 YP_187640.1 CDS SERP0040 NC_002976.3 37393 37596 D identified by similarity to OMNI:NTL01SA0362; hypothetical protein 37393..37596 Staphylococcus epidermidis RP62A 3242657 YP_187641.1 CDS SERP0041 NC_002976.3 37608 38705 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 37608..38705 Staphylococcus epidermidis RP62A 3242658 YP_187642.1 CDS SERP0042 NC_002976.3 38938 39129 R identified by similarity to OMNI:NTL01SA0364; hypothetical protein complement(38938..39129) Staphylococcus epidermidis RP62A 3242659 YP_187643.1 CDS SERP0043 NC_002976.3 39203 40012 R lysozyme domain-containing protein complement(39203..40012) Staphylococcus epidermidis RP62A 3242660 YP_187644.1 CDS rpsF NC_002976.3 40397 40693 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 40397..40693 Staphylococcus epidermidis RP62A 3242661 YP_187645.1 CDS ssb NC_002976.3 40716 41225 D identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 40716..41225 Staphylococcus epidermidis RP62A 3242662 YP_187646.1 CDS rpsR NC_002976.3 41270 41512 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 41270..41512 Staphylococcus epidermidis RP62A 3242663 YP_187647.1 CDS SERP0048 NC_002976.3 41982 42242 R hypothetical protein complement(41982..42242) Staphylococcus epidermidis RP62A 3242496 YP_187648.1 CDS SERP0049 NC_002976.3 42464 42718 D identified by similarity to OMNI:SA0446; match to protein family HMM PF04226; hypothetical protein 42464..42718 Staphylococcus epidermidis RP62A 3242497 YP_187649.1 CDS SERP0050 NC_002976.3 42835 42930 D hypothetical protein 42835..42930 Staphylococcus epidermidis RP62A 3240522 YP_187650.1 CDS SERP0051 NC_002976.3 43190 43822 D identified by match to protein family HMM PF01810; amino acid transporter LysE 43190..43822 Staphylococcus epidermidis RP62A 3240523 YP_187651.1 CDS SERP0052 NC_002976.3 43843 44433 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 43843..44433 Staphylococcus epidermidis RP62A 3240524 YP_187652.1 CDS SERP0054 NC_002976.3 44849 45079 R identified by similarity to OMNI:NTL01SA0377; hypothetical protein complement(44849..45079) Staphylococcus epidermidis RP62A 3240526 YP_187653.1 CDS SERP0055 NC_002976.3 45180 45278 D hypothetical protein 45180..45278 Staphylococcus epidermidis RP62A 3240527 YP_187654.1 CDS SERP0056 NC_002976.3 45300 45425 D hypothetical protein 45300..45425 Staphylococcus epidermidis RP62A 3240528 YP_187655.1 CDS SERP0057 NC_002976.3 45446 46069 R identified by similarity to OMNI:SA0449; hypothetical protein complement(45446..46069) Staphylococcus epidermidis RP62A 3240529 YP_187656.1 CDS SERP0058 NC_002976.3 46212 46340 D hypothetical protein 46212..46340 Staphylococcus epidermidis RP62A 3240530 YP_187657.1 CDS ahpF NC_002976.3 46330 47853 R identified by similarity to EGAD:30995; match to protein family HMM PF00070; alkyl hydroperoxide reductase complement(46330..47853) Staphylococcus epidermidis RP62A 3242974 YP_187658.1 CDS ahpC NC_002976.3 47868 48437 R identified by similarity to EGAD:37649; match to protein family HMM PF00578; alkyl hydroperoxide reductase complement(47868..48437) Staphylococcus epidermidis RP62A 3242975 YP_187659.1 CDS SERP0061 NC_002976.3 48882 49661 R identified by match to protein family HMM PF01689; 2-keto-4-pentenoate hydratase complement(48882..49661) Staphylococcus epidermidis RP62A 3242976 YP_187660.1 CDS SERP0062 NC_002976.3 49802 50557 D identified by similarity to EGAD:18715; match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase 49802..50557 Staphylococcus epidermidis RP62A 3242977 YP_187661.1 CDS SERP0063 NC_002976.3 50679 52067 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(50679..52067) Staphylococcus epidermidis RP62A 3241649 YP_187662.1 CDS SERP0064 NC_002976.3 52376 53278 R identified by similarity to OMNI:SA0455; hypothetical protein complement(52376..53278) Staphylococcus epidermidis RP62A 3241650 YP_187663.1 CDS SERP0065 NC_002976.3 53404 54069 R identified by similarity to OMNI:SA0456; hypothetical protein complement(53404..54069) Staphylococcus epidermidis RP62A 3241651 YP_187664.1 CDS SERP0066 NC_002976.3 54197 54604 R identified by similarity to OMNI:SA0457; hypothetical protein complement(54197..54604) Staphylococcus epidermidis RP62A 3241652 YP_187665.1 CDS xpt NC_002976.3 55201 55779 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 55201..55779 Staphylococcus epidermidis RP62A 3241653 YP_187666.1 CDS pbuX NC_002976.3 55779 57047 D identified by similarity to EGAD:30678; match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 55779..57047 Staphylococcus epidermidis RP62A 3241654 YP_187667.1 CDS guaB NC_002976.3 57085 58551 D identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF01574; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 57085..58551 Staphylococcus epidermidis RP62A 3241655 YP_187668.1 CDS guaA NC_002976.3 58718 60259 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 58718..60259 Staphylococcus epidermidis RP62A 3241656 YP_187669.1 CDS SERP0071 NC_002976.3 60500 61405 R identified by similarity to OMNI:SA0440; hypothetical protein complement(60500..61405) Staphylococcus epidermidis RP62A 3242673 YP_187670.1 CDS SERP0073 NC_002976.3 62664 63218 R identified by similarity to GP:14247774; hypothetical protein complement(62664..63218) Staphylococcus epidermidis RP62A 3242562 YP_187671.1 CDS SERP0074 NC_002976.3 63328 63945 R hypothetical protein complement(63328..63945) Staphylococcus epidermidis RP62A 3242563 YP_187672.1 CDS SERP0075 NC_002976.3 64144 64260 R hypothetical protein complement(64144..64260) Staphylococcus epidermidis RP62A 3242564 YP_187673.1 CDS SERP0076 NC_002976.3 64836 64967 D identified by similarity to OMNI:SA0071; hypothetical protein 64836..64967 Staphylococcus epidermidis RP62A 3242565 YP_187674.1 CDS SERP0077 NC_002976.3 64980 65096 R identified by similarity to GP:8918792; transposase, truncation complement(64980..65096) Staphylococcus epidermidis RP62A 3242566 YP_187675.1 CDS pfoR NC_002976.3 65272 66300 D identified by similarity to EGAD:33437; perfringolysin O regulator protein 65272..66300 Staphylococcus epidermidis RP62A 3242567 YP_187676.1 CDS SERP0079 NC_002976.3 66815 67198 D identified by similarity to OMNI:NTL03PA01359; match to protein family HMM PF00903; hypothetical protein 66815..67198 Staphylococcus epidermidis RP62A 3241767 YP_187677.1 CDS SERP0080 NC_002976.3 67369 68571 D identified by match to protein family HMM PF02492; cobalamin synthesis protein 67369..68571 Staphylococcus epidermidis RP62A 3241768 YP_187678.1 CDS SERP0081 NC_002976.3 68810 69073 R hypothetical protein complement(68810..69073) Staphylococcus epidermidis RP62A 3241769 YP_187679.1 CDS SERP0082 NC_002976.3 69325 69438 D hypothetical protein 69325..69438 Staphylococcus epidermidis RP62A 3241770 YP_187681.1 CDS nuoF NC_002976.3 70144 71640 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit 5 70144..71640 Staphylococcus epidermidis RP62A 3242418 YP_187682.1 CDS SERP0085 NC_002976.3 71658 74225 D identified by similarity to OMNI:NTL01SA0430; hypothetical protein 71658..74225 Staphylococcus epidermidis RP62A 3242419 YP_187683.1 CDS SERP0086 NC_002976.3 74236 74313 D hypothetical protein 74236..74313 Staphylococcus epidermidis RP62A 3242420 YP_187684.1 CDS SERP0087 NC_002976.3 74338 74706 D identified by similarity to OMNI:NTL01SA0431; hypothetical protein 74338..74706 Staphylococcus epidermidis RP62A 3242421 YP_187685.1 CDS SERP0088 NC_002976.3 74748 74996 R identified by similarity to OMNI:SA0497; hypothetical protein complement(74748..74996) Staphylococcus epidermidis RP62A 3242422 YP_187686.1 CDS SERP0089 NC_002976.3 75248 75919 D identified by match to protein family HMM PF01569; PAP2 family protein 75248..75919 Staphylococcus epidermidis RP62A 3240896 YP_187687.1 CDS SERP0090 NC_002976.3 76026 76754 D identified by similarity to EGAD:18058; carboxylesterase 76026..76754 Staphylococcus epidermidis RP62A 3240897 YP_187688.1 CDS SERP0091 NC_002976.3 76769 77011 D hypothetical protein 76769..77011 Staphylococcus epidermidis RP62A 3240898 YP_187689.1 CDS SERP0092 NC_002976.3 77156 78484 D identified by match to protein family HMM PF00209; sodium-dependent transporter 77156..78484 Staphylococcus epidermidis RP62A 3240899 YP_187690.1 CDS SERP0093 NC_002976.3 78663 79202 R identified by similarity to EGAD:162731; hypothetical protein complement(78663..79202) Staphylococcus epidermidis RP62A 3240900 YP_187691.1 CDS SERP0094 NC_002976.3 79505 80413 D identified by match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase family protein 79505..80413 Staphylococcus epidermidis RP62A 3240901 YP_187692.1 CDS SERP0095 NC_002976.3 80406 81551 D identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 80406..81551 Staphylococcus epidermidis RP62A 3240902 YP_187693.1 CDS SERP0096 NC_002976.3 81701 81805 D hypothetical protein 81701..81805 Staphylococcus epidermidis RP62A 3240903 YP_187694.1 CDS SERP0097 NC_002976.3 81798 82823 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 81798..82823 Staphylococcus epidermidis RP62A 3240538 YP_187695.1 CDS SERP0098 NC_002976.3 82826 83485 D identified by match to protein family HMM PF00528; ABC transporter permease 82826..83485 Staphylococcus epidermidis RP62A 3240539 YP_187696.1 CDS SERP0099 NC_002976.3 83529 84374 D identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 83529..84374 Staphylococcus epidermidis RP62A 3240540 YP_187697.1 CDS SERP0100 NC_002976.3 84899 85873 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 84899..85873 Staphylococcus epidermidis RP62A 3241005 YP_187698.1 CDS SERP0101 NC_002976.3 86000 87505 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(86000..87505) Staphylococcus epidermidis RP62A 3241006 YP_187699.1 CDS SERP0102 NC_002976.3 87880 88158 R identified by similarity to OMNI:NTL01SA0442; hypothetical protein complement(87880..88158) Staphylococcus epidermidis RP62A 3241007 YP_187700.1 CDS SERP0103 NC_002976.3 88346 88732 D identified by match to protein family HMM PF00293; MutT/nudix family protein 88346..88732 Staphylococcus epidermidis RP62A 3241008 YP_187701.1 CDS SERP0104 NC_002976.3 89012 89131 D hypothetical protein 89012..89131 Staphylococcus epidermidis RP62A 3241009 YP_187702.1 CDS SERP0105 NC_002976.3 89245 90030 R identified by similarity to OMNI:SA0511; hypothetical protein complement(89245..90030) Staphylococcus epidermidis RP62A 3242675 YP_187703.1 CDS SERP0106 NC_002976.3 90027 91139 R identified by similarity to OMNI:SA0512; hypothetical protein complement(90027..91139) Staphylococcus epidermidis RP62A 3242676 YP_187704.1 CDS SERP0107 NC_002976.3 91276 92157 R identified by similarity to EGAD:6257; match to protein family HMM PF00126; GltC family transcriptional regulator complement(91276..92157) Staphylococcus epidermidis RP62A 3242677 YP_187705.1 CDS gltD NC_002976.3 96862 98325 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 96862..98325 Staphylococcus epidermidis RP62A 3242679 YP_187706.1 CDS SERP0110 NC_002976.3 98558 99379 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(98558..99379) Staphylococcus epidermidis RP62A 3242680 YP_187707.1 CDS SERP0111 NC_002976.3 99494 100489 D identified by match to protein family HMM PF03601; hypothetical protein 99494..100489 Staphylococcus epidermidis RP62A 3242681 YP_187708.1 CDS SERP0112 NC_002976.3 100691 100816 D identified by similarity to OMNI:NTL01SA0452; hypothetical protein 100691..100816 Staphylococcus epidermidis RP62A 3241304 YP_187709.1 CDS SERP0113 NC_002976.3 101647 102177 D identified by match to protein family HMM PF00583; acetyltransferase 101647..102177 Staphylococcus epidermidis RP62A 3241305 YP_187710.1 CDS dnaX NC_002976.3 102244 103950 D identified by similarity to SP:P09122; match to protein family HMM PF00004; DNA polymerase III, gamma and tau subunits 102244..103950 Staphylococcus epidermidis RP62A 3241306 YP_187711.1 CDS SERP0115 NC_002976.3 104039 104356 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 104039..104356 Staphylococcus epidermidis RP62A 3241802 YP_187712.1 CDS recR NC_002976.3 104363 104959 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 104363..104959 Staphylococcus epidermidis RP62A 3241803 YP_187713.1 CDS SERP0117 NC_002976.3 105049 105141 D identified by similarity to OMNI:SA1097; hypothetical protein 105049..105141 Staphylococcus epidermidis RP62A 3241804 YP_187714.1 CDS SERP0118 NC_002976.3 111135 111668 D identified by match to protein family HMM PF00583; spermidine N1-acetyltransferase 111135..111668 Staphylococcus epidermidis RP62A 3241805 YP_187715.1 CDS SERP0119 NC_002976.3 111697 113034 D identified by match to protein family HMM PF01276; Orn/Lys/Arg decarboxylase 111697..113034 Staphylococcus epidermidis RP62A 3242980 YP_187716.1 CDS tmk NC_002976.3 113038 113649 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 113038..113649 Staphylococcus epidermidis RP62A 3242981 YP_187717.1 CDS SERP0121 NC_002976.3 113683 114012 D identified by similarity to OMNI:SA0525; hypothetical protein 113683..114012 Staphylococcus epidermidis RP62A 3242982 YP_187718.1 CDS SERP0122 NC_002976.3 114318 115244 D identified by similarity to EGAD:13071; DNA polymerase III, delta prime subunit 114318..115244 Staphylococcus epidermidis RP62A 3242983 YP_187719.1 CDS SERP0123 NC_002976.3 115246 116049 D identified by similarity to OMNI:SA0527; match to protein family HMM PF04468; hypothetical protein 115246..116049 Staphylococcus epidermidis RP62A 3241647 YP_187720.1 CDS SERP0124 NC_002976.3 116066 116413 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 116066..116413 Staphylococcus epidermidis RP62A 3241648 YP_187721.1 CDS SERP0125 NC_002976.3 116509 117234 D identified by similarity to OMNI:SA0529; hypothetical protein 116509..117234 Staphylococcus epidermidis RP62A 3242665 YP_187722.1 CDS SERP0126 NC_002976.3 117227 117475 D identified by similarity to OMNI:SA0530; match to protein family HMM PF01541; hypothetical protein 117227..117475 Staphylococcus epidermidis RP62A 3242666 YP_187723.1 CDS SERP0127 NC_002976.3 117477 118316 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole family methyltransferase 117477..118316 Staphylococcus epidermidis RP62A 3242667 YP_187724.1 CDS metS NC_002976.3 118526 120496 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 118526..120496 Staphylococcus epidermidis RP62A 3242668 YP_187725.1 CDS SERP0129 NC_002976.3 120524 121294 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family deoxyribonuclease 120524..121294 Staphylococcus epidermidis RP62A 3242669 YP_187726.1 CDS SERP0130 NC_002976.3 121501 122046 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-related protein 121501..122046 Staphylococcus epidermidis RP62A 3242670 YP_187727.1 CDS ksgA NC_002976.3 122047 122937 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 122047..122937 Staphylococcus epidermidis RP62A 3242671 YP_187728.1 CDS SERP0132 NC_002976.3 123037 123300 D identified by similarity to OMNI:SA0537; hypothetical protein 123037..123300 Staphylococcus epidermidis RP62A 3242672 YP_187729.1 CDS ipk NC_002976.3 123693 124541 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 123693..124541 Staphylococcus epidermidis RP62A 3242568 YP_187730.1 CDS purR NC_002976.3 124556 125380 D identified by similarity to EGAD:16043; match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 124556..125380 Staphylococcus epidermidis RP62A 3242569 YP_187731.1 CDS SERP0135 NC_002976.3 125402 125782 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 125402..125782 Staphylococcus epidermidis RP62A 3242570 YP_187732.1 CDS spoVG NC_002976.3 125842 126150 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 125842..126150 Staphylococcus epidermidis RP62A 3241762 YP_187733.1 CDS glmU NC_002976.3 126760 128115 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 126760..128115 Staphylococcus epidermidis RP62A 3241763 YP_187734.1 CDS prsA NC_002976.3 128259 129224 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 128259..129224 Staphylococcus epidermidis RP62A 3241764 YP_187735.1 CDS rplY NC_002976.3 129394 130053 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 129394..130053 Staphylococcus epidermidis RP62A 3241765 YP_187736.1 CDS pth NC_002976.3 130306 130878 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 130306..130878 Staphylococcus epidermidis RP62A 3241766 YP_187737.1 CDS mfd NC_002976.3 130875 134384 D identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor 130875..134384 Staphylococcus epidermidis RP62A 3242423 YP_187738.1 CDS SERP0142 NC_002976.3 134374 135915 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 134374..135915 Staphylococcus epidermidis RP62A 3242424 YP_187739.1 CDS SERP0143 NC_002976.3 135912 137102 D identified by match to protein family HMM PF00590; match to protein family HMM PF03819; tetrapyrrole methylase 135912..137102 Staphylococcus epidermidis RP62A 3242425 YP_187740.1 CDS SERP0144 NC_002976.3 137099 137362 D identified by match to protein family HMM PF01479; S4 domain-containing protein 137099..137362 Staphylococcus epidermidis RP62A 3242426 YP_187741.1 CDS SERP0145 NC_002976.3 137386 137787 D identified by match to protein family HMM PF04977; cell-division protein DivIC 137386..137787 Staphylococcus epidermidis RP62A 3242427 YP_187742.1 CDS SERP0146 NC_002976.3 137881 138282 D identified by similarity to SP:P05055; match to protein family HMM PF00575; hypothetical protein 137881..138282 Staphylococcus epidermidis RP62A 3242428 YP_187743.1 CDS SERP0147 NC_002976.3 138376 138474 D hypothetical protein 138376..138474 Staphylococcus epidermidis RP62A 3240894 YP_187744.1 CDS SERP0148 NC_002976.3 138560 139858 D identified by similarity to EGAD:18381; match to protein family HMM PF01171; MesJ/Ycf62 family protein 138560..139858 Staphylococcus epidermidis RP62A 3240895 YP_187745.1 CDS hpt NC_002976.3 139858 140397 D identified by similarity to EGAD:18056; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 139858..140397 Staphylococcus epidermidis RP62A 3240531 YP_187746.1 CDS SERP0150 NC_002976.3 140672 142774 D identified by similarity to EGAD:18839; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH 140672..142774 Staphylococcus epidermidis RP62A 3240532 YP_187747.1 CDS hslO NC_002976.3 143029 143910 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 143029..143910 Staphylococcus epidermidis RP62A 3240533 YP_187748.1 CDS cysK NC_002976.3 144247 145179 D identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase 144247..145179 Staphylococcus epidermidis RP62A 3240534 YP_187749.1 CDS folP NC_002976.3 145475 146293 D identified by similarity to EGAD:40403; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 145475..146293 Staphylococcus epidermidis RP62A 3240535 YP_187750.1 CDS folB NC_002976.3 146271 146636 D identified by similarity to SP:P56740; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 146271..146636 Staphylococcus epidermidis RP62A 3240536 YP_187751.1 CDS folK NC_002976.3 146637 147116 D identified by similarity to EGAD:18680; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 146637..147116 Staphylococcus epidermidis RP62A 3240537 YP_187752.1 CDS lysS NC_002976.3 147452 148939 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 147452..148939 Staphylococcus epidermidis RP62A 3241010 YP_187753.1 CDS SERP0157 NC_002976.3 160782 162146 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(160782..162146) Staphylococcus epidermidis RP62A 3241011 YP_187754.1 CDS SERP0158 NC_002976.3 162243 163130 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 162243..163130 Staphylococcus epidermidis RP62A 3241012 YP_187755.1 CDS SERP0159 NC_002976.3 163130 163690 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 163130..163690 Staphylococcus epidermidis RP62A 3241013 YP_187756.1 CDS SERP0160 NC_002976.3 164286 165299 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 164286..165299 Staphylococcus epidermidis RP62A 3241014 YP_187757.1 CDS nupC NC_002976.3 165575 166789 R identified by similarity to EGAD:30360; match to protein family HMM PF01773; nucleoside permease NupC complement(165575..166789) Staphylococcus epidermidis RP62A 3241015 YP_187758.1 CDS ctsR NC_002976.3 166946 167407 D identified by match to protein family HMM PF05848; CtsR family transcriptional regulator 166946..167407 Staphylococcus epidermidis RP62A 3242674 YP_187759.1 CDS SERP0163 NC_002976.3 167413 167991 D identified by match to protein family HMM PF02151; UvrB/UvrC domain-containing protein 167413..167991 Staphylococcus epidermidis RP62A 3242682 YP_187760.1 CDS SERP0164 NC_002976.3 167981 168988 D identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 167981..168988 Staphylococcus epidermidis RP62A 3241297 YP_187761.1 CDS clpC NC_002976.3 169002 171455 D identified by similarity to EGAD:18028; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpC 169002..171455 Staphylococcus epidermidis RP62A 3241298 YP_187762.1 CDS radA NC_002976.3 171946 173319 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 171946..173319 Staphylococcus epidermidis RP62A 3241299 YP_187763.1 CDS SERP0167 NC_002976.3 173355 174431 D identified by similarity to OMNI:SA0573; match to protein family HMM PF01850; match to protein family HMM PF01938; twitching motility protein PilT 173355..174431 Staphylococcus epidermidis RP62A 3241300 YP_187764.1 CDS gltX NC_002976.3 174830 176284 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 174830..176284 Staphylococcus epidermidis RP62A 3241301 YP_187765.1 CDS cysE NC_002976.3 176657 177298 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 176657..177298 Staphylococcus epidermidis RP62A 3241302 YP_187766.1 CDS cysS NC_002976.3 177282 178682 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 177282..178682 Staphylococcus epidermidis RP62A 3241303 YP_187767.1 CDS SERP0171 NC_002976.3 178675 179073 D identified by similarity to GP:14246298; hypothetical protein 178675..179073 Staphylococcus epidermidis RP62A 3241807 YP_187768.1 CDS SERP0172 NC_002976.3 179081 179830 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 179081..179830 Staphylococcus epidermidis RP62A 3241808 YP_187769.1 CDS SERP0173 NC_002976.3 179827 180354 D identified by similarity to OMNI:SA0579; hypothetical protein 179827..180354 Staphylococcus epidermidis RP62A 3241809 YP_187770.1 CDS SERP0174 NC_002976.3 180424 180999 D identified by similarity to EGAD:108360; match to protein family HMM PF04542; RNA polymerase sigma factor sigW 180424..180999 Staphylococcus epidermidis RP62A 3241810 YP_187771.1 CDS rpmG NC_002976.3 181123 181266 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 181123..181266 Staphylococcus epidermidis RP62A 3240442 YP_187772.1 CDS secE NC_002976.3 181329 181511 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 181329..181511 Staphylococcus epidermidis RP62A 3241811 YP_187773.1 CDS nusG NC_002976.3 181522 182070 D identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 181522..182070 Staphylococcus epidermidis RP62A 3241812 YP_187774.1 CDS rplK NC_002976.3 182402 182824 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 182402..182824 Staphylococcus epidermidis RP62A 3242984 YP_187775.1 CDS rplA NC_002976.3 183037 183732 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 183037..183732 Staphylococcus epidermidis RP62A 3242992 YP_187776.1 CDS rplJ NC_002976.3 184007 184507 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 184007..184507 Staphylococcus epidermidis RP62A 3242993 YP_187777.1 CDS rplL NC_002976.3 184545 184913 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 184545..184913 Staphylococcus epidermidis RP62A 3241171 YP_187778.1 CDS SERP0182 NC_002976.3 185105 185713 D identified by similarity to EGAD:35187; match to protein family HMM PF05175; hypothetical protein 185105..185713 Staphylococcus epidermidis RP62A 3241172 YP_187779.1 CDS rpoB NC_002976.3 185929 189480 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 185929..189480 Staphylococcus epidermidis RP62A 3241173 YP_187780.1 CDS rpoC NC_002976.3 189612 193235 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 189612..193235 Staphylococcus epidermidis RP62A 3241174 YP_187781.1 CDS SERP0185 NC_002976.3 193563 193823 D in Bacillus subtilis this non-essential protein associates with the ribosome; ribosomal protein L7Ae-like 193563..193823 Staphylococcus epidermidis RP62A 3241175 YP_187782.1 CDS rpsL NC_002976.3 193914 194327 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 193914..194327 Staphylococcus epidermidis RP62A 3241176 YP_187783.1 CDS rpsG NC_002976.3 194398 194868 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 194398..194868 Staphylococcus epidermidis RP62A 3241361 YP_187784.1 CDS fusA NC_002976.3 194988 197069 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 194988..197069 Staphylococcus epidermidis RP62A 3241362 YP_187785.1 CDS tuf NC_002976.3 197288 198472 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 197288..198472 Staphylococcus epidermidis RP62A 3241363 YP_187786.1 CDS SERP0190 NC_002976.3 198598 199767 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase complement(198598..199767) Staphylococcus epidermidis RP62A 3241364 YP_187787.1 CDS SERP0191 NC_002976.3 200341 200850 D identified by match to protein family HMM PF00583; acetyltransferase 200341..200850 Staphylococcus epidermidis RP62A 3241365 YP_187788.1 CDS SERP0192 NC_002976.3 201102 202052 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 201102..202052 Staphylococcus epidermidis RP62A 3241366 YP_187789.1 CDS SERP0193 NC_002976.3 202140 202349 R hypothetical protein complement(202140..202349) Staphylococcus epidermidis RP62A 3241367 YP_187790.1 CDS SERP0194 NC_002976.3 202608 203564 D identified by similarity to EGAD:99035; UDP-glucose 4-epimerase 202608..203564 Staphylococcus epidermidis RP62A 3242802 YP_187791.1 CDS ilvE NC_002976.3 204021 205097 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 204021..205097 Staphylococcus epidermidis RP62A 3242811 YP_187792.1 CDS ispD NC_002976.3 205369 206085 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 205369..206085 Staphylococcus epidermidis RP62A 3242812 YP_187793.1 CDS SERP0197 NC_002976.3 206078 207109 D identified by match to protein family HMM PF00107; alcohol dehydrogenase 206078..207109 Staphylococcus epidermidis RP62A 3242813 YP_187794.1 CDS SERP0198 NC_002976.3 207126 208820 D identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein 207126..208820 Staphylococcus epidermidis RP62A 3242814 YP_187795.1 CDS SERP0199 NC_002976.3 209189 209884 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 209189..209884 Staphylococcus epidermidis RP62A 3242815 YP_187796.1 CDS SERP0200 NC_002976.3 209974 211278 R identified by similarity to EGAD:45955; similarity to GP:12543558; hypothetical protein complement(209974..211278) Staphylococcus epidermidis RP62A 3242816 YP_187797.1 CDS fabG NC_002976.3 211327 212079 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(211327..212079) Staphylococcus epidermidis RP62A 3242817 YP_187798.1 CDS SERP0202 NC_002976.3 212435 213097 R identified by match to protein family HMM PF01712; deoxynucleoside kinase complement(212435..213097) Staphylococcus epidermidis RP62A 3241469 YP_187799.1 CDS SERP0203 NC_002976.3 213090 213707 R identified by match to protein family HMM PF01712; deoxynucleoside kinase complement(213090..213707) Staphylococcus epidermidis RP62A 3241470 YP_187800.1 CDS SERP0204 NC_002976.3 213774 214280 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 213774..214280 Staphylococcus epidermidis RP62A 3241806 YP_187801.1 CDS SERP0205 NC_002976.3 214448 215326 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 214448..215326 Staphylococcus epidermidis RP62A 3242985 YP_187802.1 CDS SERP0206 NC_002976.3 215331 215897 D identified by similarity to GP:10281002; match to protein family HMM PF03358; azoreductase 215331..215897 Staphylococcus epidermidis RP62A 3242986 YP_187803.1 CDS SERP0207 NC_002976.3 216458 219136 D Point mutation observed 38 residues upstream of the start, causing translation to begin at the Leu.; identified by similarity to GP:8101007; match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; sdrG protein 216458..219136 Staphylococcus epidermidis RP62A 3242987 YP_187804.1 CDS SERP0208 NC_002976.3 219501 221003 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(219501..221003) Staphylococcus epidermidis RP62A 3242988 YP_187805.1 CDS arsC-1 NC_002976.3 221374 221772 R catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase complement(221374..221772) Staphylococcus epidermidis RP62A 3242989 YP_187806.1 CDS SERP0210 NC_002976.3 221788 223080 R identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935; arsenical pump membrane protein complement(221788..223080) Staphylococcus epidermidis RP62A 3242990 YP_187807.1 CDS arsR-1 NC_002976.3 223077 223394 R identified by similarity to EGAD:10168; match to protein family HMM PF01022; arsenical resistance operon repressor complement(223077..223394) Staphylococcus epidermidis RP62A 3242991 YP_187808.1 CDS SERP0212 NC_002976.3 223538 224416 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase complement(223538..224416) Staphylococcus epidermidis RP62A 3241177 YP_187809.1 CDS SERP0213 NC_002976.3 224430 225095 R identified by similarity to OMNI:NTL01SA0544; match to protein family HMM PF02585; hypothetical protein complement(224430..225095) Staphylococcus epidermidis RP62A 3241178 YP_187810.1 CDS SERP0214 NC_002976.3 225111 225473 R identified by similarity to OMNI:NTL01SA0545; hypothetical protein complement(225111..225473) Staphylococcus epidermidis RP62A 3241179 YP_187811.1 CDS nagB NC_002976.3 225758 226489 D identified by similarity to EGAD:107403; match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 225758..226489 Staphylococcus epidermidis RP62A 3241180 YP_187812.1 CDS SERP0216 NC_002976.3 226611 227243 D identified by match to protein family HMM PF00215; hexulose-6-phosphate synthase 226611..227243 Staphylococcus epidermidis RP62A 3241357 YP_187813.1 CDS SERP0217 NC_002976.3 227245 227793 D identified by match to protein family HMM PF01380; SIS domain-containing protein 227245..227793 Staphylococcus epidermidis RP62A 3241358 YP_187814.1 CDS SERP0218 NC_002976.3 227914 228561 D identified by match to protein family HMM PF00702; HAD superfamily hydrolase 227914..228561 Staphylococcus epidermidis RP62A 3241359 YP_187815.1 CDS SERP0219 NC_002976.3 228679 230040 D identified by match to protein family HMM PF00501; long chain fatty acid CoA ligase 228679..230040 Staphylococcus epidermidis RP62A 3241360 YP_187816.1 CDS SERP0220 NC_002976.3 230043 231191 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 230043..231191 Staphylococcus epidermidis RP62A 3242803 YP_187817.1 CDS SERP0221 NC_002976.3 231157 231519 D identified by similarity to OMNI:SA0623; hypothetical protein 231157..231519 Staphylococcus epidermidis RP62A 3242804 YP_187818.1 CDS SERP0222 NC_002976.3 231523 231783 D identified by similarity to OMNI:SA0624; hypothetical protein 231523..231783 Staphylococcus epidermidis RP62A 3242805 YP_187819.1 CDS SERP0223 NC_002976.3 231998 233392 D identified by match to protein family HMM PF00083; major facilitator family transporter 231998..233392 Staphylococcus epidermidis RP62A 3242806 YP_187820.1 CDS SERP0224 NC_002976.3 233685 233864 R identified by similarity to OMNI:SA0625; hypothetical protein complement(233685..233864) Staphylococcus epidermidis RP62A 3242807 YP_187821.1 CDS SERP0225 NC_002976.3 234297 234452 D identified by similarity to GP:8918792; truncated IS1272 transposase 234297..234452 Staphylococcus epidermidis RP62A 3242808 YP_187822.1 CDS thiD-1 NC_002976.3 234682 235515 R identified by similarity to EGAD:21177; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(234682..235515) Staphylococcus epidermidis RP62A 3242809 YP_187823.1 CDS SERP0227 NC_002976.3 235619 236599 R identified by similarity to EGAD:17563; match to protein family HMM PF02275; penicillin V acylase complement(235619..236599) Staphylococcus epidermidis RP62A 3242810 YP_187824.1 CDS ung NC_002976.3 236766 237416 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 236766..237416 Staphylococcus epidermidis RP62A 3242818 YP_187825.1 CDS SERP0229 NC_002976.3 237426 237785 D identified by similarity to OMNI:SA0628; hypothetical protein 237426..237785 Staphylococcus epidermidis RP62A 3242819 YP_187826.1 CDS SERP0230 NC_002976.3 237807 238178 D identified by similarity to OMNI:SA0629; match to protein family HMM PF04241; hypothetical protein 237807..238178 Staphylococcus epidermidis RP62A 3242820 YP_187827.1 CDS SERP0231 NC_002976.3 238162 238254 R hypothetical protein complement(238162..238254) Staphylococcus epidermidis RP62A 3242821 YP_187828.1 CDS SERP0232 NC_002976.3 238294 239784 D identified by match to protein family HMM PF00324; amino acid permease 238294..239784 Staphylococcus epidermidis RP62A 3242822 YP_187829.1 CDS SERP0233 NC_002976.3 239945 240397 R identified by similarity to OMNI:SA0631; hypothetical protein complement(239945..240397) Staphylococcus epidermidis RP62A 3242823 YP_187830.1 CDS SERP0234 NC_002976.3 240410 241174 R hypothetical protein complement(240410..241174) Staphylococcus epidermidis RP62A 3241466 YP_187831.1 CDS SERP0235 NC_002976.3 241677 242426 R identified by similarity to OMNI:NTL01SA0564; heme peroxidase complement(241677..242426) Staphylococcus epidermidis RP62A 3241467 YP_187832.1 CDS eutD NC_002976.3 242597 243586 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 242597..243586 Staphylococcus epidermidis RP62A 3241468 YP_187833.1 CDS SERP0237 NC_002976.3 243586 244425 D identified by match to protein family HMM PF02539; match to protein family HMM PF03099; lipoate-protein ligase A 243586..244425 Staphylococcus epidermidis RP62A 3242301 YP_187834.1 CDS mvk NC_002976.3 245118 246038 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR00549; mevalonate kinase 245118..246038 Staphylococcus epidermidis RP62A 3242302 YP_187835.1 CDS mvaD NC_002976.3 246043 247026 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240; mevalonate diphosphate decarboxylase 246043..247026 Staphylococcus epidermidis RP62A 3242303 YP_187836.1 CDS SERP0240 NC_002976.3 247039 248115 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220; phosphomevalonate kinase 247039..248115 Staphylococcus epidermidis RP62A 3242304 YP_187837.1 CDS SERP0241 NC_002976.3 248326 248667 D identified by similarity to OMNI:SA0639; hypothetical protein 248326..248667 Staphylococcus epidermidis RP62A 3242305 YP_187838.1 CDS SERP0242 NC_002976.3 249056 250387 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase family protein complement(249056..250387) Staphylococcus epidermidis RP62A 3242306 YP_187839.1 CDS SERP0243 NC_002976.3 250392 250814 R identified by similarity to GP:14246363; hypothetical protein complement(250392..250814) Staphylococcus epidermidis RP62A 3242307 YP_187840.1 CDS SERP0244 NC_002976.3 250971 251909 D identified by match to protein family HMM PF00248; aldo/keto reductase 250971..251909 Staphylococcus epidermidis RP62A 3242308 YP_187841.1 CDS SERP0245 NC_002976.3 252370 255051 D identified by match to protein family HMM PF03176; transporter 252370..255051 Staphylococcus epidermidis RP62A 3242463 YP_187842.1 CDS SERP0246 NC_002976.3 255075 256019 D identified by match to protein family HMM PF04069; ABC transporter substrate-binding protein 255075..256019 Staphylococcus epidermidis RP62A 3242464 YP_187843.1 CDS SERP0247 NC_002976.3 256369 256938 D transcriptional regulator 256369..256938 Staphylococcus epidermidis RP62A 3242465 YP_187844.1 CDS SERP0248 NC_002976.3 256979 257083 R hypothetical protein complement(256979..257083) Staphylococcus epidermidis RP62A 3242466 YP_187845.1 CDS SERP0249 NC_002976.3 257149 257823 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 257149..257823 Staphylococcus epidermidis RP62A 3242467 YP_187846.1 CDS SERP0250 NC_002976.3 258272 258748 D identified by match to protein family HMM PF00583; acetyltransferase 258272..258748 Staphylococcus epidermidis RP62A 3242468 YP_187847.1 CDS SERP0251 NC_002976.3 258840 260138 D identified by match to protein family HMM PF01966; HD domain-containing protein 258840..260138 Staphylococcus epidermidis RP62A 3242469 YP_187848.1 CDS SERP0252 NC_002976.3 260186 260701 D identified by similarity to OMNI:NTL01SA0581; hypothetical protein 260186..260701 Staphylococcus epidermidis RP62A 3243012 YP_187849.1 CDS SERP0253 NC_002976.3 260788 261975 R identified by similarity to EGAD:165191; match to protein family HMM PF01969; hypothetical protein complement(260788..261975) Staphylococcus epidermidis RP62A 3243013 YP_187850.1 CDS SERP0254 NC_002976.3 261972 262748 R AIR carboxylase complement(261972..262748) Staphylococcus epidermidis RP62A 3241797 YP_187851.1 CDS SERP0255 NC_002976.3 262763 263590 R identified by similarity to EGAD:49939; match to protein family HMM TIGR00268; hypothetical protein complement(262763..263590) Staphylococcus epidermidis RP62A 3241798 YP_187852.1 CDS SERP0256 NC_002976.3 263610 264884 R hypothetical protein complement(263610..264884) Staphylococcus epidermidis RP62A 3241799 YP_187853.1 CDS SERP0257 NC_002976.3 265167 266189 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 265167..266189 Staphylococcus epidermidis RP62A 3241800 YP_187854.1 CDS SERP0258 NC_002976.3 266272 266664 D hypothetical protein 266272..266664 Staphylococcus epidermidis RP62A 3241801 YP_187855.1 CDS SERP0259 NC_002976.3 266777 266887 D hypothetical protein 266777..266887 Staphylococcus epidermidis RP62A 3241286 YP_187856.1 CDS SERP0260 NC_002976.3 267446 268459 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 267446..268459 Staphylococcus epidermidis RP62A 3241287 YP_187857.1 CDS SERP0261 NC_002976.3 268675 269130 D identified by similarity to OMNI:NTL01SA0583; hypothetical protein 268675..269130 Staphylococcus epidermidis RP62A 3241296 YP_187858.1 CDS argS NC_002976.3 269127 270788 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 269127..270788 Staphylococcus epidermidis RP62A 3241307 YP_187859.1 CDS SERP0263 NC_002976.3 271030 271665 D identified by match to protein family HMM PF00730; endonuclease III 271030..271665 Staphylococcus epidermidis RP62A 3241308 YP_187860.1 CDS SERP0264 NC_002976.3 271720 272472 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 271720..272472 Staphylococcus epidermidis RP62A 3241309 YP_187861.1 CDS SERP0265 NC_002976.3 272481 272732 D hypothetical protein 272481..272732 Staphylococcus epidermidis RP62A 3241310 YP_187862.1 CDS SERP0266 NC_002976.3 272919 273806 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 272919..273806 Staphylococcus epidermidis RP62A 3241311 YP_187863.1 CDS SERP0267 NC_002976.3 274083 275027 D identified by match to protein family HMM PF01032; iron ABC transporter permease 274083..275027 Staphylococcus epidermidis RP62A 3241312 YP_187864.1 CDS SERP0268 NC_002976.3 275086 275814 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 275086..275814 Staphylococcus epidermidis RP62A 3241313 YP_187865.1 CDS SERP0269 NC_002976.3 275792 276589 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 275792..276589 Staphylococcus epidermidis RP62A 3241151 YP_187866.1 CDS SERP0270 NC_002976.3 276794 277303 D identified by similarity to OMNI:SA0669; hypothetical protein 276794..277303 Staphylococcus epidermidis RP62A 3241152 YP_187867.1 CDS SERP0271 NC_002976.3 277340 277462 D hypothetical protein 277340..277462 Staphylococcus epidermidis RP62A 3241153 YP_187868.1 CDS SERP0272 NC_002976.3 277548 278267 D identified by similarity to OMNI:SA0670; hypothetical protein 277548..278267 Staphylococcus epidermidis RP62A 3241154 YP_187869.1 CDS SERP0273 NC_002976.3 278475 279251 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 278475..279251 Staphylococcus epidermidis RP62A 3241155 YP_187870.1 CDS sarA NC_002976.3 279424 279798 R identified by similarity to EGAD:42500; match to protein family HMM TIGR01889; accessory regulator A complement(279424..279798) Staphylococcus epidermidis RP62A 3241156 YP_187871.1 CDS SERP0275 NC_002976.3 280211 281164 R identified by similarity to GP:2879913; hypothetical protein complement(280211..281164) Staphylococcus epidermidis RP62A 3241157 YP_187872.1 CDS SERP0276 NC_002976.3 281490 282383 R identified by similarity to OMNI:NTL01SA0594; match to protein family HMM PF04657; hypothetical protein complement(281490..282383) Staphylococcus epidermidis RP62A 3241158 YP_187873.1 CDS SERP0277 NC_002976.3 282382 282486 D hypothetical protein 282382..282486 Staphylococcus epidermidis RP62A 3240662 YP_187874.1 CDS SERP0278 NC_002976.3 282518 282664 D hypothetical protein 282518..282664 Staphylococcus epidermidis RP62A 3240663 YP_187875.1 CDS SERP0279 NC_002976.3 282773 282997 R identified by similarity to OMNI:SA0676; hypothetical protein complement(282773..282997) Staphylococcus epidermidis RP62A 3240664 YP_187876.1 CDS SERP0280 NC_002976.3 283013 283219 R identified by similarity to OMNI:NTL01SA0596; hypothetical protein complement(283013..283219) Staphylococcus epidermidis RP62A 3240565 YP_187877.1 CDS SERP0281 NC_002976.3 283943 286345 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 283943..286345 Staphylococcus epidermidis RP62A 3240566 YP_187878.1 CDS SERP0282 NC_002976.3 286332 286757 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 286332..286757 Staphylococcus epidermidis RP62A 3240567 YP_187879.1 CDS SERP0283 NC_002976.3 286754 287098 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 286754..287098 Staphylococcus epidermidis RP62A 3241843 YP_187880.1 CDS SERP0284 NC_002976.3 287091 288590 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 287091..288590 Staphylococcus epidermidis RP62A 3241844 YP_187881.1 CDS SERP0285 NC_002976.3 288587 289069 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 288587..289069 Staphylococcus epidermidis RP62A 3241332 YP_187882.1 CDS SERP0286 NC_002976.3 289066 289368 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F 289066..289368 Staphylococcus epidermidis RP62A 3241333 YP_187883.1 CDS SERP0287 NC_002976.3 289343 289807 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 289343..289807 Staphylococcus epidermidis RP62A 3241334 YP_187884.1 CDS SERP0288 NC_002976.3 290114 290221 D hypothetical protein 290114..290221 Staphylococcus epidermidis RP62A 3241471 YP_187885.1 CDS SERP0289 NC_002976.3 290256 292295 D identified by match to protein family HMM PF00999; Na+/H+ antiporter 290256..292295 Staphylococcus epidermidis RP62A 3241472 YP_187886.1 CDS sitC NC_002976.3 293030 293959 R identified by similarity to GP:1617430; match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(293030..293959) Staphylococcus epidermidis RP62A 3241473 YP_187887.1 CDS sitB NC_002976.3 293956 294792 R identified by match to protein family HMM PF00950; ABC transporter permease complement(293956..294792) Staphylococcus epidermidis RP62A 3241474 YP_187888.1 CDS sitA NC_002976.3 294793 295539 R identified by similarity to GP:1617428; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(294793..295539) Staphylococcus epidermidis RP62A 3241475 YP_187889.1 CDS sirR NC_002976.3 295659 296303 D identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent repressor 295659..296303 Staphylococcus epidermidis RP62A 3241476 YP_187890.1 CDS SERP0294 NC_002976.3 296468 297214 R identified by similarity to OMNI:NTL01SA0611; hypothetical protein complement(296468..297214) Staphylococcus epidermidis RP62A 3242309 YP_187891.1 CDS tagA NC_002976.3 297389 298147 D identified by similarity to EGAD:19699; match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosamine transferase 297389..298147 Staphylococcus epidermidis RP62A 3242310 YP_187892.1 CDS SERP0296 NC_002976.3 298225 299019 R with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit complement(298225..299019) Staphylococcus epidermidis RP62A 3242311 YP_187893.1 CDS SERP0297 NC_002976.3 299351 300163 D identified by similarity to EGAD:30975; match to protein family HMM PF01061; tagG protein, teichoic acid ABC transporter protein 299351..300163 Staphylococcus epidermidis RP62A 3242459 YP_187894.1 CDS SERP0298 NC_002976.3 300486 301577 D identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein B 300486..301577 Staphylococcus epidermidis RP62A 3242460 YP_187895.1 CDS SERP0299 NC_002976.3 301577 302641 D identified by match to protein family HMM PF00535; teichoic acid biosynthesis protein X 301577..302641 Staphylococcus epidermidis RP62A 3242461 YP_187896.1 CDS tagD NC_002976.3 302776 303174 D identified by similarity to EGAD:16695; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase 302776..303174 Staphylococcus epidermidis RP62A 3242462 YP_187897.1 CDS SERP0301 NC_002976.3 303316 303426 D hypothetical protein 303316..303426 Staphylococcus epidermidis RP62A 3243014 YP_187898.1 CDS SERP0302 NC_002976.3 303515 303664 D hypothetical protein 303515..303664 Staphylococcus epidermidis RP62A 3243015 YP_187899.1 CDS abcA NC_002976.3 304158 305885 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 304158..305885 Staphylococcus epidermidis RP62A 3243016 YP_187900.1 CDS SERP0304 NC_002976.3 306171 307400 D identified by match to protein family HMM PF01773; nucleoside permease NupC 306171..307400 Staphylococcus epidermidis RP62A 3243017 YP_187901.1 CDS SERP0305 NC_002976.3 307937 308770 D identified by similarity to OMNI:NTL01SPL1683; match to protein family HMM PF02588; hypothetical protein 307937..308770 Staphylococcus epidermidis RP62A 3243018 YP_187902.1 CDS SERP0306 NC_002976.3 309129 309926 D identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 309129..309926 Staphylococcus epidermidis RP62A 3243019 YP_187903.1 CDS SERP0307 NC_002976.3 310246 310746 D identified by similarity to OMNI:SA0710; hypothetical protein 310246..310746 Staphylococcus epidermidis RP62A 3243020 YP_187904.1 CDS SERP0308 NC_002976.3 310971 312038 D identified by similarity to OMNI:NTL01SA0630; hypothetical protein 310971..312038 Staphylococcus epidermidis RP62A 3243021 YP_187905.1 CDS SERP0309 NC_002976.3 312317 313366 D lipase/esterase 312317..313366 Staphylococcus epidermidis RP62A 3240755 YP_187906.1 CDS SERP0310 NC_002976.3 313927 314433 R identified by match to protein family HMM PF00583; acetyltransferase complement(313927..314433) Staphylococcus epidermidis RP62A 3241790 YP_187907.1 CDS SERP0311 NC_002976.3 314542 315465 D identified by similarity to OMNI:SA0715; hypothetical protein 314542..315465 Staphylococcus epidermidis RP62A 3241791 YP_187908.1 CDS SERP0312 NC_002976.3 315484 316158 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 315484..316158 Staphylococcus epidermidis RP62A 3241792 YP_187909.1 CDS SERP0313 NC_002976.3 316151 317191 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 316151..317191 Staphylococcus epidermidis RP62A 3241793 YP_187910.1 CDS SERP0314 NC_002976.3 317337 318098 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 317337..318098 Staphylococcus epidermidis RP62A 3241794 YP_187911.1 CDS SERP0315 NC_002976.3 318088 319977 D identified by match to protein family HMM PF02687; ABC transporter permease 318088..319977 Staphylococcus epidermidis RP62A 3241795 YP_187912.1 CDS SERP0316 NC_002976.3 320499 321116 D identified by similarity to OMNI:SA0721; match to protein family HMM PF01865; hypothetical protein 320499..321116 Staphylococcus epidermidis RP62A 3241796 YP_187913.1 CDS SERP0317 NC_002976.3 321131 322141 D identified by match to protein family HMM PF01384; phosphate transporter family protein 321131..322141 Staphylococcus epidermidis RP62A 3241288 YP_187914.1 CDS SERP0318 NC_002976.3 322334 323134 R identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein complement(322334..323134) Staphylococcus epidermidis RP62A 3241289 YP_187915.1 CDS SERP0319 NC_002976.3 323545 324204 D identified by similarity to OMNI:SA0724; hypothetical protein 323545..324204 Staphylococcus epidermidis RP62A 3241290 YP_187916.1 CDS SERP0320 NC_002976.3 324467 326641 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 324467..326641 Staphylococcus epidermidis RP62A 3241291 YP_187917.1 CDS sarX NC_002976.3 326756 327115 D identified by match to protein family HMM TIGR01889; accessory regulator A-like protein 326756..327115 Staphylococcus epidermidis RP62A 3241292 YP_187918.1 CDS SERP0322 NC_002976.3 327368 328084 D identified by similarity to OMNI:SA0727; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 327368..328084 Staphylococcus epidermidis RP62A 3241293 YP_187919.1 CDS SERP0323 NC_002976.3 328084 328560 D identified by similarity to GP:13122144; hypothetical protein 328084..328560 Staphylococcus epidermidis RP62A 3241294 YP_187920.1 CDS scdA NC_002976.3 328812 329486 R involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA complement(328812..329486) Staphylococcus epidermidis RP62A 3241295 YP_187921.1 CDS SERP0325 NC_002976.3 329658 330803 D identified by match to protein family HMM PF00042; match to protein family HMM PF00970; flavohemoprotein 329658..330803 Staphylococcus epidermidis RP62A 3241314 YP_187922.1 CDS SERP0326 NC_002976.3 330790 331008 D hypothetical protein 330790..331008 Staphylococcus epidermidis RP62A 3241315 YP_187923.1 CDS SERP0327 NC_002976.3 331297 331890 D identified by similarity to OMNI:NTL01SA0647; match to protein family HMM PF04167; hypothetical protein 331297..331890 Staphylococcus epidermidis RP62A 3241316 YP_187924.1 CDS SERP0328 NC_002976.3 331971 332825 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 331971..332825 Staphylococcus epidermidis RP62A 3241317 YP_187925.1 CDS SERP0329 NC_002976.3 332883 334091 D identified by similarity to EGAD:6822; similarity to EGAD:7093; similarity to EGAD:19549; sugar efflux transporter 332883..334091 Staphylococcus epidermidis RP62A 3241318 YP_187926.1 CDS SERP0330 NC_002976.3 334098 334586 D identified by similarity to OMNI:SA0734; match to protein family HMM PF04306; hypothetical protein 334098..334586 Staphylococcus epidermidis RP62A 3241147 YP_187927.1 CDS SERP0331 NC_002976.3 334642 335331 R identified by similarity to OMNI:SA0735; hypothetical protein complement(334642..335331) Staphylococcus epidermidis RP62A 3241148 YP_187928.1 CDS SERP0332 NC_002976.3 335770 336192 D lipoprotein 335770..336192 Staphylococcus epidermidis RP62A 3241149 YP_187929.1 CDS SERP0333 NC_002976.3 336324 336620 D identified by similarity to OMNI:SA0738; hypothetical protein 336324..336620 Staphylococcus epidermidis RP62A 3241150 YP_187930.1 CDS SERP0334 NC_002976.3 336746 337294 D identified by match to protein family HMM PF00583; acetyltransferase 336746..337294 Staphylococcus epidermidis RP62A 3240654 YP_187931.1 CDS SERP0335 NC_002976.3 337593 338159 R identified by similarity to OMNI:SA0740; match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase complement(337593..338159) Staphylococcus epidermidis RP62A 3240655 YP_187932.1 CDS SERP0336 NC_002976.3 338170 338619 R identified by similarity to OMNI:NTL01SA0657; match to protein family HMM PF02639; hypothetical protein complement(338170..338619) Staphylococcus epidermidis RP62A 3240656 YP_187933.1 CDS SERP0337 NC_002976.3 338622 339302 R identified by similarity to OMNI:SA0742; hypothetical protein complement(338622..339302) Staphylococcus epidermidis RP62A 3240657 YP_187934.1 CDS SERP0338 NC_002976.3 339499 339963 D identified by similarity to OMNI:NTL01BH0402; hypothetical protein 339499..339963 Staphylococcus epidermidis RP62A 3240658 YP_187935.1 CDS uppP NC_002976.3 340246 341118 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(340246..341118) Staphylococcus epidermidis RP62A 3240659 YP_187936.1 CDS SERP0340 NC_002976.3 341329 342963 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 341329..342963 Staphylococcus epidermidis RP62A 3240660 YP_187937.1 CDS SERP0341 NC_002976.3 342960 344654 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 342960..344654 Staphylococcus epidermidis RP62A 3240661 YP_187938.1 CDS norR NC_002976.3 344895 345338 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(344895..345338) Staphylococcus epidermidis RP62A 3241845 YP_187939.1 CDS SERP0343 NC_002976.3 345338 345439 R hypothetical protein complement(345338..345439) Staphylococcus epidermidis RP62A 3241846 YP_187940.1 CDS SERP0344 NC_002976.3 345560 346486 D identified by match to protein family HMM PF02492; cobalamin synthesis/P47K family protein 345560..346486 Staphylococcus epidermidis RP62A 3241847 YP_187941.1 CDS SERP0345 NC_002976.3 346508 346801 D hypothetical protein 346508..346801 Staphylococcus epidermidis RP62A 3241848 YP_187942.1 CDS SERP0346 NC_002976.3 346794 346940 D hypothetical protein 346794..346940 Staphylococcus epidermidis RP62A 3242931 YP_187943.1 CDS mdh NC_002976.3 346930 347871 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 346930..347871 Staphylococcus epidermidis RP62A 3242932 YP_187944.1 CDS SERP0348 NC_002976.3 348005 349561 D identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 348005..349561 Staphylococcus epidermidis RP62A 3242933 YP_187945.1 CDS SERP0349 NC_002976.3 349758 351131 D identified by match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 349758..351131 Staphylococcus epidermidis RP62A 3241331 YP_187946.1 CDS SERP0350 NC_002976.3 351181 351450 R hypothetical protein complement(351181..351450) Staphylococcus epidermidis RP62A 3241339 YP_187947.1 CDS SERP0351 NC_002976.3 351447 352064 R identified by similarity to OMNI:NTL01SA0669; hypothetical protein complement(351447..352064) Staphylococcus epidermidis RP62A 3241340 YP_187948.1 CDS SERP0352 NC_002976.3 352059 352244 D hypothetical protein 352059..352244 Staphylococcus epidermidis RP62A 3241341 YP_187949.1 CDS norA NC_002976.3 352474 353637 D identified by similarity to EGAD:18536; match to protein family HMM PF00083; quinolone resistance protein NorA 352474..353637 Staphylococcus epidermidis RP62A 3240912 YP_187950.1 CDS SERP0354 NC_002976.3 353959 354429 D hypothetical protein 353959..354429 Staphylococcus epidermidis RP62A 3240913 YP_187951.1 CDS SERP0355 NC_002976.3 354519 355025 D identified by match to protein family HMM PF04073; ebsC protein 354519..355025 Staphylococcus epidermidis RP62A 3240914 YP_187952.1 CDS SERP0356 NC_002976.3 355125 355223 R hypothetical protein complement(355125..355223) Staphylococcus epidermidis RP62A 3240915 YP_187953.1 CDS SERP0357 NC_002976.3 355256 356014 D identified by match to protein family HMM PF00455; DeoR family transcriptional regulator 355256..356014 Staphylococcus epidermidis RP62A 3240916 YP_187954.1 CDS fruK NC_002976.3 356011 356931 D identified by similarity to EGAD:107874; match to protein family HMM PF00294; 1-phosphofructokinase 356011..356931 Staphylococcus epidermidis RP62A 3240917 YP_187955.1 CDS fruA NC_002976.3 356937 358889 D identified by similarity to GP:9501781; match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose-specific IIABC components 356937..358889 Staphylococcus epidermidis RP62A 3241739 YP_187956.1 CDS nagA NC_002976.3 359264 360436 D identified by similarity to EGAD:107401; match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 359264..360436 Staphylococcus epidermidis RP62A 3241740 YP_187957.1 CDS SERP0361 NC_002976.3 360673 362022 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS domain-containing protein 360673..362022 Staphylococcus epidermidis RP62A 3241741 YP_187958.1 CDS SERP0362 NC_002976.3 362236 363075 D identified by match to protein family HMM PF00248; aldo/keto reductase 362236..363075 Staphylococcus epidermidis RP62A 3241742 YP_187959.1 CDS SERP0363 NC_002976.3 363278 364384 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 363278..364384 Staphylococcus epidermidis RP62A 3241743 YP_187960.1 CDS saeS NC_002976.3 364454 365419 R identified by similarity to GP:5726301; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase SaeS complement(364454..365419) Staphylococcus epidermidis RP62A 3241744 YP_187961.1 CDS saeR NC_002976.3 365509 366198 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SaeR complement(365509..366198) Staphylococcus epidermidis RP62A 3241745 YP_187962.1 CDS SERP0366 NC_002976.3 366173 366646 R identified by similarity to OMNI:NTL01BH2256; hypothetical protein complement(366173..366646) Staphylococcus epidermidis RP62A 3241160 YP_187963.1 CDS SERP0367 NC_002976.3 366697 367134 R lipoprotein complement(366697..367134) Staphylococcus epidermidis RP62A 3241161 YP_187964.1 CDS SERP0368 NC_002976.3 367540 367638 D hypothetical protein 367540..367638 Staphylococcus epidermidis RP62A 3241162 YP_187965.1 CDS SERP0369 NC_002976.3 367730 367885 R identified by similarity to GP:8918792; truncated IS1272 transposase complement(367730..367885) Staphylococcus epidermidis RP62A 3241163 YP_187966.1 CDS SERP0370 NC_002976.3 368235 368834 R hypothetical protein complement(368235..368834) Staphylococcus epidermidis RP62A 3241164 YP_187967.1 CDS SERP0371 NC_002976.3 368937 369575 R identified by similarity to GP:2808502; match to protein family HMM PF04055; exsD protein complement(368937..369575) Staphylococcus epidermidis