-- dump date 20140620_080734 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002026389.1 194363779 6474940 215..1546 1 NC_011071.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1546 dnaA 6474940 dnaA Stenotrophomonas maltophilia R551-3 chromosomal replication initiation protein YP_002026389.1 215 D 391008 CDS YP_002026390.1 194363780 6477478 1823..2923 1 NC_011071.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2923 6477478 Smal_0002 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit beta YP_002026390.1 1823 D 391008 CDS YP_002026391.1 194363781 6477479 3921..5015 1 NC_011071.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 5015 recF 6477479 recF Stenotrophomonas maltophilia R551-3 recombination protein F YP_002026391.1 3921 D 391008 CDS YP_002026392.1 194363782 6477480 5128..7587 1 NC_011071.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7587 gyrB 6477480 gyrB Stenotrophomonas maltophilia R551-3 DNA gyrase subunit B YP_002026392.1 5128 D 391008 CDS YP_002026393.1 194363783 6477481 7655..8500 1 NC_011071.1 PFAM: Abortive infection protein; KEGG: xcb:XC_0005 hypothetical protein; abortive infection protein 8500 6477481 Smal_0005 Stenotrophomonas maltophilia R551-3 abortive infection protein YP_002026393.1 7655 D 391008 CDS YP_002026394.1 194363784 6477482 8572..9378 1 NC_011071.1 PFAM: peptidase M48 Ste24p; KEGG: xac:XAC0006 hypothetical protein; peptidase M48 Ste24p 9378 6477482 Smal_0006 Stenotrophomonas maltophilia R551-3 peptidase M48 Ste24p YP_002026394.1 8572 D 391008 CDS YP_002026395.1 194363785 6477483 9511..10698 1 NC_011071.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0007 hypothetical protein; hypothetical protein 10698 6477483 Smal_0007 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026395.1 9511 D 391008 CDS YP_002026396.1 194363786 6477484 10842..11510 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC0008 TonB protein; TonB family protein 11510 6477484 Smal_0008 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002026396.1 10842 D 391008 CDS YP_002026397.1 194363787 6477485 11606..12367 1 NC_011071.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC0009 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel 12367 6477485 Smal_0009 Stenotrophomonas maltophilia R551-3 MotA/TolQ/ExbB proton channel YP_002026397.1 11606 D 391008 CDS YP_002026398.1 194363788 6477486 12428..12853 1 NC_011071.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcb:XC_0010 biopolymer transport ExbD1 protein; biopolymer transport protein ExbD/TolR 12853 6477486 Smal_0010 Stenotrophomonas maltophilia R551-3 biopolymer transport protein ExbD/TolR YP_002026398.1 12428 D 391008 CDS YP_002026399.1 194363789 6477487 12857..13270 1 NC_011071.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xom:XOO_0011 biopolymer transport ExbD2 protein; biopolymer transport protein ExbD/TolR 13270 6477487 Smal_0011 Stenotrophomonas maltophilia R551-3 biopolymer transport protein ExbD/TolR YP_002026399.1 12857 D 391008 CDS YP_002026400.1 194363790 6477488 13421..14881 1 NC_011071.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: xcv:XCV0015 cardiolipin synthetase; phospholipase D/transphosphatidylase 14881 6477488 Smal_0012 Stenotrophomonas maltophilia R551-3 phospholipase D/transphosphatidylase YP_002026400.1 13421 D 391008 CDS YP_002026401.1 194363791 6477489 14922..15191 1 NC_011071.1 KEGG: xcv:XCV0014 hypothetical protein; hypothetical protein 15191 6477489 Smal_0013 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026401.1 14922 D 391008 CDS YP_002026402.1 194363792 6477490 15201..15944 1 NC_011071.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 15944 6477490 Smal_0014 Stenotrophomonas maltophilia R551-3 pyridoxine 5'-phosphate synthase YP_002026402.1 15201 D 391008 CDS YP_002026403.1 194363793 6477491 16088..17179 1 NC_011071.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: xcc:XCC0015 hypothetical protein; radical SAM protein 17179 6477491 Smal_0015 Stenotrophomonas maltophilia R551-3 radical SAM protein YP_002026403.1 16088 D 391008 CDS YP_002026404.1 194363794 6477492 17350..20574 1 NC_011071.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: xac:XAC1305 wall-associated protein; YD repeat-containing protein 20574 6477492 Smal_0016 Stenotrophomonas maltophilia R551-3 YD repeat-containing protein YP_002026404.1 17350 D 391008 CDS YP_002026405.1 194363795 6477493 20769..22985 1 NC_011071.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sdn:Sden_2443 YD repeat; YD repeat-containing protein 22985 6477493 Smal_0017 Stenotrophomonas maltophilia R551-3 YD repeat-containing protein YP_002026405.1 20769 D 391008 CDS YP_002026406.1 194363796 6477494 22991..23173 1 NC_011071.1 hypothetical protein 23173 6477494 Smal_0018 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026406.1 22991 D 391008 CDS YP_002026407.1 194363797 6477495 complement(23234..23941) 1 NC_011071.1 KEGG: xac:XAC0018 hypothetical protein; hypothetical protein 23941 6477495 Smal_0019 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026407.1 23234 R 391008 CDS YP_002026408.1 194363798 6477496 complement(24049..25065) 1 NC_011071.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 25065 6477496 Smal_0020 Stenotrophomonas maltophilia R551-3 fructose-1,6-bisphosphatase YP_002026408.1 24049 R 391008 CDS YP_002026409.1 194363799 6477497 complement(25398..26600) 1 NC_011071.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 26600 6477497 Smal_0021 Stenotrophomonas maltophilia R551-3 aromatic amino acid aminotransferase YP_002026409.1 25398 R 391008 CDS YP_002026410.1 194363800 6477498 26772..28865 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0101 iron transporter; TonB-dependent receptor 28865 6477498 Smal_0022 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026410.1 26772 D 391008 CDS YP_002026411.1 194363801 6477499 complement(29094..29438) 1 NC_011071.1 KEGG: xcb:XC_3775 hypothetical protein; hypothetical protein 29438 6477499 Smal_0023 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026411.1 29094 R 391008 CDS YP_002026412.1 194363802 6477500 29586..29984 1 NC_011071.1 KEGG: xcv:XCV0108 hypothetical protein; hypothetical protein 29984 6477500 Smal_0024 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026412.1 29586 D 391008 CDS YP_002026413.1 194363803 6477501 30139..31044 1 NC_011071.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: xcb:XC_0108 hypothetical protein; Ku protein 31044 6477501 Smal_0025 Stenotrophomonas maltophilia R551-3 Ku protein YP_002026413.1 30139 D 391008 CDS YP_002026414.1 194363804 6477502 31048..33525 1 NC_011071.1 TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xcb:XC_1808 ATP-dependent DNA ligase; DNA ligase D 33525 6477502 Smal_0026 Stenotrophomonas maltophilia R551-3 DNA ligase D YP_002026414.1 31048 D 391008 CDS YP_002026415.1 194363805 6477503 complement(33597..33989) 1 NC_011071.1 hypothetical protein 33989 6477503 Smal_0027 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026415.1 33597 R 391008 CDS YP_002026416.1 194363806 6477504 complement(34147..35175) 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_2868 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein 35175 6477504 Smal_0028 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase GroES domain-containing protein YP_002026416.1 34147 R 391008 CDS YP_002026417.1 194363807 6477505 complement(35272..35910) 1 NC_011071.1 KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 35910 6477505 Smal_0029 Stenotrophomonas maltophilia R551-3 2-dehydro-3-deoxyphosphogluconate aldolase YP_002026417.1 35272 R 391008 CDS YP_002026418.1 194363808 6477506 complement(36026..36682) 1 NC_011071.1 PFAM: cysteine dioxygenase type I; KEGG: bwe:BcerKBAB4_2507 cysteine dioxygenase type I; cysteine dioxygenase type I 36682 6477506 Smal_0030 Stenotrophomonas maltophilia R551-3 cysteine dioxygenase type I YP_002026418.1 36026 R 391008 CDS YP_002026419.1 194363809 6477507 36856..37911 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcv:XCV0151 transcriptional regulator, LacI family; LacI family transcriptional regulator 37911 6477507 Smal_0031 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002026419.1 36856 D 391008 CDS YP_002026420.1 194363810 6477508 complement(38010..38903) 1 NC_011071.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 38903 phhA 6477508 phhA Stenotrophomonas maltophilia R551-3 phenylalanine 4-monooxygenase YP_002026420.1 38010 R 391008 CDS YP_002026421.1 194363811 6477509 39029..39514 1 NC_011071.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: xac:XAC0175 transcriptional regulator AsnC family; AsnC family transcriptional regulator 39514 6477509 Smal_0033 Stenotrophomonas maltophilia R551-3 AsnC family transcriptional regulator YP_002026421.1 39029 D 391008 CDS YP_002026422.1 194363812 6477510 39662..40405 1 NC_011071.1 hypothetical protein 40405 6477510 Smal_0034 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026422.1 39662 D 391008 CDS YP_002026423.1 194363813 6477511 complement(40452..41444) 1 NC_011071.1 PFAM: Patatin; KEGG: xcb:XC_0168 hypothetical protein; patatin 41444 6477511 Smal_0035 Stenotrophomonas maltophilia R551-3 patatin YP_002026423.1 40452 R 391008 CDS YP_002026424.1 194363814 6477512 complement(41729..42745) 1 NC_011071.1 PFAM: protein of unknown function DUF124; KEGG: xac:XAC0178 hypothetical protein; hypothetical protein 42745 6477512 Smal_0036 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026424.1 41729 R 391008 CDS YP_002026425.1 194363815 6477513 42905..45178 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC1143 TonB-dependent receptor; TonB-dependent receptor 45178 6477513 Smal_0037 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026425.1 42905 D 391008 CDS YP_002026426.1 194363816 6477514 complement(45291..46130) 1 NC_011071.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: xom:XOO_4367 phosphatase precursor; acid phosphatase 46130 6477514 Smal_0038 Stenotrophomonas maltophilia R551-3 acid phosphatase YP_002026426.1 45291 R 391008 CDS YP_002026427.1 194363817 6477515 46392..47270 1 NC_011071.1 KEGG: spc:Sputcn32_1417 hypothetical protein; hypothetical protein 47270 6477515 Smal_0039 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026427.1 46392 D 391008 CDS YP_002026428.1 194363818 6477516 47282..48484 1 NC_011071.1 KEGG: slo:Shew_3564 hypothetical protein; hypothetical protein 48484 6477516 Smal_0040 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026428.1 47282 D 391008 CDS YP_002026429.1 194363819 6477517 complement(48628..49479) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC0179 ABC transporter ATP-binding protein; ABC transporter-like protein 49479 6477517 Smal_0041 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026429.1 48628 R 391008 CDS YP_002026430.1 194363820 6477518 49601..50803 1 NC_011071.1 PFAM: fatty acid desaturase; KEGG: xac:XAC0180 fatty acid desaturase; fatty acid desaturase 50803 6477518 Smal_0042 Stenotrophomonas maltophilia R551-3 fatty acid desaturase YP_002026430.1 49601 D 391008 CDS YP_002026431.1 194363821 6477592 50800..51132 1 NC_011071.1 KEGG: xom:XOO_4252 hypothetical protein; hypothetical protein 51132 6477592 Smal_0043 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026431.1 50800 D 391008 CDS YP_002026432.1 194363822 6477593 51363..52145 1 NC_011071.1 KEGG: xac:XAC3635 hypothetical protein; hypothetical protein 52145 6477593 Smal_0044 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026432.1 51363 D 391008 CDS YP_002026433.1 194363823 6477594 52216..53028 1 NC_011071.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 53028 6477594 Smal_0045 Stenotrophomonas maltophilia R551-3 formamidopyrimidine-DNA glycosylase YP_002026433.1 52216 D 391008 CDS YP_002026434.1 194363824 6477595 53134..54738 1 NC_011071.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 54738 mdoD 6477595 mdoD Stenotrophomonas maltophilia R551-3 glucan biosynthesis protein D YP_002026434.1 53134 D 391008 CDS YP_002026435.1 194363825 6477596 complement(55261..55881) 1 NC_011071.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 55881 6477596 Smal_0047 Stenotrophomonas maltophilia R551-3 thymidine kinase YP_002026435.1 55261 R 391008 CDS YP_002026436.1 194363826 6477597 complement(55891..56619) 1 NC_011071.1 KEGG: sfu:Sfum_0326 Sel1 domain protein repeat-containing protein; hypothetical protein 56619 6477597 Smal_0048 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026436.1 55891 R 391008 CDS YP_002026437.1 194363827 6477598 complement(56655..57383) 1 NC_011071.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: xac:XAC2943 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 57383 6477598 Smal_0049 Stenotrophomonas maltophilia R551-3 Sel1 domain-containing protein repeat-containing protein YP_002026437.1 56655 R 391008 CDS YP_002026438.1 194363828 6477599 57483..59459 1 NC_011071.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: xcb:XC_4231 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep 59459 6477599 Smal_0050 Stenotrophomonas maltophilia R551-3 ATP-dependent DNA helicase Rep YP_002026438.1 57483 D 391008 CDS YP_002026439.1 194363829 6477600 59721..60248 1 NC_011071.1 KEGG: xac:XAC4280 acetyltransferase; acetyltransferase 60248 6477600 Smal_0051 Stenotrophomonas maltophilia R551-3 acetyltransferase YP_002026439.1 59721 D 391008 CDS YP_002026440.1 194363830 6477601 complement(60347..60997) 1 NC_011071.1 PFAM: protein of unknown function DUF480; KEGG: xcv:XCV4380 hypothetical protein; hypothetical protein 60997 6477601 Smal_0052 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026440.1 60347 R 391008 CDS YP_002026441.1 194363831 6477602 61099..62022 1 NC_011071.1 TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: xcb:XC_4227 acid phosphatase; 5'-nucleotidase 62022 6477602 Smal_0053 Stenotrophomonas maltophilia R551-3 5'-nucleotidase YP_002026441.1 61099 D 391008 CDS YP_002026442.1 194363832 6477603 62019..62744 1 NC_011071.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 62744 6477603 Smal_0054 Stenotrophomonas maltophilia R551-3 orotidine 5'-phosphate decarboxylase YP_002026442.1 62019 D 391008 CDS YP_002026443.1 194363833 6477604 63143..64096 1 NC_011071.1 KEGG: xcb:XC_4221 hypothetical protein; hypothetical protein 64096 6477604 Smal_0055 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026443.1 63143 D 391008 CDS YP_002026444.1 194363834 6477605 64096..66732 1 NC_011071.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 66732 6477605 Smal_0056 Stenotrophomonas maltophilia R551-3 glycerol-3-phosphate acyltransferase YP_002026444.1 64096 D 391008 CDS YP_002026445.1 194363835 6477606 complement(66823..67026) 1 NC_011071.1 KEGG: xcb:XC_4218 hypothetical protein; hypothetical protein 67026 6477606 Smal_0057 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026445.1 66823 R 391008 CDS YP_002026446.1 194363836 6477607 67117..68013 1 NC_011071.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 68013 6477607 Smal_0058 Stenotrophomonas maltophilia R551-3 C32 tRNA thiolase YP_002026446.1 67117 D 391008 CDS YP_002026447.1 194363837 6477608 68050..68955 1 NC_011071.1 Required for efficient pilin antigenic variation; recombination associated protein 68955 rdgC 6477608 rdgC Stenotrophomonas maltophilia R551-3 recombination associated protein YP_002026447.1 68050 D 391008 CDS YP_002026448.1 194363838 6477609 69015..69794 1 NC_011071.1 PFAM: protein of unknown function DUF45; KEGG: xcb:XC_4188 hypothetical protein; hypothetical protein 69794 6477609 Smal_0060 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026448.1 69015 D 391008 CDS YP_002026449.1 194363839 6477610 complement(70087..70953) 1 NC_011071.1 KEGG: dac:Daci_5146 hypothetical protein; hypothetical protein 70953 6477610 Smal_0061 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026449.1 70087 R 391008 CDS YP_002026450.1 194363840 6477611 71106..73529 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: reu:Reut_B4471 PAS/PAC sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 73529 6477611 Smal_0062 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002026450.1 71106 D 391008 CDS YP_002026451.1 194363841 6477612 complement(73515..74960) 1 NC_011071.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 74960 gltD 6477612 gltD Stenotrophomonas maltophilia R551-3 glutamate synthase subunit beta YP_002026451.1 73515 R 391008 CDS YP_002026452.1 194363842 6477613 complement(75046..79500) 1 NC_011071.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 79500 gltB 6477613 gltB Stenotrophomonas maltophilia R551-3 glutamate synthase subunit alpha YP_002026452.1 75046 R 391008 CDS YP_002026453.1 194363843 6477614 complement(79676..80065) 1 NC_011071.1 KEGG: xac:XAC0034 hypothetical protein; hypothetical protein 80065 6477614 Smal_0065 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026453.1 79676 R 391008 CDS YP_002026454.1 194363844 6477615 80177..81235 1 NC_011071.1 KEGG: xcb:XC_0034 hypothetical protein; hypothetical protein 81235 6477615 Smal_0066 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026454.1 80177 D 391008 CDS YP_002026455.1 194363845 6477616 complement(81223..81531) 1 NC_011071.1 KEGG: xom:XOO_0154 hypothetical protein; hypothetical protein 81531 6477616 Smal_0067 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026455.1 81223 R 391008 CDS YP_002026456.1 194363846 6477617 81748..82854 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 82854 6477617 Smal_0068 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002026456.1 81748 D 391008 CDS YP_002026457.1 194363847 6477618 82974..84389 1 NC_011071.1 KEGG: xcv:XCV1185 hypothetical protein; hypothetical protein 84389 6477618 Smal_0069 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026457.1 82974 D 391008 CDS YP_002026458.1 194363848 6477619 84390..85193 1 NC_011071.1 KEGG: xac:XAC1162 hypothetical protein; hypothetical protein 85193 6477619 Smal_0070 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026458.1 84390 D 391008 CDS YP_002026459.1 194363849 6477620 complement(85128..86249) 1 NC_011071.1 PFAM: beta-lactamase; KEGG: fjo:Fjoh_3817 beta-lactamase; beta-lactamase 86249 6477620 Smal_0071 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002026459.1 85128 R 391008 CDS YP_002026460.1 194363850 6477621 complement(86394..87341) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csa:Csal_2540 transcriptional regulator, AraC family; AraC family transcriptional regulator 87341 6477621 Smal_0072 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002026460.1 86394 R 391008 CDS YP_002026461.1 194363851 6477622 87475..87861 1 NC_011071.1 KEGG: fph:Fphi_0921 hypothetical protein; hypothetical protein 87861 6477622 Smal_0073 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026461.1 87475 D 391008 CDS YP_002026462.1 194363852 6477623 87851..89071 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: fph:Fphi_0920 putative transmembrane transport protein; major facilitator superfamily protein 89071 6477623 Smal_0074 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026462.1 87851 D 391008 CDS YP_002026463.1 194363853 6477624 89089..91344 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD2116 putative ferric siderophore receptor protein; TonB-dependent receptor 91344 6477624 Smal_0075 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026463.1 89089 D 391008 CDS YP_002026464.1 194363854 6477625 91452..91838 1 NC_011071.1 PFAM: Penicillinase repressor; KEGG: xac:XAC0069 methicillin resistance protein; CopY family transcriptional repressor 91838 6477625 Smal_0076 Stenotrophomonas maltophilia R551-3 CopY family transcriptional repressor YP_002026464.1 91452 D 391008 CDS YP_002026465.1 194363855 6477626 91842..93836 1 NC_011071.1 PFAM: peptidase M56 BlaR1; KEGG: xcv:XCV0046 BlaR1 peptidase M56 family membrane protein; peptidase M56 BlaR1 93836 6477626 Smal_0077 Stenotrophomonas maltophilia R551-3 peptidase M56 BlaR1 YP_002026465.1 91842 D 391008 CDS YP_002026466.1 194363856 6477627 complement(93930..94244) 1 NC_011071.1 KEGG: pap:PSPA7_3327 lipoprotein, putative; lipoprotein 94244 6477627 Smal_0078 Stenotrophomonas maltophilia R551-3 lipoprotein YP_002026466.1 93930 R 391008 CDS YP_002026467.1 194363857 6477628 complement(94311..95333) 1 NC_011071.1 KEGG: xcb:XC_0053 hypothetical protein; hypothetical protein 95333 6477628 Smal_0079 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026467.1 94311 R 391008 CDS YP_002026468.1 194363858 6477629 complement(95330..97819) 1 NC_011071.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: xom:XOO_0145 ATP-dependent RNA helicase; DEAD/DEAH box helicase 97819 6477629 Smal_0080 Stenotrophomonas maltophilia R551-3 DEAD/DEAH box helicase YP_002026468.1 95330 R 391008 CDS YP_002026469.1 194363859 6477630 98032..98550 1 NC_011071.1 KEGG: mcc:718526 regulatory factor X, 1 (influences HLA class II expression); hypothetical protein 98550 6477630 Smal_0081 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026469.1 98032 D 391008 CDS YP_002026470.1 194363860 6477631 98590..99264 1 NC_011071.1 KEGG: xcb:XC_0139 hypothetical protein; hypothetical protein 99264 6477631 Smal_0082 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026470.1 98590 D 391008 CDS YP_002026471.1 194363861 6477632 complement(99364..101172) 1 NC_011071.1 KEGG: xcb:XC_0088 hypothetical protein; hypothetical protein 101172 6477632 Smal_0083 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026471.1 99364 R 391008 CDS YP_002026472.1 194363862 6477633 complement(101169..103355) 1 NC_011071.1 KEGG: xcb:XC_0089 hypothetical protein; hypothetical protein 103355 6477633 Smal_0084 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026472.1 101169 R 391008 CDS YP_002026473.1 194363863 6477634 complement(103352..104473) 1 NC_011071.1 TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: xac:XAC0116 hypothetical protein; hypothetical protein 104473 6477634 Smal_0085 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026473.1 103352 R 391008 CDS YP_002026474.1 194363864 6477635 complement(104470..105366) 1 NC_011071.1 PFAM: protein of unknown function DUF58; KEGG: xcb:XC_0091 hypothetical protein; hypothetical protein 105366 6477635 Smal_0086 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026474.1 104470 R 391008 CDS YP_002026475.1 194363865 6477636 complement(105374..106357) 1 NC_011071.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase; ATPase 106357 6477636 Smal_0087 Stenotrophomonas maltophilia R551-3 ATPase YP_002026475.1 105374 R 391008 CDS YP_002026476.1 194363866 6477637 complement(106374..107081) 1 NC_011071.1 KEGG: xcb:XC_0093 hypothetical protein; hypothetical protein 107081 6477637 Smal_0088 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026476.1 106374 R 391008 CDS YP_002026477.1 194363867 6477638 complement(107081..108415) 1 NC_011071.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xac:XAC0120 TldD protein; peptidase U62 modulator of DNA gyrase 108415 6477638 Smal_0089 Stenotrophomonas maltophilia R551-3 peptidase U62 modulator of DNA gyrase YP_002026477.1 107081 R 391008 CDS YP_002026478.1 194363868 6477639 complement(108437..110071) 1 NC_011071.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV0092 putative modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 110071 6477639 Smal_0090 Stenotrophomonas maltophilia R551-3 peptidase U62 modulator of DNA gyrase YP_002026478.1 108437 R 391008 CDS YP_002026479.1 194363869 6477640 complement(110099..111730) 1 NC_011071.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV0093 putative modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 111730 6477640 Smal_0091 Stenotrophomonas maltophilia R551-3 peptidase U62 modulator of DNA gyrase YP_002026479.1 110099 R 391008 CDS YP_002026480.1 194363870 6477641 112416..113030 1 NC_011071.1 PFAM: protein of unknown function DUF938; KEGG: xoo:XOO0034 hypothetical protein; hypothetical protein 113030 6477641 Smal_0092 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026480.1 112416 D 391008 CDS YP_002026481.1 194363871 6477642 complement(113031..114353) 1 NC_011071.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bmu:Bmul_4225 HipA N-terminal domain protein; HipA N-terminal domain-containing protein 114353 6477642 Smal_0093 Stenotrophomonas maltophilia R551-3 HipA N-terminal domain-containing protein YP_002026481.1 113031 R 391008 CDS YP_002026482.1 194363872 6477643 complement(114357..114614) 1 NC_011071.1 PFAM: helix-turn-helix domain protein; KEGG: rso:RSp1252 putative transcription regulator protein; XRE family transcriptional regulator 114614 6477643 Smal_0094 Stenotrophomonas maltophilia R551-3 XRE family transcriptional regulator YP_002026482.1 114357 R 391008 CDS YP_002026483.1 194363873 6477644 complement(114772..118458) 1 NC_011071.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 118458 6477644 Smal_0095 Stenotrophomonas maltophilia R551-3 indolepyruvate ferredoxin oxidoreductase YP_002026483.1 114772 R 391008 CDS YP_002026484.1 194363874 6477645 118628..119263 1 NC_011071.1 KEGG: xcb:XC_0180 hypothetical protein; hypothetical protein 119263 6477645 Smal_0096 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026484.1 118628 D 391008 CDS YP_002026485.1 194363875 6477646 complement(119856..121340) 1 NC_011071.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pap:PSPA7_0798 probable ATPase; ATPase AAA 121340 6477646 Smal_0097 Stenotrophomonas maltophilia R551-3 ATPase AAA YP_002026485.1 119856 R 391008 CDS YP_002026486.1 194363876 6477647 121464..122093 1 NC_011071.1 KEGG: xcb:XC_0183 partition protein; partition protein 122093 6477647 Smal_0098 Stenotrophomonas maltophilia R551-3 partition protein YP_002026486.1 121464 D 391008 CDS YP_002026487.1 194363877 6477648 122131..122607 1 NC_011071.1 PFAM: Phosphoglycerate mutase; KEGG: xac:XAC0193 hypothetical protein; putative phosphohistidine phosphatase SixA 122607 6477648 Smal_0099 Stenotrophomonas maltophilia R551-3 putative phosphohistidine phosphatase SixA YP_002026487.1 122131 D 391008 CDS YP_002026488.1 194363878 6477649 122612..123229 1 NC_011071.1 PFAM: YceI family protein; KEGG: xac:XAC0194 hypothetical protein; hypothetical protein 123229 6477649 Smal_0100 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026488.1 122612 D 391008 CDS YP_002026489.1 194363879 6477650 123226..125277 1 NC_011071.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: xcv:XCV0178 phospholipase precursor; phospholipase D/transphosphatidylase 125277 6477650 Smal_0101 Stenotrophomonas maltophilia R551-3 phospholipase D/transphosphatidylase YP_002026489.1 123226 D 391008 CDS YP_002026490.1 194363880 6477651 125287..125721 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: xcv:XCV0179 hypothetical protein; thioesterase superfamily protein 125721 6477651 Smal_0102 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002026490.1 125287 D 391008 CDS YP_002026491.1 194363881 6477652 125842..126633 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: xcb:XC_0188 acetyltransferase; phospholipid/glycerol acyltransferase 126633 6477652 Smal_0103 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002026491.1 125842 D 391008 CDS YP_002026492.1 194363882 6477653 126641..127675 1 NC_011071.1 KEGG: xcb:XC_0189 hypothetical protein; hypothetical protein 127675 6477653 Smal_0104 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026492.1 126641 D 391008 CDS YP_002026493.1 194363883 6477654 127732..129801 1 NC_011071.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0199 hypothetical protein; hypothetical protein 129801 6477654 Smal_0105 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026493.1 127732 D 391008 CDS YP_002026494.1 194363884 6477655 129812..130423 1 NC_011071.1 PFAM: PEBP family protein; KEGG: xcb:XC_0191 hypothetical protein; PEBP family protein 130423 6477655 Smal_0106 Stenotrophomonas maltophilia R551-3 PEBP family protein YP_002026494.1 129812 D 391008 CDS YP_002026495.1 194363885 6477656 complement(130556..131383) 1 NC_011071.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein; hypothetical protein 131383 6477656 Smal_0107 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026495.1 130556 R 391008 CDS YP_002026496.1 194363886 6477657 complement(131457..132251) 1 NC_011071.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 132251 6477657 Smal_0108 Stenotrophomonas maltophilia R551-3 undecaprenyl pyrophosphate phosphatase YP_002026496.1 131457 R 391008 CDS YP_002026497.1 194363887 6477658 132476..133885 1 NC_011071.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: xcb:XC_0194 glutamine synthetase; glutamine synthetase 133885 6477658 Smal_0109 Stenotrophomonas maltophilia R551-3 glutamine synthetase YP_002026497.1 132476 D 391008 CDS YP_002026498.1 194363888 6477659 134155..134493 1 NC_011071.1 PFAM: nitrogen regulatory protein P-II; KEGG: xac:XAC0205 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 134493 6477659 Smal_0110 Stenotrophomonas maltophilia R551-3 nitrogen regulatory protein P-II YP_002026498.1 134155 D 391008 CDS YP_002026499.1 194363889 6477660 134515..135945 1 NC_011071.