RP62A 3241165 YP_187968.1 CDS SERP0372 NC_002976.3 369651 370070 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase complement(369651..370070) Staphylococcus epidermidis RP62A 3241335 YP_187969.1 CDS SERP0373 NC_002976.3 370075 370746 R identified by match to protein family HMM TIGR00364; exoenzyme S synthesis protein B complement(370075..370746) Staphylococcus epidermidis RP62A 3241336 YP_187970.1 CDS pabA NC_002976.3 371043 371630 D identified by similarity to EGAD:15630; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase, glutamine amidotransferase, component II 371043..371630 Staphylococcus epidermidis RP62A 3241337 YP_187971.1 CDS SERP0376 NC_002976.3 373430 373636 D hypothetical protein 373430..373636 Staphylococcus epidermidis RP62A 3240918 YP_187972.1 CDS SERP0378 NC_002976.3 374374 375378 D identified by match to protein family HMM PF02626; urea amidolyase 374374..375378 Staphylococcus epidermidis RP62A 3240920 YP_187973.1 CDS SERP0379 NC_002976.3 375930 377870 D identified by match to protein family HMM PF00884; sulfatase 375930..377870 Staphylococcus epidermidis RP62A 3240921 YP_187974.1 CDS SERP0380 NC_002976.3 378546 379559 R RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase complement(378546..379559) Staphylococcus epidermidis RP62A 3240922 YP_187975.1 CDS SERP0381 NC_002976.3 379917 380024 R hypothetical protein complement(379917..380024) Staphylococcus epidermidis RP62A 3241737 YP_187976.1 CDS SERP0382 NC_002976.3 380323 381138 R identified by match to protein family HMM PF02535; gufA protein complement(380323..381138) Staphylococcus epidermidis RP62A 3241738 YP_187977.1 CDS SERP0383 NC_002976.3 381266 383149 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 381266..383149 Staphylococcus epidermidis RP62A 3241746 YP_187978.1 CDS recQ-1 NC_002976.3 383163 384941 D identified by similarity to OMNI:NTL01LL1848; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 383163..384941 Staphylococcus epidermidis RP62A 3241747 YP_187979.1 CDS SERP0385 NC_002976.3 385141 386115 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 385141..386115 Staphylococcus epidermidis RP62A 3241319 YP_187980.1 CDS SERP0386 NC_002976.3 386108 387622 D identified by match to protein family HMM PF00528; match to protein family HMM PF04069; ABC transporter permease 386108..387622 Staphylococcus epidermidis RP62A 3241320 YP_187981.1 CDS hisC NC_002976.3 387825 388880 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 387825..388880 Staphylococcus epidermidis RP62A 3241321 YP_187982.1 CDS SERP0388 NC_002976.3 389003 389542 D identified by similarity to OMNI:NTL01SA0701; hypothetical protein 389003..389542 Staphylococcus epidermidis RP62A 3241322 YP_187983.1 CDS SERP0389 NC_002976.3 389609 392218 R identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(389609..392218) Staphylococcus epidermidis RP62A 3241323 YP_187984.1 CDS bmrU NC_002976.3 392617 393540 R identified by similarity to EGAD:20823; match to protein family HMM TIGR00147; bmrU protein complement(392617..393540) Staphylococcus epidermidis RP62A 3241324 YP_187985.1 CDS SERP0392 NC_002976.3 394195 395700 R identified by similarity to EGAD:9223; match to protein family HMM PF00854; match to protein family HMM TIGR00924; di-tripeptide transporter complement(394195..395700) Staphylococcus epidermidis RP62A 3241326 YP_187986.1 CDS SERP0393 NC_002976.3 395687 395782 R hypothetical protein complement(395687..395782) Staphylococcus epidermidis RP62A 3241327 YP_187987.1 CDS SERP0394 NC_002976.3 395984 396484 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(395984..396484) Staphylococcus epidermidis RP62A 3241328 YP_187988.1 CDS SERP0395 NC_002976.3 396498 397373 R identified by match to protein family HMM PF00892; hypothetical protein complement(396498..397373) Staphylococcus epidermidis RP62A 3241329 YP_187989.1 CDS nrdI NC_002976.3 398129 398527 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 398129..398527 Staphylococcus epidermidis RP62A 3241330 YP_187990.1 CDS nrdE NC_002976.3 398490 400595 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 398490..400595 Staphylococcus epidermidis RP62A 3241159 YP_187991.1 CDS nrdF NC_002976.3 400714 401682 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 400714..401682 Staphylococcus epidermidis RP62A 3241169 YP_187992.1 CDS SERP0399 NC_002976.3 401654 401920 D hypothetical protein 401654..401920 Staphylococcus epidermidis RP62A 3241170 YP_187993.1 CDS SERP0400 NC_002976.3 401936 402910 D identified by match to protein family HMM PF01032; iron ABC transporter permease 401936..402910 Staphylococcus epidermidis RP62A 3242513 YP_187994.1 CDS SERP0401 NC_002976.3 402900 403853 D identified by similarity to EGAD:10563; match to protein family HMM PF01032; iron ABC transporter permease 402900..403853 Staphylococcus epidermidis RP62A 3242514 YP_187995.1 CDS SERP0402 NC_002976.3 403850 404629 D identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 403850..404629 Staphylococcus epidermidis RP62A 3242515 YP_187996.1 CDS SERP0403 NC_002976.3 404708 405751 D identified by match to protein family HMM PF01497; transferrin receptor 404708..405751 Staphylococcus epidermidis RP62A 3242516 YP_187997.1 CDS SERP0404 NC_002976.3 405902 406216 R identified by similarity to OMNI:SA0800; match to protein family HMM PF05495; hypothetical protein complement(405902..406216) Staphylococcus epidermidis RP62A 3242517 YP_187998.1 CDS murB NC_002976.3 406238 407158 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(406238..407158) Staphylococcus epidermidis RP62A 3242398 YP_187999.1 CDS SERP0406 NC_002976.3 407287 407814 R identified by similarity to OMNI:SA0802; match to protein family HMM PF04229; hypothetical protein complement(407287..407814) Staphylococcus epidermidis RP62A 3242399 YP_188000.1 CDS SERP0407 NC_002976.3 407931 408821 D lipoprotein 407931..408821 Staphylococcus epidermidis RP62A 3242400 YP_188001.1 CDS SERP0408 NC_002976.3 408970 409290 D identified by similarity to OMNI:SA0804; hypothetical protein 408970..409290 Staphylococcus epidermidis RP62A 3242331 YP_188002.1 CDS SERP0409 NC_002976.3 409561 410691 D identified by similarity to OMNI:NTL01SA0718; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 409561..410691 Staphylococcus epidermidis RP62A 3242332 YP_188003.1 CDS pepT NC_002976.3 410782 412020 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(410782..412020) Staphylococcus epidermidis RP62A 3242333 YP_188004.1 CDS SERP0411 NC_002976.3 412041 412535 R identified by similarity to OMNI:SA0807; hypothetical protein complement(412041..412535) Staphylococcus epidermidis RP62A 3242334 YP_188005.1 CDS SERP0412 NC_002976.3 412551 413312 R hypothetical protein complement(412551..413312) Staphylococcus epidermidis RP62A 3242335 YP_188006.1 CDS SERP0413 NC_002976.3 413507 414583 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; GGDEF domain-containing protein complement(413507..414583) Staphylococcus epidermidis RP62A 3242609 YP_188007.1 CDS SERP0414 NC_002976.3 414923 416002 D Possible involvement in methicillin resistance; identified by similarity to EGAD:23076; match to protein family HMM PF00953; glycosyl transferase, group 4 family protein 414923..416002 Staphylococcus epidermidis RP62A 3242610 YP_188008.1 CDS SERP0415 NC_002976.3 416063 416704 R identified by similarity to OMNI:SA0811; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(416063..416704) Staphylococcus epidermidis RP62A 3242611 YP_188009.1 CDS SERP0416 NC_002976.3 416849 417715 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 416849..417715 Staphylococcus epidermidis RP62A 3242612 YP_188010.1 CDS SERP0417 NC_002976.3 417958 419121 D identified by similarity to EGAD:24480; match to protein family HMM PF00271; competence protein ComF 417958..419121 Staphylococcus epidermidis RP62A 3242613 YP_188011.1 CDS SERP0418 NC_002976.3 419114 419788 D competence protein ComF 419114..419788 Staphylococcus epidermidis RP62A 3242614 YP_188012.1 CDS SERP0419 NC_002976.3 419849 420418 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 419849..420418 Staphylococcus epidermidis RP62A 3242615 YP_188013.1 CDS secA NC_002976.3 421084 423618 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 421084..423618 Staphylococcus epidermidis RP62A 3242616 YP_188014.1 CDS prfB NC_002976.3 423814 424930 D identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; programmed frameshift; peptide chain release factor 2 join(423814..423885,423887..424930) Staphylococcus epidermidis RP62A 3240768 YP_188015.1 CDS SERP0422 NC_002976.3 425270 426070 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 425270..426070 Staphylococcus epidermidis RP62A 3240769 YP_188016.1 CDS SERP0423 NC_002976.3 426379 427020 D HD domain-containing protein 426379..427020 Staphylococcus epidermidis RP62A 3240770 YP_188017.1 CDS SERP0424 NC_002976.3 427026 427259 D identified by similarity to EGAD:12337; hypothetical protein 427026..427259 Staphylococcus epidermidis RP62A 3240771 YP_188018.1 CDS SERP0425 NC_002976.3 427742 427834 R hypothetical protein complement(427742..427834) Staphylococcus epidermidis RP62A 3240772 YP_188019.1 CDS uvrB NC_002976.3 427816 429801 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 427816..429801 Staphylococcus epidermidis RP62A 3240773 YP_188020.1 CDS uvrA NC_002976.3 429809 432643 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 429809..432643 Staphylococcus epidermidis RP62A 3240774 YP_188021.1 CDS hprK NC_002976.3 432998 433930 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 432998..433930 Staphylococcus epidermidis RP62A 3240775 YP_188022.1 CDS lgt NC_002976.3 433936 434775 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 433936..434775 Staphylococcus epidermidis RP62A 3241078 YP_188023.1 CDS SERP0430 NC_002976.3 434781 435308 D identified by match to protein family HMM PF00132; acetyltransferase 434781..435308 Staphylococcus epidermidis RP62A 3241079 YP_188024.1 CDS yvcD NC_002976.3 435275 436714 D identified by similarity to GP:5690062; match to protein family HMM PF00515; hypothetical protein 435275..436714 Staphylococcus epidermidis RP62A 3241080 YP_188025.1 CDS trxB NC_002976.3 436779 437711 D identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 436779..437711 Staphylococcus epidermidis RP62A 3241081 YP_188026.1 CDS SERP0433 NC_002976.3 437908 438795 D identified by similarity to OMNI:SA0830; match to protein family HMM PF03668; hypothetical protein 437908..438795 Staphylococcus epidermidis RP62A 3241082 YP_188027.1 CDS SERP0434 NC_002976.3 438804 439790 D identified by similarity to OMNI:SA0831; match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 438804..439790 Staphylococcus epidermidis RP62A 3240548 YP_188028.1 CDS SERP0435 NC_002976.3 439919 440863 D identified by similarity to OMNI:SA0832; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 439919..440863 Staphylococcus epidermidis RP62A 3240549 YP_188029.1 CDS clpP NC_002976.3 441191 441775 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 441191..441775 Staphylococcus epidermidis RP62A 3240550 YP_188030.1 CDS SERP0437 NC_002976.3 442037 442228 R hypothetical protein complement(442037..442228) Staphylococcus epidermidis RP62A 3242267 YP_188031.1 CDS SERP0438 NC_002976.3 442259 443158 R identified by match to protein family HMM TIGR01777; hypothetical protein complement(442259..443158) Staphylococcus epidermidis RP62A 3242268 YP_188032.1 CDS SERP0439 NC_002976.3 444023 444643 D hypothetical protein 444023..444643 Staphylococcus epidermidis RP62A 3242269 YP_188033.1 CDS SERP0440 NC_002976.3 444816 445052 R hypothetical protein complement(444816..445052) Staphylococcus epidermidis RP62A 3242270 YP_188034.1 CDS gapR NC_002976.3 445408 446421 D identified by similarity to OMNI:SA0837; match to protein family HMM PF04198; gap transcriptional regulator 445408..446421 Staphylococcus epidermidis RP62A 3242271 YP_188035.1 CDS gapA-1 NC_002976.3 446473 447483 D identified by similarity to EGAD:22254; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 446473..447483 Staphylococcus epidermidis RP62A 3242272 YP_188036.1 CDS pgk NC_002976.3 447677 448867 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 447677..448867 Staphylococcus epidermidis RP62A 3242273 YP_188037.1 CDS tpiA NC_002976.3 448998 449759 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 448998..449759 Staphylococcus epidermidis RP62A 3242274 YP_188038.1 CDS pgm NC_002976.3 449762 451279 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 449762..451279 Staphylococcus epidermidis RP62A 3241754 YP_188039.1 CDS eno NC_002976.3 451418 452722 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 451418..452722 Staphylococcus epidermidis RP62A 3241755 YP_188040.1 CDS SERP0447 NC_002976.3 452888 453346 D hypothetical protein 452888..453346 Staphylococcus epidermidis RP62A 3241756 YP_188041.1 CDS secG NC_002976.3 453415 453648 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 453415..453648 Staphylococcus epidermidis RP62A 3241757 YP_188042.1 CDS est NC_002976.3 453949 454689 D identified by similarity to EGAD:18058; carboxylesterase 453949..454689 Staphylococcus epidermidis RP62A 3241758 YP_188043.1 CDS SERP0450 NC_002976.3 454724 457102 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; VacB/RNase II family exoribonuclease 454724..457102 Staphylococcus epidermidis RP62A 3241759 YP_188044.1 CDS smpB NC_002976.3 457127 457597 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 457127..457597 Staphylococcus epidermidis RP62A 3241760 YP_188045.1 CDS SERP0452 NC_002976.3 458147 458377 R hypothetical protein complement(458147..458377) Staphylococcus epidermidis RP62A 3241761 YP_188046.1 CDS SERP0454 NC_002976.3 458978 459166 D hypothetical protein 458978..459166 Staphylococcus epidermidis RP62A 3240636 YP_188047.1 CDS SERP0455 NC_002976.3 459310 459852 R lipoprotein complement(459310..459852) Staphylococcus epidermidis RP62A 3240637 YP_188048.1 CDS SERP0456 NC_002976.3 460587 460757 D hypothetical protein 460587..460757 Staphylococcus epidermidis RP62A 3241166 YP_188049.1 CDS SERP0457 NC_002976.3 461015 461248 R hypothetical protein complement(461015..461248) Staphylococcus epidermidis RP62A 3241167 YP_188050.1 CDS SERP0458 NC_002976.3 461861 463168 R identified by match to protein family HMM PF02386; sodium transport family protein complement(461861..463168) Staphylococcus epidermidis RP62A 3241168 YP_188051.1 CDS SERP0459 NC_002976.3 463194 463289 R hypothetical protein complement(463194..463289) Staphylococcus epidermidis RP62A 3242518 YP_188052.1 CDS SERP0460 NC_002976.3 463394 463738 D identified by similarity to OMNI:NTL02ML4319; hypothetical protein 463394..463738 Staphylococcus epidermidis RP62A 3242519 YP_188053.1 CDS SERP0461 NC_002976.3 463958 464374 R glyoxalase complement(463958..464374) Staphylococcus epidermidis RP62A 3242520 YP_188054.1 CDS SERP0462 NC_002976.3 465190 465366 R hypothetical protein complement(465190..465366) Staphylococcus epidermidis RP62A 3242521 YP_188055.1 CDS SERP0463 NC_002976.3 465874 466377 R identified by similarity to OMNI:NTL01SA0184; hypothetical protein complement(465874..466377) Staphylococcus epidermidis RP62A 3242522 YP_188056.1 CDS SERP0464 NC_002976.3 466549 466674 D hypothetical protein 466549..466674 Staphylococcus epidermidis RP62A 3242523 YP_188057.1 CDS SERP0465 NC_002976.3 466664 467605 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 466664..467605 Staphylococcus epidermidis RP62A 3242524 YP_188058.1 CDS SERP0466 NC_002976.3 468971 469171 D identified by match to protein family HMM PF00313; CSD family cold shock protein 468971..469171 Staphylococcus epidermidis RP62A 3242396 YP_188059.1 CDS SERP0467 NC_002976.3 469792 470016 R identified by similarity to OMNI:SA0862; hypothetical protein complement(469792..470016) Staphylococcus epidermidis RP62A 3242397 YP_188060.1 CDS SERP0468 NC_002976.3 470040 470324 R identified by similarity to GP:14246587; hypothetical protein complement(470040..470324) Staphylococcus epidermidis RP62A 3242336 YP_188061.1 CDS SERP0469 NC_002976.3 470423 471169 R identified by similarity to EGAD:108826; hypothetical protein complement(470423..471169) Staphylococcus epidermidis RP62A 3242337 YP_188062.1 CDS SERP0470 NC_002976.3 471450 471686 D flagellar hook-length control protein-related protein 471450..471686 Staphylococcus epidermidis RP62A 3242338 YP_188063.1 CDS SERP0471 NC_002976.3 471746 472300 R identified by similarity to OMNI:NTL01SA0772; hypothetical protein complement(471746..472300) Staphylococcus epidermidis RP62A 3242339 YP_188064.1 CDS SERP0472 NC_002976.3 472490 472678 R identified by similarity to OMNI:NTL01SA0773; hypothetical protein complement(472490..472678) Staphylococcus epidermidis RP62A 3242340 YP_188065.1 CDS SERP0473 NC_002976.3 473071 473208 D hypothetical protein 473071..473208 Staphylococcus epidermidis RP62A 3242341 YP_188066.1 CDS SERP0474 NC_002976.3 473369 473572 D identified by similarity to OMNI:NTL01SA0775; hypothetical protein 473369..473572 Staphylococcus epidermidis RP62A 3242342 YP_188067.1 CDS SERP0475 NC_002976.3 473564 473800 R identified by similarity to OMNI:NTL01SA0776; hypothetical protein complement(473564..473800) Staphylococcus epidermidis RP62A 3242343 YP_188068.1 CDS SERP0476 NC_002976.3 474014 474601 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 474014..474601 Staphylococcus epidermidis RP62A 3242617 YP_188069.1 CDS SERP0477 NC_002976.3 474872 475372 R identified by match to protein family HMM PF00583; acetyltransferase complement(474872..475372) Staphylococcus epidermidis RP62A 3242618 YP_188070.1 CDS SERP0478 NC_002976.3 475958 476113 D identified by similarity to GP:8918792; truncated IS1272 transposase 475958..476113 Staphylococcus epidermidis RP62A 3242619 YP_188071.1 CDS SERP0479 NC_002976.3 476098 476253 D identified by similarity to OMNI:SA0036; truncated IS1272 transposase 476098..476253 Staphylococcus epidermidis RP62A 3242620 YP_188072.1 CDS SERP0480 NC_002976.3 476297 476719 R identified by match to protein family HMM PF02566; OsmC/Ohr family protein complement(476297..476719) Staphylococcus epidermidis RP62A 3240764 YP_188073.1 CDS aroD NC_002976.3 476880 477596 D catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 476880..477596 Staphylococcus epidermidis RP62A 3240765 YP_188074.1 CDS SERP0482 NC_002976.3 477677 478219 D identified by match to protein family HMM PF00881; nitroreductase 477677..478219 Staphylococcus epidermidis RP62A 3240766 YP_188075.1 CDS SERP0483 NC_002976.3 478402 478725 R identified by match to protein family HMM PF00085; thioredoxin complement(478402..478725) Staphylococcus epidermidis RP62A 3240767 YP_188076.1 CDS SERP0484 NC_002976.3 478868 479221 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 478868..479221 Staphylococcus epidermidis RP62A 3241070 YP_188077.1 CDS gcvH NC_002976.3 479395 479775 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 479395..479775 Staphylococcus epidermidis RP62A 3241071 YP_188078.1 CDS SERP0486 NC_002976.3 479929 480021 D hypothetical protein 479929..480021 Staphylococcus epidermidis RP62A 3241072 YP_188079.1 CDS SERP0487 NC_002976.3 480035 480421 D identified by match to protein family HMM PF01751; TOPRIM domain-containing protein 480035..480421 Staphylococcus epidermidis RP62A 3241073 YP_188080.1 CDS SERP0488 NC_002976.3 480414 480710 D thioredoxin 480414..480710 Staphylococcus epidermidis RP62A 3241074 YP_188081.1 CDS SERP0489 NC_002976.3 480963 481988 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 480963..481988 Staphylococcus epidermidis RP62A 3241075 YP_188082.1 CDS SERP0490 NC_002976.3 481981 482676 D identified by match to protein family HMM PF00528; ABC transporter permease 481981..482676 Staphylococcus epidermidis RP62A 3241076 YP_188083.1 CDS SERP0491 NC_002976.3 482697 483509 D identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 482697..483509 Staphylococcus epidermidis RP62A 3241077 YP_188084.1 CDS SERP0492 NC_002976.3 483588 483686 R hypothetical protein complement(483588..483686) Staphylococcus epidermidis RP62A 3240551 YP_188085.1 CDS SERP0493 NC_002976.3 483779 483949 R hypothetical protein complement(483779..483949) Staphylococcus epidermidis RP62A 3240552 YP_188086.1 CDS SERP0494 NC_002976.3 484112 484303 D identified by similarity to OMNI:SA0912; match to protein family HMM PF05532; hypothetical protein 484112..484303 Staphylococcus epidermidis RP62A 3240553 YP_188087.1 CDS SERP0495 NC_002976.3 484369 485229 R identified by similarity to OMNI:NTL01SA0801; match to protein family HMM PF04018; hypothetical protein complement(484369..485229) Staphylococcus epidermidis RP62A 3240554 YP_188088.1 CDS sufC NC_002976.3 485551 486312 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 485551..486312 Staphylococcus epidermidis RP62A 3240555 YP_188089.1 CDS sufD NC_002976.3 486407 487714 D identified by similarity to OMNI:NTL01SA0803; match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 486407..487714 Staphylococcus epidermidis RP62A 3240556 YP_188090.1 CDS sufS NC_002976.3 487782 489023 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; cysteine desulfurase 487782..489023 Staphylococcus epidermidis RP62A 3240557 YP_188091.1 CDS SERP0499 NC_002976.3 489013 489477 D identified by match to protein family HMM PF01592; NifU domain-containing protein 489013..489477 Staphylococcus epidermidis RP62A 3240558 YP_188092.1 CDS sufB NC_002976.3 489683 491080 D identified by similarity to OMNI:SA0918; match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 489683..491080 Staphylococcus epidermidis RP62A 3240559 YP_188093.1 CDS SERP0501 NC_002976.3 491410 491556 D hypothetical protein 491410..491556 Staphylococcus epidermidis RP62A 3242275 YP_188094.1 CDS SERP0502 NC_002976.3 491547 491771 D hypothetical protein 491547..491771 Staphylococcus epidermidis RP62A 3242276 YP_188095.1 CDS SERP0503 NC_002976.3 492239 492445 D identified by similarity to OMNI:SA0285; hypothetical protein 492239..492445 Staphylococcus epidermidis RP62A 3242277 YP_188096.1 CDS SERP0504 NC_002976.3 492542 492901 D identified by similarity to OMNI:SA0299; hypothetical protein 492542..492901 Staphylococcus epidermidis RP62A 3242278 YP_188097.1 CDS SERP0505 NC_002976.3 492915 493325 D identified by similarity to OMNI:NTL01SA0304; hypothetical protein 492915..493325 Staphylococcus epidermidis RP62A 3242279 YP_188098.1 CDS SERP0506 NC_002976.3 493340 493507 R hypothetical protein complement(493340..493507) Staphylococcus epidermidis RP62A 3241750 YP_188099.1 CDS SERP0507 NC_002976.3 493871 494896 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; CBS domain-containing protein 493871..494896 Staphylococcus epidermidis RP62A 3241751 YP_188100.1 CDS SERP0508 NC_002976.3 495263 496111 D identified by similarity to OMNI:SA0924; match to protein family HMM PF01904; hypothetical protein 495263..496111 Staphylococcus epidermidis RP62A 3241752 YP_188101.1 CDS SERP0509 NC_002976.3 496124 496951 D identified by similarity to OMNI:SA0925; match to protein family HMM PF01925; hypothetical protein 496124..496951 Staphylococcus epidermidis RP62A 3241753 YP_188102.1 CDS SERP0510 NC_002976.3 497037 498356 D identified by match to protein family HMM PF00149; match to protein family HMM PF01009; 5'-nucleotidase 497037..498356 Staphylococcus epidermidis RP62A 3240627 YP_188103.1 CDS lipA NC_002976.3 498445 499359 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 498445..499359 Staphylococcus epidermidis RP62A 3240628 YP_188104.1 CDS SERP0512 NC_002976.3 499546 499935 D identified by similarity to GP:14246694; hypothetical protein 499546..499935 Staphylococcus epidermidis RP62A 3240629 YP_188105.1 CDS SERP0513 NC_002976.3 499995 500261 R identified by similarity to OMNI:NTL01SA0816; hypothetical protein complement(499995..500261) Staphylococcus epidermidis RP62A 3240630 YP_188106.1 CDS SERP0514 NC_002976.3 500380 500814 D identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934; hypothetical protein 500380..500814 Staphylococcus epidermidis RP62A 3240631 YP_188107.1 CDS SERP0515 NC_002976.3 500814 501593 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD superfamily hydrolase 500814..501593 Staphylococcus epidermidis RP62A 3240632 YP_188108.1 CDS SERP0516 NC_002976.3 501635 502606 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 501635..502606 Staphylococcus epidermidis RP62A 3240633 YP_188109.1 CDS SERP0517 NC_002976.3 503011 503157 D identified by similarity to OMNI:NTL01SA0820; hypothetical protein 503011..503157 Staphylococcus epidermidis RP62A 3240634 YP_188110.1 CDS dltA NC_002976.3 503173 504630 D transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 503173..504630 Staphylococcus epidermidis RP62A 3242599 YP_188111.1 CDS dltB NC_002976.3 504627 505841 D identified by similarity to EGAD:22430; match to protein family HMM PF03062; dltB protein 504627..505841 Staphylococcus epidermidis RP62A 3242600 YP_188112.1 CDS dltC NC_002976.3 505859 506095 D D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 505859..506095 Staphylococcus epidermidis RP62A 3242601 YP_188113.1 CDS dltD NC_002976.3 506092 507330 D identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; dltD protein 506092..507330 Staphylococcus epidermidis RP62A 3242602 YP_188114.1 CDS SERP0522 NC_002976.3 507623 507865 R identified by match to protein family HMM PF01106; NifU domain-containing protein complement(507623..507865) Staphylococcus epidermidis RP62A 3242603 YP_188115.1 CDS SERP0523 NC_002976.3 507965 508285 D identified by similarity to OMNI:NTL01SA0826; hypothetical protein 507965..508285 Staphylococcus epidermidis RP62A 3242604 YP_188116.1 CDS SERP0524 NC_002976.3 508478 509542 R identified by similarity to SP:P00393; match to protein family HMM PF00070; NADH dehydrogenase complement(508478..509542) Staphylococcus epidermidis RP62A 3242605 YP_188117.1 CDS SERP0525 NC_002976.3 509829 510074 D identified by similarity to OMNI:SA0942; hypothetical protein 509829..510074 Staphylococcus epidermidis RP62A 3242606 YP_188118.1 CDS SERP0526 NC_002976.3 510104 510463 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; HesB domain-containing protein 510104..510463 Staphylococcus epidermidis RP62A 3242607 YP_188119.1 CDS SERP0527 NC_002976.3 510733 511941 D identified by match to protein family HMM PF00070; NADH dehydrogenase 510733..511941 Staphylococcus epidermidis RP62A 3240646 YP_188120.1 CDS SERP0528 NC_002976.3 512262 513743 D identified by match to protein family HMM PF00883; cytosol aminopeptidase 512262..513743 Staphylococcus epidermidis RP62A 3240647 YP_188121.1 CDS SERP0529 NC_002976.3 513929 515245 D identified by match to protein family HMM PF03553; hypothetical protein 513929..515245 Staphylococcus epidermidis RP62A 3240648 YP_188122.1 CDS SERP0530 NC_002976.3 515268 515642 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; ComA2 family protein 515268..515642 Staphylococcus epidermidis RP62A 3240649 YP_188123.1 CDS SERP0531 NC_002976.3 515701 516855 R identified by similarity to OMNI:NTL01SA0834; hypothetical protein complement(515701..516855) Staphylococcus epidermidis RP62A 3240650 YP_188124.1 CDS mnhG NC_002976.3 517160 517516 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G complement(517160..517516) Staphylococcus epidermidis RP62A 3240651 YP_188125.1 CDS mnhF NC_002976.3 517494 517787 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F complement(517494..517787) Staphylococcus epidermidis RP62A 3240652 YP_188126.1 CDS mnhE NC_002976.3 517787 518266 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit E complement(517787..518266) Staphylococcus epidermidis RP62A 3240653 YP_188127.1 CDS mnhD NC_002976.3 518268 519764 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(518268..519764) Staphylococcus epidermidis RP62A 3242215 YP_188128.1 CDS mnhC NC_002976.3 519751 520098 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(519751..520098) Staphylococcus epidermidis RP62A 3242216 YP_188129.1 CDS mnhB NC_002976.3 520098 520526 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit B complement(520098..520526) Staphylococcus epidermidis RP62A 3242217 YP_188130.1 CDS mnhA NC_002976.3 520519 522924 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A complement(520519..522924) Staphylococcus epidermidis RP62A 3242218 YP_188131.1 CDS kapB NC_002976.3 523118 523498 R kinase-associated protein B complement(523118..523498) Staphylococcus epidermidis RP62A 3242219 YP_188132.1 CDS SERP0540 NC_002976.3 523564 524157 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase, cyclophilin-type 523564..524157 Staphylococcus epidermidis RP62A 3240638 YP_188133.1 CDS SERP0541 NC_002976.3 524454 524834 D identified by similarity to SP:P80870; match to protein family HMM PF00575; general stress protein 13 524454..524834 Staphylococcus epidermidis RP62A 3240639 YP_188134.1 CDS SERP0542 NC_002976.3 525155 526282 D identified by similarity to EGAD:45866; match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 525155..526282 Staphylococcus epidermidis RP62A 3242596 YP_188135.1 CDS SERP0544 NC_002976.3 527330 528343 R RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase complement(527330..528343) Staphylococcus epidermidis RP62A 3242598 YP_188136.1 CDS rocD NC_002976.3 529033 530223 D identified by similarity to EGAD:21835; match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase 529033..530223 Staphylococcus epidermidis RP62A 3242608 YP_188137.1 CDS gluD NC_002976.3 530332 531576 D identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase, NAD-specific 530332..531576 Staphylococcus epidermidis RP62A 3240640 YP_188138.1 CDS SERP0547 NC_002976.3 531768 532817 R identified by similarity to EGAD:9350; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase GlpQ complement(531768..532817) Staphylococcus epidermidis RP62A 3240641 YP_188139.1 CDS argH NC_002976.3 532967 534358 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(532967..534358) Staphylococcus epidermidis RP62A 3240642 YP_188140.1 CDS argG NC_002976.3 534348 535553 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(534348..535553) Staphylococcus epidermidis RP62A 3240643 YP_188141.1 CDS pgi NC_002976.3 535900 537231 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 535900..537231 Staphylococcus epidermidis RP62A 3240644 YP_188142.1 CDS SERP0551 NC_002976.3 537549 538124 D identified by similarity to OMNI:NTL01SA0852; hypothetical protein 537549..538124 Staphylococcus epidermidis RP62A 3240645 YP_188143.1 CDS spsA NC_002976.3 538128 538649 D identified by similarity to SP:P72364; match to protein family HMM PF00461; signal peptidase IA, inactive 538128..538649 Staphylococcus epidermidis RP62A 3242208 YP_188144.1 CDS spsB NC_002976.3 538668 539243 D identified by similarity to SP:P72365; match to protein family HMM PF00461; signal peptidase IB 538668..539243 Staphylococcus epidermidis RP62A 3242209 YP_188145.1 CDS rexB NC_002976.3 539364 542843 D identified by similarity to EGAD:12281; exonuclease RexB 539364..542843 Staphylococcus epidermidis RP62A 3242210 YP_188146.1 CDS rexA NC_002976.3 542830 546486 D identified by similarity to EGAD:18428; match to protein family HMM PF00580; exonuclease RexA 542830..546486 Staphylococcus epidermidis RP62A 3242211 YP_188147.1 CDS SERP0556 NC_002976.3 546685 547590 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 546685..547590 Staphylococcus epidermidis RP62A 3242212 YP_188148.1 CDS SERP0557 NC_002976.3 547948 548349 D identified by similarity to OMNI:NTL01SA0858; hypothetical protein 547948..548349 Staphylococcus epidermidis RP62A 3242213 YP_188149.1 CDS SERP0558 NC_002976.3 548857 549870 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 548857..549870 Staphylococcus epidermidis RP62A 3242214 YP_188150.1 CDS SERP0559 NC_002976.3 550250 550405 D identified by similarity to GP:8918792; truncated IS1272 transposase 550250..550405 Staphylococcus epidermidis RP62A 3241477 YP_188151.1 CDS SERP0560 NC_002976.3 550615 551931 R NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase complement(550615..551931) Staphylococcus epidermidis RP62A 3241478 YP_188152.1 CDS SERP0561 NC_002976.3 552009 552830 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(552009..552830) Staphylococcus epidermidis RP62A 3241479 YP_188153.1 CDS SERP0562 NC_002976.3 552943 553251 D identified by match to protein family HMM PF01883; hypothetical protein 552943..553251 Staphylococcus epidermidis RP62A 3241480 YP_188154.1 CDS SERP0563 NC_002976.3 553646 555469 D identified by match to protein family HMM PF01757; hypothetical protein 553646..555469 Staphylococcus epidermidis RP62A 3241481 YP_188155.1 CDS clpB NC_002976.3 555678 558287 D identified by similarity to EGAD:20010; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 555678..558287 Staphylococcus epidermidis RP62A 3241482 YP_188156.1 CDS SERP0565 NC_002976.3 558754 559767 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 558754..559767 Staphylococcus epidermidis RP62A 3241483 YP_188157.1 CDS SERP0566 NC_002976.3 560026 560220 R identified by similarity to OMNI:SA0986; hypothetical protein complement(560026..560220) Staphylococcus epidermidis RP62A 3241491 YP_188158.1 CDS fabH NC_002976.3 560502 561443 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 560502..561443 Staphylococcus epidermidis RP62A 3241492 YP_188159.1 CDS fabF NC_002976.3 561455 562699 D identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 561455..562699 Staphylococcus epidermidis RP62A 3241342 YP_188160.1 CDS SERP0569 NC_002976.3 562770 563141 R hypothetical protein complement(562770..563141) Staphylococcus epidermidis RP62A 3241343 YP_188161.1 CDS oppB NC_002976.3 563383 564309 D identified by similarity to EGAD:8134; match to protein family HMM PF00528; oligopeptide ABC transporter permease 563383..564309 Staphylococcus epidermidis RP62A 3241344 YP_188162.1 CDS oppC NC_002976.3 564438 565379 D identified by similarity to GP:10717145; match to protein family HMM PF00528; oligopeptide ABC transporter permease 564438..565379 Staphylococcus epidermidis RP62A 3241345 YP_188163.1 CDS oppD NC_002976.3 565394 566473 D identified by similarity to EGAD:24096; match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppD 565394..566473 Staphylococcus epidermidis RP62A 3241346 YP_188164.1 CDS oppF NC_002976.3 566466 567404 D identified by similarity to SP:P24137; match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein OppF 566466..567404 Staphylococcus epidermidis RP62A 3241355 YP_188165.1 CDS oppA NC_002976.3 567431 569074 D identified by similarity to GP:10717143; match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 567431..569074 Staphylococcus epidermidis RP62A 3241356 YP_188166.1 CDS trpS NC_002976.3 569129 570118 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(569129..570118) Staphylococcus epidermidis RP62A 3242745 YP_188167.1 CDS spxA NC_002976.3 570409 570804 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; Spx family transcriptional regulator 570409..570804 Staphylococcus epidermidis RP62A 3242746 YP_188168.1 CDS SERP0577 NC_002976.3 571097 572110 R RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase complement(571097..572110) Staphylococcus epidermidis RP62A 3242747 YP_188169.1 CDS SERP0578 NC_002976.3 572719 573441 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 572719..573441 Staphylococcus epidermidis RP62A 3242748 YP_188170.1 CDS SERP0579 NC_002976.3 573537 574517 D identified by similarity to OMNI:SA1004; competence protein 573537..574517 Staphylococcus epidermidis RP62A 3242756 YP_188171.1 CDS pepF NC_002976.3 574567 576375 D identified by similarity to EGAD:13184; match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 574567..576375 Staphylococcus epidermidis RP62A 3242757 YP_188172.1 CDS SERP0581 NC_002976.3 576839 577636 R identified by similarity to OMNI:SA1006; hypothetical protein complement(576839..577636) Staphylococcus epidermidis RP62A 3242758 YP_188173.1 CDS SERP0582 NC_002976.3 577659 578102 R identified by match to protein family HMM PF01152; hypothetical protein complement(577659..578102) Staphylococcus epidermidis RP62A 3242759 YP_188174.1 CDS SERP0583 NC_002976.3 578106 578696 R identified by similarity to OMNI:NTL01SA0892; match to protein family HMM PF01928; hypothetical protein complement(578106..578696) Staphylococcus epidermidis RP62A 3240486 YP_188175.1 CDS SERP0584 NC_002976.3 578711 578848 R hypothetical protein complement(578711..578848) Staphylococcus epidermidis RP62A 3240487 YP_188176.1 CDS SERP0585 NC_002976.3 578981 579328 D identified by similarity to OMNI:NTL01SA0893; hypothetical protein 578981..579328 Staphylococcus epidermidis RP62A 3240488 YP_188177.1 CDS relA-1 NC_002976.3 579345 579980 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase 579345..579980 Staphylococcus epidermidis RP62A 3240489 YP_188178.1 CDS ppnK NC_002976.3 579994 580803 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 579994..580803 Staphylococcus epidermidis RP62A 3240496 YP_188179.1 CDS SERP0588 NC_002976.3 580800 581654 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 580800..581654 Staphylococcus epidermidis RP62A 3240497 YP_188180.1 CDS mgtE NC_002976.3 581679 583064 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 581679..583064 Staphylococcus epidermidis RP62A 3240498 YP_188181.1 CDS SERP0590 NC_002976.3 583074 584918 D identified by match to protein family HMM PF00999; match to protein family HMM PF02080; Na+/H+ exchanger family protein 583074..584918 Staphylococcus epidermidis RP62A 3240499 YP_188182.1 CDS SERP0591 NC_002976.3 585628 586251 D identified by similarity to GP:13700489; match to protein family HMM PF04276; hypothetical protein 585628..586251 Staphylococcus epidermidis RP62A 3240500 YP_188183.1 CDS SERP0592 NC_002976.3 586312 586575 D identified by similarity to OMNI:NTL01SA2470; hypothetical protein 586312..586575 Staphylococcus epidermidis RP62A 3240501 YP_188184.1 CDS SERP0593 NC_002976.3 586848 587051 R identified by similarity to GP:14245835; transposase, truncation complement(586848..587051) Staphylococcus epidermidis RP62A 3240502 YP_188185.1 CDS SERP0595 NC_002976.3 588630 590888 D identified by similarity to EGAD:39654; match to protein family HMM PF00005; daunorubicin resistance protein DrrC 588630..590888 Staphylococcus epidermidis RP62A 3240886 YP_188186.1 CDS SERP0596 NC_002976.3 590900 591028 D hypothetical protein 590900..591028 Staphylococcus epidermidis RP62A 3240887 YP_188187.1 CDS SERP0600 NC_002976.3 592507 592878 D identified by similarity to EGAD:14951; IS200 family transposase 592507..592878 Staphylococcus epidermidis RP62A 3240891 YP_188188.1 CDS fabI NC_002976.3 593100 593870 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 593100..593870 Staphylococcus epidermidis RP62A 3240892 YP_188189.1 CDS SERP0602 NC_002976.3 594267 595352 R identified by match to protein family HMM PF01594; hypothetical protein complement(594267..595352) Staphylococcus epidermidis RP62A 3241136 YP_188190.1 CDS SERP0603 NC_002976.3 595577 596332 D identified by similarity to OMNI:NTL01SA0902; match to protein family HMM PF00756; hypothetical protein 595577..596332 Staphylococcus epidermidis RP62A 3241137 YP_188191.1 CDS SERP0604 NC_002976.3 596485 596994 D similar to 2'-5' RNA ligase; hypothetical protein 596485..596994 Staphylococcus epidermidis RP62A 3241138 YP_188192.1 CDS SERP0605 NC_002976.3 597258 598451 R hypothetical protein complement(597258..598451) Staphylococcus epidermidis RP62A 3241139 YP_188193.1 CDS ypfP NC_002976.3 598429 599604 R processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase complement(598429..599604) Staphylococcus epidermidis RP62A 3241140 YP_188194.1 CDS murE NC_002976.3 600125 601609 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 600125..601609 Staphylococcus epidermidis RP62A 3241141 YP_188195.1 CDS SERP0608 NC_002976.3 601599 601844 D identified by similarity to OMNI:SA1024; hypothetical protein 601599..601844 Staphylococcus epidermidis RP62A 3241142 YP_188196.1 CDS prfC NC_002976.3 601848 603410 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 601848..603410 Staphylococcus epidermidis RP62A 3241143 YP_188197.1 CDS SERP0610 NC_002976.3 603719 604525 D identified by similarity to OMNI:SA1026; match to protein family HMM PF03741; TerC family integral membrane protein 603719..604525 Staphylococcus epidermidis RP62A 3240845 YP_188198.1 CDS SERP0611 NC_002976.3 604736 606493 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 604736..606493 Staphylococcus epidermidis RP62A 3240846 YP_188199.1 CDS SERP0612 NC_002976.3 606511 607869 D identified by match to protein family HMM PF02386; sodium transport family protein 606511..607869 Staphylococcus epidermidis RP62A 3240847 YP_188200.1 CDS SERP0613 NC_002976.3 608008 609513 D identified by match to protein family HMM PF01009; match to protein family HMM PF02872; 5' nucleotidase 608008..609513 Staphylococcus epidermidis RP62A 3240389 YP_188201.1 CDS SERP0614 NC_002976.3 609616 610218 R identified by match to protein family HMM PF02517; abortive infection family protein complement(609616..610218) Staphylococcus epidermidis RP62A 3240390 YP_188202.1 CDS SERP0615 NC_002976.3 610224 610409 R identified by similarity to OMNI:SA1035; hypothetical protein complement(610224..610409) Staphylococcus epidermidis RP62A 3240391 YP_188203.1 CDS SERP0616 NC_002976.3 610614 611600 D identified by match to protein family HMM PF02539; match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 610614..611600 Staphylococcus epidermidis RP62A 3240392 YP_188204.1 CDS SERP0617 NC_002976.3 611678 611896 R identified by similarity to OMNI:SA1033; hypothetical protein complement(611678..611896) Staphylococcus epidermidis RP62A 3240393 YP_188205.1 CDS SERP0618 NC_002976.3 612111 612686 D ComK family protein 612111..612686 Staphylococcus epidermidis RP62A 3240399 YP_188206.1 CDS SERP0620 NC_002976.3 614935 615276 D identified by similarity to GP:12620779; hypothetical protein 614935..615276 Staphylococcus epidermidis RP62A 3241046 YP_188207.1 CDS SERP0622 NC_002976.3 615966 616124 R hypothetical protein complement(615966..616124) Staphylococcus epidermidis RP62A 3241048 YP_188208.1 CDS SERP0623 NC_002976.3 616295 616402 D hypothetical protein 616295..616402 Staphylococcus epidermidis RP62A 3241049 YP_188209.1 CDS SERP0624 NC_002976.3 616775 616990 R identified by similarity to OMNI:NTL01SA0926; match to protein family HMM PF05154; hypothetical protein complement(616775..616990) Staphylococcus epidermidis RP62A 3241050 YP_188210.1 CDS SERP0625 NC_002976.3 617006 617098 D hypothetical protein 617006..617098 Staphylococcus epidermidis RP62A 3242220 YP_188211.1 CDS SERP0626 NC_002976.3 617221 617778 D identified by match to protein family HMM PF00583; acetyltransferase 617221..617778 Staphylococcus epidermidis RP62A 3242221 YP_188212.1 CDS menA NC_002976.3 618425 619363 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(618425..619363) Staphylococcus epidermidis RP62A 3242222 YP_188213.1 CDS SERP0628 NC_002976.3 619362 619457 D hypothetical protein 619362..619457 Staphylococcus epidermidis RP62A 3241484 YP_188214.1 CDS SERP0629 NC_002976.3 619533 620903 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase 619533..620903 Staphylococcus epidermidis RP62A 3241485 YP_188215.1 CDS menD NC_002976.3 620890 622563 D identified by similarity to EGAD:19018; match to protein family HMM PF02776; match to protein family HMM TIGR00173; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 620890..622563 Staphylococcus epidermidis RP62A 3241486 YP_188216.1 CDS SERP0631 NC_002976.3 622550 623353 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 622550..623353 Staphylococcus epidermidis RP62A 3241487 YP_188217.1 CDS menB NC_002976.3 623346 624164 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 623346..624164 Staphylococcus epidermidis RP62A 3241488 YP_188218.1 CDS SERP0633 NC_002976.3 624509 625693 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(624509..625693) Staphylococcus epidermidis RP62A 3241489 YP_188219.1 CDS SERP0634 NC_002976.3 625836 626843 R identified by similarity to OMNI:SA1059; match to protein family HMM PF01757; hypothetical protein complement(625836..626843) Staphylococcus epidermidis RP62A 3241490 YP_188220.1 CDS SERP0635 NC_002976.3 626997 627416 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 626997..627416 Staphylococcus epidermidis RP62A 3241347 YP_188221.1 CDS atlE NC_002976.3 627656 631663 R identified by similarity to EGAD:42602; match to protein family HMM PF01510; match to protein family HMM PF01832; bifunctional autolysin complement(627656..631663) Staphylococcus epidermidis RP62A 3241348 YP_188222.1 CDS SERP0637 NC_002976.3 631904 632326 R identified by match to protein family HMM PF00583; acetyltransferase complement(631904..632326) Staphylococcus epidermidis RP62A 3241349 YP_188223.1 CDS SERP0638 NC_002976.3 632421 632552 R identified by similarity to GP:8918792; truncated IS1272 transposase complement(632421..632552) Staphylococcus epidermidis RP62A 3241350 YP_188224.1 CDS SERP0639 NC_002976.3 632900 633370 R identified by similarity to EGAD:36365; hypothetical protein complement(632900..633370) Staphylococcus epidermidis RP62A 3241351 YP_188225.1 CDS SERP0640 NC_002976.3 633418 634656 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(633418..634656) Staphylococcus epidermidis RP62A 3241352 YP_188226.1 CDS SERP0641 NC_002976.3 635463 636665 D identified by match to protein family HMM PF00144; fmt protein 635463..636665 Staphylococcus epidermidis RP62A 3241353 YP_188227.1 CDS SERP0642 NC_002976.3 636822 637730 R catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC complement(636822..637730) Staphylococcus epidermidis RP62A 3241354 YP_188228.1 CDS qoxD NC_002976.3 637917 638207 R identified by similarity to SP:P34959; match to protein family HMM PF03626; quinol oxidase, subunit IV complement(637917..638207) Staphylococcus epidermidis RP62A 3242749 YP_188229.1 CDS qoxC NC_002976.3 638204 638809 R identified by similarity to EGAD:6311; match to protein family HMM PF00510; quinol oxidase, subunit III complement(638204..638809) Staphylococcus epidermidis RP62A 3242750 YP_188230.1 CDS qoxA NC_002976.3 638799 640787 R identified by similarity to EGAD:7190; match to protein family HMM PF00115; quinol oxidase, subunit I complement(638799..640787) Staphylococcus epidermidis RP62A 3242751 YP_188231.1 CDS qoxB NC_002976.3 640787 641911 R identified by similarity to SP:P34957; match to protein family HMM PF02790; match to protein family HMM TIGR01432; quinol oxidase, subunit II complement(640787..641911) Staphylococcus epidermidis RP62A 3242752 YP_188232.1 CDS SERP0647 NC_002976.3 642450 642767 R chitinase-related protein complement(642450..642767) Staphylococcus epidermidis RP62A 3242753 YP_188233.1 CDS folD NC_002976.3 643140 644000 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(643140..644000) Staphylococcus epidermidis RP62A 3242754 YP_188234.1 CDS purE NC_002976.3 644205 644687 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 644205..644687 Staphylococcus epidermidis RP62A 3242755 YP_188235.1 CDS purK NC_002976.3 644674 645801 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 644674..645801 Staphylococcus epidermidis RP62A 3240490 YP_188236.1 CDS purC NC_002976.3 645802 646506 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 645802..646506 Staphylococcus epidermidis RP62A 3240491 YP_188237.1 CDS purS NC_002976.3 646506 646766 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 646506..646766 Staphylococcus epidermidis RP62A 3240492 YP_188238.1 CDS purQ NC_002976.3 646768 647439 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 646768..647439 Staphylococcus epidermidis RP62A 3240493 YP_188239.1 CDS purL NC_002976.3 647432 649621 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 647432..649621 Staphylococcus epidermidis RP62A 3240494 YP_188240.1 CDS purF NC_002976.3 649600 651084 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 649600..651084 Staphylococcus epidermidis RP62A 3240495 YP_188241.1 CDS purM NC_002976.3 651077 652108 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 651077..652108 Staphylococcus epidermidis RP62A 3240880 YP_188242.1 CDS purN NC_002976.3 652108 652674 D identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 652108..652674 Staphylococcus epidermidis RP62A 3240881 YP_188243.1 CDS purH NC_002976.3 652691 654169 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 652691..654169 Staphylococcus epidermidis RP62A 3240882 YP_188244.1 CDS purD NC_002976.3 654195 655436 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 654195..655436 Staphylococcus epidermidis RP62A 3240883 YP_188245.1 CDS SERP0660 NC_002976.3 655569 656408 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(655569..656408) Staphylococcus epidermidis RP62A 3240884 YP_188246.1 CDS SERP0661 NC_002976.3 656368 657771 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(656368..657771) Staphylococcus epidermidis RP62A 3240885 YP_188247.1 CDS SERP0662 NC_002976.3 657785 658360 R identified by similarity to OMNI:SA1086; hypothetical protein complement(657785..658360) Staphylococcus epidermidis RP62A 3240893 YP_188248.1 CDS SERP0663 NC_002976.3 658883 660658 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 658883..660658 Staphylococcus epidermidis RP62A 3241128 YP_188249.1 CDS SERP0664 NC_002976.3 660702 660794 D hypothetical protein 660702..660794 Staphylococcus epidermidis RP62A 3241129 YP_188250.1 CDS SERP0665 NC_002976.3 661070 661204 R hypothetical protein complement(661070..661204) Staphylococcus epidermidis RP62A 3241130 YP_188251.1 CDS SERP0666 NC_002976.3 661356 662648 D identified by similarity to OMNI:SA1088; hypothetical protein 661356..662648 Staphylococcus epidermidis RP62A 3241131 YP_188252.1 CDS SERP0667 NC_002976.3 662954 664126 D identified by similarity to OMNI:SA1089; hypothetical protein 662954..664126 Staphylococcus epidermidis RP62A 3241132 YP_188253.1 CDS SERP0668 NC_002976.3 664186 664725 D identified by similarity to OMNI:SA1090; hypothetical protein 664186..664725 Staphylococcus epidermidis RP62A 3241133 YP_188254.1 CDS ptsH NC_002976.3 664881 665147 D identified by similarity to EGAD:6430; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 664881..665147 Staphylococcus epidermidis RP62A 3241134 YP_188255.1 CDS ptsI NC_002976.3 665150 666868 D identified by similarity to SP:P08838; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 665150..666868 Staphylococcus epidermidis RP62A 3241135 YP_188256.1 CDS SERP0671 NC_002976.3 667143 667379 R identified by similarity to OMNI:SA1093; hypothetical protein complement(667143..667379) Staphylococcus epidermidis RP62A 3241144 YP_188257.1 CDS cydA NC_002976.3 667579 668934 D identified by similarity to EGAD:98907; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 667579..668934 Staphylococcus epidermidis RP62A 3241145 YP_188258.1 CDS cydB NC_002976.3 668931 669947 D identified by similarity to GP:4514629; cytochrome d ubiquinol oxidase, subunit II 668931..669947 Staphylococcus epidermidis RP62A 3241146 YP_188259.1 CDS SERP0674 NC_002976.3 670003 670662 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein TrkA 670003..670662 Staphylococcus epidermidis RP62A 3240840 YP_188260.1 CDS SERP0676 NC_002976.3 671644 673326 R identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649; metallo-beta-lactamase complement(671644..673326) Staphylococcus epidermidis RP62A 3240842 YP_188261.1 CDS SERP0677 NC_002976.3 673326 673544 R identified by similarity to OMNI:SA1099; hypothetical protein complement(673326..673544) Staphylococcus epidermidis RP62A 3240843 YP_188262.1 CDS def NC_002976.3 673977 674528 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(673977..674528) Staphylococcus epidermidis RP62A 3240844 YP_188263.1 CDS SERP0679 NC_002976.3 674711 675337 D identified by similarity to OMNI:SA1101; hypothetical protein 674711..675337 Staphylococcus epidermidis RP62A 3240394 YP_188264.1 CDS pdhA NC_002976.3 675508 676620 D identified by similarity to SP:P21881; match to protein family HMM PF00676; pyruvate dehydrogenase complex E1 component, alpha subunit 675508..676620 Staphylococcus epidermidis RP62A 3240395 YP_188265.1 CDS pdhB NC_002976.3 676624 677601 D identified by similarity to SP:P21882; match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase complex E1 component, beta subunit 676624..677601 Staphylococcus epidermidis RP62A 3240396 YP_188266.1 CDS pdhC NC_002976.3 677732 679033 D identified by similarity to EGAD:102440; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 677732..679033 Staphylococcus epidermidis RP62A 3240397 YP_188267.1 CDS pdhD NC_002976.3 679038 680444 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 679038..680444 Staphylococcus epidermidis RP62A 3240398 YP_188268.1 CDS SERP0684 NC_002976.3 680746 681024 D identified by similarity to OMNI:SA1106; match to protein family HMM PF05256; hypothetical protein 680746..681024 Staphylococcus epidermidis RP62A 3241053 YP_188269.1 CDS SERP0685 NC_002976.3 681163 681702 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 681163..681702 Staphylococcus epidermidis RP62A 3241054 YP_188270.1 CDS potA NC_002976.3 681714 682808 D identified by similarity to EGAD:15160; match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 681714..682808 Staphylococcus epidermidis RP62A 3241055 YP_188271.1 CDS potB NC_002976.3 682801 683604 D identified by similarity to EGAD:24120; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 682801..683604 Staphylococcus epidermidis RP62A 3241056 YP_188272.1 CDS potC NC_002976.3 683610 684422 D identified by similarity to EGAD:15490; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC 683610..684422 Staphylococcus epidermidis RP62A 3241057 YP_188273.1 CDS potD NC_002976.3 684419 685492 D identified by similarity to EGAD:16715; match to protein family HMM PF01547; spermidine/putrescine ABC transporter spermidine/putrescine-binding protein 684419..685492 Staphylococcus epidermidis RP62A 3241058 YP_188274.1 CDS SERP0690 NC_002976.3 685561 686712 D identified by similarity to OMNI:SA1112; hypothetical protein 685561..686712 Staphylococcus epidermidis RP62A 3241067 YP_188275.1 CDS SERP0691 NC_002976.3 687017 687553 D identified by similarity to OMNI:NTL01SA0989; hypothetical protein 687017..687553 Staphylococcus epidermidis RP62A 3241068 YP_188276.1 CDS SERP0692 NC_002976.3 687766 689127 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(687766..689127) Staphylococcus epidermidis RP62A 3241069 YP_188277.1 CDS SERP0693 NC_002976.3 689242 689853 R identified by similarity to OMNI:NTL02SA1097; hypothetical protein complement(689242..689853) Staphylococcus epidermidis RP62A 3240740 YP_188278.1 CDS SERP0694 NC_002976.3 690030 690851 D identified by match to protein family HMM PF00459; inositol monophosphatase 690030..690851 Staphylococcus epidermidis RP62A 3240741 YP_188279.1 CDS SERP0695 NC_002976.3 691405 691596 R identified by similarity to OMNI:SA1117; hypothetical protein complement(691405..691596) Staphylococcus epidermidis RP62A 3240742 YP_188280.1 CDS SERP0696 NC_002976.3 691695 693542 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 691695..693542 Staphylococcus epidermidis RP62A 3240743 YP_188281.1 CDS SERP0697 NC_002976.3 693996 695009 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 693996..695009 Staphylococcus epidermidis RP62A 3240744 YP_188282.1 CDS SERP0699 NC_002976.3 696078 696233 R identified by similarity to OMNI:SA1119; hypothetical protein complement(696078..696233) Staphylococcus epidermidis RP62A 3240753 YP_188283.1 CDS SERP0700 NC_002976.3 696235 696717 R identified by similarity to OMNI:SA1120; hypothetical protein complement(696235..696717) Staphylococcus epidermidis RP62A 3240754 YP_188284.1 CDS SERP0701 NC_002976.3 696862 697137 D depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein; hypothetical protein 696862..697137 Staphylococcus epidermidis RP62A 3242112 YP_188285.1 CDS SERP0702 NC_002976.3 697382 697516 R hypothetical protein complement(697382..697516) Staphylococcus epidermidis RP62A 3242113 YP_188286.1 CDS SERP0703 NC_002976.3 697539 698762 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 697539..698762 Staphylococcus epidermidis RP62A 3242114 YP_188287.1 CDS pyc NC_002976.3 699164 702607 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 699164..702607 Staphylococcus epidermidis RP62A 3242115 YP_188288.1 CDS ctaA NC_002976.3 702756 703664 R identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein complement(702756..703664) Staphylococcus epidermidis RP62A 3242116 YP_188289.1 CDS ctaB NC_002976.3 703965 704876 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 703965..704876 Staphylococcus epidermidis RP62A 3241377 YP_188290.1 CDS SERP0707 NC_002976.3 704902 705363 D identified by similarity to OMNI:SA1126; match to protein family HMM PF04238; hypothetical protein 704902..705363 Staphylococcus epidermidis RP62A 3241378 YP_188291.1 CDS SERP0708 NC_002976.3 705805 706857 D identified by similarity to OMNI:NTL01SA1003; hypothetical protein 705805..706857 Staphylococcus epidermidis RP62A 3241379 YP_188292.1 CDS SERP0709 NC_002976.3 706878 707312 D identified by similarity to EGAD:108190; hypothetical protein 706878..707312 Staphylococcus epidermidis RP62A 3241051 YP_188293.1 CDS SERP0710 NC_002976.3 707827 708753 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(707827..708753) Staphylococcus epidermidis RP62A 3241052 YP_188294.1 CDS SERP0711 NC_002976.3 708783 708902 D hypothetical protein 708783..708902 Staphylococcus epidermidis RP62A 3241059 YP_188295.1 CDS SERP0712 NC_002976.3 708974 709225 D identified by similarity to OMNI:SA1131; hypothetical protein 708974..709225 Staphylococcus epidermidis RP62A 3241060 YP_188296.1 CDS SERP0713 NC_002976.3 709235 709624 R identified by similarity to OMNI:SA1132; hypothetical protein complement(709235..709624) Staphylococcus epidermidis RP62A 3241061 YP_188297.1 CDS SERP0714 NC_002976.3 709691 710233 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; hypothetical protein 709691..710233 Staphylococcus epidermidis RP62A 3241062 YP_188298.1 CDS coaD NC_002976.3 710235 710720 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 710235..710720 Staphylococcus epidermidis RP62A 3241063 YP_188299.1 CDS SERP0716 NC_002976.3 711124 712257 R identified by similarity to OMNI:SA1135; match to protein family HMM PF05636; hypothetical protein complement(711124..712257) Staphylococcus epidermidis RP62A 3241064 YP_188300.1 CDS SERP0717 NC_002976.3 712384 712938 D identified by similarity to OMNI:SA1136; match to protein family HMM PF02620; hypothetical protein 712384..712938 Staphylococcus epidermidis RP62A 3241065 YP_188301.1 CDS rpmF NC_002976.3 713016 713189 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 713016..713189 Staphylococcus epidermidis RP62A 3241066 YP_188302.1 CDS SERP0719 NC_002976.3 713669 716143 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(713669..716143) Staphylococcus epidermidis RP62A 3240745 YP_188303.1 CDS SERP0720 NC_002976.3 716482 717222 D identified by match to protein family HMM PF00588; RNA methyltransferase 716482..717222 Staphylococcus epidermidis RP62A 3240746 YP_188304.1 CDS pheS NC_002976.3 717590 718648 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 717590..718648 Staphylococcus epidermidis RP62A 3240747 YP_188305.1 CDS pheT NC_002976.3 718648 721050 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 718648..721050 Staphylococcus epidermidis RP62A 3240748 YP_188306.1 CDS rnhC NC_002976.3 721102 722028 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(721102..722028) Staphylococcus epidermidis RP62A 3240749 YP_188307.1 CDS SERP0724 NC_002976.3 722287 722553 D identified by similarity to OMNI:NTL01SA1025; match to protein family HMM PF05164; hypothetical protein 722287..722553 Staphylococcus epidermidis RP62A 3240750 YP_188308.1 CDS SERP0725 NC_002976.3 722554 723075 D identified by match to protein family HMM PF02674; bacteriocin production protein 722554..723075 Staphylococcus epidermidis RP62A 3240751 YP_188309.1 CDS SERP0726 NC_002976.3 723150 724859 D identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 723150..724859 Staphylococcus epidermidis RP62A 3242117 YP_188310.1 CDS SERP0727 NC_002976.3 724869 727217 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 724869..727217 Staphylococcus epidermidis RP62A 3242118 YP_188311.1 CDS trxA NC_002976.3 727476 727790 D identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 727476..727790 Staphylococcus epidermidis RP62A 3242119 YP_188312.1 CDS uvrC NC_002976.3 727888 729672 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 727888..729672 Staphylococcus epidermidis RP62A 3242120 YP_188313.1 CDS sdhC NC_002976.3 730038 730652 D identified by similarity to EGAD:20778; succinate dehydrogenase, cytochrome b558 subunit 730038..730652 Staphylococcus epidermidis RP62A 3242121 YP_188314.1 CDS sdhA NC_002976.3 730806 732572 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 730806..732572 Staphylococcus epidermidis RP62A 3241368 YP_188315.1 CDS sdhB NC_002976.3 732572 733414 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 732572..733414 Staphylococcus epidermidis RP62A 3241369 YP_188316.1 CDS murI NC_002976.3 733577 734380 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 733577..734380 Staphylococcus epidermidis RP62A 3241370 YP_188317.1 CDS SERP0734 NC_002976.3 734395 734982 D hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 734395..734982 Staphylococcus epidermidis RP62A 3241371 YP_188318.1 CDS SERP0735 NC_002976.3 734975 735484 D identified by match to protein family HMM PF01143; match to protein family HMM TIGR00040; phosphoesterase 734975..735484 Staphylococcus epidermidis RP62A 3241372 YP_188319.1 CDS SERP0736 NC_002976.3 736115 736279 D identified by match to protein family HMM PF05480; phenol soluble modulin beta 1 736115..736279 Staphylococcus epidermidis RP62A 3241373 YP_188320.1 CDS SERP0737 NC_002976.3 736335 736469 D identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 736335..736469 Staphylococcus epidermidis RP62A 3241374 YP_188321.1 CDS SERP0738 NC_002976.3 736521 736655 D identified by match to protein family HMM PF05480; phenol soluble modulin beta 1 736521..736655 Staphylococcus epidermidis RP62A 3241375 YP_188322.1 CDS SERP0739 NC_002976.3 736711 736845 D identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 736711..736845 Staphylococcus epidermidis RP62A 3241376 YP_188323.1 CDS SERP0740 NC_002976.3 736952 737638 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 736952..737638 Staphylococcus epidermidis RP62A 3241384 YP_188324.1 CDS SERP0741 NC_002976.3 737745 738185 R identified by match to protein family HMM PF00583; hypothetical protein complement(737745..738185) Staphylococcus epidermidis RP62A 3241385 YP_188325.1 CDS SERP0742 NC_002976.3 738368 739981 D identified by similarity to OMNI:NTL01SA1060; hypothetical protein 738368..739981 Staphylococcus epidermidis RP62A 3241386 YP_188326.1 CDS mraZ NC_002976.3 740125 740556 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 740125..740556 Staphylococcus epidermidis RP62A 3241387 YP_188327.1 CDS mraW NC_002976.3 740571 741506 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 740571..741506 Staphylococcus epidermidis RP62A 3241388 YP_188328.1 CDS ftsL NC_002976.3 741519 741920 D identified by similarity to EGAD:21242; cell division protein FtsL 741519..741920 Staphylococcus epidermidis RP62A 3241389 YP_188329.1 CDS pbp1 NC_002976.3 741901 744228 D identified by similarity to OMNI:NTL01SA1064; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 1 741901..744228 Staphylococcus epidermidis RP62A 3241390 YP_188330.1 CDS mraY NC_002976.3 744417 745382 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 744417..745382 Staphylococcus epidermidis RP62A 3241391 YP_188331.1 CDS murD NC_002976.3 745384 746733 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 745384..746733 Staphylococcus epidermidis RP62A 3241404 YP_188332.1 CDS SERP0749 NC_002976.3 746749 748140 D identified by similarity to OMNI:SA1197; match to protein family HMM PF03799; cell division protein FtsQ 746749..748140 Staphylococcus epidermidis RP62A 3241405 YP_188333.1 CDS ftsA NC_002976.3 748246 749640 D identified by similarity to SP:O07325; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 748246..749640 Staphylococcus epidermidis RP62A 3241406 YP_188334.1 CDS ftsZ NC_002976.3 749673 750857 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 749673..750857 Staphylococcus epidermidis RP62A 3241407 YP_188335.1 CDS SERP0752 NC_002976.3 751273 752064 D identified by similarity to SP:Q9ZHA4; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 751273..752064 Staphylococcus epidermidis RP62A 3241408 YP_188336.1 CDS SERP0753 NC_002976.3 752090 752758 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 752090..752758 Staphylococcus epidermidis RP62A 3241409 YP_188337.1 CDS ylmF NC_002976.3 752772 753365 D identified by similarity to GP:4009494; match to protein family HMM PF04472; hypothetical protein 752772..753365 Staphylococcus epidermidis RP62A 3241410 YP_188338.1 CDS ylmG NC_002976.3 753377 753667 D identified by match to protein family HMM PF02325; hypothetical protein 753377..753667 Staphylococcus epidermidis RP62A 3241411 YP_188339.1 CDS ylmH NC_002976.3 753923 754585 D identified by similarity to GP:4009496; match to protein family HMM PF01479; hypothetical protein 753923..754585 Staphylococcus epidermidis RP62A 3242824 YP_188340.1 CDS SERP0757 NC_002976.3 754608 755264 D identified by match to protein family HMM PF05103; cell-division initiation protein 754608..755264 Staphylococcus epidermidis RP62A 3242825 YP_188341.1 CDS ileS NC_002976.3 755578 758328 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 755578..758328 Staphylococcus epidermidis RP62A 3242826 YP_188342.1 CDS SERP0759 NC_002976.3 758955 759050 D hypothetical protein 758955..759050 Staphylococcus epidermidis RP62A 3242827 YP_188343.1 CDS SERP0760 NC_002976.3 759097 759894 D glyoxalase 759097..759894 Staphylococcus epidermidis RP62A 3242828 YP_188344.1 CDS SERP0761 NC_002976.3 759899 760369 D identified by match to protein family HMM PF05257; LysM domain-containing protein 759899..760369 Staphylococcus epidermidis RP62A 3242829 YP_188345.1 CDS lspA NC_002976.3 760458 760943 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 760458..760943 Staphylococcus epidermidis RP62A 3242830 YP_188346.1 CDS SERP0763 NC_002976.3 760946 761863 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 760946..761863 Staphylococcus epidermidis RP62A 3242831 YP_188347.1 CDS pyrR NC_002976.3 762165 762692 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 762165..762692 Staphylococcus epidermidis RP62A 3242840 YP_188348.1 CDS uraA NC_002976.3 762940 764232 D identified by similarity to EGAD:18534; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 762940..764232 Staphylococcus epidermidis RP62A 3242841 YP_188349.1 CDS pyrB NC_002976.3 764258 765139 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 764258..765139 Staphylococcus epidermidis RP62A 3242842 YP_188350.1 CDS pyrC NC_002976.3 765157 766434 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 765157..766434 Staphylococcus epidermidis RP62A 3242843 YP_188351.1 CDS carA NC_002976.3 766435 767535 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 766435..767535 Staphylococcus epidermidis RP62A 3242844 YP_188352.1 CDS carB NC_002976.3 767528 770701 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 767528..770701 Staphylococcus epidermidis RP62A 3241392 YP_188353.1 CDS pyrF NC_002976.3 770736 771428 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 770736..771428 Staphylococcus epidermidis RP62A 3241393 YP_188354.1 CDS pyrE NC_002976.3 771429 772040 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 771429..772040 Staphylococcus epidermidis RP62A 3240987 YP_188355.1 CDS SERP0772 NC_002976.3 772066 772272 D identified by similarity to OMNI:SA1218; hypothetical protein 772066..772272 Staphylococcus epidermidis RP62A 3240988 YP_188356.1 CDS SERP0773 NC_002976.3 772548 772682 R hypothetical protein complement(772548..772682) Staphylococcus epidermidis RP62A 3240989 YP_188357.1 CDS SERP0774 NC_002976.3 772813 773220 D identified by similarity to OMNI:SA1219; hypothetical protein 772813..773220 Staphylococcus epidermidis RP62A 3240990 YP_188358.1 CDS fbe NC_002976.3 773283 774980 R identified by similarity to OMNI:SA1220; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin/fibrinogen binding protein complement(773283..774980) Staphylococcus epidermidis RP62A 3240991 YP_188359.1 CDS gmk NC_002976.3 775250 775873 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 775250..775873 Staphylococcus epidermidis RP62A 3240992 YP_188360.1 CDS rpoZ NC_002976.3 775873 776085 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 775873..776085 Staphylococcus epidermidis RP62A 3240993 YP_188361.1 CDS coaBC NC_002976.3 776624 777823 D identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 776624..777823 Staphylococcus epidermidis RP62A 3240994 YP_188362.1 CDS priA NC_002976.3 777823 780231 D identified by similarity to EGAD:98914; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N' 777823..780231 Staphylococcus epidermidis RP62A 3241002 YP_188363.1 CDS SERP0780 NC_002976.3 780337 780540 R identified by similarity to OMNI:SA1226; match to protein family HMM PF05154; hypothetical protein complement(780337..780540) Staphylococcus epidermidis RP62A 3241003 YP_188364.1 CDS def-2 NC_002976.3 780762 781250 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 780762..781250 Staphylococcus epidermidis RP62A 3241004 YP_188365.1 CDS fmt NC_002976.3 781243 782175 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 781243..782175 Staphylococcus epidermidis RP62A 3241559 YP_188366.1 CDS sun NC_002976.3 782172 783479 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 782172..783479 Staphylococcus epidermidis RP62A 3241560 YP_188367.1 CDS SERP0784 NC_002976.3 783482 784576 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 783482..784576 Staphylococcus epidermidis RP62A 3241561 YP_188368.1 CDS SERP0785 NC_002976.3 784583 785326 D identified by match to protein family HMM PF00481; protein phosphatase 2C 784583..785326 Staphylococcus epidermidis RP62A 3241562 YP_188369.1 CDS SERP0786 NC_002976.3 785323 787323 D identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 785323..787323 Staphylococcus epidermidis RP62A 3241563 YP_188370.1 CDS SERP0787 NC_002976.3 787632 788507 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 787632..788507 Staphylococcus epidermidis RP62A 3241572 YP_188371.1 CDS rpe NC_002976.3 788508 789152 D identified by similarity to EGAD:101737; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 788508..789152 Staphylococcus epidermidis RP62A 3241573 YP_188372.1 CDS SERP0789 NC_002976.3 789157 789792 D identified by similarity to EGAD:108271; match to protein family HMM PF04263; match to protein family HMM PF04265; hypothetical protein 789157..789792 Staphylococcus epidermidis RP62A 3241574 YP_188373.1 CDS rpmB NC_002976.3 789876 790064 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(789876..790064) Staphylococcus epidermidis RP62A 3241575 YP_188374.1 CDS SERP0791 NC_002976.3 790422 790796 D identified by similarity to OMNI:SA1239; match to protein family HMM PF03780; hypothetical protein 790422..790796 Staphylococcus epidermidis RP62A 3241576 YP_188375.1 CDS SERP0792 NC_002976.3 790811 792469 D identified by match to protein family HMM PF02734; DAK2 domain-containing protein 790811..792469 Staphylococcus epidermidis RP62A 3241577 YP_188376.1 CDS recG NC_002976.3 792673 794721 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 792673..794721 Staphylococcus epidermidis RP62A 3241380 YP_188377.1 CDS SERP0794 NC_002976.3 794867 795442 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 794867..795442 Staphylococcus epidermidis RP62A 3241381 YP_188378.1 CDS plsX NC_002976.3 795444 796421 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 795444..796421 Staphylococcus epidermidis RP62A 3241382 YP_188379.1 CDS fabD NC_002976.3 796423 797352 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 796423..797352 Staphylococcus epidermidis RP62A 3241383 YP_188380.1 CDS fabG NC_002976.3 797345 798079 D identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM PF00678; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 797345..798079 Staphylococcus epidermidis RP62A 3241396 YP_188381.1 CDS acpP NC_002976.3 798242 798475 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 798242..798475 Staphylococcus epidermidis RP62A 3241397 YP_188382.1 CDS rnc NC_002976.3 798590 799327 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 798590..799327 Staphylococcus epidermidis RP62A 3241398 YP_188383.1 CDS SERP0800 NC_002976.3 799454 803023 D identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR00650; chromosome segregation SMC protein 799454..803023 Staphylococcus epidermidis RP62A 3241399 YP_188384.1 CDS ftsY NC_002976.3 803020 804246 D identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; match to protein family HMM TIGR00961; cell division protein FtsY 803020..804246 Staphylococcus epidermidis RP62A 3241400 YP_188385.1 CDS SERP0802 NC_002976.3 804248 804580 D identified by similarity to OMNI:SA1252; match to protein family HMM PF04297; DNA-binding protein 804248..804580 Staphylococcus epidermidis RP62A 3241401 YP_188386.1 CDS ffh NC_002976.3 804611 805978 D identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 804611..805978 Staphylococcus epidermidis RP62A 3241402 YP_188387.1 CDS rpsP NC_002976.3 806285 806560 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 806285..806560 Staphylococcus epidermidis RP62A 3241403 YP_188388.1 CDS rimM NC_002976.3 806687 807190 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 806687..807190 Staphylococcus epidermidis RP62A 3241412 YP_188389.1 CDS trmD NC_002976.3 807190 807927 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 807190..807927 Staphylococcus epidermidis RP62A 3241413 YP_188390.1 CDS rplS NC_002976.3 808032 808382 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 808032..808382 Staphylococcus epidermidis RP62A 3241414 YP_188391.1 CDS SERP0809 NC_002976.3 811159 813759 R identified by similarity to OMNI:SA1259; hypothetical protein complement(811159..813759) Staphylococcus epidermidis RP62A 3241416 YP_188392.1 CDS SERP0810 NC_002976.3 813903 814067 D hypothetical protein 813903..814067 Staphylococcus epidermidis RP62A 3241417 YP_188393.1 CDS rbgA NC_002976.3 814088 814951 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 814088..814951 Staphylococcus epidermidis RP62A 3241418 YP_188394.1 CDS rnhB NC_002976.3 814956 815726 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 814956..815726 Staphylococcus epidermidis RP62A 3241419 YP_188395.1 CDS sucC NC_002976.3 815834 817000 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 815834..817000 Staphylococcus epidermidis RP62A 3242832 YP_188396.1 CDS sucD NC_002976.3 817022 817930 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 817022..817930 Staphylococcus epidermidis RP62A 3242833 YP_188397.1 CDS SERP0815 NC_002976.3 818735 819607 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA 818735..819607 Staphylococcus epidermidis RP62A 3242834 YP_188398.1 CDS topA NC_002976.3 819790 821859 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 819790..821859 Staphylococcus epidermidis RP62A 3242835 YP_188399.1 CDS SERP0817 NC_002976.3 821884 823191 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 821884..823191 Staphylococcus epidermidis RP62A 3242836 YP_188400.1 CDS xerC NC_002976.3 823416 824306 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerC 823416..824306 Staphylococcus epidermidis RP62A 3242837 YP_188401.1 CDS hslV NC_002976.3 824310 824852 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 824310..824852 Staphylococcus epidermidis RP62A 3242838 YP_188402.1 CDS hslU NC_002976.3 824921 826324 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 824921..826324 Staphylococcus epidermidis RP62A 3242839 YP_188403.1 CDS codY NC_002976.3 826348 827118 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 826348..827118 Staphylococcus epidermidis RP62A 3241394 YP_188404.1 CDS SERP0822 NC_002976.3 827327 827422 D hypothetical protein 827327..827422 Staphylococcus epidermidis RP62A 3241395 YP_188405.1 CDS rpsB NC_002976.3 827481 828269 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 827481..828269 Staphylococcus epidermidis RP62A 3240981 YP_188406.1 CDS tsf NC_002976.3 828421 829299 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 828421..829299 Staphylococcus epidermidis RP62A 3240982 YP_188407.1 CDS pyrH NC_002976.3 829440 830162 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 829440..830162 Staphylococcus epidermidis RP62A 3240983 YP_188408.1 CDS frr NC_002976.3 830179 830733 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 830179..830733 Staphylococcus epidermidis RP62A 3240984 YP_188409.1 CDS uppS NC_002976.3 830954 831724 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 830954..831724 Staphylococcus epidermidis RP62A 3240985 YP_188410.1 CDS cdsA NC_002976.3 831728 832510 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 831728..832510 Staphylococcus epidermidis RP62A 3240986 YP_188411.1 CDS SERP0829 NC_002976.3 832744 834030 D identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; zinc metalloprotease 832744..834030 Staphylococcus epidermidis RP62A 3240995 YP_188412.1 CDS proS NC_002976.3 834049 835752 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 834049..835752 Staphylococcus epidermidis RP62A 3240996 YP_188413.1 CDS polC NC_002976.3 836002 840312 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 836002..840312 Staphylococcus epidermidis RP62A 3240997 YP_188414.1 CDS SERP0832 NC_002976.3 840491 840958 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 840491..840958 Staphylococcus epidermidis RP62A 3240998 YP_188415.1 CDS nusA NC_002976.3 840979 842202 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 840979..842202 Staphylococcus epidermidis RP62A 3240999 YP_188416.1 CDS SERP0834 NC_002976.3 842220 842504 D identified by similarity to OMNI:SA1286; match to protein family HMM PF04296; hypothetical protein 842220..842504 Staphylococcus epidermidis RP62A 3241000 YP_188417.1 CDS SERP0835 NC_002976.3 842504 842821 D identified by match to protein family HMM PF01248; 50S ribosomal protein L7 842504..842821 Staphylococcus epidermidis RP62A 3241001 YP_188418.1 CDS infB NC_002976.3 842826 844988 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 842826..844988 Staphylococcus epidermidis RP62A 3241564 YP_188419.1 CDS rbfA NC_002976.3 845291 845641 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 845291..845641 Staphylococcus epidermidis RP62A 3241565 YP_188420.1 CDS truB NC_002976.3 845779 846696 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 845779..846696 Staphylococcus epidermidis RP62A 3241566 YP_188421.1 CDS ribF NC_002976.3 846712 847683 D identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 846712..847683 Staphylococcus epidermidis RP62A 3241567 YP_188422.1 CDS rpsO NC_002976.3 847803 848072 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 847803..848072 Staphylococcus epidermidis RP62A 3241568 YP_188423.1 CDS pnp NC_002976.3 848204 850309 D identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 848204..850309 Staphylococcus epidermidis RP62A 3241569 YP_188424.1 CDS SERP0842 NC_002976.3 850644 852350 D identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649; metallo-beta-lactamase 850644..852350 Staphylococcus epidermidis RP62A 3241570 YP_188425.1 CDS SERP0843 NC_002976.3 852616 855009 D identified by match to protein family HMM PF01580; DNA translocase FtsK 852616..855009 Staphylococcus epidermidis RP62A 3241571 YP_188426.1 CDS SERP0844 NC_002976.3 855012 855725 D transcriptional regulator 855012..855725 Staphylococcus epidermidis RP62A 3241581 YP_188427.1 CDS SERP0845 NC_002976.3 855756 857027 D identified by similarity to OMNI:NTL01SA1161; match to protein family HMM PF05193; hypothetical protein 855756..857027 Staphylococcus epidermidis RP62A 3241582 YP_188428.1 CDS SERP0846 NC_002976.3 857027 858316 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 857027..858316 Staphylococcus epidermidis RP62A 3241583 YP_188429.1 CDS SERP0847 NC_002976.3 858313 859017 D identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase 858313..859017 Staphylococcus epidermidis RP62A 3241584 YP_188430.1 CDS SERP0848 NC_002976.3 859170 859997 D identified by match to protein family HMM PF01842; ACT domain-containing protein 859170..859997 Staphylococcus epidermidis RP62A 3242629 YP_188431.1 CDS SERP0849 NC_002976.3 860016 860408 D Cro/CI family transcriptional regulator 860016..860408 Staphylococcus epidermidis RP62A 3242630 YP_188432.1 CDS pgsA NC_002976.3 860437 861018 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 860437..861018 Staphylococcus epidermidis RP62A 3242631 YP_188433.1 CDS SERP0851 NC_002976.3 861468 862616 D identified by similarity to EGAD:108567; match to protein family HMM PF00994; match to protein family HMM TIGR00200; competence/damage-inducible protein CinA 861468..862616 Staphylococcus epidermidis RP62A 3242640 YP_188434.1 CDS recA NC_002976.3 862787 863836 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 862787..863836 Staphylococcus epidermidis RP62A 3242641 YP_188435.1 CDS SERP0853 NC_002976.3 864062 865621 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 864062..865621 Staphylococcus epidermidis RP62A 3242642 YP_188436.1 CDS SERP0854 NC_002976.3 865710 865925 R identified by similarity to OMNI:SA1306; hypothetical protein complement(865710..865925) Staphylococcus epidermidis RP62A 3242643 YP_188437.1 CDS SERP0855 NC_002976.3 866089 866883 D identified by similarity to OMNI:SA1307; match to protein family HMM PF00149; match to protein family HMM PF02640; match to protein family HMM TIGR00282; hypothetical protein 866089..866883 Staphylococcus epidermidis RP62A 3242644 YP_188438.1 CDS SERP0856 NC_002976.3 866996 868756 D identified by similarity to EGAD:21889; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase, alpha subunit 866996..868756 Staphylococcus epidermidis RP62A 3242645 YP_188439.1 CDS SERP0857 NC_002976.3 868757 869623 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 868757..869623 Staphylococcus epidermidis RP62A 3242646 YP_188440.1 CDS SERP0858 NC_002976.3 870209 870826 D identified by similarity to EGAD:107468; hypothetical protein 870209..870826 Staphylococcus epidermidis RP62A 3242647 YP_188441.1 CDS SERP0859 NC_002976.3 870883 871173 D identified by similarity to OMNI:SA1310; hypothetical protein 870883..871173 Staphylococcus epidermidis RP62A 3240402 YP_188442.1 CDS miaB NC_002976.3 871516 873060 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 871516..873060 Staphylococcus epidermidis RP62A 3240403 YP_188443.1 CDS SERP0861 NC_002976.3 873062 873427 D identified by similarity to OMNI:SA1313; hypothetical protein 873062..873427 Staphylococcus epidermidis RP62A 3240404 YP_188444.1 CDS SERP0862 NC_002976.3 873451 873945 D identified by similarity to OMNI:SA1314; hypothetical protein 873451..873945 Staphylococcus epidermidis RP62A 3240405 YP_188445.1 CDS hexA NC_002976.3 874143 876764 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 874143..876764 Staphylococcus epidermidis RP62A 3240406 YP_188446.1 CDS mutL NC_002976.3 876779 878716 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 876779..878716 Staphylococcus epidermidis RP62A 3240407 YP_188447.1 CDS glpP NC_002976.3 878730 879263 D identified by similarity to EGAD:18158; match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 878730..879263 Staphylococcus epidermidis RP62A 3240416 YP_188448.1 CDS glpF NC_002976.3 879638 880462 D identified by similarity to EGAD:21817; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 879638..880462 Staphylococcus epidermidis RP62A 3240417 YP_188449.1 CDS glpK NC_002976.3 880616 882115 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 880616..882115 Staphylococcus epidermidis RP62A 3240418 YP_188450.1 CDS glpD NC_002976.3 882292 883965 D identified by similarity to EGAD:18115; match to protein family HMM PF01224; match to protein family HMM PF01266; aerobic glycerol-3-phosphate dehydrogenase 882292..883965 Staphylococcus epidermidis RP62A 3240419 YP_188451.1 CDS SERP0869 NC_002976.3 884189 885115 D alpha/beta hydrolase 884189..885115 Staphylococcus epidermidis RP62A 3240420 YP_188452.1 CDS miaA NC_002976.3 885127 886125 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 885127..886125 Staphylococcus epidermidis RP62A 3240421 YP_188453.1 CDS SERP0871 NC_002976.3 886079 886318 D identified by match to protein family HMM PF01423; match to protein family HMM PF03329; host factor-I protein 886079..886318 Staphylococcus epidermidis RP62A 3240422 YP_188454.1 CDS gpxA-1 NC_002976.3 886540 887016 R identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase complement(886540..887016) Staphylococcus epidermidis RP62A 3241506 YP_188455.1 CDS SERP0873 NC_002976.3 887117 888367 D identified by match to protein family HMM PF04471; GTP-binding protein 887117..888367 Staphylococcus epidermidis RP62A 3241507 YP_188456.1 CDS SERP0874 NC_002976.3 888383 889621 D identified by similarity to OMNI:SA1327; hypothetical protein 888383..889621 Staphylococcus epidermidis RP62A 3241508 YP_188457.1 CDS glnR NC_002976.3 890102 890467 D identified by similarity to EGAD:15799; match to protein family HMM PF00376; glutamine synthetase repressor 890102..890467 Staphylococcus epidermidis RP62A 3241509 YP_188458.1 CDS femC NC_002976.3 890486 891826 D identified by similarity to EGAD:102439; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase FemC 890486..891826 Staphylococcus epidermidis RP62A 3241510 YP_188459.1 CDS SERP0878 NC_002976.3 892406 892645 D portal protein, truncation 892406..892645 Staphylococcus epidermidis RP62A 3241579 YP_188460.1 CDS SERP0879 NC_002976.3 892710 894056 D identified by similarity to OMNI:NTL02SA0882; match to protein family HMM PF04233; match to protein family HMM TIGR01641; hypothetical protein 892710..894056 Staphylococcus epidermidis RP62A 3241580 YP_188461.1 CDS SERP0880 NC_002976.3 894062 894253 D identified by similarity to OMNI:NTL01SA1196; hypothetical protein 894062..894253 Staphylococcus epidermidis RP62A 3242632 YP_188462.1 CDS SERP0882 NC_002976.3 895252 895935 R surface lipoprotein-related protein complement(895252..895935) Staphylococcus epidermidis RP62A 3242634 YP_188463.1 CDS SERP0883 NC_002976.3 896005 897030 R identified by similarity to OMNI:NTL01SA1197; hypothetical protein complement(896005..897030) Staphylococcus epidermidis RP62A 3242635 YP_188464.1 CDS SERP0884 NC_002976.3 897344 897541 D identified by similarity to OMNI:SA1350; hypothetical protein 897344..897541 Staphylococcus epidermidis RP62A 3242636 YP_188465.1 CDS cls-1 NC_002976.3 897599 899071 D identified by match to protein family HMM PF00614; cardiolipin synthetase 897599..899071 Staphylococcus epidermidis RP62A 3242637 YP_188466.1 CDS SERP0886 NC_002976.3 899249 900124 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 899249..900124 Staphylococcus epidermidis RP62A 3242638 YP_188467.1 CDS SERP0887 NC_002976.3 900121 900852 D ABC transporter permease 900121..900852 Staphylococcus epidermidis RP62A 3242639 YP_188468.1 CDS SERP0888 NC_002976.3 900852 901946 D identified by match to protein family HMM PF02518; sensor histidine kinase 900852..901946 Staphylococcus epidermidis RP62A 3242648 YP_188469.1 CDS SERP0889 NC_002976.3 901943 902545 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 901943..902545 Staphylococcus epidermidis RP62A 3242649 YP_188470.1 CDS SERP0890 NC_002976.3 902714 902902 R hypothetical protein complement(902714..902902) Staphylococcus epidermidis RP62A 3242650 YP_188471.1 CDS SERP0891 NC_002976.3 903067 903603 D identified by match to protein family HMM PF00565; thermonuclease precursor family protein 903067..903603 Staphylococcus epidermidis RP62A 3242651 YP_188472.1 CDS SERP0893 NC_002976.3 904340 905212 R identified by similarity to OMNI:SA1358; hypothetical protein complement(904340..905212) Staphylococcus epidermidis RP62A 3242653 YP_188473.1 CDS SERP0894 NC_002976.3 905415 905540 R hypothetical protein complement(905415..905540) Staphylococcus epidermidis RP62A 3242654 YP_188474.1 CDS SERP0895 NC_002976.3 905539 906138 D identified by similarity to GP:14247097; hypothetical protein 905539..906138 Staphylococcus epidermidis RP62A 3240401 YP_188475.1 CDS SERP0896 NC_002976.3 906216 907592 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(906216..907592) Staphylococcus epidermidis RP62A 3240408 YP_188476.1 CDS hom NC_002976.3 907781 909061 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 907781..909061 Staphylococcus epidermidis RP62A 3240409 YP_188477.1 CDS thrC NC_002976.3 909067 910131 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 909067..910131 Staphylococcus epidermidis RP62A 3240410 YP_188478.1 CDS thrB NC_002976.3 910133 911053 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 910133..911053 Staphylococcus epidermidis RP62A 3240411 YP_188479.1 CDS SERP0900 NC_002976.3 911116 911922 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase 911116..911922 Staphylococcus epidermidis RP62A 3240412 YP_188480.1 CDS SERP0901 NC_002976.3 912254 912568 R identified by similarity to OMNI:SA1366; hypothetical protein complement(912254..912568) Staphylococcus epidermidis RP62A 3240413 YP_188481.1 CDS SERP0902 NC_002976.3 912874 914322 R identified by match to protein family HMM PF00324; amino acid permease complement(912874..914322) Staphylococcus epidermidis RP62A 3240414 YP_188482.1 CDS katA NC_002976.3 914553 916067 D identified by similarity to GP:7161885; match to protein family HMM PF00199; catalase 914553..916067 Staphylococcus epidermidis RP62A 3240415 YP_188483.1 CDS rpmG NC_002976.3 916157 916306 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 916157..916306 Staphylococcus epidermidis RP62A 3240423 YP_188484.1 CDS rpsN NC_002976.3 916473 916742 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 916473..916742 Staphylococcus epidermidis RP62A 3240424 YP_188485.1 CDS guaC NC_002976.3 916896 917873 D identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 916896..917873 Staphylococcus epidermidis RP62A 3240425 YP_188486.1 CDS SERP0907 NC_002976.3 917887 918912 D identified by similarity to OMNI:NTL01SA1219; match to protein family HMM PF00188; hypothetical protein 917887..918912 Staphylococcus epidermidis RP62A 3240426 YP_188487.1 CDS SERP0908 NC_002976.3 918967 919068 D hypothetical protein 918967..919068 Staphylococcus epidermidis RP62A 3240427 YP_188488.1 CDS lexA NC_002976.3 919266 919886 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(919266..919886) Staphylococcus epidermidis RP62A 3241503 YP_188489.1 CDS SERP0910 NC_002976.3 920030 920263 D identified by similarity to OMNI:SA1375; hypothetical protein 920030..920263 Staphylococcus epidermidis RP62A 3241504 YP_188490.1 CDS SERP0911 NC_002976.3 920424 920660 D identified by similarity to OMNI:SA1376; hypothetical protein 920424..920660 Staphylococcus epidermidis RP62A 3241505 YP_188491.1 CDS tkt NC_002976.3 920892 922880 D identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 920892..922880 Staphylococcus epidermidis RP62A 3241514 YP_188492.1 CDS SERP0913 NC_002976.3 922929 923051 D hypothetical protein 922929..923051 Staphylococcus epidermidis RP62A 3241515 YP_188493.1 CDS SERP0914 NC_002976.3 923087 923314 D identified by match to protein family HMM PF03672; hypothetical protein 923087..923314 Staphylococcus epidermidis RP62A 3241516 YP_188494.1 CDS SERP0915 NC_002976.3 923527 924699 D identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 923527..924699 Staphylococcus epidermidis RP62A 3241517 YP_188495.1 CDS SERP0916 NC_002976.3 924878 925345 D identified by similarity to OMNI:SA1380; hypothetical protein 924878..925345 Staphylococcus epidermidis RP62A 3241518 YP_188496.1 CDS sbcD NC_002976.3 925453 926577 D identified by similarity to EGAD:9310; match to protein family HMM PF00149; match to protein family HMM PF02549; match to protein family HMM TIGR00619; exonuclease SbcD 925453..926577 Staphylococcus epidermidis RP62A 3241519 YP_188497.1 CDS sbcC NC_002976.3 926581 929610 D identified by similarity to EGAD:7288; exonuclease SbcC 926581..929610 Staphylococcus epidermidis RP62A 3241520 YP_188498.1 CDS mscL NC_002976.3 929728 930078 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(929728..930078) Staphylococcus epidermidis RP62A 3241521 YP_188499.1 CDS SERP0920 NC_002976.3 930290 931930 D identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 930290..931930 Staphylococcus epidermidis RP62A 3241522 YP_188500.1 CDS acnA NC_002976.3 932351 935056 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 932351..935056 Staphylococcus epidermidis RP62A 3241530 YP_188501.1 CDS SERP0922 NC_002976.3 935179 935646 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 935179..935646 Staphylococcus epidermidis RP62A 3241531 YP_188502.1 CDS SERP0923 NC_002976.3 935697 935993 R identified by similarity to OMNI:SA1387; hypothetical protein complement(935697..935993) Staphylococcus epidermidis RP62A 3241532 YP_188503.1 CDS SERP0924 NC_002976.3 936237 936845 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein complement(936237..936845) Staphylococcus epidermidis RP62A 3241533 YP_188504.1 CDS parE NC_002976.3 937049 939049 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 937049..939049 Staphylococcus epidermidis RP62A 3241534 YP_188505.1 CDS parC NC_002976.3 939046 941448 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 939046..941448 Staphylococcus epidermidis RP62A 3242053 YP_188506.1 CDS SERP0927 NC_002976.3 941660 943117 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 941660..943117 Staphylococcus epidermidis RP62A 3242054 YP_188507.1 CDS SERP0928 NC_002976.3 943312 944160 D identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123; transcriptional antiterminator LicT 943312..944160 Staphylococcus epidermidis RP62A 3242055 YP_188508.1 CDS SERP0929 NC_002976.3 944306 945523 D identified by similarity to OMNI:SA1395; match to protein family HMM PF01594; hypothetical protein 944306..945523 Staphylococcus epidermidis RP62A 3242064 YP_188509.1 CDS fmtC NC_002976.3 945777 948299 D identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; fmtC protein 945777..948299 Staphylococcus epidermidis RP62A 3242065 YP_188510.1 CDS msrA-1 NC_002976.3 948493 949008 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(948493..949008) Staphylococcus epidermidis RP62A 3242066 YP_188511.1 CDS SERP0932 NC_002976.3 949144 950133 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 949144..950133 Staphylococcus epidermidis RP62A 3242067 YP_188512.1 CDS dmpI NC_002976.3 950674 950859 R identified by similarity to SP:Q01468; match to protein family HMM PF01361; match to protein family HMM TIGR00013; 4-oxalocrotonate tautomerase complement(950674..950859) Staphylococcus epidermidis RP62A 3242069 YP_188513.1 CDS SERP0935 NC_002976.3 951003 952265 D identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 951003..952265 Staphylococcus epidermidis RP62A 3242070 YP_188514.1 CDS tyrA NC_002976.3 952337 953425 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(952337..953425) Staphylococcus epidermidis RP62A 3242071 YP_188515.1 CDS trpE NC_002976.3 954084 955490 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 954084..955490 Staphylococcus epidermidis RP62A 3242080 YP_188516.1 CDS trpG NC_002976.3 955487 956053 D identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 955487..956053 Staphylococcus epidermidis RP62A 3242081 YP_188517.1 CDS trpD NC_002976.3 956056 957051 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 956056..957051 Staphylococcus epidermidis RP62A 3242082 YP_188518.1 CDS trpC NC_002976.3 957055 957843 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 957055..957843 Staphylococcus epidermidis RP62A 3242083 YP_188519.1 CDS trpF NC_002976.3 957833 958456 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 957833..958456 Staphylococcus epidermidis RP62A 3242084 YP_188520.1 CDS trpB NC_002976.3 958460 959668 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 958460..959668 Staphylococcus epidermidis RP62A 3242085 YP_188521.1 CDS trpA NC_002976.3 959661 960392 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 959661..960392 Staphylococcus epidermidis RP62A 3242086 YP_188522.1 CDS SERP0944 NC_002976.3 960583 961242 D identified by match to protein family HMM PF01965; ThiJ/PfpI family protein 960583..961242 Staphylococcus epidermidis RP62A 3242010 YP_188523.1 CDS SERP0945 NC_002976.3 961418 961540 D hypothetical protein 961418..961540 Staphylococcus epidermidis RP62A 3242011 YP_188524.1 CDS femA NC_002976.3 961515 962768 D identified by similarity to EGAD:29547; match to protein family HMM PF02388; femA protein 961515..962768 Staphylococcus epidermidis RP62A 3242012 YP_188525.1 CDS femB NC_002976.3 962794 964047 D identified by similarity to EGAD:29548; match to protein family HMM PF02388; femB protein 962794..964047 Staphylococcus epidermidis RP62A 3242013 YP_188526.1 CDS SERP0948 NC_002976.3 965066 965830 D hydrolase-related protein 965066..965830 Staphylococcus epidermidis RP62A 3242014 YP_188527.1 CDS SERP0949 NC_002976.3 965895 966905 D identified by match to protein family HMM PF01497; transferrin receptor 965895..966905 Staphylococcus epidermidis RP62A 3242015 YP_188528.1 CDS SERP0950 NC_002976.3 967035 967730 R identified by similarity to EGAD:89055; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(967035..967730) Staphylococcus epidermidis RP62A 3242016 YP_188529.1 CDS SERP0951 NC_002976.3 967733 968509 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(967733..968509) Staphylococcus epidermidis RP62A 3242017 YP_188530.1 CDS SERP0952 NC_002976.3 968472 969326 R identified by similarity to EGAD:9991; match to protein family HMM PF00528; peptide ABC transporter permease complement(968472..969326) Staphylococcus epidermidis RP62A 3242018 YP_188531.1 CDS SERP0953 NC_002976.3 969316 970317 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(969316..970317) Staphylococcus epidermidis RP62A 3242027 YP_188532.1 CDS SERP0954 NC_002976.3 970496 970834 R identified by similarity to OMNI:SA1418; hypothetical protein complement(970496..970834) Staphylococcus epidermidis RP62A 3242028 YP_188533.1 CDS SERP0955 NC_002976.3 971082 972893 D identified by similarity to EGAD:13184; match to protein family HMM PF01432; oligoendopeptidase F 971082..972893 Staphylococcus epidermidis RP62A 3242029 YP_188534.1 CDS SERP0956 NC_002976.3 972986 973633 R identified by similarity to EGAD:14202; match to protein family HMM PF01895; phosphate transport system regulatory protein PhoU complement(972986..973633) Staphylococcus epidermidis RP62A 3242030 YP_188535.1 CDS SERP0957 NC_002976.3 973640 974515 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(973640..974515) Staphylococcus epidermidis RP62A 3242031 YP_188536.1 CDS SERP0958 NC_002976.3 974603 975508 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(974603..975508) Staphylococcus epidermidis RP62A 3242032 YP_188537.1 CDS SERP0959 NC_002976.3 975510 976436 R identified by match to protein family HMM PF00528; phosphate ABC transporter permease complement(975510..976436) Staphylococcus epidermidis RP62A 3242033 YP_188538.1 CDS SERP0960 NC_002976.3 976643 977620 R identified by match to protein family HMM PF01449; match to protein family HMM PF01547; phosphate ABC transporter phosphate-binding protein complement(976643..977620) Staphylococcus epidermidis RP62A 3242050 YP_188539.1 CDS SERP0961 NC_002976.3 978238 979134 R identified by similarity to OMNI:NTL01SA1271; hypothetical protein complement(978238..979134) Staphylococcus epidermidis RP62A 3241511 YP_188540.1 CDS SERP0962 NC_002976.3 979345 980952 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 979345..980952 Staphylococcus epidermidis RP62A 3241512 YP_188541.1 CDS lysC NC_002976.3 981561 982763 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 981561..982763 Staphylococcus epidermidis RP62A 3241513 YP_188542.1 CDS asd NC_002976.3 982834 983823 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 982834..983823 Staphylococcus epidermidis RP62A 3241523 YP_188543.1 CDS dapA NC_002976.3 983825 984709 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 983825..984709 Staphylococcus epidermidis RP62A 3241524 YP_188544.1 CDS dapB NC_002976.3 984709 985431 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 984709..985431 Staphylococcus epidermidis RP62A 3241525 YP_188545.1 CDS dapD NC_002976.3 985453 986175 D identified by match to protein family HMM PF00132; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 985453..986175 Staphylococcus epidermidis RP62A 3241526 YP_188546.1 CDS SERP0968 NC_002976.3 986332 987483 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase 986332..987483 Staphylococcus epidermidis RP62A 3241527 YP_188547.1 CDS SERP0969 NC_002976.3 987489 988562 D identified by similarity to GP:11991216; match to protein family HMM PF00842; match to protein family HMM PF01168; alanine racemase 987489..988562 Staphylococcus epidermidis RP62A 3241528 YP_188548.1 CDS lysA NC_002976.3 988563 989828 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 988563..989828 Staphylococcus epidermidis RP62A 3241529 YP_188549.1 CDS SERP0971 NC_002976.3 990377 990589 D hypothetical protein 990377..990589 Staphylococcus epidermidis RP62A 3242056 YP_188550.1 CDS SERP0972 NC_002976.3 990579 990812 R identified by match to protein family HMM PF00313; CSD family cold shock protein complement(990579..990812) Staphylococcus epidermidis RP62A 3242057 YP_188551.1 CDS SERP0973 NC_002976.3 990960 991268 R identified by similarity to OMNI:SA1438; hypothetical protein complement(990960..991268) Staphylococcus epidermidis RP62A 3242058 YP_188552.1 CDS SERP0974 NC_002976.3 991427 991696 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 991427..991696 Staphylococcus epidermidis RP62A 3242059 YP_188553.1 CDS SERP0975 NC_002976.3 991736 992362 D identified by similarity to EGAD:19663; xpaC protein 991736..992362 Staphylococcus epidermidis RP62A 3242060 YP_188554.1 CDS SERP0976 NC_002976.3 992385 993515 D identified by match to protein family HMM PF05816; tellurite resistance protein 992385..993515 Staphylococcus epidermidis RP62A 3242061 YP_188555.1 CDS brnQ-1 NC_002976.3 993591 994934 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid ABC transporter substrate-binding protein complement(993591..994934) Staphylococcus epidermidis RP62A 3242062 YP_188556.1 CDS SERP0978 NC_002976.3 995121 997010 R identified by similarity to OMNI:SA1444; hypothetical protein complement(995121..997010) Staphylococcus epidermidis RP62A 3242063 YP_188557.1 CDS SERP0979 NC_002976.3 997023 997814 R CbbQ/NirQ/NorQ/GpvN family protein complement(997023..997814) Staphylococcus epidermidis RP62A 3242072 YP_188558.1 CDS SERP0980 NC_002976.3 997992 998195 R identified by similarity to OMNI:SA1446; hypothetical protein complement(997992..998195) Staphylococcus epidermidis RP62A 3242073 YP_188559.1 CDS SERP0981 NC_002976.3 998220 999029 R identified by similarity to OMNI:SA1447; hypothetical protein complement(998220..999029) Staphylococcus epidermidis RP62A 3242074 YP_188560.1 CDS SERP0982 NC_002976.3 999229 999402 D hypothetical protein 999229..999402 Staphylococcus epidermidis RP62A 3242075 YP_188561.1 CDS SERP0983 NC_002976.3 999534 1000235 R hypothetical protein complement(999534..1000235) Staphylococcus epidermidis RP62A 3242076 YP_188562.1 CDS SERP0984 NC_002976.3 1000232 1001062 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1000232..1001062) Staphylococcus epidermidis RP62A 3242077 YP_188563.1 CDS sucB NC_002976.3 1001204 1002466 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1001204..1002466) Staphylococcus epidermidis RP62A 3242078 YP_188564.1 CDS sucA NC_002976.3 1002485 1005289 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(1002485..1005289) Staphylococcus epidermidis RP62A 3242079 YP_188565.1 CDS SERP0987 NC_002976.3 1005308 1005418 D hypothetical protein 1005308..1005418 Staphylococcus epidermidis RP62A 3242087 YP_188566.1 CDS arlS NC_002976.3 1005701 1007071 R identified by similarity to OMNI:SA1450; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase ArlS complement(1005701..1007071) Staphylococcus epidermidis RP62A 3242088 YP_188567.1 CDS arlR NC_002976.3 1007068 1007727 R identified by similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ArlR complement(1007068..1007727) Staphylococcus epidermidis RP62A 3242089 YP_188568.1 CDS SERP0991 NC_002976.3 1008383 1009396 R RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase complement(1008383..1009396) Staphylococcus epidermidis RP62A 3242091 YP_188569.1 CDS SERP0992 NC_002976.3 1009969 1010583 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1009969..1010583) Staphylococcus epidermidis RP62A 3242092 YP_188570.1 CDS murG NC_002976.3 1010596 1011669 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1010596..1011669) Staphylococcus epidermidis RP62A 3242009 YP_188571.1 CDS SERP0994 NC_002976.3 1011687 1012190 R identified by match to protein family HMM PF00583; acetyltransferase complement(1011687..1012190) Staphylococcus epidermidis RP62A 3242019 YP_188572.1 CDS SERP0995 NC_002976.3 1012226 1012342 D hypothetical protein 1012226..1012342 Staphylococcus epidermidis RP62A 3242020 YP_188573.1 CDS SERP0996 NC_002976.3 1012526 1014001 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(1012526..1014001) Staphylococcus epidermidis RP62A 3242021 YP_188574.1 CDS SERP0997 NC_002976.3 1014346 1014570 R identified by similarity to OMNI:SA1456; hypothetical protein complement(1014346..1014570) Staphylococcus epidermidis RP62A 3242022 YP_188575.1 CDS SERP0998 NC_002976.3 1014570 1015070 R identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component complement(1014570..1015070) Staphylococcus epidermidis RP62A 3242023 YP_188576.1 CDS msrB NC_002976.3 1015083 1015511 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1015083..1015511) Staphylococcus epidermidis RP62A 3242024 YP_188577.1 CDS msrA-2 NC_002976.3 1015508 1016032 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1015508..1016032) Staphylococcus epidermidis RP62A 3242025 YP_188578.1 CDS SERP1001 NC_002976.3 1016135 1016983 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(1016135..1016983) Staphylococcus epidermidis RP62A 3242026 YP_188579.1 CDS folA-1 NC_002976.3 1016993 1017478 R identified by similarity to EGAD:43004; match to protein family HMM PF00186; dihydrofolate reductase complement(1016993..1017478) Staphylococcus epidermidis RP62A 3242034 YP_188580.1 CDS thyA NC_002976.3 1017520 1018476 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1017520..1018476) Staphylococcus epidermidis RP62A 3242035 YP_188581.1 CDS SERP1004 NC_002976.3 1018790 1019452 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1018790..1019452) Staphylococcus epidermidis RP62A 3242036 YP_188582.1 CDS SERP1005 NC_002976.3 1019468 1020517 R identified by match to protein family HMM PF02687; ABC transporter permease complement(1019468..1020517) Staphylococcus epidermidis RP62A 3242037 YP_188583.1 CDS SERP1006 NC_002976.3 1020729 1021166 R identified by similarity to OMNI:SA1464; hypothetical protein complement(1020729..1021166) Staphylococcus epidermidis RP62A 3242038 YP_188584.1 CDS SERP1007 NC_002976.3 1021218 1021478 R identified by similarity to OMNI:SA1466; hypothetical protein complement(1021218..1021478) Staphylococcus epidermidis RP62A 3242039 YP_188585.1 CDS SERP1008 NC_002976.3 1021490 1021684 R identified by similarity to OMNI:SA1467; hypothetical protein complement(1021490..1021684) Staphylococcus epidermidis RP62A 3242040 YP_188586.1 CDS SERP1009 NC_002976.3 1021935 1022639 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1021935..1022639 Staphylococcus epidermidis RP62A 3242041 YP_188587.1 CDS SERP1010 NC_002976.3 1022964 1023359 D identified by similarity to EGAD:17851; match to protein family HMM PF00075; cell wall enzyme EbsB 1022964..1023359 Staphylococcus epidermidis RP62A 3242042 YP_188588.1 CDS ebh NC_002976.3 1023531 1054142 R identified by similarity to OMNI:SA1472; match to protein family HMM PF01468; match to protein family HMM PF02370; match to protein family HMM PF02524; match to protein family HMM PF04508; match to protein family HMM PF04650; match to protein family HMM TIGR01168; cell wall associated fibronectin-binding protein complement(1023531..1054142) Staphylococcus epidermidis RP62A 3240445 YP_188589.1 CDS SERP1012 NC_002976.3 1054324 1055202 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; 5'-3' exonuclease complement(1054324..1055202) Staphylococcus epidermidis RP62A 3242043 YP_188590.1 CDS SERP1013 NC_002976.3 1055221 1058658 R identified by similarity to OMNI:NTL01SA1323; hypothetical protein complement(1055221..1058658) Staphylococcus epidermidis RP62A 3242044 YP_188591.1 CDS SERP1014 NC_002976.3 1059035 1059673 R identified by similarity to OMNI:NTL01XF01748; hypothetical protein complement(1059035..1059673) Staphylococcus epidermidis RP62A 3242045 YP_188592.1 CDS SERP1015 NC_002976.3 1059841 1060977 R identified by similarity to OMNI:NTL01SA1326; match to protein family HMM PF01170; hypothetical protein complement(1059841..1060977) Staphylococcus epidermidis RP62A 3242046 YP_188593.1 CDS SERP1016 NC_002976.3 1061620 1061958 R identified by similarity to OMNI:SA1484; match to protein family HMM PF05103; hypothetical protein complement(1061620..1061958) Staphylococcus epidermidis RP62A 3242047 YP_188594.1 CDS SERP1017 NC_002976.3 1061972 1062538 R identified by similarity to OMNI:SA1485; hypothetical protein complement(1061972..1062538) Staphylococcus epidermidis RP62A 3242048 YP_188595.1 CDS SERP1018 NC_002976.3 1062550 1062882 R identified by similarity to OMNI:NTL01SA1330; hypothetical protein complement(1062550..1062882) Staphylococcus epidermidis RP62A 3242049 YP_188596.1 CDS recU NC_002976.3 1063223 1063852 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1063223..1063852 Staphylococcus epidermidis RP62A 3240684 YP_188597.1 CDS pbp2 NC_002976.3 1063849 1066080 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 2 1063849..1066080 Staphylococcus epidermidis RP62A 3240685 YP_188598.1 CDS SERP1021 NC_002976.3 1066270 1066602 R identified by similarity to OMNI:SA1491; hypothetical protein complement(1066270..1066602) Staphylococcus epidermidis RP62A 3240686 YP_188599.1 CDS nth NC_002976.3 1066607 1067266 R identified by similarity to EGAD:24337; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1066607..1067266) Staphylococcus epidermidis RP62A 3240687 YP_188600.1 CDS SERP1023 NC_002976.3 1067256 1067942 R identified by similarity to EGAD:16577; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD complement(1067256..1067942) Staphylococcus epidermidis RP62A 3240688 YP_188601.1 CDS asnC NC_002976.3 1068035 1069327 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1068035..1069327) Staphylococcus epidermidis RP62A 3240689 YP_188602.1 CDS SERP1025 NC_002976.3 1069448 1072156 R identified by similarity to EGAD:37750; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG complement(1069448..1072156) Staphylococcus epidermidis RP62A 3240690 YP_188603.1 CDS birA NC_002976.3 1072181 1073152 R identified by similarity to EGAD:30996; match to protein family HMM PF01317; match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein complement(1072181..1073152) Staphylococcus epidermidis RP62A 3240691 YP_188604.1 CDS papS NC_002976.3 1073139 1074341 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(1073139..1074341) Staphylococcus epidermidis RP62A 3240700 YP_188605.1 CDS SERP1028 NC_002976.3 1074331 1075473 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(1074331..1075473) Staphylococcus epidermidis RP62A 3240701 YP_188606.1 CDS SERP1029 NC_002976.3 1075495 1075812 R identified by similarity to OMNI:SA1499; match to protein family HMM PF03819; hypothetical protein complement(1075495..1075812) Staphylococcus epidermidis RP62A 3240702 YP_188607.1 CDS SERP1030 NC_002976.3 1075993 1076688 R identified by similarity to OMNI:SA1500; match to protein family HMM PF04298; hypothetical protein complement(1075993..1076688) Staphylococcus epidermidis RP62A 3240703 YP_188608.1 CDS SERP1031 NC_002976.3 1076733 1077326 R identified by similarity to OMNI:SA1501; hypothetical protein complement(1076733..1077326) Staphylococcus epidermidis RP62A 3240704 YP_188609.1 CDS SERP1032 NC_002976.3 1077338 1077901 R identified by similarity to OMNI:NTL01SA1344; hypothetical protein complement(1077338..1077901) Staphylococcus epidermidis RP62A 3240705 YP_188610.1 CDS SERP1033 NC_002976.3 1077915 1079159 R identified by similarity to OMNI:NTL01SA1345; hypothetical protein complement(1077915..1079159) Staphylococcus epidermidis RP62A 3240706 YP_188611.1 CDS aroA NC_002976.3 1079163 1080464 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1079163..1080464) Staphylococcus epidermidis RP62A 3240707 YP_188612.1 CDS aroB NC_002976.3 1080474 1081538 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1080474..1081538) Staphylococcus epidermidis RP62A 3240715 YP_188613.1 CDS aroC NC_002976.3 1081566 1082732 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1081566..1082732) Staphylococcus epidermidis RP62A 3240716 YP_188614.1 CDS ndk NC_002976.3 1083213 1083662 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1083213..1083662) Staphylococcus epidermidis RP62A 3240717 YP_188615.1 CDS SERP1038 NC_002976.3 1083802 