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: xcb:XC_0196 ammonium transporter; ammonium transporter 135945 6477660 Smal_0111 Stenotrophomonas maltophilia R551-3 ammonium transporter YP_002026499.1 134515 D 391008 CDS YP_002026500.1 194363890 6477661 136241..137965 1 NC_011071.1 PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: xfa:XF2550 outer membrane hemolysin activator protein; Polypeptide-transport-associated domain-containing protein ShlB-type 137965 6477661 Smal_0112 Stenotrophomonas maltophilia R551-3 Polypeptide-transport-associated domain-containing protein ShlB-type YP_002026500.1 136241 D 391008 CDS YP_002026501.1 194363891 6477662 138072..152972 1 NC_011071.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pst:PSPTO_3229 filamentous hemagglutinin, intein-containing, putative; filamentous hemagglutinin family outer membrane protein 152972 6477662 Smal_0113 Stenotrophomonas maltophilia R551-3 filamentous hemagglutinin family outer membrane protein YP_002026501.1 138072 D 391008 CDS YP_002026502.1 194363892 6477663 152978..153316 1 NC_011071.1 hypothetical protein 153316 6477663 Smal_0114 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026502.1 152978 D 391008 CDS YP_002026503.1 194363893 6477664 153441..154199 1 NC_011071.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: xcb:XC_3877 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 154199 6477664 Smal_0115 Stenotrophomonas maltophilia R551-3 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_002026503.1 153441 D 391008 CDS YP_002026504.1 194363894 6477665 complement(154330..155031) 1 NC_011071.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fjo:Fjoh_4495 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator 155031 6477665 Smal_0116 Stenotrophomonas maltophilia R551-3 LytTR family two component transcriptional regulator YP_002026504.1 154330 R 391008 CDS YP_002026505.1 194363895 6477666 complement(155019..156728) 1 NC_011071.1 KEGG: fjo:Fjoh_4494 hypothetical protein; C-terminal ATPase domain signal transduction-like protein 156728 6477666 Smal_0117 Stenotrophomonas maltophilia R551-3 C-terminal ATPase domain signal transduction-like protein YP_002026505.1 155019 R 391008 CDS YP_002026506.1 194363896 6477667 156856..158367 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: mmr:Mmar10_1192 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 158367 6477667 Smal_0118 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002026506.1 156856 D 391008 CDS YP_002026507.1 194363897 6477668 158433..159593 1 NC_011071.1 PFAM: MltA domain protein; 3D domain protein; KEGG: pst:PSPTO_1025 transglycosylase, putative; MltA domain-containing protein 159593 6477668 Smal_0119 Stenotrophomonas maltophilia R551-3 MltA domain-containing protein YP_002026507.1 158433 D 391008 CDS YP_002026508.1 194363898 6477669 159702..160004 1 NC_011071.1 KEGG: hch:HCH_03534 hypothetical protein; hypothetical protein 160004 6477669 Smal_0120 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026508.1 159702 D 391008 CDS YP_002026509.1 194363899 6477670 160084..162129 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0690 TonB-dependent receptor; TonB-dependent receptor 162129 6477670 Smal_0121 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026509.1 160084 D 391008 CDS YP_002026510.1 194363900 6477671 162245..163306 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_0197 two-component system sensor protein; signal transduction histidine kinase, nitrogen specific, NtrB 163306 6477671 Smal_0122 Stenotrophomonas maltophilia R551-3 signal transduction histidine kinase, nitrogen specific, NtrB YP_002026510.1 162245 D 391008 CDS YP_002026511.1 194363901 6477672 163299..164747 1 NC_011071.1 KEGG: xcb:XC_0198 two-component system regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 164747 6477672 Smal_0123 Stenotrophomonas maltophilia R551-3 nitrogen metabolism transcriptional regulator NtrC YP_002026511.1 163299 D 391008 CDS YP_002026512.1 194363902 6477673 164841..165410 1 NC_011071.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: xoo:XOO4482 superoxide dismutase like protein; copper/zinc binding superoxide dismutase 165410 6477673 Smal_0124 Stenotrophomonas maltophilia R551-3 copper/zinc binding superoxide dismutase YP_002026512.1 164841 D 391008 CDS YP_002026513.1 194363903 6477756 165442..166062 1 NC_011071.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: xcv:XCV0194 superoxide dismutase; copper/zinc binding superoxide dismutase 166062 6477756 Smal_0125 Stenotrophomonas maltophilia R551-3 copper/zinc binding superoxide dismutase YP_002026513.1 165442 D 391008 CDS YP_002026514.1 194363904 6477757 complement(166147..167214) 1 NC_011071.1 TIGRFAM: TonB family protein; TonB family protein 167214 6477757 Smal_0126 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002026514.1 166147 R 391008 CDS YP_002026515.1 194363905 6477758 complement(167311..168198) 1 NC_011071.1 KEGG: xac:XAC0212 hypothetical protein; hypothetical protein 168198 6477758 Smal_0127 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026515.1 167311 R 391008 CDS YP_002026516.1 194363906 6477759 168292..169587 1 NC_011071.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 169587 6477759 Smal_0128 Stenotrophomonas maltophilia R551-3 acetyl-CoA acetyltransferase YP_002026516.1 168292 D 391008 CDS YP_002026517.1 194363907 6477760 complement(169716..171011) 1 NC_011071.1 PFAM: HemY domain protein; KEGG: xac:XAC0214 porphyrin biosynthesis protein; HemY domain-containing protein 171011 6477760 Smal_0129 Stenotrophomonas maltophilia R551-3 HemY domain-containing protein YP_002026517.1 169716 R 391008 CDS YP_002026518.1 194363908 6477761 complement(171018..171992) 1 NC_011071.1 KEGG: xac:XAC0215 hypothetical protein; hypothetical protein 171992 6477761 Smal_0130 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026518.1 171018 R 391008 CDS YP_002026519.1 194363909 6477762 complement(172096..172905) 1 NC_011071.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 172905 6477762 Smal_0131 Stenotrophomonas maltophilia R551-3 uroporphyrinogen-III synthase YP_002026519.1 172096 R 391008 CDS YP_002026520.1 194363910 6477763 172941..173408 1 NC_011071.1 TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: xac:XAC0218 hypothetical protein; thioesterase domain-containing protein 173408 6477763 Smal_0132 Stenotrophomonas maltophilia R551-3 thioesterase domain-containing protein YP_002026520.1 172941 D 391008 CDS YP_002026521.1 194363911 6477764 173441..173866 1 NC_011071.1 KEGG: xcb:XC_0211 hypothetical protein; hypothetical protein 173866 6477764 Smal_0133 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026521.1 173441 D 391008 CDS YP_002026522.1 194363912 6477765 173924..174361 1 NC_011071.1 PFAM: Rhodanese domain protein; KEGG: xcb:XC_0212 hypothetical protein; rhodanese domain-containing protein 174361 6477765 Smal_0134 Stenotrophomonas maltophilia R551-3 rhodanese domain-containing protein YP_002026522.1 173924 D 391008 CDS YP_002026523.1 194363913 6477766 174462..174980 1 NC_011071.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 174980 6477766 Smal_0135 Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecB YP_002026523.1 174462 D 391008 CDS YP_002026524.1 194363914 6477767 175001..176026 1 NC_011071.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 176026 gpsA 6477767 gpsA Stenotrophomonas maltophilia R551-3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002026524.1 175001 D 391008 CDS YP_002026525.1 194363915 6477768 complement(176166..176642) 1 NC_011071.1 KEGG: cel:F09E10.7 F09E10.7a; hypothetical protein 176642 6477768 Smal_0137 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026525.1 176166 R 391008 CDS YP_002026526.1 194363916 6477769 176759..177427 1 NC_011071.1 KEGG: ssc:733643 nuclear receptor corepressor 2; hypothetical protein 177427 6477769 Smal_0138 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026526.1 176759 D 391008 CDS YP_002026527.1 194363917 6477770 complement(177464..178846) 1 NC_011071.1 TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpt:Bpet0232 hypothetical protein; HipA N-terminal domain-containing protein 178846 6477770 Smal_0139 Stenotrophomonas maltophilia R551-3 HipA N-terminal domain-containing protein YP_002026527.1 177464 R 391008 CDS YP_002026528.1 194363918 6477771 complement(178843..179106) 1 NC_011071.1 PFAM: helix-turn-helix domain protein; KEGG: reu:Reut_A1911 putative transcription regulator protein; helix-turn-helix domain-containing protein 179106 6477771 Smal_0140 Stenotrophomonas maltophilia R551-3 helix-turn-helix domain-containing protein YP_002026528.1 178843 R 391008 CDS YP_002026529.1 194363919 6477772 complement(179540..180226) 1 NC_011071.1 KEGG: cak:Caul_4105 hypothetical protein; hypothetical protein 180226 6477772 Smal_0141 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026529.1 179540 R 391008 CDS YP_002026530.1 194363920 6477773 complement(180383..180655) 1 NC_011071.1 KEGG: nar:Saro_2539 hypothetical protein; hypothetical protein 180655 6477773 Smal_0142 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026530.1 180383 R 391008 CDS YP_002026531.1 194363921 6477774 complement(180868..181863) 1 NC_011071.1 KEGG: swi:Swit_2733 hypothetical protein; hypothetical protein 181863 6477774 Smal_0143 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026531.1 180868 R 391008 CDS YP_002026532.1 194363922 6477775 182025..182600 1 NC_011071.1 KEGG: xom:XOO_3968 hypothetical protein; hypothetical protein 182600 6477775 Smal_0144 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026532.1 182025 D 391008 CDS YP_002026533.1 194363923 6477776 182722..183489 1 NC_011071.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_4320 transcriptional regulator, AraC family; AraC family transcriptional regulator 183489 6477776 Smal_0145 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002026533.1 182722 D 391008 CDS YP_002026534.1 194363924 6477777 183558..183926 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_2825 conserved hypothetical protein VCA0415; Glyoxalase/bleomycin resistance protein/dioxygenase 183926 6477777 Smal_0146 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002026534.1 183558 D 391008 CDS YP_002026535.1 194363925 6477778 184050..185024 1 NC_011071.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: spe:Spro_2444 Dyp-type peroxidase family; dyp-type peroxidase family protein 185024 6477778 Smal_0147 Stenotrophomonas maltophilia R551-3 dyp-type peroxidase family protein YP_002026535.1 184050 D 391008 CDS YP_002026536.1 194363926 6477779 185110..185526 1 NC_011071.1 KEGG: mms:mma_2366 hypothetical protein; hypothetical protein 185526 6477779 Smal_0148 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026536.1 185110 D 391008 CDS YP_002026537.1 194363927 6477780 complement(185635..186204) 1 NC_011071.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: bmu:Bmul_5035 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 186204 6477780 Smal_0149 Stenotrophomonas maltophilia R551-3 nicotinamide mononucleotide transporter PnuC YP_002026537.1 185635 R 391008 CDS YP_002026538.1 194363928 6477781 complement(186213..188402) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcc:XCC0674 putative siderophore receptor; TonB-dependent siderophore receptor 188402 6477781 Smal_0150 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002026538.1 186213 R 391008 CDS YP_002026539.1 194363929 6477782 complement(188678..189802) 1 NC_011071.1 PFAM: aminoglycoside phosphotransferase; KEGG: xac:XAC3528 hypothetical protein; aminoglycoside phosphotransferase 189802 6477782 Smal_0151 Stenotrophomonas maltophilia R551-3 aminoglycoside phosphotransferase YP_002026539.1 188678 R 391008 CDS YP_002026540.1 194363930 6477783 complement(189932..190339) 1 NC_011071.1 PFAM: 17 kDa surface antigen; KEGG: bpt:Bpet0245 hypothetical protein; 17 kDa surface antigen 190339 6477783 Smal_0152 Stenotrophomonas maltophilia R551-3 17 kDa surface antigen YP_002026540.1 189932 R 391008 CDS YP_002026541.1 194363931 6477784 complement(190588..192585) 1 NC_011071.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: xcv:XCV3751 hypothetical protein; peptidoglycan-binding domain 1 protein 192585 6477784 Smal_0153 Stenotrophomonas maltophilia R551-3 peptidoglycan-binding domain 1 protein YP_002026541.1 190588 R 391008 CDS YP_002026542.1 194363932 6477785 complement(192697..193647) 1 NC_011071.1 KEGG: pfl:PFL_2375 hypothetical protein; hypothetical protein 193647 6477785 Smal_0154 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026542.1 192697 R 391008 CDS YP_002026543.1 194363933 6477786 complement(193846..194484) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_1107 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 194484 6477786 Smal_0155 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002026543.1 193846 R 391008 CDS YP_002026544.1 194363934 6477787 194560..198159 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; multi-sensor hybrid histidine kinase 198159 6477787 Smal_0156 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002026544.1 194560 D 391008 CDS YP_002026545.1 194363935 6477788 complement(198153..198554) 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: nar:Saro_0817 cytochrome c, class I; cytochrome c class I 198554 6477788 Smal_0157 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002026545.1 198153 R 391008 CDS YP_002026546.1 194363936 6477789 complement(198620..200296) 1 NC_011071.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rme:Rmet_1146 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 200296 6477789 Smal_0158 Stenotrophomonas maltophilia R551-3 electron-transferring-flavoprotein dehydrogenase YP_002026546.1 198620 R 391008 CDS YP_002026547.1 194363937 6477790 200583..201776 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xcb:XC_2809 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 201776 6477790 Smal_0159 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002026547.1 200583 D 391008 CDS YP_002026548.1 194363938 6477791 complement(201909..202784) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_3289 probable transcriptional regulator, LysR family; LysR family transcriptional regulator 202784 6477791 Smal_0160 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026548.1 201909 R 391008 CDS YP_002026549.1 194363939 6477792 202888..203205 1 NC_011071.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B0521 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 203205 6477792 Smal_0161 Stenotrophomonas maltophilia R551-3 carboxymuconolactone decarboxylase YP_002026549.1 202888 D 391008 CDS YP_002026550.1 194363940 6477793 203217..203609 1 NC_011071.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: azc:AZC_3698 putative 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 203609 6477793 Smal_0162 Stenotrophomonas maltophilia R551-3 4-oxalocrotonate tautomerase YP_002026550.1 203217 D 391008 CDS YP_002026551.1 194363941 6477794 complement(203656..204135) 1 NC_011071.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: xcb:XC_0219 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 204135 6477794 Smal_0163 Stenotrophomonas maltophilia R551-3 tRNA/rRNA methyltransferase SpoU YP_002026551.1 203656 R 391008 CDS YP_002026552.1 194363942 6477795 complement(204205..204681) 1 NC_011071.1 KEGG: xac:XAC0231 hypothetical protein; hypothetical protein 204681 6477795 Smal_0164 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026552.1 204205 R 391008 CDS YP_002026553.1 194363943 6477796 205097..207946 1 NC_011071.1 PFAM: peptidase M16 domain protein; KEGG: xcv:XCV0666 putative zinc metalloprotease precursor; peptidase M16 domain-containing protein 207946 6477796 Smal_0165 Stenotrophomonas maltophilia R551-3 peptidase M16 domain-containing protein YP_002026553.1 205097 D 391008 CDS YP_002026554.1 194363944 6477797 208151..208468 1 NC_011071.1 KEGG: xcv:XCV0238 putative secreted protein; hypothetical protein 208468 6477797 Smal_0166 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026554.1 208151 D 391008 CDS YP_002026555.1 194363945 6477798 208572..209588 1 NC_011071.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 209588 6477798 Smal_0167 Stenotrophomonas maltophilia R551-3 3-oxoacyl-ACP synthase YP_002026555.1 208572 D 391008 CDS YP_002026556.1 194363946 6477799 209705..210595 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV0241 putative hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 210595 6477799 Smal_0168 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002026556.1 209705 D 391008 CDS YP_002026557.1 194363947 6477800 complement(210711..211136) 1 NC_011071.1 PFAM: protein of unknown function UPF0153; KEGG: xac:XAC0236 ferredoxin; hypothetical protein 211136 6477800 Smal_0169 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026557.1 210711 R 391008 CDS YP_002026558.1 194363948 6477801 211241..212899 1 NC_011071.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 212899 6477801 Smal_0170 Stenotrophomonas maltophilia R551-3 peptide synthase YP_002026558.1 211241 D 391008 CDS YP_002026559.1 194363949 6477802 212896..213888 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: xcb:XC_0229 NAD(P)H steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 213888 6477802 Smal_0171 Stenotrophomonas maltophilia R551-3 3-beta hydroxysteroid dehydrogenase/isomerase YP_002026559.1 212896 D 391008 CDS YP_002026560.1 194363950 6477803 213971..214126 1 NC_011071.1 PFAM: protein of unknown function DUF1328; KEGG: xac:XAC0239 hypothetical protein; hypothetical protein 214126 6477803 Smal_0172 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026560.1 213971 D 391008 CDS YP_002026561.1 194363951 6477804 complement(214313..215407) 1 NC_011071.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 215407 ddl 6477804 ddl Stenotrophomonas maltophilia R551-3 D-alanyl-alanine synthetase A YP_002026561.1 214313 R 391008 CDS YP_002026562.1 194363952 6477805 215958..216593 1 NC_011071.1 PFAM: Sterol-binding domain protein; KEGG: xcv:XCV0247 hypothetical protein; Sterol-binding domain-containing protein 216593 6477805 Smal_0174 Stenotrophomonas maltophilia R551-3 Sterol-binding domain-containing protein YP_002026562.1 215958 D 391008 CDS YP_002026563.1 194363953 6477806 216590..218245 1 NC_011071.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 218245 ubiB 6477806 ubiB Stenotrophomonas maltophilia R551-3 putative ubiquinone biosynthesis protein UbiB YP_002026563.1 216590 D 391008 CDS YP_002026564.1 194363954 6477807 218251..218829 1 NC_011071.1 PFAM: O-methyltransferase family 3; KEGG: xac:XAC2121 O-methyltransferase; O-methyltransferase family protein 218829 6477807 Smal_0176 Stenotrophomonas maltophilia R551-3 O-methyltransferase family protein YP_002026564.1 218251 D 391008 CDS YP_002026565.1 194363955 6477808 218937..219698 1 NC_011071.1 PFAM: pseudouridine synthase; KEGG: xcv:XCV0250 pseudouridylate synthase; pseudouridine synthase 219698 6477808 Smal_0177 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002026565.1 218937 D 391008 CDS YP_002026566.1 194363956 6477809 complement(219783..220310) 1 NC_011071.1 KEGG: xom:XOO_0319 hypothetical protein; hypothetical protein 220310 6477809 Smal_0178 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026566.1 219783 R 391008 CDS YP_002026567.1 194363957 6477810 220445..220876 1 NC_011071.1 PFAM: Class I peptide chain release factor; KEGG: xcb:XC_0237 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 220876 6477810 Smal_0179 Stenotrophomonas maltophilia R551-3 peptidyl-tRNA hydrolase domain-containing protein YP_002026567.1 220445 D 391008 CDS YP_002026568.1 194363958 6477811 220881..221483 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: xcv:XCV0253 putative acyltransferase; phospholipid/glycerol acyltransferase 221483 6477811 Smal_0180 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002026568.1 220881 D 391008 CDS YP_002026569.1 194363959 6477812 221595..223751 1 NC_011071.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xoo:XOO0344 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 223751 6477812 Smal_0181 Stenotrophomonas maltophilia R551-3 peptidyl-dipeptidase Dcp YP_002026569.1 221595 D 391008 CDS YP_002026570.1 194363960 6477813 complement(223900..224346) 1 NC_011071.1 KEGG: xcb:XC_4173 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase 224346 6477813 Smal_0182 Stenotrophomonas maltophilia R551-3 3-dehydroquinate dehydratase YP_002026570.1 223900 R 391008 CDS YP_002026571.1 194363961 6477814 complement(224350..224751) 1 NC_011071.1 KEGG: xom:XOO_0298 hypothetical protein; hypothetical protein 224751 6477814 Smal_0183 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026571.1 224350 R 391008 CDS YP_002026572.1 194363962 6477815 225002..225628 1 NC_011071.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: swd:Swoo_0360 signal peptidase I; signal peptidase I 225628 6477815 Smal_0184 Stenotrophomonas maltophilia R551-3 signal peptidase I YP_002026572.1 225002 D 391008 CDS YP_002026573.1 194363963 6477816 225686..227008 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_5565 major facilitator superfamily MFS_1; major facilitator superfamily protein 227008 6477816 Smal_0185 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026573.1 225686 D 391008 CDS YP_002026574.1 194363964 6477817 complement(227092..228000) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_0564 transcriptional regulator, LysR family; LysR family transcriptional regulator 228000 6477817 Smal_0186 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026574.1 227092 R 391008 CDS YP_002026575.1 194363965 6477818 complement(228277..229245) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xac:XAC0255 transcriptional regulator; LysR family transcriptional regulator 229245 6477818 Smal_0187 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026575.1 228277 R 391008 CDS YP_002026576.1 194363966 6477819 229356..230993 1 NC_011071.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 230993 6477819 Smal_0188 Stenotrophomonas maltophilia R551-3 malate synthase YP_002026576.1 229356 D 391008 CDS YP_002026577.1 194363967 6477820 231058..232359 1 NC_011071.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: xcv:XCV0265 isocitrate lyase; isocitrate lyase 232359 6477820 Smal_0189 Stenotrophomonas maltophilia R551-3 isocitrate lyase YP_002026577.1 231058 D 391008 CDS YP_002026578.1 194363968 6477821 232779..233819 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; KEGG: xcv:XCV0266 putative cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 233819 6477821 Smal_0190 Stenotrophomonas maltophilia R551-3 cyclic nucleotide-binding protein YP_002026578.1 232779 D 391008 CDS YP_002026579.1 194363969 6477822 233836..236340 1 NC_011071.1 PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: xcb:XC_0250 hypothetical protein; hypothetical protein 236340 6477822 Smal_0191 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026579.1 233836 D 391008 CDS YP_002026580.1 194363970 6477823 complement(236357..236647) 1 NC_011071.1 KEGG: xac:XAC0260 hypothetical protein; hypothetical protein 236647 6477823 Smal_0192 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026580.1 236357 R 391008 CDS YP_002026581.1 194363971 6477824 236812..237990 1 NC_011071.1 KEGG: xcv:XCV0269 hypothetical protein; hypothetical protein 237990 6477824 Smal_0193 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026581.1 236812 D 391008 CDS YP_002026582.1 194363972 6477825 complement(238039..238380) 1 NC_011071.1 KEGG: xcb:XC_0251 hypothetical protein; hypothetical protein 238380 6477825 Smal_0194 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026582.1 238039 R 391008 CDS YP_002026583.1 194363973 6477897 complement(238413..238727) 1 NC_011071.1 KEGG: xcb:XC_0251 hypothetical protein; hypothetical protein 238727 6477897 Smal_0195 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026583.1 238413 R 391008 CDS YP_002026584.1 194363974 6477898 complement(239128..241110) 1 NC_011071.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: xcv:XCV0271 biotin carboxylase; carbamoyl-phosphate synthase L chain ATP-binding 241110 6477898 Smal_0196 Stenotrophomonas maltophilia R551-3 carbamoyl-phosphate synthase L chain ATP-binding YP_002026584.1 239128 R 391008 CDS YP_002026585.1 194363975 6477899 complement(241137..242747) 1 NC_011071.1 PFAM: carboxyl transferase; KEGG: xcb:XC_0255 acyl-CoA carboxyltransferase beta chain; propionyl-CoA carboxylase 242747 6477899 Smal_0197 Stenotrophomonas maltophilia R551-3 propionyl-CoA carboxylase YP_002026585.1 241137 R 391008 CDS YP_002026586.1 194363976 6477900 complement(242758..243921) 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xcv:XCV0273 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 243921 6477900 Smal_0198 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002026586.1 242758 R 391008 CDS YP_002026587.1 194363977 6477901 244082..244690 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcb:XC_0257 transcriptional regulator AcrR family; TetR family transcriptional regulator 244690 6477901 Smal_0199 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002026587.1 244082 D 391008 CDS YP_002026588.1 194363978 6477902 244896..245414 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: xcv:XCV0281 putative cytochrome c; cytochrome c class I 245414 6477902 Smal_0200 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002026588.1 244896 D 391008 CDS YP_002026589.1 194363979 6477903 245598..247043 1 NC_011071.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0274 nuclease; endonuclease/exonuclease/phosphatase 247043 6477903 Smal_0201 Stenotrophomonas maltophilia R551-3 endonuclease/exonuclease/phosphatase YP_002026589.1 245598 D 391008 CDS YP_002026590.1 194363980 6477904 complement(247101..247958) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_0269 integral membrane protein; hypothetical protein 247958 6477904 Smal_0202 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026590.1 247101 R 391008 CDS YP_002026591.1 194363981 6477905 248002..248673 1 NC_011071.1 KEGG: xcb:XC_0270 hypothetical protein; hypothetical protein 248673 6477905 Smal_0203 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026591.1 248002 D 391008 CDS YP_002026592.1 194363982 6477906 248670..249770 1 NC_011071.1 PFAM: AFG1-family ATPase; KEGG: xcv:XCV0288 putative ATPase; AFG1 family ATPase 249770 6477906 Smal_0204 Stenotrophomonas maltophilia R551-3 AFG1 family ATPase YP_002026592.1 248670 D 391008 CDS YP_002026593.1 194363983 6477907 complement(249846..250682) 1 NC_011071.1 KEGG: xac:XAC0284 hypothetical protein; hypothetical protein 250682 6477907 Smal_0205 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026593.1 249846 R 391008 CDS YP_002026594.1 194363984 6477908 251258..253669 1 NC_011071.1 KEGG: mxa:MXAN_5057 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 253669 6477908 Smal_0206 Stenotrophomonas maltophilia R551-3 ribonucleoside-diphosphate reductase subunit alpha YP_002026594.1 251258 D 391008 CDS YP_002026595.1 194363985 6477909 253799..254818 1 NC_011071.1 PFAM: ribonucleotide reductase; KEGG: bba:Bd1983 ribonucleotide-diphosphate reductase small chain; ribonucleoside-diphosphate reductase 254818 6477909 Smal_0207 Stenotrophomonas maltophilia R551-3 ribonucleoside-diphosphate reductase YP_002026595.1 253799 D 391008 CDS YP_002026596.1 194363986 6477910 complement(254976..255611) 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppg:PputGB1_2255 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 255611 6477910 Smal_0208 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002026596.1 254976 R 391008 CDS YP_002026597.1 194363987 6477911 255764..256165 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: xcb:XC_4072 hypothetical protein; thioesterase superfamily protein 256165 6477911 Smal_0209 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002026597.1 255764 D 391008 CDS YP_002026598.1 194363988 6477912 256221..257027 1 NC_011071.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 257027 6477912 Smal_0210 Stenotrophomonas maltophilia R551-3 NAD-dependent deacetylase YP_002026598.1 256221 D 391008 CDS YP_002026599.1 194363989 6477913 257182..258282 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: xac:XAC0321 FMN oxidoreductase; NADH:flavin oxidoreductase 258282 6477913 Smal_0211 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002026599.1 257182 D 391008 CDS YP_002026600.1 194363990 6477914 complement(258286..259197) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3052 transcriptional regulator; LysR family transcriptional regulator 259197 6477914 Smal_0212 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026600.1 258286 R 391008 CDS YP_002026601.1 194363991 6477915 259312..260163 1 NC_011071.