1084761 R identified by match to protein family HMM PF00348; polyprenyl synthetase complement(1083802..1084761) Staphylococcus epidermidis RP62A 3240718 YP_188616.1 CDS ubiE NC_002976.3 1084763 1085488 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1084763..1085488) Staphylococcus epidermidis RP62A 3240719 YP_188617.1 CDS SERP1040 NC_002976.3 1085481 1086059 R identified by similarity to OMNI:SA1512; hypothetical protein complement(1085481..1086059) Staphylococcus epidermidis RP62A 3242760 YP_188618.1 CDS hup NC_002976.3 1086529 1086801 R identified by similarity to EGAD:8587; match to protein family HMM PF00216; DNA-binding protein HU complement(1086529..1086801) Staphylococcus epidermidis RP62A 3242761 YP_188619.1 CDS gpsA NC_002976.3 1086972 1087970 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1086972..1087970) Staphylococcus epidermidis RP62A 3242762 YP_188620.1 CDS engA NC_002976.3 1087991 1089301 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1087991..1089301) Staphylococcus epidermidis RP62A 3242777 YP_188621.1 CDS rpsA NC_002976.3 1089517 1090695 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1089517..1090695) Staphylococcus epidermidis RP62A 3242778 YP_188622.1 CDS cmk NC_002976.3 1091179 1091826 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1091179..1091826) Staphylococcus epidermidis RP62A 3242779 YP_188623.1 CDS ansA NC_002976.3 1091905 1092873 D identified by similarity to EGAD:8552; match to protein family HMM PF00710; L-asparaginase 1091905..1092873 Staphylococcus epidermidis RP62A 3242051 YP_188624.1 CDS SERP1047 NC_002976.3 1093085 1094071 R identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase family protein complement(1093085..1094071) Staphylococcus epidermidis RP62A 3242052 YP_188625.1 CDS SERP1048 NC_002976.3 1094204 1095586 R identified by match to protein family HMM PF01476; elastin binding protein complement(1094204..1095586) Staphylococcus epidermidis RP62A 3240679 YP_188626.1 CDS recQ-2 NC_002976.3 1095743 1097122 R identified by similarity to EGAD:37724; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ complement(1095743..1097122) Staphylococcus epidermidis RP62A 3240680 YP_188627.1 CDS SERP1050 NC_002976.3 1097109 1098071 R identified by similarity to OMNI:NTL01SA1365; hypothetical protein complement(1097109..1098071) Staphylococcus epidermidis RP62A 3240681 YP_188628.1 CDS fer NC_002976.3 1098180 1098428 D identified by similarity to SP:P50727; ferredoxin 1098180..1098428 Staphylococcus epidermidis RP62A 3240682 YP_188629.1 CDS SERP1052 NC_002976.3 1098520 1098624 R hypothetical protein complement(1098520..1098624) Staphylococcus epidermidis RP62A 3240683 YP_188630.1 CDS SERP1053 NC_002976.3 1098833 1099372 R identified by similarity to OMNI:SA1526; hypothetical protein complement(1098833..1099372) Staphylococcus epidermidis RP62A 3240692 YP_188631.1 CDS srrB NC_002976.3 1099964 1101733 R identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SrrB complement(1099964..1101733) Staphylococcus epidermidis RP62A 3240693 YP_188632.1 CDS srrA NC_002976.3 1101714 1102439 R identified by similarity to EGAD:14175; similarity to OMNI:SA1535; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SrrA complement(1101714..1102439) Staphylococcus epidermidis RP62A 3240694 YP_188633.1 CDS rluB NC_002976.3 1102573 1103310 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase complement(1102573..1103310) Staphylococcus epidermidis RP62A 3240695 YP_188634.1 CDS scpB NC_002976.3 1103303 1103845 R identified by similarity to OMNI:SA1537; match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B complement(1103303..1103845) Staphylococcus epidermidis RP62A 3240696 YP_188635.1 CDS scpA NC_002976.3 1103838 1104569 R identified by similarity to OMNI:NTL01SA1377; match to protein family HMM PF02616; segregation and condensation protein A complement(1103838..1104569) Staphylococcus epidermidis RP62A 3240697 YP_188636.1 CDS SERP1059 NC_002976.3 1104667 1105191 D identified by similarity to OMNI:SA1539; match to protein family HMM PF03745; hypothetical protein 1104667..1105191 Staphylococcus epidermidis RP62A 3240698 YP_188637.1 CDS xerD NC_002976.3 1105244 1106131 R identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD complement(1105244..1106131) Staphylococcus epidermidis RP62A 3240699 YP_188638.1 CDS SERP1061 NC_002976.3 1106174 1106623 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1106174..1106623) Staphylococcus epidermidis RP62A 3240708 YP_188639.1 CDS SERP1062 NC_002976.3 1106728 1107270 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1106728..1107270) Staphylococcus epidermidis RP62A 3240709 YP_188640.1 CDS SERP1063 NC_002976.3 1107353 1108261 D identified by match to protein family HMM PF00248; aldo/keto reductase 1107353..1108261 Staphylococcus epidermidis RP62A 3240710 YP_188641.1 CDS SERP1064 NC_002976.3 1108484 1109242 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(1108484..1109242) Staphylococcus epidermidis RP62A 3240711 YP_188642.1 CDS proC NC_002976.3 1109403 1110218 D identified by match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1109403..1110218 Staphylococcus epidermidis RP62A 3240712 YP_188643.1 CDS SERP1066 NC_002976.3 1110268 1111188 R identified by match to protein family HMM PF00753; AtsA/ElaC family protein complement(1110268..1111188) Staphylococcus epidermidis RP62A 3240713 YP_188644.1 CDS zwf-2 NC_002976.3 1111612 1113096 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1111612..1113096 Staphylococcus epidermidis RP62A 3240714 YP_188645.1 CDS SERP1068 NC_002976.3 1113125 1113220 D hypothetical protein 1113125..1113220 Staphylococcus epidermidis RP62A 3242763 YP_188646.1 CDS SERP1069 NC_002976.3 1113297 1114178 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1113297..1114178 Staphylococcus epidermidis RP62A 3242764 YP_188647.1 CDS malA NC_002976.3 1114441 1116096 R identified by match to protein family HMM PF00128; alpha-glucosidase complement(1114441..1116096) Staphylococcus epidermidis RP62A 3242765 YP_188648.1 CDS gnd NC_002976.3 1116266 1117672 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1116266..1117672) Staphylococcus epidermidis RP62A 3242766 YP_188649.1 CDS SERP1072 NC_002976.3 1117752 1118876 R identified by similarity to SP:P26311; match to protein family HMM PF01546; match to protein family HMM TIGR01883; peptidase T-like protein complement(1117752..1118876) Staphylococcus epidermidis RP62A 3242767 YP_188650.1 CDS SERP1073 NC_002976.3 1119107 1119202 D hypothetical protein 1119107..1119202 Staphylococcus epidermidis RP62A 3242768 YP_188651.1 CDS SERP1074 NC_002976.3 1119254 1120231 R identified by similarity to OMNI:NTL01SA1395; hypothetical protein complement(1119254..1120231) Staphylococcus epidermidis RP62A 3242769 YP_188652.1 CDS SERP1075 NC_002976.3 1120244 1120681 R identified by similarity to OMNI:SA1558; hypothetical protein complement(1120244..1120681) Staphylococcus epidermidis RP62A 3242770 YP_188653.1 CDS SERP1076 NC_002976.3 1120886 1122205 R identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxoisovalerate dehydrogenase E2 complement(1120886..1122205) Staphylococcus epidermidis RP62A 3242771 YP_188654.1 CDS SERP1077 NC_002976.3 1122218 1123201 R identified by similarity to EGAD:21712; match to protein family HMM PF02779; match to protein family HMM PF02780; 2-oxoisovalerate dehydrogenase E1 complement(1122218..1123201) Staphylococcus epidermidis RP62A 3242772 YP_188655.1 CDS SERP1078 NC_002976.3 1123194 1124192 R identified by similarity to EGAD:21637; match to protein family HMM PF00676; 2-oxoisovalerate dehydrogenase E1 complement(1123194..1124192) Staphylococcus epidermidis RP62A 3242773 YP_188656.1 CDS lpdA NC_002976.3 1124207 1125628 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; 2-oxoisovalerate dehydrogenase E3 complement(1124207..1125628) Staphylococcus epidermidis RP62A 3242774 YP_188657.1 CDS recN NC_002976.3 1125888 1127564 R identified by similarity to EGAD:12400; match to protein family HMM TIGR00634; DNA repair protein RecN complement(1125888..1127564) Staphylococcus epidermidis RP62A 3242775 YP_188658.1 CDS argR NC_002976.3 1127580 1128032 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(1127580..1128032) Staphylococcus epidermidis RP62A 3242776 YP_188659.1 CDS ispA NC_002976.3 1128347 1129228 R identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase complement(1128347..1129228) Staphylococcus epidermidis RP62A 3242786 YP_188660.1 CDS xseB NC_002976.3 1129206 1129436 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1129206..1129436) Staphylococcus epidermidis RP62A 3242787 YP_188661.1 CDS xseA NC_002976.3 1129429 1130766 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1129429..1130766) Staphylococcus epidermidis RP62A 3242788 YP_188662.1 CDS nusB NC_002976.3 1130781 1131170 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1130781..1131170) Staphylococcus epidermidis RP62A 3242789 YP_188663.1 CDS SERP1086 NC_002976.3 1131246 1131608 R identified by similarity to OMNI:SA1570; match to protein family HMM PF03780; hypothetical protein complement(1131246..1131608) Staphylococcus epidermidis RP62A 3242790 YP_188664.1 CDS accC NC_002976.3 1131620 1132978 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1131620..1132978) Staphylococcus epidermidis RP62A 3242791 YP_188665.1 CDS accB NC_002976.3 1132978 1133445 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1132978..1133445) Staphylococcus epidermidis RP62A 3242792 YP_188666.1 CDS argD NC_002976.3 1133703 1134830 R identified by similarity to EGAD:10055; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase complement(1133703..1134830) Staphylococcus epidermidis RP62A 3242103 YP_188667.1 CDS argB NC_002976.3 1134833 1135570 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1134833..1135570) Staphylococcus epidermidis RP62A 3242104 YP_188668.1 CDS argJ NC_002976.3 1135580 1136773 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(1135580..1136773) Staphylococcus epidermidis RP62A 3242105 YP_188669.1 CDS argC NC_002976.3 1136791 1137816 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1136791..1137816) Staphylococcus epidermidis RP62A 3242106 YP_188670.1 CDS efp NC_002976.3 1137966 1138523 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1137966..1138523) Staphylococcus epidermidis RP62A 3242107 YP_188671.1 CDS SERP1094 NC_002976.3 1138550 1139611 R identified by similarity to GP:3372642; match to protein family HMM PF00557; proline dipeptidase complement(1138550..1139611) Staphylococcus epidermidis RP62A 3242108 YP_188672.1 CDS SERP1095 NC_002976.3 1139714 1140292 D lipoprotein 1139714..1140292 Staphylococcus epidermidis RP62A 3242109 YP_188673.1 CDS SERP1096 NC_002976.3 1140306 1140524 D identified by similarity to OMNI:SA1590; hypothetical protein 1140306..1140524 Staphylococcus epidermidis RP62A 3240945 YP_188674.1 CDS SERP1097 NC_002976.3 1140565 1141395 R identified by match to protein family HMM PF02539; match to protein family HMM PF03099; lipoate-protein ligase A complement(1140565..1141395) Staphylococcus epidermidis RP62A 3240946 YP_188675.1 CDS SERP1098 NC_002976.3 1141555 1141941 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1141555..1141941 Staphylococcus epidermidis RP62A 3240947 YP_188676.1 CDS SERP1100 NC_002976.3 1142833 1144341 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1142833..1144341) Staphylococcus epidermidis RP62A 3240949 YP_188677.1 CDS SERP1101 NC_002976.3 1144334 1145680 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1144334..1145680) Staphylococcus epidermidis RP62A 3240950 YP_188678.1 CDS gcvT NC_002976.3 1145700 1146791 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1145700..1146791) Staphylococcus epidermidis RP62A 3240951 YP_188679.1 CDS aroK NC_002976.3 1147009 1147506 R identified by similarity to EGAD:29699; match to protein family HMM PF01202; shikimate kinase complement(1147009..1147506) Staphylococcus epidermidis RP62A 3240960 YP_188680.1 CDS SERP1104 NC_002976.3 1147686 1148177 R identified by similarity to OMNI:NTL01SA1420; hypothetical protein complement(1147686..1148177) Staphylococcus epidermidis RP62A 3240961 YP_188681.1 CDS SERP1105 NC_002976.3 1148101 1148394 R identified by similarity to OMNI:NTL01SA1421; hypothetical protein complement(1148101..1148394) Staphylococcus epidermidis RP62A 3240962 YP_188682.1 CDS SERP1106 NC_002976.3 1148381 1148830 R identified by similarity to OMNI:SA1598; hypothetical protein complement(1148381..1148830) Staphylococcus epidermidis RP62A 3240963 YP_188683.1 CDS comGC NC_002976.3 1148808 1149125 R identified by similarity to EGAD:18290; competence protein ComG complement(1148808..1149125) Staphylococcus epidermidis RP62A 3240964 YP_188684.1 CDS SERP1108 NC_002976.3 1149143 1150210 R identified by similarity to EGAD:21818; match to protein family HMM PF00482; competence protein ComG complement(1149143..1150210) Staphylococcus epidermidis RP62A 3240965 YP_188685.1 CDS SERP1109 NC_002976.3 1150182 1151165 R identified by similarity to EGAD:12231; match to protein family HMM PF00437; competence protein ComGA complement(1150182..1151165) Staphylococcus epidermidis RP62A 3240966 YP_188686.1 CDS SERP1110 NC_002976.3 1151213 1151836 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1151213..1151836) Staphylococcus epidermidis RP62A 3240967 YP_188687.1 CDS SERP1111 NC_002976.3 1151836 1152162 R identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(1151836..1152162) Staphylococcus epidermidis RP62A 3242885 YP_188688.1 CDS glk NC_002976.3 1152162 1153148 R identified by similarity to EGAD:33102; match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase complement(1152162..1153148) Staphylococcus epidermidis RP62A 3242886 YP_188689.1 CDS SERP1113 NC_002976.3 1153148 1153348 R identified by similarity to OMNI:SA1605; hypothetical protein complement(1153148..1153348) Staphylococcus epidermidis RP62A 3242887 YP_188690.1 CDS SERP1114 NC_002976.3 1153332 1154792 R identified by match to protein family HMM PF01694; rhomboid family protein complement(1153332..1154792) Staphylococcus epidermidis RP62A 3242888 YP_188691.1 CDS SERP1115 NC_002976.3 1154793 1155344 R identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase complement(1154793..1155344) Staphylococcus epidermidis RP62A 3242889 YP_188692.1 CDS rpmG NC_002976.3 1155527 1155676 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1155527..1155676) Staphylococcus epidermidis RP62A 3242890 YP_188693.1 CDS pbp3 NC_002976.3 1155781 1157871 R identified by similarity to OMNI:SA1609; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 complement(1155781..1157871) Staphylococcus epidermidis RP62A 3242891 YP_188694.1 CDS SERP1118 NC_002976.3 1157913 1158014 D hypothetical protein 1157913..1158014 Staphylococcus epidermidis RP62A 3242892 YP_188695.1 CDS sodA NC_002976.3 1158272 1158871 R identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase complement(1158272..1158871) Staphylococcus epidermidis RP62A 3242900 YP_188696.1 CDS SERP1120 NC_002976.3 1159276 1159695 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1159276..1159695) Staphylococcus epidermidis RP62A 3242901 YP_188697.1 CDS SERP1121 NC_002976.3 1159698 1160546 R identified by match to protein family HMM PF00950; ABC transporter permease complement(1159698..1160546) Staphylococcus epidermidis RP62A 3242902 YP_188698.1 CDS SERP1122 NC_002976.3 1160580 1161362 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1160580..1161362) Staphylococcus epidermidis RP62A 3242903 YP_188699.1 CDS nfo NC_002976.3 1161580 1162470 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1161580..1162470) Staphylococcus epidermidis RP62A 3242904 YP_188700.1 CDS SERP1124 NC_002976.3 1162480 1163826 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase complement(1162480..1163826) Staphylococcus epidermidis RP62A 3242905 YP_188701.1 CDS SERP1125 NC_002976.3 1163861 1164961 R identified by similarity to OMNI:SA1616; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1163861..1164961) Staphylococcus epidermidis RP62A 3242906 YP_188702.1 CDS SERP1126 NC_002976.3 1164951 1165640 R identified by similarity to OMNI:SA1617; match to protein family HMM PF04816; hypothetical protein complement(1164951..1165640) Staphylococcus epidermidis RP62A 3242907 YP_188703.1 CDS rpoD NC_002976.3 1165795 1166901 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1165795..1166901) Staphylococcus epidermidis RP62A 3242916 YP_188704.1 CDS dnaG NC_002976.3 1167172 1168968 R identified by similarity to EGAD:15135; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase complement(1167172..1168968) Staphylococcus epidermidis RP62A 3242917 YP_188705.1 CDS SERP1129 NC_002976.3 1169142 1169960 R identified by similarity to OMNI:NTL01SA1444; match to protein family HMM PF03618; hypothetical protein complement(1169142..1169960) Staphylococcus epidermidis RP62A 3242918 YP_188706.1 CDS SERP1130 NC_002976.3 1169972 1170595 R identified by match to protein family HMM PF00571; CBS domain-containing protein complement(1169972..1170595) Staphylococcus epidermidis RP62A 3242780 YP_188707.1 CDS SERP1131 NC_002976.3 1170668 1170766 D hypothetical protein 1170668..1170766 Staphylococcus epidermidis RP62A 3242781 YP_188708.1 CDS glyS NC_002976.3 1170931 1172322 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1170931..1172322 Staphylococcus epidermidis RP62A 3242782 YP_188709.1 CDS SERP1133 NC_002976.3 1172452 1173213 R identified by match to protein family HMM PF02565; RecO family DNA repair protein complement(1172452..1173213) Staphylococcus epidermidis RP62A 3242783 YP_188710.1 CDS era NC_002976.3 1173239 1174138 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1173239..1174138) Staphylococcus epidermidis RP62A 3242784 YP_188711.1 CDS cdd NC_002976.3 1174138 1174542 R identified by similarity to EGAD:8728; match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase complement(1174138..1174542) Staphylococcus epidermidis RP62A 3242785 YP_188712.1 CDS dgkA NC_002976.3 1174542 1174898 R identified by similarity to EGAD:11045; match to protein family HMM PF01219; diacylglycerol kinase complement(1174542..1174898) Staphylococcus epidermidis RP62A 3242793 YP_188713.1 CDS SERP1137 NC_002976.3 1174900 1175367 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1174900..1175367) Staphylococcus epidermidis RP62A 3242794 YP_188714.1 CDS SERP1138 NC_002976.3 1175368 1176315 R identified by match to protein family HMM PF02562; PhoH family protein complement(1175368..1176315) Staphylococcus epidermidis RP62A 3242795 YP_188715.1 CDS SERP1139 NC_002976.3 1176601 1177284 R identified by similarity to OMNI:SA1629; hypothetical protein complement(1176601..1177284) Staphylococcus epidermidis RP62A 3242796 YP_188716.1 CDS SERP1140 NC_002976.3 1177300 1178289 R identified by similarity to OMNI:SA1630; hypothetical protein complement(1177300..1178289) Staphylococcus epidermidis RP62A 3242797 YP_188717.1 CDS SERP1141 NC_002976.3 1178304 1179014 R identified by similarity to OMNI:SA1631; hypothetical protein complement(1178304..1179014) Staphylococcus epidermidis RP62A 3242798 YP_188718.1 CDS SERP1142 NC_002976.3 1179528 1179638 R hypothetical protein complement(1179528..1179638) Staphylococcus epidermidis RP62A 3242799 YP_188719.1 CDS rpsU NC_002976.3 1179860 1180036 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1179860..1180036) Staphylococcus epidermidis RP62A 3242800 YP_188720.1 CDS SERP1144 NC_002976.3 1180162 1181508 R identified by similarity to OMNI:SA1633; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein complement(1180162..1181508) Staphylococcus epidermidis RP62A 3242801 YP_188721.1 CDS SERP1145 NC_002976.3 1181514 1182275 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1181514..1182275) Staphylococcus epidermidis RP62A 3242110 YP_188722.1 CDS prmA NC_002976.3 1182268 1183206 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1182268..1183206) Staphylococcus epidermidis RP62A 3242111 YP_188723.1 CDS dnaJ NC_002976.3 1183210 1184331 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(1183210..1184331) Staphylococcus epidermidis RP62A 3240939 YP_188724.1 CDS dnaK NC_002976.3 1184476 1186305 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1184476..1186305) Staphylococcus epidermidis RP62A 3240940 YP_188725.1 CDS grpE NC_002976.3 1186361 1186993 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1186361..1186993) Staphylococcus epidermidis RP62A 3240941 YP_188726.1 CDS hrcA NC_002976.3 1187022 1187999 R identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(1187022..1187999) Staphylococcus epidermidis RP62A 3240942 YP_188727.1 CDS SERP1151 NC_002976.3 1188099 1189223 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1188099..1189223) Staphylococcus epidermidis RP62A 3240943 YP_188728.1 CDS SERP1152 NC_002976.3 1189342 1191165 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1189342..1191165) Staphylococcus epidermidis RP62A 3240944 YP_188729.1 CDS rpsT NC_002976.3 1191458 1191709 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1191458..1191709 Staphylococcus epidermidis RP62A 3240952 YP_188730.1 CDS holA NC_002976.3 1191827 1192801 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1191827..1192801) Staphylococcus epidermidis RP62A 3240953 YP_188731.1 CDS SERP1155 NC_002976.3 1192846 1195062 R identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; competence protein ComEC complement(1192846..1195062) Staphylococcus epidermidis RP62A 3240954 YP_188732.1 CDS SERP1156 NC_002976.3 1195066 1195527 R identified by similarity to EGAD:23914; match to protein family HMM PF00383; competence protein ComE complement(1195066..1195527) Staphylococcus epidermidis RP62A 3240955 YP_188733.1 CDS SERP1157 NC_002976.3 1195607 1196281 R identified by similarity to OMNI:NTL01LL1813; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComE complement(1195607..1196281) Staphylococcus epidermidis RP62A 3240956 YP_188734.1 CDS SERP1158 NC_002976.3 1196340 1197059 R identified by similarity to OMNI:SA1647; hypothetical protein complement(1196340..1197059) Staphylococcus epidermidis RP62A 3240957 YP_188735.1 CDS SERP1159 NC_002976.3 1197062 1197415 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-related protein complement(1197062..1197415) Staphylococcus epidermidis RP62A 3240958 YP_188736.1 CDS SERP1160 NC_002976.3 1197416 1198000 R identified by similarity to OMNI:SA1649; match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein complement(1197416..1198000) Staphylococcus epidermidis RP62A 3240959 YP_188737.1 CDS nadD NC_002976.3 1197987 1198562 R identified by similarity to OMNI:SA1650; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1197987..1198562) Staphylococcus epidermidis RP62A 3240968 YP_188738.1 CDS SERP1162 NC_002976.3 1198559 1198852 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein complement(1198559..1198852) Staphylococcus epidermidis RP62A 3240387 YP_188739.1 CDS aroE NC_002976.3 1198852 1199661 R identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(1198852..1199661) Staphylococcus epidermidis RP62A 3240969 YP_188740.1 CDS SERP1164 NC_002976.3 1199677 1200777 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1199677..1200777) Staphylococcus epidermidis RP62A 3240970 YP_188741.1 CDS SERP1165 NC_002976.3 1200778 1201305 R identified by similarity to OMNI:SA1654; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase complement(1200778..1201305) Staphylococcus epidermidis RP62A 3242882 YP_188742.1 CDS mtn NC_002976.3 1201325 1202011 R identified by similarity to EGAD:16140; match to protein family HMM PF01048; match to protein family HMM TIGR01704; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1201325..1202011) Staphylococcus epidermidis RP62A 3242883 YP_188743.1 CDS SERP1167 NC_002976.3 1202210 1203454 R identified by similarity to OMNI:SA1659; hypothetical protein complement(1202210..1203454) Staphylococcus epidermidis RP62A 3242884 YP_188744.1 CDS SERP1168 NC_002976.3 1203466 1204224 R identified by similarity to OMNI:SA1660; match to protein family HMM PF03746; LamB/YcsF family protein complement(1203466..1204224) Staphylococcus epidermidis RP62A 3242893 YP_188745.1 CDS SERP1169 NC_002976.3 1204221 1205582 R identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase complement(1204221..1205582) Staphylococcus epidermidis RP62A 3242894 YP_188746.1 CDS SERP1170 NC_002976.3 1205593 1206033 R identified by match to protein family HMM PF00364; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1205593..1206033) Staphylococcus epidermidis RP62A 3242895 YP_188747.1 CDS SERP1171 NC_002976.3 1206034 1207038 R identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; urea amidolyase complement(1206034..1207038) Staphylococcus epidermidis RP62A 3242896 YP_188748.1 CDS SERP1172 NC_002976.3 1207028 1207759 R identified by similarity to OMNI:SA1664; match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein complement(1207028..1207759) Staphylococcus epidermidis RP62A 3242897 YP_188749.1 CDS SERP1173 NC_002976.3 1208279 1208761 R identified by similarity to EGAD:14951; match to protein family HMM PF01797; IS200 family transposase complement(1208279..1208761) Staphylococcus epidermidis RP62A 3242898 YP_188750.1 CDS greA NC_002976.3 1209059 1209535 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1209059..1209535) Staphylococcus epidermidis RP62A 3242899 YP_188751.1 CDS udk NC_002976.3 1209566 1210189 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1209566..1210189) Staphylococcus epidermidis RP62A 3242908 YP_188752.1 CDS SERP1176 NC_002976.3 1210189 1211457 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1210189..1211457) Staphylococcus epidermidis RP62A 3242909 YP_188753.1 CDS SERP1177 NC_002976.3 1211475 1212398 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1211475..1212398) Staphylococcus epidermidis RP62A 3242910 YP_188754.1 CDS SERP1178 NC_002976.3 1212401 1213036 R identified by match to protein family HMM PF01596; O-methyltransferase complement(1212401..1213036) Staphylococcus epidermidis RP62A 3242911 YP_188755.1 CDS SERP1179 NC_002976.3 1213465 1213773 R identified by similarity to OMNI:SA1670; hypothetical protein complement(1213465..1213773) Staphylococcus epidermidis RP62A 3242912 YP_188756.1 CDS SERP1180 NC_002976.3 1213788 1214216 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1213788..1214216) Staphylococcus epidermidis RP62A 3242913 YP_188757.1 CDS SERP1181 NC_002976.3 1214218 1214478 R identified by similarity to OMNI:SA1672; hypothetical protein complement(1214218..1214478) Staphylococcus epidermidis RP62A 3242914 YP_188758.1 CDS alaS NC_002976.3 1214542 1217172 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1214542..1217172) Staphylococcus epidermidis RP62A 3242915 YP_188759.1 CDS SERP1183 NC_002976.3 1217501 1219933 R identified by match to protein family HMM TIGR01448; RecD/TraA family helicase complement(1217501..1219933) Staphylococcus epidermidis RP62A 3241854 YP_188760.1 CDS SERP1184 NC_002976.3 1219935 1220603 R identified by similarity to OMNI:SA1675; match to protein family HMM PF00515; TPR domain-containing protein complement(1219935..1220603) Staphylococcus epidermidis RP62A 3241813 YP_188761.1 CDS mnmA NC_002976.3 1220766 1221884 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1220766..1221884) Staphylococcus epidermidis RP62A 3241814 YP_188762.1 CDS SERP1186 NC_002976.3 1221884 1223026 R identified by match to protein family HMM PF00266; aminotransferase class V complement(1221884..1223026) Staphylococcus epidermidis RP62A 3241815 YP_188763.1 CDS SERP1187 NC_002976.3 1223269 1224264 D identified by match to protein family HMM PF00296; luciferase 1223269..1224264 Staphylococcus epidermidis RP62A 3241816 YP_188764.1 CDS SERP1188 NC_002976.3 1224464 1224607 R identified by similarity to OMNI:SA1679; hypothetical protein complement(1224464..1224607) Staphylococcus epidermidis RP62A 3241817 YP_188765.1 CDS SERP1189 NC_002976.3 1224793 1225215 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(1224793..1225215) Staphylococcus epidermidis RP62A 3241818 YP_188766.1 CDS SERP1190 NC_002976.3 1225301 1226572 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1225301..1226572 Staphylococcus epidermidis RP62A 3241819 YP_188767.1 CDS SERP1191 NC_002976.3 1226766 1227542 R identified by match to protein family HMM PF00899; HesA/MoeB/ThiF family protein complement(1226766..1227542) Staphylococcus epidermidis RP62A 3241826 YP_188768.1 CDS aspS NC_002976.3 1228098 1229864 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1228098..1229864) Staphylococcus epidermidis RP62A 3241827 YP_188769.1 CDS hisS NC_002976.3 1229867 1231141 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1229867..1231141) Staphylococcus epidermidis RP62A 3241828 YP_188770.1 CDS SERP1194 NC_002976.3 1231513 1232388 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1231513..1232388) Staphylococcus epidermidis RP62A 3241829 YP_188771.1 CDS dtd NC_002976.3 1232385 1232837 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1232385..1232837) Staphylococcus epidermidis RP62A 3241830 YP_188772.1 CDS relA-2 NC_002976.3 1232851 1235040 R identified by similarity to EGAD:107375; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(1232851..1235040) Staphylococcus epidermidis RP62A 3241831 YP_188773.1 CDS SERP1197 NC_002976.3 1235389 1235490 D hypothetical protein 1235389..1235490 Staphylococcus epidermidis RP62A 3241832 YP_188774.1 CDS apt NC_002976.3 1235559 1236077 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1235559..1236077) Staphylococcus epidermidis RP62A 3241833 YP_188775.1 CDS recJ NC_002976.3 1236096 1238369 R identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(1236096..1238369) Staphylococcus epidermidis RP62A 3241032 YP_188776.1 CDS SERP1201 NC_002976.3 1239114 1241405 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(1239114..1241405) Staphylococcus epidermidis RP62A 3241034 YP_188777.1 CDS yajC NC_002976.3 1241744 1242004 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit complement(1241744..1242004) Staphylococcus epidermidis RP62A 3241035 YP_188778.1 CDS tgt NC_002976.3 1242020 1243159 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1242020..1243159) Staphylococcus epidermidis RP62A 3241036 YP_188779.1 CDS queA NC_002976.3 1243180 1244205 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1243180..1244205) Staphylococcus epidermidis RP62A 3241037 YP_188780.1 CDS ruvB NC_002976.3 1244207 1245211 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1244207..1245211) Staphylococcus epidermidis RP62A 3241038 YP_188781.1 CDS ruvA NC_002976.3 1245225 1245827 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1245225..1245827) Staphylococcus epidermidis RP62A 3241102 YP_188782.1 CDS SERP1207 NC_002976.3 1245840 1246295 R identified by match to protein family HMM PF01842; hypothetical protein complement(1245840..1246295) Staphylococcus epidermidis RP62A 3241103 YP_188783.1 CDS obgE NC_002976.3 1246307 1247599 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1246307..1247599) Staphylococcus epidermidis RP62A 3241104 YP_188784.1 CDS rpmA NC_002976.3 1247745 1248029 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1247745..1248029) Staphylococcus epidermidis RP62A 3241105 YP_188785.1 CDS SERP1210 NC_002976.3 1248041 1248361 R identified by similarity to OMNI:SA1701; match to protein family HMM PF04327; hypothetical protein complement(1248041..1248361) Staphylococcus epidermidis RP62A 3241106 YP_188786.1 CDS rplU NC_002976.3 1248366 1248674 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1248366..1248674) Staphylococcus epidermidis RP62A 3241107 YP_188787.1 CDS SERP1212 NC_002976.3 1248796 1249317 R identified by match to protein family HMM PF04093; rod shape-determining protein MreD complement(1248796..1249317) Staphylococcus epidermidis RP62A 3241108 YP_188788.1 CDS mreC NC_002976.3 1249317 1250156 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1249317..1250156) Staphylococcus epidermidis RP62A 3241109 YP_188789.1 CDS SERP1214 NC_002976.3 1250563 1250703 R hypothetical protein complement(1250563..1250703) Staphylococcus epidermidis RP62A 3241849 YP_188790.1 CDS SERP1215 NC_002976.3 1250787 1251272 R identified by similarity to OMNI:NTL01SA1531; hypothetical protein complement(1250787..1251272) Staphylococcus epidermidis RP62A 3241850 YP_188791.1 CDS SERP1216 NC_002976.3 1251437 1251616 D identified by similarity to GP:14247423; hypothetical protein 1251437..1251616 Staphylococcus epidermidis RP62A 3241851 YP_188792.1 CDS SERP1218 NC_002976.3 1252055 1252717 R Tn554 hypothetical protein complement(1252055..1252717) Staphylococcus epidermidis RP62A 3241852 YP_188794.1 CDS ermA-1 NC_002976.3 1253251 1253982 D identified by similarity to EGAD:8703; match to protein family HMM PF00398; Tn554, rRNA adenine N-6-methyltransferase 1253251..1253982 Staphylococcus epidermidis RP62A 3241853 YP_188795.1 CDS spc-1 NC_002976.3 1254108 1254890 R identified by similarity to EGAD:9921; match to protein family HMM PF01909; Tn554, streptomycin 3''-adenylyltransferase complement(1254108..1254890) Staphylococcus epidermidis RP62A 3241820 YP_188796.1 CDS tnpC-1 NC_002976.3 1255041 1255418 R identified by similarity to EGAD:6135; Tn554, transposase C complement(1255041..1255418) Staphylococcus epidermidis RP62A 3241821 YP_188797.1 CDS tnpB-1 NC_002976.3 1255425 1257317 R identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase B complement(1255425..1257317) Staphylococcus epidermidis RP62A 3241822 YP_188798.1 CDS tnpA-1 NC_002976.3 1257314 1258399 R identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase A complement(1257314..1258399) Staphylococcus epidermidis RP62A 3241823 YP_188799.1 CDS SERP1225 NC_002976.3 1258518 1259072 R disrupted by a copy of Tn554 may be nonfunctional; identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; truncated DNA repair protein RadC complement(1258518..1259072) Staphylococcus epidermidis RP62A 3241824 YP_188800.1 CDS SERP1226 NC_002976.3 1259069 1259779 R identified by match to protein family HMM PF01478; type III leader peptidase complement(1259069..1259779) Staphylococcus epidermidis RP62A 3241825 YP_188801.1 CDS folC NC_002976.3 1259963 1261228 R identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase/dihydrofolate synthase complement(1259963..1261228) Staphylococcus epidermidis RP62A 3241834 YP_188802.1 CDS valS NC_002976.3 1261239 1263869 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1261239..1263869) Staphylococcus epidermidis RP62A 3241835 YP_188803.1 CDS SERP1229 NC_002976.3 1264212 1264772 D identified by similarity to EGAD:6433; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 1264212..1264772 Staphylococcus epidermidis RP62A 3241836 YP_188804.1 CDS SERP1230 NC_002976.3 1264939 1266006 R identified by match to protein family HMM PF05145; hypothetical protein complement(1264939..1266006) Staphylococcus epidermidis RP62A 3241837 YP_188805.1 CDS hemL-1 NC_002976.3 1266296 1267579 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1266296..1267579) Staphylococcus epidermidis RP62A 3241838 YP_188806.1 CDS hemB NC_002976.3 1267603 1268577 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1267603..1268577) Staphylococcus epidermidis RP62A 3241030 YP_188807.1 CDS hemD NC_002976.3 1268567 1269247 R identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase complement(1268567..1269247) Staphylococcus epidermidis RP62A 3241031 YP_188808.1 CDS hemC NC_002976.3 1269281 1270207 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1269281..1270207) Staphylococcus epidermidis RP62A 3241039 YP_188809.1 CDS SERP1235 NC_002976.3 1270261 1271073 R identified by similarity to EGAD:15411; match to protein family HMM PF01578; hemX protein complement(1270261..1271073) Staphylococcus epidermidis RP62A 3241040 YP_188810.1 CDS hemA NC_002976.3 1271095 1272441 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1271095..1272441) Staphylococcus epidermidis RP62A 3241041 YP_188811.1 CDS engB NC_002976.3 1272611 1273198 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1272611..1273198) Staphylococcus epidermidis RP62A 3241042 YP_188812.1 CDS clpX NC_002976.3 1273310 1274572 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1273310..1274572) Staphylococcus epidermidis RP62A 3241043 YP_188813.1 CDS tig NC_002976.3 1274859 1276160 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1274859..1276160) Staphylococcus epidermidis RP62A 3241044 YP_188814.1 CDS SERP1240 NC_002976.3 1276321 1277244 R identified by similarity to OMNI:SA1723; hypothetical protein complement(1276321..1277244) Staphylococcus epidermidis RP62A 3241045 YP_188815.1 CDS SERP1241 NC_002976.3 1277261 1277872 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1277261..1277872) Staphylococcus epidermidis RP62A 3241101 YP_188816.1 CDS rplT NC_002976.3 1278290 1278646 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1278290..1278646) Staphylococcus epidermidis RP62A 3241110 YP_188817.1 CDS rpmI NC_002976.3 1278698 1278898 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(1278698..1278898) Staphylococcus epidermidis RP62A 3241111 YP_188818.1 CDS infC NC_002976.3 1278926 1279453 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1278926..1279453) Staphylococcus epidermidis RP62A 3241112 YP_188819.1 CDS SERP1245 NC_002976.3 1279661 1281163 R identified by match to protein family HMM PF00324; amino acid permease complement(1279661..1281163) Staphylococcus epidermidis RP62A 3241113 YP_188820.1 CDS thrS NC_002976.3 1281592 1283529 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1281592..1283529) Staphylococcus epidermidis RP62A 3241114 YP_188821.1 CDS dnaI NC_002976.3 1283882 1284802 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1283882..1284802) Staphylococcus epidermidis RP62A 3241115 YP_188822.1 CDS SERP1248 NC_002976.3 1284802 1286172 R identified by similarity to EGAD:12808; replication initiation and membrane attachment protein complement(1284802..1286172) Staphylococcus epidermidis RP62A 3241116 YP_188823.1 CDS nrdR NC_002976.3 1286173 1286643 R identified by match to protein family HMM PF02644; match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator complement(1286173..1286643) Staphylococcus epidermidis RP62A 3241117 YP_188824.1 CDS gapA-2 NC_002976.3 1287163 1288188 R identified by similarity to EGAD:107759; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase complement(1287163..1288188) Staphylococcus epidermidis RP62A 3241118 YP_188825.1 CDS coaE NC_002976.3 1289032 1289643 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1289032..1289643) Staphylococcus epidermidis RP62A 3242920 YP_188826.1 CDS fpg NC_002976.3 1289659 1290531 R In the Gram-positive bacteria, the preferred gene symbol is fpg. In other prokaryotes, the gene symbol is mutM.; identified by similarity to EGAD:8853; match to protein family HMM PF01149; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase complement(1289659..1290531) Staphylococcus epidermidis RP62A 3242921 YP_188827.1 CDS polA NC_002976.3 1290547 1293177 R identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(1290547..1293177) Staphylococcus epidermidis RP62A 3242922 YP_188828.1 CDS phoR NC_002976.3 1293472 1295169 R identified by similarity to EGAD:18590; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensory box histidine kinase PhoR complement(1293472..1295169) Staphylococcus epidermidis RP62A 3242923 YP_188829.1 CDS phoP NC_002976.3 1295169 1295879 R identified by similarity to EGAD:18490; match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory protein PhoP complement(1295169..1295879) Staphylococcus epidermidis RP62A 3240848 YP_188830.1 CDS icd NC_002976.3 1296195 1297463 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1296195..1297463) Staphylococcus epidermidis RP62A 3240849 YP_188831.1 CDS gltA NC_002976.3 1297506 1298627 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1297506..1298627) Staphylococcus epidermidis RP62A 3240850 YP_188832.1 CDS SERP1259 NC_002976.3 1298756 1299928 R identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase complement(1298756..1299928) Staphylococcus epidermidis RP62A 3240851 YP_188833.1 CDS SERP1260 NC_002976.3 1300307 1301665 D identified by match to protein family HMM PF00324; amino acid permease 1300307..1301665 Staphylococcus epidermidis RP62A 3240852 YP_188834.1 CDS pyk NC_002976.3 1302046 1303803 R identified by similarity to EGAD:37614; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(1302046..1303803) Staphylococcus epidermidis RP62A 3240853 YP_188835.1 CDS pfkA NC_002976.3 1303827 1304795 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1303827..1304795) Staphylococcus epidermidis RP62A 3240854 YP_188836.1 CDS accA NC_002976.3 1304973 1305917 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1304973..1305917) Staphylococcus epidermidis RP62A 3240855 YP_188837.1 CDS accD NC_002976.3 1305917 1306774 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1305917..1306774) Staphylococcus epidermidis RP62A 3241703 YP_188838.1 CDS SERP1265 NC_002976.3 1306873 1308102 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme complement(1306873..1308102) Staphylococcus epidermidis RP62A 3241704 YP_188839.1 CDS dnaE NC_002976.3 1308406 1311603 R identified by similarity to EGAD:108043; match to protein family HMM PF02231; match to protein family HMM TIGR00594; DNA polymerase III, alpha subunit complement(1308406..1311603) Staphylococcus epidermidis RP62A 3241705 YP_188840.1 CDS SERP1267 NC_002976.3 1311627 1312565 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(1311627..1312565) Staphylococcus epidermidis RP62A 3241706 YP_188841.1 CDS SERP1268 NC_002976.3 1312599 1313897 R identified by match to protein family HMM PF00571; match to protein family HMM PF03061; CBS domain-containing protein complement(1312599..1313897) Staphylococcus epidermidis RP62A 3241707 YP_188842.1 CDS SERP1269 NC_002976.3 1314095 1314508 D identified by similarity to OMNI:SA1753; match to protein family HMM PF00582; universal stress protein 1314095..1314508 Staphylococcus epidermidis RP62A 3241708 YP_188843.1 CDS SERP1270 NC_002976.3 1314809 1315498 R catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase complement(1314809..1315498) Staphylococcus epidermidis RP62A 3241709 YP_188844.1 CDS pepQ NC_002976.3 1315670 1316725 D identified by similarity to EGAD:30261; match to protein family HMM PF00557; proline dipeptidase 1315670..1316725 Staphylococcus epidermidis RP62A 3241710 YP_188845.1 CDS ald NC_002976.3 1316789 1317904 R identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1316789..1317904) Staphylococcus epidermidis RP62A 3241718 YP_188846.1 CDS SERP1273 NC_002976.3 1318052 1318552 D identified by similarity to OMNI:SA1759; match to protein family HMM PF00582; universal stress protein 1318052..1318552 Staphylococcus epidermidis RP62A 3241719 YP_188847.1 CDS ackA NC_002976.3 1319186 1320439 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1319186..1320439) Staphylococcus epidermidis RP62A 3241721 YP_188848.1 CDS SERP1276 NC_002976.3 1320528 1321475 R identified by similarity to OMNI:NTL01SA1590; hypothetical protein complement(1320528..1321475) Staphylococcus epidermidis RP62A 3241722 YP_188849.1 CDS tpx NC_002976.3 1321604 1322098 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(1321604..1322098) Staphylococcus epidermidis RP62A 3241723 YP_188850.1 CDS SERP1278 NC_002976.3 1322341 1323105 R identified by similarity to OMNI:SA1763; match to protein family HMM PF01925; hypothetical protein complement(1322341..1323105) Staphylococcus epidermidis RP62A 3241724 YP_188851.1 CDS thiI NC_002976.3 1323145 1324368 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1323145..1324368) Staphylococcus epidermidis RP62A 3241725 YP_188852.1 CDS SERP1280 NC_002976.3 1324368 1325507 R identified by match to protein family HMM PF00266; aminotransferase class V complement(1324368..1325507) Staphylococcus epidermidis RP62A 3241735 YP_188853.1 CDS SERP1281 NC_002976.3 1325837 1327531 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1325837..1327531) Staphylococcus epidermidis RP62A 3241736 YP_188854.1 CDS SERP1282 NC_002976.3 1327666 1328136 D identified by match to protein family HMM PF01590; GAF domain-containing protein 1327666..1328136 Staphylococcus epidermidis RP62A 3241420 YP_188855.1 CDS SERP1283 NC_002976.3 1328209 1328325 R hypothetical protein complement(1328209..1328325) Staphylococcus epidermidis RP62A 3241421 YP_188856.1 CDS rpsD NC_002976.3 1328357 1328959 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1328357..1328959 Staphylococcus epidermidis RP62A 3241422 YP_188857.1 CDS SERP1285 NC_002976.3 1329229 1329975 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(1329229..1329975) Staphylococcus epidermidis RP62A 3241423 YP_188858.1 CDS SERP1286 NC_002976.3 1330053 1330493 D identified by match to protein family HMM PF02566; OsmC/Ohr family protein 1330053..1330493 Staphylococcus epidermidis RP62A 3241424 YP_188859.1 CDS SERP1287 NC_002976.3 1330620 1331783 D identified by match to protein family HMM PF00266; aminotransferase class V 1330620..1331783 Staphylococcus epidermidis RP62A 3241425 YP_188860.1 CDS serA NC_002976.3 1331773 1333368 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1331773..1333368 Staphylococcus epidermidis RP62A 3241426 YP_188861.1 CDS SERP1289 NC_002976.3 1333448 1334572 R identified by match to protein family HMM PF00702; HAD superfamily hydrolase complement(1333448..1334572) Staphylococcus epidermidis RP62A 3241432 YP_188862.1 CDS SERP1290 NC_002976.3 1334668 1336140 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system, IIBC components complement(1334668..1336140) Staphylococcus epidermidis RP62A 3241433 YP_188863.1 CDS SERP1291 NC_002976.3 1336350 1336973 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1336350..1336973) Staphylococcus epidermidis RP62A 3241434 YP_188864.1 CDS SERP1292 NC_002976.3 1337253 1338491 D identified by similarity to OMNI:NTL01LL2179; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease HtrA 1337253..1338491 Staphylococcus epidermidis RP62A 3241435 YP_188865.1 CDS tyrS NC_002976.3 1338682 1339947 R identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(1338682..1339947) Staphylococcus epidermidis RP62A 3241436 YP_188866.1 CDS SERP1294 NC_002976.3 1340351 1341256 D identified by match to protein family HMM PF00912; transglycosylase 1340351..1341256 Staphylococcus epidermidis RP62A 3241437 YP_188867.1 CDS fhs NC_002976.3 1341346 1343013 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1341346..1343013) Staphylococcus epidermidis RP62A 3241438 YP_188868.1 CDS ccpA NC_002976.3 1343433 1344422 R identified by similarity to EGAD:41199; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A complement(1343433..1344422) Staphylococcus epidermidis RP62A 3241439 YP_188869.1 CDS SERP1297 NC_002976.3 1344678 1345769 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(1344678..1345769) Staphylococcus epidermidis RP62A 3241446 YP_188870.1 CDS SERP1298 NC_002976.3 1346204 1347427 R identified by similarity to OMNI:SA1788; hypothetical protein complement(1346204..1347427) Staphylococcus epidermidis RP62A 3241447 YP_188871.1 CDS SERP1299 NC_002976.3 1347505 1347996 R identified by similarity to OMNI:SA1789; hypothetical protein complement(1347505..1347996) Staphylococcus epidermidis RP62A 3241448 YP_188872.1 CDS murC NC_002976.3 1348071 1349384 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1348071..1349384) Staphylococcus epidermidis RP62A 3242924 YP_188873.1 CDS SERP1301 NC_002976.3 1349405 1352914 R identified by match to protein family HMM PF01580; DNA translocase FtsK complement(1349405..1352914) Staphylococcus epidermidis RP62A 3242925 YP_188874.1 CDS SERP1302 NC_002976.3 1352935 1353531 R identified by similarity to OMNI:SA1792; match to protein family HMM PF01588; hypothetical protein complement(1352935..1353531) Staphylococcus epidermidis RP62A 3242926 YP_188875.1 CDS SERP1303 NC_002976.3 1353554 1354408 R identified by similarity to OMNI:NTL01SA1621; hypothetical protein complement(1353554..1354408) Staphylococcus epidermidis RP62A 3242927 YP_188876.1 CDS SERP1304 NC_002976.3 1354546 1354857 R identified by match to protein family HMM PF00085; thioredoxin complement(1354546..1354857) Staphylococcus epidermidis RP62A 3242928 YP_188877.1 CDS pepA NC_002976.3 1354863 1355948 R identified by similarity to EGAD:40297; match to protein family HMM PF05343; glutamyl-aminopeptidase complement(1354863..1355948) Staphylococcus epidermidis RP62A 3242929 YP_188878.1 CDS SERP1306 NC_002976.3 1356033 1356347 D identified by similarity to OMNI:SA1796; hypothetical protein 1356033..1356347 Staphylococcus epidermidis RP62A 3242930 YP_188879.1 CDS trmB NC_002976.3 1356510 1357157 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1356510..1357157) Staphylococcus epidermidis RP62A 3241839 YP_188880.1 CDS SERP1308 NC_002976.3 1357171 1357962 R identified by similarity to OMNI:NTL01SA1627; match to protein family HMM PF01636; hypothetical protein complement(1357171..1357962) Staphylococcus epidermidis RP62A 3240856 YP_188881.1 CDS dat NC_002976.3 1358349 1359197 R identified by similarity to SP:P19938; match to protein family HMM PF01063; match to protein family HMM TIGR01121; D-alanine aminotransferase complement(1358349..1359197) Staphylococcus epidermidis RP62A 3240857 YP_188882.1 CDS SERP1310 NC_002976.3 1359201 1360610 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1359201..1360610) Staphylococcus epidermidis RP62A 3240858 YP_188883.1 CDS SERP1311 NC_002976.3 1360918 1361346 R identified by similarity to OMNI:SA1802; hypothetical protein complement(1360918..1361346) Staphylococcus epidermidis RP62A 3240859 YP_188884.1 CDS SERP1312 NC_002976.3 1361364 1362056 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase complement(1361364..1362056) Staphylococcus epidermidis RP62A 3241691 YP_188885.1 CDS SERP1313 NC_002976.3 1362053 1363714 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(1362053..1363714) Staphylococcus epidermidis RP62A 3241692 YP_188886.1 CDS SERP1314 NC_002976.3 1363803 1363901 R hypothetical protein complement(1363803..1363901) Staphylococcus epidermidis RP62A 3241693 YP_188887.1 CDS SERP1315 NC_002976.3 1363987 1365249 D identified by similarity to OMNI:SA1805; match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 1363987..1365249 Staphylococcus epidermidis RP62A 3241694 YP_188888.1 CDS SERP1316 NC_002976.3 1365621 1376699 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1365621..1376699) Staphylococcus epidermidis RP62A 3241695 YP_188889.1 CDS SERP1317 NC_002976.3 1377104 1377415 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(1377104..1377415) Staphylococcus epidermidis RP62A 3241696 YP_188890.1 CDS leuS NC_002976.3 1377441 1379855 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1377441..1379855) Staphylococcus epidermidis RP62A 3241697 YP_188891.1 CDS SERP1319 NC_002976.3 1380147 1381361 R drug transporter complement(1380147..1381361) Staphylococcus epidermidis RP62A 3241698 YP_188892.1 CDS SERP1320 NC_002976.3 1381468 1382421 D identified by similarity to OMNI:SA1810; match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 1381468..1382421 Staphylococcus epidermidis RP62A 3241699 YP_188893.1 CDS SERP1321 NC_002976.3 1382418 1382981 D identified by similarity to OMNI:SA1811; hypothetical protein 1382418..1382981 Staphylococcus epidermidis RP62A 3241700 YP_188894.1 CDS rot NC_002976.3 1383215 1383625 R identified by match to protein family HMM TIGR01889; repressor of toxins complement(1383215..1383625) Staphylococcus epidermidis RP62A 3241701 YP_188895.1 CDS SERP1323 NC_002976.3 1384106 1384933 R lysophospholipase complement(1384106..1384933) Staphylococcus epidermidis RP62A 3241702 YP_188896.1 CDS putA NC_002976.3 1385177 1386178 D identified by match to protein family HMM PF01619; proline dehydrogenase 1385177..1386178 Staphylococcus epidermidis RP62A 3241711 YP_188897.1 CDS ribH NC_002976.3 1386436 1386897 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1386436..1386897) Staphylococcus epidermidis RP62A 3241712 YP_188898.1 CDS ribBA NC_002976.3 1386910 1388091 R identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone-4-phosphate synthase complement(1386910..1388091) Staphylococcus epidermidis RP62A 3241713 YP_188899.1 CDS ribE NC_002976.3 1388104 1388736 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1388104..1388736) Staphylococcus epidermidis RP62A 3241714 YP_188900.1 CDS ribD NC_002976.3 1388743 1389786 R identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1388743..1389786) Staphylococcus epidermidis RP62A 3241715 YP_188901.1 CDS SERP1329 NC_002976.3 1390222 1391706 R identified by similarity to OMNI:SA1821; hypothetical protein complement(1390222..1391706) Staphylococcus epidermidis RP62A 3241716 YP_188902.1 CDS SERP1330 NC_002976.3 1392054 1392905 R identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase complement(1392054..1392905) Staphylococcus epidermidis RP62A 3241717 YP_188903.1 CDS SERP1331 NC_002976.3 1393283 1393498 R identified by similarity to OMNI:SA1826; hypothetical protein complement(1393283..1393498) Staphylococcus epidermidis RP62A 3241726 YP_188904.1 CDS SERP1332 NC_002976.3 1393531 1393650 D hypothetical protein 1393531..1393650 Staphylococcus epidermidis RP62A 3241727 YP_188905.1 CDS SERP1333 NC_002976.3 1393706 1394185 D identified by similarity to OMNI:NTL01SA1652; match to protein family HMM PF04542; hypothetical protein 1393706..1394185 Staphylococcus epidermidis RP62A 3241728 YP_188906.1 CDS SERP1334 NC_002976.3 1394191 1394634 D identified by similarity to OMNI:SA1828; hypothetical protein 1394191..1394634 Staphylococcus epidermidis RP62A 3241729 YP_188907.1 CDS SERP1335 NC_002976.3 1394621 1395064 R identified by similarity to OMNI:SA1829; hypothetical protein complement(1394621..1395064) Staphylococcus epidermidis RP62A 3241730 YP_188908.1 CDS tal NC_002976.3 1395204 1395917 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(1395204..1395917) Staphylococcus epidermidis RP62A 3241731 YP_188909.1 CDS SERP1337 NC_002976.3 1396194 1396502 D identified by similarity to OMNI:NTL01SA1657; hypothetical protein 1396194..1396502 Staphylococcus epidermidis RP62A 3241732 YP_188910.1 CDS SERP1338 NC_002976.3 1396539 1396904 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1396539..1396904 Staphylococcus epidermidis RP62A 3241733 YP_188911.1 CDS SERP1339 NC_002976.3 1396901 1397254 D identified by match to protein family HMM PF02537; CrcB family protein 1396901..1397254 Staphylococcus epidermidis RP62A 3241734 YP_188912.1 CDS SERP1340 NC_002976.3 1397898 1398374 D This element is disrupted by Tn554; may be nonfunctional due to interuption; ISSep1-like transposase 1397898..1398374 Staphylococcus epidermidis RP62A 3241427 YP_188913.1 CDS SERP1341 NC_002976.3 1398493 1399155 R Tn554 hypothetical protein complement(1398493..1399155) Staphylococcus epidermidis RP62A 3241428 YP_188915.1 CDS ermA-2 NC_002976.3 1399689 1400420 D identified by similarity to EGAD:8703; match to protein family HMM PF00398; Tn554, rRNA adenine N-6-methyltransferase 1399689..1400420 Staphylococcus epidermidis RP62A 3241429 YP_188916.1 CDS spc-2 NC_002976.3 1400546 1401328 R identified by similarity to EGAD:9921; match to protein family HMM PF01909; Tn554, streptomycin 3''-adenylyltransferase complement(1400546..1401328) Staphylococcus epidermidis RP62A 3241430 YP_188917.1 CDS tnpC-2 NC_002976.3 1401479 1401856 R identified by similarity to EGAD:6135; Tn554, transposase C complement(1401479..1401856) Staphylococcus epidermidis RP62A 3241431 YP_188918.1 CDS tnpB-2 NC_002976.3 1401863 1403755 R identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase B complement(1401863..1403755) Staphylococcus epidermidis RP62A 3241440 YP_188919.1 CDS tnpA-2 NC_002976.3 1403752 1404837 R identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554, transposase A complement(1403752..1404837) Staphylococcus epidermidis RP62A 3241441 YP_188920.1 CDS SERP1348 NC_002976.3 1405027 1405623 D This element is disrupted by Tn554; identified by match to protein family HMM PF02371; may be nonfunctional due to interruption; ISSep1-like transposase 1405027..1405623 Staphylococcus epidermidis RP62A 3241442 YP_188921.1 CDS SERP1350 NC_002976.3 1406293 1407129 R identified by match to protein family HMM PF00248; aldo/keto reductase complement(1406293..1407129) Staphylococcus epidermidis RP62A 3241444 YP_188922.1 CDS SERP1351 NC_002976.3 1407309 1408217 R identified by similarity to GP:14247561; hypothetical protein complement(1407309..1408217) Staphylococcus epidermidis RP62A 3241445 YP_188923.1 CDS metK NC_002976.3 1408320 1409519 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1408320..1409519) Staphylococcus epidermidis RP62A 3241453 YP_188924.1 CDS pckA NC_002976.3 1409889 1411481 