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 260163 purU 6477915 purU Stenotrophomonas maltophilia R551-3 formyltetrahydrofolate deformylase YP_002026601.1 259312 D 391008 CDS YP_002026602.1 194363992 6477916 complement(260276..260902) 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: xfn:XfasM23_1394 nicotinamidase; nicotinamidase 260902 6477916 Smal_0214 Stenotrophomonas maltophilia R551-3 nicotinamidase YP_002026602.1 260276 R 391008 CDS YP_002026603.1 194363993 6477917 complement(260958..261644) 1 NC_011071.1 PFAM: protein of unknown function DUF208; KEGG: spe:Spro_2683 protein of unknown function DUF208; hypothetical protein 261644 6477917 Smal_0215 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026603.1 260958 R 391008 CDS YP_002026604.1 194363994 6477918 262147..264021 1 NC_011071.1 PFAM: Patatin; KEGG: sme:SMc01492 probable suppressor of E.COLI RpoH thermosensitive MUTATION transmembrane protein; patatin 264021 6477918 Smal_0216 Stenotrophomonas maltophilia R551-3 patatin YP_002026604.1 262147 D 391008 CDS YP_002026605.1 194363995 6477919 complement(264101..265075) 1 NC_011071.1 PFAM: protein of unknown function DUF1028; KEGG: ade:Adeh_0307 hypothetical protein; hypothetical protein 265075 6477919 Smal_0217 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026605.1 264101 R 391008 CDS YP_002026606.1 194363996 6477920 complement(265373..266740) 1 NC_011071.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xac:XAC1311 transcriptional regulator; XRE family transcriptional regulator 266740 6477920 Smal_0218 Stenotrophomonas maltophilia R551-3 XRE family transcriptional regulator YP_002026606.1 265373 R 391008 CDS YP_002026607.1 194363997 6477921 266856..268361 1 NC_011071.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: xcv:XCV1363 putative aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 268361 6477921 Smal_0219 Stenotrophomonas maltophilia R551-3 methylmalonate-semialdehyde dehydrogenase YP_002026607.1 266856 D 391008 CDS YP_002026608.1 194363998 6477922 268376..269542 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC1313 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 269542 6477922 Smal_0220 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002026608.1 268376 D 391008 CDS YP_002026609.1 194363999 6477923 269539..270336 1 NC_011071.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 270336 6477923 Smal_0221 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase YP_002026609.1 269539 D 391008 CDS YP_002026610.1 194364000 6477924 270333..271508 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xcv:XCV1366 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 271508 6477924 Smal_0222 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase/isomerase YP_002026610.1 270333 D 391008 CDS YP_002026611.1 194364001 6477925 271505..272395 1 NC_011071.1 KEGG: xcv:XCV1367 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 272395 6477925 Smal_0223 Stenotrophomonas maltophilia R551-3 3-hydroxyisobutyrate dehydrogenase YP_002026611.1 271505 D 391008 CDS YP_002026612.1 194364002 6477926 complement(272531..272956) 1 NC_011071.1 PFAM: OsmC family protein; KEGG: psa:PST_0169 organic hydroperoxide resistance protein; OsmC family protein 272956 6477926 Smal_0224 Stenotrophomonas maltophilia R551-3 OsmC family protein YP_002026612.1 272531 R 391008 CDS YP_002026613.1 194364003 6477927 complement(273068..274180) 1 NC_011071.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_3086 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 274180 6477927 Smal_0225 Stenotrophomonas maltophilia R551-3 cation diffusion facilitator family transporter YP_002026613.1 273068 R 391008 CDS YP_002026614.1 194364004 6477928 274267..275721 1 NC_011071.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: xcv:XCV3891 sulfate permease; sulfate transporter 275721 6477928 Smal_0226 Stenotrophomonas maltophilia R551-3 sulfate transporter YP_002026614.1 274267 D 391008 CDS YP_002026615.1 194364005 6477929 276483..277514 1 NC_011071.1 PFAM: dihydrouridine synthase DuS; KEGG: xcb:XC_4033 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 277514 6477929 Smal_0227 Stenotrophomonas maltophilia R551-3 tRNA-dihydrouridine synthase A YP_002026615.1 276483 D 391008 CDS YP_002026616.1 194364006 6477930 277727..278101 1 NC_011071.1 KEGG: xom:XOO_0384 hypothetical protein; hypothetical protein 278101 6477930 Smal_0228 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026616.1 277727 D 391008 CDS YP_002026617.1 194364007 6477931 278175..278858 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xom:XOO_0385 two-component system regulatory protein; winged helix family two component transcriptional regulator 278858 6477931 Smal_0229 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002026617.1 278175 D 391008 CDS YP_002026618.1 194364008 6477932 278881..280308 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xac:XAC4022 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 280308 6477932 Smal_0230 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002026618.1 278881 D 391008 CDS YP_002026619.1 194364009 6477933 complement(280402..281190) 1 NC_011071.1 PFAM: protein of unknown function DUF980; KEGG: xcv:XCV4112 hypothetical protein; hypothetical protein 281190 6477933 Smal_0231 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026619.1 280402 R 391008 CDS YP_002026620.1 194364010 6477934 complement(281157..281441) 1 NC_011071.1 KEGG: xcv:XCV4111 putative secreted protein; hypothetical protein 281441 6477934 Smal_0232 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026620.1 281157 R 391008 CDS YP_002026621.1 194364011 6477935 281586..282554 1 NC_011071.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 282554 6477935 Smal_0233 Stenotrophomonas maltophilia R551-3 biotin--protein ligase YP_002026621.1 281586 D 391008 CDS YP_002026622.1 194364012 6477936 282551..283282 1 NC_011071.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 283282 6477936 Smal_0234 Stenotrophomonas maltophilia R551-3 pantothenate kinase YP_002026622.1 282551 D 391008 CDS YP_002026623.1 194364013 6477937 283292..284140 1 NC_011071.1 PFAM: Sporulation domain protein; KEGG: xac:XAC4016 hypothetical protein; sporulation domain-containing protein 284140 6477937 Smal_0235 Stenotrophomonas maltophilia R551-3 sporulation domain-containing protein YP_002026623.1 283292 D 391008 CDS YP_002026624.1 194364014 6477939 284440..284727 1 NC_011071.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891; addiction module killer protein 284727 6477939 Smal_0236 Stenotrophomonas maltophilia R551-3 addiction module killer protein YP_002026624.1 284440 D 391008 CDS YP_002026625.1 194364015 6477940 284786..285088 1 NC_011071.1 TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family; putative transcriptional regulator 285088 6477940 Smal_0237 Stenotrophomonas maltophilia R551-3 putative transcriptional regulator YP_002026625.1 284786 D 391008 CDS YP_002026626.1 194364016 6477941 285891..286811 1 NC_011071.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: xcv:XCV4102 arginase; arginase 286811 6477941 Smal_0238 Stenotrophomonas maltophilia R551-3 arginase YP_002026626.1 285891 D 391008 CDS YP_002026627.1 194364017 6477942 286974..287111 1 NC_011071.1 PFAM: Entericidin EcnAB; KEGG: xcb:XC_4013 putative entericidin A; entericidin EcnAB 287111 6477942 Smal_0239 Stenotrophomonas maltophilia R551-3 entericidin EcnAB YP_002026627.1 286974 D 391008 CDS YP_002026628.1 194364018 6477943 287315..287536 1 NC_011071.1 PFAM: CsbD family protein; KEGG: xac:XAC4007 hypothetical protein; CsbD family protein 287536 6477943 Smal_0240 Stenotrophomonas maltophilia R551-3 CsbD family protein YP_002026628.1 287315 D 391008 CDS YP_002026629.1 194364019 6477944 complement(287610..288410) 1 NC_011071.1 KEGG: afw:Anae109_3503 hypothetical protein; hypothetical protein 288410 6477944 Smal_0241 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026629.1 287610 R 391008 CDS YP_002026630.1 194364020 6477945 288519..289811 1 NC_011071.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 289811 6477945 Smal_0242 Stenotrophomonas maltophilia R551-3 tryptophanyl-tRNA synthetase YP_002026630.1 288519 D 391008 CDS YP_002026631.1 194364021 6477946 289950..290252 1 NC_011071.1 hypothetical protein 290252 6477946 Smal_0243 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026631.1 289950 D 391008 CDS YP_002026632.1 194364022 6477947 290408..291340 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: xac:XAC4005 beta-lactamase related protein; beta-lactamase domain-containing protein 291340 6477947 Smal_0244 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002026632.1 290408 D 391008 CDS YP_002026633.1 194364023 6477948 291446..293098 1 NC_011071.1 PFAM: peptidase M28; KEGG: xcv:XCV4096 putative peptidase precursor; peptidase M28 293098 6477948 Smal_0245 Stenotrophomonas maltophilia R551-3 peptidase M28 YP_002026633.1 291446 D 391008 CDS YP_002026634.1 194364024 6477949 complement(293225..293578) 1 NC_011071.1 hypothetical protein 293578 6477949 Smal_0246 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026634.1 293225 R 391008 CDS YP_002026635.1 194364025 6477950 complement(293589..294923) 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xcb:XC_4259 dicarboxylate transport protein; general substrate transporter 294923 6477950 Smal_0247 Stenotrophomonas maltophilia R551-3 general substrate transporter YP_002026635.1 293589 R 391008 CDS YP_002026636.1 194364026 6477951 295236..296141 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC4003 hypothetical protein; hypothetical protein 296141 6477951 Smal_0248 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026636.1 295236 D 391008 CDS YP_002026637.1 194364027 6477952 296138..297034 1 NC_011071.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcv:XCV4093 drug/metabolite transporter superfamily protein; RarD protein, DMT superfamily transporter 297034 6477952 Smal_0249 Stenotrophomonas maltophilia R551-3 RarD protein, DMT superfamily transporter YP_002026637.1 296138 D 391008 CDS YP_002026638.1 194364028 6477953 complement(297266..300124) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor 300124 6477953 Smal_0250 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026638.1 297266 R 391008 CDS YP_002026639.1 194364029 6477954 complement(300495..301817) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xom:XOO_0138 hypothetical protein; hypothetical protein 301817 6477954 Smal_0251 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026639.1 300495 R 391008 CDS YP_002026640.1 194364030 6477955 complement(301831..302988) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xom:XOO_0137 hypothetical protein; hypothetical protein 302988 6477955 Smal_0252 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026640.1 301831 R 391008 CDS YP_002026641.1 194364031 6477956 complement(303003..303692) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3996 ABC transporter ATP-binding protein; ABC transporter-like protein 303692 6477956 Smal_0253 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026641.1 303003 R 391008 CDS YP_002026642.1 194364032 6477957 complement(303795..305048) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV4088 membrane fusion protein; RND family efflux transporter MFP subunit 305048 6477957 Smal_0254 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002026642.1 303795 R 391008 CDS YP_002026643.1 194364033 6477958 305251..306147 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1147 ABC transporter, ATP-binding protein; ABC transporter-like protein 306147 6477958 Smal_0255 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026643.1 305251 D 391008 CDS YP_002026644.1 194364034 6477959 306144..306920 1 NC_011071.1 PFAM: ABC-2 type transporter; KEGG: ilo:IL0311 ABC-type multidrug transport system, permease component; ABC-2 type transporter 306920 6477959 Smal_0256 Stenotrophomonas maltophilia R551-3 ABC-2 type transporter YP_002026644.1 306144 D 391008 CDS YP_002026645.1 194364035 6477960 306927..308141 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcv:XCV4087 two-component system sensor kinase; integral membrane sensor signal transduction histidine kinase 308141 6477960 Smal_0257 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002026645.1 306927 D 391008 CDS YP_002026646.1 194364036 6477961 308138..308740 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcv:XCV4086 two-component system response regulator, LuxR family; two component LuxR family transcriptional regulator 308740 6477961 Smal_0258 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002026646.1 308138 D 391008 CDS YP_002026647.1 194364037 6477962 complement(309349..309885) 1 NC_011071.1 PFAM: cytochrome B561; KEGG: xac:XAC3991 cytochrome b561; cytochrome B561 309885 6477962 Smal_0259 Stenotrophomonas maltophilia R551-3 cytochrome B561 YP_002026647.1 309349 R 391008 CDS YP_002026648.1 194364038 6477963 complement(309882..310985) 1 NC_011071.1 PFAM: Catalase domain protein; KEGG: xac:XAC3990 catalase; Catalase domain-containing protein 310985 6477963 Smal_0260 Stenotrophomonas maltophilia R551-3 Catalase domain-containing protein YP_002026648.1 309882 R 391008 CDS YP_002026649.1 194364039 6477964 complement(311121..312488) 1 NC_011071.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: xcb:XC_3992 leucine aminopeptidase; leucyl aminopeptidase 312488 6477964 Smal_0261 Stenotrophomonas maltophilia R551-3 leucyl aminopeptidase YP_002026649.1 311121 R 391008 CDS YP_002026650.1 194364040 6477965 complement(312492..313211) 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcb:XC_3991 hydrolase; HAD-superfamily hydrolase 313211 6477965 Smal_0262 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002026650.1 312492 R 391008 CDS YP_002026651.1 194364041 6477966 complement(313243..314352) 1 NC_011071.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_3990 transport protein; hypothetical protein 314352 6477966 Smal_0263 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026651.1 313243 R 391008 CDS YP_002026652.1 194364042 6477967 complement(314420..314887) 1 NC_011071.1 KEGG: xcb:XC_3989 hypothetical protein; hypothetical protein 314887 6477967 Smal_0264 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026652.1 314420 R 391008 CDS YP_002026653.1 194364043 6477968 complement(314884..315354) 1 NC_011071.1 KEGG: xcv:XCV4076 hypothetical protein; hypothetical protein 315354 6477968 Smal_0265 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026653.1 314884 R 391008 CDS YP_002026654.1 194364044 6477969 complement(315363..315728) 1 NC_011071.1 KEGG: xcb:XC_3987 hypothetical protein; hypothetical protein 315728 6477969 Smal_0266 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026654.1 315363 R 391008 CDS YP_002026655.1 194364045 6477970 complement(315830..317263) 1 NC_011071.1 KEGG: xcv:XCV4074 protease DO precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 317263 6477970 Smal_0267 Stenotrophomonas maltophilia R551-3 protease Do YP_002026655.1 315830 R 391008 CDS YP_002026656.1 194364046 6477971 317755..318663 1 NC_011071.1 KEGG: bvi:Bcep1808_0573 hypothetical protein; hypothetical protein 318663 6477971 Smal_0268 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026656.1 317755 D 391008 CDS YP_002026657.1 194364047 6477972 318771..319460 1 NC_011071.1 KEGG: pde:Pden_1723 hypothetical protein; hypothetical protein 319460 6477972 Smal_0269 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026657.1 318771 D 391008 CDS YP_002026658.1 194364048 6477973 complement(319476..319835) 1 NC_011071.1 PFAM: protein of unknown function DUF1428; KEGG: xcb:XC_3061 hypothetical protein; hypothetical protein 319835 6477973 Smal_0270 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026658.1 319476 R 391008 CDS YP_002026659.1 194364049 6477974 320118..320690 1 NC_011071.1 KEGG: xcb:XC_0215 hypothetical protein; hypothetical protein 320690 6477974 Smal_0271 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026659.1 320118 D 391008 CDS YP_002026660.1 194364050 6477975 320881..321615 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bpd:BURPS668_A0190 capsula synthesis response regulator transcription regulator protein; two component LuxR family transcriptional regulator 321615 6477975 Smal_0272 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002026660.1 320881 D 391008 CDS YP_002026661.1 194364051 6477976 complement(321560..321949) 1 NC_011071.1 KEGG: xcb:XC_3253 hypothetical protein; hypothetical protein 321949 6477976 Smal_0273 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026661.1 321560 R 391008 CDS YP_002026662.1 194364052 6477977 322128..322826 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_3711 hypothetical protein; hypothetical protein 322826 6477977 Smal_0274 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026662.1 322128 D 391008 CDS YP_002026663.1 194364053 6477978 complement(322823..324064) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP_1850 hypothetical protein; major facilitator superfamily protein 324064 6477978 Smal_0275 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026663.1 322823 R 391008 CDS YP_002026664.1 194364054 6478061 324115..325002 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppg:PputGB1_1427 transcriptional regulator, LysR family; LysR family transcriptional regulator 325002 6478061 Smal_0276 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026664.1 324115 D 391008 CDS YP_002026665.1 194364055 6478062 complement(324971..325438) 1 NC_011071.1 PFAM: protein of unknown function DUF1456; KEGG: xcb:XC_0287 hypothetical protein; hypothetical protein 325438 6478062 Smal_0277 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026665.1 324971 R 391008 CDS YP_002026666.1 194364056 6478063 325601..326353 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcv:XCV4032 putative oxidoreductase precursor; short-chain dehydrogenase/reductase SDR 326353 6478063 Smal_0278 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002026666.1 325601 D 391008 CDS YP_002026667.1 194364057 6478064 complement(326515..327426) 1 NC_011071.1 PFAM: Sporulation domain protein; KEGG: xcv:XCV4030 putative secreted protein; sporulation domain-containing protein 327426 6478064 Smal_0279 Stenotrophomonas maltophilia R551-3 sporulation domain-containing protein YP_002026667.1 326515 R 391008 CDS YP_002026668.1 194364058 6478065 complement(327448..329136) 1 NC_011071.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 329136 argS 6478065 argS Stenotrophomonas maltophilia R551-3 arginyl-tRNA synthetase YP_002026668.1 327448 R 391008 CDS YP_002026669.1 194364059 6478066 complement(329251..329955) 1 NC_011071.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 329955 radC 6478066 radC Stenotrophomonas maltophilia R551-3 DNA repair protein RadC YP_002026669.1 329251 R 391008 CDS YP_002026670.1 194364060 6478067 330107..331162 1 NC_011071.1 KEGG: atc:AGR_C_1421 hypothetical protein; hypothetical protein 331162 6478067 Smal_0282 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026670.1 330107 D 391008 CDS YP_002026671.1 194364061 6478068 complement(331174..331800) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bcm:Bcenmc03_4702 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 331800 6478068 Smal_0283 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002026671.1 331174 R 391008 CDS YP_002026672.1 194364062 6478069 332029..333291 1 NC_011071.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 333291 6478069 Smal_0284 Stenotrophomonas maltophilia R551-3 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_002026672.1 332029 D 391008 CDS YP_002026673.1 194364063 6478070 333288..333761 1 NC_011071.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 333761 dut 6478070 dut Stenotrophomonas maltophilia R551-3 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002026673.1 333288 D 391008 CDS YP_002026674.1 194364064 6478071 333774..336122 1 NC_011071.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: xcv:XCV4025 phosphomannomutase; phosphomannomutase 336122 6478071 Smal_0286 Stenotrophomonas maltophilia R551-3 phosphomannomutase YP_002026674.1 333774 D 391008 CDS YP_002026675.1 194364065 6478072 complement(336218..336931) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC0760 two-component system regulatory protein; winged helix family two component transcriptional regulator 336931 6478072 Smal_0287 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002026675.1 336218 R 391008 CDS YP_002026676.1 194364066 6478073 complement(336912..339587) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: xcb:XC_3529 two-component system sensor protein; osmosensitive K+ channel signal transduction histidine kinase 339587 6478073 Smal_0288 Stenotrophomonas maltophilia R551-3 osmosensitive K+ channel signal transduction histidine kinase YP_002026676.1 336912 R 391008 CDS YP_002026677.1 194364067 6478074 complement(339624..340274) 1 NC_011071.1 KEGG: xcv:XCV0810 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 340274 6478074 Smal_0289 Stenotrophomonas maltophilia R551-3 potassium-transporting ATPase subunit C YP_002026677.1 339624 R 391008 CDS YP_002026678.1 194364068 6478075 complement(340271..342328) 1 NC_011071.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 342328 6478075 Smal_0290 Stenotrophomonas maltophilia R551-3 potassium-transporting ATPase subunit B YP_002026678.1 340271 R 391008 CDS YP_002026679.1 194364069 6478076 complement(342339..344048) 1 NC_011071.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 344048 6478076 Smal_0291 Stenotrophomonas maltophilia R551-3 potassium-transporting ATPase subunit A YP_002026679.1 342339 R 391008 CDS YP_002026680.1 194364070 6478077 complement(344061..344153) 1 NC_011071.1 KEGG: xom:XOO_3625 hypothetical protein; hypothetical protein 344153 6478077 Smal_0292 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026680.1 344061 R 391008 CDS YP_002026681.1 194364071 6478078 complement(344373..345035) 1 NC_011071.1 KEGG: xom:XOO_0473 hypothetical protein; hypothetical protein 345035 6478078 Smal_0293 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026681.1 344373 R 391008 CDS YP_002026682.1 194364072 6478079 complement(345055..345714) 1 NC_011071.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 345714 pyrE 6478079 pyrE Stenotrophomonas maltophilia R551-3 orotate phosphoribosyltransferase YP_002026682.1 345055 R 391008 CDS YP_002026683.1 194364073 6478080 345877..346677 1 NC_011071.1 KEGG: xcb:XC_3930 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 346677 6478080 Smal_0295 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease III Xth YP_002026683.1 345877 D 391008 CDS YP_002026684.1 194364074 6478081 346674..348047 1 NC_011071.1 KEGG: bba:Bd0333 AmpG protein; AmpG protein 348047 6478081 Smal_0296 Stenotrophomonas maltophilia R551-3 AmpG protein YP_002026684.1 346674 D 391008 CDS YP_002026685.1 194364075 6478082 348126..348356 1 NC_011071.1 KEGG: xac:XAC3900 hypothetical protein; hypothetical protein 348356 6478082 Smal_0297 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026685.1 348126 D 391008 CDS YP_002026686.1 194364076 6478083 complement(348463..349599) 1 NC_011071.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 349599 anmK 6478083 anmK Stenotrophomonas maltophilia R551-3 anhydro-N-acetylmuramic acid kinase YP_002026686.1 348463 R 391008 CDS YP_002026687.1 194364077 6478084 complement(349655..351127) 1 NC_011071.1 PFAM: Opacity-associated protein A; Peptidase M23; KEGG: xcb:XC_3926 hypothetical protein; peptidase M23 351127 6478084 Smal_0299 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002026687.1 349655 R 391008 CDS YP_002026688.1 194364078 6478085 351295..352506 1 NC_011071.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 352506 6478085 Smal_0300 Stenotrophomonas maltophilia R551-3 tyrosyl-tRNA synthetase YP_002026688.1 351295 D 391008 CDS YP_002026689.1 194364079 6478097 complement(364491..366206) 1 NC_011071.1 PFAM: peptidase M28; KEGG: xcb:XC_0024 hypothetical protein; peptidase M28 366206 6478097 Smal_0301 Stenotrophomonas maltophilia R551-3 peptidase M28 YP_002026689.1 364491 R 391008 CDS YP_002026690.1 194364080 6478098 complement(366293..366955) 1 NC_011071.1 KEGG: xcb:XC_0023 hypothetical protein; hypothetical protein 366955 6478098 Smal_0302 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026690.1 366293 R 391008 CDS YP_002026691.1 194364081 6478099 367051..368349 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xom:XOO_4323 hypothetical protein; peptidase M23 368349 6478099 Smal_0303 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002026691.1 367051 D 391008 CDS YP_002026692.1 194364082 6478100 368458..369954 1 NC_011071.1 KEGG: xom:XOO_4322 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 369954 6478100 Smal_0304 Stenotrophomonas maltophilia R551-3 carboxyl-terminal protease YP_002026692.1 368458 D 391008 CDS YP_002026693.1 194364083 6478101 complement(370064..370756) 1 NC_011071.1 PFAM: Rhomboid family protein; KEGG: xcb:XC_0018 hypothetical protein; rhomboid family protein 370756 6478101 Smal_0305 Stenotrophomonas maltophilia R551-3 rhomboid family protein YP_002026693.1 370064 R 391008 CDS YP_002026694.1 194364084 6478102 370983..372332 1 NC_011071.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: xcb:XC_0017 outer membrane protein; aromatic hydrocarbon degradation membrane protein 372332 6478102 Smal_0306 Stenotrophomonas maltophilia R551-3 aromatic hydrocarbon degradation membrane protein YP_002026694.1 370983 D 391008 CDS YP_002026695.1 194364085 6478103 372418..373017 1 NC_011071.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pmy:Pmen_1541 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 373017 6478103 Smal_0307 Stenotrophomonas maltophilia R551-3 nicotinamide mononucleotide transporter PnuC YP_002026695.1 372418 D 391008 CDS YP_002026696.1 194364086 6478104 complement(373136..376393) 1 NC_011071.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 376393 6478104 Smal_0308 Stenotrophomonas maltophilia R551-3 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002026696.1 373136 R 391008 CDS YP_002026697.1 194364087 6478105 376629..377105 1 NC_011071.1 KEGG: xcv:XCV4007 hypothetical protein; hypothetical protein 377105 6478105 Smal_0309 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026697.1 376629 D 391008 CDS YP_002026698.1 194364088 6478106 377117..378079 1 NC_011071.1 KEGG: xac:XAC3888 cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II 378079 6478106 Smal_0310 Stenotrophomonas maltophilia R551-3 cytochrome c oxidase subunit II YP_002026698.1 377117 D 391008 CDS YP_002026699.1 194364089 6478107 378139..379746 1 NC_011071.1 KEGG: xac:XAC3887 cytochrome c oxidase subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 379746 6478107 Smal_0311 Stenotrophomonas maltophilia R551-3 cytochrome c oxidase subunit I YP_002026699.1 378139 D 391008 CDS YP_002026700.1 194364090 6478108 379755..379988 1 NC_011071.1 KEGG: xom:XOO_3918 hypothetical protein; hypothetical protein 379988 6478108 Smal_0312 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026700.1 379755 D 391008 CDS YP_002026701.1 194364091 6478109 379985..380575 1 NC_011071.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 380575 6478109 Smal_0313 Stenotrophomonas maltophilia R551-3 cytochrome C oxidase assembly protein YP_002026701.1 379985 D 391008 CDS YP_002026702.1 194364092 6478110 380590..381465 1 NC_011071.1 PFAM: cytochrome c oxidase subunit III; KEGG: xcb:XC_3901 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 381465 6478110 Smal_0314 Stenotrophomonas maltophilia R551-3 cytochrome c oxidase subunit III YP_002026702.1 380590 D 391008 CDS YP_002026703.1 194364093 6478111 complement(381486..381704) 1 NC_011071.1 KEGG: xcb:XC_3900 hypothetical protein; hypothetical protein 381704 6478111 Smal_0315 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026703.1 381486 R 391008 CDS YP_002026704.1 194364094 6478112 381762..382490 1 NC_011071.1 KEGG: xcv:XCV4000 hypothetical protein; hypothetical protein 382490 6478112 Smal_0316 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026704.1 381762 D 391008 CDS YP_002026705.1 194364095 6478113 382587..383156 1 NC_011071.1 KEGG: xac:XAC3881 hypothetical protein; hypothetical protein 383156 6478113 Smal_0317 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026705.1 382587 D 391008 CDS YP_002026706.1 194364096 6478114 383167..384330 1 NC_011071.1 PFAM: cytochrome oxidase assembly; KEGG: xac:XAC3880 hypothetical protein; cytochrome oxidase assembly 384330 6478114 Smal_0318 Stenotrophomonas maltophilia R551-3 cytochrome oxidase assembly YP_002026706.1 383167 D 391008 CDS YP_002026707.1 194364097 6478115 384335..385228 1 NC_011071.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 385228 6478115 Smal_0319 Stenotrophomonas maltophilia R551-3 protoheme IX farnesyltransferase YP_002026707.1 384335 D 391008 CDS YP_002026708.1 194364098 6478116 385420..386241 1 NC_011071.1 KEGG: mxa:MXAN_1009 putative lipoprotein; hypothetical protein 386241 6478116 Smal_0320 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026708.1 385420 D 391008 CDS YP_002026709.1 194364099 6478117 complement(386374..387345) 1 NC_011071.1 PFAM: Bile acid:sodium symporter; KEGG: xcb:XC_3894 hypothetical protein; bile acid:sodium symporter 387345 6478117 Smal_0321 Stenotrophomonas maltophilia R551-3 bile acid:sodium symporter YP_002026709.1 386374 R 391008 CDS YP_002026710.1 194364100 6478118 complement(387374..387874) 1 NC_011071.1 PFAM: protein of unknown function DUF442; KEGG: xcb:XC_3893 hypothetical protein; hypothetical protein 387874 6478118 Smal_0322 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026710.1 387374 R 391008 CDS YP_002026711.1 194364101 6478119 complement(387903..389642) 1 NC_011071.1 synthesizes RNA primers at the replication forks; DNA primase 389642 dnaG 6478119 dnaG Stenotrophomonas maltophilia R551-3 DNA primase YP_002026711.1 387903 R 391008 CDS YP_002026712.1 194364102 6478120 complement(389703..390647) 1 NC_011071.1 PFAM: ribonuclease BN; KEGG: xcv:XCV3993 putative ribonuclease BN; ribonuclease BN 390647 6478120 Smal_0324 Stenotrophomonas maltophilia R551-3 ribonuclease BN YP_002026712.1 389703 R 391008 CDS YP_002026713.1 194364103 6478121 complement(390751..391194) 1 NC_011071.1 KEGG: xac:XAC3873 hypothetical protein; hypothetical protein 391194 6478121 Smal_0325 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026713.1 390751 R 391008 CDS YP_002026714.1 194364104 6478122 complement(391327..391542) 1 NC_011071.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 391542 rpsU 6478122 rpsU Stenotrophomonas maltophilia R551-3 30S ribosomal protein S21 YP_002026714.1 391327 R 391008 CDS YP_002026715.1 194364105 6478123 391709..392734 1 NC_011071.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 392734 6478123 Smal_0327 Stenotrophomonas maltophilia R551-3 putative DNA-binding/iron metalloprotein/AP endonuclease YP_002026715.1 391709 D 391008 CDS YP_002026716.1 194364106 6478124 complement(392872..393537) 1 NC_011071.1 PFAM: protein of unknown function DUF1526; KEGG: pst:PSPTO_0149 hypothetical protein; hypothetical protein 393537 6478124 Smal_0328 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026716.1 392872 R 391008 CDS YP_002026717.1 194364107 6478125 394054..394407 1 NC_011071.1 TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase; dihydroneopterin aldolase 394407 6478125 Smal_0329 Stenotrophomonas maltophilia R551-3 dihydroneopterin aldolase YP_002026717.1 394054 D 391008 CDS YP_002026718.1 194364108 6478126 394466..395737 1 NC_011071.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mxa:MXAN_4113 mechanosensitive ion channel family protein; mechanosensitive ion channel MscS 395737 6478126 Smal_0330 Stenotrophomonas maltophilia R551-3 mechanosensitive ion channel MscS YP_002026718.1 394466 D 391008 CDS YP_002026719.1 194364109 6478127 395866..398040 1 NC_011071.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: xcb:XC_3886 beta-glucosidase; glycoside hydrolase family 3 398040 6478127 Smal_0331 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family 3 YP_002026719.1 395866 D 391008 CDS YP_002026720.1 194364110 6478128 398172..398708 1 NC_011071.1 KEGG: gvi:gsl1632 hypothetical protein; hypothetical protein 398708 6478128 Smal_0332 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026720.1 398172 D 391008 CDS YP_002026721.1 194364111 6478129 complement(398826..399989) 1 NC_011071.1 PFAM: glucose sorbosone dehydrogenase; KEGG: xcv:XCV3987 putative secreted protein; glucose sorbosone dehydrogenase 399989 6478129 Smal_0333 Stenotrophomonas maltophilia R551-3 glucose sorbosone dehydrogenase YP_002026721.1 398826 R 391008 CDS YP_002026722.1 194364112 6478130 400160..400612 1 NC_011071.1 PFAM: YiaAB two helix domain protein; KEGG: xcb:XC_3884 membrane protein; YiaAB two helix domain-containing protein 400612 6478130 Smal_0334 Stenotrophomonas maltophilia R551-3 YiaAB two helix domain-containing protein YP_002026722.1 400160 D 391008 CDS YP_002026723.1 194364113 6478131 complement(400665..400994) 1 NC_011071.1 KEGG: xcb:XC_3883 hypothetical protein; hypothetical protein 400994 6478131 Smal_0335 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026723.1 400665 R 391008 CDS YP_002026724.1 194364114 6478132 complement(401103..402404) 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: xcb:XC_3881 cationic amino acid transporter; amino acid permease-associated protein 402404 6478132 Smal_0336 Stenotrophomonas maltophilia R551-3 amino acid permease-associated protein YP_002026724.1 401103 R 391008 CDS YP_002026725.1 194364115 6478133 complement(402401..403162) 1 NC_011071.1 KEGG: xcb:XC_3880 hypothetical protein; hypothetical protein 403162 6478133 Smal_0337 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026725.1 402401 R 391008 CDS YP_002026726.1 194364116 6478208 complement(403178..404026) 1 NC_011071.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sdy:SDY_2751 putative DNA-binding transcriptional regulator; RpiR family transcriptional regulator 404026 6478208 Smal_0338 Stenotrophomonas maltophilia R551-3 RpiR family transcriptional regulator YP_002026726.1 403178 R 391008 CDS YP_002026727.1 194364117 6478209 complement(404448..405542) 1 NC_011071.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xcv:XCV3980 putative chloromuconate cycloisomerase; mandelate racemase/muconate lactonizing protein 405542 6478209 Smal_0339 Stenotrophomonas maltophilia R551-3 mandelate racemase/muconate lactonizing protein YP_002026727.1 404448 R 391008 CDS YP_002026728.1 194364118 6478210 complement(405539..406978) 1 NC_011071.1 PFAM: NLP/P60 protein; KEGG: xcv:XCV3979 hypothetical protein; NLP/P60 protein 406978 6478210 Smal_0340 Stenotrophomonas maltophilia R551-3 NLP/P60 protein YP_002026728.1 405539 R 391008 CDS YP_002026729.1 194364119 6478211 407240..408601 1 NC_011071.1 PFAM: transglutaminase domain protein; KEGG: bfs:BF2762 putative lipoprotein; transglutaminase domain-containing protein 408601 6478211 Smal_0341 Stenotrophomonas maltophilia R551-3 transglutaminase domain-containing protein YP_002026729.1 407240 D 391008 CDS YP_002026730.1 194364120 6478212 408653..411676 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_3060 TonB-dependent receptor, plug; TonB-dependent receptor plug 411676 6478212 Smal_0342 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002026730.1 408653 D 391008 CDS YP_002026731.1 194364121 6478213 411732..413285 1 NC_011071.1 PFAM: beta-lactamase; KEGG: pat:Patl_4159 beta-lactamase; beta-lactamase 413285 6478213 Smal_0343 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002026731.1 411732 D 391008 CDS YP_002026732.1 194364122 6478214 413218..413931 1 NC_011071.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: xcb:XC_3873 D-alanyl-D-alanine dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase 413931 6478214 Smal_0344 Stenotrophomonas maltophilia R551-3 peptidase M15D vanX D-ala-D-ala dipeptidase YP_002026732.1 413218 D 391008 CDS YP_002026733.1 194364123 6478215 414164..414535 1 NC_011071.1 KEGG: xcb:XC_3871 hypothetical protein; hypothetical protein 414535 6478215 Smal_0345 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026733.1 414164 D 391008 CDS YP_002026734.1 194364124 6478216 414768..415178 1 NC_011071.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: xac:XAC3856 hypothetical protein; calcium-binding domain-containing protein 415178 6478216 Smal_0346 Stenotrophomonas maltophilia R551-3 calcium-binding domain-containing protein YP_002026734.1 414768 D 391008 CDS YP_002026735.1 194364125 6478217 415274..416026 1 NC_011071.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcc:XCC3796 hydrolase, haloacid delahogenase-like family; haloacid dehalogenase domain-containing protein hydrolase 416026 6478217 Smal_0347 Stenotrophomonas maltophilia R551-3 haloacid dehalogenase domain-containing protein hydrolase YP_002026735.1 415274 D 391008 CDS YP_002026736.1 194364126 6478218 416058..416546 1 NC_011071.1 KEGG: xcv:XCV3969 putative secreted protein; hypothetical protein 416546 6478218 Smal_0348 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026736.1 416058 D 391008 CDS YP_002026737.1 194364127 6478219 416709..418073 1 NC_011071.1 PFAM: protein of unknown function DUF1338; KEGG: xcc:XCC3793 hypothetical protein; hypothetical protein 418073 6478219 Smal_0349 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026737.1 416709 D 391008 CDS YP_002026738.1 194364128 6478220 complement(418193..419707) 1 NC_011071.1 KEGG: xcb:XC_0550 CoA tranferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 419707 6478220 Smal_0350 Stenotrophomonas maltophilia R551-3 succinate CoA transferase YP_002026738.1 418193 R 391008 CDS YP_002026739.1 194364129 6478221 420094..422889 1 NC_011071.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: xac:XAC0550 glutamine synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 422889 6478221 Smal_0351 Stenotrophomonas maltophilia R551-3 (glutamate--ammonia-ligase) adenylyltransferase YP_002026739.1 420094 D 391008 CDS YP_002026740.1 194364130 6478222 complement(423194..423754) 1 NC_011071.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: xac:XAC0551 hypothetical protein; hypothetical protein 423754 6478222 Smal_0352 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026740.1 423194 R 391008 CDS YP_002026741.1 194364131 6478223 complement(423830..424345) 1 NC_011071.1 KEGG: xcv:XCV0584 hypothetical protein; hypothetical protein 424345 6478223 Smal_0353 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026741.1 423830 R 391008 CDS YP_002026742.1 194364132 6478224 complement(424378..424881) 1 NC_011071.1 KEGG: xcc:XCC3602 hypothetical protein; hypothetical protein 424881 6478224 Smal_0354 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026742.1 424378 R 391008 CDS YP_002026743.1 194364133 6478225 complement(424901..425752) 1 NC_011071.1 KEGG: xcv:XCV0585 hypothetical protein; hypothetical protein 425752 6478225 Smal_0355 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026743.1 424901 R 391008 CDS YP_002026744.1 194364134 6478226 complement(425801..426028) 1 NC_011071.1 hypothetical protein 426028 6478226 Smal_0356 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026744.1 425801 R 391008 CDS YP_002026745.1 194364135 6478227 complement(426228..427193) 1 NC_011071.1 PFAM: protein of unknown function DUF1022; KEGG: xcv:XCV0586 hypothetical protein; hypothetical protein 427193 6478227 Smal_0357 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026745.1 426228 R 391008 CDS YP_002026746.1 194364136 6478228 427315..427905 1 NC_011071.1 PFAM: nitroreductase; KEGG: xcb:XC_0568 hypothetical protein; hypothetical protein 427905 6478228 Smal_0358 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026746.1 427315 D 391008 CDS YP_002026747.1 194364137 6478229 427981..428688 1 NC_011071.1 PFAM: YceI family protein; KEGG: xac:XAC0555 hypothetical protein; hypothetical protein 428688 6478229 Smal_0359 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026747.1 427981 D 391008 CDS YP_002026748.1 194364138 6478230 complement(429204..429605) 1 NC_011071.1 hypothetical protein 429605 6478230 Smal_0360 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026748.1 429204 R 391008 CDS YP_002026749.1 194364139 6478231 429842..430786 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpe:BP3519 transposase; integrase catalytic subunit 430786 6478231 Smal_0361 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002026749.1 429842 D 391008 CDS YP_002026750.1 194364140 6478232 430845..431678 1 NC_011071.1 hypothetical protein 431678 6478232 Smal_0362 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026750.1 430845 D 391008 CDS YP_002026751.1 194364141 6478233 complement(431753..432550) 1 NC_011071.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: xac:XAC0558 iron utilization protein; Siderophore-interacting protein 432550 6478233 Smal_0363 Stenotrophomonas maltophilia R551-3 Siderophore-interacting protein YP_002026751.1 431753 R 391008 CDS YP_002026752.1 194364142 6478234 complement(432610..433170) 1 NC_011071.1 PFAM: transcriptional regulator PadR family protein; KEGG: xcb:XC_0571 hypothetical protein; PadR-like family transcriptional regulator 433170 6478234 Smal_0364 Stenotrophomonas maltophilia R551-3 PadR-like family transcriptional regulator YP_002026752.1 432610 R 391008 CDS YP_002026753.1 194364143 6478235 433739..436426 1 NC_011071.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 436426 aceE 6478235 aceE Stenotrophomonas maltophilia R551-3 pyruvate dehydrogenase subunit E1 YP_002026753.1 433739 D 391008 CDS YP_002026754.1 194364144 6478236 436501..439539 1 NC_011071.1 PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shl:Shal_2181 type III restriction protein res subunit; type III restriction protein res subunit 439539 6478236 Smal_0366 Stenotrophomonas maltophilia R551-3 type III restriction protein res subunit YP_002026754.1 436501 D 391008 CDS YP_002026755.1 194364145 6478237 complement(439638..440006) 1 NC_011071.1 hypothetical protein 440006 6478237 Smal_0367 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026755.1 439638 R 391008 CDS YP_002026756.1 194364146 6478238 complement(440459..441037) 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: xfn:XfasM23_0009 TonB family protein; TonB family protein 441037 6478238 Smal_0368 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002026756.1 440459 R 391008 CDS YP_002026757.1 194364147 6478239 complement(441159..441806) 1 NC_011071.1 KEGG: she:Shewmr4_1721 hypothetical protein; hypothetical protein 441806 6478239 Smal_0369 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026757.1 441159 R 391008 CDS YP_002026758.1 194364148 6478240 complement(442089..442187) 1 NC_011071.1 hypothetical protein 442187 6478240 Smal_0370 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026758.1 442089 R 391008 CDS YP_002026759.1 194364149 6478241 442710..443714 1 NC_011071.1 KEGG: hha:Hhal_1283 transcriptional regulator-like protein; transcriptional regulator-like protein 443714 6478241 Smal_0371 Stenotrophomonas maltophilia R551-3 transcriptional regulator-like protein YP_002026759.1 442710 D 391008 CDS YP_002026760.1 194364150 6478242 443803..445566 1 NC_011071.1 KEGG: pap:PSPA7_6053 hypothetical protein; hypothetical protein 445566 6478242 Smal_0372 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026760.1 443803 D 391008 CDS YP_002026761.1 194364151 6478243 445563..447776 1 NC_011071.1 KEGG: pap:PSPA7_6054 hypothetical protein; hypothetical protein 447776 6478243 Smal_0373 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026761.1 445563 D 391008 CDS YP_002026762.1 194364152 6478244 447773..449638 1 NC_011071.1 KEGG: pap:PSPA7_6055 hypothetical protein; hypothetical protein 449638 6478244 Smal_0374 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026762.1 447773 D 391008 CDS YP_002026763.1 194364153 6478245 450169..451359 1 NC_011071.1 KEGG: rpa:RPA2213 hypothetical protein; hypothetical protein 451359 6478245 Smal_0375 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026763.1 450169 D 391008 CDS YP_002026764.1 194364154 6478246 451356..453194 1 NC_011071.1 KEGG: bxe:Bxe_A0848 hypothetical protein; hypothetical protein 453194 6478246 Smal_0376 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026764.1 451356 D 391008 CDS YP_002026765.1 194364155 6478247 453194..456406 1 NC_011071.1 PFAM: helicase domain protein; KEGG: bxe:Bxe_A0849 hypothetical protein; helicase domain-containing protein 456406 6478247 Smal_0377 Stenotrophomonas maltophilia R551-3 helicase domain-containing protein YP_002026765.1 453194 D 391008 CDS YP_002026766.1 194364156 6478248 complement(456460..457752) 1 NC_011071.1 KEGG: xcc:XCC1056 hypothetical protein; hypothetical protein 457752 6478248 Smal_0378 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026766.1 456460 R 391008 CDS YP_002026767.1 194364157 6478249 complement(457780..458640) 1 NC_011071.1 KEGG: xcb:XC_4270 hypothetical protein; hypothetical protein 458640 6478249 Smal_0379 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026767.1 457780 R 391008 CDS YP_002026768.1 194364158 6478250 458860..459786 1 NC_011071.1 KEGG: xcc:XCC1902 hypothetical protein; hypothetical protein 459786 6478250 Smal_0380 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026768.1 458860 D 391008 CDS YP_002026769.1 194364159 6478251 459952..461097 1 NC_011071.1 KEGG: spe:Spro_0979 hypothetical protein; hypothetical protein 461097 6478251 Smal_0381 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026769.1 459952 D 391008 CDS YP_002026770.1 194364160 6478252 461241..461816 1 NC_011071.1 KEGG: xcv:XCV1271 putative secreted protein; hypothetical protein 461816 6478252 Smal_0382 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026770.1 461241 D 391008 CDS YP_002026771.1 194364161 6478253 461894..462469 1 NC_011071.1 KEGG: xcv:XCV1271 putative secreted protein; hypothetical protein 462469 6478253 Smal_0383 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026771.1 461894 D 391008 CDS YP_002026772.1 194364162 6478254 462510..463577 1 NC_011071.1 KEGG: xcb:XC_3104 hypothetical protein; hypothetical protein 463577 6478254 Smal_0384 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026772.1 462510 D 391008 CDS YP_002026773.1 194364163 6478255 complement(463641..464057) 1 NC_011071.1 KEGG: xcc:XCC1056 hypothetical protein; hypothetical protein 464057 6478255 Smal_0385 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026773.1 463641 R 391008 CDS YP_002026774.1 194364164 6478256 complement(464133..464612) 1 NC_011071.1 KEGG: ccr:CC_0890 hypothetical protein; hypothetical protein 464612 6478256 Smal_0386 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026774.1 464133 R 391008 CDS YP_002026775.1 194364165 6478257 464835..465644 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_1933 putative arylesterase; alpha/beta hydrolase fold domain-containing protein 465644 6478257 Smal_0387 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002026775.1 464835 D 391008 CDS YP_002026776.1 194364166 6478258 465764..466714 1 NC_011071.1 KEGG: plu:plu4879 hypothetical protein; hypothetical protein 466714 6478258 Smal_0388 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026776.1 465764 D 391008 CDS YP_002026777.1 194364167 6478259 466959..467576 1 NC_011071.1 hypothetical protein 467576 6478259 Smal_0389 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026777.1 466959 D 391008 CDS YP_002026778.1 194364168 6478260 467606..468265 1 NC_011071.1 hypothetical protein 468265 6478260 Smal_0390 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026778.1 467606 D 391008 CDS YP_002026779.1 194364169 6478261 468400..469368 1 NC_011071.1 PFAM: polysaccharide deacetylase; KEGG: aba:Acid345_1565 polysaccharide deacetylase; polysaccharide deacetylase 469368 6478261 Smal_0391 Stenotrophomonas maltophilia R551-3 polysaccharide deacetylase YP_002026779.1 468400 D 391008 CDS YP_002026780.1 194364170 6478262 complement(469372..470214) 1 NC_011071.1 KEGG: xcv:XCV0651 hypothetical protein; hypothetical protein 470214 6478262 Smal_0392 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026780.1 469372 R 391008 CDS YP_002026781.1 194364171 6478263 complement(470669..471331) 1 NC_011071.1 hypothetical protein 471331 6478263 Smal_0393 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026781.1 470669 R 391008 CDS YP_002026782.1 194364172 6478264 complement(471443..471859) 1 NC_011071.1 KEGG: pcr:Pcryo_0856 hypothetical protein; hypothetical protein 471859 6478264 Smal_0394 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026782.1 471443 R 391008 CDS YP_002026783.1 194364173 6478265 471950..472234 1 NC_011071.1 KEGG: xcb:XC_0620 hypothetical protein; hypothetical protein 472234 6478265 Smal_0395 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026783.1 471950 D 391008 CDS YP_002026784.1 194364174 6478266 complement(472323..473297) 1 NC_011071.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcb:XC_4064 heavy metal transporter; cation diffusion facilitator family transporter 473297 6478266 Smal_0396 Stenotrophomonas maltophilia R551-3 cation diffusion facilitator family transporter YP_002026784.1 472323 R 391008 CDS YP_002026785.1 194364175 6478267 473346..473630 1 NC_011071.1 PFAM: protein of unknown function DUF156; KEGG: cph:Cpha266_2130 protein of unknown function DUF156; hypothetical protein 473630 6478267 Smal_0397 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026785.1 473346 D 391008 CDS YP_002026786.1 194364176 6478268 complement(474092..474466) 1 NC_011071.1 KEGG: xcv:XCV0283 hypothetical protein; hypothetical protein 474466 6478268 Smal_0398 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026786.1 474092 R 391008 CDS YP_002026787.1 194364177 6478269 474536..475861 1 NC_011071.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: xom:XOO_4133 nitrile hydratase activator; cobalamin synthesis protein P47K 475861 6478269 Smal_0399 Stenotrophomonas maltophilia R551-3 cobalamin synthesis protein P47K YP_002026787.1 474536 D 391008 CDS YP_002026788.1 194364178 6478270 complement(475966..477573) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cti:RALTA_B0293 putative ABC transporter ATP-binding protein; ABC transporter-like protein 477573 6478270 Smal_0400 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026788.1 475966 R 391008 CDS YP_002026789.1 194364179 6478271 complement(477814..478713) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A5921 transcriptional regulator, LysR family; LysR family transcriptional regulator 478713 6478271 Smal_0401 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026789.1 477814 R 391008 CDS YP_002026790.1 194364180 6478272 478941..480119 1 NC_011071.1 PFAM: beta-lactamase; KEGG: bcm:Bcenmc03_4045 beta-lactamase; beta-lactamase 480119 6478272 Smal_0402 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002026790.1 478941 D 391008 CDS YP_002026791.1 194364181 6478273 480116..481300 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_2194 major facilitator superfamily MFS_1; major facilitator superfamily protein 481300 6478273 Smal_0403 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026791.1 480116 D 391008 CDS YP_002026792.1 194364182 6478274 complement(481619..483235) 1 NC_011071.1 PFAM: EAL domain protein; KEGG: swi:Swit_2925 EAL domain protein; EAL domain-containing protein 483235 6478274 Smal_0404 Stenotrophomonas maltophilia R551-3 EAL domain-containing protein YP_002026792.1 481619 R 391008 CDS YP_002026793.1 194364183 6478275 483465..484838 1 NC_011071.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 484838 6478275 Smal_0405 Stenotrophomonas maltophilia R551-3 D-alanine/D-serine/glycine permease YP_002026793.1 483465 D 391008 CDS YP_002026794.1 194364184 6478276 485157..485933 1 NC_011071.1 PFAM: Lytic transglycosylase catalytic; KEGG: xfm:Xfasm12_1946 soluble lytic murein transglycosylase precursor; Lytic transglycosylase 485933 6478276 Smal_0406 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002026794.1 485157 D 391008 CDS YP_002026795.1 194364185 6478277 complement(486028..487548) 1 NC_011071.1 KEGG: cak:Caul_4326 tetratricopeptide TPR_4; hypothetical protein 487548 6478277 Smal_0407 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026795.1 486028 R 391008 CDS YP_002026796.1 194364186 6478278 487716..489797 1 NC_011071.1 PFAM: NHL repeat containing protein; SMP-30/Gluconolaconase/LRE domain protein; KEGG: ote:Oter_2854 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 489797 6478278 Smal_0408 Stenotrophomonas maltophilia R551-3 SMP-30/gluconolaconase/LRE domain-containing protein YP_002026796.1 487716 D 391008 CDS YP_002026797.1 194364187 6478279 complement(489775..490182) 1 NC_011071.1 PFAM: DGPFAETKE family protein; KEGG: xcb:XC_3733 hypothetical protein; DGPFAETKE family protein 490182 6478279 Smal_0409 Stenotrophomonas maltophilia R551-3 DGPFAETKE family protein YP_002026797.1 489775 R 391008 CDS YP_002026798.1 194364188 6478280 490914..491327 1 NC_011071.1 PFAM: DGPFAETKE family protein; KEGG: bvi:Bcep1808_3442 DGPFAETKE family protein; DGPFAETKE family protein 491327 6478280 Smal_0410 Stenotrophomonas maltophilia R551-3 DGPFAETKE family protein YP_002026798.1 490914 D 391008 CDS YP_002026799.1 194364189 6478281 491397..491819 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpe:RPE_4736 glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase 491819 6478281 Smal_0411 Stenotrophomonas maltophilia R551-3 3-demethylubiquinone-9 3-methyltransferase YP_002026799.1 491397 D 391008 CDS YP_002026800.1 194364190 6478282 491854..492264 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0020 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 492264 6478282 Smal_0412 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002026800.1 491854 D 391008 CDS YP_002026801.1 194364191 6478283 492288..492644 1 NC_011071.1 PFAM: protein of unknown function DUF1428; KEGG: rpe:RPE_4844 protein of unknown function DUF1428; hypothetical protein 492644 6478283 Smal_0413 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026801.1 492288 D 391008 CDS YP_002026802.1 194364192 6478284 492690..493952 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bmu:Bmul_4925 putative RNA polymerase, sigma-24 subunit, ECF subfamily; putative ECF subfamily RNA polymerase sigma-24 subunit 493952 6478284 Smal_0414 Stenotrophomonas maltophilia R551-3 putative ECF subfamily RNA polymerase sigma-24 subunit YP_002026802.1 492690 D 391008 CDS YP_002026803.1 194364193 6478285 494060..495256 1 NC_011071.1 KEGG: rme:Rmet_5702 hypothetical protein; hypothetical protein 495256 6478285 Smal_0415 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026803.1 494060 D 391008 CDS YP_002026804.1 194364194 6478286 495247..496347 1 NC_011071.1 KEGG: rme:Rmet_5701 hypothetical protein; hypothetical protein 496347 6478286 Smal_0416 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026804.1 495247 D 391008 CDS YP_002026805.1 194364195 6478287 496482..497159 1 NC_011071.1 KEGG: dac:Daci_1236 hypothetical protein; hypothetical protein 497159 6478287 Smal_0417 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026805.1 496482 D 391008 CDS YP_002026806.1 194364196 6478288 497176..498831 1 NC_011071.1 KEGG: dac:Daci_1237 hypothetical protein; hypothetical protein 498831 6478288 Smal_0418 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026806.1 497176 D 391008 CDS YP_002026807.1 194364197 6478289 499213..500862 1 NC_011071.1 PFAM: peptidase M28; KEGG: xac:XAC0615 aminopeptidase; peptidase M28 500862 6478289 Smal_0419 Stenotrophomonas maltophilia R551-3 peptidase M28 YP_002026807.1 499213 D 391008 CDS YP_002026808.1 194364198 6478372 501075..502334 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: xcv:XCV3840 putative two-component system sensor kinase; signal transduction histidine kinase LytS 502334 6478372 Smal_0420 Stenotrophomonas maltophilia R551-3 signal transduction histidine kinase LytS YP_002026808.1 501075 D 391008 CDS YP_002026809.1 194364199 6478373 502324..503094 1 NC_011071.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: xcb:XC_3747 transcriptional regulator protein; LytTR family two component transcriptional regulator 503094 6478373 Smal_0421 Stenotrophomonas maltophilia R551-3 LytTR family two component transcriptional regulator YP_002026809.1 502324 D 391008 CDS YP_002026810.1 194364200 6478374 503128..503472 1 NC_011071.1 KEGG: xcv:XCV3838 putative secreted protein; hypothetical protein 503472 6478374 Smal_0422 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026810.1 503128 D 391008 CDS YP_002026811.1 194364201 6478375 complement(503512..504126) 1 NC_011071.1 KEGG: xcb:XC_3744 hypothetical protein; hypothetical protein 504126 6478375 Smal_0423 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026811.1 503512 R 391008 CDS YP_002026812.1 194364202 6478376 504436..505365 1 NC_011071.1 KEGG: xcv:XCV3835 hypothetical protein; hypothetical protein 505365 6478376 Smal_0424 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026812.1 504436 D 391008 CDS YP_002026813.1 194364203 6478377 complement(505477..506064) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: eca:ECA1819 TetR-family transcriptional regulator; TetR family transcriptional regulator 506064 6478377 Smal_0425 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002026813.1 505477 R 391008 CDS YP_002026814.1 194364204 6478378 506198..507412 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1818 putative transporter; major facilitator superfamily protein 507412 6478378 Smal_0426 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026814.1 506198 D 391008 CDS YP_002026815.1 194364205 6478379 507409..508581 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1817 probable transporter; major facilitator superfamily protein 508581 6478379 Smal_0427 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002026815.1 507409 D 391008 CDS YP_002026816.1 194364206 6478380 complement(508713..510824) 1 NC_011071.