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1409889..1411481 Staphylococcus epidermidis RP62A 3241454 YP_188925.1 CDS SERP1354 NC_002976.3 1411712 1412497 R identified by similarity to OMNI:SA1840; hypothetical protein complement(1411712..1412497) Staphylococcus epidermidis RP62A 3241455 YP_188926.1 CDS SERP1355 NC_002976.3 1412484 1412960 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1412484..1412960) Staphylococcus epidermidis RP62A 3241456 YP_188927.1 CDS SERP1356 NC_002976.3 1413022 1413270 D identified by similarity to OMNI:SA1842; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1413022..1413270 Staphylococcus epidermidis RP62A 3241457 YP_188928.1 CDS SERP1357 NC_002976.3 1413267 1414268 R identified by match to protein family HMM TIGR01928; O-succinylbenzoic acid synthetase complement(1413267..1414268) Staphylococcus epidermidis RP62A 3241458 YP_188929.1 CDS menE NC_002976.3 1414258 1415682 R identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase complement(1414258..1415682) Staphylococcus epidermidis RP62A 3241459 YP_188930.1 CDS SERP1359 NC_002976.3 1416692 1416838 D hypothetical protein 1416692..1416838 Staphylococcus epidermidis RP62A 3240830 YP_188931.1 CDS SERP1360 NC_002976.3 1416933 1417598 D surface lipoprotein-related protein 1416933..1417598 Staphylococcus epidermidis RP62A 3240831 YP_188932.1 CDS SERP1361 NC_002976.3 1417760 1418047 D hypothetical protein 1417760..1418047 Staphylococcus epidermidis RP62A 3240832 YP_188933.1 CDS SERP1362 NC_002976.3 1418574 1419308 D hypothetical protein 1418574..1419308 Staphylococcus epidermidis RP62A 3240833 YP_188934.1 CDS SERP1365 NC_002976.3 1421818 1422372 R identified by similarity to OMNI:SA1885; hypothetical protein complement(1421818..1422372) Staphylococcus epidermidis RP62A 3240836 YP_188935.1 CDS hemG NC_002976.3 1422508 1423956 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(1422508..1423956) Staphylococcus epidermidis RP62A 3240837 YP_188936.1 CDS hemH NC_002976.3 1424049 1424972 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1424049..1424972) Staphylococcus epidermidis RP62A 3242850 YP_188937.1 CDS hemE NC_002976.3 1425049 1426083 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1425049..1426083) Staphylococcus epidermidis RP62A 3242851 YP_188938.1 CDS SERP1369 NC_002976.3 1426403 1426906 D identified by similarity to OMNI:SA1891; RNAIII-activating protein TRAP 1426403..1426906 Staphylococcus epidermidis RP62A 3242852 YP_188939.1 CDS SERP1370 NC_002976.3 1427468 1428085 R identified by match to protein family HMM PF03596; cadmium resistance family protein complement(1427468..1428085) Staphylococcus epidermidis RP62A 3242853 YP_188940.1 CDS SERP1371 NC_002976.3 1428144 1429367 R identified by similarity to EGAD:35133; ABC transporter permease complement(1428144..1429367) Staphylococcus epidermidis RP62A 3242854 YP_188941.1 CDS SERP1372 NC_002976.3 1429360 1430100 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1429360..1430100) Staphylococcus epidermidis RP62A 3242855 YP_188942.1 CDS SERP1373 NC_002976.3 1430230 1430655 D identified by match to protein family HMM PF01230; HIT family protein 1430230..1430655 Staphylococcus epidermidis RP62A 3242856 YP_188943.1 CDS SERP1374 NC_002976.3 1430732 1431103 D identified by similarity to OMNI:SA1895; hypothetical protein 1430732..1431103 Staphylococcus epidermidis RP62A 3242857 YP_188944.1 CDS SERP1375 NC_002976.3 1431269 1431829 D identified by similarity to OMNI:SA1896; hypothetical protein 1431269..1431829 Staphylococcus epidermidis RP62A 3242866 YP_188945.1 CDS SERP1376 NC_002976.3 1432032 1433009 D identified by similarity to EGAD:7364; match to protein family HMM PF00639; protein export protein PrsA 1432032..1433009 Staphylococcus epidermidis RP62A 3242867 YP_188946.1 CDS SERP1377 NC_002976.3 1433159 1433263 R identified by similarity to OMNI:SA2433; hypothetical protein complement(1433159..1433263) Staphylococcus epidermidis RP62A 3242868 YP_188947.1 CDS cbf1 NC_002976.3 1433435 1434376 R catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease complement(1433435..1434376) Staphylococcus epidermidis RP62A 3242869 YP_188948.1 CDS SERP1379 NC_002976.3 1434373 1437312 R identified by similarity to OMNI:SA1899; hypothetical protein complement(1434373..1437312) Staphylococcus epidermidis RP62A 3242870 YP_188949.1 CDS SERP1380 NC_002976.3 1437302 1438498 R identified by match to protein family HMM PF00149; match to protein family HMM PF02549; DNA repair exonuclease complement(1437302..1438498) Staphylococcus epidermidis RP62A 3242871 YP_188950.1 CDS SERP1381 NC_002976.3 1438769 1439113 R identified by similarity to OMNI:SA1902; hypothetical protein complement(1438769..1439113) Staphylococcus epidermidis RP62A 3242872 YP_188951.1 CDS SERP1382 NC_002976.3 1439186 1440316 R identified by similarity to OMNI:SA1903; match to protein family HMM PF04286; hypothetical protein complement(1439186..1440316) Staphylococcus epidermidis RP62A 3242873 YP_188952.1 CDS SERP1383 NC_002976.3 1440498 1440962 R Cro/CI family transcriptional regulator complement(1440498..1440962) Staphylococcus epidermidis RP62A 3241909 YP_188953.1 CDS SERP1384 NC_002976.3 1441233 1441856 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator complement(1441233..1441856) Staphylococcus epidermidis RP62A 3241910 YP_188954.1 CDS SERP1385 NC_002976.3 1441849 1442982 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(1441849..1442982) Staphylococcus epidermidis RP62A 3241449 YP_188955.1 CDS SERP1386 NC_002976.3 1443141 1443965 D identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D 1443141..1443965 Staphylococcus epidermidis RP62A 3241450 YP_188956.1 CDS fumC NC_002976.3 1444326 1445711 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1444326..1445711) Staphylococcus epidermidis RP62A 3241451 YP_188957.1 CDS SERP1388 NC_002976.3 1445896 1446300 R identified by similarity to OMNI:NTL01SA1729; hypothetical protein complement(1445896..1446300) Staphylococcus epidermidis RP62A 3241452 YP_188958.1 CDS SERP1389 NC_002976.3 1446456 1446635 R identified by similarity to OMNI:SA1911; hypothetical protein complement(1446456..1446635) Staphylococcus epidermidis RP62A 3241460 YP_188959.1 CDS SERP1390 NC_002976.3 1446659 1447258 R identified by match to protein family HMM PF01182; glucosamine-6-phosphate isomerase complement(1446659..1447258) Staphylococcus epidermidis RP62A 3241461 YP_188960.1 CDS SERP1391 NC_002976.3 1447416 1447886 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase complement(1447416..1447886) Staphylococcus epidermidis RP62A 3241462 YP_188961.1 CDS SERP1392 NC_002976.3 1447883 1449013 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; (Fe-S)-binding protein complement(1447883..1449013) Staphylococcus epidermidis RP62A 3241463 YP_188962.1 CDS SERP1393 NC_002976.3 1449223 1449378 R identified by similarity to GP:8918792; truncated IS1272 transposase complement(1449223..1449378) Staphylococcus epidermidis RP62A 3241464 YP_188963.1 CDS SERP1394 NC_002976.3 1449875 1450597 R identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(1449875..1450597) Staphylococcus epidermidis RP62A 3241465 YP_188964.1 CDS SERP1395 NC_002976.3 1450590 1452047 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter substrate-binding protein complement(1450590..1452047) Staphylococcus epidermidis RP62A 3240829 YP_188965.1 CDS SERP1396 NC_002976.3 1452286 1453344 R identified by match to protein family HMM PF02378; PTS system, IIC component complement(1452286..1453344) Staphylococcus epidermidis RP62A 3240838 YP_188966.1 CDS sspA NC_002976.3 1453570 1454418 R identified by similarity to EGAD:7212; match to protein family HMM PF00089; glutamyl endopeptidase precursor SspA complement(1453570..1454418) Staphylococcus epidermidis RP62A 3240839 YP_188967.1 CDS SERP1398 NC_002976.3 1462924 1463376 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1462924..1463376) Staphylococcus epidermidis RP62A 3242845 YP_188968.1 CDS SERP1399 NC_002976.3 1463472 1464422 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(1463472..1464422) Staphylococcus epidermidis RP62A 3242846 YP_188969.1 CDS bcp NC_002976.3 1464425 1464883 R identified by match to protein family HMM PF00578; bacterioferritin comigratory protein complement(1464425..1464883) Staphylococcus epidermidis RP62A 3242847 YP_188970.1 CDS hemL-2 NC_002976.3 1464964 1466253 D converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1464964..1466253 Staphylococcus epidermidis RP62A 3242848 YP_188971.1 CDS SERP1402 NC_002976.3 1466560 1467654 D identified by similarity to OMNI:NTL01SA1742; hypothetical protein 1466560..1467654 Staphylococcus epidermidis RP62A 3242849 YP_188972.1 CDS SERP1403 NC_002976.3 1467814 1469550 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein complement(1467814..1469550) Staphylococcus epidermidis RP62A 3242858 YP_188973.1 CDS SERP1404 NC_002976.3 1469571 1469681 D hypothetical protein 1469571..1469681 Staphylococcus epidermidis RP62A 3242859 YP_188974.1 CDS SERP1405 NC_002976.3 1469792 1470334 R identified by similarity to OMNI:SA1925; match to protein family HMM PF04167; hypothetical protein complement(1469792..1470334) Staphylococcus epidermidis RP62A 3242860 YP_188975.1 CDS mutY NC_002976.3 1470441 1471484 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1470441..1471484) Staphylococcus epidermidis RP62A 3242861 YP_188976.1 CDS SERP1407 NC_002976.3 1471665 1472639 D identified by similarity to OMNI:SA1927; match to protein family HMM PF04307; hypothetical protein 1471665..1472639 Staphylococcus epidermidis RP62A 3242862 YP_188977.1 CDS SERP1408 NC_002976.3 1472825 1473655 R identified by similarity to OMNI:SA1928; hypothetical protein complement(1472825..1473655) Staphylococcus epidermidis RP62A 3242863 YP_188978.1 CDS SERP1409 NC_002976.3 1473664 1475181 R ABC transporter ATP-binding protein complement(1473664..1475181) Staphylococcus epidermidis RP62A 3242864 YP_188979.1 CDS SERP1410 NC_002976.3 1475197 1475487 R identified by similarity to OMNI:NTL01SA1749; hypothetical protein complement(1475197..1475487) Staphylococcus epidermidis RP62A 3242865 YP_188980.1 CDS recX NC_002976.3 1475504 1476307 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1475504..1476307) Staphylococcus epidermidis RP62A 3242874 YP_188981.1 CDS SERP1412 NC_002976.3 1476585 1477394 R monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase complement(1476585..1477394) Staphylococcus epidermidis RP62A 3242875 YP_188982.1 CDS SERP1413 NC_002976.3 1477715 1478233 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; ThiJ/PfpI family protein complement(1477715..1478233) Staphylococcus epidermidis RP62A 3242876 YP_188983.1 CDS SERP1414 NC_002976.3 1478533 1478694 R identified by similarity to OMNI:SA1934; hypothetical protein complement(1478533..1478694) Staphylococcus epidermidis RP62A 3242877 YP_188984.1 CDS SERP1415 NC_002976.3 1478853 1479995 D identified by similarity to OMNI:NTL01SA1754; match to protein family HMM PF04055; radical SAM domain-containing protein 1478853..1479995 Staphylococcus epidermidis RP62A 3242878 YP_188985.1 CDS SERP1416 NC_002976.3 1480132 1480662 R identified by match to protein family HMM PF03061; cytosolic long-chain acyl-CoA thioester hydrolase family protein complement(1480132..1480662) Staphylococcus epidermidis RP62A 3242879 YP_188986.1 CDS SERP1417 NC_002976.3 1480742 1481983 R identified by match to protein family HMM PF02073; aminopeptidase complement(1480742..1481983) Staphylococcus epidermidis RP62A 3242880 YP_188987.1 CDS SERP1418 NC_002976.3 1481985 1482200 R identified by similarity to GP:14247652; hypothetical protein complement(1481985..1482200) Staphylococcus epidermidis RP62A 3242881 YP_188988.1 CDS SERP1419 NC_002976.3 1482341 1482805 D identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase 1482341..1482805 Staphylococcus epidermidis RP62A 3241917 YP_188989.1 CDS SERP1420 NC_002976.3 1482813 1483097 D identified by similarity to OMNI:SA1940; hypothetical protein 1482813..1483097 Staphylococcus epidermidis RP62A 3241918 YP_188990.1 CDS SERP1421 NC_002976.3 1483504 1484682 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 1483504..1484682 Staphylococcus epidermidis RP62A 3241919 YP_188991.1 CDS vraR NC_002976.3 1484739 1485368 R identified by similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator VraR complement(1484739..1485368) Staphylococcus epidermidis RP62A 3241920 YP_188992.1 CDS vraS NC_002976.3 1485358 1486404 R identified by match to protein family HMM PF02518; sensor histidine kinase VraS complement(1485358..1486404) Staphylococcus epidermidis RP62A 3241921 YP_188993.1 CDS SERP1424 NC_002976.3 1486401 1487102 R identified by similarity to OMNI:SA1944; hypothetical protein complement(1486401..1487102) Staphylococcus epidermidis RP62A 3241922 YP_188994.1 CDS SERP1425 NC_002976.3 1487117 1487512 R identified by similarity to OMNI:SA1945; hypothetical protein complement(1487117..1487512) Staphylococcus epidermidis RP62A 3241923 YP_188995.1 CDS map NC_002976.3 1487661 1488416 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1487661..1488416) Staphylococcus epidermidis RP62A 3241924 YP_188996.1 CDS SERP1427 NC_002976.3 1488590 1489576 D identified by similarity to OMNI:NTL01SA1766; hypothetical protein 1488590..1489576 Staphylococcus epidermidis RP62A 3240776 YP_188997.1 CDS SERP1428 NC_002976.3 1489727 1490263 R hypothetical protein complement(1489727..1490263) Staphylococcus epidermidis RP62A 3241933 YP_188998.1 CDS SERP1429 NC_002976.3 1490704 1491429 R cobyric acid synthase complement(1490704..1491429) Staphylococcus epidermidis RP62A 3241934 YP_188999.1 CDS SERP1430 NC_002976.3 1491431 1492744 R Mur ligase complement(1491431..1492744) Staphylococcus epidermidis RP62A 3241935 YP_189000.1 CDS SERP1431 NC_002976.3 1492966 1493466 D identified by similarity to EGAD:8114; match to protein family HMM PF00210; ferritin 1492966..1493466 Staphylococcus epidermidis RP62A 3241936 YP_189001.1 CDS SERP1432 NC_002976.3 1493655 1494209 D identified by match to protein family HMM PF00929; exonuclease 1493655..1494209 Staphylococcus epidermidis RP62A 3241937 YP_189002.1 CDS dinP NC_002976.3 1494240 1495310 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1494240..1495310) Staphylococcus epidermidis RP62A 3241938 YP_189003.1 CDS SERP1434 NC_002976.3 1495620 1496162 R identified by similarity to OMNI:SA1956; hypothetical protein complement(1495620..1496162) Staphylococcus epidermidis RP62A 3241939 YP_189004.1 CDS SERP1435 NC_002976.3 1496306 1497676 R identified by match to protein family HMM PF01938; match to protein family HMM TIGR00479; RNA methyltransferase complement(1496306..1497676) Staphylococcus epidermidis RP62A 3241940 YP_189005.1 CDS SERP1436 NC_002976.3 1497756 1498706 R similar to YegS from E. coli; lipid kinase complement(1497756..1498706) Staphylococcus epidermidis RP62A 3241949 YP_189006.1 CDS gatB NC_002976.3 1498931 1500358 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1498931..1500358) Staphylococcus epidermidis RP62A 3241950 YP_189007.1 CDS gatA NC_002976.3 1500371 1501828 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1500371..1501828) Staphylococcus epidermidis RP62A 3241951 YP_189008.1 CDS gatC NC_002976.3 1501830 1502132 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1501830..1502132) Staphylococcus epidermidis RP62A 3241952 YP_189009.1 CDS putP NC_002976.3 1502510 1504045 D identified by similarity to GP:2565311; match to protein family HMM PF00474; match to protein family HMM TIGR00813; proline permease 1502510..1504045 Staphylococcus epidermidis RP62A 3241953 YP_189010.1 CDS camS NC_002976.3 1504373 1505581 R identified by similarity to OMNI:NTL01SA1780; hypothetical protein complement(1504373..1505581) Staphylococcus epidermidis RP62A 3241954 YP_189011.1 CDS ligA NC_002976.3 1505601 1507598 R identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent complement(1505601..1507598) Staphylococcus epidermidis RP62A 3241955 YP_189012.1 CDS pcrA NC_002976.3 1507602 1509791 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(1507602..1509791) Staphylococcus epidermidis RP62A 3241189 YP_189013.1 CDS SERP1444 NC_002976.3 1509788 1510480 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein complement(1509788..1510480) Staphylococcus epidermidis RP62A 3241190 YP_189014.1 CDS SERP1445 NC_002976.3 1510804 1511106 R identified by similarity to OMNI:SA1968; hypothetical protein complement(1510804..1511106) Staphylococcus epidermidis RP62A 3241191 YP_189015.1 CDS purB NC_002976.3 1511231 1512526 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1511231..1512526) Staphylococcus epidermidis RP62A 3241192 YP_189016.1 CDS SERP1447 NC_002976.3 1512938 1513117 R identified by similarity to EGAD:107605; hypothetical protein complement(1512938..1513117) Staphylococcus epidermidis RP62A 3241193 YP_189017.1 CDS SERP1448 NC_002976.3 1513101 1513727 R identified by similarity to OMNI:SA1973; hypothetical protein complement(1513101..1513727) Staphylococcus epidermidis RP62A 3241194 YP_189018.1 CDS nadE NC_002976.3 1513801 1514628 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1513801..1514628) Staphylococcus epidermidis RP62A 3241195 YP_189019.2 CDS SERP1450 NC_002976.3 1514621 1516090 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1514621..1516090) Staphylococcus epidermidis RP62A 3241196 YP_189020.1 CDS SERP1451 NC_002976.3 1516282 1517349 D identified by match to protein family HMM PF02898; nitric-oxide synthase, oxygenase subunit 1516282..1517349 Staphylococcus epidermidis RP62A 3241204 YP_189021.1 CDS pheA NC_002976.3 1517368 1518171 D identified by similarity to EGAD:17359; match to protein family HMM PF00800; match to protein family HMM PF01842; prephenate dehydratase 1517368..1518171 Staphylococcus epidermidis RP62A 3241205 YP_189022.1 CDS SERP1453 NC_002976.3 1518624 1519721 R identified by similarity to OMNI:NTL01SA1794; hypothetical protein complement(1518624..1519721) Staphylococcus epidermidis RP62A 3241206 YP_189023.1 CDS SERP1454 NC_002976.3 1519913 1520467 D identified by match to protein family HMM PF00857; isochorismatase 1519913..1520467 Staphylococcus epidermidis RP62A 3241207 YP_189024.1 CDS ppaC NC_002976.3 1520522 1521451 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 1520522..1521451 Staphylococcus epidermidis RP62A 3241208 YP_189025.1 CDS aldA-1 NC_002976.3 1521751 1523130 D identified by similarity to EGAD:18867; match to protein family HMM PF00171; aldehyde dehydrogenase 1521751..1523130 Staphylococcus epidermidis RP62A 3241209 YP_189026.1 CDS SERP1457 NC_002976.3 1523242 1524270 R identified by similarity to OMNI:NTL01SA1798; hypothetical protein complement(1523242..1524270) Staphylococcus epidermidis RP62A 3241211 YP_189027.1 CDS SERP1458 NC_002976.3 1524506 1524643 D identified by similarity to OMNI:SA1986; hypothetical protein 1524506..1524643 Staphylococcus epidermidis RP62A 3241212 YP_189028.1 CDS blaI-1 NC_002976.3 1524695 1525075 R identified by similarity to EGAD:13370; match to protein family HMM PF03965; penicillinase repressor complement(1524695..1525075) Staphylococcus epidermidis RP62A 3241217 YP_189029.1 CDS blaR1-1 NC_002976.3 1525065 1526822 R identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; regulatory protein BlaR1 complement(1525065..1526822) Staphylococcus epidermidis RP62A 3241218 YP_189030.1 CDS blaZ-1 NC_002976.3 1526929 1527774 D identified by similarity to SP:P00807; match to protein family HMM PF00144; beta-lactamase 1526929..1527774 Staphylococcus epidermidis RP62A 3241219 YP_189031.1 CDS SERP1463 NC_002976.3 1528541 1529911 R hypothetical protein complement(1528541..1529911) Staphylococcus epidermidis RP62A 3241221 YP_189032.1 CDS SERP1464 NC_002976.3 1529916 1530281 R identified by similarity to EGAD:6135; Tn554-related, transposase C complement(1529916..1530281) Staphylococcus epidermidis RP62A 3241222 YP_189033.1 CDS SERP1465 NC_002976.3 1530290 1532317 R identified by similarity to EGAD:8390; match to protein family HMM PF00589; Tn554-related, transposase B complement(1530290..1532317) Staphylococcus epidermidis RP62A 3241223 YP_189034.1 CDS SERP1466 NC_002976.3 1532356 1533468 R identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; Tn554-related, transposase A complement(1532356..1533468) Staphylococcus epidermidis RP62A 3241224 YP_189035.1 CDS SERP1468 NC_002976.3 1534168 1534338 R identified by similarity to OMNI:SA1987; hypothetical protein complement(1534168..1534338) Staphylococcus epidermidis RP62A 3240784 YP_189036.1 CDS SERP1469 NC_002976.3 1534718 1535758 D identified by similarity to OMNI:SA1988; hypothetical protein 1534718..1535758 Staphylococcus epidermidis RP62A 3241911 YP_189037.1 CDS SERP1470 NC_002976.3 1535812 1536648 R identified by similarity to OMNI:SA1989; hypothetical protein complement(1535812..1536648) Staphylococcus epidermidis RP62A 3241912 YP_189038.1 CDS SERP1471 NC_002976.3 1536645 1537202 R hypothetical protein complement(1536645..1537202) Staphylococcus epidermidis RP62A 3241913 YP_189039.1 CDS SERP1472 NC_002976.3 1537255 1537800 R identified by similarity to OMNI:SA1991; hypothetical protein complement(1537255..1537800) Staphylococcus epidermidis RP62A 3241914 YP_189040.1 CDS SERP1474 NC_002976.3 1538530 1539261 R identified by similarity to OMNI:SA1993; hypothetical protein complement(1538530..1539261) Staphylococcus epidermidis RP62A 3241916 YP_189041.1 CDS SERP1475 NC_002976.3 1539261 1540136 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1539261..1540136) Staphylococcus epidermidis RP62A 3241925 YP_189042.1 CDS SERP1476 NC_002976.3 1540154 1540813 R identified by similarity to OMNI:SA1995; hypothetical protein complement(1540154..1540813) Staphylococcus epidermidis RP62A 3241926 YP_189043.1 CDS SERP1477 NC_002976.3 1540794 1541708 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1540794..1541708) Staphylococcus epidermidis RP62A 3241927 YP_189044.1 CDS SERP1478 NC_002976.3 1541708 1542085 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1541708..1542085) Staphylococcus epidermidis RP62A 3241928 YP_189045.1 CDS SERP1479 NC_002976.3 1542402 1542572 R identified by similarity to OMNI:SA1998; hypothetical protein complement(1542402..1542572) Staphylococcus epidermidis RP62A 3241929 YP_189046.1 CDS SERP1480 NC_002976.3 1542759 1542854 R identified by similarity to OMNI:SA1999; hypothetical protein complement(1542759..1542854) Staphylococcus epidermidis RP62A 3241930 YP_189047.1 CDS SERP1481 NC_002976.3 1543045 1544334 D hypothetical protein 1543045..1544334 Staphylococcus epidermidis RP62A 3241931 YP_189048.1 CDS SERP1482 NC_002976.3 1544501 1550422 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(1544501..1550422) Staphylococcus epidermidis RP62A 3241932 YP_189049.1 CDS SERP1483 NC_002976.3 1550599 1551672 R identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(1550599..1551672) Staphylococcus epidermidis RP62A 3241941 YP_189050.1 CDS groEL NC_002976.3 1552090 1553709 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(1552090..1553709) Staphylococcus epidermidis RP62A 3241942 YP_189051.1 CDS groES NC_002976.3 1553765 1554049 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1553765..1554049) Staphylococcus epidermidis RP62A 3241943 YP_189052.1 CDS SERP1486 NC_002976.3 1554224 1554964 D identified by match to protein family HMM PF02517; abortive infection family protein 1554224..1554964 Staphylococcus epidermidis RP62A 3241944 YP_189053.1 CDS sdrH NC_002976.3 1555024 1556469 R identified by similarity to GP:8101009; sdrH protein complement(1555024..1556469) Staphylococcus epidermidis RP62A 3241945 YP_189054.1 CDS SERP1488 NC_002976.3 1556812 1557606 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1556812..1557606 Staphylococcus epidermidis RP62A 3241946 YP_189055.1 CDS hld NC_002976.3 1557987 1558064 R Lyses erythrocytes and other mammalian cells; delta-hemolysin complement(1557987..1558064) Staphylococcus epidermidis RP62A 3240443 YP_189056.1 CDS agrB NC_002976.3 1558381 1558965 D identified by similarity to OMNI:SA2023; match to protein family HMM PF04647; accessory gene regulator protein B 1558381..1558965 Staphylococcus epidermidis RP62A 3241947 YP_189057.1 CDS agrD NC_002976.3 1558949 1559089 D identified by similarity to EGAD:18902; accessory gene regulator protein D 1558949..1559089 Staphylococcus epidermidis RP62A 3241948 YP_189058.1 CDS agrC NC_002976.3 1559116 1560405 D identified by similarity to GP:2258296; match to protein family HMM PF02518; accessory gene regulator protein C 1559116..1560405 Staphylococcus epidermidis RP62A 3241181 YP_189059.1 CDS agrA NC_002976.3 1560467 1561138 D identified by similarity to EGAD:16137; match to protein family HMM PF00072; match to protein family HMM PF04397; accessory gene regulator protein A 1560467..1561138 Staphylococcus epidermidis RP62A 3241182 YP_189060.1 CDS SERP1494 NC_002976.3 1561206 1562165 R identified by match to protein family HMM PF00294; fructokinase complement(1561206..1562165) Staphylococcus epidermidis RP62A 3241183 YP_189061.1 CDS cscA NC_002976.3 1562172 1563644 R identified by similarity to EGAD:20672; match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase complement(1562172..1563644) Staphylococcus epidermidis RP62A 3241184 YP_189062.1 CDS SERP1496 NC_002976.3 1563810 1563902 R hypothetical protein complement(1563810..1563902) Staphylococcus epidermidis RP62A 3241185 YP_189063.1 CDS scrR NC_002976.3 1563904 1564857 R identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor complement(1563904..1564857) Staphylococcus epidermidis RP62A 3241186 YP_189064.1 CDS SERP1498 NC_002976.3 1564992 1566242 R identified by similarity to EGAD:19589; match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(1564992..1566242) Staphylococcus epidermidis RP62A 3241187 YP_189065.1 CDS SERP1499 NC_002976.3 1566662 1566886 R identified by similarity to OMNI:NTL01SA1924; match to protein family HMM PF01206; hypothetical protein complement(1566662..1566886) Staphylococcus epidermidis RP62A 3241188 YP_189066.1 CDS SERP1501 NC_002976.3 1567768 1569306 R identified by similarity to EGAD:107864; match to protein family HMM PF00239; hypothetical protein complement(1567768..1569306) Staphylococcus epidermidis RP62A 3241210 YP_189067.1 CDS SERP1502 NC_002976.3 1569296 1569877 R identified by match to protein family HMM PF00249; DNA-binding protein complement(1569296..1569877) Staphylococcus epidermidis RP62A 3241198 YP_189068.1 CDS SERP1503 NC_002976.3 1569969 1570100 R hypothetical protein complement(1569969..1570100) Staphylococcus epidermidis RP62A 3241199 YP_189069.1 CDS SERP1504 NC_002976.3 1570079 1570684 R hypothetical protein complement(1570079..1570684) Staphylococcus epidermidis RP62A 3240388 YP_189070.1 CDS SERP1505 NC_002976.3 1570656 1571051 R hypothetical protein complement(1570656..1571051) Staphylococcus epidermidis RP62A 3241200 YP_189071.1 CDS SERP1506 NC_002976.3 1571053 1571799 R identified by similarity to OMNI:NTL01LL0750; hypothetical protein complement(1571053..1571799) Staphylococcus epidermidis RP62A 3241201 YP_189072.1 CDS SERP1507 NC_002976.3 1571812 1572051 R hypothetical protein complement(1571812..1572051) Staphylococcus epidermidis RP62A 3241202 YP_189073.1 CDS SERP1508 NC_002976.3 1572067 1572315 R identified by similarity to EGAD:44482; thioredoxin complement(1572067..1572315) Staphylococcus epidermidis RP62A 3241203 YP_189074.1 CDS SERP1509 NC_002976.3 1572356 1572958 R hypothetical protein complement(1572356..1572958) Staphylococcus epidermidis RP62A 3241213 YP_189075.1 CDS nrdF NC_002976.3 1572986 1574008 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(1572986..1574008) Staphylococcus epidermidis RP62A 3241214 YP_189076.1 CDS SERP1511 NC_002976.3 1574054 1574317 R contains an intein; may be nonfunctional due to interuption; truncated ribonucleoside-diphosphate reductase 2 alpha subunit complement(1574054..1574317) Staphylococcus epidermidis RP62A 3241215 YP_189077.1 CDS SERP1512 NC_002976.3 1574601 1575425 R This gene may be part of a small mobile genetic element because it disrupts the gene encoding the alpha subunit of ribonucleoside-diphosphate reductase 2.; identified by match to protein family HMM PF01844; HNH endonuclease complement(1574601..1575425) Staphylococcus epidermidis RP62A 3241216 YP_189078.1 CDS SERP1513 NC_002976.3 1575579 1578488 R contains a 384 residue intein; identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; may be nonfunctional due to interuption; truncated ribonucleoside-diphosphate reductase 2, alpha subunit complement(1575579..1578488) Staphylococcus epidermidis RP62A 3241225 YP_189079.1 CDS SERP1514 NC_002976.3 1578510 1578956 R hypothetical protein complement(1578510..1578956) Staphylococcus epidermidis RP62A 3241226 YP_189080.1 CDS nrdI-2 NC_002976.3 1578956 1579369 R identified by match to protein family HMM PF02555; match to protein family HMM TIGR00333; nrdI protein complement(1578956..1579369) Staphylococcus epidermidis RP62A 3240777 YP_189081.1 CDS SERP1516 NC_002976.3 1579399 1579551 R hypothetical protein complement(1579399..1579551) Staphylococcus epidermidis RP62A 3240778 YP_189082.1 CDS SERP1517 NC_002976.3 1579570 1580271 R hypothetical protein complement(1579570..1580271) Staphylococcus epidermidis RP62A 3240779 YP_189083.1 CDS SERP1518 NC_002976.3 1580283 1580783 R identified by similarity to GP:2444088; hypothetical protein complement(1580283..1580783) Staphylococcus epidermidis RP62A 3240780 YP_189084.1 CDS SERP1519 NC_002976.3 1580918 1581514 R hypothetical protein complement(1580918..1581514) Staphylococcus epidermidis RP62A 3240781 YP_189085.1 CDS SERP1520 NC_002976.3 1581514 1581744 R hypothetical protein complement(1581514..1581744) Staphylococcus epidermidis RP62A 3240782 YP_189086.1 CDS SERP1521 NC_002976.3 1581758 1581940 R hypothetical protein complement(1581758..1581940) Staphylococcus epidermidis RP62A 3240791 YP_189087.1 CDS SERP1522 NC_002976.3 1581943 1582254 R hypothetical protein complement(1581943..1582254) Staphylococcus epidermidis RP62A 3240792 YP_189088.1 CDS SERP1523 NC_002976.3 1582329 1583336 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase complement(1582329..1583336) Staphylococcus epidermidis RP62A 3240793 YP_189089.1 CDS SERP1524 NC_002976.3 1583342 1584028 R methyltransferase domain-containing protein complement(1583342..1584028) Staphylococcus epidermidis RP62A 3240794 YP_189090.1 CDS SERP1525 NC_002976.3 1584018 1584209 R hypothetical protein complement(1584018..1584209) Staphylococcus epidermidis RP62A 3240795 YP_189091.1 CDS SERP1526 NC_002976.3 1584202 1584813 R hypothetical protein complement(1584202..1584813) Staphylococcus epidermidis RP62A 3240796 YP_189092.1 CDS SERP1527 NC_002976.3 1584828 1585010 R hypothetical protein complement(1584828..1585010) Staphylococcus epidermidis RP62A 3240797 YP_189093.1 CDS SERP1528 NC_002976.3 1585010 1585261 R hypothetical protein complement(1585010..1585261) Staphylococcus epidermidis RP62A 3240798 YP_189094.1 CDS SERP1529 NC_002976.3 1585418 1585591 R hypothetical protein complement(1585418..1585591) Staphylococcus epidermidis RP62A 3240799 YP_189095.1 CDS SERP1530 NC_002976.3 1585572 1585859 R hypothetical protein complement(1585572..1585859) Staphylococcus epidermidis RP62A 3240809 YP_189096.1 CDS SERP1531 NC_002976.3 1585852 1586118 R hypothetical protein complement(1585852..1586118) Staphylococcus epidermidis RP62A 3240810 YP_189097.1 CDS SERP1532 NC_002976.3 1586130 1586303 R hypothetical protein complement(1586130..1586303) Staphylococcus epidermidis RP62A 3240811 YP_189098.1 CDS SERP1533 NC_002976.3 1586417 1586806 R hypothetical protein complement(1586417..1586806) Staphylococcus epidermidis RP62A 3240812 YP_189099.1 CDS SERP1534 NC_002976.3 1586894 1588192 R identified by match to protein family HMM PF01068; DNA ligase, ATP-dependent complement(1586894..1588192) Staphylococcus epidermidis RP62A 3240813 YP_189100.1 CDS SERP1535 NC_002976.3 1588202 1588516 R hypothetical protein complement(1588202..1588516) Staphylococcus epidermidis RP62A 3240814 YP_189101.1 CDS SERP1536 NC_002976.3 1588654 1589034 R hypothetical protein complement(1588654..1589034) Staphylococcus epidermidis RP62A 3240815 YP_189102.1 CDS SERP1537 NC_002976.3 1589146 1591632 R DNA polymerase III, alpha subunit complement(1589146..1591632) Staphylococcus epidermidis RP62A 3240816 YP_189103.1 CDS SERP1538 NC_002976.3 1592095 1593543 R identified by match to protein family HMM PF02231; match to protein family HMM PF02811; DNA polymerase III, alpha subunit, truncation complement(1592095..1593543) Staphylococcus epidermidis RP62A 3240817 YP_189104.1 CDS SERP1539 NC_002976.3 1593556 1593930 R hypothetical protein complement(1593556..1593930) Staphylococcus epidermidis RP62A 3240827 YP_189105.1 CDS SERP1540 NC_002976.3 1594097 1594657 D identified by similarity to GP:11094377; hypothetical protein 1594097..1594657 Staphylococcus epidermidis RP62A 3240828 YP_189106.1 CDS SERP1541 NC_002976.3 1595010 1595414 D identified by similarity to GP:14020902; hypothetical protein 1595010..1595414 Staphylococcus epidermidis RP62A 3241594 YP_189107.1 CDS SERP1542 NC_002976.3 1595497 1595631 D hypothetical protein 1595497..1595631 Staphylococcus epidermidis RP62A 3241595 YP_189108.1 CDS SERP1543 NC_002976.3 1595662 1596303 R hypothetical protein complement(1595662..1596303) Staphylococcus epidermidis RP62A 3241596 YP_189109.1 CDS SERP1544 NC_002976.3 1596409 1597131 R lipoprotein complement(1596409..1597131) Staphylococcus epidermidis RP62A 3241597 YP_189110.1 CDS SERP1545 NC_002976.3 1597240 1598040 R identified by similarity to EGAD:109331; match to protein family HMM PF00149; hypothetical protein complement(1597240..1598040) Staphylococcus epidermidis RP62A 3241598 YP_189111.1 CDS SERP1546 NC_002976.3 1598044 1598538 R hypothetical protein complement(1598044..1598538) Staphylococcus epidermidis RP62A 3241599 YP_189112.1 CDS SERP1547 NC_002976.3 1598595 1598864 R hypothetical protein complement(1598595..1598864) Staphylococcus epidermidis RP62A 3241600 YP_189113.1 CDS SERP1548 NC_002976.3 1598848 1599063 R hypothetical protein complement(1598848..1599063) Staphylococcus epidermidis RP62A 3241617 YP_189114.1 CDS SERP1549 NC_002976.3 1599342 1599737 R identified by similarity to OMNI:NTL03PA00054; match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein complement(1599342..1599737) Staphylococcus epidermidis RP62A 3241618 YP_189115.1 CDS SERP1550 NC_002976.3 1599737 1599904 R hypothetical protein complement(1599737..1599904) Staphylococcus epidermidis RP62A 3241619 YP_189116.1 CDS SERP1551 NC_002976.3 1599933 1600037 R hypothetical protein complement(1599933..1600037) Staphylococcus epidermidis RP62A 3241620 YP_189117.1 CDS SERP1552 NC_002976.3 1600130 1600648 R identified by similarity to EGAD:44049; match to protein family HMM PF00149; hypothetical protein complement(1600130..1600648) Staphylococcus epidermidis RP62A 3241621 YP_189118.1 CDS SERP1553 NC_002976.3 1600648 1601298 R hypothetical protein complement(1600648..1601298) Staphylococcus epidermidis RP62A 3241622 YP_189119.1 CDS SERP1554 NC_002976.3 1601298 1601618 R hypothetical protein complement(1601298..1601618) Staphylococcus epidermidis RP62A 3240785 YP_189120.1 CDS SERP1555 NC_002976.3 1601608 1602333 R identified by match to protein family HMM PF00149; serine/threonine protein phosphatase complement(1601608..1602333) Staphylococcus epidermidis RP62A 3240786 YP_189121.1 CDS SERP1556 NC_002976.3 1602333 1602554 R hypothetical protein complement(1602333..1602554) Staphylococcus epidermidis RP62A 3240787 YP_189122.1 CDS SERP1557 NC_002976.3 1602574 1602750 R hypothetical protein complement(1602574..1602750) Staphylococcus epidermidis RP62A 3240788 YP_189123.1 CDS SERP1558 NC_002976.3 1602743 1603285 R identified by similarity to GP:7190132; hypothetical protein complement(1602743..1603285) Staphylococcus epidermidis RP62A 3240789 YP_189124.1 CDS SERP1559 NC_002976.3 1603301 1603573 R hypothetical protein complement(1603301..1603573) Staphylococcus epidermidis RP62A 3240790 YP_189125.1 CDS SERP1560 NC_002976.3 1603599 1603754 R phage transcriptional activator-related protein complement(1603599..1603754) Staphylococcus epidermidis RP62A 3240800 YP_189126.1 CDS SERP1561 NC_002976.3 1603751 1604035 R hypothetical protein complement(1603751..1604035) Staphylococcus epidermidis RP62A 3240801 YP_189127.1 CDS SERP1562 NC_002976.3 1604051 1604236 R hypothetical protein complement(1604051..1604236) Staphylococcus epidermidis RP62A 3240802 YP_189128.1 CDS SERP1563 NC_002976.3 1604221 1604400 R hypothetical protein complement(1604221..1604400) Staphylococcus epidermidis RP62A 3240803 YP_189129.1 CDS SERP1564 NC_002976.3 1604416 1604898 R hypothetical protein complement(1604416..1604898) Staphylococcus epidermidis RP62A 3240804 YP_189130.1 CDS SERP1565 NC_002976.3 1605095 1605298 R hypothetical protein complement(1605095..1605298) Staphylococcus epidermidis RP62A 3240805 YP_189131.1 CDS SERP1566 NC_002976.3 1605303 1605569 R hypothetical protein complement(1605303..1605569) Staphylococcus epidermidis RP62A 3240806 YP_189132.1 CDS SERP1567 NC_002976.3 1605591 1605866 R identified by similarity to EGAD:101508; hypothetical protein complement(1605591..1605866) Staphylococcus epidermidis RP62A 3240807 YP_189133.1 CDS SERP1568 NC_002976.3 1605889 1606128 R identified by similarity to OMNI:NTL02SA1984; hypothetical protein complement(1605889..1606128) Staphylococcus epidermidis RP62A 3240808 YP_189134.1 CDS SERP1569 NC_002976.3 1606150 1606374 R hypothetical protein complement(1606150..1606374) Staphylococcus epidermidis RP62A 3240818 YP_189135.1 CDS SERP1570 NC_002976.3 1606380 1606727 R identified by match to protein family HMM PF00565; nuclease complement(1606380..1606727) Staphylococcus epidermidis RP62A 3240819 YP_189136.1 CDS SERP1571 NC_002976.3 1606724 1607134 R identified by similarity to GP:5001708; hypothetical protein complement(1606724..1607134) Staphylococcus epidermidis RP62A 3240820 YP_189137.1 CDS SERP1572 NC_002976.3 1607174 1607437 R identified by similarity to GP:2765130; hypothetical protein complement(1607174..1607437) Staphylococcus epidermidis RP62A 3240821 YP_189138.1 CDS SERP1573 NC_002976.3 1607440 1607748 R hypothetical protein complement(1607440..1607748) Staphylococcus epidermidis RP62A 3240822 YP_189139.1 CDS SERP1574 NC_002976.3 1607754 1607864 R identified by similarity to OMNI:SA0352; hypothetical protein complement(1607754..1607864) Staphylococcus epidermidis RP62A 3240823 YP_189140.1 CDS SERP1575 NC_002976.3 1607845 1607967 R hypothetical protein complement(1607845..1607967) Staphylococcus epidermidis RP62A 3240824 YP_189141.1 CDS SERP1576 NC_002976.3 1608040 1608315 R hypothetical protein complement(1608040..1608315) Staphylococcus epidermidis RP62A 3240825 YP_189142.1 CDS SERP1577 NC_002976.3 1608328 1608525 R hypothetical protein complement(1608328..1608525) Staphylococcus epidermidis RP62A 3240826 YP_189143.1 CDS SERP1578 NC_002976.3 1608536 1609375 R identified by similarity to EGAD:74104; hypothetical protein complement(1608536..1609375) Staphylococcus epidermidis RP62A 3241601 YP_189144.1 CDS SERP1579 NC_002976.3 1609626 1610300 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 1609626..1610300 Staphylococcus epidermidis RP62A 3241602 YP_189145.1 CDS SERP1580 NC_002976.3 1610332 1610754 R hypothetical protein complement(1610332..1610754) Staphylococcus epidermidis RP62A 3241603 YP_189146.1 CDS folA-2 NC_002976.3 1610764 1611249 R identified by similarity to EGAD:43004; match to protein family HMM PF00186; dihydrofolate reductase complement(1610764..1611249) Staphylococcus epidermidis RP62A 3241604 YP_189147.1 CDS thyA NC_002976.3 1611291 1612247 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1611291..1612247) Staphylococcus epidermidis RP62A 3241605 YP_189148.1 CDS SERP1583 NC_002976.3 1612361 1612684 D identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption; IS431mec-like transposase 1612361..1612684 Staphylococcus epidermidis RP62A 3241606 YP_189149.1 CDS SERP1584 NC_002976.3 1612762 1613934 D identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase 1612762..1613934 Staphylococcus epidermidis RP62A 3241607 YP_189150.1 CDS aacA NC_002976.3 1614064 1615503 R identified by similarity to EGAD:8514; match to protein family HMM PF00583; match to protein family HMM PF01636; 6'-aminoglycoside N-acetyltransferase complement(1614064..1615503) Staphylococcus epidermidis RP62A 3241608 YP_189151.1 CDS SERP1586 NC_002976.3 1615504 1615896 R identified by match to protein family HMM PF00583; acetyltransferase complement(1615504..1615896) Staphylococcus epidermidis RP62A 3241609 YP_189152.1 CDS SERP1587 NC_002976.3 1615953 1617125 R identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase complement(1615953..1617125) Staphylococcus epidermidis RP62A 3241610 YP_189153.1 CDS SERP1588 NC_002976.3 1617188 1617610 D identified by similarity to OMNI:SA0028; may be nonfunctional due to interuption; IS431mec-like transposase 1617188..1617610 Staphylococcus epidermidis RP62A 3241611 YP_189154.1 CDS SERP1589 NC_002976.3 1617909 1618646 R hypothetical protein complement(1617909..1618646) Staphylococcus epidermidis RP62A 3241612 YP_189155.1 CDS SERP1590 NC_002976.3 1618839 1620605 R identified by match to protein family HMM PF01368; single-stranded-DNA-specific exonuclease RecJ complement(1618839..1620605) Staphylococcus epidermidis RP62A 3241613 YP_189156.1 CDS SERP1591 NC_002976.3 1620608 1621720 R identified by similarity to EGAD:107455; hypothetical protein complement(1620608..1621720) Staphylococcus epidermidis RP62A 3241614 YP_189157.1 CDS SERP1592 NC_002976.3 1621737 1623269 R identified by similarity to EGAD:107457; hypothetical protein complement(1621737..1623269) Staphylococcus epidermidis RP62A 3241615 YP_189158.1 CDS SERP1593 NC_002976.3 1623291 1623809 R identified by similarity to EGAD:107458; hypothetical protein complement(1623291..1623809) Staphylococcus epidermidis RP62A 3241616 YP_189159.1 CDS SERP1594 NC_002976.3 1623886 1624854 R identified by similarity to EGAD:107459; hypothetical protein complement(1623886..1624854) Staphylococcus epidermidis RP62A 3241626 YP_189160.1 CDS SERP1595 NC_002976.3 1624978 1625937 R identified by similarity to EGAD:107460; hypothetical protein complement(1624978..1625937) Staphylococcus epidermidis RP62A 3241627 YP_189161.1 CDS SERP1596 NC_002976.3 1625981 1626661 R hypothetical protein complement(1625981..1626661) Staphylococcus epidermidis RP62A 3241628 YP_189162.1 CDS SERP1597 NC_002976.3 1626679 1627167 R hypothetical protein complement(1626679..1627167) Staphylococcus epidermidis RP62A 3241629 YP_189163.1 CDS SERP1598 NC_002976.3 1627183 1627476 R hypothetical protein complement(1627183..1627476) Staphylococcus epidermidis RP62A 3241630 YP_189164.1 CDS SERP1599 NC_002976.3 1627591 1628595 R hypothetical protein complement(1627591..1628595) Staphylococcus epidermidis RP62A 3241631 YP_189165.1 CDS SERP1600 NC_002976.3 1628607 1629887 R hypothetical protein complement(1628607..1629887) Staphylococcus epidermidis RP62A 3241632 YP_189166.1 CDS SERP1601 NC_002976.3 1630198 1631241 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase complement(1630198..1631241) Staphylococcus epidermidis RP62A 3241633 YP_189167.1 CDS SERP1602 NC_002976.3 1631834 1631941 R hypothetical protein complement(1631834..1631941) Staphylococcus epidermidis RP62A 3241634 YP_189168.1 CDS SERP1603 NC_002976.3 1631925 1632353 R hypothetical protein complement(1631925..1632353) Staphylococcus epidermidis RP62A 3241644 YP_189169.1 CDS SERP1604 NC_002976.3 1632431 1632952 R hypothetical protein complement(1632431..1632952) Staphylococcus epidermidis RP62A 3241645 YP_189170.1 CDS SERP1605 NC_002976.3 1632952 1633404 R identified by similarity to GP:9944577; hypothetical protein complement(1632952..1633404) Staphylococcus epidermidis RP62A 3241646 YP_189171.1 CDS SERP1606 NC_002976.3 1633520 1634200 R hypothetical protein complement(1633520..1634200) Staphylococcus epidermidis RP62A 3240472 YP_189172.1 CDS SERP1607 NC_002976.3 1634229 1634492 R hypothetical protein complement(1634229..1634492) Staphylococcus epidermidis RP62A 3240473 YP_189173.1 CDS SERP1608 NC_002976.3 1634585 1634908 R identified by similarity to GP:14325470; hypothetical protein complement(1634585..1634908) Staphylococcus epidermidis RP62A 3240474 YP_189174.1 CDS SERP1609 NC_002976.3 1634953 1635612 R identified by similarity to OMNI:EF1882; hypothetical protein complement(1634953..1635612) Staphylococcus epidermidis RP62A 3240475 YP_189175.1 CDS SERP1610 NC_002976.3 1635765 1636154 R identified by similarity to OMNI:NTL01SPL1390; hypothetical protein complement(1635765..1636154) Staphylococcus epidermidis RP62A 3240476 YP_189176.1 CDS SERP1611 NC_002976.3 1636291 1636551 R hypothetical protein complement(1636291..1636551) Staphylococcus epidermidis RP62A 3240579 YP_189177.1 CDS SERP1612 NC_002976.3 1636626 1636841 R hypothetical protein complement(1636626..1636841) Staphylococcus epidermidis RP62A 3240589 YP_189178.1 CDS SERP1613 NC_002976.3 1636893 1637006 R hypothetical protein complement(1636893..1637006) Staphylococcus epidermidis RP62A 3240590 YP_189179.1 CDS SERP1614 NC_002976.3 1637021 1637305 R hypothetical protein complement(1637021..1637305) Staphylococcus epidermidis RP62A 3240591 YP_189180.1 CDS SERP1615 NC_002976.3 1638658 1638819 R hypothetical protein complement(1638658..1638819) Staphylococcus epidermidis RP62A 3240592 YP_189181.1 CDS SERP1616 NC_002976.3 1639084 1639341 R hypothetical protein complement(1639084..1639341) Staphylococcus epidermidis RP62A 3240593 YP_189182.1 CDS SERP1617 NC_002976.3 1640612 1640752 D hypothetical protein 1640612..1640752 Staphylococcus epidermidis RP62A 3240594 YP_189183.1 CDS SERP1618 NC_002976.3 1641200 1642075 R hypothetical protein complement(1641200..1642075) Staphylococcus epidermidis RP62A 3240595 YP_189184.1 CDS SERP1619 NC_002976.3 1642111 1644396 R identified by similarity to OMNI:NTL01SPL1451; hypothetical protein complement(1642111..1644396) Staphylococcus epidermidis RP62A 3240596 YP_189185.1 CDS SERP1620 NC_002976.3 1644532 1646028 D hypothetical protein 1644532..1646028 Staphylococcus epidermidis RP62A 3240597 YP_189186.1 CDS SERP1621 NC_002976.3 1646288 1646617 D identified by similarity to EGAD:8587; match to protein family HMM PF00216; DNA-binding protein HU 1646288..1646617 Staphylococcus epidermidis RP62A 3240598 YP_189187.1 CDS SERP1622 NC_002976.3 1646643 1646828 D identified by similarity to EGAD:107767; hypothetical protein 1646643..1646828 Staphylococcus epidermidis RP62A 3240607 YP_189188.1 CDS SERP1623 NC_002976.3 1646837 1648021 D identified by similarity to EGAD:107768; hypothetical protein 1646837..1648021 Staphylococcus epidermidis RP62A 3240608 YP_189189.1 CDS SERP1624 NC_002976.3 1649716 1650600 D identified by similarity to EGAD:107771; hypothetical protein 1649716..1650600 Staphylococcus epidermidis RP62A 3240609 YP_189190.1 CDS SERP1625 NC_002976.3 1650593 1652392 D identified by similarity to EGAD:73596; prophage, terminase, ATPase subunit 1650593..1652392 Staphylococcus epidermidis RP62A 3240610 YP_189191.1 CDS SERP1626 NC_002976.3 1652410 1653972 D hypothetical protein 1652410..1653972 Staphylococcus epidermidis RP62A 3240611 YP_189192.1 CDS SERP1627 NC_002976.3 1653965 1655344 D hypothetical protein 1653965..1655344 Staphylococcus epidermidis RP62A 3240612 YP_189193.1 CDS SERP1628 NC_002976.3 1655372 1655812 D hypothetical protein 1655372..1655812 Staphylococcus epidermidis RP62A 3240613 YP_189194.1 CDS SERP1629 NC_002976.3 1655851 1656852 D hypothetical protein 1655851..1656852 Staphylococcus epidermidis RP62A 3240614 YP_189195.1 CDS SERP1630 NC_002976.3 1656927 1657478 D hypothetical protein 1656927..1657478 Staphylococcus epidermidis RP62A 3240615 YP_189196.1 CDS SERP1631 NC_002976.3 1657496 1657930 D hypothetical protein 1657496..1657930 Staphylococcus epidermidis RP62A 3240623 YP_189197.1 CDS SERP1632 NC_002976.3 1657920 1658237 D hypothetical protein 1657920..1658237 Staphylococcus epidermidis RP62A 3240624 YP_189198.1 CDS SERP1633 NC_002976.3 1658241 1658906 D hypothetical protein 1658241..1658906 Staphylococcus epidermidis RP62A 3240625 YP_189199.1 CDS SERP1634 NC_002976.3 1658896 1659417 D identified by similarity to EGAD:107781; hypothetical protein 1658896..1659417 Staphylococcus epidermidis RP62A 3240626 YP_189200.1 CDS SERP1635 NC_002976.3 1659423 1660295 D identified by similarity to EGAD:107782; hypothetical protein 1659423..1660295 Staphylococcus epidermidis RP62A 3242692 YP_189201.1 CDS SERP1636 NC_002976.3 1660334 1661125 D identified by similarity to EGAD:107783; hypothetical protein 1660334..1661125 Staphylococcus epidermidis RP62A 3242693 YP_189202.1 CDS SERP1637 NC_002976.3 1661209 1661766 D hypothetical protein 1661209..1661766 Staphylococcus epidermidis RP62A 3242694 YP_189203.1 CDS SERP1638 NC_002976.3 1661766 1662239 D hypothetical protein 1661766..1662239 Staphylococcus epidermidis RP62A 3241623 YP_189204.1 CDS SERP1639 NC_002976.3 1662255 1663271 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 1662255..1663271 Staphylococcus epidermidis RP62A 3241624 YP_189205.1 CDS SERP1640 NC_002976.3 1663368 1671641 D identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760; M23/M37 peptidase domain-containing protein 1663368..1671641 Staphylococcus epidermidis RP62A 3241625 YP_189206.1 CDS SERP1641 NC_002976.3 1671663 1673744 D hypothetical protein 1671663..1673744 Staphylococcus epidermidis RP62A 3241635 YP_189207.1 CDS SERP1642 NC_002976.3 1673805 1681850 D hypothetical protein 1673805..1681850 Staphylococcus epidermidis RP62A 3241636 YP_189208.1 CDS SERP1643 NC_002976.3 1681853 1682227 D hypothetical protein 1681853..1682227 Staphylococcus epidermidis RP62A 3241637 YP_189209.1 CDS SERP1644 NC_002976.3 1682220 1682387 D hypothetical protein 1682220..1682387 Staphylococcus epidermidis RP62A 3241638 YP_189210.1 CDS SERP1645 NC_002976.3 1682429 1685098 D identified by similarity to OMNI:NTL02SA1962; hypothetical protein 1682429..1685098 Staphylococcus epidermidis RP62A 3241639 YP_189211.1 CDS SERP1646 NC_002976.3 1685145 1685606 D hypothetical protein 1685145..1685606 Staphylococcus epidermidis RP62A 3241640 YP_189212.1 CDS SERP1647 NC_002976.3 1685588 1686100 D hypothetical protein 1685588..1686100 Staphylococcus epidermidis RP62A 3241641 YP_189213.1 CDS xhlB NC_002976.3 1686122 1686451 D identified by similarity to EGAD:18887; match to protein family HMM PF04688; match to protein family HMM TIGR01592; prophage, holin 1686122..1686451 Staphylococcus epidermidis RP62A 3241642 YP_189214.1 CDS SERP1649 NC_002976.3 1686503 1688896 D identified by match to protein family HMM PF00657; lipase/acylhydrolase domain-containing protein 1686503..1688896 Staphylococcus epidermidis RP62A 3241643 YP_189215.1 CDS SERP1650 NC_002976.3 1689084 1690475 D identified by match to protein family HMM PF01520; match to protein family HMM PF05257; prophage, amidase 1689084..1690475 Staphylococcus epidermidis RP62A 3240580 YP_189216.1 CDS SERP1651 NC_002976.3 1690551 1690751 R hypothetical protein complement(1690551..1690751) Staphylococcus epidermidis RP62A 3240581 YP_189217.1 CDS SERP1652 NC_002976.3 1691131 1691307 R hypothetical protein complement(1691131..1691307) Staphylococcus epidermidis RP62A 3240582 YP_189218.1 CDS SERP1653 NC_002976.3 1691446 1693092 R hypothetical protein complement(1691446..1693092) Staphylococcus epidermidis RP62A 3240583 YP_189219.1 CDS SERP1654 NC_002976.3 1693235 1693840 R identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(1693235..1693840) Staphylococcus epidermidis RP62A 3240584 YP_189220.1 CDS SERP1655 NC_002976.3 1694146 1694457 R identified by similarity to OMNI:NTL01SA1925; hypothetical protein complement(1694146..1694457) Staphylococcus epidermidis RP62A 3240585 YP_189221.1 CDS SERP1656 NC_002976.3 1694543 1694824 R hypothetical protein complement(1694543..1694824) Staphylococcus epidermidis RP62A 3240586 YP_189222.1 CDS SERP1657 NC_002976.3 1694970 1695605 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(1694970..1695605) Staphylococcus epidermidis RP62A 3240587 YP_189223.1 CDS SERP1658 NC_002976.3 1695953 1697887 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1695953..1697887 Staphylococcus epidermidis RP62A 3240588 YP_189224.1 CDS SERP1659 NC_002976.3 1698060 1698167 R hypothetical protein complement(1698060..1698167) Staphylococcus epidermidis RP62A 3240599 YP_189225.1 CDS SERP1660 NC_002976.3 1698229 1699845 D identified by match to protein family HMM PF00488; MutS family protein 1698229..1699845 Staphylococcus epidermidis RP62A 3240600 YP_189226.1 CDS SERP1661 NC_002976.3 1699928 1700950 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(1699928..1700950) Staphylococcus epidermidis RP62A 3240601 YP_189227.1 CDS SERP1662 NC_002976.3 1700947 1701384 R identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(1700947..1701384) Staphylococcus epidermidis RP62A 3240602 YP_189228.1 CDS SERP1663 NC_002976.3 1701381 1702043 R identified by match to protein family HMM PF00814; hypothetical protein complement(1701381..1702043) Staphylococcus epidermidis RP62A 3240603 YP_189229.1 CDS SERP1664 NC_002976.3 1702024 1702485 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1702024..1702485) Staphylococcus epidermidis RP62A 3240604 YP_189230.1 CDS ilvD NC_002976.3 1702964 1704652 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1702964..1704652 Staphylococcus epidermidis RP62A 3240605 YP_189231.1 CDS ilvB NC_002976.3 1704708 1706411 D identified by similarity to SP:P37251; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase, large subunit, biosynthetic type 1704708..1706411 Staphylococcus epidermidis RP62A 3240606 YP_189232.1 CDS SERP1667 NC_002976.3 1706411 1706644 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small; acetolactate synthase 1 regulatory subunit 1706411..1706644 Staphylococcus epidermidis RP62A 3240616 YP_189233.1 CDS ilvC NC_002976.3 1706761 1707765 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1706761..1707765 Staphylococcus epidermidis RP62A 3240617 YP_189234.1 CDS leuA NC_002976.3 1707788 1709323 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1707788..1709323 Staphylococcus epidermidis RP62A 3240618 YP_189235.1 CDS leuB NC_002976.3 1709320 1710363 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1709320..1710363 Staphylococcus epidermidis RP62A 3240619 YP_189236.1 CDS leuC NC_002976.3 1710379 1711749 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1710379..1711749 Staphylococcus epidermidis RP62A 3240620 YP_189237.1 CDS leuD NC_002976.3 1711750 1712319 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1711750..1712319 Staphylococcus epidermidis RP62A 3240621 YP_189238.1 CDS ilvA NC_002976.3 1712334 1713602 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 1712334..1713602 Staphylococcus epidermidis RP62A 3240622 YP_189239.1 CDS SERP1674 NC_002976.3 1713700 1713810 R hypothetical protein complement(1713700..1713810) Staphylococcus epidermidis RP62A 3242697 YP_189240.1 CDS SERP1675 NC_002976.3 1719919 1720374 R identified by match to protein family HMM PF03926; hypothetical protein complement(1719919..1720374) Staphylococcus epidermidis RP62A 3242698 YP_189241.1 CDS SERP1676 NC_002976.3 1720367 1722517 R identified by similarity to EGAD:101821; match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(1720367..1722517) Staphylococcus epidermidis RP62A 3242699 YP_189242.1 CDS rpoF NC_002976.3 1722805 1723575 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB complement(1722805..1723575) Staphylococcus epidermidis RP62A 3242700 YP_189243.1 CDS rsbW NC_002976.3 1723550 1724029 R binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW complement(1723550..1724029) Staphylococcus epidermidis RP62A 3242701 YP_189244.1 CDS rsbV NC_002976.3 1724031 1724357 R identified by similarity to EGAD:18426; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor RsbV complement(1724031..1724357) Staphylococcus epidermidis RP62A 3242702 YP_189245.1 CDS rsbU NC_002976.3 1724457 1725458 R identified by similarity to GP:1729794; sigma factor B regulator protein complement(1724457..1725458) Staphylococcus epidermidis RP62A 3242703 YP_189246.1 CDS SERP1681 NC_002976.3 1725803 1726165 R identified by match to protein family HMM PF02452; PemK family transcriptional regulator complement(1725803..1726165) Staphylococcus epidermidis RP62A 3242704 YP_189247.1 CDS SERP1682 NC_002976.3 1726162 1726332 R identified by similarity to OMNI:SA2059; hypothetical protein complement(1726162..1726332) Staphylococcus epidermidis RP62A 3242712 YP_189248.1 CDS alr NC_002976.3 1726419 1727567 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(1726419..1727567) Staphylococcus epidermidis RP62A 3242713 YP_189249.1 CDS acpS NC_002976.3 1727634 1727987 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1727634..1727987) Staphylococcus