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcb:XC_3742 metallopeptidase; endothelin-converting enzyme 1 510824 6478380 Smal_0428 Stenotrophomonas maltophilia R551-3 endothelin-converting enzyme 1 YP_002026816.1 508713 R 391008 CDS YP_002026817.1 194364207 6478381 511001..514063 1 NC_011071.1 KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 514063 6478381 Smal_0429 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002026817.1 511001 D 391008 CDS YP_002026818.1 194364208 6478382 complement(514157..515038) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3828 transcriptional regulator, LysR family; LysR family transcriptional regulator 515038 6478382 Smal_0430 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026818.1 514157 R 391008 CDS YP_002026819.1 194364209 6478383 515136..515546 1 NC_011071.1 PFAM: DoxX family protein; KEGG: xac:XAC3707 hypothetical protein; DoxX family protein 515546 6478383 Smal_0431 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002026819.1 515136 D 391008 CDS YP_002026820.1 194364210 6478384 515578..516366 1 NC_011071.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: xom:XOO_0607 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 516366 6478384 Smal_0432 Stenotrophomonas maltophilia R551-3 extradiol ring-cleavage dioxygenase class III protein subunit B YP_002026820.1 515578 D 391008 CDS YP_002026821.1 194364211 6478385 516484..518133 1 NC_011071.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: xoo:XOO0675 Na+:H+ antiporter; Na+/H+ antiporter 518133 6478385 Smal_0433 Stenotrophomonas maltophilia R551-3 Na+/H+ antiporter YP_002026821.1 516484 D 391008 CDS YP_002026822.1 194364212 6478386 complement(518201..518449) 1 NC_011071.1 KEGG: xcb:XC_3729 hypothetical protein; hypothetical protein 518449 6478386 Smal_0434 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026822.1 518201 R 391008 CDS YP_002026823.1 194364213 6478387 518539..519081 1 NC_011071.1 KEGG: xcb:XC_3728 hypothetical protein; hypothetical protein 519081 6478387 Smal_0435 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026823.1 518539 D 391008 CDS YP_002026824.1 194364214 6478388 complement(519163..519438) 1 NC_011071.1 KEGG: xom:XOO_0622 hypothetical protein; hypothetical protein 519438 6478388 Smal_0436 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026824.1 519163 R 391008 CDS YP_002026825.1 194364215 6478389 complement(519452..519964) 1 NC_011071.1 KEGG: xcv:XCV3816 hypothetical protein; hypothetical protein 519964 6478389 Smal_0437 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026825.1 519452 R 391008 CDS YP_002026826.1 194364216 6478390 complement(520096..521052) 1 NC_011071.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 521052 motB 6478390 motB Stenotrophomonas maltophilia R551-3 flagellar motor protein MotB YP_002026826.1 520096 R 391008 CDS YP_002026827.1 194364217 6478391 complement(521056..521910) 1 NC_011071.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 521910 6478391 Smal_0439 Stenotrophomonas maltophilia R551-3 flagellar motor protein MotA YP_002026827.1 521056 R 391008 CDS YP_002026828.1 194364218 6478392 complement(522002..522469) 1 NC_011071.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 522469 6478392 Smal_0440 Stenotrophomonas maltophilia R551-3 methionine sulfoxide reductase B YP_002026828.1 522002 R 391008 CDS YP_002026829.1 194364219 6478393 522610..522978 1 NC_011071.1 KEGG: xcb:XC_3721 hypothetical protein; hypothetical protein 522978 6478393 Smal_0441 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026829.1 522610 D 391008 CDS YP_002026830.1 194364220 6478394 523166..523318 1 NC_011071.1 KEGG: ddi:DDBDRAFT_0204126 hypothetical protein; hypothetical protein 523318 6478394 Smal_0442 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026830.1 523166 D 391008 CDS YP_002026831.1 194364221 6478395 complement(523436..523915) 1 NC_011071.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: xcv:XCV3810 leucine-responsive regulatory protein, AsnC family; AsnC family transcriptional regulator 523915 6478395 Smal_0443 Stenotrophomonas maltophilia R551-3 AsnC family transcriptional regulator YP_002026831.1 523436 R 391008 CDS YP_002026832.1 194364222 6478396 524065..525369 1 NC_011071.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_6038 D-amino acid dehydrogenase small subunit; D-amino-acid dehydrogenase 525369 6478396 Smal_0444 Stenotrophomonas maltophilia R551-3 D-amino-acid dehydrogenase YP_002026832.1 524065 D 391008 CDS YP_002026833.1 194364223 6478397 525348..526415 1 NC_011071.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 526415 alr 6478397 alr Stenotrophomonas maltophilia R551-3 alanine racemase YP_002026833.1 525348 D 391008 CDS YP_002026834.1 194364224 6478398 complement(526518..527081) 1 NC_011071.1 KEGG: xac:XAC3686 hypothetical protein; hypothetical protein 527081 6478398 Smal_0446 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026834.1 526518 R 391008 CDS YP_002026835.1 194364225 6478399 527326..529314 1 NC_011071.1 KEGG: xcv:XCV3804 two-component system sensor histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 529314 6478399 Smal_0447 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor hybrid histidine kinase YP_002026835.1 527326 D 391008 CDS YP_002026836.1 194364226 6478400 529358..529651 1 NC_011071.1 KEGG: xcb:XC_3713 hypothetical protein; hypothetical protein 529651 6478400 Smal_0448 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026836.1 529358 D 391008 CDS YP_002026837.1 194364227 6478401 complement(529737..530000) 1 NC_011071.1 KEGG: xcb:XC_3711 hypothetical protein; hypothetical protein 530000 6478401 Smal_0449 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026837.1 529737 R 391008 CDS YP_002026838.1 194364228 6478402 530159..531229 1 NC_011071.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: xac:XAC3679 ribosomal RNA small subunit methyltransferase C; methyltransferase small 531229 6478402 Smal_0450 Stenotrophomonas maltophilia R551-3 methyltransferase small YP_002026838.1 530159 D 391008 CDS YP_002026839.1 194364229 6478403 531226..531927 1 NC_011071.1 PFAM: pseudouridine synthase; KEGG: xcb:XC_3709 ribosomal small subunit pseudouridylate synthase; pseudouridine synthase 531927 6478403 Smal_0451 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002026839.1 531226 D 391008 CDS YP_002026840.1 194364230 6478404 531924..532607 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcb:XC_3708 hydrolase; HAD-superfamily hydrolase 532607 6478404 Smal_0452 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002026840.1 531924 D 391008 CDS YP_002026841.1 194364231 6478405 complement(532735..533943) 1 NC_011071.1 PFAM: Beta-ketoacyl synthase; KEGG: xcb:XC_3652 beta-ketoacyl-[ACP] synthase I; beta-ketoacyl synthase 533943 6478405 Smal_0453 Stenotrophomonas maltophilia R551-3 beta-ketoacyl synthase YP_002026841.1 532735 R 391008 CDS YP_002026842.1 194364232 6478406 complement(533943..534458) 1 NC_011071.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 534458 6478406 Smal_0454 Stenotrophomonas maltophilia R551-3 3-hydroxydecanoyl-ACP dehydratase YP_002026842.1 533943 R 391008 CDS YP_002026843.1 194364233 6478407 534649..535719 1 NC_011071.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 535719 6478407 Smal_0455 Stenotrophomonas maltophilia R551-3 DNA polymerase IV YP_002026843.1 534649 D 391008 CDS YP_002026844.1 194364234 6478408 complement(535982..536893) 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: pfo:PflO1_4474 beta-lactamase-like; beta-lactamase domain-containing protein 536893 6478408 Smal_0456 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002026844.1 535982 R 391008 CDS YP_002026845.1 194364235 6478409 complement(536979..537617) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bte:BTH_I2861 hypothetical protein; NAD-dependent epimerase/dehydratase 537617 6478409 Smal_0457 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002026845.1 536979 R 391008 CDS YP_002026846.1 194364236 6478410 537726..538655 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB3251 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 538655 6478410 Smal_0458 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002026846.1 537726 D 391008 CDS YP_002026847.1 194364237 6478411 538652..539443 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dac:Daci_4070 methyltransferase type 11; type 11 methyltransferase 539443 6478411 Smal_0459 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002026847.1 538652 D 391008 CDS YP_002026848.1 194364238 6478412 539475..540164 1 NC_011071.1 TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcc:XCC0584 phosphoglycolate phosphatase; phosphoglycolate phosphatase 540164 6478412 Smal_0460 Stenotrophomonas maltophilia R551-3 phosphoglycolate phosphatase YP_002026848.1 539475 D 391008 CDS YP_002026849.1 194364239 6478413 complement(540306..542147) 1 NC_011071.1 TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1091 outer membrane receptor for transport of vitamin B; TonB-dependent vitamin B12 receptor 542147 6478413 Smal_0461 Stenotrophomonas maltophilia R551-3 TonB-dependent vitamin B12 receptor YP_002026849.1 540306 R 391008 CDS YP_002026850.1 194364240 6478414 542619..543197 1 NC_011071.1 PFAM: Phosphoglycerate mutase; KEGG: bbt:BBta_3134 putative alpha-ribazole phosphatase (anaerobic pathway of cobalamin biosynthesis, CobC); phosphoglycerate mutase 543197 6478414 Smal_0462 Stenotrophomonas maltophilia R551-3 phosphoglycerate mutase YP_002026850.1 542619 D 391008 CDS YP_002026851.1 194364241 6478415 complement(543282..543644) 1 NC_011071.1 PFAM: TfoX domain protein; KEGG: xcb:XC_3648 hypothetical protein; TfoX domain-containing protein 543644 6478415 Smal_0463 Stenotrophomonas maltophilia R551-3 TfoX domain-containing protein YP_002026851.1 543282 R 391008 CDS YP_002026852.1 194364242 6478416 complement(543641..544123) 1 NC_011071.1 PFAM: GAF domain protein; KEGG: xom:XOO_0696 hypothetical protein; putative GAF sensor protein 544123 6478416 Smal_0464 Stenotrophomonas maltophilia R551-3 putative GAF sensor protein YP_002026852.1 543641 R 391008 CDS YP_002026853.1 194364243 6478417 544192..544884 1 NC_011071.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 544884 bioD 6478417 bioD Stenotrophomonas maltophilia R551-3 dithiobiotin synthetase YP_002026853.1 544192 D 391008 CDS YP_002026854.1 194364244 6478418 complement(544961..546403) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cvi:CV_1900 probable transcriptional regulator; GntR family transcriptional regulator 546403 6478418 Smal_0466 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002026854.1 544961 R 391008 CDS YP_002026855.1 194364245 6478419 complement(546609..547346) 1 NC_011071.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: dac:Daci_3068 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 547346 6478419 Smal_0467 Stenotrophomonas maltophilia R551-3 peptide methionine sulfoxide reductase YP_002026855.1 546609 R 391008 CDS YP_002026856.1 194364246 6478420 complement(547361..549130) 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: rme:Rmet_1170 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane region 549130 6478420 Smal_0468 Stenotrophomonas maltophilia R551-3 cytochrome c biogenesis protein transmembrane region YP_002026856.1 547361 R 391008 CDS YP_002026857.1 194364247 6478421 complement(549133..549705) 1 NC_011071.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: nha:Nham_1330 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 549705 6478421 Smal_0469 Stenotrophomonas maltophilia R551-3 methionine-R-sulfoxide reductase YP_002026857.1 549133 R 391008 CDS YP_002026858.1 194364248 6478422 549850..550569 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpt:Bpet2466 two-component response regulator; winged helix family two component transcriptional regulator 550569 6478422 Smal_0470 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002026858.1 549850 D 391008 CDS YP_002026859.1 194364249 6478423 550566..552035 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bac:BamMC406_5549 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 552035 6478423 Smal_0471 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002026859.1 550566 D 391008 CDS YP_002026860.1 194364250 6478424 complement(552032..553378) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cvi:CV_0760 probable two-component sensor protein; integral membrane sensor signal transduction histidine kinase 553378 6478424 Smal_0472 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002026860.1 552032 R 391008 CDS YP_002026861.1 194364251 6478425 complement(553375..554064) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cvi:CV_0761 probable two-component response regulator; winged helix family two component transcriptional regulator 554064 6478425 Smal_0473 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002026861.1 553375 R 391008 CDS YP_002026862.1 194364252 6478426 554414..556315 1 NC_011071.1 PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: xcb:XC_2806 asparagine synthase; asparagine synthase 556315 6478426 Smal_0474 Stenotrophomonas maltophilia R551-3 asparagine synthase YP_002026862.1 554414 D 391008 CDS YP_002026863.1 194364253 6478427 complement(556763..557110) 1 NC_011071.1 KEGG: xac:XAC3615 hypothetical protein; hypothetical protein 557110 6478427 Smal_0475 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026863.1 556763 R 391008 CDS YP_002026864.1 194364254 6478428 complement(557227..557589) 1 NC_011071.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xom:XOO_0699 6-pyruvoyl tetrahydrobiopterin synthase; queuosine biosynthesis protein QueD 557589 6478428 Smal_0476 Stenotrophomonas maltophilia R551-3 queuosine biosynthesis protein QueD YP_002026864.1 557227 R 391008 CDS YP_002026865.1 194364255 6478429 557781..560420 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3613 TonB-dependent receptor; TonB-dependent receptor 560420 6478429 Smal_0477 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002026865.1 557781 D 391008 CDS YP_002026866.1 194364256 6478430 560495..563086 1 NC_011071.1 SMART: peptidase M14 carboxypeptidase A; KEGG: ilo:IL0695 secreted protein containing N-terminal zinc-dependent carboxypeptidase related domain; peptidase M14 carboxypeptidase A 563086 6478430 Smal_0478 Stenotrophomonas maltophilia R551-3 peptidase M14 carboxypeptidase A YP_002026866.1 560495 D 391008 CDS YP_002026867.1 194364257 6478431 complement(563262..564176) 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: amr:AM1_6037 transposase, IS116/IS110/IS902 family; transposase IS116/IS110/IS902 family protein 564176 6478431 Smal_0479 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002026867.1 563262 R 391008 CDS YP_002026868.1 194364258 6478432 complement(564863..566278) 1 NC_011071.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; DEAD/DEAH box helicase 566278 6478432 Smal_0480 Stenotrophomonas maltophilia R551-3 DEAD/DEAH box helicase YP_002026868.1 564863 R 391008 CDS YP_002026869.1 194364259 6478433 567174..568163 1 NC_011071.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: xac:XAC3609 fumarylacetoacetate hydrolase; fumarylacetoacetate (FAA) hydrolase 568163 6478433 Smal_0481 Stenotrophomonas maltophilia R551-3 fumarylacetoacetate (FAA) hydrolase YP_002026869.1 567174 D 391008 CDS YP_002026870.1 194364260 6478434 568178..568846 1 NC_011071.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV3731 maleylacetoacetate isomerase; maleylacetoacetate isomerase 568846 6478434 Smal_0482 Stenotrophomonas maltophilia R551-3 maleylacetoacetate isomerase YP_002026870.1 568178 D 391008 CDS YP_002026871.1 194364261 6478435 complement(568924..570051) 1 NC_011071.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: xcv:XCV3730 Tfp pilus assembly protein; twitching motility protein 570051 6478435 Smal_0483 Stenotrophomonas maltophilia R551-3 twitching motility protein YP_002026871.1 568924 R 391008 CDS YP_002026872.1 194364262 6478436 570173..570538 1 NC_011071.1 KEGG: xac:XAC3606 outer membran protein; outer membrane protein 570538 6478436 Smal_0484 Stenotrophomonas maltophilia R551-3 outer membrane protein YP_002026872.1 570173 D 391008 CDS YP_002026873.1 194364263 6478437 570535..571419 1 NC_011071.1 PFAM: OmpA/MotB domain protein; KEGG: xcb:XC_3638 outer membrane protein; OmpA/MotB domain-containing protein 571419 6478437 Smal_0485 Stenotrophomonas maltophilia R551-3 OmpA/MotB domain-containing protein YP_002026873.1 570535 D 391008 CDS YP_002026874.1 194364264 6478438 571586..571750 1 NC_011071.1 hypothetical protein 571750 6478438 Smal_0486 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026874.1 571586 D 391008 CDS YP_002026875.1 194364265 6478439 571743..571979 1 NC_011071.1 PFAM: protein of unknown function DUF465; KEGG: xcb:XC_3637 hypothetical protein; hypothetical protein 571979 6478439 Smal_0487 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026875.1 571743 D 391008 CDS YP_002026876.1 194364266 6478440 572346..573716 1 NC_011071.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_3636 cystathionine beta-synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 573716 6478440 Smal_0488 Stenotrophomonas maltophilia R551-3 pyridoxal-5'-phosphate-dependent protein subunit beta YP_002026876.1 572346 D 391008 CDS YP_002026877.1 194364267 6478441 573840..575012 1 NC_011071.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: xcb:XC_3635 cystathionine gamma-lyase-like protein; cystathionine gamma-lyase 575012 6478441 Smal_0489 Stenotrophomonas maltophilia R551-3 cystathionine gamma-lyase YP_002026877.1 573840 D 391008 CDS YP_002026878.1 194364268 6478442 575009..575869 1 NC_011071.1 PFAM: ABC-2 type transporter; KEGG: nha:Nham_2778 ABC-2; ABC-2 type transporter 575869 6478442 Smal_0490 Stenotrophomonas maltophilia R551-3 ABC-2 type transporter YP_002026878.1 575009 D 391008 CDS YP_002026879.1 194364269 6478443 575874..576599 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1877 ABC transporter ATPase; ABC transporter-like protein 576599 6478443 Smal_0491 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026879.1 575874 D 391008 CDS YP_002026880.1 194364270 6477396 576600..578840 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_4620 hypothetical protein; type 12 methyltransferase 578840 6477396 Smal_0492 Stenotrophomonas maltophilia R551-3 type 12 methyltransferase YP_002026880.1 576600 D 391008 CDS YP_002026881.1 194364271 6477397 578843..581014 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_4619 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 581014 6477397 Smal_0493 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002026881.1 578843 D 391008 CDS YP_002026882.1 194364272 6477398 581034..583058 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_4619 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 583058 6477398 Smal_0494 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002026882.1 581034 D 391008 CDS YP_002026883.1 194364273 6477399 complement(583105..584115) 1 NC_011071.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dac:Daci_5547 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 584115 6477399 Smal_0495 Stenotrophomonas maltophilia R551-3 UDP-glucose 4-epimerase YP_002026883.1 583105 R 391008 CDS YP_002026884.1 194364274 6477400 584297..585895 1 NC_011071.1 KEGG: mav:MAV_0212 hypothetical protein; hypothetical protein 585895 6477400 Smal_0496 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026884.1 584297 D 391008 CDS YP_002026885.1 194364275 6477401 complement(586256..586684) 1 NC_011071.1 KEGG: maq:Maqu_1646 hypothetical protein; hypothetical protein 586684 6477401 Smal_0497 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026885.1 586256 R 391008 CDS YP_002026886.1 194364276 6477402 complement(586681..587412) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC3591 short chain dehydrogenase; short chain dehydrogenase 587412 6477402 Smal_0498 Stenotrophomonas maltophilia R551-3 short chain dehydrogenase YP_002026886.1 586681 R 391008 CDS YP_002026887.1 194364277 6477403 complement(587415..588728) 1 NC_011071.1 PFAM: FAD linked oxidase domain protein; KEGG: xac:XAC3590 oxidoreductase; FAD linked oxidase domain-containing protein 588728 6477403 Smal_0499 Stenotrophomonas maltophilia R551-3 FAD linked oxidase domain-containing protein YP_002026887.1 587415 R 391008 CDS YP_002026888.1 194364278 6477404 complement(588725..590143) 1 NC_011071.1 PFAM: UbiA prenyltransferase; KEGG: xac:XAC3589 hypothetical protein; hypothetical protein 590143 6477404 Smal_0500 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026888.1 588725 R 391008 CDS YP_002026889.1 194364279 6477405 complement(590536..591474) 1 NC_011071.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: xcb:XC_3615 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 591474 6477405 Smal_0501 Stenotrophomonas maltophilia R551-3 electron transfer flavoprotein subunit alpha YP_002026889.1 590536 R 391008 CDS YP_002026890.1 194364280 6477406 complement(591474..592220) 1 NC_011071.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: xac:XAC3586 electron transfer flavoprotein beta subunit; electron transfer flavoprotein subunit alpha/beta 592220 6477406 Smal_0502 Stenotrophomonas maltophilia R551-3 electron transfer flavoprotein subunit alpha/beta YP_002026890.1 591474 R 391008 CDS YP_002026891.1 194364281 6477407 592506..593561 1 NC_011071.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xcv:XCV3709 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 593561 6477407 Smal_0503 Stenotrophomonas maltophilia R551-3 dTDP-glucose 4,6-dehydratase YP_002026891.1 592506 D 391008 CDS YP_002026892.1 194364282 6477408 593576..594463 1 NC_011071.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: xom:XOO_0721 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 594463 6477408 Smal_0504 Stenotrophomonas maltophilia R551-3 glucose-1-phosphate thymidylyltransferase YP_002026892.1 593576 D 391008 CDS YP_002026893.1 194364283 6477409 594460..595017 1 NC_011071.1 KEGG: xac:XAC3583 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 595017 6477409 Smal_0505 Stenotrophomonas maltophilia R551-3 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002026893.1 594460 D 391008 CDS YP_002026894.1 194364284 6477410 595014..595952 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xac:XAC3582 dTDP-4-keto-L-rhamnose reductase; dTDP-4-dehydrorhamnose reductase 595952 6477410 Smal_0506 Stenotrophomonas maltophilia R551-3 dTDP-4-dehydrorhamnose reductase YP_002026894.1 595014 D 391008 CDS YP_002026895.1 194364285 6477411 596071..597909 1 NC_011071.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 597909 6477411 Smal_0507 Stenotrophomonas maltophilia R551-3 glucosamine--fructose-6-phosphate aminotransferase YP_002026895.1 596071 D 391008 CDS YP_002026896.1 194364286 6477412 complement(598002..599405) 1 NC_011071.1 KEGG: xcb:XC_3609 phosphomannose isomerase/GDP-mannose pyrophosphorylase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 599405 6477412 Smal_0508 Stenotrophomonas maltophilia R551-3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_002026896.1 598002 R 391008 CDS YP_002026897.1 194364287 6477413 complement(599417..600763) 1 NC_011071.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: xcb:XC_3608 phosphoglucomutase; phosphomannomutase; phosphomannomutase 600763 6477413 Smal_0509 Stenotrophomonas maltophilia R551-3 phosphomannomutase YP_002026897.1 599417 R 391008 CDS YP_002026898.1 194364288 6477414 600995..601951 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xfa:XF0611 dTDP-glucose 4-6-dehydratase; NAD-dependent epimerase/dehydratase 601951 6477414 Smal_0510 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002026898.1 600995 D 391008 CDS YP_002026899.1 194364289 6477415 601962..602906 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: xfa:XF0612 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase 602906 6477415 Smal_0511 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002026899.1 601962 D 391008 CDS YP_002026900.1 194364290 6477416 602884..603288 1 NC_011071.1 PFAM: GtrA family protein; KEGG: xfn:XfasM23_1626 GtrA family protein; GtrA family protein 603288 6477416 Smal_0512 Stenotrophomonas maltophilia R551-3 GtrA family protein YP_002026900.1 602884 D 391008 CDS YP_002026901.1 194364291 6477417 603285..603884 1 NC_011071.1 KEGG: xfm:Xfasm12_1695 hypothetical protein; hypothetical protein 603884 6477417 Smal_0513 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026901.1 603285 D 391008 CDS YP_002026902.1 194364292 6477418 603934..604359 1 NC_011071.1 hypothetical protein 604359 6477418 Smal_0514 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026902.1 603934 D 391008 CDS YP_002026903.1 194364293 6477419 604334..605536 1 NC_011071.1 KEGG: sus:Acid_7379 hypothetical protein; hypothetical protein 605536 6477419 Smal_0515 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026903.1 604334 D 391008 CDS YP_002026904.1 194364294 6477420 complement(605567..608881) 1 NC_011071.1 KEGG: bxe:Bxe_B1664 putative helicase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase 608881 6477420 Smal_0516 Stenotrophomonas maltophilia R551-3 Non-specific serine/threonine protein kinase YP_002026904.1 605567 R 391008 CDS YP_002026905.1 194364295 6477421 609042..609773 1 NC_011071.1 KEGG: xom:XOO_0726 IpsJ protein; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 609773 6477421 Smal_0517 Stenotrophomonas maltophilia R551-3 3-oxoacid CoA-transferase subunit A YP_002026905.1 609042 D 391008 CDS YP_002026906.1 194364296 6477422 609775..610407 1 NC_011071.1 KEGG: xcb:XC_3606 IpsJ protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 610407 6477422 Smal_0518 Stenotrophomonas maltophilia R551-3 3-oxoacid CoA-transferase subunit B YP_002026906.1 609775 D 391008 CDS YP_002026907.1 194364297 6477423 complement(610418..612478) 1 NC_011071.1 KEGG: xom:XOO_0728 hypothetical protein; hypothetical protein 612478 6477423 Smal_0519 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026907.1 610418 R 391008 CDS YP_002026908.1 194364298 6477424 612595..613182 1 NC_011071.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: xac:XAC3574 DNA repair system specific for alkylated DNA; 2OG-Fe(II) oxygenase 613182 6477424 Smal_0520 Stenotrophomonas maltophilia R551-3 2OG-Fe(II) oxygenase YP_002026908.1 612595 D 391008 CDS YP_002026909.1 194364299 6477425 complement(613254..613895) 1 NC_011071.1 PFAM: protein of unknown function DUF330; KEGG: xcb:XC_3602 hypothetical protein; hypothetical protein 613895 6477425 Smal_0521 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026909.1 613254 R 391008 CDS YP_002026910.1 194364300 6477426 complement(613892..614818) 1 NC_011071.1 PFAM: Mammalian cell entry related domain protein; KEGG: xac:XAC3572 hypothetical protein; mammalian cell entry domain-containing protein 614818 6477426 Smal_0522 Stenotrophomonas maltophilia R551-3 mammalian cell entry domain-containing protein YP_002026910.1 613892 R 391008 CDS YP_002026911.1 194364301 6477427 complement(614822..615649) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3571 ABC transporter ATP-binding protein; ABC transporter-like protein 615649 6477427 Smal_0523 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002026911.1 614822 R 391008 CDS YP_002026912.1 194364302 6477428 complement(615651..616772) 1 NC_011071.1 PFAM: protein of unknown function DUF140; KEGG: xac:XAC3570 ABC transporter permease; hypothetical protein 616772 6477428 Smal_0524 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026912.1 615651 R 391008 CDS YP_002026913.1 194364303 6477429 616865..618124 1 NC_011071.1 PFAM: protein of unknown function DUF1212; KEGG: xcb:XC_3598 hypothetical protein; hypothetical protein 618124 6477429 Smal_0525 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026913.1 616865 D 391008 CDS YP_002026914.1 194364304 6477430 complement(618255..618638) 1 NC_011071.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: xcb:XC_3597 DNA-binding protein; histone family protein nucleoid-structuring protein H-NS 618638 6477430 Smal_0526 Stenotrophomonas maltophilia R551-3 histone family protein nucleoid-structuring protein H-NS YP_002026914.1 618255 R 391008 CDS YP_002026915.1 194364305 6477431 complement(618861..620564) 1 NC_011071.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 620564 6477431 Smal_0527 Stenotrophomonas maltophilia R551-3 prolyl-tRNA synthetase YP_002026915.1 618861 R 391008 CDS YP_002026916.1 194364306 6477432 complement(621158..621532) 1 NC_011071.1 KEGG: xfn:XfasM23_1728 hypothetical protein; hypothetical protein 621532 6477432 Smal_0528 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026916.1 621158 R 391008 CDS YP_002026917.1 194364307 6477433 621613..622389 1 NC_011071.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xac:XAC3565 phosphatidylserine synthase; CDP-diacylglycerol/serine O-phosphatidyltransferase 622389 6477433 Smal_0529 Stenotrophomonas maltophilia R551-3 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_002026917.1 621613 D 391008 CDS YP_002026918.1 194364308 6477434 622386..622889 1 NC_011071.1 KEGG: xom:XOO_0740 hypothetical protein; hypothetical protein 622889 6477434 Smal_0530 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026918.1 622386 D 391008 CDS YP_002026919.1 194364309 6477435 622886..623383 1 NC_011071.