epidermidis RP62A 3242714 YP_189250.1 CDS SERP1685 NC_002976.3 1728035 1728544 R identified by match to protein family HMM PF03703; hypothetical protein complement(1728035..1728544) Staphylococcus epidermidis RP62A 3242715 YP_189251.1 CDS SERP1686 NC_002976.3 1728531 1730036 R identified by match to protein family HMM PF03703; hypothetical protein complement(1728531..1730036) Staphylococcus epidermidis RP62A 3242716 YP_189252.1 CDS SERP1687 NC_002976.3 1730029 1730508 R identified by match to protein family HMM PF03703; hypothetical protein complement(1730029..1730508) Staphylococcus epidermidis RP62A 3242717 YP_189253.1 CDS SERP1688 NC_002976.3 1730758 1732287 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD-box ATP dependent DNA helicase complement(1730758..1732287) Staphylococcus epidermidis RP62A 3242718 YP_189254.1 CDS murF NC_002976.3 1732587 1733942 R identified by similarity to EGAD:108108; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1732587..1733942) Staphylococcus epidermidis RP62A 3242719 YP_189255.1 CDS ddl NC_002976.3 1733954 1735027 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1733954..1735027) Staphylococcus epidermidis RP62A 3242727 YP_189256.1 CDS SERP1691 NC_002976.3 1735418 1736629 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 1735418..1736629 Staphylococcus epidermidis RP62A 3242728 YP_189257.1 CDS SERP1692 NC_002976.3 1736728 1736865 R identified by similarity to OMNI:SA2076; hypothetical protein complement(1736728..1736865) Staphylococcus epidermidis RP62A 3242729 YP_189258.1 CDS SERP1693 NC_002976.3 1737008 1737217 R identified by similarity to OMNI:SA2077; hypothetical protein complement(1737008..1737217) Staphylococcus epidermidis RP62A 3242730 YP_189259.1 CDS SERP1694 NC_002976.3 1737224 1737517 R identified by similarity to OMNI:SA2078; match to protein family HMM PF02583; hypothetical protein complement(1737224..1737517) Staphylococcus epidermidis RP62A 3242731 YP_189260.1 CDS cls-2 NC_002976.3 1737709 1739175 D identified by match to protein family HMM PF00614; cardiolipin synthetase 1737709..1739175 Staphylococcus epidermidis RP62A 3242732 YP_189261.1 CDS SERP1696 NC_002976.3 1739357 1740010 D identified by match to protein family HMM PF01966; HD domain-containing protein 1739357..1740010 Staphylococcus epidermidis RP62A 3242733 YP_189262.1 CDS SERP1697 NC_002976.3 1740116 1740988 R identified by match to protein family HMM PF02096; hypothetical protein complement(1740116..1740988) Staphylococcus epidermidis RP62A 3242734 YP_189263.1 CDS thiE NC_002976.3 1741077 1741718 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(1741077..1741718) Staphylococcus epidermidis RP62A 3242743 YP_189264.1 CDS thiM NC_002976.3 1741721 1742509 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(1741721..1742509) Staphylococcus epidermidis RP62A 3242744 YP_189265.1 CDS thiD-2 NC_002976.3 1742502 1743323 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(1742502..1743323) Staphylococcus epidermidis RP62A 3242122 YP_189266.1 CDS SERP1701 NC_002976.3 1743316 1744005 R identified by match to protein family HMM PF03070; TenA family transcription regulator complement(1743316..1744005) Staphylococcus epidermidis RP62A 3242123 YP_189267.1 CDS sceD NC_002976.3 1744290 1744949 R identified by similarity to GP:2735513; sceD protein complement(1744290..1744949) Staphylococcus epidermidis RP62A 3242124 YP_189268.1 CDS SERP1703 NC_002976.3 1745337 1745732 R identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein family complement(1745337..1745732) Staphylococcus epidermidis RP62A 3242125 YP_189269.1 CDS ywpF NC_002976.3 1745923 1746363 D identified by similarity to OMNI:SA2090; hypothetical protein 1745923..1746363 Staphylococcus epidermidis RP62A 3242126 YP_189270.1 CDS fabZ NC_002976.3 1746681 1747118 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1746681..1747118) Staphylococcus epidermidis RP62A 3242127 YP_189271.1 CDS murAA NC_002976.3 1747152 1748417 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1747152..1748417) Staphylococcus epidermidis RP62A 3242136 YP_189272.1 CDS SERP1707 NC_002976.3 1748527 1748760 R hypothetical protein complement(1748527..1748760) Staphylococcus epidermidis RP62A 3242137 YP_189273.1 CDS atpC NC_002976.3 1748909 1749313 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(1748909..1749313) Staphylococcus epidermidis RP62A 3242138 YP_189274.1 CDS atpD NC_002976.3 1749333 1750745 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(1749333..1750745) Staphylococcus epidermidis RP62A 3242139 YP_189275.1 CDS atpG NC_002976.3 1750767 1751633 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(1750767..1751633) Staphylococcus epidermidis RP62A 3242140 YP_189276.1 CDS atpA NC_002976.3 1751718 1753229 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(1751718..1753229) Staphylococcus epidermidis RP62A 3242141 YP_189277.1 CDS atpH NC_002976.3 1753252 1753791 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(1753252..1753791) Staphylococcus epidermidis RP62A 3242142 YP_189278.1 CDS atpF NC_002976.3 1753791 1754306 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B complement(1753791..1754306) Staphylococcus epidermidis RP62A 3242150 YP_189279.1 CDS atpE NC_002976.3 1754404 1754616 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(1754404..1754616) Staphylococcus epidermidis RP62A 3242151 YP_189280.1 CDS atpB NC_002976.3 1754659 1755387 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(1754659..1755387) Staphylococcus epidermidis RP62A 3242152 YP_189281.1 CDS SERP1717 NC_002976.3 1755916 1757061 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase complement(1755916..1757061) Staphylococcus epidermidis RP62A 3242154 YP_189282.1 CDS upp NC_002976.3 1757086 1757715 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1757086..1757715) Staphylococcus epidermidis RP62A 3242155 YP_189283.1 CDS glyA NC_002976.3 1757744 1758982 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1757744..1758982) Staphylococcus epidermidis RP62A 3242156 YP_189284.1 CDS SERP1720 NC_002976.3 1759007 1759531 R identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein complement(1759007..1759531) Staphylococcus epidermidis RP62A 3242165 YP_189285.1 CDS SERP1721 NC_002976.3 1759641 1760060 R identified by similarity to EGAD:30369; match to protein family HMM PF01451; phosphotyrosine protein phosphatase complement(1759641..1760060) Staphylococcus epidermidis RP62A 3242166 YP_189286.1 CDS SERP1722 NC_002976.3 1760057 1761100 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(1760057..1761100) Staphylococcus epidermidis RP62A 3242695 YP_189287.1 CDS SERP1723 NC_002976.3 1761076 1761228 R hypothetical protein complement(1761076..1761228) Staphylococcus epidermidis RP62A 3242696 YP_189288.1 CDS SERP1724 NC_002976.3 1761263 1762099 R identified by match to protein family HMM TIGR00536; HemK family modification methylase complement(1761263..1762099) Staphylococcus epidermidis RP62A 3242705 YP_189289.1 CDS prfA NC_002976.3 1762086 1763162 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1762086..1763162) Staphylococcus epidermidis RP62A 3242706 YP_189290.1 CDS tdk NC_002976.3 1763162 1763761 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1763162..1763761) Staphylococcus epidermidis RP62A 3242707 YP_189291.1 CDS rpmE2 NC_002976.3 1764048 1764305 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1764048..1764305) Staphylococcus epidermidis RP62A 3242708 YP_189292.1 CDS rho NC_002976.3 1764422 1765738 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1764422..1765738) Staphylococcus epidermidis RP62A 3242709 YP_189293.1 CDS SERP1729 NC_002976.3 1766042 1767469 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(1766042..1767469) Staphylococcus epidermidis RP62A 3242710 YP_189294.1 CDS SERP1730 NC_002976.3 1767779 1768792 R RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase complement(1767779..1768792) Staphylococcus epidermidis RP62A 3242711 YP_189295.1 CDS murAB NC_002976.3 1769457 1770716 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1769457..1770716) Staphylococcus epidermidis RP62A 3242720 YP_189296.1 CDS fbaA NC_002976.3 1771077 1771937 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase complement(1771077..1771937) Staphylococcus epidermidis RP62A 3242721 YP_189297.1 CDS SERP1733 NC_002976.3 1772157 1772678 D identified by similarity to OMNI:NTL01SA2005; hypothetical protein 1772157..1772678 Staphylococcus epidermidis RP62A 3242722 YP_189298.1 CDS pyrG NC_002976.3 1772905 1774512 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1772905..1774512) Staphylococcus epidermidis RP62A 3242723 YP_189299.1 CDS rpoE NC_002976.3 1774849 1775385 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(1774849..1775385) Staphylococcus epidermidis RP62A 3242724 YP_189300.1 CDS SERP1736 NC_002976.3 1775496 1776356 R identified by match to protein family HMM PF00583; acetyltransferase complement(1775496..1776356) Staphylococcus epidermidis RP62A 3242725 YP_189301.1 CDS SERP1737 NC_002976.3 1776659 1777456 D catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 1776659..1777456 Staphylococcus epidermidis RP62A 3242726 YP_189302.1 CDS SERP1738 NC_002976.3 1777677 1778342 R identified by similarity to OMNI:SA2123; hypothetical protein complement(1777677..1778342) Staphylococcus epidermidis RP62A 3242735 YP_189303.1 CDS SERP1739 NC_002976.3 1778516 1779706 R identified by similarity to OMNI:SA2124; hypothetical protein complement(1778516..1779706) Staphylococcus epidermidis RP62A 3242736 YP_189304.1 CDS SERP1740 NC_002976.3 1779706 1780890 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase complement(1779706..1780890) Staphylococcus epidermidis RP62A 3242737 YP_189305.1 CDS luxS NC_002976.3 1781118 1781588 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1781118..1781588 Staphylococcus epidermidis RP62A 3242738 YP_189306.1 CDS SERP1742 NC_002976.3 1781739 1782089 R identified by similarity to GP:14247908; hypothetical protein complement(1781739..1782089) Staphylococcus epidermidis RP62A 3242739 YP_189307.1 CDS deoB NC_002976.3 1782086 1783276 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(1782086..1783276) Staphylococcus epidermidis RP62A 3242740 YP_189308.1 CDS pdp NC_002976.3 1783289 1784590 R Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase complement(1783289..1784590) Staphylococcus epidermidis RP62A 3242741 YP_189309.1 CDS deoC NC_002976.3 1784623 1785285 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(1784623..1785285) Staphylococcus epidermidis RP62A 3242742 YP_189310.1 CDS SERP1746 NC_002976.3 1785278 1785397 R hypothetical protein complement(1785278..1785397) Staphylococcus epidermidis RP62A 3242128 YP_189311.1 CDS deoD NC_002976.3 1785492 1786202 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1785492..1786202 Staphylococcus epidermidis RP62A 3242129 YP_189312.1 CDS SERP1748 NC_002976.3 1786326 1786772 R identified by match to protein family HMM PF00210; match to protein family HMM PF02047; Dps family protein complement(1786326..1786772) Staphylococcus epidermidis RP62A 3242130 YP_189313.1 CDS SERP1749 NC_002976.3 1786960 1787370 R identified by similarity to OMNI:SA2132; hypothetical protein complement(1786960..1787370) Staphylococcus epidermidis RP62A 3242131 YP_189314.1 CDS SERP1750 NC_002976.3 1787551 1788927 R identified by similarity to OMNI:NTL01SA2020; hypothetical protein complement(1787551..1788927) Staphylococcus epidermidis RP62A 3242132 YP_189315.1 CDS SERP1751 NC_002976.3 1789160 1789387 R identified by similarity to OMNI:SA2134; hypothetical protein complement(1789160..1789387) Staphylococcus epidermidis RP62A 3242133 YP_189316.1 CDS manA-1 NC_002976.3 1789442 1790380 R identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(1789442..1790380) Staphylococcus epidermidis RP62A 3242134 YP_189317.1 CDS SERP1753 NC_002976.3 1790675 1790824 R hypothetical protein complement(1790675..1790824) Staphylococcus epidermidis RP62A 3242135 YP_189318.1 CDS SERP1754 NC_002976.3 1791022 1791678 R identified by similarity to OMNI:NTL01SA2023; hypothetical protein complement(1791022..1791678) Staphylococcus epidermidis RP62A 3242143 YP_189319.1 CDS czrA NC_002976.3 1791823 1792164 D identified by similarity to OMNI:SA2137; match to protein family HMM PF01022; CzrA family transcriptional regulator 1791823..1792164 Staphylococcus epidermidis RP62A 3242144 YP_189320.1 CDS SERP1756 NC_002976.3 1792151 1793104 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1792151..1793104 Staphylococcus epidermidis RP62A 3242145 YP_189321.1 CDS SERP1757 NC_002976.3 1793365 1794096 R identified by similarity to EGAD:165239; match to protein family HMM PF00149; hypothetical protein complement(1793365..1794096) Staphylococcus epidermidis RP62A 3242146 YP_189322.1 CDS SERP1758 NC_002976.3 1794229 1795380 D lytic regulatory protein 1794229..1795380 Staphylococcus epidermidis RP62A 3242147 YP_189323.1 CDS SERP1759 NC_002976.3 1795685 1796554 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD-superfamily cof-like hydrolase complement(1795685..1796554) Staphylococcus epidermidis RP62A 3242148 YP_189324.1 CDS glmS NC_002976.3 1797037 1798842 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1797037..1798842) Staphylococcus epidermidis RP62A 3242149 YP_189325.1 CDS SERP1761 NC_002976.3 1798883 1799038 R hypothetical protein complement(1798883..1799038) Staphylococcus epidermidis RP62A 3242157 YP_189326.1 CDS glmM NC_002976.3 1799474 1800829 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1799474..1800829) Staphylococcus epidermidis RP62A 3242158 YP_189327.1 CDS SERP1763 NC_002976.3 1800854 1801789 R hypothetical protein complement(1800854..1801789) Staphylococcus epidermidis RP62A 3242159 YP_189328.1 CDS SERP1764 NC_002976.3 1801790 1802599 R identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(1801790..1802599) Staphylococcus epidermidis RP62A 3242160 YP_189329.1 CDS SERP1765 NC_002976.3 1808640 1809707 R ATP-binding Mrp/Nbp35 family protein complement(1808640..1809707) Staphylococcus epidermidis RP62A 3242161 YP_189330.1 CDS SERP1766 NC_002976.3 1809858 1811297 R identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(1809858..1811297) Staphylococcus epidermidis RP62A 3242162 YP_189331.1 CDS SERP1767 NC_002976.3 1811567 1812037 R identified by similarity to OMNI:SA2158; hypothetical protein complement(1811567..1812037) Staphylococcus epidermidis RP62A 3242163 YP_189332.1 CDS SERP1768 NC_002976.3 1812225 1813562 R drug transporter complement(1812225..1813562) Staphylococcus epidermidis RP62A 3242164 YP_189333.1 CDS SERP1769 NC_002976.3 1813801 1814484 R identified by similarity to EGAD:38000; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(1813801..1814484) Staphylococcus epidermidis RP62A 3242173 YP_189334.1 CDS SERP1770 NC_002976.3 1814503 1815690 R identified by match to protein family HMM PF01704; UTP-glucose-1-phosphate uridylyltransferase complement(1814503..1815690) Staphylococcus epidermidis RP62A 3241227 YP_189335.1 CDS SERP1771 NC_002976.3 1815745 1816254 R identified by match to protein family HMM PF04307; hypothetical protein complement(1815745..1816254) Staphylococcus epidermidis RP62A 3241228 YP_189336.1 CDS SERP1772 NC_002976.3 1816431 1816691 D identified by similarity to GP:14247946; hypothetical protein 1816431..1816691 Staphylococcus epidermidis RP62A 3241229 YP_189337.1 CDS SERP1773 NC_002976.3 1816844 1817158 D iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1816844..1817158 Staphylococcus epidermidis RP62A 3241230 YP_189338.1 CDS SERP1774 NC_002976.3 1817337 1818710 R hypothetical protein complement(1817337..1818710) Staphylococcus epidermidis RP62A 3241231 YP_189339.1 CDS SERP1775 NC_002976.3 1819007 1819972 R identified by match to protein family HMM PF01032; iron ABC transporter permease complement(1819007..1819972) Staphylococcus epidermidis RP62A 3241232 YP_189340.1 CDS SERP1776 NC_002976.3 1819969 1821000 R identified by similarity to GP:9743645; match to protein family HMM PF01032; iron ABC transporter permease complement(1819969..1821000) Staphylococcus epidermidis RP62A 3241233 YP_189341.1 CDS SERP1777 NC_002976.3 1821012 1822007 R identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein complement(1821012..1822007) Staphylococcus epidermidis RP62A 3241243 YP_189342.1 CDS SERP1778 NC_002976.3 1822209 1823270 R identified by similarity to OMNI:NTL01SA2063; match to protein family HMM PF01168; hypothetical protein complement(1822209..1823270) Staphylococcus epidermidis RP62A 3241244 YP_189343.1 CDS SERP1779 NC_002976.3 1823274 1825031 R identified by similarity to OMNI:SA2169; match to protein family HMM PF04183; hypothetical protein complement(1823274..1825031) Staphylococcus epidermidis RP62A 3241245 YP_189344.1 CDS SERP1780 NC_002976.3 1825021 1826202 R transporter complement(1825021..1826202) Staphylococcus epidermidis RP62A 3241246 YP_189345.1 CDS SERP1781 NC_002976.3 1826305 1828266 D identified by similarity to OMNI:NTL01SA2066; match to protein family HMM PF04183; hypothetical protein 1826305..1828266 Staphylococcus epidermidis RP62A 3241247 YP_189346.1 CDS SERP1782 NC_002976.3 1828323 1828823 R identified by similarity to EGAD:40949; match to protein family HMM PF03780; alkaline shock protein 23 complement(1828323..1828823) Staphylococcus epidermidis RP62A 3241248 YP_189347.1 CDS SERP1783 NC_002976.3 1828897 1829136 R identified by similarity to OMNI:SA2174; hypothetical protein complement(1828897..1829136) Staphylococcus epidermidis RP62A 3241249 YP_189348.1 CDS SERP1784 NC_002976.3 1829149 1829685 R identified by similarity to OMNI:NTL01SA2069; hypothetical protein complement(1829149..1829685) Staphylococcus epidermidis RP62A 3241250 YP_189349.1 CDS SERP1785 NC_002976.3 1830481 1831491 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(1830481..1831491) Staphylococcus epidermidis RP62A 3241260 YP_189350.1 CDS SERP1786 NC_002976.3 1831590 1832594 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(1831590..1832594) Staphylococcus epidermidis RP62A 3241261 YP_189351.1 CDS SERP1788 NC_002976.3 1833830 1834696 R hypothetical protein complement(1833830..1834696) Staphylococcus epidermidis RP62A 3241263 YP_189352.1 CDS lacG NC_002976.3 1834967 1836379 R catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase complement(1834967..1836379) Staphylococcus epidermidis RP62A 3241264 YP_189353.1 CDS lacE NC_002976.3 1836395 1838143 R identified by similarity to EGAD:15299; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00850; match to protein family HMM TIGR00853; PTS system, lactose-specific IIBC components complement(1836395..1838143) Staphylococcus epidermidis RP62A 3241265 YP_189354.1 CDS lacF NC_002976.3 1838149 1838463 R identified by similarity to SP:P23532; match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system, lactose-specific IIA component complement(1838149..1838463) Staphylococcus epidermidis RP62A 3241266 YP_189355.1 CDS lacD NC_002976.3 1838483 1839460 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(1838483..1839460) Staphylococcus epidermidis RP62A 3241276 YP_189356.1 CDS lacC NC_002976.3 1839464 1840396 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(1839464..1840396) Staphylococcus epidermidis RP62A 3241277 YP_189357.1 CDS lacB NC_002976.3 1840409 1840924 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(1840409..1840924) Staphylococcus epidermidis RP62A 3241278 YP_189358.1 CDS lacA NC_002976.3 1840939 1841367 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(1840939..1841367) Staphylococcus epidermidis RP62A 3241956 YP_189359.1 CDS lacR NC_002976.3 1841734 1842489 R identified by similarity to SP:P16644; match to protein family HMM PF00455; lactose phosphotransferase system repressor complement(1841734..1842489) Staphylococcus epidermidis RP62A 3241957 YP_189360.1 CDS SERP1797 NC_002976.3 1842789 1843529 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1842789..1843529 Staphylococcus epidermidis RP62A 3241958 YP_189361.1 CDS rpsI NC_002976.3 1843791 1844183 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1843791..1844183) Staphylococcus epidermidis RP62A 3241959 YP_189362.1 CDS rplM NC_002976.3 1844203 1844640 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1844203..1844640) Staphylococcus epidermidis RP62A 3241968 YP_189363.1 CDS truA NC_002976.3 1844901 1845704 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1844901..1845704) Staphylococcus epidermidis RP62A 3241969 YP_189364.1 CDS SERP1801 NC_002976.3 1845708 1846514 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(1845708..1846514) Staphylococcus epidermidis RP62A 3241970 YP_189365.1 CDS cbiO NC_002976.3 1846504 1847364 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1846504..1847364) Staphylococcus epidermidis RP62A 3241971 YP_189366.1 CDS cbiO NC_002976.3 1847361 1848170 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(1847361..1848170) Staphylococcus epidermidis RP62A 3241972 YP_189367.1 CDS rplQ NC_002976.3 1848501 1848869 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1848501..1848869) Staphylococcus epidermidis RP62A 3241973 YP_189368.1 CDS rpoA NC_002976.3 1848886 1849830 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1848886..1849830) Staphylococcus epidermidis RP62A 3241974 YP_189369.1 CDS rpsK NC_002976.3 1849907 1850296 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1849907..1850296) Staphylococcus epidermidis RP62A 3242167 YP_189370.1 CDS rpsM NC_002976.3 1850319 1850684 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1850319..1850684) Staphylococcus epidermidis RP62A 3242168 YP_189371.1 CDS rpmJ NC_002976.3 1850707 1850820 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1850707..1850820) Staphylococcus epidermidis RP62A 3242169 YP_189372.1 CDS infA NC_002976.3 1850852 1851070 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1850852..1851070) Staphylococcus epidermidis RP62A 3242170 YP_189373.1 CDS adk NC_002976.3 1851258 1851905 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1851258..1851905) Staphylococcus epidermidis RP62A 3242171 YP_189374.1 CDS secY NC_002976.3 1851923 1853215 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1851923..1853215) Staphylococcus epidermidis RP62A 3242172 YP_189375.1 CDS rplO NC_002976.3 1853215 1853655 R late assembly protein; 50S ribosomal protein L15 complement(1853215..1853655) Staphylococcus epidermidis RP62A 3241234 YP_189376.1 CDS rpmD NC_002976.3 1853672 1853854 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1853672..1853854) Staphylococcus epidermidis RP62A 3241235 YP_189377.1 CDS rpsE NC_002976.3 1853871 1854371 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1853871..1854371) Staphylococcus epidermidis RP62A 3241236 YP_189378.1 CDS rplR NC_002976.3 1854391 1854753 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1854391..1854753) Staphylococcus epidermidis RP62A 3241237 YP_189379.1 CDS rplF NC_002976.3 1854785 1855321 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1854785..1855321) Staphylococcus epidermidis RP62A 3241238 YP_189380.1 CDS rpsH NC_002976.3 1855346 1855744 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1855346..1855744) Staphylococcus epidermidis RP62A 3241239 YP_189381.1 CDS rpsN NC_002976.3 1855775 1855960 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1855775..1855960) Staphylococcus epidermidis RP62A 3241240 YP_189382.1 CDS rplE NC_002976.3 1855983 1856522 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1855983..1856522) Staphylococcus epidermidis RP62A 3241241 YP_189383.1 CDS rplX NC_002976.3 1856548 1856865 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1856548..1856865) Staphylococcus epidermidis RP62A 3241242 YP_189384.1 CDS rplN NC_002976.3 1856907 1857275 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1856907..1857275) Staphylococcus epidermidis RP62A 3241251 YP_189385.1 CDS rpsQ NC_002976.3 1857306 1857569 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1857306..1857569) Staphylococcus epidermidis RP62A 3241252 YP_189386.1 CDS rpmC NC_002976.3 1857594 1857803 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1857594..1857803) Staphylococcus epidermidis RP62A 3241253 YP_189387.1 CDS rplP NC_002976.3 1857793 1858227 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1857793..1858227) Staphylococcus epidermidis RP62A 3241254 YP_189388.1 CDS rpsC NC_002976.3 1858230 1858883 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1858230..1858883) Staphylococcus epidermidis RP62A 3241255 YP_189389.1 CDS rplV NC_002976.3 1858907 1859260 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1858907..1859260) Staphylococcus epidermidis RP62A 3241256 YP_189390.1 CDS rpsS NC_002976.3 1859288 1859566 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1859288..1859566) Staphylococcus epidermidis RP62A 3241257 YP_189391.1 CDS rplB NC_002976.3 1859633 1860466 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1859633..1860466) Staphylococcus epidermidis RP62A 3241258 YP_189392.1 CDS rplW NC_002976.3 1860495 1860770 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1860495..1860770) Staphylococcus epidermidis RP62A 3241259 YP_189393.1 CDS rplD NC_002976.3 1860770 1861393 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1860770..1861393) Staphylococcus epidermidis RP62A 3241267 YP_189394.1 CDS rplC NC_002976.3 1861422 1862084 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1861422..1862084) Staphylococcus epidermidis RP62A 3241268 YP_189395.1 CDS rpsJ NC_002976.3 1862112 1862420 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1862112..1862420) Staphylococcus epidermidis RP62A 3241269 YP_189396.1 CDS SERP1833 NC_002976.3 1862552 1862665 R hypothetical protein complement(1862552..1862665) Staphylococcus epidermidis RP62A 3241270 YP_189397.1 CDS SERP1834 NC_002976.3 1862776 1863174 D identified by similarity to OMNI:SA2241; hypothetical protein 1862776..1863174 Staphylococcus epidermidis RP62A 3241271 YP_189398.1 CDS SERP1835 NC_002976.3 1863231 1864565 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(1863231..1864565) Staphylococcus epidermidis RP62A 3241272 YP_189399.1 CDS topB NC_002976.3 1864678 1866813 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1864678..1866813) Staphylococcus epidermidis RP62A 3241273 YP_189400.1 CDS SERP1837 NC_002976.3 1866982 1867131 R hypothetical protein complement(1866982..1867131) Staphylococcus epidermidis RP62A 3241274 YP_189401.1 CDS SERP1838 NC_002976.3 1867104 1867967 D sugar transporter 1867104..1867967 Staphylococcus epidermidis RP62A 3241275 YP_189402.1 CDS gdh NC_002976.3 1867995 1868786 D identified by similarity to EGAD:23230; match to protein family HMM PF00106; match to protein family HMM PF00678; glucose 1-dehydrogenase 1867995..1868786 Staphylococcus epidermidis RP62A 3241960 YP_189403.1 CDS SERP1840 NC_002976.3 1868981 1869889 R identified by similarity to OMNI:NTL01SA2143; match to protein family HMM PF03547; hypothetical protein complement(1868981..1869889) Staphylococcus epidermidis RP62A 3241961 YP_189404.1 CDS SERP1841 NC_002976.3 1870031 1870201 D identified by similarity to OMNI:NTL01SA2144; hypothetical protein 1870031..1870201 Staphylococcus epidermidis RP62A 3241962 YP_189405.1 CDS SERP1842 NC_002976.3 1870493 1870810 D identified by similarity to OMNI:SA2251; hypothetical protein 1870493..1870810 Staphylococcus epidermidis RP62A 3241963 YP_189406.1 CDS SERP1843 NC_002976.3 1870861 1874016 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(1870861..1874016) Staphylococcus epidermidis RP62A 3241964 YP_189407.1 CDS femX NC_002976.3 1874093 1875343 R identified by similarity to GP:6492111; match to protein family HMM PF02388; femX protein complement(1874093..1875343) Staphylococcus epidermidis RP62A 3241965 YP_189408.1 CDS SERP1845 NC_002976.3 1875743 1876504 R identified by similarity to OMNI:NTL01SA2149; hypothetical protein complement(1875743..1876504) Staphylococcus epidermidis RP62A 3241966 YP_189409.1 CDS SERP1846 NC_002976.3 1876667 1877107 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1876667..1877107 Staphylococcus epidermidis RP62A 3241967 YP_189410.1 CDS SERP1847 NC_002976.3 1877107 1878300 D identified by match to protein family HMM PF00083; drug transporter 1877107..1878300 Staphylococcus epidermidis RP62A 3241976 YP_189411.1 CDS sarV NC_002976.3 1879141 1879491 R identified by match to protein family HMM TIGR01889; accessory regulator V complement(1879141..1879491) Staphylococcus epidermidis RP62A 3241978 YP_189412.1 CDS moaA NC_002976.3 1879893 1880915 R identified by similarity to EGAD:15818; match to protein family HMM PF01444; match to protein family HMM PF04055; molybdenum cofactor biosynthesis protein A complement(1879893..1880915) Staphylococcus epidermidis RP62A 3241979 YP_189413.1 CDS mobA NC_002976.3 1880928 1881542 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1880928..1881542) Staphylococcus epidermidis RP62A 3241980 YP_189414.1 CDS moaD NC_002976.3 1881539 1881772 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor, subunit 1 complement(1881539..1881772) Staphylococcus epidermidis RP62A 3241981 YP_189415.1 CDS moaE NC_002976.3 1881769 1882221 R identified by match to protein family HMM PF02391; molybdenum cofactor biosynthesis protein E complement(1881769..1882221) Staphylococcus epidermidis RP62A 3241982 YP_189416.1 CDS mobB NC_002976.3 1882222 1882698 R identified by similarity to EGAD:107851; match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B complement(1882222..1882698) Staphylococcus epidermidis RP62A 3241991 YP_189417.1 CDS SERP1855 NC_002976.3 1882695 1883954 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein complement(1882695..1883954) Staphylococcus epidermidis RP62A 3241992 YP_189418.1 CDS moaC NC_002976.3 1884016 1884504 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1884016..1884504 Staphylococcus epidermidis RP62A 3241993 YP_189419.1 CDS moaB NC_002976.3 1884565 1885095 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B complement(1884565..1885095) Staphylococcus epidermidis RP62A 3241994 YP_189420.1 CDS SERP1858 NC_002976.3 1885116 1886117 R identified by match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis MoeB protein complement(1885116..1886117) Staphylococcus epidermidis RP62A 3241995 YP_189421.1 CDS modC NC_002976.3 1886193 1886813 R identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein ModC complement(1886193..1886813) Staphylococcus epidermidis RP62A 3241996 YP_189422.1 CDS modB NC_002976.3 1886814 1887485 R identified by similarity to SP:P09834; match to protein family HMM PF00528; molybdenum ABC transporter permease ModB complement(1886814..1887485) Staphylococcus epidermidis RP62A 3242005 YP_189423.1 CDS modA NC_002976.3 1887499 1888284 R identified by match to protein family HMM PF01547; match to protein family HMM PF03697; match to protein family HMM TIGR01256; molybdenum ABC transporter molybdenum-binding protein ModA complement(1887499..1888284) Staphylococcus epidermidis RP62A 3242006 YP_189424.1 CDS SERP1863 NC_002976.3 1889405 1890160 R identified by match to protein family HMM PF00583; acetyltransferase complement(1889405..1890160) Staphylococcus epidermidis RP62A 3242008 YP_189425.1 CDS SERP1864 NC_002976.3 1890197 1890745 R identified by match to protein family HMM PF02632; BioY family protein complement(1890197..1890745) Staphylococcus epidermidis RP62A 3241855 YP_189426.1 CDS SERP1865 NC_002976.3 1890855 1891796 R identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein complement(1890855..1891796) Staphylococcus epidermidis RP62A 3241856 YP_189427.1 CDS SERP1866 NC_002976.3 1892115 1893260 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(1892115..1893260) Staphylococcus epidermidis RP62A 3241857 YP_189428.1 CDS SERP1867 NC_002976.3 1893274 1893408 D hypothetical protein 1893274..1893408 Staphylococcus epidermidis RP62A 3241864 YP_189429.1 CDS SERP1868 NC_002976.3 1893690 1894592 R identified by match to protein family HMM PF03253; transporter complement(1893690..1894592) Staphylococcus epidermidis RP62A 3241865 YP_189430.1 CDS ureA NC_002976.3 1894860 1895162 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 1894860..1895162 Staphylococcus epidermidis RP62A 3241866 YP_189431.1 CDS ureB NC_002976.3 1895176 1895577 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 1895176..1895577 Staphylococcus epidermidis RP62A 3241867 YP_189432.1 CDS ureC NC_002976.3 1895580 1897295 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1895580..1897295 Staphylococcus epidermidis RP62A 3241868 YP_189433.1 CDS ureE NC_002976.3 1897309 1897761 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 1897309..1897761 Staphylococcus epidermidis RP62A 3241869 YP_189434.1 CDS ureF NC_002976.3 1897754 1898443 D identified by similarity to EGAD:8726; match to protein family HMM PF01730; urease accessory protein UreF 1897754..1898443 Staphylococcus epidermidis RP62A 3241870 YP_189435.1 CDS ureG NC_002976.3 1898456 1899070 D identified by similarity to EGAD:6421; match to protein family HMM PF01495; match to protein family HMM TIGR00101; urease accessory protein UreG 1898456..1899070 Staphylococcus epidermidis RP62A 3241871 YP_189436.1 CDS ureD NC_002976.3 1899070 1899906 D identified by similarity to EGAD:7142; match to protein family HMM PF01774; urease accessory protein UreD 1899070..1899906 Staphylococcus epidermidis RP62A 3241880 YP_189437.1 CDS sarR NC_002976.3 1900011 1900355 R identified by similarity to EGAD:42500; match to protein family HMM TIGR01889; accessory regulator R complement(1900011..1900355) Staphylococcus epidermidis RP62A 3241881 YP_189438.1 CDS SERP1877 NC_002976.3 1900760 1901083 R identified by similarity to OMNI:NTL01SA2181; hypothetical protein complement(1900760..1901083) Staphylococcus epidermidis RP62A 3241882 YP_189439.1 CDS sarY NC_002976.3 1901119 1901847 R identified by similarity to OMNI:NTL01SA2182; match to protein family HMM TIGR01889; accessory regulator Y complement(1901119..1901847) Staphylococcus epidermidis RP62A 3241883 YP_189440.1 CDS SERP1879 NC_002976.3 1901886 1903859 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1901886..1903859) Staphylococcus epidermidis RP62A 3241884 YP_189441.1 CDS SERP1880 NC_002976.3 1904431 1905204 D identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 1904431..1905204 Staphylococcus epidermidis RP62A 3241885 YP_189442.1 CDS nhaC NC_002976.3 1905653 1907050 R identified by similarity to SP:P27611; match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC complement(1905653..1907050) Staphylococcus epidermidis RP62A 3241886 YP_189443.1 CDS SERP1882 NC_002976.3 1907115 1908185 R identified by match to protein family HMM PF02317; NAD/NADP octopine/nopaline dehydrogenase family protein complement(1907115..1908185) Staphylococcus epidermidis RP62A 3241887 YP_189444.1 CDS SERP1883 NC_002976.3 1908567 1909061 D identified by similarity to OMNI:NTL01SA2188; hypothetical protein 1908567..1909061 Staphylococcus epidermidis RP62A 3241897 YP_189445.1 CDS SERP1884 NC_002976.3 1909383 1909856 D identified by match to protein family HMM PF05257; secretory antigen precursor SsaA 1909383..1909856 Staphylococcus epidermidis RP62A 3241898 YP_189446.1 CDS SERP1885 NC_002976.3 1909922 1910014 R hypothetical protein complement(1909922..1910014) Staphylococcus epidermidis RP62A 3241899 YP_189447.1 CDS sugE-1 NC_002976.3 1910009 1910335 D identified by similarity to SP:P30743; match to protein family HMM PF00893; sugE protein 1910009..1910335 Staphylococcus epidermidis RP62A 3241900 YP_189448.1 CDS sugE-2 NC_002976.3 1910341 1910658 D identified by match to protein family HMM PF00893; sugE protein 1910341..1910658 Staphylococcus epidermidis RP62A 3241901 YP_189449.1 CDS SERP1888 NC_002976.3 1910736 1911689 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1910736..1911689 Staphylococcus epidermidis RP62A 3241902 YP_189450.1 CDS SERP1889 NC_002976.3 1911830 1912954 R identified by match to protein family HMM PF01360; hypothetical protein complement(1911830..1912954) Staphylococcus epidermidis RP62A 3241903 YP_189451.1 CDS SERP1890 NC_002976.3 1913066 1913233 D hypothetical protein 1913066..1913233 Staphylococcus epidermidis RP62A 3241975 YP_189452.1 CDS SERP1891 NC_002976.3 1913337 1914113 R identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase complement(1913337..1914113) Staphylococcus epidermidis RP62A 3241983 YP_189453.1 CDS SERP1892 NC_002976.3 1914135 1914410 R hypothetical protein complement(1914135..1914410) Staphylococcus epidermidis RP62A 3241984 YP_189454.1 CDS SERP1893 NC_002976.3 1915044 1915994 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(1915044..1915994) Staphylococcus epidermidis RP62A 3241985 YP_189455.1 CDS SERP1894 NC_002976.3 1916183 1916998 R identified by match to protein family HMM PF00459; inositol monophosphatase complement(1916183..1916998) Staphylococcus epidermidis RP62A 3241986 YP_189456.1 CDS SERP1895 NC_002976.3 1917426 1918115 D DeoR family transcriptional regulator 1917426..1918115 Staphylococcus epidermidis RP62A 3241987 YP_189457.1 CDS SERP1896 NC_002976.3 1918294 1919040 R identified by match to protein family HMM PF02517; abortive infection family protein complement(1918294..1919040) Staphylococcus epidermidis RP62A 3241988 YP_189458.1 CDS SERP1897 NC_002976.3 1919092 1919427 D identified by similarity to OMNI:SA2307; hypothetical protein 1919092..1919427 Staphylococcus epidermidis RP62A 3241989 YP_189459.1 CDS SERP1898 NC_002976.3 1919607 1920659 D identified by similarity to GP:14245957; hypothetical protein 1919607..1920659 Staphylococcus epidermidis RP62A 3241990 YP_189460.1 CDS murQ NC_002976.3 1920656 1921543 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 1920656..1921543 Staphylococcus epidermidis RP62A 3241997 YP_189461.1 CDS SERP1900 NC_002976.3 1921556 1922980 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system, IIBC components 1921556..1922980 Staphylococcus epidermidis RP62A 3241998 YP_189462.1 CDS SERP1901 NC_002976.3 1922994 1923866 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator 1922994..1923866 Staphylococcus epidermidis RP62A 3241999 YP_189463.1 CDS SERP1902 NC_002976.3 1923989 1925365 R identified by match to protein family HMM PF00324; amino acid permease complement(1923989..1925365) Staphylococcus epidermidis RP62A 3242000 YP_189464.1 CDS SERP1903 NC_002976.3 1925480 1925578 R hypothetical protein complement(1925480..1925578) Staphylococcus epidermidis RP62A 3242001 YP_189465.1 CDS SERP1904 NC_002976.3 1925764 1926120 D identified by similarity to OMNI:SA2310; hypothetical protein 1925764..1926120 Staphylococcus epidermidis RP62A 3242002 YP_189466.1 CDS SERP1905 NC_002976.3 1926117 1926302 D hypothetical protein 1926117..1926302 Staphylococcus epidermidis RP62A 3242003 YP_189467.1 CDS SERP1906 NC_002976.3 1926619 1926807 R identified by similarity to OMNI:SA2312; hypothetical protein complement(1926619..1926807) Staphylococcus epidermidis RP62A 3242004 YP_189468.1 CDS SERP1907 NC_002976.3 1926825 1927460 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase complement(1926825..1927460) Staphylococcus epidermidis RP62A 3241858 YP_189469.1 CDS SERP1908 NC_002976.3 1927761 1928291 D identified by similarity to OMNI:SA2315; hypothetical protein 1927761..1928291 Staphylococcus epidermidis RP62A 3241859 YP_189470.1 CDS SERP1909 NC_002976.3 1928396 1929985 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, IIBC components complement(1928396..1929985) Staphylococcus epidermidis RP62A 3241860 YP_189471.1 CDS SERP1910 NC_002976.3 1930183 1930944 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; phosphosugar-binding transcriptional regulator 1930183..1930944 Staphylococcus epidermidis RP62A 3241861 YP_189472.1 CDS SERP1911 NC_002976.3 1931485 1932498 D RTD; identified by match to protein family HMM PF02371; ISSep1-like transposase 1931485..1932498 Staphylococcus epidermidis RP62A 3241862 YP_189473.1 CDS SERP1913 NC_002976.3 1933161 1933673 R identified by similarity to OMNI:SA2318; match to protein family HMM PF05146; hypothetical protein complement(1933161..1933673) Staphylococcus epidermidis RP62A 3241872 YP_189474.1 CDS SERP1914 NC_002976.3 1933970 1935271 R identified by similarity to EGAD:15401; match to protein family HMM PF03553; Na+/H+ antiporter complement(1933970..1935271) Staphylococcus epidermidis RP62A 3241873 YP_189475.1 CDS SERP1915 NC_002976.3 1935577 1936164 R identified by similarity to OMNI:SA2320; hypothetical protein complement(1935577..1936164) Staphylococcus epidermidis RP62A 3241874 YP_189476.1 CDS SERP1916 NC_002976.3 1936208 1936819 R identified by similarity to OMNI:NTL01SA2551; hypothetical protein complement(1936208..1936819) Staphylococcus epidermidis RP62A 3241875 YP_189477.1 CDS SERP1917 NC_002976.3 1937106 1937987 R identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase complement(1937106..1937987) Staphylococcus epidermidis RP62A 3241876 YP_189478.1 CDS SERP1918 NC_002976.3 1938084 1939202 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase complement(1938084..1939202) Staphylococcus epidermidis RP62A 3241877 YP_189479.1 CDS hutG NC_002976.3 1939672 1940607 R catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase complement(1939672..1940607) Staphylococcus epidermidis RP62A 3241878 YP_189480.1 CDS SERP1920 NC_002976.3 1940855 1942003 D identified by match to protein family HMM PF02517; abortive infection family protein 1940855..1942003 Staphylococcus epidermidis RP62A 3241879 YP_189481.1 CDS SERP1921 NC_002976.3 1942195 1942302 D hypothetical protein 1942195..1942302 Staphylococcus epidermidis RP62A 3241888 YP_189482.1 CDS SERP1922 NC_002976.3 1942408 1942587 R hypothetical protein complement(1942408..1942587) Staphylococcus epidermidis RP62A 3241889 YP_189483.1 CDS SERP1923 NC_002976.3 1942565 1942750 D hypothetical protein 1942565..1942750 Staphylococcus epidermidis RP62A 3241890 YP_189484.1 CDS rpiA NC_002976.3 1942989 1943681 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1942989..1943681) Staphylococcus epidermidis RP62A 3241891 YP_189485.1 CDS SERP1925 NC_002976.3 1943847 1944527 D identified by similarity to OMNI:NTL01SA2222; match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 1943847..1944527 Staphylococcus epidermidis RP62A 3241892 YP_189486.1 CDS galM NC_002976.3 1944600 1945610 R identified by similarity to EGAD:7416; match to protein family HMM PF01263; aldose 1-epimerase complement(1944600..1945610) Staphylococcus epidermidis RP62A 3241893 YP_189487.1 CDS SERP1927 NC_002976.3 1946198 1947808 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 1946198..1947808 Staphylococcus epidermidis RP62A 3241894 YP_189488.1 CDS SERP1928 NC_002976.3 1948055 1948156 R hypothetical protein complement(1948055..1948156) Staphylococcus epidermidis RP62A 3241895 YP_189489.1 CDS SERP1929 NC_002976.3 1948267 1948377 D hypothetical protein 1948267..1948377 Staphylococcus epidermidis RP62A 3241896 YP_189490.1 CDS SERP1931 NC_002976.3 1949150 1949767 D identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 1949150..1949767 Staphylococcus epidermidis RP62A 3241905 YP_189491.1 CDS SERP1932 NC_002976.3 1949922 1950725 R hypothetical protein complement(1949922..1950725) Staphylococcus epidermidis RP62A 3241906 YP_189492.1 CDS SERP1933 NC_002976.3 1950722 1951282 R identified by similarity to OMNI:NTL01SA1804; hypothetical protein complement(1950722..1951282) Staphylococcus epidermidis RP62A 3241907 YP_189493.1 CDS SERP1934 NC_002976.3 1951279 1951599 R identified by match to protein family HMM PF03551; PadR family transcriptional regulator complement(1951279..1951599) Staphylococcus epidermidis RP62A 3241908 YP_189494.1 CDS gltS NC_002976.3 1951916 1953124 D identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium:glutamate symporter 1951916..1953124 Staphylococcus epidermidis RP62A 3240437 YP_189495.1 CDS fni-2 NC_002976.3 1953279 1954328 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(1953279..1954328) Staphylococcus epidermidis RP62A 3240438 YP_189496.1 CDS corA NC_002976.3 1954368 1955315 R identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA complement(1954368..1955315) Staphylococcus epidermidis RP62A 3242965 YP_189497.1 CDS SERP1939 NC_002976.3 1955422 1955898 D identified by similarity to OMNI:SA2343; hypothetical protein 1955422..1955898 Staphylococcus epidermidis RP62A 3242289 YP_189498.1 CDS SERP1940 NC_002976.3 1955901 1956290 D identified by similarity to OMNI:NTL01SA2234; hypothetical protein 1955901..1956290 Staphylococcus epidermidis RP62A 3242290 YP_189499.1 CDS SERP1941 NC_002976.3 1956426 1957325 R esterase complement(1956426..1957325) Staphylococcus epidermidis RP62A 3242291 YP_189500.1 CDS SERP1942 NC_002976.3 1957543 1958175 D hypothetical protein 1957543..1958175 Staphylococcus epidermidis RP62A 3241279 YP_189501.1 CDS SERP1943 NC_002976.3 1958158 1958313 R hypothetical protein complement(1958158..1958313) Staphylococcus epidermidis RP62A 3241280 YP_189502.1 CDS SERP1944 NC_002976.3 1958356 1960332 R identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(1958356..1960332) Staphylococcus epidermidis RP62A 3241281 YP_189503.1 CDS SERP1945 NC_002976.3 1960345 1960992 R drug transporter complement(1960345..1960992) Staphylococcus epidermidis RP62A 3241282 YP_189504.1 CDS SERP1946 NC_002976.3 1961133 1961684 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1961133..1961684 Staphylococcus epidermidis RP62A 3241283 YP_189505.1 CDS tcaB NC_002976.3 1961721 1962932 R identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710; tcaB protein complement(1961721..1962932) Staphylococcus epidermidis RP62A 3242454 YP_189506.1 CDS tcaA NC_002976.3 1962990 1964378 R tcaA protein complement(1962990..1964378) Staphylococcus epidermidis RP62A 3242455 YP_189507.1 CDS tcaR NC_002976.3 1964658 1965113 R identified by similarity to OMNI:SA2353; match to protein family HMM PF01047; TcaR family transcriptional regulator complement(1964658..1965113) Staphylococcus epidermidis RP62A 3242456 YP_189508.1 CDS SERP1950 NC_002976.3 1965301 1966257 D identified by match to protein family HMM PF02698; hypothetical protein 1965301..1966257 Staphylococcus epidermidis RP62A 3242457 YP_189509.1 CDS SERP1951 NC_002976.3 1966538 1967206 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1966538..1967206) Staphylococcus epidermidis RP62A 3242458 YP_189510.1 CDS SERP1952 NC_002976.3 1967206 1968258 R identified by match to protein family HMM PF02687; ABC transporter permease complement(1967206..1968258) Staphylococcus epidermidis RP62A 3242571 YP_189511.1 CDS SERP1953 NC_002976.3 1968390 1969064 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1968390..1969064 Staphylococcus epidermidis RP62A 3242572 YP_189512.1 CDS SERP1954 NC_002976.3 1969057 1970412 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1969057..1970412 Staphylococcus epidermidis RP62A 3242573 YP_189513.1 CDS mqo-1 NC_002976.3 1970556 1972034 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(1970556..1972034) Staphylococcus epidermidis RP62A 3242574 YP_189514.1 CDS SERP1956 NC_002976.3 1972366 1973511 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1972366..1973511 Staphylococcus epidermidis RP62A 3242285 YP_189515.1 CDS SERP1957 NC_002976.3 1973716 1975317 R identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(1973716..1975317) Staphylococcus epidermidis RP62A 3242286 YP_189516.1 CDS SERP1958 NC_002976.3 1975667 1977346 D identified by match to protein family HMM PF04464; TagF domain-containing protein 1975667..1977346 Staphylococcus epidermidis RP62A 3241083 YP_189517.1 CDS SERP1959 NC_002976.3 1977478 1978125 R lipoprotein complement(1977478..1978125) Staphylococcus epidermidis RP62A 3241084 YP_189518.1 CDS tagF NC_002976.3 1978254 1980419 R identified by similarity to GP:5924067; match to protein family HMM PF00535; match to protein family HMM PF04464; teichoic acid biosynthesis protein F complement(1978254..1980419) Staphylococcus epidermidis RP62A 3241085 YP_189519.1 CDS SERP1961 NC_002976.3 1980691 1981230 R identified by match to protein family HMM PF00583; acetyltransferase complement(1980691..1981230) Staphylococcus epidermidis RP62A 3241086 YP_189520.1 CDS SERP1962 NC_002976.3 1981471 1982463 D identified by similarity to EGAD:15882; match to protein family HMM PF00107; alcohol dehydrogenase 1981471..1982463 Staphylococcus epidermidis RP62A 3241087 YP_189521.1 CDS SERP1963 NC_002976.3 1982520 1982921 R identified by match to protein family HMM PF00583; acetyltransferase complement(1982520..1982921) Staphylococcus epidermidis RP62A 3241088 YP_189522.1 CDS SERP1964 NC_002976.3 1982990 1983406 R identified by similarity to OMNI:SA2371; hypothetical protein complement(1982990..1983406) Staphylococcus epidermidis RP62A 3242973 YP_189523.1 CDS SERP1967 NC_002976.3 1986078 1987025 D identified by match to protein family HMM PF01544; magnesium/cobalt transporter CorA 1986078..1987025 Staphylococcus epidermidis RP62A 3240676 YP_189524.1 CDS SERP1968 NC_002976.3 1987115 1988560 R identified by similarity to EGAD:18969; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, sucrose-specific IIBC components complement(1987115..1988560) Staphylococcus epidermidis RP62A 3240677 YP_189525.1 CDS SERP1969 NC_002976.3 1988714 1989091 D identified by similarity to GP:14248152; hypothetical protein 1988714..1989091 Staphylococcus epidermidis RP62A 3240678 YP_189526.1 CDS SERP1970 NC_002976.3 1989454 1989549 D hypothetical protein 1989454..1989549 Staphylococcus epidermidis RP62A 3242544 YP_189527.1 CDS SERP1971 NC_002976.3 1989550 1989660 D hypothetical protein 1989550..1989660 Staphylococcus epidermidis RP62A 3242545 YP_189528.1 CDS SERP1972 NC_002976.3 1990253 1992358 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1990253..1992358 Staphylococcus epidermidis RP62A 3242500 YP_189529.1 CDS SERP1973 NC_002976.3 1992431 1992853 D identified by similarity to EGAD:107318; general stress protein 26 1992431..1992853 Staphylococcus epidermidis RP62A 3242501 YP_189530.1 CDS SERP1974 NC_002976.3 1993044 1993394 D identified by similarity to OMNI:SA2381; hypothetical protein 1993044..1993394 Staphylococcus epidermidis RP62A 3242502 YP_189531.1 CDS SERP1975 NC_002976.3 1993479 1993601 R hypothetical protein complement(1993479..1993601) Staphylococcus epidermidis RP62A 3242503 YP_189532.1 CDS gltT NC_002976.3 1993677 1994957 R identified by similarity to EGAD:19948; match to protein family HMM PF00375; proton/sodium-glutamate symport protein complement(1993677..1994957) Staphylococcus epidermidis RP62A 3242504 YP_189533.1 CDS SERP1977 NC_002976.3 1995122 1995487 R hypothetical protein complement(1995122..1995487) Staphylococcus epidermidis RP62A 3242621 YP_189534.1 CDS SERP1978 NC_002976.3 1995611 1996240 R identified by match to protein family HMM PF00881; nitroreductase complement(1995611..1996240) Staphylococcus epidermidis RP62A 3242622 YP_189535.1 CDS sarZ NC_002976.3 1996404 1996850 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1996404..1996850 Staphylococcus epidermidis RP62A 3242623 YP_189536.1 CDS SERP1980 NC_002976.3 1997556 1998719 R identified by similarity to EGAD:30454; match to protein family HMM PF00083; nitrite extrusion protein complement(1997556..1998719) Staphylococcus epidermidis RP62A 3242432 YP_189537.1 CDS SERP1981 NC_002976.3 1998976 1999632 R identified by similarity to EGAD:24916; match to protein family HMM PF00072; match to protein family HMM PF00196; DegU family transcriptional regulator complement(1998976..1999632) Staphylococcus epidermidis RP62A 3242433 YP_189538.1 CDS SERP1982 NC_002976.3 1999661 2000695 R identified by similarity to EGAD:18568; match to protein family HMM PF02518; sensor histidine kinase complement(1999661..2000695) Staphylococcus epidermidis RP62A 3242434 YP_189539.1 CDS SERP1983 NC_002976.3 2000705 2001157 R hypothetical protein complement(2000705..2001157) Staphylococcus epidermidis RP62A 3242435 YP_189540.1 CDS narI NC_002976.3 2001177 2001854 R identified by similarity to EGAD:30704; match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase, gamma subunit complement(2001177..2001854) Staphylococcus epidermidis RP62A 3242436 YP_189541.1 CDS narJ NC_002976.3 2001847 2002437 R identified by similarity to EGAD:30705; match to protein family HMM PF02613; match to protein family HMM TIGR00684; respiratory nitrate reductase, delta subunit complement(2001847..2002437) Staphylococcus epidermidis RP62A 3242250 YP_189542.1 CDS narH NC_002976.3 2002415 2003968 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660; respiratory nitrate reductase, beta subunit complement(2002415..2003968) Staphylococcus epidermidis RP62A 3242251 YP_189543.1 CDS narG NC_002976.3 2003958 2007641 R identified by similarity to EGAD:30702; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; respiratory nitrate reductase, alpha subunit complement(2003958..2007641) Staphylococcus epidermidis RP62A 3241536 YP_189544.1 CDS SERP1988 NC_002976.3 2007820 2008755 R identified by similarity to GP:4433641; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrinogen-III methylase SirB complement(2007820..2008755) Staphylococcus epidermidis RP62A 3241537 YP_189545.1 CDS nirD NC_002976.3 2008746 2009060 R identified by similarity to EGAD:30823; match to protein family HMM PF00355; nitrite reductase [NAD(P)H], small subunit complement(2008746..2009060) Staphylococcus epidermidis RP62A 3241538 YP_189546.1 CDS nirB NC_002976.3 2009063 2011468 R identified by similarity to EGAD:30822; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; nitrite reductase [NAD(P)H], large subunit complement(2009063..2011468) Staphylococcus epidermidis RP62A 3241539 YP_189547.1 CDS SERP1991 NC_002976.3 2011744 2011848 R hypothetical protein complement(2011744..2011848) Staphylococcus epidermidis RP62A 3241540 YP_189548.1 CDS nirR NC_002976.3 2011906 2012625 R identified by similarity to GP:4433637; NirR family transcriptional regulator complement(2011906..2012625) Staphylococcus epidermidis RP62A 3241541 YP_189549.1 CDS SERP1993 NC_002976.3 2012615 2012731 R hypothetical protein complement(2012615..2012731) Staphylococcus epidermidis RP62A 3242579 YP_189550.1 CDS SERP1994 NC_002976.3 2012875 2014350 D identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein 2012875..2014350 Staphylococcus epidermidis RP62A 3240570 YP_189551.1 CDS SERP1995 NC_002976.3 2014631 2014786 D identified by similarity to GP:8918792; truncated IS1272 transposase 2014631..2014786 Staphylococcus epidermidis RP62A 3242372 YP_189552.1 CDS SERP1996 NC_002976.3 2015086 2015622 R identified by match to protein family HMM PF00583; acetyltransferase complement(2015086..2015622) Staphylococcus epidermidis RP62A 3242371 YP_189553.1 CDS SERP1997 NC_002976.3 2016065 2016886 R identified by match to protein family HMM PF01226; formate/nitrite transporter family protein complement(2016065..2016886) Staphylococcus epidermidis RP62A 3242416 YP_189554.1 CDS SERP1998 NC_002976.3 2017121 2017591 R identified by similarity to OMNI:SA2402; match to protein family HMM PF05146; hypothetical protein complement(2017121..2017591) Staphylococcus epidermidis RP62A 3242417 YP_189555.1 CDS SERP1999 NC_002976.3 2017873 2018469 R glutaredoxin complement(2017873..2018469) Staphylococcus epidermidis RP62A 3242961 YP_189556.1 CDS SERP2000 NC_002976.3 2018493 2018855 R lipoprotein complement(2018493..2018855) Staphylococcus epidermidis RP62A 3242962 YP_189557.1 CDS fmhA NC_002976.3 2019216 2020463 D identified by match to protein family HMM PF02388; fmhA protein 2019216..2020463 Staphylococcus epidermidis RP62A 3242963 YP_189558.1 CDS SERP2002 NC_002976.3 2020849 2020995 D identified by similarity to GP:8918792; truncated IS1272 transposase 2020849..2020995 Staphylococcus epidermidis RP62A 3242964 YP_189559.1 CDS SERP2003 NC_002976.3 2021139 2021870 R identified by similarity to EGAD:33113; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(2021139..2021870) Staphylococcus epidermidis RP62A 3242966 YP_189560.1 CDS SERP2004 NC_002976.3 2021867 2022586 R identified by similarity to EGAD:28090; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(2021867..2022586) Staphylococcus epidermidis RP62A 3240560 YP_189561.1 CDS SERP2005 NC_002976.3 2022567 2023355 R identified by similarity to SP:P42199; match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein complement(2022567..2023355) Staphylococcus epidermidis RP62A 3240561 YP_189562.1 CDS SERP2006 NC_002976.3 2023570 2023674 D identified by similarity to OMNI:SA2414; hypothetical protein 2023570..2023674 Staphylococcus epidermidis RP62A 3240562 YP_189563.1 CDS gpmA NC_002976.3 2023860 2024546 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2023860..2024546) Staphylococcus epidermidis RP62A 3240563 YP_189564.1 CDS SERP2008 NC_002976.3 2024788 2025669 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(2024788..2025669) Staphylococcus epidermidis RP62A 3240564 YP_189565.1 CDS SERP2009 NC_002976.3 2025960 2026346 R identified by match to protein family HMM PF04138; hypothetical protein complement(2025960..2026346) Staphylococcus epidermidis RP62A 3242287 YP_189566.1 CDS SERP2010 NC_002976.3 2026367 2027839 R identified by similarity to OMNI:SA1738; hypothetical protein complement(2026367..2027839) Staphylococcus epidermidis RP62A 3242288 YP_189567.1 CDS SERP2011 NC_002976.3 2028090 2029262 R identified by similarity to EGAD:22488; match to protein family HMM PF00872; IS256-like transposase complement(2028090..2029262) Staphylococcus epidermidis RP62A 3241284 YP_189568.1 CDS garK NC_002976.3 2029466 2030617 D identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2 2029466..2030617 Staphylococcus epidermidis RP62A 3241285 YP_189569.1 CDS SERP2013 NC_002976.3 2030648 2031349 D hypothetical protein 2030648..2031349 Staphylococcus epidermidis RP62A 3240541 YP_189570.1 CDS bcr NC_002976.3 2031613 2032812 D identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710; bicyclomycin resistance protein 2031613..2032812 Staphylococcus epidermidis RP62A 3240542 YP_189571.1 CDS SERP2015 NC_002976.3 2033203 2033727 D identified by similarity to OMNI:NTL01SA2319; hypothetical protein 2033203..2033727 Staphylococcus epidermidis RP62A 3240543 YP_189572.1 CDS SERP2016 NC_002976.3 2033790 2034599 R identified by similarity to OMNI:SA2440; match to protein family HMM PF00149; match to protein family HMM PF02549; hypothetical protein complement(2033790..2034599) Staphylococcus epidermidis RP62A 3240544 YP_189573.1 CDS SERP2017 NC_002976.3 2034917 2036293 D identified by match to protein family HMM PF00324; amino acid permease 2034917..2036293 Staphylococcus epidermidis RP62A 3240545 YP_189574.1 CDS SERP2018 NC_002976.3 2036441 2038270 R identified by match to protein family HMM PF00324; hypothetical protein complement(2036441..2038270) Staphylococcus epidermidis RP62A 3240546 YP_189575.1 CDS SERP2019 NC_002976.3 2038557 2040074 D identified by similarity to GP:9246437; match to protein family HMM PF00144; fmtA-like protein 2038557..2040074 Staphylococcus epidermidis RP62A 3240547 YP_189576.1 CDS SERP2020 NC_002976.3 2040104 2040196 R hypothetical protein complement(2040104..2040196) Staphylococcus epidermidis RP62A 3242575 YP_189577.1 CDS SERP2021 NC_002976.3 2040235 2041071 D identified by match to protein family HMM PF02096; hypothetical protein 2040235..2041071 Staphylococcus epidermidis RP62A 3242576 YP_189578.1 CDS SERP2022 NC_002976.3 2041194 2042126 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2041194..2042126) Staphylococcus epidermidis RP62A 3242577 YP_189579.1 CDS SERP2023 NC_002976.3 2042550 2043950 R identified by match to protein family HMM PF00083; transporter complement(2042550..2043950) Staphylococcus epidermidis RP62A 3242578 YP_189580.1 CDS lytS NC_002976.3 2044375 2046150 D identified by similarity to EGAD:42940; match to protein family HMM PF02518; sensor histidine kinase LytS 2044375..2046150 Staphylococcus epidermidis RP62A 3242280 YP_189581.1 CDS lytR NC_002976.3 2046131 2046889 D identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397; two-component response regulator 2046131..2046889 Staphylococcus epidermidis RP62A 3242281 YP_189582.1 CDS lrgA NC_002976.3 2047024 2047482 D negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 2047024..2047482 Staphylococcus epidermidis RP62A 3242282 YP_189583.1 CDS lrgB NC_002976.3 2047486 2048187 D in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 2047486..2048187 Staphylococcus epidermidis RP62A 3242283 YP_189584.1 CDS SERP2028 NC_002976.3 2048369 2049064 R identified by similarity to EGAD:109206; match to protein family HMM PF00528; amino acid ABC transporter permease complement(2048369..2049064) Staphylococcus epidermidis RP62A 3242284 YP_189585.1 CDS SERP2029 NC_002976.3 2049064 2050008 R identified by similarity to EGAD:109190; match to protein family HMM PF04069; amino acid ABC transporter amino acid-binding protein complement(2049064..2050008) Staphylococcus epidermidis RP62A 3241089 YP_189586.1 CDS SERP2030 NC_002976.3 2050025 2050660 R identified by similarity to EGAD:109210; match to protein family HMM PF00528; amino acid ABC transporter permease complement(2050025..2050660) Staphylococcus epidermidis RP62A 3241090 YP_189587.1 CDS SERP2031 NC_002976.3 2050663 2051919 R identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; amino acid ABC transporter ATP-binding protein complement(2050663..2051919) Staphylococcus epidermidis RP62A 3242967 YP_189588.1 CDS SERP2032 NC_002976.3 2052409 2053461 D identified by match to protein family HMM PF00107; sorbitol dehydrogenase 2052409..2053461 Staphylococcus epidermidis RP62A 3242968 YP_189589.1 CDS SERP2033 NC_002976.3 2053597 2053806 R hypothetical protein complement(2053597..2053806) Staphylococcus epidermidis RP62A 3242969 YP_189590.1 CDS SERP2034 NC_002976.3 2054061 2055740 D identified by match to protein family HMM PF00324; amino acid permease 2054061..2055740 Staphylococcus epidermidis RP62A 3242970 YP_189591.1 CDS SERP2035 NC_002976.3 2056056 2057411 D identified by match to protein family HMM PF00135; carboxylesterase 2056056..2057411 Staphylococcus epidermidis RP62A 3242971 YP_189592.1 CDS SERP2036 NC_002976.3 2057494 2058672 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(2057494..2058672) Staphylococcus epidermidis RP62A 3242972 YP_189593.1 CDS SERP2037 NC_002976.3 2058811 2059587 R identified by similarity to EGAD:91417; match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein complement(2058811..2059587) Staphylococcus epidermidis RP62A 3242546 YP_189594.1 CDS SERP2038 NC_002976.3 2059580 2060242 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2059580..2060242) Staphylococcus epidermidis RP62A 3242547 YP_189595.1 CDS SERP2039 NC_002976.3 2060538 2060720 R identified by similarity to OMNI:SA2306; hypothetical protein complement(2060538..2060720) Staphylococcus epidermidis RP62A 3242548 YP_189596.1 CDS SERP2040 NC_002976.3 2060849 2061631 R identified by match to protein family HMM PF02517; abortive infection family protein complement(2060849..2061631) Staphylococcus epidermidis RP62A 3242549 YP_189597.1 CDS SERP2041 NC_002976.3 2061776 2063353 D identified by match to protein family HMM PF01645; glutamate synthase-related protein 2061776..2063353 Staphylococcus epidermidis RP62A 3242550 YP_189598.1 CDS SERP2042 NC_002976.3 2063406 2063873 R lipoprotein complement(2063406..2063873) Staphylococcus epidermidis RP62A 3242551 YP_189599.1 CDS SERP2043 NC_002976.3 2064057 2065133 D identified by match to protein family HMM PF05343; M42 family peptidase 2064057..2065133 Staphylococcus epidermidis RP62A 3242498 YP_189600.1 CDS SERP2044 NC_002976.3 2065150 2065338 D hypothetical protein 2065150..2065338 Staphylococcus epidermidis RP62A 3242499 YP_189601.1 CDS SERP2045 NC_002976.3 2065501 2066319 R identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase complement(2065501..2066319) Staphylococcus epidermidis RP62A 3242624 YP_189602.1 CDS SERP2046 NC_002976.3 2066632 2068164 D identified by match to protein family HMM PF02541; exopolyphosphatase 2066632..2068164 Staphylococcus epidermidis RP62A 3242625 YP_189603.1 CDS ppk NC_002976.3 2068227 2070392 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2068227..2070392 Staphylococcus epidermidis RP62A 3242626 YP_189604.1 CDS SERP2048 NC_002976.3 2070559 2071815 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(2070559..2071815) Staphylococcus epidermidis RP62A 3242627 YP_189605.1 CDS SERP2049 NC_002976.3 2071904 2072596 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(2071904..2072596) Staphylococcus epidermidis RP62A 3242628 YP_189606.1 CDS SERP2050 NC_002976.3 2072959 2073105 D identified by similarity to OMNI:SA2489; hypothetical protein 2072959..2073105 Staphylococcus epidermidis RP62A 3242429 YP_189607.1 CDS SERP2051 NC_002976.3 2073388 2073579 R identified by similarity to OMNI:SA2491; hypothetical protein complement(2073388..2073579) Staphylococcus epidermidis RP62A 3242430 YP_189608.1 CDS SERP2052 NC_002976.3 2073731 2076589 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; helicase complement(2073731..2076589) Staphylococcus epidermidis RP62A 3242431 YP_189609.1 CDS SERP2053 NC_002976.3 2076591 2076989 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2076591..2076989) Staphylococcus epidermidis RP62A 3242252 YP_189610.1 CDS SERP2054 NC_002976.3 2077256 2078746 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(2077256..2078746) Staphylococcus epidermidis RP62A 3242253 YP_189611.1 CDS SERP2055 NC_002976.3 2078964 2080604 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2078964..2080604 Staphylococcus epidermidis RP62A 3242254 YP_189612.1 CDS galU NC_002976.3 2080818 2081684 R identified by similarity to EGAD:16704; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(2080818..2081684) Staphylococcus epidermidis RP62A 3242255 YP_189613.1 CDS gntP NC_002976.3 2081933 2083291 R identified by similarity to EGAD:19179; match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate transporter, permease protein complement(2081933..2083291) Staphylococcus epidermidis RP62A 3242256 YP_189614.1 CDS gntK NC_002976.3 2083341 2084882 R identified by similarity to EGAD:30308; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314; gluconokinase complement(2083341..2084882) Staphylococcus epidermidis RP62A 3242257 YP_189615.1 CDS gntR NC_002976.3 2084906 2085586 R identified by similarity to EGAD:17516; match to protein family HMM PF00392; gluconate operon transcriptional repressor complement(2084906..2085586) Staphylococcus epidermidis RP62A 3241535 YP_189616.1 CDS glpT NC_002976.3 2085955 2087313 D identified by similarity to EGAD:8163; match to protein family HMM PF00083; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 2085955..2087313 Staphylococcus epidermidis RP62A 3242580 YP_189617.1 CDS SERP2061 NC_002976.3 2087471 2088187 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2087471..2088187) Staphylococcus epidermidis RP62A 3242581 YP_189618.1 CDS SERP2062 NC_002976.3 2088206 2088304 R hypothetical protein complement(2088206..2088304) Staphylococcus epidermidis RP62A 3242582 YP_189619.1 CDS SERP2063 NC_002976.3 2088273 2089148 R identified by similarity to SP:P22862; esterase complement(2088273..2089148) Staphylococcus epidermidis RP62A 3242583 YP_189620.1 CDS SERP2064 NC_002976.3 2089454 2090371 D identified by match to protein family HMM PF01569; PAP2 family protein 2089454..2090371 Staphylococcus epidermidis RP62A 3242584 YP_189621.1 CDS SERP2065 NC_002976.3 2090491 2091192 R identified by similarity to OMNI:SA2518; match to protein family HMM PF04607; hypothetical protein complement(2090491..2091192) Staphylococcus epidermidis RP62A 3242585 YP_189622.1 CDS SERP2066 NC_002976.3 2091456 2091869 R identified by similarity to EGAD:108077; hypothetical protein complement(2091456..2091869) Staphylococcus epidermidis RP62A 3242586 YP_189623.1 CDS SERP2067 NC_002976.3 2091947 2093863 R hypothetical protein complement(2091947..2093863) Staphylococcus epidermidis RP62A 3240568 YP_189624.1 CDS SERP2068 NC_002976.3 2094025 2094315 R identified by similarity to OMNI:NTL01HSA00233; match to protein family HMM PF02619; match to protein family HMM PF03992; hypothetical protein complement(2094025..2094315) Staphylococcus epidermidis RP62A 3240569 YP_189625.1 CDS SERP2069 NC_002976.3 2094468 2095742 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(2094468..2095742) Staphylococcus epidermidis RP62A 3242376 YP_189626.1 CDS SERP2070 NC_002976.3 2096555 2097013 D identified by similarity to EGAD:22506; thiamine-phosphate pyrophosphorylase 2096555..2097013 Staphylococcus epidermidis RP62A 3240573 YP_189627.1 CDS SERP2071 NC_002976.3 2097006 2098124 D identified by match to protein family HMM PF01266; glycine oxidase 2097006..2098124 Staphylococcus epidermidis RP62A 3240574 YP_189628.1 CDS thiS NC_002976.3 2098108 2098308 D identified by similarity to EGAD:143246; match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2098108..2098308 Staphylococcus epidermidis RP62A 3240575 YP_189629.1 CDS thiG NC_002976.3 2098310 2099077 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2098310..2099077 Staphylococcus epidermidis RP62A 3240576 YP_189630.1 CDS SERP2074 NC_002976.3 2099079 2100077 D identified by match to protein family HMM PF00899; match to protein family HMM PF05237; HesA/MoeB/ThiF family protein 2099079..2100077 Staphylococcus epidermidis RP62A 3240577 YP_189631.1 CDS SERP2075 NC_002976.3 2100185 2100799 D identified by match to protein family HMM PF00597; DedA family protein 2100185..2100799 Staphylococcus epidermidis RP62A 3240578 YP_189632.1 CDS SERP2076 NC_002976.3 2100973 2102937 D identified by similarity to EGAD:37656; fructose-1,6-bisphosphatase 2100973..2102937 Staphylococcus epidermidis RP62A 3241748 YP_189633.1 CDS SERP2077 NC_002976.3 2103160 2104947 R identified by match to protein family HMM PF00999; Na+/H+ antiporter complement(2103160..2104947) Staphylococcus epidermidis RP62A 3241787 YP_189634.1 CDS SERP2078 NC_002976.3 2105085 2105213 D hypothetical protein 2105085..2105213 Staphylococcus epidermidis RP62A 3240904 YP_189635.1 CDS SERP2079 NC_002976.3 2105295 2106344 D identified by similarity to OMNI:SA2528; hypothetical protein 2105295..2106344 Staphylococcus epidermidis RP62A 3240905 YP_189636.1 CDS SERP2080 NC_002976.3 2106578 2108017 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2106578..2108017 Staphylococcus epidermidis RP62A 3240906 YP_189637.1 CDS SERP2081 NC_002976.3 2108088 2109035 R identified by match to protein family HMM PF01297; adhesion lipoprotein complement(2108088..2109035) Staphylococcus epidermidis RP62A 3240907 YP_189638.1 CDS SERP2082 NC_002976.3 2109202 2109483 D identified by match to protein family HMM PF00583; acetyltransferase 2109202..2109483 Staphylococcus epidermidis RP62A 3242373 YP_189639.1 CDS SERP2083 NC_002976.3 2109745 2110542 D identified by match to protein family HMM PF00903; glyoxalase 2109745..2110542 Staphylococcus epidermidis RP62A 3242374 YP_189640.1 CDS aldA-2 NC_002976.3 2111487 2112980 R identified by similarity to EGAD:15875; match to protein family HMM PF00171; aldehyde dehydrogenase complement(2111487..2112980) Staphylococcus epidermidis RP62A 3242375 YP_189641.1 CDS SERP2085 NC_002976.3 2112980 2113111 R hypothetical protein complement(2112980..2113111) Staphylococcus epidermidis RP62A 3241749 YP_189642.1 CDS frp NC_002976.3 2113358 2114020 R identified by match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase complement(2113358..2114020) Staphylococcus epidermidis RP62A 3241780 YP_189643.1 CDS SERP2087 NC_002976.3 2114267 2115259 D catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2114267..2115259 Staphylococcus epidermidis RP62A 3241781 YP_189644.1 CDS SERP2088 NC_002976.3 2115446 2116255 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01483; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(2115446..2116255) Staphylococcus epidermidis RP62A 3241782 YP_189645.1 CDS srtA NC_002976.3 2116600 2117211 R identified by similarity to GP:5726436; match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(2116600..2117211) Staphylococcus epidermidis RP62A 3241783 YP_189646.1 CDS SERP2090 NC_002976.3 2117387 2117881 D identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 2117387..2117881 Staphylococcus epidermidis RP62A 3241784 YP_189647.1 CDS SERP2091 NC_002976.3 2117944 2118120 R hypothetical protein complement(2117944..2118120) Staphylococcus epidermidis RP62A 3241785 YP_189648.1 CDS SERP2092 NC_002976.3 2118445 2118600 D identified by similarity to GP:8918792; truncated IS1272 transposase 2118445..2118600 Staphylococcus epidermidis RP62A 3241786 YP_189649.1 CDS SERP2093 NC_002976.3 2118693 2118794 R hypothetical protein complement(2118693..2118794) Staphylococcus epidermidis RP62A 3240911 YP_189650.1 CDS sdhA NC_002976.3 2118833 2119732 R identified by similarity to EGAD:154938; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent, alpha subunit complement(2118833..2119732) Staphylococcus epidermidis RP62A 3242446 YP_189651.1 CDS sdhB NC_002976.3 2119745 2120428 R identified by similarity to SP:P33074; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent, beta subunit complement(2119745..2120428) Staphylococcus epidermidis RP62A 3242447 YP_189652.1 CDS SERP2096 NC_002976.3 2120428 2121471 R identified by similarity to EGAD:33437; perfringolysin O regulator protein complement(2120428..2121471) Staphylococcus epidermidis RP62A 3242448 YP_189653.1 CDS SERP2097 NC_002976.3 2121760 2121873 D hypothetical protein 2121760..2121873 Staphylococcus epidermidis RP62A 3242449 YP_189654.1 CDS SERP2098 NC_002976.3 2122124 2122909 R hypothetical protein complement(2122124..2122909) Staphylococcus epidermidis RP62A 3242450 YP_189655.1 CDS xylB NC_002976.3 2123184 2124674 R identified by similarity to EGAD:108807; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; D-xylulose kinase complement(2123184..2124674) Staphylococcus epidermidis RP62A 3242451 YP_189656.1 CDS rbsK NC_002976.3 2124965 2125888 R identified by similarity to EGAD:19594; match to protein family HMM PF00294; ribokinase complement(2124965..2125888) Staphylococcus epidermidis RP62A 3242369 YP_189657.1 CDS SERP2101 NC_002976.3 2125942 2126346 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(2125942..2126346) Staphylococcus epidermidis RP62A 3242370 YP_189658.1 CDS SERP2102 NC_002976.3 2126368 2127249 R hypothetical protein complement(2126368..2127249) Staphylococcus epidermidis RP62A 3241121 YP_189659.1 CDS dep NC_002976.3 2127505 2129109 R identified by similarity to EGAD:45768; match to protein family HMM PF01019; gamma-glutamyltranspeptidase complement(2127505..2129109) Staphylococcus epidermidis RP62A 3241122 YP_189660.1 CDS SERP2104 NC_002976.3 2129112 2129288 R hypothetical protein complement(2129112..2129288) Staphylococcus epidermidis RP62A 3241123 YP_189661.1 CDS capA NC_002976.3 2129263 2130336 R identified by similarity to EGAD:20151; capA protein complement(2129263..2130336) Staphylococcus epidermidis RP62A 3241124 YP_189662.1 CDS capC NC_002976.3 2130360 2130812 R identified by similarity to EGAD:14793; capC protein complement(2130360..2130812) Staphylococcus epidermidis RP62A 3241125 YP_189663.1 CDS capB NC_002976.3 2130814 2131971 R capB protein complement(2130814..2131971) Staphylococcus epidermidis RP62A 3241126 YP_189664.1 CDS SERP2108 NC_002976.3 2132420 2132737 D hypothetical protein 2132420..2132737 Staphylococcus epidermidis RP62A 3241127 YP_189665.1 CDS SERP2109 NC_002976.3 2132809 2133789 R identified by similarity to OMNI:SA2549; esterase complement(2132809..2133789) Staphylococcus epidermidis RP62A 3240756 YP_189666.1 CDS SERP2110 NC_002976.3 2133872 2134720 R identified by similarity to EGAD:108622; match to protein family HMM PF02588; hypothetical protein complement(2133872..2134720) Staphylococcus epidermidis RP62A 3242479 YP_189667.1 CDS SERP2111 NC_002976.3 2134903 2135229 R thioredoxin complement(2134903..2135229) Staphylococcus epidermidis RP62A 3242480 YP_189668.1 CDS SERP2112 NC_002976.3 2135452 2136504 D identified by similarity to EGAD:21839; match to protein family HMM PF00107; alcohol dehydrogenase 2135452..2136504 Staphylococcus epidermidis RP62A 3242481 YP_189669.1 CDS SERP2113 NC_002976.3 2136569 2137336 R identified by match to protein family HMM PF02517; abortive infection family protein complement(2136569..2137336) Staphylococcus epidermidis RP62A 3242482 YP_189670.1 CDS SERP2114 NC_002976.3 2137627 2139654 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; PTS system, IIABC components complement(2137627..2139654) Staphylococcus epidermidis RP62A 3242483 YP_189671.1 CDS SERP2115 NC_002976.3 2139898 2141637 R catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase complement(2139898..2141637) Staphylococcus epidermidis RP62A 3242484 YP_189672.1 CDS SERP2116 NC_002976.3 2141687 2142376 R identified by similarity to OMNI:NTL01SA2425; match to protein family HMM PF04172; hypothetical protein complement(2141687..2142376) Staphylococcus epidermidis RP62A 3242485 YP_189673.1 CDS SERP2117 NC_002976.3 2142373 2142765 R identified by similarity to OMNI:SA2554; match to protein family HMM PF03788; LrgA family protein complement(2142373..2142765) Staphylococcus epidermidis RP62A 3242486 YP_189674.1 CDS SERP2118 NC_002976.3 2143077 2143961 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2143077..2143961) Staphylococcus epidermidis RP62A 3242437 YP_189675.1 CDS SERP2119 NC_002976.3 2144149 2144364 D identified by similarity to OMNI:NTL01SA2428; hypothetical protein 2144149..2144364 Staphylococcus epidermidis RP62A 3242438 YP_189676.1 CDS SERP2120 NC_002976.3 2144622 2145053 D identified by match to protein family HMM PF05257; secretory antigen precursor SsaA-related protein 2144622..2145053 Staphylococcus epidermidis RP62A 3242439 YP_189677.1 CDS SERP2121 NC_002976.3 2145130 2146407 R identified by similarity to EGAD:9852; match to protein family HMM PF00368; match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative complement(2145130..2146407) Staphylococcus epidermidis RP62A 3242440 YP_189678.1 CDS SERP2122 NC_002976.3 2146652 2147818 D identified by match to protein family HMM PF01154; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 2146652..2147818 Staphylococcus epidermidis RP62A 3242441 YP_189679.1 CDS ogt NC_002976.3 2148070 2148588 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase complement(2148070..2148588) Staphylococcus epidermidis RP62A 3242442 YP_189680.1 CDS SERP2124 NC_002976.3 2148893 2149357 R hypothetical protein complement(2148893..2149357) Staphylococcus epidermidis RP62A 3242443 YP_189681.1 CDS SERP2125 NC_002976.3 2149540 2149722 R identified by similarity to GP:14248323; hypothetical protein complement(2149540..2149722) Staphylococcus epidermidis RP62A 3241556 YP_189682.1 CDS feoB NC_002976.3 2149737 2151731 R identified by match to protein family HMM PF02421; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(2149737..2151731) Staphylococcus epidermidis RP62A 3241557 YP_189683.1 CDS SERP2127 NC_002976.3 2151737 2151964 R identified by match to protein family HMM PF04023; FeoA family protein complement(2151737..2151964) Staphylococcus epidermidis RP62A 3241558 YP_189684.1 CDS SERP2128 NC_002976.3 2152253 2153797 R catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase complement(2152253..2153797) Staphylococcus epidermidis RP62A 3241657 YP_189685.1 CDS SERP2129 NC_002976.3 2154300 2155169 R identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase complement(2154300..2155169) Staphylococcus epidermidis RP62A 3241658 YP_189686.1 CDS SERP2130 NC_002976.3 2155285 2155578 D hypothetical protein 2155285..2155578 Staphylococcus epidermidis RP62A 3241659 YP_189687.1 CDS SERP2131 NC_002976.3 2155815 2158199 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; cation transporter E1-E2 family ATPase 2155815..2158199 Staphylococcus epidermidis RP62A 3241660 YP_189688.1 CDS SERP2132 NC_002976.3 2158331 2158537 D identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003; heavy metal-binding protein 2158331..2158537 Staphylococcus epidermidis RP62A 3241496 YP_189689.1 CDS SERP2133 NC_002976.3 2158591 2159589 R catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase complement(2158591..2159589) Staphylococcus epidermidis RP62A 3241497 YP_189690.1 CDS SERP2134 NC_002976.3 2159602 2160762 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(2159602..2160762) Staphylococcus epidermidis RP62A 3241498 YP_189691.1 CDS SERP2135 NC_002976.3 2160907 2161047 D hypothetical protein 2160907..2161047 Staphylococcus epidermidis RP62A 3241499 YP_189692.1 CDS SERP2136 NC_002976.3 2161089 2161862 R identified by similarity to GP:8886398; match to protein family HMM PF05257; secretory antigen precursor SsaA complement(2161089..2161862) Staphylococcus epidermidis RP62A 3241500 YP_189693.1 CDS SERP2137 NC_002976.3 2162461 2164269 R identified by match to protein family HMM PF01757; hypothetical protein complement(2162461..2164269) Staphylococcus epidermidis RP62A 3241501 YP_189694.1 CDS SERP2138 NC_002976.3 2164774 2165481 R hypothetical protein complement(2164774..2165481) Staphylococcus epidermidis RP62A 3241502 YP_189695.1 CDS SERP2139 NC_002976.3 2166003 2166107 R hypothetical protein complement(2166003..2166107) Staphylococcus epidermidis RP62A 3241542 YP_189696.1 CDS SERP2140 NC_002976.3 2166137 2167561 R identified by match to protein family HMM PF03976; hypothetical protein complement(2166137..2167561) Staphylococcus epidermidis RP62A 3243004 YP_189697.1 CDS SERP2141 NC_002976.3 2167662 2168720 R regulatory protein complement(2167662..2168720) Staphylococcus epidermidis RP62A 3243005 YP_189698.1 CDS SERP2142 NC_002976.3 2169022 2170401 R identified by match to protein family HMM PF00324; amino acid permease complement(2169022..2170401) Staphylococcus epidermidis RP62A 3243006 YP_189699.1 CDS SERP2143 NC_002976.3 2170608 2171465 R identified by similarity to OMNI:NTL01SA2473; match to protein family HMM PF03881; fructosamine kinase complement(2170608..2171465) Staphylococcus epidermidis RP62A 3243007 YP_189700.1 CDS pyrD NC_002976.3 2171689 2172753 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2171689..2172753 Staphylococcus epidermidis RP62A 3243008 YP_189701.1 CDS SERP2145 NC_002976.3 2172847 2173116 D hypothetical protein 2172847..2173116 Staphylococcus epidermidis RP62A 3243009 YP_189702.1 CDS SERP2146 NC_002976.3 2173247 2173402 R identified by similarity to GP:8918792; truncated IS1272 transposase complement(2173247..2173402) Staphylococcus epidermidis RP62A 3243010 YP_189703.1 CDS SERP2147 NC_002976.3 2173685 2174401 R identified by match to protein family HMM PF02677; hypothetical protein complement(2173685..2174401) Staphylococcus epidermidis RP62A 3243011 YP_189704.1 CDS SERP2148 NC_002976.3 2174678 2176009 R identified by similarity to OMNI:NTL01SA2241; hypothetical protein complement(2174678..2176009) Staphylococcus epidermidis RP62A 3242959 YP_189705.1 CDS SERP2149 NC_002976.3 2176013 2177023 R hypothetical protein complement(2176013..2177023) Staphylococcus epidermidis RP62A 3242960 YP_189706.1 CDS panD NC_002976.3 2177447 2177833 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2177447..2177833) Staphylococcus epidermidis RP62A 3242223 YP_189707.1 CDS panC NC_002976.3 2177826 2178686 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2177826..2178686) Staphylococcus epidermidis RP62A 3242224 YP_189708.1 CDS panB NC_002976.3 2178679 2179497 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2178679..2179497) Staphylococcus epidermidis RP62A 3242225 YP_189709.1 CDS SERP2153 NC_002976.3 2179573 2180442 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2179573..2180442 Staphylococcus epidermidis RP62A 3242226 YP_189710.1 CDS budA NC_002976.3 2180841 2181545 R identified by similarity to EGAD:17067; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(2180841..2181545) Staphylococcus epidermidis RP62A 3242227 YP_189711.1 CDS budB NC_002976.3 2181657 2183321 R catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(2181657..2183321) Staphylococcus epidermidis RP62A 3242511 YP_189712.1 CDS ldh NC_002976.3 2183384 2184334 R identified by similarity to SP:P13714; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(2183384..2184334) Staphylococcus epidermidis RP62A 3242512 YP_189713.1 CDS SERP2157 NC_002976.3 2185156 2186037 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2185156..2186037) Staphylococcus epidermidis RP62A 3242535 YP_189714.1 CDS SERP2158 NC_002976.3 2186581 2188032 D identified by match to protein family HMM PF00324; amino acid permease 2186581..2188032 Staphylococcus epidermidis RP62A 3242536 YP_189715.1 CDS SERP2159 NC_002976.3 2188159 2189496 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(2188159..2189496) Staphylococcus epidermidis RP62A 3242537 YP_189716.1 CDS SERP2160 NC_002976.3 2189763 2190194 D hypothetical protein 2189763..2190194 Staphylococcus epidermidis RP62A 3242538 YP_189717.1 CDS SERP2161 NC_002976.3 2190298 2191176 R lipoprotein complement(2190298..2191176) Staphylococcus epidermidis RP62A 3242539 YP_189718.1 CDS SERP2162 NC_002976.3 2191498 2192088 D cell wall surface anchor family protein 2191498..2192088 Staphylococcus epidermidis RP62A 3242540 YP_189719.1 CDS SERP2163 NC_002976.3 2192083 2192271 R truncated IS1272 transposase complement(2192083..2192271) Staphylococcus epidermidis RP62A 3242327 YP_189720.1 CDS SERP2164 NC_002976.3 2192579 2192725 R hypothetical protein complement(2192579..2192725) Staphylococcus epidermidis RP62A 3242328 YP_189721.1 CDS SERP2165 NC_002976.3 2192892 2194253 D identified by similarity to EGAD:7958; match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase 2192892..2194253 Staphylococcus epidermidis RP62A 3242329 YP_189722.1 CDS fdaB NC_002976.3 2194558 2195448 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2194558..2195448 Staphylococcus epidermidis RP62A 3240908 YP_189723.1 CDS SERP2167 NC_002976.3 2195581 2196504 R lipoprotein complement(2195581..2196504) Staphylococcus epidermidis RP62A 3240909 YP_189724.1 CDS mqo-2 NC_002976.3 2196899 2198398 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2196899..2198398) Staphylococcus epidermidis RP62A 3240910 YP_189725.1 CDS SERP2169 NC_002976.3 2198607 2199425 R identified by similarity to OMNI:NTL01BH1376; match to protein family HMM PF03618; hypothetical protein complement(2198607..2199425) Staphylococcus epidermidis RP62A 3242452 YP_189726.1 CDS ppdK NC_002976.3 2199427 2202054 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2199427..2202054) Staphylococcus epidermidis RP62A 3242453 YP_189727.1 CDS SERP2171 NC_002976.3 2202180 2202272 R hypothetical protein complement(2202180..2202272) Staphylococcus epidermidis RP62A 3242363 YP_189728.1 CDS SERP2172 NC_002976.3 2202403 2203998 R identified by similarity to EGAD:18603; match to protein family HMM PF00501; acetyl-CoA synthetase complement(2202403..2203998) Staphylococcus epidermidis RP62A 3242364 YP_189729.1 CDS SERP2173 NC_002976.3 2204338 2204784 R identified by similarity to OMNI:NTL01SA2502; match to protein family HMM PF03992; hypothetical protein complement(2204338..2204784) Staphylococcus epidermidis RP62A 3242365 YP_189730.1 CDS SERP2174 NC_002976.3 2204812 2205030 R identified by similarity to OMNI:SA2626; hypothetical protein complement(2204812..2205030) Staphylococcus epidermidis RP62A 3242366 YP_189731.1 CDS SERP2175 NC_002976.3 2205477 2206652 R identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; amidohydrolase complement(2205477..2206652) Staphylococcus epidermidis RP62A 3242367 YP_189732.1 CDS betA NC_002976.3 2206974 2208692 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2206974..2208692) Staphylococcus epidermidis RP62A 3242368 YP_189733.1 CDS betB NC_002976.3 2208852 2210342 R identified by similarity to EGAD:97843; match to protein family HMM PF00171; match to protein family HMM TIGR01804; betaine aldehyde dehydrogenase complement(2208852..2210342) Staphylococcus epidermidis RP62A 3240757 YP_189734.1 CDS SERP2178 NC_002976.3 2210814 2211377 D identified by similarity to OMNI:NTL01SA2506; hypothetical protein 2210814..2211377 Staphylococcus epidermidis RP62A 3240758 YP_189735.2 CDS SERP2179 NC_002976.3 2211424 2213046 R identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter complement(2211424..2213046) Staphylococcus epidermidis RP62A 3240759 YP_189736.1 CDS SERP2180 NC_002976.3 2213467 2214765 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(2213467..2214765) Staphylococcus epidermidis RP62A 3240760 YP_189737.1 CDS SERP2181 NC_002976.3 2214989 2215114 R hypothetical protein complement(2214989..2215114) Staphylococcus epidermidis RP62A 3240761 YP_189738.1 CDS nrdG NC_002976.3 2215128 2215664 R identified by match to protein family HMM PF02143; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2215128..2215664) Staphylococcus epidermidis RP62A 3240762 YP_189739.1 CDS nrdD NC_002976.3 2215661 2217511 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2215661..2217511) Staphylococcus epidermidis RP62A 3240763 YP_189740.1 CDS SERP2184 NC_002976.3 2217830 2218135 R hypothetical protein complement(2217830..2218135) Staphylococcus epidermidis RP62A 3242487 YP_189741.1 CDS cysC NC_002976.3 2218459 2219058 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(2218459..2219058) Staphylococcus epidermidis RP62A 3242411 YP_189742.1 CDS sat NC_002976.3 2219074 2220252 R ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase complement(2219074..2220252) Staphylococcus epidermidis RP62A 3242412 YP_189743.1 CDS SERP2187 NC_002976.3 2220276 2221175 R identified by similarity to EGAD:108052; match to protein family HMM PF01925; hypothetical protein complement(2220276..2221175) Staphylococcus epidermidis RP62A 3242413 YP_189744.1 CDS SERP2188 NC_002976.3 2221197 2221808 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(2221197..2221808) Staphylococcus epidermidis RP62A 3242414 YP_189745.1 CDS SERP2189 NC_002976.3 2221883 2222662 R identified by similarity to EGAD:15084; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase complement(2221883..2222662) Staphylococcus epidermidis RP62A 3242415 YP_189746.1 CDS cysI NC_002976.3 2222684 2224402 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(2222684..2224402) Staphylococcus epidermidis RP62A 3240571 YP_189747.1 CDS cysJ NC_002976.3 2224422 2226266 R identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; sulfite reductase (NADPH) flavoprotein alpha-component complement(2224422..2226266) Staphylococcus epidermidis RP62A 3240572 YP_189748.1 CDS cysH NC_002976.3 2226564 2227295 R identified by similarity to EGAD:108231; match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosophoadenylyl-sulfate reductase complement(2226564..2227295) Staphylococcus epidermidis RP62A 3242444 YP_189749.1 CDS SERP2193 NC_002976.3 2227498 2227617 D hypothetical protein 2227498..2227617 Staphylococcus epidermidis RP62A 3242445 YP_189750.1 CDS gpxA-2 NC_002976.3 2227609 2228085 R identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase complement(2227609..2228085) Staphylococcus epidermidis RP62A 3241551 YP_189751.1 CDS SERP2195 NC_002976.3 2228098 2229441 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase complement(2228098..2229441) Staphylococcus epidermidis RP62A 3241552 YP_189752.1 CDS SERP2196 NC_002976.3 2229458 2229898 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2229458..2229898) Staphylococcus epidermidis RP62A 3241553 YP_189753.1 CDS SERP2197 NC_002976.3 2230118 2230867 R hypothetical protein complement(2230118..2230867) Staphylococcus epidermidis RP62A 3241554 YP_189754.1 CDS SERP2198 NC_002976.3 2230873 2232129 R identified by similarity to OMNI:NTL01SA0238; hypothetical protein complement(2230873..2232129) Staphylococcus epidermidis RP62A 3241555 YP_189755.1 CDS SERP2199 NC_002976.3 2232343 2233452 R hypothetical protein complement(2232343..2233452) Staphylococcus epidermidis RP62A 3241661 YP_189756.1 CDS SERP2200 NC_002976.3 2233912 2234016 R hypothetical protein complement(2233912..2234016) Staphylococcus epidermidis RP62A 3241662 YP_189757.1 CDS SERP2201 NC_002976.3 2234763 2236355 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK complement(2234763..2236355) Staphylococcus epidermidis RP62A 3241663 YP_189758.1 CDS SERP2202 NC_002976.3 2236877 2237467 R identified by similarity to OMNI:NTL01SA0989; hypothetical protein complement(2236877..2237467) Staphylococcus epidermidis RP62A 3241664 YP_189759.1 CDS SERP2203 NC_002976.3 2237571 2239583 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2237571..2239583) Staphylococcus epidermidis RP62A 3241665 YP_189760.1 CDS SERP2204 NC_002976.3 2239585 2240334 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2239585..2240334) Staphylococcus epidermidis RP62A 3241493 YP_189761.1 CDS SERP2205 NC_002976.3 2240445 2241350 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(2240445..2241350) Staphylococcus epidermidis RP62A 3241494 YP_189762.1 CDS SERP2206 NC_002976.3 2241347 2242012 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2241347..2242012) Staphylococcus epidermidis RP62A 3241495 YP_189763.1 CDS SERP2207 NC_002976.3 2242043 2242222 R hypothetical protein complement(2242043..2242222) Staphylococcus epidermidis RP62A 3241543 YP_189764.1 CDS SERP2208 NC_002976.3 2242520 2243989 D identified by match to protein family HMM PF00245; alkaline phosphatase 2242520..2243989 Staphylococcus epidermidis RP62A 3241544 YP_189765.1 CDS SERP2209 NC_002976.3 2244112 2245656 R hypothetical protein complement(2244112..2245656) Staphylococcus epidermidis RP62A 3241545 YP_189766.1 CDS SERP2210 NC_002976.3 2245847 2248180 R identified by match to protein family HMM PF04464; glycosyl transferase, group 1 family protein complement(2245847..2248180) Staphylococcus epidermidis RP62A 3241546 YP_189767.1 CDS SERP2211 NC_002976.3 2248378 2248479 R identified by similarity to OMNI:SA2649; hypothetical protein complement(2248378..2248479) Staphylococcus epidermidis RP62A 3241547 YP_189768.1 CDS SERP2212 NC_002976.3 2248885 2250222 R identified by similarity to EGAD:108772; hypothetical protein complement(2248885..2250222) Staphylococcus epidermidis RP62A 3241548 YP_189769.1 CDS SERP2213 NC_002976.3 2251501 2251632 D hypothetical protein 2251501..2251632 Staphylococcus epidermidis RP62A 3241549 YP_189770.1 CDS SERP2214 NC_002976.3 2251642 2251923 D hypothetical protein 2251642..2251923 Staphylococcus epidermidis RP62A 3241550 YP_189771.1 CDS SERP2215 NC_002976.3 2252357 2252542 D identified by similarity to OMNI:NTL01SA2594; hypothetical protein 2252357..2252542 Staphylococcus epidermidis RP62A 3243003 YP_189772.1 CDS SERP2216 NC_002976.3 2252735 2253673 R identified by match to protein family HMM PF00294; ribokinase complement(2252735..2253673) Staphylococcus epidermidis RP62A 3242952 YP_189773.1 CDS SERP2217 NC_002976.3 2253837 2255003 R identified by match to protein family HMM PF02133; cytosine/purines, uracil, thiamine, allantoin permease family protein complement(2253837..2255003) Staphylococcus epidermidis RP62A 3242953 YP_189774.1 CDS SERP2218 NC_002976.3 2255022 2256008 R identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase complement(2255022..2256008) Staphylococcus epidermidis RP62A 3242954 YP_189775.1 CDS SERP2220 NC_002976.3 2257002 2257433 D identified by match to protein family HMM PF00582; universal stress protein 2257002..2257433 Staphylococcus epidermidis RP62A 3242956 YP_189776.1 CDS SERP2221 NC_002976.3 2257793 2258410 D identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779; cadmium resistance family protein 2257793..2258410 Staphylococcus epidermidis RP62A 3242957 YP_189777.1 CDS cadC NC_002976.3 2258429 2258776 D identified by similarity to EGAD:7403; match to protein family HMM PF01022; CadC family transcriptional regulator 2258429..2258776 Staphylococcus epidermidis RP62A 3242958 YP_189778.1 CDS SERP2223 NC_002976.3 2259315 2259416 R hypothetical protein complement(2259315..2259416) Staphylococcus epidermidis RP62A 3242228 YP_189779.1 CDS SERP2224 NC_002976.3 2259614 2259763 R metallothionein 2-related protein complement(2259614..2259763) Staphylococcus epidermidis RP62A 3242229 YP_189780.1 CDS SERP2225 NC_002976.3 2259780 2260124 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(2259780..2260124) Staphylococcus epidermidis RP62A 3242230 YP_189781.1 CDS SERP2226 NC_002976.3 2260478 2260606 D hypothetical protein 2260478..2260606 Staphylococcus epidermidis RP62A 3242505 YP_189782.1 CDS SERP2227 NC_002976.3 2260680 2260847 R hypothetical protein complement(2260680..2260847) Staphylococcus epidermidis RP62A 3242506 YP_189783.1 CDS SERP2228 NC_002976.3 2260878 2261120 R identified by similarity to EGAD:164435; hypothetical protein complement(2260878..2261120) Staphylococcus epidermidis RP62A 3242507 YP_189784.1 CDS SERP2230 NC_002976.3 2261856 2262131 D hypothetical protein 2261856..2262131 Staphylococcus epidermidis RP62A 3242509 YP_189785.1 CDS SERP2232 NC_002976.3 2262635 2263774 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(2262635..2263774) Staphylococcus epidermidis RP62A 3242541 YP_189786.1 CDS SERP2233 NC_002976.3 2263927 2264748 D identified by match to protein family HMM PF00126; LysR family transcriptional regulator 2263927..2264748 Staphylococcus epidermidis RP62A 3242542 YP_189787.1 CDS SERP2234 NC_002976.3 2265275 2266006 D hypothetical protein 2265275..2266006 Staphylococcus epidermidis RP62A 3242543 YP_189788.1 CDS SERP2235 NC_002976.3 2266163 2266258 D identified by similarity to GP:14020893; hypothetical protein 2266163..2266258 Staphylococcus epidermidis RP62A 3242322 YP_189789.1 CDS SERP2236 NC_002976.3 2266411 2267010 D hypothetical protein 2266411..2267010 Staphylococcus epidermidis RP62A 3242323 YP_189790.1 CDS SERP2238 NC_002976.3 2267485 2267580 R hypothetical protein complement(2267485..2267580) Staphylococcus epidermidis RP62A 3242325 YP_189791.1 CDS SERP2240 NC_002976.3 2268146 2268628 R identified by similarity to EGAD:37318; match to protein family HMM PF01797; IS200 family transposase complement(2268146..2268628) Staphylococcus epidermidis RP62A 3242687 YP_189792.1 CDS SERP2241 NC_002976.3 2268844 2269290 R transcriptional regulator complement(2268844..2269290) Staphylococcus epidermidis RP62A 3242688 YP_189793.1 CDS ipdC NC_002976.3 2269462 2271111 D identified by similarity to EGAD:20234; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase 2269462..2271111 Staphylococcus epidermidis RP62A 3242689 YP_189794.1 CDS SERP2243 NC_002976.3 2271304 2271429 R hypothetical protein complement(2271304..2271429) Staphylococcus epidermidis RP62A 3242690 YP_189795.1 CDS SERP2244 NC_002976.3 2271458 2272624 R capA-related protein complement(2271458..2272624) Staphylococcus epidermidis RP62A 3242691 YP_189796.1 CDS SERP2245 NC_002976.3 2272878 2273636 R identified by similarity to GP:7453518; match to protein family HMM PF00756; tributyrin esterase EstA complement(2272878..2273636) Staphylococcus epidermidis RP62A 3240477 YP_189797.1 CDS SERP2246 NC_002976.3 2273928 2274614 R Crp/Fnr family transcriptional regulator complement(2273928..2274614) Staphylococcus epidermidis RP62A 3240478 YP_189798.1 CDS arcD NC_002976.3 2274833 2276236 R identified by similarity to EGAD:21315; match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(2274833..2276236) Staphylococcus epidermidis RP62A 3240479 YP_189799.1 CDS SERP2248 NC_002976.3 2276328 2276468 D hypothetical protein 2276328..2276468 Staphylococcus epidermidis RP62A 3242553 YP_189800.1 CDS arcB-1 NC_002976.3 2276501 2277508 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(2276501..2277508) Staphylococcus epidermidis RP62A 3242554 YP_189801.1 CDS arcA NC_002976.3 2277613 2278848 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(2277613..2278848) Staphylococcus epidermidis RP62A 3242330 YP_189802.1 CDS SERP2251 NC_002976.3 2279187 2279648 R identified by similarity to EGAD:124606; match to protein family HMM PF02863; ArgR family transcriptional regulator complement(2279187..2279648) Staphylococcus epidermidis RP62A 3242683 YP_189803.1 CDS sepA NC_002976.3 2280162 2281685 R identified by similarity to EGAD:16884; match to protein family HMM PF01447; match to protein family HMM PF02868; extracellular elastase precursor complement(2280162..2281685) Staphylococcus epidermidis RP62A 3242684 YP_189804.1 CDS SERP2253 NC_002976.3 2282118 2283362 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2282118..2283362) Staphylococcus epidermidis RP62A 3242685 YP_189805.1 CDS SERP2254 NC_002976.3 2283725 2284201 D identified by similarity to PIR:G90071; hypothetical protein 2283725..2284201 Staphylococcus epidermidis RP62A 3242686 YP_189806.1 CDS SERP2255 NC_002976.3 2284405 2285319 D identified by similarity to OMNI:NTL01SA1369; hypothetical protein 2284405..2285319 Staphylococcus epidermidis RP62A 3240480 YP_189807.1 CDS SERP2256 NC_002976.3 2285300 2285470 D hypothetical protein 2285300..2285470 Staphylococcus epidermidis RP62A 3240481 YP_189808.1 CDS SERP2257 NC_002976.3 2285934 2286722 R identified by similarity to GP:5777659; match to protein family HMM PF00106; match to protein family HMM PF00678; acetoin reductase complement(2285934..2286722) Staphylococcus epidermidis RP62A 3240482 YP_189809.1 CDS SERP2258 NC_002976.3 2287012 2287146 D identified by similarity to GP:1778753; hemolysin 2287012..2287146 Staphylococcus epidermidis RP62A 3240483 YP_189810.1 CDS SERP2259 NC_002976.3 2287464 2289335 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 2287464..2289335 Staphylococcus epidermidis RP62A 3240484 YP_189811.1 CDS SERP2260 NC_002976.3 2289420 2291360 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose-specific IIABC components 2289420..2291360 Staphylococcus epidermidis RP62A 3240485 YP_189812.1 CDS manA-2 NC_002976.3 2291376 2292326 D identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2291376..2292326 Staphylococcus epidermidis RP62A 3242552 YP_189813.1 CDS SERP2262 NC_002976.3 2292637 2295501 R identified by similarity to SP:P49022; phage infection protein complement(2292637..2295501) Staphylococcus epidermidis RP62A 3242094 YP_189814.1 CDS SERP2263 NC_002976.3 2295783 2297750 D identified by match to protein family HMM PF01832; match to protein family HMM PF05257; N-acetylmuramoyl-L-alanine amidase 2295783..2297750 Staphylococcus epidermidis RP62A 3242095 YP_189815.1 CDS SERP2264 NC_002976.3 2298118 2300148 R cell wall surface anchor family protein complement(2298118..2300148) Staphylococcus epidermidis RP62A 3242096 YP_189816.1 CDS SERP2265 NC_002976.3 2300398 2300826 D identified by similarity to SP:O68390; match to protein family HMM PF02566; organic hydroperoxide resistance protein 2300398..2300826 Staphylococcus epidermidis RP62A 3242097 YP_189817.1 CDS SERP2266 NC_002976.3 2300851 2301039 R hypothetical protein complement(2300851..2301039) Staphylococcus epidermidis RP62A 3242098 YP_189818.1 CDS SERP2267 NC_002976.3 2301140 2301316 D hypothetical protein 2301140..2301316 Staphylococcus epidermidis RP62A 3242099 YP_189819.1 CDS SERP2268 NC_002976.3 2301515 2301670 R identified by similarity to GP:8918792; truncated IS1272 transposase complement(2301515..2301670) Staphylococcus epidermidis RP62A 3242100 YP_189820.1 CDS SERP2269 NC_002976.3 2302067 2302756 R identified by similarity to OMNI:NTL01SA2547; hypothetical protein complement(2302067..2302756) Staphylococcus epidermidis RP62A 3242101 YP_189821.1 CDS SERP2270 NC_002976.3 2302918 2304090 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(2302918..2304090) Staphylococcus epidermidis RP62A 3242299 YP_189822.1 CDS SERP2271 NC_002976.3 2304431 2304787 D identified by similarity to OMNI:NTL01SA2550; hypothetical protein 2304431..2304787 Staphylococcus epidermidis RP62A 3242300 YP_189823.1 CDS SERP2272 NC_002976.3 2304937 2305416 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A complement(2304937..2305416) Staphylococcus epidermidis RP62A 3241016 YP_189824.1 CDS SERP2273 NC_002976.3 2305586 2305933 R identified by similarity to EGAD:107653; hypothetical protein complement(2305586..2305933) Staphylococcus epidermidis RP62A 3241017 YP_189825.1 CDS SERP2274 NC_002976.3 2306039 2307379 R identified by similarity to OMNI:NTL01SA2539; hypothetical protein complement(2306039..2307379) Staphylococcus epidermidis RP62A 3241018 YP_189826.1 CDS SERP2275 NC_002976.3 2307372 2308880 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(2307372..2308880) Staphylococcus epidermidis RP62A 3241019 YP_189827.1 CDS SERP2276 NC_002976.3 2308898 2311288 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(2308898..2311288) Staphylococcus epidermidis RP62A 3241020 YP_189828.1 CDS SERP2278 NC_002976.3 2311840 2313408 R identified by similarity to OMNI:NTL01SA2543; hypothetical protein complement(2311840..2313408) Staphylococcus epidermidis RP62A 3240876 YP_189829.1 CDS SERP2279 NC_002976.3 2313389 2314945 R identified by similarity to OMNI:NTL01SA2544; hypothetical protein complement(2313389..2314945) Staphylococcus epidermidis RP62A 3240877 YP_189830.1 CDS secY NC_002976.3 2314963 2316162 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2314963..2316162) Staphylococcus epidermidis RP62A 3240878 YP_189831.1 CDS SERP2281 NC_002976.3 2316305 2321917 R identified by match to protein family HMM PF05345; serine threonine rich antigen complement(2316305..2321917) Staphylococcus epidermidis RP62A 3241091 YP_189832.1 CDS SERP2282 NC_002976.3 2322337 2323638 R hypothetical protein complement(2322337..2323638) Staphylococcus epidermidis RP62A 3241092 YP_189833.1 CDS SERP2283 NC_002976.3 2323914 2324729 R identified by match to protein family HMM PF00528; phosphonate ABC transporter permease complement(2323914..2324729) Staphylococcus epidermidis RP62A 3241093 YP_189834.1 CDS SERP2284 NC_002976.3 2324726 2325526 R identified by match to protein family HMM PF00528; phosphonate ABC transporter permease complement(2324726..2325526) Staphylococcus epidermidis RP62A 3241094 YP_189835.1 CDS SERP2285 NC_002976.3 2325528 2326301 R identified by match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein complement(2325528..2326301) Staphylococcus epidermidis RP62A 3241095 YP_189836.1 CDS SERP2286 NC_002976.3 2326415 2327371 R phosphonate ABC transporter substrate-binding protein complement(2326415..2327371) Staphylococcus epidermidis RP62A 3241773 YP_189837.1 CDS SERP2287 NC_002976.3 2327606 2329156 D hypothetical protein 2327606..2329156 Staphylococcus epidermidis RP62A 3241774 YP_189838.1 CDS SERP2288 NC_002976.3 2329253 2330788 D identified by match to protein family HMM PF00149; match to protein family HMM PF01009; match to protein family HMM PF02872; 5'-nucleotidase 2329253..2330788 Staphylococcus epidermidis RP62A 3241775 YP_189839.1 CDS SERP2289 NC_002976.3 2330888 2332063 R transporter complement(2330888..2332063) Staphylococcus epidermidis RP62A 3241776 YP_189840.1 CDS SERP2290 NC_002976.3 2332514 2332627 D hypothetical protein 2332514..2332627 Staphylococcus epidermidis RP62A 3241777 YP_189841.1 CDS SERP2291 NC_002976.3 2333271 2333378 D hypothetical protein 2333271..2333378 Staphylococcus epidermidis RP62A 3241778 YP_189842.1 CDS icaR NC_002976.3 2333498 2334055 R identified by similarity to OMNI:SA2688; match to protein family HMM PF00440; intercellular adhesion regulator complement(2333498..2334055) Staphylococcus epidermidis RP62A 3241779 YP_189843.1 CDS icaA NC_002976.3 2334220 2335458 D predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2334220..2335458 Staphylococcus epidermidis RP62A 3240428 YP_189844.1 CDS icaD NC_002976.3 2335422 2335727 D identified by similarity to GP:2914128; intercellular adhesion protein D 2335422..2335727 Staphylococcus epidermidis RP62A 3240436 YP_189845.1 CDS icaB NC_002976.3 2335724 2336593 D identified by match to protein family HMM PF01522; intercellular adhesion protein B 2335724..2336593 Staphylococcus epidermidis RP62A 3242231 YP_189846.1 CDS icaC NC_002976.3 2336580 2337647 D identified by match to protein family HMM PF01757; intercellular adhesion protein C 2336580..2337647 Staphylococcus epidermidis RP62A 3242232 YP_189847.1 CDS geh-1 NC_002976.3 2337843 2339909 R identified by similarity to GP:2981225; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase complement(2337843..2339909) Staphylococcus epidermidis RP62A 3242233 YP_189848.1 CDS SERP2298 NC_002976.3 2339963 2340103 D hypothetical protein 2339963..2340103 Staphylococcus epidermidis RP62A 3242234 YP_189849.1 CDS SERP2299 NC_002976.3 2340315 2341100 D identified by match to protein family HMM PF00797; N-acetyltransferase 2340315..2341100 Staphylococcus epidermidis RP62A 3242235 YP_189850.1 CDS hisIE NC_002976.3 2341209 2341844 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(2341209..2341844) Staphylococcus epidermidis RP62A 3242236 YP_189851.1 CDS hisF NC_002976.3 2341841 2342599 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2341841..2342599) Staphylococcus epidermidis RP62A 3242475 YP_189852.1 CDS hisA NC_002976.3 2342596 2343300 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2342596..2343300) Staphylococcus epidermidis RP62A 3242476 YP_189853.1 CDS hisH NC_002976.3 2343293 2343871 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2343293..2343871) Staphylococcus epidermidis RP62A 3242477 YP_189854.1 CDS hisB NC_002976.3 2343868 2344446 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2343868..2344446) Staphylococcus epidermidis RP62A 3242478 YP_189855.1 CDS hisD NC_002976.3 2344562 2345806 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2344562..2345806) Staphylococcus epidermidis RP62A 3240932 YP_189856.1 CDS hisG NC_002976.3 2345799 2346413 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase complement(2345799..2346413) Staphylococcus epidermidis RP62A 3240933 YP_189857.1 CDS hisZ NC_002976.3 2346438 2347250 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase complement(2346438..2347250) Staphylococcus epidermidis RP62A 3240934 YP_189858.1 CDS SERP2308 NC_002976.3 2347487 2347903 R identified by similarity to OMNI:NTL01BH0425; hypothetical protein complement(2347487..2347903) Staphylococcus epidermidis RP62A 3242934 YP_189859.1 CDS SERP2309 NC_002976.3 2348006 2348416 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2348006..2348416 Staphylococcus epidermidis RP62A 3242935 YP_189860.1 CDS SERP2311 NC_002976.3 2349132 2349650 R identified by match to protein family HMM PF00583; acetyltransferase complement(2349132..2349650) Staphylococcus epidermidis RP62A 3242937 YP_189861.1 CDS mqo-3 NC_002976.3 2350001 2351497 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2350001..2351497 Staphylococcus epidermidis RP62A 3242938 YP_189862.1 CDS SERP2313 NC_002976.3 2352266 2352370 R hypothetical protein complement(2352266..2352370) Staphylococcus epidermidis RP62A 3242939 YP_189863.1 CDS SERP2314 NC_002976.3 2352715 2353230 D identified by similarity to OMNI:SA2711; match to protein family HMM PF04264; hypothetical protein 2352715..2353230 Staphylococcus epidermidis RP62A 3242940 YP_189864.1 CDS drp35 NC_002976.3 2353490 2354467 R identified by similarity to GP:6441050; match to protein family HMM PF03758; drp35 protein complement(2353490..2354467) Staphylococcus epidermidis RP62A 3242941 YP_189865.1 CDS SERP2316 NC_002976.3 2354749 2355711 D identified by match to protein family HMM PF00581; hypothetical protein 2354749..2355711 Staphylococcus epidermidis RP62A 3241120 YP_189866.1 CDS pcp NC_002976.3 2355905 2356543 D identified by similarity to EGAD:42780; match to protein family HMM PF01470; match to protein family HMM TIGR00504; pyrrolidone-carboxylate peptidase 2355905..2356543 Staphylococcus epidermidis RP62A 3242994 YP_189867.1 CDS SERP2318 NC_002976.3 2356576 2356968 R hypothetical protein complement(2356576..2356968) Staphylococcus epidermidis RP62A 3242995 YP_189868.1 CDS SERP2319 NC_002976.3 2356984 2357136 R hypothetical protein complement(2356984..2357136) Staphylococcus epidermidis RP62A 3242996 YP_189869.1 CDS SERP2320 NC_002976.3 2357317 2358909 D identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 2357317..2358909 Staphylococcus epidermidis RP62A 3242997 YP_189870.1 CDS SERP2321 NC_002976.3 2359074 2359586 R hypothetical protein complement(2359074..2359586) Staphylococcus epidermidis RP62A 3242998 YP_189871.1 CDS SERP2322 NC_002976.3 2359691 2359798 D hypothetical protein 2359691..2359798 Staphylococcus epidermidis RP62A 3242999 YP_189872.1 CDS SERP2323 NC_002976.3 2359862 2360017 R truncated IS1272 transposase complement(2359862..2360017) Staphylococcus epidermidis RP62A 3243000 YP_189873.1 CDS SERP2324 NC_002976.3 2360269 2361546 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(2360269..2361546) Staphylococcus epidermidis RP62A 3242407 YP_189874.1 CDS SERP2325 NC_002976.3 2361560 2362600 R identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780; acetoin dehydrogenase, E1 component, beta subunit complement(2361560..2362600) Staphylococcus epidermidis RP62A 3242408 YP_189875.1 CDS SERP2326 NC_002976.3 2362671 2363624 R identified by similarity to SP:P27745; match to protein family HMM PF00676; acetoin dehydrogenase, E1 component, alpha subunit complement(2362671..2363624) Staphylococcus epidermidis RP62A 3242409 YP_189876.1 CDS SERP2327 NC_002976.3 2363666 2365018 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase complement(2363666..2365018) Staphylococcus epidermidis RP62A 3242410 YP_189877.1 CDS SERP2328 NC_002976.3 2365343 2366761 D identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 2365343..2366761 Staphylococcus epidermidis RP62A 3242240 YP_189878.1 CDS SERP2329 NC_002976.3 2366772 2366873 R hypothetical protein complement(2366772..2366873) Staphylococcus epidermidis RP62A 3242241 YP_189879.1 CDS SERP2330 NC_002976.3 2367078 2367989 D identified by similarity