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3688 putative acetyltransferase; ribosomal-protein-alanine acetyltransferase 623383 6477435 Smal_0531 Stenotrophomonas maltophilia R551-3 ribosomal-protein-alanine acetyltransferase YP_002026919.1 622886 D 391008 CDS YP_002026920.1 194364310 6477436 complement(623451..624272) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cti:RALTA_B0369 putative transmembrane protein; hypothetical protein 624272 6477436 Smal_0532 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026920.1 623451 R 391008 CDS YP_002026921.1 194364311 6477437 complement(624366..627194) 1 NC_011071.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 627194 valS 6477437 valS Stenotrophomonas maltophilia R551-3 valyl-tRNA synthetase YP_002026921.1 624366 R 391008 CDS YP_002026922.1 194364312 6477438 complement(627228..627419) 1 NC_011071.1 KEGG: bmn:BMA10247_A2104 hypothetical protein; hypothetical protein 627419 6477438 Smal_0534 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026922.1 627228 R 391008 CDS YP_002026923.1 194364313 6477439 complement(627439..627864) 1 NC_011071.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 627864 6477439 Smal_0535 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit chi YP_002026923.1 627439 R 391008 CDS YP_002026924.1 194364314 6477440 complement(627947..629425) 1 NC_011071.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 629425 6477440 Smal_0536 Stenotrophomonas maltophilia R551-3 leucyl aminopeptidase YP_002026924.1 627947 R 391008 CDS YP_002026925.1 194364315 6477441 629530..630612 1 NC_011071.1 PFAM: permease YjgP/YjgQ family protein; KEGG: xcb:XC_3584 hypothetical protein; YjgP/YjgQ family permease 630612 6477441 Smal_0537 Stenotrophomonas maltophilia R551-3 YjgP/YjgQ family permease YP_002026925.1 629530 D 391008 CDS YP_002026926.1 194364316 6477442 630609..631715 1 NC_011071.1 PFAM: permease YjgP/YjgQ family protein; KEGG: xcb:XC_3583 hypothetical protein; YjgP/YjgQ family permease 631715 6477442 Smal_0538 Stenotrophomonas maltophilia R551-3 YjgP/YjgQ family permease YP_002026926.1 630609 D 391008 CDS YP_002026927.1 194364317 6477443 complement(631798..632289) 1 NC_011071.1 PFAM: RDD domain containing protein; KEGG: xom:XOO_0763 hypothetical protein; RDD domain-containing protein 632289 6477443 Smal_0539 Stenotrophomonas maltophilia R551-3 RDD domain-containing protein YP_002026927.1 631798 R 391008 CDS YP_002026928.1 194364318 6477444 632346..633323 1 NC_011071.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 633323 xerD 6477444 xerD Stenotrophomonas maltophilia R551-3 site-specific tyrosine recombinase XerD YP_002026928.1 632346 D 391008 CDS YP_002026929.1 194364319 6477445 633424..634215 1 NC_011071.1 KEGG: xcv:XCV3675 protein disulfide isomerase precursor; protein disulfide isomerase 634215 6477445 Smal_0541 Stenotrophomonas maltophilia R551-3 protein disulfide isomerase YP_002026929.1 633424 D 391008 CDS YP_002026930.1 194364320 6477446 complement(634337..636448) 1 NC_011071.1 PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Fibronectin type III domain protein; SMART: chitinase II; KEGG: cvi:CV_4240 probable chitinase; glycoside hydrolase family protein 636448 6477446 Smal_0542 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family protein YP_002026930.1 634337 R 391008 CDS YP_002026931.1 194364321 6477447 637280..641164 1 NC_011071.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 641164 6477447 Smal_0543 Stenotrophomonas maltophilia R551-3 phosphoribosylformylglycinamidine synthase YP_002026931.1 637280 D 391008 CDS YP_002026932.1 194364322 6477448 641603..648781 1 NC_011071.1 PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: xac:XAC3546 outer membrane protein; YadA domain-containing protein 648781 6477448 Smal_0544 Stenotrophomonas maltophilia R551-3 YadA domain-containing protein YP_002026932.1 641603 D 391008 CDS YP_002026933.1 194364323 6477449 648940..650793 1 NC_011071.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: xcv:XCV3669 extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 650793 6477449 Smal_0545 Stenotrophomonas maltophilia R551-3 peptidase S8/S53 subtilisin kexin sedolisin YP_002026933.1 648940 D 391008 CDS YP_002026934.1 194364324 6477450 650930..652651 1 NC_011071.1 KEGG: xom:XOO_0771 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; general secretory pathway protein E 652651 6477450 Smal_0546 Stenotrophomonas maltophilia R551-3 general secretory pathway protein E YP_002026934.1 650930 D 391008 CDS YP_002026935.1 194364325 6477451 652676..653896 1 NC_011071.1 PFAM: type II secretion system protein; KEGG: xcb:XC_3572 general secretion pathway protein F; type II secretion system protein 653896 6477451 Smal_0547 Stenotrophomonas maltophilia R551-3 type II secretion system protein YP_002026935.1 652676 D 391008 CDS YP_002026936.1 194364326 6477452 653946..654389 1 NC_011071.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: xcv:XCV3666 type II secretory pathway pseudopilin; general secretion pathway protein G 654389 6477452 Smal_0548 Stenotrophomonas maltophilia R551-3 general secretion pathway protein G YP_002026936.1 653946 D 391008 CDS YP_002026937.1 194364327 6477453 654396..654890 1 NC_011071.1 TIGRFAM: general secretion pathway protein H; KEGG: xac:XAC3541 general secretion pathway protein H; general secretion pathway protein H 654890 6477453 Smal_0549 Stenotrophomonas maltophilia R551-3 general secretion pathway protein H YP_002026937.1 654396 D 391008 CDS YP_002026938.1 194364328 6477454 654887..655306 1 NC_011071.1 KEGG: xcv:XCV3664 type II secretory pathway pseudopilin; type II secretory pathway pseudopilin 655306 6477454 Smal_0550 Stenotrophomonas maltophilia R551-3 type II secretory pathway pseudopilin YP_002026938.1 654887 D 391008 CDS YP_002026939.1 194364329 6477455 655303..655935 1 NC_011071.1 KEGG: xcv:XCV3663 general secretion pathway protein J; general secretion pathway protein J 655935 6477455 Smal_0551 Stenotrophomonas maltophilia R551-3 general secretion pathway protein J YP_002026939.1 655303 D 391008 CDS YP_002026940.1 194364330 6477456 655932..656795 1 NC_011071.1 PFAM: General secretion pathway protein K; KEGG: xom:XOO_0777 general secretion pathway protein K; General secretion pathway protein K 656795 6477456 Smal_0552 Stenotrophomonas maltophilia R551-3 General secretion pathway protein K YP_002026940.1 655932 D 391008 CDS YP_002026941.1 194364331 6477457 656792..657931 1 NC_011071.1 PFAM: Fimbrial assembly family protein; KEGG: xcb:XC_3566 general secretion pathway protein L; fimbrial assembly family protein 657931 6477457 Smal_0553 Stenotrophomonas maltophilia R551-3 fimbrial assembly family protein YP_002026941.1 656792 D 391008 CDS YP_002026942.1 194364332 6477458 657906..658613 1 NC_011071.1 KEGG: xac:XAC3536 general secretion pathway protein M; general secretion pathway protein M 658613 6477458 Smal_0554 Stenotrophomonas maltophilia R551-3 general secretion pathway protein M YP_002026942.1 657906 D 391008 CDS YP_002026943.1 194364333 6477459 658603..659394 1 NC_011071.1 KEGG: xac:XAC3535 general secretion pathway protein N; general secretion pathway protein N 659394 6477459 Smal_0555 Stenotrophomonas maltophilia R551-3 general secretion pathway protein N YP_002026943.1 658603 D 391008 CDS YP_002026944.1 194364334 6477460 659404..661605 1 NC_011071.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: xom:XOO_0781 general secretion pathway protein D; general secretion pathway protein D 661605 6477460 Smal_0556 Stenotrophomonas maltophilia R551-3 general secretion pathway protein D YP_002026944.1 659404 D 391008 CDS YP_002026945.1 194364335 6477461 662294..663148 1 NC_011071.1 KEGG: xcb:XC_3562 hypothetical protein; hypothetical protein 663148 6477461 Smal_0557 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026945.1 662294 D 391008 CDS YP_002026946.1 194364336 6477462 663145..663984 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: xcb:XC_3557 glycosyl transferase; family 2 glycosyl transferase 663984 6477462 Smal_0558 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002026946.1 663145 D 391008 CDS YP_002026947.1 194364337 6477463 664093..665274 1 NC_011071.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 665274 6477463 Smal_0559 Stenotrophomonas maltophilia R551-3 nicotinate phosphoribosyltransferase YP_002026947.1 664093 D 391008 CDS YP_002026948.1 194364338 6477464 complement(665294..665659) 1 NC_011071.1 KEGG: pap:PSPA7_5934 hypothetical protein; hypothetical protein 665659 6477464 Smal_0560 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026948.1 665294 R 391008 CDS YP_002026949.1 194364339 6477465 666100..666639 1 NC_011071.1 PFAM: Fimbrial protein; KEGG: aby:ABAYE1856 putative fimbrial protein precursor (pilin); fimbrial protein 666639 6477465 Smal_0561 Stenotrophomonas maltophilia R551-3 fimbrial protein YP_002026949.1 666100 D 391008 CDS YP_002026950.1 194364340 6477466 666725..667456 1 NC_011071.1 PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: xfn:XfasM23_0053 pili assembly chaperone, N-terminal; Pili assembly chaperone, N-terminal 667456 6477466 Smal_0562 Stenotrophomonas maltophilia R551-3 Pili assembly chaperone, N-terminal YP_002026950.1 666725 D 391008 CDS YP_002026951.1 194364341 6477467 667528..670113 1 NC_011071.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xfm:Xfasm12_0063 outer membrane usher protein precursor; fimbrial biogenesis outer membrane usher protein 670113 6477467 Smal_0563 Stenotrophomonas maltophilia R551-3 fimbrial biogenesis outer membrane usher protein YP_002026951.1 667528 D 391008 CDS YP_002026952.1 194364342 6477468 670104..671141 1 NC_011071.1 PFAM: Fimbrial protein; KEGG: xfa:XF0077 fimbrial adhesin precursor; fimbrial protein 671141 6477468 Smal_0564 Stenotrophomonas maltophilia R551-3 fimbrial protein YP_002026952.1 670104 D 391008 CDS YP_002026953.1 194364343 6477469 671409..672593 1 NC_011071.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mms:mma_2625 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 672593 6477469 Smal_0565 Stenotrophomonas maltophilia R551-3 UDP-N-acetylglucosamine 2-epimerase YP_002026953.1 671409 D 391008 CDS YP_002026954.1 194364344 6477470 672590..674791 1 NC_011071.1 KEGG: mms:mma_2624 hypothetical protein; hypothetical protein 674791 6477470 Smal_0566 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026954.1 672590 D 391008 CDS YP_002026955.1 194364345 6477471 674798..676945 1 NC_011071.1 PFAM: General secretory system II protein E domain protein; KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B; bacteriophage N4 adsorption protein B 676945 nfrB 6477471 nfrB Stenotrophomonas maltophilia R551-3 bacteriophage N4 adsorption protein B YP_002026955.1 674798 D 391008 CDS YP_002026956.1 194364346 6477472 676942..679764 1 NC_011071.1 KEGG: dac:Daci_2942 TPR repeat-containing protein; hypothetical protein 679764 6477472 Smal_0568 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026956.1 676942 D 391008 CDS YP_002026957.1 194364347 6477473 complement(679758..680762) 1 NC_011071.1 KEGG: dac:Daci_2934 hypothetical protein; hypothetical protein 680762 6477473 Smal_0569 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026957.1 679758 R 391008 CDS YP_002026958.1 194364348 6477474 complement(680845..682161) 1 NC_011071.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: xcv:XCV0318 major facilitator superfamily protein; xanthine/uracil/vitamin C permease 682161 6477474 Smal_0570 Stenotrophomonas maltophilia R551-3 xanthine/uracil/vitamin C permease YP_002026958.1 680845 R 391008 CDS YP_002026959.1 194364349 6477475 complement(682345..684009) 1 NC_011071.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 684009 6477475 Smal_0571 Stenotrophomonas maltophilia R551-3 putative ABC transporter ATP-binding protein YP_002026959.1 682345 R 391008 CDS YP_002026960.1 194364350 6477476 684265..684738 1 NC_011071.1 KEGG: xcv:XCV0793 hypothetical protein; hypothetical protein 684738 6477476 Smal_0572 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026960.1 684265 D 391008 CDS YP_002026961.1 194364351 6477477 684926..686179 1 NC_011071.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 686179 glyA 6477477 glyA Stenotrophomonas maltophilia R551-3 serine hydroxymethyltransferase YP_002026961.1 684926 D 391008 CDS YP_002026962.1 194364352 6477519 686304..686723 1 NC_011071.1 KEGG: xfm:Xfasm12_1911 hypothetical protein; hypothetical protein 686723 6477519 Smal_0574 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026962.1 686304 D 391008 CDS YP_002026963.1 194364353 6477520 686751..687200 1 NC_011071.1 KEGG: xfm:Xfasm12_1911 hypothetical protein; hypothetical protein 687200 6477520 Smal_0575 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026963.1 686751 D 391008 CDS YP_002026964.1 194364354 6477521 687349..687870 1 NC_011071.1 PFAM: ATP-cone domain protein; KEGG: xom:XOO_3637 hypothetical protein; transcriptional regulator NrdR 687870 nrdR 6477521 nrdR Stenotrophomonas maltophilia R551-3 transcriptional regulator NrdR YP_002026964.1 687349 D 391008 CDS YP_002026965.1 194364355 6477522 687950..689035 1 NC_011071.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: xac:XAC0746 5-amino-6-uracil reductase; riboflavin biosynthesis protein RibD 689035 6477522 Smal_0577 Stenotrophomonas maltophilia R551-3 riboflavin biosynthesis protein RibD YP_002026965.1 687950 D 391008 CDS YP_002026966.1 194364356 6477523 complement(689071..689466) 1 NC_011071.1 hypothetical protein 689466 6477523 Smal_0578 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026966.1 689071 R 391008 CDS YP_002026967.1 194364357 6477524 complement(689601..690485) 1 NC_011071.1 KEGG: bur:Bcep18194_A3717 hypothetical protein; hypothetical protein 690485 6477524 Smal_0579 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026967.1 689601 R 391008 CDS YP_002026968.1 194364358 6477525 complement(690638..691258) 1 NC_011071.1 KEGG: xcb:XC_3540 hypothetical protein; hypothetical protein 691258 6477525 Smal_0580 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026968.1 690638 R 391008 CDS YP_002026969.1 194364359 6477526 691783..692409 1 NC_011071.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 692409 6477526 Smal_0581 Stenotrophomonas maltophilia R551-3 riboflavin synthase subunit alpha YP_002026969.1 691783 D 391008 CDS YP_002026970.1 194364360 6477527 692406..693506 1 NC_011071.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: xcb:XC_3538 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 693506 6477527 Smal_0582 Stenotrophomonas maltophilia R551-3 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002026970.1 692406 D 391008 CDS YP_002026971.1 194364361 6477528 693692..694159 1 NC_011071.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 694159 ribH 6477528 ribH Stenotrophomonas maltophilia R551-3 6,7-dimethyl-8-ribityllumazine synthase YP_002026971.1 693692 D 391008 CDS YP_002026972.1 194364362 6477529 694156..694635 1 NC_011071.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 694635 nusB 6477529 nusB Stenotrophomonas maltophilia R551-3 transcription antitermination protein NusB YP_002026972.1 694156 D 391008 CDS YP_002026973.1 194364363 6477530 694756..695718 1 NC_011071.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 695718 6477530 Smal_0585 Stenotrophomonas maltophilia R551-3 thiamine monophosphate kinase YP_002026973.1 694756 D 391008 CDS YP_002026974.1 194364364 6477531 complement(695950..696135) 1 NC_011071.1 hypothetical protein 696135 6477531 Smal_0586 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026974.1 695950 R 391008 CDS YP_002026975.1 194364365 6477532 complement(696477..697862) 1 NC_011071.1 PFAM: FAD linked oxidase domain protein; KEGG: xac:XAC0762 D-lactate dehydrogenase; FAD linked oxidase domain-containing protein 697862 6477532 Smal_0587 Stenotrophomonas maltophilia R551-3 FAD linked oxidase domain-containing protein YP_002026975.1 696477 R 391008 CDS YP_002026976.1 194364366 6477533 complement(697859..698440) 1 NC_011071.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: xcv:XCV0815 hypothetical protein; membrane-bound metal-dependent hydrolase 698440 6477533 Smal_0588 Stenotrophomonas maltophilia R551-3 membrane-bound metal-dependent hydrolase YP_002026976.1 697859 R 391008 CDS YP_002026977.1 194364367 6477534 complement(698551..698946) 1 NC_011071.1 PFAM: protein of unknown function UPF0102; KEGG: xcb:XC_3524 hypothetical protein; hypothetical protein 698946 6477534 Smal_0589 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026977.1 698551 R 391008 CDS YP_002026978.1 194364368 6477535 complement(698909..700630) 1 NC_011071.1 PFAM: LppC family lipoprotein; KEGG: xcb:XC_3523 hypothetical protein; LppC family lipoprotein 700630 6477535 Smal_0590 Stenotrophomonas maltophilia R551-3 LppC family lipoprotein YP_002026978.1 698909 R 391008 CDS YP_002026979.1 194364369 6477536 700712..701530 1 NC_011071.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: xoo:XOO3837 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 701530 6477536 Smal_0591 Stenotrophomonas maltophilia R551-3 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002026979.1 700712 D 391008 CDS YP_002026980.1 194364370 6477538 complement(702130..702609) 1 NC_011071.1 KEGG: pol:Bpro_4776 hypothetical protein; hypothetical protein 702609 6477538 Smal_0592 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026980.1 702130 R 391008 CDS YP_002026981.1 194364371 6477539 complement(702968..703720) 1 NC_011071.1 PFAM: protein of unknown function DUF833; KEGG: xcb:XC_3519 hypothetical protein; hypothetical protein 703720 6477539 Smal_0593 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026981.1 702968 R 391008 CDS YP_002026982.1 194364372 6477540 704044..704490 1 NC_011071.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 704490 6477540 Smal_0594 Stenotrophomonas maltophilia R551-3 cell division protein MraZ YP_002026982.1 704044 D 391008 CDS YP_002026983.1 194364373 6477541 704505..705473 1 NC_011071.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: xoo:XOO3833 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 705473 mraW 6477541 mraW Stenotrophomonas maltophilia R551-3 S-adenosyl-methyltransferase MraW YP_002026983.1 704505 D 391008 CDS YP_002026984.1 194364374 6477542 705470..705733 1 NC_011071.1 PFAM: cell division protein FtsL; KEGG: xfn:XfasM23_1975 cell division protein FtsL; cell division protein FtsL 705733 6477542 Smal_0596 Stenotrophomonas maltophilia R551-3 cell division protein FtsL YP_002026984.1 705470 D 391008 CDS YP_002026985.1 194364375 6477543 705730..707574 1 NC_011071.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: xcv:XCV0825 cell division protein FtsI; peptidoglycan glycosyltransferase 707574 6477543 Smal_0597 Stenotrophomonas maltophilia R551-3 peptidoglycan glycosyltransferase YP_002026985.1 705730 D 391008 CDS YP_002026986.1 194364376 6477544 707571..709079 1 NC_011071.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 709079 murE 6477544 murE Stenotrophomonas maltophilia R551-3 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002026986.1 707571 D 391008 CDS YP_002026987.1 194364377 6477545 709076..710470 1 NC_011071.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: xcc:XCC0722 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 710470 6477545 Smal_0599 Stenotrophomonas maltophilia R551-3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_002026987.1 709076 D 391008 CDS YP_002026988.1 194364378 6477546 710460..711545 1 NC_011071.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 711545 mraY 6477546 mraY Stenotrophomonas maltophilia R551-3 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002026988.1 710460 D 391008 CDS YP_002026989.1 194364379 6477547 711547..712872 1 NC_011071.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: xcb:XC_3511 cell division protein; cell division protein FtsW 712872 6477547 Smal_0601 Stenotrophomonas maltophilia R551-3 cell division protein FtsW YP_002026989.1 711547 D 391008 CDS YP_002026990.1 194364380 6477548 712869..713957 1 NC_011071.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 713957 murG 6477548 murG Stenotrophomonas maltophilia R551-3 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002026990.1 712869 D 391008 CDS YP_002026991.1 194364381 6477549 713998..715434 1 NC_011071.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 715434 murC 6477549 murC Stenotrophomonas maltophilia R551-3 UDP-N-acetylmuramate--L-alanine ligase YP_002026991.1 713998 D 391008 CDS YP_002026992.1 194364382 6477550 715431..716393 1 NC_011071.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 716393 ddl 6477550 ddl Stenotrophomonas maltophilia R551-3 D-alanine--D-alanine ligase YP_002026992.1 715431 D 391008 CDS YP_002026993.1 194364383 6477551 716390..717139 1 NC_011071.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: xcb:XC_3507 cell division protein; Polypeptide-transport-associated domain-containing protein FtsQ-type 717139 6477551 Smal_0605 Stenotrophomonas maltophilia R551-3 Polypeptide-transport-associated domain-containing protein FtsQ-type YP_002026993.1 716390 D 391008 CDS YP_002026994.1 194364384 6477552 717136..718371 1 NC_011071.1 PFAM: cell division protein FtsA; KEGG: xac:XAC0783 cell division protein; cell division protein FtsA 718371 6477552 Smal_0606 Stenotrophomonas maltophilia R551-3 cell division protein FtsA YP_002026994.1 717136 D 391008 CDS YP_002026995.1 194364385 6477553 718542..719777 1 NC_011071.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 719777 6477553 Smal_0607 Stenotrophomonas maltophilia R551-3 cell division protein FtsZ YP_002026995.1 718542 D 391008 CDS YP_002026996.1 194364386 6477554 719971..720882 1 NC_011071.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 720882 lpxC 6477554 lpxC Stenotrophomonas maltophilia R551-3 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002026996.1 719971 D 391008 CDS YP_002026997.1 194364387 6477555 complement(721165..721614) 1 NC_011071.1 KEGG: xcv:XCV0837 hypothetical protein; hypothetical protein 721614 6477555 Smal_0609 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002026997.1 721165 R 391008 CDS YP_002026998.1 194364388 6477556 721627..722583 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xcb:XC_3502 peptidase; peptidase M23 722583 6477556 Smal_0610 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002026998.1 721627 D 391008 CDS YP_002026999.1 194364389 6477557 722882..725614 1 NC_011071.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 725614 6477557 Smal_0611 Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecA YP_002026999.1 722882 D 391008 CDS YP_002027000.1 194364390 6477558 725727..726683 1 NC_011071.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: xom:XOO_3593 hypothetical protein; hypothetical protein 726683 6477558 Smal_0612 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027000.1 725727 D 391008 CDS YP_002027001.1 194364391 6477559 complement(726778..727359) 1 NC_011071.1 KEGG: xac:XAC0790 hypothetical protein; hypothetical protein 727359 6477559 Smal_0613 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027001.1 726778 R 391008 CDS YP_002027002.1 194364392 6477560 complement(727400..728227) 1 NC_011071.1 KEGG: xac:XAC0791 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 728227 6477560 Smal_0614 Stenotrophomonas maltophilia R551-3 5,10-methylenetetrahydrofolate reductase YP_002027002.1 727400 R 391008 CDS YP_002027003.1 194364393 6477561 728432..729358 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: ppg:PputGB1_3185 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 729358 6477561 Smal_0615 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002027003.1 728432 D 391008 CDS YP_002027004.1 194364394 6477562 729395..730444 1 NC_011071.1 PFAM: histidine kinase internal region; KEGG: sru:SRU_0415 putative transmembrane sensor histidine kinase transcription regulator protein; signal transduction histidine kinase LytS 730444 6477562 Smal_0616 Stenotrophomonas maltophilia R551-3 signal transduction histidine kinase LytS YP_002027004.1 729395 D 391008 CDS YP_002027005.1 194364395 6477563 730441..731172 1 NC_011071.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_0416 two-component system, regulatory protein; LytTR family two component transcriptional regulator 731172 6477563 Smal_0617 Stenotrophomonas maltophilia R551-3 LytTR family two component transcriptional regulator YP_002027005.1 730441 D 391008 CDS YP_002027006.1 194364396 6477564 complement(731179..732669) 1 NC_011071.1 PFAM: amidohydrolase; KEGG: sus:Acid_3398 amidohydrolase; amidohydrolase 732669 6477564 Smal_0618 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002027006.1 731179 R 391008 CDS YP_002027007.1 194364397 6477565 complement(732657..733949) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2720 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 733949 6477565 Smal_0619 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027007.1 732657 R 391008 CDS YP_002027008.1 194364398 6477566 complement(733946..734635) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2721 DNA-binding response regulator; winged helix family two component transcriptional regulator 734635 6477566 Smal_0620 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027008.1 733946 R 391008 CDS YP_002027009.1 194364399 6477567 complement(734638..735768) 1 NC_011071.1 PFAM: ThiJ/PfpI domain protein; KEGG: sse:Ssed_2722 putative intracellular protease/amidase-like protein; ThiJ/PfpI domain-containing protein 735768 6477567 Smal_0621 Stenotrophomonas maltophilia R551-3 ThiJ/PfpI domain-containing protein YP_002027009.1 734638 R 391008 CDS YP_002027010.1 194364400 6477568 735874..736431 1 NC_011071.1 KEGG: xcb:XC_3484 hypothetical protein; hypothetical protein 736431 6477568 Smal_0622 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027010.1 735874 D 391008 CDS YP_002027011.1 194364401 6477569 736541..737176 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: cya:CYA_2030 TonB family protein; TonB family protein 737176 6477569 Smal_0623 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002027011.1 736541 D 391008 CDS YP_002027012.1 194364402 6477570 complement(737247..737732) 1 NC_011071.1 KEGG: cms:CMS_1721 hypothetical protein; hypothetical protein 737732 6477570 Smal_0624 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027012.1 737247 R 391008 CDS YP_002027013.1 194364403 6477571 complement(737732..738205) 1 NC_011071.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: psa:PST_2848 YbaK/EbsC protein; ybaK/ebsC protein 738205 6477571 Smal_0625 Stenotrophomonas maltophilia R551-3 ybaK/ebsC protein YP_002027013.1 737732 R 391008 CDS YP_002027014.1 194364404 6477572 complement(738455..739900) 1 NC_011071.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 739900 6477572 Smal_0626 Stenotrophomonas maltophilia R551-3 S-adenosyl-L-homocysteine hydrolase YP_002027014.1 738455 R 391008 CDS YP_002027015.1 194364405 6477573 740140..742662 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xac:XAC0805 hypothetical protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 742662 6477573 Smal_0627 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002027015.1 740140 D 391008 CDS YP_002027016.1 194364406 6477574 742835..745546 1 NC_011071.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 745546 6477574 Smal_0628 Stenotrophomonas maltophilia R551-3 phosphoenolpyruvate carboxylase YP_002027016.1 742835 D 391008 CDS YP_002027017.1 194364407 6477575 complement(745663..746169) 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2844 thioesterase superfamily protein; thioesterase superfamily protein 746169 6477575 Smal_0629 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002027017.1 745663 R 391008 CDS YP_002027018.1 194364408 6477576 complement(746353..747564) 1 NC_011071.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 747564 6477576 Smal_0630 Stenotrophomonas maltophilia R551-3 S-adenosylmethionine synthetase YP_002027018.1 746353 R 391008 CDS YP_002027019.1 194364409 6477577 747898..749613 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: aha:AHA_1611 phosphate acyltransferase family protein; phospholipid/glycerol acyltransferase 749613 6477577 Smal_0631 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002027019.1 747898 D 391008 CDS YP_002027020.1 194364410 6477578 749610..750410 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: ccr:CC_3344 hypothetical protein; metallophosphoesterase 750410 6477578 Smal_0632 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002027020.1 749610 D 391008 CDS YP_002027021.1 194364411 6477579 750622..751677 1 NC_011071.