to EGAD:28994; thiamine biosynthesis protein 2367078..2367989 Staphylococcus epidermidis RP62A 3240923 YP_189880.1 CDS rarD NC_002976.3 2368097 2369002 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; rarD protein complement(2368097..2369002) Staphylococcus epidermidis RP62A 3240924 YP_189881.1 CDS SERP2332 NC_002976.3 2369134 2369637 R identified by similarity to OMNI:SA0406; hypothetical protein complement(2369134..2369637) Staphylococcus epidermidis RP62A 3240925 YP_189882.1 CDS SERP2333 NC_002976.3 2369726 2371429 R identified by similarity to OMNI:VCA0786; hypothetical protein complement(2369726..2371429) Staphylococcus epidermidis RP62A 3242555 YP_189883.1 CDS SERP2334 NC_002976.3 2371584 2372924 R identified by match to protein family HMM PF00083; match to protein family HMM TIGR00879; major facilitator superfamily protein complement(2371584..2372924) Staphylococcus epidermidis RP62A 3242556 YP_189884.1 CDS SERP2335 NC_002976.3 2372970 2373065 D hypothetical protein 2372970..2373065 Staphylococcus epidermidis RP62A 3242557 YP_189885.1 CDS SERP2336 NC_002976.3 2373203 2375389 R identified by similarity to SP:Q02510; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase complement(2373203..2375389) Staphylococcus epidermidis RP62A 3242558 YP_189886.1 CDS SERP2337 NC_002976.3 2375760 2376383 R identified by match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase complement(2375760..2376383) Staphylococcus epidermidis RP62A 3242559 YP_189887.1 CDS SERP2338 NC_002976.3 2376393 2383556 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; peptide synthetase complement(2376393..2383556) Staphylococcus epidermidis RP62A 3242560 YP_189888.1 CDS SERP2339 NC_002976.3 2383754 2384995 R identified by similarity to OMNI:NTL01TV0222; drug transporter complement(2383754..2384995) Staphylococcus epidermidis RP62A 3242093 YP_189889.1 CDS SERP2340 NC_002976.3 2385517 2386935 R identified by match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(2385517..2386935) Staphylococcus epidermidis RP62A 3242102 YP_189890.1 CDS SERP2341 NC_002976.3 2387496 2387744 R hypothetical protein complement(2387496..2387744) Staphylococcus epidermidis RP62A 3242292 YP_189891.1 CDS SERP2342 NC_002976.3 2388076 2389524 D identified by similarity to GP:1856977; drug transporter 2388076..2389524 Staphylococcus epidermidis RP62A 3242293 YP_189892.1 CDS SERP2343 NC_002976.3 2389604 2389978 R identified by similarity to OMNI:SA0709; match to protein family HMM PF03610; phosphotransferase mannnose-specific family component IIA complement(2389604..2389978) Staphylococcus epidermidis RP62A 3242294 YP_189893.1 CDS SERP2344 NC_002976.3 2389982 2390557 R identified by match to protein family HMM PF02734; DAK2 domain-containing protein complement(2389982..2390557) Staphylococcus epidermidis RP62A 3242295 YP_189894.1 CDS SERP2345 NC_002976.3 2390612 2391574 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(2390612..2391574) Staphylococcus epidermidis RP62A 3242296 YP_189895.1 CDS gldA NC_002976.3 2391590 2392693 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(2391590..2392693) Staphylococcus epidermidis RP62A 3242297 YP_189896.1 CDS bioB NC_002976.3 2392998 2393963 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(2392998..2393963) Staphylococcus epidermidis RP62A 3242298 YP_189897.1 CDS fosB NC_002976.3 2395235 2395663 R catalyzes resistance to fosfomycin by the addition of a thiol cofactor; fosfomycin resistance protein FosB complement(2395235..2395663) Staphylococcus epidermidis RP62A 3241023 YP_189898.1 CDS SERP2350 NC_002976.3 2395767 2395991 R identified by similarity to OMNI:SA1099; hypothetical protein complement(2395767..2395991) Staphylococcus epidermidis RP62A 3240870 YP_189899.1 CDS arcB-2 NC_002976.3 2396476 2397477 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2396476..2397477 Staphylococcus epidermidis RP62A 3240871 YP_189900.1 CDS arcC NC_002976.3 2397500 2398432 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2397500..2398432 Staphylococcus epidermidis RP62A 3240872 YP_189901.1 CDS SERP2353 NC_002976.3 2398597 2400162 D identified by match to protein family HMM PF03606; hypothetical protein 2398597..2400162 Staphylococcus epidermidis RP62A 3240873 YP_189902.1 CDS SERP2354 NC_002976.3 2400433 2401200 R identified by similarity to GP:7453518; match to protein family HMM PF00756; tributyrin esterase EstA complement(2400433..2401200) Staphylococcus epidermidis RP62A 3240874 YP_189903.1 CDS SERP2355 NC_002976.3 2401241 2401888 R identified by similarity to EGAD:109206; match to protein family HMM PF00528; amino acid ABC transporter permease complement(2401241..2401888) Staphylococcus epidermidis RP62A 3240875 YP_189904.1 CDS SERP2356 NC_002976.3 2401891 2402850 R identified by similarity to EGAD:109208; match to protein family HMM PF04069; amino acid ABC transporter amino acid-binding protein complement(2401891..2402850) Staphylococcus epidermidis RP62A 3241096 YP_189905.1 CDS SERP2357 NC_002976.3 2402869 2403504 R identified by similarity to EGAD:109210; match to protein family HMM PF00528; amino acid ABC transporter permease complement(2402869..2403504) Staphylococcus epidermidis RP62A 3241097 YP_189906.1 CDS SERP2358 NC_002976.3 2403501 2404688 R identified by similarity to EGAD:109212; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; amino acid ABC transporter ATP-binding protein complement(2403501..2404688) Staphylococcus epidermidis RP62A 3241098 YP_189907.1 CDS SERP2359 NC_002976.3 2404823 2405311 R identified by similarity to OMNI:SA2343; hypothetical protein complement(2404823..2405311) Staphylococcus epidermidis RP62A 3241099 YP_189908.1 CDS SERP2360 NC_002976.3 2405308 2406273 R identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase complement(2405308..2406273) Staphylococcus epidermidis RP62A 3241100 YP_189909.1 CDS SERP2361 NC_002976.3 2406273 2407169 R identified by similarity to GP:9951711; match to protein family HMM PF05853; hypothetical protein complement(2406273..2407169) Staphylococcus epidermidis RP62A 3241771 YP_189910.1 CDS SERP2362 NC_002976.3 2407305 2407844 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2407305..2407844) Staphylococcus epidermidis RP62A 3241772 YP_189911.1 CDS brnQ-2 NC_002976.3 2408310 2409668 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid ABC transporter substrate-binding protein complement(2408310..2409668) Staphylococcus epidermidis RP62A 3240429 YP_189912.1 CDS SERP2364 NC_002976.3 2410022 2411239 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2410022..2411239 Staphylococcus epidermidis RP62A 3240430 YP_189913.1 CDS pflA NC_002976.3 2411378 2412133 R identified by similarity to SP:O68575; match to protein family HMM PF02143; match to protein family HMM PF04055; pyruvate formate-lyase-activating enzyme complement(2411378..2412133) Staphylococcus epidermidis RP62A 3240431 YP_189914.1 CDS pflB NC_002976.3 2412155 2414401 R identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(2412155..2414401) Staphylococcus epidermidis RP62A 3240432 YP_189915.1 CDS SERP2367 NC_002976.3 2415142 2416332 R transporter complement(2415142..2416332) Staphylococcus epidermidis RP62A 3240433 YP_189916.1 CDS SERP2368 NC_002976.3 2416344 2417093 R identified by similarity to EGAD:10112; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(2416344..2417093) Staphylococcus epidermidis RP62A 3240434 YP_189917.1 CDS SERP2369 NC_002976.3 2417086 2417901 R identified by similarity to EGAD:24096; match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(2417086..2417901) Staphylococcus epidermidis RP62A 3240435 YP_189918.1 CDS SERP2370 NC_002976.3 2417888 2418766 R identified by similarity to EGAD:128691; match to protein family HMM PF00528; peptide ABC transporter permease complement(2417888..2418766) Staphylococcus epidermidis RP62A 3242237 YP_189919.1 CDS SERP2371 NC_002976.3 2418763 2419698 R identified by similarity to GP:5457576; match to protein family HMM PF00528; peptide ABC transporter permease complement(2418763..2419698) Staphylococcus epidermidis RP62A 3242238 YP_189920.1 CDS SERP2372 NC_002976.3 2419711 2421309 R identified by similarity to EGAD:165398; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(2419711..2421309) Staphylococcus epidermidis RP62A 3242239 YP_189921.1 CDS SERP2373 NC_002976.3 2421360 2422652 R identified by similarity to OMNI:NTL01SA2353; hypothetical protein complement(2421360..2422652) Staphylococcus epidermidis RP62A 3242470 YP_189922.1 CDS SERP2374 NC_002976.3 2422645 2423460 R identified by similarity to OMNI:SA2478; hypothetical protein complement(2422645..2423460) Staphylococcus epidermidis RP62A 3242471 YP_189923.1 CDS SERP2375 NC_002976.3 2423457 2424296 R diaminopimelate epimerase complement(2423457..2424296) Staphylococcus epidermidis RP62A 3242472 YP_189924.1 CDS SERP2376 NC_002976.3 2424381 2424482 D hypothetical protein 2424381..2424482 Staphylococcus epidermidis RP62A 3242473 YP_189925.1 CDS SERP2377 NC_002976.3 2424484 2424930 D hypothetical protein 2424484..2424930 Staphylococcus epidermidis RP62A 3242474 YP_189926.1 CDS SERP2378 NC_002976.3 2424945 2425634 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2424945..2425634 Staphylococcus epidermidis RP62A 3240935 YP_189927.1 CDS SERP2379 NC_002976.3 2425762 2426535 R identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase complement(2425762..2426535) Staphylococcus epidermidis RP62A 3240936 YP_189928.1 CDS SERP2380 NC_002976.3 2426704 2428080 R identified by match to protein family HMM PF00083; drug transporter complement(2426704..2428080) Staphylococcus epidermidis RP62A 3240937 YP_189929.1 CDS SERP2381 NC_002976.3 2428109 2431126 R identified by similarity to EGAD:16535; match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF04205; match to protein family HMM TIGR01813; NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit complement(2428109..2431126) Staphylococcus epidermidis RP62A 3240938 YP_189930.1 CDS SERP2382 NC_002976.3 2431209 2432126 R identified by match to protein family HMM PF02424; ApbE family protein complement(2431209..2432126) Staphylococcus epidermidis RP62A 3241840 YP_189931.1 CDS SERP2383 NC_002976.3 2432528 2433523 R identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(2432528..2433523) Staphylococcus epidermidis RP62A 3241841 YP_189932.1 CDS SERP2384 NC_002976.3 2433780 2434886 D identified by similarity to OMNI:NTL01SA2469; hypothetical protein 2433780..2434886 Staphylococcus epidermidis RP62A 3241842 YP_189933.1 CDS SERP2385 NC_002976.3 2434880 2436262 D identified by similarity to EGAD:7439; hypothetical protein 2434880..2436262 Staphylococcus epidermidis RP62A 3242942 YP_189934.1 CDS SERP2386 NC_002976.3 2436232 2437113 D identified by match to protein family HMM PF02492; cobalamin synthesis protein 2436232..2437113 Staphylococcus epidermidis RP62A 3241024 YP_189935.1 CDS geh-2 NC_002976.3 2438258 2440189 R identified by similarity to GP:3789932; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase complement(2438258..2440189) Staphylococcus epidermidis RP62A 3241026 YP_189936.1 CDS SERP2389 NC_002976.3 2440410 2440529 D hypothetical protein 2440410..2440529 Staphylococcus epidermidis RP62A 3241027 YP_189937.1 CDS sspB NC_002976.3 2440678 2441865 D identified by similarity to OMNI:SA1056; match to protein family HMM PF05543; cysteine protease precursor SspB 2440678..2441865 Staphylococcus epidermidis RP62A 3241028 YP_189938.1 CDS sspC NC_002976.3 2441883 2442200 D identified by similarity to OMNI:SA1971; SspC protein 2441883..2442200 Staphylococcus epidermidis RP62A 3241029 YP_189939.1 CDS bhp NC_002976.3 2442370 2449578 R identified by match to protein family HMM PF00746; match to protein family HMM PF00801; match to protein family HMM PF04650; match to protein family HMM PF05345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall associated biofilm protein complement(2442370..2449578) Staphylococcus epidermidis RP62A 3241119 YP_189940.1 CDS bioW NC_002976.3 2449900 2450586 R catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase complement(2449900..2450586) Staphylococcus epidermidis RP62A 3243001 YP_189941.1 CDS SERP2394 NC_002976.3 2450579 2451712 R identified by match to protein family HMM PF00155; match to protein family HMM PF00222; aminotransferase, class II complement(2450579..2451712) Staphylococcus epidermidis RP62A 3243002 YP_189942.1 CDS bioA NC_002976.3 2451723 2453078 R identified by similarity to EGAD:45704; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2451723..2453078) Staphylococcus epidermidis RP62A 3242401 YP_189943.1 CDS bioD NC_002976.3 2453071 2453742 R identified by similarity to SP:P22818; match to protein family HMM PF01656; match to protein family HMM TIGR00347; dethiobiotin synthase complement(2453071..2453742) Staphylococcus epidermidis RP62A 3242402 YP_189944.1 CDS SERP2397 NC_002976.3 2454081 2454233 R identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 complement(2454081..2454233) Staphylococcus epidermidis RP62A 3242403 YP_189945.1 CDS aap NC_002976.3 2454490 2461683 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; accumulation associated protein complement(2454490..2461683) Staphylococcus epidermidis RP62A 3242404 YP_189946.1 CDS SERP2399 NC_002976.3 2461814 2461912 D hypothetical protein 2461814..2461912 Staphylococcus epidermidis RP62A 3242405 YP_189947.1 CDS SERP2400 NC_002976.3 2462102 2462254 R identified by similarity to GP:3212079; match to protein family HMM PF05480; phenol soluble modulin beta 1 complement(2462102..2462254) Staphylococcus epidermidis RP62A 3242406 YP_189948.1 CDS SERP2401 NC_002976.3 2462460 2463194 R identified by match to protein family HMM PF00089; serine protease complement(2462460..2463194) Staphylococcus epidermidis RP62A 3242242 YP_189949.1 CDS SERP2402 NC_002976.3 2463271 2463432 D hypothetical protein 2463271..2463432 Staphylococcus epidermidis RP62A 3242243 YP_189950.1 CDS SERP2403 NC_002976.3 2463875 2464216 D hypothetical protein 2463875..2464216 Staphylococcus epidermidis RP62A 3242244 YP_189951.1 CDS SERP2404 NC_002976.3 2464409 2465383 D iron ABC transporter substrate-binding protein 2464409..2465383 Staphylococcus epidermidis RP62A 3242245 YP_189952.1 CDS SERP2405 NC_002976.3 2465380 2466918 D identified by match to protein family HMM PF02518; sensor histidine kinase 2465380..2466918 Staphylococcus epidermidis RP62A 3242246 YP_189953.1 CDS SERP2406 NC_002976.3 2466930 2467685 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family transcriptional regulator 2466930..2467685 Staphylococcus epidermidis RP62A 3242247 YP_189954.1 CDS SERP2408 NC_002976.3 2469380 2469874 D identified by similarity to OMNI:NTL01SA0223; match to protein family HMM PF04140; hypothetical protein 2469380..2469874 Staphylococcus epidermidis RP62A 3242249 YP_189955.1 CDS SERP2410 NC_002976.3 2471339 2471446 R hypothetical protein complement(2471339..2471446) Staphylococcus epidermidis RP62A 3242944 YP_189956.1 CDS SERP2411 NC_002976.3 2471753 2472520 R identified by match to protein family HMM PF00106; match to protein family HMM PF00678; short chain dehydrogenase/reductase family oxidoreductase complement(2471753..2472520) Staphylococcus epidermidis RP62A 3242945 YP_189957.1 CDS mqo-4 NC_002976.3 2473294 2474778 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2473294..2474778) Staphylococcus epidermidis RP62A 3242946 YP_189958.1 CDS SERP2413 NC_002976.3 2474977 2475957 D identified by similarity to OMNI:NTL01SA0092; match to protein family HMM PF01207; hypothetical protein 2474977..2475957 Staphylococcus epidermidis RP62A 3242947 YP_189959.1 CDS SERP2414 NC_002976.3 2476275 2476634 D identified by similarity to GP:13491619; lipoprotein 2476275..2476634 Staphylococcus epidermidis RP62A 3242948 YP_189960.1 CDS SERP2415 NC_002976.3 2476845 2476940 D hypothetical protein 2476845..2476940 Staphylococcus epidermidis RP62A 3242949 YP_189961.1 CDS SERP2416 NC_002976.3 2477064 2477180 R hypothetical protein complement(2477064..2477180) Staphylococcus epidermidis RP62A 3242950 YP_189962.1 CDS SERP2417 NC_002976.3 2477247 2478104 R lipoprotein complement(2477247..2478104) Staphylococcus epidermidis RP62A 3240926 YP_189963.1 CDS SERP2418 NC_002976.3 2478690 2479100 D identified by similarity to OMNI:NTL01SA2360; hypothetical protein 2478690..2479100 Staphylococcus epidermidis RP62A 3240927 YP_189964.1 CDS SERP2419 NC_002976.3 2479343 2479528 R hypothetical protein complement(2479343..2479528) Staphylococcus epidermidis RP62A 3240928 YP_189965.1 CDS SERP2420 NC_002976.3 2479838 2480083 R hypothetical protein complement(2479838..2480083) Staphylococcus epidermidis RP62A 3240929 YP_189966.1 CDS SERP2421 NC_002976.3 2480169 2481056 R identified by similarity to OMNI:SA0433; match to protein family HMM PF00924; hypothetical protein complement(2480169..2481056) Staphylococcus epidermidis RP62A 3240930 YP_189967.1 CDS SERP2422 NC_002976.3 2481410 2482195 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2481410..2482195) Staphylococcus epidermidis RP62A 3240931 YP_189968.1 CDS SERP2423 NC_002976.3 2482536 2483315 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2482536..2483315) Staphylococcus epidermidis RP62A 3242951 YP_189969.1 CDS SERP2424 NC_002976.3 2483570 2483698 R hypothetical protein complement(2483570..2483698) Staphylococcus epidermidis RP62A 3242387 YP_189970.1 CDS SERP2425 NC_002976.3 2483712 2484596 R identified by match to protein family HMM PF03773; hypothetical protein complement(2483712..2484596) Staphylococcus epidermidis RP62A 3242388 YP_189971.1 CDS SERP2426 NC_002976.3 2484684 2484977 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(2484684..2484977) Staphylococcus epidermidis RP62A 3242389 YP_189972.1 CDS arsD NC_002976.3 2485525 2485872 D arsenical resistance operon trans-acting repressor 2485525..2485872 Staphylococcus epidermidis RP62A 3242390 YP_189973.1 CDS arsA NC_002976.3 2485886 2487583 D identified by similarity to SP:O50593; match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase 2485886..2487583 Staphylococcus epidermidis RP62A 3242391 YP_189974.1 CDS arsR-2 NC_002976.3 2487733 2488047 D identified by similarity to EGAD:10168; match to protein family HMM PF01022; arsenical resistance operon repressor 2487733..2488047 Staphylococcus epidermidis RP62A 3242392 YP_189975.1 CDS arsB NC_002976.3 2488050 2489339 D identified by match to protein family HMM PF02040; match to protein family HMM TIGR00935; arsenical pump membrane protein 2488050..2489339 Staphylococcus epidermidis RP62A 3242393 YP_189976.1 CDS arsC-2 NC_002976.3 2489358 2489753 D catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 2489358..2489753 Staphylococcus epidermidis RP62A 3242360 YP_189977.1 CDS SERP2432 NC_002976.3 2489814 2490572 R identified by similarity to GP:7592615; match to protein family HMM PF01925; hypothetical protein complement(2489814..2490572) Staphylococcus epidermidis RP62A 3242361 YP_189978.1 CDS SERP2433 NC_002976.3 2490569 2490829 R identified by similarity to OMNI:SA0048; match to protein family HMM PF02583; hypothetical protein complement(2490569..2490829) Staphylococcus epidermidis RP62A 3242362 YP_189979.1 CDS SERP2434 NC_002976.3 2490968 2492038 D identified by match to protein family HMM PF00581; match to protein family HMM PF01206; rhodanese-like domain-containing protein 2490968..2492038 Staphylococcus epidermidis RP62A 3240665 YP_189980.1 CDS SERP2435 NC_002976.3 2492057 2493385 D identified by match to protein family HMM PF00581; match to protein family HMM PF00753; metallo-beta-lactamase 2492057..2493385 Staphylococcus epidermidis RP62A 3240666 YP_189981.1 CDS SERP2436 NC_002976.3 2493466 2493582 R hypothetical protein complement(2493466..2493582) Staphylococcus epidermidis RP62A 3240667 YP_189982.1 CDS SERP2437 NC_002976.3 2493858 2494403 R lipoprotein complement(2493858..2494403) Staphylococcus epidermidis RP62A 3240668 YP_189983.1 CDS SERP2438 NC_002976.3 2494421 2496484 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; cation transporter E1-E2 family ATPase complement(2494421..2496484) Staphylococcus epidermidis RP62A 3240669 YP_189984.1 CDS SERP2439 NC_002976.3 2496907 2497350 R hypothetical protein complement(2496907..2497350) Staphylococcus epidermidis RP62A 3240670 YP_189985.1 CDS SERP2441 NC_002976.3 2497936 2499297 R transporter complement(2497936..2499297) Staphylococcus epidermidis RP62A 3242348 YP_189986.1 CDS SERP2442 NC_002976.3 2499425 2499577 D hypothetical protein 2499425..2499577 Staphylococcus epidermidis RP62A 3242349 YP_189987.1 CDS SERP2443 NC_002976.3 2499631 2500392 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2499631..2500392) Staphylococcus epidermidis RP62A 3242350 YP_189988.1 CDS SERP2444 NC_002976.3 2500623 2500715 R hypothetical protein complement(2500623..2500715) Staphylococcus epidermidis RP62A 3242351 YP_189989.1 CDS SERP2445 NC_002976.3 2500712 2501497 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2500712..2501497) Staphylococcus epidermidis RP62A 3242352 YP_189990.1 CDS SERP2446 NC_002976.3 2501711 2502058 R identified by similarity to GP:4587882; PenN domain-containing protein complement(2501711..2502058) Staphylococcus epidermidis RP62A 3242258 YP_189991.1 CDS SERP2447 NC_002976.3 2502065 2502826 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2502065..2502826) Staphylococcus epidermidis RP62A 3242259 YP_189992.1 CDS SERP2448 NC_002976.3 2502918 2503196 R identified by similarity to OMNI:NTL01SA2367; hypothetical protein complement(2502918..2503196) Staphylococcus epidermidis RP62A 3242260 YP_189993.1 CDS SERP2449 NC_002976.3 2503206 2503532 R identified by similarity to OMNI:SA2495; hypothetical protein complement(2503206..2503532) Staphylococcus epidermidis RP62A 3240972 YP_189994.1 CDS SERP2451 NC_002976.3 2504912 2505694 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2504912..2505694) Staphylococcus epidermidis RP62A 3240974 YP_189995.1 CDS SERP2452 NC_002976.3 2505920 2506105 R hypothetical protein complement(2505920..2506105) Staphylococcus epidermidis RP62A 3240975 YP_189996.1 CDS SERP2453 NC_002976.3 2506108 2506887 R identified by similarity to OMNI:SA2497; match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2506108..2506887) Staphylococcus epidermidis RP62A 3240976 YP_189997.1 CDS SERP2454 NC_002976.3 2507320 2508177 R hypothetical protein complement(2507320..2508177) Staphylococcus epidermidis RP62A 3240977 YP_189998.1 CDS SERP2455 NC_002976.3 2509031 2509765 R identified by similarity to EGAD:161071; match to protein family HMM TIGR01877; hypothetical protein complement(2509031..2509765) Staphylococcus epidermidis RP62A 3240978 YP_189999.1 CDS SERP2456 NC_002976.3 2509762 2511030 R hypothetical protein complement(2509762..2511030) Staphylococcus epidermidis RP62A 3240979 YP_190000.1 CDS SERP2457 NC_002976.3 2511030 2512052 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899; CRISPR-associated Csm5 family protein complement(2511030..2512052) Staphylococcus epidermidis RP62A 3240980 YP_190001.1 CDS SERP2458 NC_002976.3 2512055 2512969 R identified by similarity to EGAD:160971; match to protein family HMM PF03757; match to protein family HMM TIGR01903; CRISPR-associated Csm4 family protein complement(2512055..2512969) Staphylococcus epidermidis RP62A 3240720 YP_190002.1 CDS SERP2459 NC_002976.3 2512974 2513618 R identified by similarity to EGAD:161002; match to protein family HMM PF03787; match to protein family HMM TIGR01867; CRISPR-associated Cmr4 family protein complement(2512974..2513618) Staphylococcus epidermidis RP62A 3240721 YP_190003.1 CDS SERP2460 NC_002976.3 2513620 2514006 R identified by similarity to EGAD:165031; match to protein family HMM TIGR01870; CRISPR-associated Csm2 family protein complement(2513620..2514006) Staphylococcus epidermidis RP62A 3240722 YP_190004.1 CDS SERP2461 NC_002976.3 2514048 2516321 R identified by similarity to OMNI:MT2890; match to protein family HMM TIGR01871; match to protein family HMM TIGR01872; CRISPR-associated Csm1 family protein complement(2514048..2516321) Staphylococcus epidermidis RP62A 3240723 YP_190005.1 CDS SERP2462 NC_002976.3 2516334 2516639 R identified by similarity to OMNI:NTL01SPL0813; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(2516334..2516639) Staphylococcus epidermidis RP62A 3240724 YP_190006.1 CDS cas1 NC_002976.3 2516639 2517544 R identified by similarity to GP:12721471; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(2516639..2517544) Staphylococcus epidermidis RP62A 3240725 YP_190007.1 CDS SERP2464 NC_002976.3 2518526 2518672 R hypothetical protein complement(2518526..2518672) Staphylococcus epidermidis RP62A 3240726 YP_190008.1 CDS SERP2465 NC_002976.3 2518785 2519564 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; lipoprotein complement(2518785..2519564) Staphylococcus epidermidis RP62A 3240727 YP_190009.1 CDS SERP2466 NC_002976.3 2520289 2520420 R hypothetical protein complement(2520289..2520420) Staphylococcus epidermidis RP62A 3240736 YP_190010.1 CDS SERP2467 NC_002976.3 2520514 2521017 D identified by similarity to OMNI:NTL01SA0058; hypothetical protein 2520514..2521017 Staphylococcus epidermidis RP62A 3240737 YP_190011.1 CDS SERP2468 NC_002976.3 2521032 2521253 D identified by similarity to GP:14021030; hypothetical protein 2521032..2521253 Staphylococcus epidermidis RP62A 3240738 YP_190012.1 CDS SERP2469 NC_002976.3 2521511 2522638 R identified by match to protein family HMM PF00107; alcohol dehydrogenase complement(2521511..2522638) Staphylococcus epidermidis RP62A 3240739 YP_190013.1 CDS SERP2470 NC_002976.3 2523162 2523659 D identified by match to protein family HMM PF00583; spermidine N1-acetyltransferase 2523162..2523659 Staphylococcus epidermidis RP62A 3241585 YP_190014.1 CDS SERP2471 NC_002976.3 2523971 2525116 R type I restriction-modification system S subunit complement(2523971..2525116) Staphylococcus epidermidis RP62A 3241586 YP_190015.1 CDS hsdM NC_002976.3 2525109 2526665 R identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(2525109..2526665) Staphylococcus epidermidis RP62A 3241587 YP_190016.1 CDS SERP2473 NC_002976.3 2526666 2527352 R hypothetical protein complement(2526666..2527352) Staphylococcus epidermidis RP62A 3242315 YP_190017.1 CDS hsdR NC_002976.3 2527339 2530131 R identified by similarity to EGAD:10320; match to protein family HMM PF04313; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit complement(2527339..2530131) Staphylococcus epidermidis RP62A 3242316 YP_190018.1 CDS SERP2475 NC_002976.3 2530339 2532159 R identified by similarity to GP:4894349; hypothetical protein complement(2530339..2532159) Staphylococcus epidermidis RP62A 3242317 YP_190019.1 CDS SERP2476 NC_002976.3 2532765 2533448 R GTP-binding protein complement(2532765..2533448) Staphylococcus epidermidis RP62A 3242318 YP_190020.1 CDS SERP2477 NC_002976.3 2533580 2534899 R hypothetical protein complement(2533580..2534899) Staphylococcus epidermidis RP62A 3242319 YP_190021.1 CDS SERP2478 NC_002976.3 2535278 2536519 R hypothetical protein complement(2535278..2536519) Staphylococcus epidermidis RP62A 3242320 YP_190022.1 CDS SERP2479 NC_002976.3 2536600 2538108 R identified by similarity to OMNI:NTL01SA0084; match to protein family HMM PF00069; hypothetical protein complement(2536600..2538108) Staphylococcus epidermidis RP62A 3242321 YP_190023.1 CDS SERP2480 NC_002976.3 2538223 2538849 D identified by similarity to OMNI:NTL01SA0083; hypothetical protein 2538223..2538849 Staphylococcus epidermidis RP62A 3242525 YP_190024.1 CDS SERP2481 NC_002976.3 2538939 2539226 D identified by similarity to GP:7594749; hypothetical protein 2538939..2539226 Staphylococcus epidermidis RP62A 3242526 YP_190025.1 CDS SERP2482 NC_002976.3 2539394 2539768 D identified by similarity to GP:7594750; hypothetical protein 2539394..2539768 Staphylococcus epidermidis RP62A 3242588 YP_190026.1 CDS SERP2483 NC_002976.3 2539968 2540864 D identified by similarity to GP:14245843; hypothetical protein 2539968..2540864 Staphylococcus epidermidis RP62A 3242589 YP_190027.1 CDS SERP2484 NC_002976.3 2540874 2541743 D identified by similarity to OMNI:NTL01SA0078; hypothetical protein 2540874..2541743 Staphylococcus epidermidis RP62A 3242590 YP_190028.1 CDS kdpC NC_002976.3 2542288 2542845 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(2542288..2542845) Staphylococcus epidermidis RP62A 3242591 YP_190029.1 CDS kdpB NC_002976.3 2542861 2544882 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(2542861..2544882) Staphylococcus epidermidis RP62A 3242592 YP_190030.1 CDS kdpA NC_002976.3 2544901 2546577 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2544901..2546577) Staphylococcus epidermidis RP62A 3242593 YP_190031.1 CDS SERP2488 NC_002976.3 2546650 2546793 D hypothetical protein 2546650..2546793 Staphylococcus epidermidis RP62A 3242594 YP_190032.1 CDS kdpD NC_002976.3 2546845 2549514 D identified by similarity to EGAD:18674; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 2546845..2549514 Staphylococcus epidermidis RP62A 3242595 YP_190033.1 CDS kdeP NC_002976.3 2549489 2550184 D identified by similarity to EGAD:91700; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdeP 2549489..2550184 Staphylococcus epidermidis RP62A 3240520 YP_190034.1 CDS SERP2491 NC_002976.3 2550930 2551832 D identified by match to protein family HMM PF03606; hypothetical protein 2550930..2551832 Staphylococcus epidermidis RP62A 3240521 YP_190035.1 CDS SERP2492 NC_002976.3 2552039 2552173 R hypothetical protein complement(2552039..2552173) Staphylococcus epidermidis RP62A 3240503 YP_190036.1 CDS SERP2494 NC_002976.3 2553735 2554781 D identified by similarity to OMNI:NTL01SA0065; hypothetical protein 2553735..2554781 Staphylococcus epidermidis RP62A 3240505 YP_190037.1 CDS SERP2495 NC_002976.3 2554974 2555270 D identified by similarity to OMNI:NTL01SA0064; hypothetical protein 2554974..2555270 Staphylococcus epidermidis RP62A 3240506 YP_190038.1 CDS SERP2496 NC_002976.3 2555270 2557063 D identified by similarity to OMNI:NTL01SA0063; hypothetical protein 2555270..2557063 Staphylococcus epidermidis RP62A 3240507 YP_190039.1 CDS SERP2497 NC_002976.3 2557181 2557282 D hypothetical protein 2557181..2557282 Staphylococcus epidermidis RP62A 3240508 YP_190040.1 CDS SERP2498 NC_002976.3 2557297 2558646 D identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239; cassette chromosome recombinase A 2557297..2558646 Staphylococcus epidermidis RP62A 3240509 YP_190041.1 CDS SERP2499 NC_002976.3 2558668 2560296 D identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239; cassette chromosome recombinase B 2558668..2560296 Staphylococcus epidermidis RP62A 3240865 YP_190042.1 CDS SERP2500 NC_002976.3 2560476 2560577 D hypothetical protein 2560476..2560577 Staphylococcus epidermidis RP62A 3240866 YP_190043.1 CDS SERP2501 NC_002976.3 2560814 2561164 D identified by similarity to OMNI:NTL01SA0060; hypothetical protein 2560814..2561164 Staphylococcus epidermidis RP62A 3242394 YP_190044.1 CDS SERP2502 NC_002976.3 2561157 2561249 D hypothetical protein 2561157..2561249 Staphylococcus epidermidis RP62A 3242395 YP_190045.1 CDS SERP2503 NC_002976.3 2561251 2561562 D identified by similarity to OMNI:NTL01SA0059; hypothetical protein 2561251..2561562 Staphylococcus epidermidis RP62A 3242353 YP_190046.1 CDS SERP2504 NC_002976.3 2561580 2562086 D identified by similarity to OMNI:NTL01SA0058; hypothetical protein 2561580..2562086 Staphylococcus epidermidis RP62A 3242354 YP_190047.1 CDS SERP2505 NC_002976.3 2562107 2562424 D identified by match to protein family HMM PF04002; RadC domain-containing protein 2562107..2562424 Staphylococcus epidermidis RP62A 3242355 YP_190048.1 CDS tnpA-3 NC_002976.3 2562543 2563628 D identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899; transposase A 2562543..2563628 Staphylococcus epidermidis RP62A 3242356 YP_190049.1 CDS tnpB-3 NC_002976.3 2563625 2565517 D identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899; transposase B 2563625..2565517 Staphylococcus epidermidis RP62A 3242357 YP_190050.1 CDS tnpC-3 NC_002976.3 2565524 2565901 D identified by similarity to EGAD:6135; transposase C 2565524..2565901 Staphylococcus epidermidis RP62A 3242358 YP_190051.1 CDS spC NC_002976.3 2566052 2566834 D identified by similarity to EGAD:9921; match to protein family HMM PF01909; streptomycin 3''-adenylyltransferase 2566052..2566834 Staphylococcus epidermidis RP62A 3242359 YP_190052.1 CDS ermA-3 NC_002976.3 2566960 2567691 R identified by similarity to EGAD:8703; match to protein family HMM PF00398; rRNA adenine N-6-methyltransferase complement(2566960..2567691) Staphylococcus epidermidis RP62A 3240671 YP_190054.1 CDS SERP2512 NC_002976.3 2568225 2568887 D hypothetical protein 2568225..2568887 Staphylococcus epidermidis RP62A 3241788 YP_190055.1 CDS SERP2513 NC_002976.3 2569226 2569855 R identified by match to protein family HMM PF01925; hypothetical protein complement(2569226..2569855) Staphylococcus epidermidis RP62A 3241789 YP_190056.1 CDS SERP2514 NC_002976.3 2569870 2570130 R identified by similarity to GP:14020990; match to protein family HMM PF02583; hypothetical protein complement(2569870..2570130) Staphylococcus epidermidis RP62A 3240672 YP_190057.1 CDS SERP2515 NC_002976.3 2570266 2571330 D identified by match to protein family HMM PF00581; match to protein family HMM PF01206; rhodanese-like domain-containing protein 2570266..2571330 Staphylococcus epidermidis RP62A 3240673 YP_190058.1 CDS xylR NC_002976.3 2572811 2573920 R identified by similarity to GP:14020995; match to protein family HMM PF00480; xylose repressor complement(2572811..2573920) Staphylococcus epidermidis RP62A 3242345 YP_190059.1 CDS SERP2518 NC_002976.3 2574115 2574327 R identified by similarity to GP:14020996; hypothetical protein complement(2574115..2574327) Staphylococcus epidermidis RP62A 3242346 YP_190060.1 CDS mecI NC_002976.3 2574428 2574799 R identified by similarity to EGAD:6173; match to protein family HMM PF03965; methicillin-resistance regulatory protein MecI complement(2574428..2574799) Staphylococcus epidermidis RP62A 3242261 YP_190061.1 CDS mecR1 NC_002976.3 2574799 2576556 R identified by similarity to EGAD:8249; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; methicillin-resistance regulatory protein MecR1 complement(2574799..2576556) Staphylococcus epidermidis RP62A 3242262 YP_190062.1 CDS mecA NC_002976.3 2576656 2578662 D identified by similarity to EGAD:16370; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 2' 2576656..2578662 Staphylococcus epidermidis RP62A 3242263 YP_190063.1 CDS SERP2522 NC_002976.3 2578708 2579136 R identified by match to protein family HMM PF01575; acyl dehydratase MaoC complement(2578708..2579136) Staphylococcus epidermidis RP62A 3242264 YP_190064.1 CDS SERP2523 NC_002976.3 2579233 2579976 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase UgpQ complement(2579233..2579976) Staphylococcus epidermidis RP62A 3242265 YP_190065.1 CDS SERP2524 NC_002976.3 2580485 2580715 R identified by similarity to OMNI:SA0030; hypothetical protein complement(2580485..2580715) Staphylococcus epidermidis RP62A 3240439 YP_190066.1 CDS SERP2525 NC_002976.3 2580813 2580980 R identified by similarity to GP:9937361; HMG-CoA synthase, truncation complement(2580813..2580980) Staphylococcus epidermidis RP62A 3242266 YP_190067.1 CDS SERP2526 NC_002976.3 2581238 2581912 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 2581238..2581912 Staphylococcus epidermidis RP62A 3240971 YP_190068.1 CDS SERP2527 NC_002976.3 2581944 2582183 R identified by similarity to OMNI:SA0027; hypothetical protein complement(2581944..2582183) Staphylococcus epidermidis RP62A 3240728 YP_190069.1 CDS SERP2528 NC_002976.3 2582598 2583893 R identified by similarity to OMNI:NTL01SA0026; hypothetical protein complement(2582598..2583893) Staphylococcus epidermidis RP62A 3240729 YP_190070.1 CDS SERP2529 NC_002976.3 2584176 2584655 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2584176..2584655) Staphylococcus epidermidis RP62A 3240730 YP_190071.1 CDS yycJ NC_002976.3 2585697 2586497 R identified by match to protein family HMM PF00753; metallo-beta-lactamase YycJ complement(2585697..2586497) Staphylococcus epidermidis RP62A 3240731 YP_190072.1 CDS yycI NC_002976.3 2587118 2587909 R identified by similarity to OMNI:SA0022; hypothetical protein complement(2587118..2587909) Staphylococcus epidermidis RP62A 3240732 YP_190073.1 CDS yycH NC_002976.3 2587910 2589247 R identified by similarity to GP:6689208; hypothetical protein complement(2587910..2589247) Staphylococcus epidermidis RP62A 3240733 YP_190074.1 CDS yycG NC_002976.3 2589240 2591072 R identified by similarity to OMNI:SA0020; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase YycG complement(2589240..2591072) Staphylococcus epidermidis RP62A 3240734 YP_190075.1 CDS yycF NC_002976.3 2591085 2591786 R identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator YycF complement(2591085..2591786) Staphylococcus epidermidis RP62A 3240735 YP_190076.1 CDS SERP2535 NC_002976.3 2591830 2591922 R hypothetical protein complement(2591830..2591922) Staphylococcus epidermidis RP62A 3241588 YP_190077.1 CDS purA NC_002976.3 2592839 2594122 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2592839..2594122) Staphylococcus epidermidis RP62A 3241589 YP_190078.1 CDS dnaB NC_002976.3 2594401 2595801 R identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase complement(2594401..2595801) Staphylococcus epidermidis RP62A 3241590 YP_190079.1 CDS rplI NC_002976.3 2595972 2596418 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2595972..2596418) Staphylococcus epidermidis RP62A 3241591 YP_190080.1 CDS SERP2539 NC_002976.3 2596415 2598382 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(2596415..2598382) Staphylococcus epidermidis RP62A 3241592 YP_190081.1 CDS SERP2540 NC_002976.3 2598411 2599337 R identified by similarity to OMNI:NTL01SA0014; hypothetical protein complement(2598411..2599337) Staphylococcus epidermidis RP62A 3241593 YP_190082.1 CDS SERP2541 NC_002976.3 2599586 2600554 R homoserine O-acetyltransferase complement(2599586..2600554) Staphylococcus epidermidis RP62A 3242312 YP_190083.1 CDS SERP2542 NC_002976.3 2600843 2601172 R identified by similarity to OMNI:NTL01SA0012; hypothetical protein complement(2600843..2601172) Staphylococcus epidermidis RP62A 3242313 YP_190084.1 CDS SERP2543 NC_002976.3 2601169 2601861 R identified by match to protein family HMM PF03591; azlC protein complement(2601169..2601861) Staphylococcus epidermidis RP62A 3242314 YP_190085.1 CDS hlb NC_002976.3 2602224 2603228 D identified by similarity to OMNI:SA2003; match to protein family HMM PF03372; beta-hemolysin 2602224..2603228 Staphylococcus epidermidis RP62A 3242527 YP_190086.1 CDS serS NC_002976.3 2603756 2605042 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2603756..2605042) Staphylococcus epidermidis RP62A 3242528 YP_190087.1 CDS SERP2546 NC_002976.3 2605087 2605179 D hypothetical protein 2605087..2605179 Staphylococcus epidermidis RP62A 3242529 YP_190088.1 CDS SERP2547 NC_002976.3 2605887 2606702 D identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; hypothetical protein 2605887..2606702 Staphylococcus epidermidis RP62A 3242530 YP_190089.1 CDS gyrA NC_002976.3 2607094 2609775 R identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase, A subunit complement(2607094..2609775) Staphylococcus epidermidis RP62A 3242531 YP_190090.1 CDS gyrB NC_002976.3 2609812 2611743 R identified by similarity to SP:P20832; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit complement(2609812..2611743) Staphylococcus epidermidis RP62A 3242532 YP_190091.1 CDS recF NC_002976.3 2611754 2612869 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(2611754..2612869) Staphylococcus epidermidis RP62A 3242533 YP_190092.1 CDS SERP2551 NC_002976.3 2612866 2613102 R identified by similarity to OMNI:SA0003; hypothetical protein complement(2612866..2613102) Staphylococcus epidermidis RP62A 3242534 YP_190093.1 CDS dnaN NC_002976.3 2613533 2614666 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(2613533..2614666) Staphylococcus epidermidis RP62A 3242587 YP_190094.1 CDS dnaA NC_002976.3 2614976 2616331 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(2614976..2616331) Staphylococcus epidermidis RP62A 3240513 YP_187530.1 CDS SEA0001 NC_006663.1 78 815 D identified by similarity to GP:7532833; match to protein family HMM PF04394; replication-associated protein 78..815 Staphylococcus epidermidis RP62A 3239133 YP_187531.1 CDS SEA0002 NC_006663.1 988 1632 R identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; truncated IS431mec-like transposase complement(988..1632) Staphylococcus epidermidis RP62A 3239134 YP_187532.1 CDS blaZ-2 NC_006663.1 1699 2544 R identified by similarity to SP:P00807; match to protein family HMM PF00144; beta-lactamase complement(1699..2544) Staphylococcus epidermidis RP62A 3239161 YP_187533.1 CDS blaR1-2 NC_006663.1 2651 4408 D identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569; regulatory protein BlaR1 2651..4408 Staphylococcus epidermidis RP62A 3239156 YP_187534.1 CDS blaI-2 NC_006663.1 4425 4778 D identified by similarity to EGAD:13370; match to protein family HMM PF03965; penicillinase repressor 4425..4778 Staphylococcus epidermidis RP62A 3239164 YP_187535.1 CDS SEA0006 NC_006663.1 5042 5620 D identified by match to protein family HMM PF00239; match to protein family HMM PF02796; resolvase family site-specific recombinase 5042..5620 Staphylococcus epidermidis RP62A 3239153 YP_187536.1 CDS SEA0007 NC_006663.1 5952 6095 D hypothetical protein 5952..6095 Staphylococcus epidermidis RP62A 3239163 YP_187537.1 CDS SEA0008 NC_006663.1 6361 7035 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 6361..7035 Staphylococcus epidermidis RP62A 3239135 YP_187538.1 CDS SEA0009 NC_006663.1 7077 7412 R transcriptional regulator, putative complement(7077..7412) Staphylococcus epidermidis RP62A 3239151 YP_187539.1 CDS aphA NC_006663.1 7688 8482 R identified by similarity to EGAD:5713; match to protein family HMM PF01636; aminoglycoside 3'-phosphotransferase complement(7688..8482) Staphylococcus epidermidis RP62A 3239150 YP_187540.1 CDS SEA0011 NC_006663.1 8575 9117 R identified by similarity to GP:12957030; match to protein family HMM PF00583; streptothricin acetyltransferase complement(8575..9117) Staphylococcus epidermidis RP62A 3239149 YP_187541.1 CDS aadE NC_006663.1 9114 9953 R identified by similarity to GP:12957029; match to protein family HMM PF04439; aminoglycoside 6-adenylyltransferase complement(9114..9953) Staphylococcus epidermidis RP62A 3239148 YP_187542.1 CDS SEA0013 NC_006663.1 9967 10080 R hypothetical protein complement(9967..10080) Staphylococcus epidermidis RP62A 3239146 YP_187543.1 CDS SEA0014 NC_006663.1 10055 10789 R UbiE/COQ5 family methlytransferase complement(10055..10789) Staphylococcus epidermidis RP62A 3239145 YP_187544.1 CDS SEA0015 NC_006663.1 10770 11639 R identified by similarity to GP:12957027; match to protein family HMM PF01909; hypothetical protein complement(10770..11639) Staphylococcus epidermidis RP62A 3239144 YP_187545.1 CDS SEA0016 NC_006663.1 12009 12659 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(12009..12659) Staphylococcus epidermidis RP62A 3239143 YP_187546.1 CDS SEA0017 NC_006663.1 12669 13799 R identified by similarity to OMNI:NTL01LL0262; ABC transporter, permease protein complement(12669..13799) Staphylococcus epidermidis RP62A 3239142 YP_187547.1 CDS SEA0018 NC_006663.1 13801 14505 R identified by match to protein family HMM PF00005; ABC transporter, ATP-binding protein complement(13801..14505) Staphylococcus epidermidis RP62A 3239141 YP_187548.1 CDS SEA0019 NC_006663.1 14756 15649 R identified by similarity to GP:3676414; hypothetical protein complement(14756..15649) Staphylococcus epidermidis RP62A 3239140 YP_187549.1 CDS SEA0020 NC_006663.1 15693 16367 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; IS431mec-like transposase 15693..16367 Staphylococcus epidermidis RP62A 3239139 YP_187550.1 CDS SEA0021 NC_006663.1 16413 17039 D identified by similarity to OMNI:SA0028; match to protein family HMM PF00665; truncated IS431mec-like transposase 16413..17039 Staphylococcus epidermidis RP62A 3239138 YP_187551.1 CDS SEA0022 NC_006663.1 17239 17883 D identified by match to protein family HMM PF01051; truncated replication protein 17239..17883 Staphylococcus epidermidis RP62A 3239137 YP_187552.1 CDS SEA0023 NC_006663.1 19178 19591 R identified by match to protein family HMM PF00582; universal stress protein complement(19178..19591) Staphylococcus epidermidis RP62A 3239136 YP_187553.1 CDS SEA0024 NC_006663.1 19605 21056 R identified by match to protein family HMM PF00916; sulfate permease family protein complement(19605..21056) Staphylococcus epidermidis RP62A 3239162 YP_187554.1 CDS SEA0025 NC_006663.1 21170 21712 D identified by similarity to GP:14475518; match to protein family HMM PF00239; resolvase, putative 21170..21712 Staphylococcus epidermidis RP62A 3239160 YP_187555.1 CDS SEA0026 NC_006663.1 21798 22031 R hypothetical protein complement(21798..22031) Staphylococcus epidermidis RP62A 3239159 YP_187556.1 CDS SEA0027 NC_006663.1 22328 22723 D identified by match to protein family HMM PF05713; mobilization protein 22328..22723 Staphylococcus epidermidis RP62A 3239158 YP_187557.1 CDS SEA0028 NC_006663.1 22705 22905 D hypothetical protein 22705..22905 Staphylococcus epidermidis RP62A 3239157 YP_187558.1 CDS SEA0029 NC_006663.1 22883 23899 D identified by similarity to EGAD:5979; match to protein family HMM PF03432; rlx protein, putative 22883..23899 Staphylococcus epidermidis RP62A 3239155 YP_187559.1 CDS SEA0030 NC_006663.1 23601 24407 D mobilization protein 23601..24407 Staphylococcus epidermidis RP62A 3239152 YP_187560.1 CDS SEA0031 NC_006663.1 24376 24567 D hypothetical protein 24376..24567 Staphylococcus epidermidis RP62A 3239147 YP_187561.1 CDS repA NC_006663.1 26046 27080 R identified by similarity to EGAD:40155; replication-associated protein RepA complement(26046..27080) Staphylococcus epidermidis RP62A 3239132 SERP_tRNA-Ser-1 tRNA SERP_tRNA-Ser-1 NC_002976.3 98388 98480 D tRNA-Ser 98388..98480 Staphylococcus epidermidis RP62A 3241676 SERP_tRNA-Val-1 tRNA SERP_tRNA-Val-1 NC_002976.3 149549 149624 D tRNA-Val 149549..149624 Staphylococcus epidermidis RP62A 3241688 SERP_tRNA-Thr-1 tRNA SERP_tRNA-Thr-1 NC_002976.3 149631 149706 D tRNA-Thr 149631..149706 Staphylococcus epidermidis RP62A 3241681 SERP_tRNA-Lys-1 tRNA SERP_tRNA-Lys-1 NC_002976.3 149713 149785 D tRNA-Lys 149713..149785 Staphylococcus epidermidis RP62A 3242195 SERP_tRNA-Gly-1 tRNA SERP_tRNA-Gly-1 NC_002976.3 149804 149878 D tRNA-Gly 149804..149878 Staphylococcus epidermidis RP62A 3242207 SERP_tRNA-Leu-1 tRNA SERP_tRNA-Leu-1 NC_002976.3 149890 149978 D tRNA-Leu 149890..149978 Staphylococcus epidermidis RP62A 3242190 SERP_tRNA-Arg-1 tRNA SERP_tRNA-Arg-1 NC_002976.3 149991 150067 D tRNA-Arg 149991..150067 Staphylococcus epidermidis RP62A 3242180 SERP_tRNA-Pro-1 tRNA SERP_tRNA-Pro-1 NC_002976.3 150094 150167 D tRNA-Pro 150094..150167 Staphylococcus epidermidis RP62A 3241672 SERP_tRNA-Ala-1 tRNA SERP_tRNA-Ala-1 NC_002976.3 150182 150257 D tRNA-Ala 150182..150257 Staphylococcus epidermidis RP62A 3242177 SERP_tRNA-Ile-1 tRNA SERP_tRNA-Ile-1 NC_002976.3 157175 157251 D tRNA-Ile 157175..157251 Staphylococcus epidermidis RP62A 3242176 SERP_tRNA-Arg-2 tRNA SERP_tRNA-Arg-2 NC_002976.3 440931 441002 R tRNA-Arg complement(440931..441002) Staphylococcus epidermidis RP62A 3242181 SERP_tRNA-Asn-1 tRNA SERP_tRNA-Asn-1 NC_002976.3 612868 612942 D tRNA-Asn 612868..612942 Staphylococcus epidermidis RP62A 3242184 SERP_tRNA-Ser-2 tRNA SERP_tRNA-Ser-2 NC_002976.3 612946 613034 D tRNA-Ser 612946..613034 Staphylococcus epidermidis RP62A 3241677 SERP_tRNA-Arg-3 tRNA SERP_tRNA-Arg-3 NC_002976.3 735720 735796 R tRNA-Arg complement(735720..735796) Staphylococcus epidermidis RP62A 3242182 SERP_tRNA-Ser-3 tRNA SERP_tRNA-Ser-3 NC_002976.3 1420778 1420866 R tRNA-Ser complement(1420778..1420866) Staphylococcus epidermidis RP62A 3241678 SERP_tRNA-Glu-1 tRNA SERP_tRNA-Glu-1 NC_002976.3 1420920 1420991 R tRNA-Glu complement(1420920..1420991) Staphylococcus epidermidis RP62A 3242204 SERP_tRNA-Asn-2 tRNA SERP_tRNA-Asn-2 NC_002976.3 1420993 1421067 R tRNA-Asn complement(1420993..1421067) Staphylococcus epidermidis RP62A 3242185 SERP_tRNA-Gly-2 tRNA SERP_tRNA-Gly-2 NC_002976.3 1421077 1421150 R tRNA-Gly complement(1421077..1421150) Staphylococcus epidermidis RP62A 3241666 SERP_tRNA-His-1 tRNA SERP_tRNA-His-1 NC_002976.3 1421168 1421243 R tRNA-His complement(1421168..1421243) Staphylococcus epidermidis RP62A 3242174 SERP_tRNA-Phe-1 tRNA SERP_tRNA-Phe-1 NC_002976.3 1421257 1421329 R tRNA-Phe complement(1421257..1421329) Staphylococcus epidermidis RP62A 3241670 SERP_tRNA-Asp-1 tRNA SERP_tRNA-Asp-1 NC_002976.3 1421340 1421415 R tRNA-Asp complement(1421340..1421415) Staphylococcus epidermidis RP62A 3242187 SERP_tRNA-Met-1 tRNA SERP_tRNA-Met-1 NC_002976.3 1421430 1421503 R tRNA-Met complement(1421430..1421503) Staphylococcus epidermidis RP62A 3242198 SERP_tRNA-Leu-2 tRNA SERP_tRNA-Leu-2 NC_002976.3 1454736 1454819 R tRNA-Leu complement(1454736..1454819) Staphylococcus epidermidis RP62A 3242191 SERP_tRNA-Gly-3 tRNA SERP_tRNA-Gly-3 NC_002976.3 1454946 1455020 R tRNA-Gly complement(1454946..1455020) Staphylococcus epidermidis RP62A 3241667 SERP_tRNA-Cys-1 tRNA SERP_tRNA-Cys-1 NC_002976.3 1455119 1455192 R tRNA-Cys complement(1455119..1455192) Staphylococcus epidermidis RP62A 3242201 SERP_tRNA-Gln-1 tRNA SERP_tRNA-Gln-1 NC_002976.3 1455198 1455269 R tRNA-Gln complement(1455198..1455269) Staphylococcus epidermidis RP62A 3242202 SERP_tRNA-His-2 tRNA SERP_tRNA-His-2 NC_002976.3 1455281 1455353 R tRNA-His complement(1455281..1455353) Staphylococcus epidermidis RP62A 3242175 SERP_tRNA-Trp-1 tRNA SERP_tRNA-Trp-1 NC_002976.3 1455356 1455429 R tRNA-Trp complement(1455356..1455429) Staphylococcus epidermidis RP62A 3241685 SERP_tRNA-Tyr-1 tRNA SERP_tRNA-Tyr-1 NC_002976.3 1455438 1455521 R tRNA-Tyr complement(1455438..1455521) Staphylococcus epidermidis RP62A 3241686 SERP_tRNA-Thr-2 tRNA SERP_tRNA-Thr-2 NC_002976.3 1455526 1455601 R tRNA-Thr complement(1455526..1455601) Staphylococcus epidermidis RP62A 3241682 SERP_tRNA-Phe-2 tRNA SERP_tRNA-Phe-2 NC_002976.3 1455610 1455682 R tRNA-Phe complement(1455610..1455682) Staphylococcus epidermidis RP62A 3241671 SERP_tRNA-Met-2 tRNA SERP_tRNA-Met-2 NC_002976.3 1455787 1455860 R tRNA-Met complement(1455787..1455860) Staphylococcus epidermidis RP62A 3242199 SERP_tRNA-Ser-4 tRNA SERP_tRNA-Ser-4 NC_002976.3 1455872 1455964 R tRNA-Ser complement(1455872..1455964) Staphylococcus epidermidis RP62A 3241679 SERP_tRNA-Asp-2 tRNA SERP_tRNA-Asp-2 NC_002976.3 1456002 1456077 R tRNA-Asp complement(1456002..1456077) Staphylococcus epidermidis RP62A 3242188 SERP_tRNA-Ser-5 tRNA SERP_tRNA-Ser-5 NC_002976.3 1456085 1456174 R tRNA-Ser complement(1456085..1456174) Staphylococcus epidermidis RP62A 3241680 SERP_tRNA-Met-3 tRNA SERP_tRNA-Met-3 NC_002976.3 1456184 1456257 R tRNA-Met complement(1456184..1456257) Staphylococcus epidermidis RP62A 3241668 SERP_tRNA-Met-4 tRNA SERP_tRNA-Met-4 NC_002976.3 1456282 1456358 R tRNA-Met complement(1456282..1456358) Staphylococcus epidermidis RP62A 3241669 SERP_tRNA-Ala-2 tRNA SERP_tRNA-Ala-2 NC_002976.3 1456383 1456458 R tRNA-Ala complement(1456383..1456458) Staphylococcus epidermidis RP62A 3242178 SERP_tRNA-Pro-2 tRNA SERP_tRNA-Pro-2 NC_002976.3 1456475 1456548 R tRNA-Pro complement(1456475..1456548) Staphylococcus epidermidis RP62A 3241673 SERP_tRNA-Arg-4 tRNA SERP_tRNA-Arg-4 NC_002976.3 1456558 1456631 R tRNA-Arg complement(1456558..1456631) Staphylococcus epidermidis RP62A 3242183 SERP_tRNA-Leu-3 tRNA SERP_tRNA-Leu-3 NC_002976.3 1456644 1456732 R tRNA-Leu complement(1456644..1456732) Staphylococcus epidermidis RP62A 3242192 SERP_tRNA-Gly-4 tRNA SERP_tRNA-Gly-4 NC_002976.3 1456744 1456818 R tRNA-Gly complement(1456744..1456818) Staphylococcus epidermidis RP62A 3240470 SERP_tRNA-Leu-4 tRNA SERP_tRNA-Leu-4 NC_002976.3 1456822 1456904 R tRNA-Leu complement(1456822..1456904) Staphylococcus epidermidis RP62A 3242193 SERP_tRNA-Lys-2 tRNA SERP_tRNA-Lys-2 NC_002976.3 1456913 1456988 R tRNA-Lys complement(1456913..1456988) Staphylococcus epidermidis RP62A 3242196 SERP_tRNA-Thr-3 tRNA SERP_tRNA-Thr-3 NC_002976.3 1456995 1457070 R tRNA-Thr complement(1456995..1457070) Staphylococcus epidermidis RP62A 3241683 SERP_tRNA-Val-2 tRNA SERP_tRNA-Val-2 NC_002976.3 1457077 1457152 R tRNA-Val complement(1457077..1457152) Staphylococcus epidermidis RP62A 3241689 SERP_tRNA-Ala-3 tRNA SERP_tRNA-Ala-3 NC_002976.3 1460455 1460530 R tRNA-Ala complement(1460455..1460530) Staphylococcus epidermidis RP62A 3242179 SERP_tRNA-Ile-2 tRNA SERP_tRNA-Ile-2 NC_002976.3 1460551 1460627 R tRNA-Ile complement(1460551..1460627) Staphylococcus epidermidis RP62A 3242189 SERP_tRNA-Gly-5 tRNA SERP_tRNA-Gly-5 NC_002976.3 1718979 1719052 R tRNA-Gly complement(1718979..1719052) Staphylococcus epidermidis RP62A 3240471 SERP_tRNA-Leu-5 tRNA SERP_tRNA-Leu-5 NC_002976.3 1719075 1719161 R tRNA-Leu complement(1719075..1719161) Staphylococcus epidermidis RP62A 3242194 SERP_tRNA-Lys-3 tRNA SERP_tRNA-Lys-3 NC_002976.3 1802766 1802838 R tRNA-Lys complement(1802766..1802838) Staphylococcus epidermidis RP62A 3242197 SERP_tRNA-Gln-2 tRNA SERP_tRNA-Gln-2 NC_002976.3 1802842 1802916 R tRNA-Gln complement(1802842..1802916) Staphylococcus epidermidis RP62A 3242203 SERP_tRNA-Tyr-2 tRNA SERP_tRNA-Tyr-2 NC_002976.3 1802921 1803004 R tRNA-Tyr complement(1802921..1803004) Staphylococcus epidermidis RP62A 3241687 SERP_tRNA-Val-3 tRNA SERP_tRNA-Val-3 NC_002976.3 1803021 1803096 R tRNA-Val complement(1803021..1803096) Staphylococcus epidermidis RP62A 3241690 SERP_tRNA-Glu-2 tRNA SERP_tRNA-Glu-2 NC_002976.3 1803103 1803174 R tRNA-Glu complement(1803103..1803174) Staphylococcus epidermidis RP62A 3242205 SERP_tRNA-Asn-3 tRNA SERP_tRNA-Asn-3 NC_002976.3 1803176 1803250 R tRNA-Asn complement(1803176..1803250) Staphylococcus epidermidis RP62A 3242186 SERP_tRNA-Thr-4 tRNA SERP_tRNA-Thr-4 NC_002976.3 2332647 2332739 D tRNA-Thr 2332647..2332739 Staphylococcus epidermidis RP62A 3241684 SERP_tRNA-Asp-3 tRNA SERP_tRNA-Asp-3 NC_002976.3 2592263 2592335 R tRNA-Asp complement(2592263..2592335) Staphylococcus epidermidis RP62A 3242200 SERP_tRNA-Glu-3 tRNA SERP_tRNA-Glu-3 NC_002976.3 2592341 2592415 R tRNA-Glu complement(2592341..2592415) Staphylococcus epidermidis RP62A 3242206 SERP_Se16SA rRNA rrsA NC_002976.3 105734 107287 D 16S ribosomal RNA 105734..107287 Staphylococcus epidermidis RP62A 3240448 SERP_Se23SA rRNA rrlA NC_002976.3 107551 110472 D 23S ribosomal RNA 107551..110472 Staphylococcus epidermidis RP62A 3240454 SERP_Se5SA rRNA rrfA NC_002976.3 110543 110657 D 5S ribosomal RNA 110543..110657 Staphylococcus epidermidis RP62A 3240460 SERP_Se5SG rRNA rrfG NC_002976.3 149424 149538 D 1 ribosomal RNA 149424..149538 Staphylococcus epidermidis RP62A 3240466 SERP_Se16SB rRNA rrsB NC_002976.3 150374 151927 D 16S ribosomal RNA 150374..151927 Staphylococcus epidermidis RP62A 3240449 SERP_Se23SB rRNA rrlB NC_002976.3 152191 155112 D 23S ribosomal RNA 152191..155112 Staphylococcus epidermidis RP62A 3240455 SERP_Se5SB rRNA rrfB NC_002976.3 155183 155297 D 5S ribosomal RNA 155183..155297 Staphylococcus epidermidis RP62A 3240461 SERP_Se16SC rRNA rrsC NC_002976.3 155526 157079 D 16S ribosomal RNA 155526..157079 Staphylococcus epidermidis RP62A 3240450 SERP_Se23SC rRNA rrlC NC_002976.3 157435 160356 D 23S ribosomal RNA 157435..160356 Staphylococcus epidermidis RP62A 3240456 SERP_Se5SC rRNA rrfC NC_002976.3 160427 160541 D 5S ribosomal RNA 160427..160541 Staphylococcus epidermidis RP62A 3240462 SERP_Se5SD rRNA rrfD NC_002976.3 1457163 1457277 R 5S ribosomal RNA complement(1457163..1457277) Staphylococcus epidermidis RP62A 3240463 SERP_Se23SD rRNA rrlD NC_002976.3 1457348 1460269 R 23S ribosomal RNA complement(1457348..1460269) Staphylococcus epidermidis RP62A 3240457 SERP_Se16SD rRNA rrsD NC_002976.3 1460720 1462273 R 16S ribosomal RNA complement(1460720..1462273) Staphylococcus epidermidis RP62A 3240451 SERP_Se5SE rRNA rrfE NC_002976.3 1713943 1714057 R 5S ribosomal RNA complement(1713943..1714057) Staphylococcus epidermidis RP62A 3240464 SERP_Se23SE rRNA rrlE NC_002976.3 1714128 1717049 R 23S ribosomal RNA complement(1714128..1717049) Staphylococcus epidermidis RP62A 3240458 SERP_Se16SE rRNA rrsE NC_002976.3 1717312 1718865 R 16S ribosomal RNA complement(1717312..1718865) Staphylococcus epidermidis RP62A 3240452 SERP_Se5SF rRNA rrfF NC_002976.3 1803264 1803378 R 5S ribosomal RNA complement(1803264..1803378) Staphylococcus epidermidis RP62A 3240465 SERP_Se23SF rRNA rrlF NC_002976.3 1803449 1806370 R 23S ribosomal RNA complement(1803449..1806370) Staphylococcus epidermidis RP62A 3240459 SERP_Se16SF rRNA rrsF NC_002976.3 1806632 1808185 R 16S ribosomal RNA complement(1806632..1808185) Staphylococcus epidermidis RP62A 3240453