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: xcv:XCV0866 hypothetical protein; membrane-bound metal-dependent hydrolase 751677 6477579 Smal_0633 Stenotrophomonas maltophilia R551-3 membrane-bound metal-dependent hydrolase YP_002027021.1 750622 D 391008 CDS YP_002027022.1 194364412 6477580 complement(751736..752734) 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: pfl:PFL_5488 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 752734 6477580 Smal_0634 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002027022.1 751736 R 391008 CDS YP_002027023.1 194364413 6477581 complement(752743..754635) 1 NC_011071.1 KEGG: efa:EF2179 hypothetical protein; hypothetical protein 754635 6477581 Smal_0635 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027023.1 752743 R 391008 CDS YP_002027024.1 194364414 6477582 complement(754906..755733) 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC0815 methyltransferase; type 11 methyltransferase 755733 6477582 Smal_0636 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002027024.1 754906 R 391008 CDS YP_002027025.1 194364415 6477583 complement(755848..756843) 1 NC_011071.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: xac:XAC0816 hypothetical protein; nifR3 family TIM-barrel protein 756843 6477583 Smal_0637 Stenotrophomonas maltophilia R551-3 nifR3 family TIM-barrel protein YP_002027025.1 755848 R 391008 CDS YP_002027026.1 194364416 6477584 complement(757002..757433) 1 NC_011071.1 KEGG: swd:Swoo_1427 hypothetical protein; hypothetical protein 757433 6477584 Smal_0638 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027026.1 757002 R 391008 CDS YP_002027027.1 194364417 6477585 complement(757515..758432) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_1493 transcriptional regulator, LysR family; LysR family transcriptional regulator 758432 6477585 Smal_0639 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027027.1 757515 R 391008 CDS YP_002027028.1 194364418 6477586 758528..759715 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3762 general substrate transporter:major facilitator superfamily; major facilitator superfamily protein 759715 6477586 Smal_0640 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027028.1 758528 D 391008 CDS YP_002027029.1 194364419 6477587 complement(759769..760734) 1 NC_011071.1 PFAM: PfkB domain protein; KEGG: xcv:XCV0870 ribokinase; Ribokinase 760734 6477587 Smal_0641 Stenotrophomonas maltophilia R551-3 Ribokinase YP_002027029.1 759769 R 391008 CDS YP_002027030.1 194364420 6477588 complement(760760..762058) 1 NC_011071.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: xcb:XC_3467 nucleoside transporter; Na+ dependent nucleoside transporter domain-containing protein 762058 6477588 Smal_0642 Stenotrophomonas maltophilia R551-3 Na+ dependent nucleoside transporter domain-containing protein YP_002027030.1 760760 R 391008 CDS YP_002027031.1 194364421 6477589 762253..763224 1 NC_011071.1 PFAM: aldo/keto reductase; KEGG: xcc:XCC0766 voltage-gated potassium channel beta subunit; aldo/keto reductase 763224 6477589 Smal_0643 Stenotrophomonas maltophilia R551-3 aldo/keto reductase YP_002027031.1 762253 D 391008 CDS YP_002027032.1 194364422 6477590 763465..763665 1 NC_011071.1 KEGG: xom:XOO_3562 hypothetical protein; hypothetical protein 763665 6477590 Smal_0644 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027032.1 763465 D 391008 CDS YP_002027033.1 194364423 6477591 763810..766062 1 NC_011071.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_3463 outer membrane hemin receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 766062 6477591 Smal_0645 Stenotrophomonas maltophilia R551-3 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_002027033.1 763810 D 391008 CDS YP_002027034.1 194364424 6477674 766067..766666 1 NC_011071.1 KEGG: xac:XAC0824 hypothetical protein; hypothetical protein 766666 6477674 Smal_0646 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027034.1 766067 D 391008 CDS YP_002027035.1 194364425 6477675 766740..767666 1 NC_011071.1 KEGG: xcb:XC_3461 hypothetical protein; hypothetical protein 767666 6477675 Smal_0647 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027035.1 766740 D 391008 CDS YP_002027036.1 194364426 6477676 complement(767817..768308) 1 NC_011071.1 hypothetical protein 768308 6477676 Smal_0648 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027036.1 767817 R 391008 CDS YP_002027037.1 194364427 6477677 complement(768411..770927) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xac:XAC0831 oxidoreductase; hypothetical protein 770927 6477677 Smal_0649 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027037.1 768411 R 391008 CDS YP_002027038.1 194364428 6477678 complement(770924..771571) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xom:XOO_3554 ABC transporter ATP-binding protein; ABC transporter-like protein 771571 6477678 Smal_0650 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027038.1 770924 R 391008 CDS YP_002027039.1 194364429 6477679 771647..772291 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xcv:XCV0886 acyl-CoA thioesterase I; lysophospholipase 772291 6477679 Smal_0651 Stenotrophomonas maltophilia R551-3 lysophospholipase YP_002027039.1 771647 D 391008 CDS YP_002027040.1 194364430 6477680 772379..773092 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xom:XOO_3552 two-component system regulatory protein; winged helix family two component transcriptional regulator 773092 6477680 Smal_0652 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027040.1 772379 D 391008 CDS YP_002027041.1 194364431 6477681 773249..774520 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3451 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 774520 6477681 Smal_0653 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027041.1 773249 D 391008 CDS YP_002027042.1 194364432 6477682 complement(774680..775381) 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xac:XAC0836 hypothetical protein; G-D-S-L family lipolytic protein 775381 6477682 Smal_0654 Stenotrophomonas maltophilia R551-3 G-D-S-L family lipolytic protein YP_002027042.1 774680 R 391008 CDS YP_002027043.1 194364433 6477683 775594..775989 1 NC_011071.1 PFAM: diacylglycerol kinase; KEGG: xfa:XF2334 diacylglycerol kinase; diacylglycerol kinase 775989 6477683 Smal_0655 Stenotrophomonas maltophilia R551-3 diacylglycerol kinase YP_002027043.1 775594 D 391008 CDS YP_002027044.1 194364434 6477684 776022..776771 1 NC_011071.1 PFAM: Integral membrane protein TerC; KEGG: apj:APJL_1129 hypothetical protein; integral membrane protein TerC 776771 6477684 Smal_0656 Stenotrophomonas maltophilia R551-3 integral membrane protein TerC YP_002027044.1 776022 D 391008 CDS YP_002027045.1 194364435 6477685 777036..778196 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1695 MFS transporter, DHA1 family; major facilitator superfamily protein 778196 6477685 Smal_0657 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027045.1 777036 D 391008 CDS YP_002027046.1 194364436 6477686 778745..779365 1 NC_011071.1 PFAM: LemA family protein; KEGG: xcv:XCV0891 hypothetical protein; LemA family protein 779365 6477686 Smal_0658 Stenotrophomonas maltophilia R551-3 LemA family protein YP_002027046.1 778745 D 391008 CDS YP_002027047.1 194364437 6477687 779369..780256 1 NC_011071.1 PFAM: protein of unknown function DUF477; KEGG: xac:XAC0839 glycine rich protein; hypothetical protein 780256 6477687 Smal_0659 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027047.1 779369 D 391008 CDS YP_002027048.1 194364438 6477688 780256..780750 1 NC_011071.1 PFAM: protein of unknown function DUF477; KEGG: xcb:XC_3446 hypothetical protein; hypothetical protein 780750 6477688 Smal_0660 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027048.1 780256 D 391008 CDS YP_002027049.1 194364439 6477689 780802..781689 1 NC_011071.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 781689 6477689 Smal_0661 Stenotrophomonas maltophilia R551-3 prolipoprotein diacylglyceryl transferase YP_002027049.1 780802 D 391008 CDS YP_002027050.1 194364440 6477690 781686..782480 1 NC_011071.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 782480 thyA 6477690 thyA Stenotrophomonas maltophilia R551-3 thymidylate synthase YP_002027050.1 781686 D 391008 CDS YP_002027051.1 194364441 6477691 782489..783040 1 NC_011071.1 hypothetical protein 783040 6477691 Smal_0663 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027051.1 782489 D 391008 CDS YP_002027052.1 194364442 6477692 783054..783545 1 NC_011071.1 PFAM: dihydrofolate reductase region; KEGG: xcb:XC_3443 dihydrofolate reductase type III; Dihydrofolate reductase 783545 6477692 Smal_0664 Stenotrophomonas maltophilia R551-3 Dihydrofolate reductase YP_002027052.1 783054 D 391008 CDS YP_002027053.1 194364443 6477693 complement(783635..784282) 1 NC_011071.1 PFAM: protein of unknown function DUF1287; KEGG: pmy:Pmen_2518 protein of unknown function DUF1287; hypothetical protein 784282 6477693 Smal_0665 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027053.1 783635 R 391008 CDS YP_002027054.1 194364444 6477694 complement(784279..785313) 1 NC_011071.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 785313 apaH 6477694 apaH Stenotrophomonas maltophilia R551-3 diadenosine tetraphosphatase YP_002027054.1 784279 R 391008 CDS YP_002027055.1 194364445 6477695 complement(785329..785736) 1 NC_011071.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 785736 apaG 6477695 apaG Stenotrophomonas maltophilia R551-3 ApaG protein YP_002027055.1 785329 R 391008 CDS YP_002027056.1 194364446 6477696 complement(785726..786529) 1 NC_011071.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 786529 ksgA 6477696 ksgA Stenotrophomonas maltophilia R551-3 dimethyladenosine transferase YP_002027056.1 785726 R 391008 CDS YP_002027057.1 194364447 6477697 complement(786526..787506) 1 NC_011071.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 787506 pdxA 6477697 pdxA Stenotrophomonas maltophilia R551-3 4-hydroxythreonine-4-phosphate dehydrogenase YP_002027057.1 786526 R 391008 CDS YP_002027058.1 194364448 6477698 complement(787510..788853) 1 NC_011071.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: xac:XAC0865 peptidyl-prolyl cis-trans isomerase; SurA domain 788853 6477698 Smal_0670 Stenotrophomonas maltophilia R551-3 SurA domain YP_002027058.1 787510 R 391008 CDS YP_002027059.1 194364449 6477699 complement(788850..791330) 1 NC_011071.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 791330 6477699 Smal_0671 Stenotrophomonas maltophilia R551-3 organic solvent tolerance protein YP_002027059.1 788850 R 391008 CDS YP_002027060.1 194364450 6477700 complement(791420..792358) 1 NC_011071.1 PFAM: histone deacetylase superfamily; KEGG: xom:XOO_3534 acetoin utilization family protein; histone deacetylase superfamily protein 792358 6477700 Smal_0672 Stenotrophomonas maltophilia R551-3 histone deacetylase superfamily protein YP_002027060.1 791420 R 391008 CDS YP_002027061.1 194364451 6477701 complement(792368..792922) 1 NC_011071.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: xcc:XCC0796 hypothetical protein; ATP/cobalamin adenosyltransferase 792922 6477701 Smal_0673 Stenotrophomonas maltophilia R551-3 ATP/cobalamin adenosyltransferase YP_002027061.1 792368 R 391008 CDS YP_002027062.1 194364452 6477702 complement(792931..793515) 1 NC_011071.1 KEGG: xcv:XCV0906 hypothetical protein; hypothetical protein 793515 6477702 Smal_0674 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027062.1 792931 R 391008 CDS YP_002027063.1 194364453 6477703 793623..794831 1 NC_011071.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 794831 6477703 Smal_0675 Stenotrophomonas maltophilia R551-3 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002027063.1 793623 D 391008 CDS YP_002027064.1 194364454 6477704 794828..796009 1 NC_011071.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 796009 6477704 Smal_0676 Stenotrophomonas maltophilia R551-3 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002027064.1 794828 D 391008 CDS YP_002027065.1 194364455 6477705 complement(796078..796473) 1 NC_011071.1 KEGG: xcv:XCV0920 hypothetical protein; hypothetical protein 796473 6477705 Smal_0677 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027065.1 796078 R 391008 CDS YP_002027066.1 194364456 6477706 complement(796523..797590) 1 NC_011071.1 KEGG: xcb:XC_3414 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 797590 6477706 Smal_0678 Stenotrophomonas maltophilia R551-3 putative RNA 2'-O-ribose methyltransferase YP_002027066.1 796523 R 391008 CDS YP_002027067.1 194364457 6477707 complement(797574..798134) 1 NC_011071.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcb:XC_3413 hypothetical protein; zinc-binding CMP/dCMP deaminase 798134 6477707 Smal_0679 Stenotrophomonas maltophilia R551-3 zinc-binding CMP/dCMP deaminase YP_002027067.1 797574 R 391008 CDS YP_002027068.1 194364458 6477708 complement(798232..798954) 1 NC_011071.1 hypothetical protein 798954 6477708 Smal_0680 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027068.1 798232 R 391008 CDS YP_002027069.1 194364459 6477709 complement(799003..799656) 1 NC_011071.1 KEGG: cbe:Cbei_2916 NHL repeat containing protein; hypothetical protein 799656 6477709 Smal_0681 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027069.1 799003 R 391008 CDS YP_002027070.1 194364460 6477710 complement(799700..801448) 1 NC_011071.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 801448 6477710 Smal_0682 Stenotrophomonas maltophilia R551-3 glutaminyl-tRNA synthetase YP_002027070.1 799700 R 391008 CDS YP_002027071.1 194364461 6477711 801630..801893 1 NC_011071.1 KEGG: xac:XAC0895 hypothetical protein; hypothetical protein 801893 6477711 Smal_0683 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027071.1 801630 D 391008 CDS YP_002027072.1 194364462 6477712 801903..802589 1 NC_011071.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 802589 6477712 Smal_0684 Stenotrophomonas maltophilia R551-3 methionine sulfoxide reductase A YP_002027072.1 801903 D 391008 CDS YP_002027073.1 194364463 6477713 complement(803259..804215) 1 NC_011071.1 PFAM: Transaldolase; KEGG: xcb:XC_3400 transaldolase B; transaldolase B 804215 6477713 Smal_0685 Stenotrophomonas maltophilia R551-3 transaldolase B YP_002027073.1 803259 R 391008 CDS YP_002027074.1 194364464 6477714 complement(804266..804670) 1 NC_011071.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: xcc:XCC0831 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 804670 6477714 Smal_0686 Stenotrophomonas maltophilia R551-3 GreA/GreB family elongation factor YP_002027074.1 804266 R 391008 CDS YP_002027075.1 194364465 6477715 complement(804794..805756) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV0941 transcriptional regulator, LysR family; LysR family transcriptional regulator 805756 6477715 Smal_0687 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027075.1 804794 R 391008 CDS YP_002027076.1 194364466 6477716 complement(805842..807434) 1 NC_011071.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcv:XCV0942 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F 807434 6477716 Smal_0688 Stenotrophomonas maltophilia R551-3 alkyl hydroperoxide reductase subunit F YP_002027076.1 805842 R 391008 CDS YP_002027077.1 194364467 6477717 complement(807661..808224) 1 NC_011071.1 TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pmy:Pmen_1323 peroxiredoxin; peroxiredoxin 808224 6477717 Smal_0689 Stenotrophomonas maltophilia R551-3 peroxiredoxin YP_002027077.1 807661 R 391008 CDS YP_002027078.1 194364468 6477718 808575..809432 1 NC_011071.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: xom:XOO_3446 protoporphyrinogen oxidase; protein-(glutamine-N5) methyltransferase 809432 6477718 Smal_0690 Stenotrophomonas maltophilia R551-3 protein-(glutamine-N5) methyltransferase YP_002027078.1 808575 D 391008 CDS YP_002027079.1 194364469 6477719 809481..810422 1 NC_011071.1 KEGG: xac:XAC0909 proline imino-peptidase, chain A; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 810422 6477719 Smal_0691 Stenotrophomonas maltophilia R551-3 proline iminopeptidase YP_002027079.1 809481 D 391008 CDS YP_002027080.1 194364470 6477720 complement(810590..811501) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5204 transcriptional regulator, LysR family; LysR family transcriptional regulator 811501 6477720 Smal_0692 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027080.1 810590 R 391008 CDS YP_002027081.1 194364471 6477721 811580..812998 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4316 major facilitator superfamily MFS_1; major facilitator superfamily protein 812998 6477721 Smal_0693 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027081.1 811580 D 391008 CDS YP_002027082.1 194364472 6477722 812995..813666 1 NC_011071.1 KEGG: sdn:Sden_0162 50S ribosomal protein L7/L12; hypothetical protein 813666 6477722 Smal_0694 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027082.1 812995 D 391008 CDS YP_002027083.1 194364473 6477723 complement(813981..814778) 1 NC_011071.1 PFAM: N-formylglutamate amidohydrolase; KEGG: xom:XOO_3440 hypothetical protein; N-formylglutamate amidohydrolase 814778 6477723 Smal_0695 Stenotrophomonas maltophilia R551-3 N-formylglutamate amidohydrolase YP_002027083.1 813981 R 391008 CDS YP_002027084.1 194364474 6477724 complement(814771..815325) 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: xcb:XC_3392 MutT-like protein; NUDIX hydrolase 815325 6477724 Smal_0696 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002027084.1 814771 R 391008 CDS YP_002027085.1 194364475 6477725 complement(815322..816272) 1 NC_011071.1 PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: xcb:XC_3391 exodeoxyribonuclease IX; 5'-3' exonuclease 816272 6477725 Smal_0697 Stenotrophomonas maltophilia R551-3 5'-3' exonuclease YP_002027085.1 815322 R 391008 CDS YP_002027086.1 194364476 6477726 complement(816269..816850) 1 NC_011071.1 PFAM: nitroreductase; KEGG: xcb:XC_3390 hypothetical protein; nitroreductase 816850 6477726 Smal_0698 Stenotrophomonas maltophilia R551-3 nitroreductase YP_002027086.1 816269 R 391008 CDS YP_002027087.1 194364477 6477727 817182..819503 1 NC_011071.1 PFAM: protein of unknown function DUF1631; KEGG: xcb:XC_3388 hypothetical protein; hypothetical protein 819503 6477727 Smal_0699 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027087.1 817182 D 391008 CDS YP_002027088.1 194364478 6477728 819556..820635 1 NC_011071.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: xcv:XCV0951 putative NAD(P) transhydrogenase; alanine dehydrogenase/PNT domain-containing protein 820635 6477728 Smal_0700 Stenotrophomonas maltophilia R551-3 alanine dehydrogenase/PNT domain-containing protein YP_002027088.1 819556 D 391008 CDS YP_002027089.1 194364479 6477729 complement(820713..821174) 1 NC_011071.1 KEGG: xcv:XCV0952 putative secreted protein; hypothetical protein 821174 6477729 Smal_0701 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027089.1 820713 R 391008 CDS YP_002027090.1 194364480 6477730 complement(821179..821505) 1 NC_011071.1 KEGG: xcv:XCV0953 hypothetical protein; hypothetical protein 821505 6477730 Smal_0702 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027090.1 821179 R 391008 CDS YP_002027091.1 194364481 6477731 complement(821502..822086) 1 NC_011071.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 822086 6477731 Smal_0703 Stenotrophomonas maltophilia R551-3 RNA polymerase factor sigma-70 YP_002027091.1 821502 R 391008 CDS YP_002027092.1 194364482 6477732 822185..822505 1 NC_011071.1 KEGG: xom:XOO_3431 pyridine nucleotide transhydrogenase subunit alpha; pyridine nucleotide transhydrogenase subunit alpha 822505 6477732 Smal_0704 Stenotrophomonas maltophilia R551-3 pyridine nucleotide transhydrogenase subunit alpha YP_002027092.1 822185 D 391008 CDS YP_002027093.1 194364483 6477733 822502..823962 1 NC_011071.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: xcv:XCV0955 putative NAD(P) transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 823962 6477733 Smal_0705 Stenotrophomonas maltophilia R551-3 NAD(P)(+) transhydrogenase YP_002027093.1 822502 D 391008 CDS YP_002027094.1 194364484 6477734 complement(824062..824481) 1 NC_011071.1 KEGG: xac:XAC0925 hypothetical protein; hypothetical protein 824481 6477734 Smal_0706 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027094.1 824062 R 391008 CDS YP_002027095.1 194364485 6477735 824604..825155 1 NC_011071.1 TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: xom:XOO_3426 hypothetical protein; FeS assembly SUF system protein SufT 825155 6477735 Smal_0707 Stenotrophomonas maltophilia R551-3 FeS assembly SUF system protein SufT YP_002027095.1 824604 D 391008 CDS YP_002027096.1 194364486 6477736 825215..826309 1 NC_011071.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 826309 6477736 Smal_0708 Stenotrophomonas maltophilia R551-3 branched-chain amino acid aminotransferase YP_002027096.1 825215 D 391008 CDS YP_002027097.1 194364487 6477737 826484..827140 1 NC_011071.1 hypothetical protein 827140 6477737 Smal_0709 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027097.1 826484 D 391008 CDS YP_002027098.1 194364488 6477738 827137..827472 1 NC_011071.1 PFAM: regulatory protein ArsR; transcriptional regulator PadR family protein; KEGG: sru:SRU_1015 predicted transcription regulator, ArsR family; ArsR family transcriptional regulator 827472 6477738 Smal_0710 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002027098.1 827137 D 391008 CDS YP_002027099.1 194364489 6477739 827474..828496 1 NC_011071.1 PFAM: Peptidase M23; KEGG: sah:SaurJH1_2272 peptidase M23B; peptidase M23 828496 6477739 Smal_0711 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002027099.1 827474 D 391008 CDS YP_002027100.1 194364490 6477740 828864..830603 1 NC_011071.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: xcb:XC_3379 extracellular protease; peptidase S8/S53 subtilisin kexin sedolisin 830603 6477740 Smal_0712 Stenotrophomonas maltophilia R551-3 peptidase S8/S53 subtilisin kexin sedolisin YP_002027100.1 828864 D 391008 CDS YP_002027101.1 194364491 6477741 complement(830692..831186) 1 NC_011071.1 KEGG: xcv:XCV0963 asparaginase; asparaginase 831186 6477741 Smal_0713 Stenotrophomonas maltophilia R551-3 asparaginase YP_002027101.1 830692 R 391008 CDS YP_002027102.1 194364492 6477742 complement(831257..831592) 1 NC_011071.1 KEGG: xcb:XC_3372 hypothetical protein; hypothetical protein 831592 6477742 Smal_0714 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027102.1 831257 R 391008 CDS YP_002027103.1 194364493 6477743 complement(831589..832182) 1 NC_011071.1 TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: xom:XOO_3418 tryptophan repressor binding protein; flavoprotein WrbA 832182 6477743 Smal_0715 Stenotrophomonas maltophilia R551-3 flavoprotein WrbA YP_002027103.1 831589 R 391008 CDS YP_002027104.1 194364494 6477744 832260..833534 1 NC_011071.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function; ribonuclease BN/unknown domain fusion protein 833534 rbn 6477744 rbn Stenotrophomonas maltophilia R551-3 ribonuclease BN/unknown domain fusion protein YP_002027104.1 832260 D 391008 CDS YP_002027105.1 194364495 6477745 833531..834106 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_3369 thioredoxin; alkyl hydroperoxide reductase 834106 6477745 Smal_0717 Stenotrophomonas maltophilia R551-3 alkyl hydroperoxide reductase YP_002027105.1 833531 D 391008 CDS YP_002027106.1 194364496 6477746 complement(834627..835409) 1 NC_011071.1 PFAM: protein of unknown function DUF344; KEGG: xcb:XC_3366 transcriptional regulator; hypothetical protein 835409 6477746 Smal_0718 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027106.1 834627 R 391008 CDS YP_002027107.1 194364497 6477747 835637..836581 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpe:BP3519 transposase; integrase catalytic subunit 836581 6477747 Smal_0719 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002027107.1 835637 D 391008 CDS YP_002027108.1 194364498 6477748 complement(836591..838303) 1 NC_011071.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0943 hypothetical protein; hypothetical protein 838303 6477748 Smal_0720 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027108.1 836591 R 391008 CDS YP_002027109.1 194364499 6477749 complement(838309..839391) 1 NC_011071.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 839391 prfA 6477749 prfA Stenotrophomonas maltophilia R551-3 peptide chain release factor 1 YP_002027109.1 838309 R 391008 CDS YP_002027110.1 194364500 6477750 complement(839369..840652) 1 NC_011071.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 840652 hemA 6477750 hemA Stenotrophomonas maltophilia R551-3 glutamyl-tRNA reductase YP_002027110.1 839369 R 391008 CDS YP_002027111.1 194364501 6477751 840707..842401 1 NC_011071.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0946 hypothetical protein; hypothetical protein 842401 6477751 Smal_0723 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027111.1 840707 D 391008 CDS YP_002027112.1 194364502 6477752 842398..843057 1 NC_011071.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 843057 lolB 6477752 lolB Stenotrophomonas maltophilia R551-3 outer membrane lipoprotein LolB YP_002027112.1 842398 D 391008 CDS YP_002027113.1 194364503 6477753 843054..843923 1 NC_011071.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 843923 ipk 6477753 ipk Stenotrophomonas maltophilia R551-3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002027113.1 843054 D 391008 CDS YP_002027114.1 194364504 6477755 844150..845109 1 NC_011071.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 845109 6477755 Smal_0726 Stenotrophomonas maltophilia R551-3 ribose-phosphate pyrophosphokinase YP_002027114.1 844150 D 391008 CDS YP_002027115.1 194364505 6477826 845216..845836 1 NC_011071.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 845836 6477826 Smal_0727 Stenotrophomonas maltophilia R551-3 50S ribosomal protein L25/general stress protein Ctc YP_002027115.1 845216 D 391008 CDS YP_002027116.1 194364506 6477827 845896..846474 1 NC_011071.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 846474 6477827 Smal_0728 Stenotrophomonas maltophilia R551-3 peptidyl-tRNA hydrolase YP_002027116.1 845896 D 391008 CDS YP_002027117.1 194364507 6477828 846580..847671 1 NC_011071.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 847671 6477828 Smal_0729 Stenotrophomonas maltophilia R551-3 GTP-dependent nucleic acid-binding protein EngD YP_002027117.1 846580 D 391008 CDS YP_002027118.1 194364508 6477829 complement(848161..848343) 1 NC_011071.1 hypothetical protein 848343 6477829 Smal_0730 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027118.1 848161 R 391008 CDS YP_002027119.1 194364509 6477830 848531..848932 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_5877 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 848932 6477830 Smal_0731 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002027119.1 848531 D 391008 CDS YP_002027120.1 194364510 6477831 complement(848992..849519) 1 NC_011071.1 hypothetical protein 849519 6477831 Smal_0732 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027120.1 848992 R 391008 CDS YP_002027121.1 194364511 6477832 complement(849629..849856) 1 NC_011071.1 hypothetical protein 849856 6477832 Smal_0733 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027121.1 849629 R 391008 CDS YP_002027122.1 194364512 6477833 complement(850026..853286) 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: pfl:PFL_4376 outer membrane autotransporter; outer membrane autotransporter barrel domain-containing protein 853286 6477833 Smal_0734 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002027122.1 850026 R 391008 CDS YP_002027123.1 194364513 6477834 complement(853550..854191) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_3018 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 854191 6477834 Smal_0735 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002027123.1 853550 R 391008 CDS YP_002027124.1 194364514 6477835 complement(854188..857412) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pap:PSPA7_3017 RcsC; Hpt sensor hybrid histidine kinase 857412 6477835 Smal_0736 Stenotrophomonas maltophilia R551-3 Hpt sensor hybrid histidine kinase YP_002027124.1 854188 R 391008 CDS YP_002027125.1 194364515 6477836 complement(857538..858758) 1 NC_011071.1 PFAM: EAL domain protein; response regulator receiver; KEGG: pfo:PflO1_3039 putative diguanylate phosphodiesterase (EAL domain) with response regulator receiver modulation; response regulator receiver modulated diguanylate phosphodiesterase 858758 6477836 Smal_0737 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated diguanylate phosphodiesterase YP_002027125.1 857538 R 391008 CDS YP_002027126.1 194364516 6477837 complement(858755..861532) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pap:PSPA7_3015 kinase sensor protein; integral membrane sensor hybrid histidine kinase 861532 6477837 Smal_0738 Stenotrophomonas maltophilia R551-3 integral membrane sensor hybrid histidine kinase YP_002027126.1 858755 R 391008 CDS YP_002027127.1 194364517 6477838 complement(861694..864432) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC2193 TonB-dependent receptor; TonB-dependent receptor 864432 6477838 Smal_0739 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027127.1 861694 R 391008 CDS YP_002027128.1 194364518 6477839 864603..865622 1 NC_011071.1 PFAM: peptidase S51 dipeptidase E; KEGG: cak:Caul_1121 peptidase S51 dipeptidase E; peptidase S51 dipeptidase E 865622 6477839 Smal_0740 Stenotrophomonas maltophilia R551-3 peptidase S51 dipeptidase E YP_002027128.1 864603 D 391008 CDS YP_002027129.1 194364519 6477840 865727..866743 1 NC_011071.1 PFAM: peptidase T2 asparaginase 2; KEGG: xcv:XCV0254 asparaginase precursor; peptidase T2 asparaginase 2 866743 6477840 Smal_0741 Stenotrophomonas maltophilia R551-3 peptidase T2 asparaginase 2 YP_002027129.1 865727 D 391008 CDS YP_002027130.1 194364520 6477844 867230..868420 1 NC_011071.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 868420 6477844 Smal_0742 Stenotrophomonas maltophilia R551-3 elongation factor Tu YP_002027130.1 867230 D 391008 CDS YP_002027131.1 194364521 6477846 868649..869062 1 NC_011071.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 869062 secE 6477846 secE Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecE YP_002027131.1 868649 D 391008 CDS YP_002027132.1 194364522 6477847 869073..869633 1 NC_011071.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 869633 nusG 6477847 nusG Stenotrophomonas maltophilia R551-3 transcription antitermination protein NusG YP_002027132.1 869073 D 391008 CDS YP_002027133.1 194364523 6477848 869931..870359 1 NC_011071.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 870359 rplK 6477848 rplK Stenotrophomonas maltophilia R551-3 50S ribosomal protein L11 YP_002027133.1 869931 D 391008 CDS YP_002027134.1 194364524 6477849 870364..871062 1 NC_011071.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 871062 rplA 6477849 rplA Stenotrophomonas maltophilia R551-3 50S ribosomal protein L1 YP_002027134.1 870364 D 391008 CDS YP_002027135.1 194364525 6477850 871446..871982 1 NC_011071.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 871982 rplJ 6477850 rplJ Stenotrophomonas maltophilia R551-3 50S ribosomal protein L10 YP_002027135.1 871446 D 391008 CDS YP_002027136.1 194364526 6477851 872046..872414 1 NC_011071.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 872414 rplL 6477851 rplL Stenotrophomonas maltophilia R551-3 50S ribosomal protein L7/L12 YP_002027136.1 872046 D 391008 CDS YP_002027137.1 194364527 6477852 872779..876933 1 NC_011071.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 876933 rpoB 6477852 rpoB Stenotrophomonas maltophilia R551-3 DNA-directed RNA polymerase subunit beta YP_002027137.1 872779 D 391008 CDS YP_002027138.1 194364528 6477853 877021..881244 1 NC_011071.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 881244 6477853 Smal_0750 Stenotrophomonas maltophilia R551-3 DNA-directed RNA polymerase subunit beta' YP_002027138.1 877021 D 391008 CDS YP_002027139.1 194364529 6477854 881528..881902 1 NC_011071.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 881902 rpsL 6477854 rpsL Stenotrophomonas maltophilia R551-3 30S ribosomal protein S12 YP_002027139.1 881528 D 391008 CDS YP_002027140.1 194364530 6477855 881915..882388 1 NC_011071.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 882388 6477855 Smal_0752 Stenotrophomonas maltophilia R551-3 30S ribosomal protein S7 YP_002027140.1 881915 D 391008 CDS YP_002027141.1 194364531 6477856 882527..884668 1 NC_011071.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 884668 6477856 Smal_0753 Stenotrophomonas maltophilia R551-3 elongation factor G YP_002027141.1 882527 D 391008 CDS YP_002027142.1 194364532 6477857 884720..885910 1 NC_011071.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 885910 6477857 Smal_0754 Stenotrophomonas maltophilia R551-3 elongation factor Tu YP_002027142.1 884720 D 391008 CDS YP_002027143.1 194364533 6477858 886244..886555 1 NC_011071.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 886555 rpsJ 6477858 rpsJ Stenotrophomonas maltophilia R551-3 30S ribosomal protein S10 YP_002027143.1 886244 D 391008 CDS YP_002027144.1 194364534 6477859 886567..887217 1 NC_011071.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 887217 rplC 6477859 rplC Stenotrophomonas maltophilia R551-3 50S ribosomal protein L3 YP_002027144.1 886567 D 391008 CDS YP_002027145.1 194364535 6477860 887230..887835 1 NC_011071.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 887835 rplD 6477860 rplD Stenotrophomonas maltophilia R551-3 50S ribosomal protein L4 YP_002027145.1 887230 D 391008 CDS YP_002027146.1 194364536 6477861 887832..888131 1 NC_011071.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 888131 rplW 6477861 rplW Stenotrophomonas maltophilia R551-3 50S ribosomal protein L23 YP_002027146.1 887832 D 391008 CDS YP_002027147.1 194364537 6477862 888142..888969 1 NC_011071.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 888969 rplB 6477862 rplB Stenotrophomonas maltophilia R551-3 50S ribosomal protein L2 YP_002027147.1 888142 D 391008 CDS YP_002027148.1 194364538 6477863 888976..889245 1 NC_011071.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 889245 rpsS 6477863 rpsS Stenotrophomonas maltophilia R551-3 30S ribosomal protein S19 YP_002027148.1 888976 D 391008 CDS YP_002027149.1 194364539 6477864 889258..889593 1 NC_011071.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 889593 rplV 6477864 rplV Stenotrophomonas maltophilia R551-3 50S ribosomal protein L22 YP_002027149.1 889258 D 391008 CDS YP_002027150.1 194364540 6477865 889612..890346 1 NC_011071.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 890346 rpsC 6477865 rpsC Stenotrophomonas maltophilia R551-3 30S ribosomal protein S3 YP_002027150.1 889612 D 391008 CDS YP_002027151.1 194364541 6477866 890352..890765 1 NC_011071.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 890765 rplP 6477866 rplP Stenotrophomonas maltophilia R551-3 50S ribosomal protein L16 YP_002027151.1 890352 D 391008 CDS YP_002027152.1 194364542 6477867 890765..890950 1 NC_011071.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 890950 6477867 Smal_0764 Stenotrophomonas maltophilia R551-3 50S ribosomal protein L29 YP_002027152.1 890765 D 391008 CDS YP_002027153.1 194364543 6477868 890962..891231 1 NC_011071.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 891231 rpsQ 6477868 rpsQ Stenotrophomonas maltophilia R551-3 30S ribosomal protein S17 YP_002027153.1 890962 D 391008 CDS YP_002027154.1 194364544 6477869 891244..891612 1 NC_011071.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 891612 rplN 6477869 rplN Stenotrophomonas maltophilia R551-3 50S ribosomal protein L14 YP_002027154.1 891244 D 391008 CDS YP_002027155.1 194364545 6477870 891629..891946 1 NC_011071.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 891946 rplX 6477870 rplX Stenotrophomonas maltophilia R551-3 50S ribosomal protein L24 YP_002027155.1 891629 D 391008 CDS YP_002027156.1 194364546 6477871 891958..892500 1 NC_011071.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 892500 rplE 6477871 rplE Stenotrophomonas maltophilia R551-3 50S ribosomal protein L5 YP_002027156.1 891958 D 391008 CDS YP_002027157.1 194364547 6477872 892519..892824 1 NC_011071.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 892824 rpsN 6477872 rpsN Stenotrophomonas maltophilia R551-3 30S ribosomal protein S14 YP_002027157.1 892519 D 391008 CDS YP_002027158.1 194364548 6477873 893084..893482 1 NC_011071.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 893482 rpsH 6477873 rpsH Stenotrophomonas maltophilia R551-3 30S ribosomal protein S8 YP_002027158.1 893084 D 391008 CDS YP_002027159.1 194364549 6477874 893501..894025 1 NC_011071.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 894025 rplF 6477874 rplF Stenotrophomonas maltophilia R551-3 50S ribosomal protein L6 YP_002027159.1 893501 D 391008 CDS YP_002027160.1 194364550 6477875 894112..894465 1 NC_011071.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 894465 rplR 6477875 rplR Stenotrophomonas maltophilia R551-3 50S ribosomal protein L18 YP_002027160.1 894112 D 391008 CDS YP_002027161.1 194364551 6477876 894627..895169 1 NC_011071.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 895169 rpsE 6477876 rpsE Stenotrophomonas maltophilia R551-3 30S ribosomal protein S5 YP_002027161.1 894627 D 391008 CDS YP_002027162.1 194364552 6477877 895162..895353 1 NC_011071.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 895353 rpmD 6477877 rpmD Stenotrophomonas maltophilia R551-3 50S ribosomal protein L30 YP_002027162.1 895162 D 391008 CDS YP_002027163.1 194364553 6477878 895360..895803 1 NC_011071.1 late assembly protein; 50S ribosomal protein L15 895803 rplO 6477878 rplO Stenotrophomonas maltophilia R551-3 50S ribosomal protein L15 YP_002027163.1 895360 D 391008 CDS YP_002027164.1 194364554 6477879 895811..897178 1 NC_011071.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 897178 secY 6477879 secY Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecY YP_002027164.1 895811 D 391008 CDS YP_002027165.1 194364555 6477880 897526..897882 1 NC_011071.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 897882 rpsM 6477880 rpsM Stenotrophomonas maltophilia R551-3 30S ribosomal protein S13 YP_002027165.1 897526 D 391008 CDS YP_002027166.1 194364556 6477881 897894..898283 1 NC_011071.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 898283 6477881 Smal_0778 Stenotrophomonas maltophilia R551-3 30S ribosomal protein S11 YP_002027166.1 897894 D 391008 CDS YP_002027167.1 194364557 6477882 898299..898928 1 NC_011071.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 898928 rpsD 6477882 rpsD Stenotrophomonas maltophilia R551-3 30S ribosomal protein S4 YP_002027167.1 898299 D 391008 CDS YP_002027168.1 194364558 6477883 898984..899982 1 NC_011071.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 899982 6477883 Smal_0780 Stenotrophomonas maltophilia R551-3 DNA-directed RNA polymerase subunit alpha YP_002027168.1 898984 D 391008 CDS YP_002027169.1 194364559 6477884 900180..900563 1 NC_011071.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 900563 rplQ 6477884 rplQ Stenotrophomonas maltophilia R551-3 50S ribosomal protein L17 YP_002027169.1 900180 D 391008 CDS YP_002027170.1 194364560 6477885 900801..901307 1 NC_011071.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 901307 6477885 Smal_0782 Stenotrophomonas maltophilia R551-3 disulfide bond formation protein B YP_002027170.1 900801 D 391008 CDS YP_002027171.1 194364561 6477886 complement(901413..903539) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xom:XOO_0893 colicin I receptor; TonB-dependent receptor 903539 6477886 Smal_0783 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027171.1 901413 R 391008 CDS YP_002027172.1 194364562 6477887 903761..905152 1 NC_011071.1 KEGG: xom:XOO_0892 family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 905152 6477887 Smal_0784 Stenotrophomonas maltophilia R551-3 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002027172.1 903761 D 391008 CDS YP_002027173.1 194364563 6477888 905925..907112 1 NC_011071.1 PFAM: MscS Mechanosensitive ion channel; KEGG: xcb:XC_3312 membrane protein; mechanosensitive ion channel MscS 907112 6477888 Smal_0785 Stenotrophomonas maltophilia R551-3 mechanosensitive ion channel MscS YP_002027173.1 905925 D 391008 CDS YP_002027174.1 194364564 6477889 complement(907189..908811) 1 NC_011071.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 908811 6477889 Smal_0786 Stenotrophomonas maltophilia R551-3 amidase YP_002027174.1 907189 R 391008 CDS YP_002027175.1 194364565 6477890 complement(908853..909320) 1 NC_011071.1 KEGG: xcb:XC_3310 hypothetical protein; hypothetical protein 909320 6477890 Smal_0787 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027175.1 908853 R 391008 CDS YP_002027176.1 194364566 6477891 complement(909332..911179) 1 NC_011071.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: xcv:XCV1032 GTP-binding elongation factor protein; GTP-binding protein TypA 911179 6477891 Smal_0788 Stenotrophomonas maltophilia R551-3 GTP-binding protein TypA YP_002027176.1 909332 R 391008 CDS YP_002027177.1 194364567 6477892 911419..911910 1 NC_011071.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: xac:XAC1005 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 911910 6477892 Smal_0789 Stenotrophomonas maltophilia R551-3 peptidyl-prolyl isomerase YP_002027177.1 911419 D 391008 CDS YP_002027178.1 194364568 6477893 912029..913015 1 NC_011071.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 913015 6477893 Smal_0790 Stenotrophomonas maltophilia R551-3 malate dehydrogenase YP_002027178.1 912029 D 391008 CDS YP_002027179.1 194364569 6477894 913138..913752 1 NC_011071.1 PFAM: pseudouridine synthase; KEGG: dar:Daro_4154 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 913752 6477894 Smal_0791 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002027179.1 913138 D 391008 CDS YP_002027180.1 194364570 6477895 914433..916313 1 NC_011071.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 916313 prpE 6477895 prpE Stenotrophomonas maltophilia R551-3 propionyl-CoA synthetase YP_002027180.1 914433 D 391008 CDS YP_002027181.1 194364571 6477896 916536..917051 1 NC_011071.1 KEGG: reh:H16_A1920 hypothetical protein; hypothetical protein 917051 6477896 Smal_0793 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027181.1 916536 D 391008 CDS YP_002027182.1 194364572 6477979 917085..918140 1 NC_011071.1 KEGG: bur:Bcep18194_A6286 hypothetical protein; hypothetical protein 918140 6477979 Smal_0794 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027182.1 917085 D 391008 CDS YP_002027183.1 194364573 6477980 complement(918219..918830) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: bpa:BPP2935 glutathione S-transferase; glutathione S-transferase domain-containing protein 918830 6477980 Smal_0795 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002027183.1 918219 R 391008 CDS YP_002027184.1 194364574 6477981 complement(918915..919373) 1 NC_011071.1 PFAM: cell wall hydrolase SleB; KEGG: xcb:XC_3305 hypothetical protein; cell wall hydrolase SleB 919373 6477981 Smal_0796 Stenotrophomonas maltophilia R551-3 cell wall hydrolase SleB YP_002027184.1 918915 R 391008 CDS YP_002027185.1 194364575 6477982 complement(919671..921701) 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: xac:XAC1010 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 921701 6477982 Smal_0797 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002027185.1 919671 R 391008 CDS YP_002027186.1 194364576 6477983 complement(921775..922416) 1 NC_011071.1 PFAM: protein of unknown function DUF161; KEGG: cmi:CMM_0762 hypothetical protein; hypothetical protein 922416 6477983 Smal_0798 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027186.1 921775 R 391008 CDS YP_002027187.1 194364577 6477984 complement(922654..923673) 1 NC_011071.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xac:XAC1011 oxidoreductase; zinc-binding alcohol dehydrogenase family protein 923673 6477984 Smal_0799 Stenotrophomonas maltophilia R551-3 zinc-binding alcohol dehydrogenase family protein YP_002027187.1 922654 R 391008 CDS YP_002027188.1 194364578 6477985 924031..925119 1 NC_011071.1 PFAM: OmpA/MotB domain protein; KEGG: xac:XAC1012 outer membrane protein; OmpA/MotB domain-containing protein 925119 6477985 Smal_0800 Stenotrophomonas maltophilia R551-3 OmpA/MotB domain-containing protein YP_002027188.1 924031 D 391008 CDS YP_002027189.1 194364579 6477986 925349..925855 1 NC_011071.1 KEGG: xom:XOO_3489 hypothetical protein; hypothetical protein 925855 6477986 Smal_0801 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027189.1 925349 D 391008 CDS YP_002027190.1 194364580 6477987 925876..926682 1 NC_011071.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xom:XOO_3488 pseudouridylate synthase; pseudouridine synthase 926682 6477987 Smal_0802 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002027190.1 925876 D 391008 CDS YP_002027191.1 194364581 6477988 926767..927102 1 NC_011071.1 KEGG: xfn:XfasM23_0617 hypothetical protein; hypothetical protein 927102 6477988 Smal_0803 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027191.1 926767 D 391008 CDS YP_002027192.1 194364582 6477989 complement(927202..928410) 1 NC_011071.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 928410 6477989 Smal_0804 Stenotrophomonas maltophilia R551-3 2-amino-3-ketobutyrate coenzyme A ligase YP_002027192.1 927202 R 391008 CDS YP_002027193.1 194364583 6477990 928616..929311 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcv:XCV1051 putative secreted protein; hypothetical protein 929311 6477990 Smal_0805 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027193.1 928616 D 391008 CDS YP_002027194.1 194364584 6477991 complement(929472..930509) 1 NC_011071.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 930509 tdh 6477991 tdh Stenotrophomonas maltophilia R551-3 L-threonine 3-dehydrogenase YP_002027194.1 929472 R 391008 CDS YP_002027195.1 194364585 6477992 930802..932964 1 NC_011071.1 KEGG: xom:XOO_3477 hypothetical protein; hypothetical protein 932964 6477992 Smal_0807 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027195.1 930802 D 391008 CDS YP_002027196.1 194364586 6477993 933164..933808 1 NC_011071.1 PFAM: Phosphoglycerate mutase; KEGG: xcb:XC_3287 phosphoglycerate mutase; phosphoglycerate mutase 933808 6477993 Smal_0808 Stenotrophomonas maltophilia R551-3 phosphoglycerate mutase YP_002027196.1 933164 D 391008 CDS YP_002027197.1 194364587 6477994 933850..935121 1 NC_011071.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: xcb:XC_3285 folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 935121 6477994 Smal_0809 Stenotrophomonas maltophilia R551-3 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_002027197.1 933850 D 391008 CDS YP_002027198.1 194364588 6477995 935203..936243 1 NC_011071.1 PFAM: Sporulation domain protein; KEGG: xcb:XC_3284 hypothetical protein; sporulation domain-containing protein 936243 6477995 Smal_0810 Stenotrophomonas maltophilia R551-3 sporulation domain-containing protein YP_002027198.1 935203 D 391008 CDS YP_002027199.1 194364589 6477996 936290..937069 1 NC_011071.1 PFAM: Colicin V production protein; KEGG: xcb:XC_3283 colicin V production protein; colicin V production protein 937069 6477996 Smal_0811 Stenotrophomonas maltophilia R551-3 colicin V production protein YP_002027199.1 936290 D 391008 CDS YP_002027200.1 194364590 6477997 937100..938566 1 NC_011071.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 938566 6477997 Smal_0812 Stenotrophomonas maltophilia R551-3 amidophosphoribosyltransferase YP_002027200.1 937100 D 391008 CDS YP_002027201.1 194364591 6477998 938576..939400 1 NC_011071.1 PFAM: protein of unknown function DUF455; KEGG: xcb:XC_3281 hypothetical protein; hypothetical protein 939400 6477998 Smal_0813 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027201.1 938576 D 391008 CDS YP_002027202.1 194364592 6477999 complement(939468..940925) 1 NC_011071.1 KEGG: pfo:PflO1_5597 rhs element Vgr protein; rhs element Vgr protein 940925 6477999 Smal_0814 Stenotrophomonas maltophilia R551-3 rhs element Vgr protein YP_002027202.1 939468 R 391008 CDS YP_002027203.1 194364593 6478000 941151..942404 1 NC_011071.1 KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; peptidyl-Asp metalloendopeptidase 942404 6478000 Smal_0815 Stenotrophomonas maltophilia R551-3 peptidyl-Asp metalloendopeptidase YP_002027203.1 941151 D 391008 CDS YP_002027204.1 194364594 6478001 complement(942492..943238) 1 NC_011071.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 943238 6478001 Smal_0816 Stenotrophomonas maltophilia R551-3 UDP-2,3-diacylglucosamine hydrolase YP_002027204.1 942492 R 391008 CDS YP_002027205.1 194364595 6478002 complement(943399..943938) 1 NC_011071.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: xcb:XC_3277 hypothetical protein; PA-phosphatase-like phosphoesterase 943938 6478002 Smal_0817 Stenotrophomonas maltophilia R551-3 PA-phosphatase-like phosphoesterase YP_002027205.1 943399 R 391008 CDS YP_002027206.1 194364596 6478003 complement(943919..945064) 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: xac:XAC1038 glycosyl transferase; group 1 glycosyl transferase 945064 6478003 Smal_0818 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002027206.1 943919 R 391008 CDS YP_002027207.1 194364597 6478004 complement(945209..948133) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor plug 948133 6478004 Smal_0819 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002027207.1 945209 R 391008 CDS YP_002027208.1 194364598 6478005 complement(948466..951393) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor 951393 6478005 Smal_0820 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027208.1 948466 R 391008 CDS YP_002027209.1 194364599 6478006 complement(951688..953214) 1 NC_011071.1 PFAM: Ppx/GppA phosphatase; KEGG: xcb:XC_3275 exopolyphosphatase; Ppx/GppA phosphatase 953214 6478006 Smal_0821 Stenotrophomonas maltophilia R551-3 Ppx/GppA phosphatase YP_002027209.1 951688 R 391008 CDS YP_002027210.1 194364600 6478007 complement(953571..955658) 1 NC_011071.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 955658 6478007 Smal_0822 Stenotrophomonas maltophilia R551-3 polyphosphate kinase YP_002027210.1 953571 R 391008 CDS YP_002027211.1 194364601 6478008 complement(955663..956994) 1 NC_011071.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3273 two-component system sensor protein; PAS/PAC sensor signal transduction histidine kinase 956994 6478008 Smal_0823 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor signal transduction histidine kinase YP_002027211.1 955663 R 391008 CDS YP_002027212.1 194364602 6478009 complement(957101..957790) 1 NC_011071.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcb:XC_3272 two-component system regulatory protein; winged helix family two component transcriptional regulator 957790 6478009 Smal_0824 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027212.1 957101 R 391008 CDS YP_002027213.1 194364603 6478010 complement(957907..959607) 1 NC_011071.1 PFAM: peptidase M48 Ste24p; KEGG: xcb:XC_3271 hypothetical protein; peptidase M48 Ste24p 959607 6478010 Smal_0825 Stenotrophomonas maltophilia R551-3 peptidase M48 Ste24p YP_002027213.1 957907 R 391008 CDS YP_002027214.1 194364604 6478011 959696..959986 1 NC_011071.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: xac:XAC1044 glutaredoxin; glutaredoxin 3 959986 6478011 Smal_0826 Stenotrophomonas maltophilia R551-3 glutaredoxin 3 YP_002027214.1 959696 D 391008 CDS YP_002027215.1 194364605 6478012 959983..960375 1 NC_011071.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: xcb:XC_3269 hypothetical protein; alkylhydroperoxidase-like protein 960375 6478012 Smal_0827 Stenotrophomonas maltophilia R551-3 alkylhydroperoxidase-like protein YP_002027215.1 959983 D 391008 CDS YP_002027216.1 194364606 6478013 960733..961737 1 NC_011071.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 961737 6478013 Smal_0828 Stenotrophomonas maltophilia R551-3 isocitrate dehydrogenase YP_002027216.1 960733 D 391008 CDS YP_002027217.1 194364607 6478014 961997..962731 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: bcm:Bcenmc03_5543 isochorismatase hydrolase; isochorismatase hydrolase 962731 6478014 Smal_0829 Stenotrophomonas maltophilia R551-3 isochorismatase hydrolase YP_002027217.1 961997 D 391008 CDS YP_002027218.1 194364608 6478015 962815..963723 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcm:Bcenmc03_4209 transcriptional regulator, LysR family; LysR family transcriptional regulator 963723 6478015 Smal_0830 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027218.1 962815 D 391008 CDS YP_002027219.1 194364609 6478016 963749..964510 1 NC_011071.1 PFAM: protein of unknown function DUF81; KEGG: dac:Daci_2500 protein of unknown function DUF81; hypothetical protein 964510 6478016 Smal_0831 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027219.1 963749 D 391008 CDS YP_002027220.1 194364610 6478017 complement(964514..965134) 1 NC_011071.1 KEGG: aav:Aave_0081 hypothetical protein; hypothetical protein 965134 6478017 Smal_0832 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027220.1 964514 R 391008 CDS YP_002027221.1 194364611 6478018 complement(965289..966047) 1 NC_011071.1 PFAM: protein of unknown function DUF1112; KEGG: xcb:XC_3267 hypothetical protein; hypothetical protein 966047 6478018 Smal_0833 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027221.1 965289 R 391008 CDS YP_002027222.1 194364612 6478024 967324..967692 1 NC_011071.1 KEGG: tbr:Tb10.70.3190 hypothetical protein; hypothetical protein 967692 6478024 Smal_0834 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027222.1 967324 D 391008 CDS YP_002027223.1 194364613 6478026 968106..969401 1 NC_011071.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 969401 tig 6478026 tig Stenotrophomonas maltophilia R551-3 trigger factor YP_002027223.1 968106 D 391008 CDS YP_002027224.1 194364614 6478027 969478..970104 1 NC_011071.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 970104 clpP 6478027 clpP Stenotrophomonas maltophilia R551-3 ATP-dependent Clp protease proteolytic subunit YP_002027224.1 969478 D 391008 CDS YP_002027225.1 194364615 6478028 970231..971520 1 NC_011071.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 971520 clpX 6478028 clpX Stenotrophomonas maltophilia R551-3 ATP-dependent protease ATP-binding subunit ClpX YP_002027225.1 970231 D 391008 CDS YP_002027226.1 194364616 6478029 971663..974113 1 NC_011071.1 KEGG: xcb:XC_3263 ATP-dependent serine proteinase La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 974113 6478029 Smal_0838 Stenotrophomonas maltophilia R551-3 ATP-dependent protease La YP_002027226.1 971663 D 391008 CDS YP_002027227.1 194364617 6478030 974331..974603 1 NC_011071.1 PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV1084 histone-like protein; histone family protein DNA-binding protein 974603 6478030 Smal_0839 Stenotrophomonas maltophilia R551-3 histone family protein DNA-binding protein YP_002027227.1 974331 D 391008 CDS YP_002027228.1 194364618 6478036 975495..977450 1 NC_011071.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xcv:XCV1085 peptidylprolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 977450 6478036 Smal_0840 Stenotrophomonas maltophilia R551-3 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002027228.1 975495 D 391008 CDS YP_002027229.1 194364619 6478037 complement(977660..978859) 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: xcv:XCV1086 membrane-bound murein hydrolase D; Lytic transglycosylase 978859 6478037 Smal_0841 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002027229.1 977660 R 391008 CDS YP_002027230.1 194364620 6478038 complement(978856..979620) 1 NC_011071.1 KEGG: xcb:XC_3258 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 979620 6478038 Smal_0842 Stenotrophomonas maltophilia R551-3 hydroxyacylglutathione hydrolase YP_002027230.1 978856 R 391008 CDS YP_002027231.1 194364621 6478039 979632..980276 1 NC_011071.1 KEGG: xcb:XC_3257 hypothetical protein; hypothetical protein 980276 6478039 Smal_0843 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027231.1 979632 D 391008 CDS YP_002027232.1 194364622 6478040 980290..980742 1 NC_011071.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 980742 rnhA 6478040 rnhA Stenotrophomonas maltophilia R551-3 ribonuclease H YP_002027232.1 980290 D 391008 CDS YP_002027233.1 194364623 6478041 980747..981478 1 NC_011071.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 981478 6478041 Smal_0845 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit epsilon YP_002027233.1 980747 D 391008 CDS YP_002027234.1 194364624 6478042 complement(981548..982252) 1 NC_011071.1 PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: xcb:XC_3254 protein phosphatase; protein serine/threonine phosphatase 982252 6478042 Smal_0846 Stenotrophomonas maltophilia R551-3 protein serine/threonine phosphatase YP_002027234.1 981548 R 391008 CDS YP_002027235.1 194364625 6478044 complement(983834..986848) 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: xau:Xaut_3532 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 986848 6478044 Smal_0847 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002027235.1 983834 R 391008 CDS YP_002027236.1 194364626 6478045 987140..987544 1 NC_011071.1 KEGG: xcb:XC_3253 hypothetical protein; hypothetical protein 987544 6478045 Smal_0848 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027236.1 987140 D 391008 CDS YP_002027237.1 194364627 6478046 complement(987563..988609) 1 NC_011071.1 PFAM: glycosyl transferase family 9; KEGG: xac:XAC1094 saccharide biosynthesis regulatory protein; glycosyl transferase family protein 988609 6478046 Smal_0849 Stenotrophomonas maltophilia R551-3 glycosyl transferase family protein YP_002027237.1 987563 R 391008 CDS YP_002027238.1 194364628 6478047 988630..989379 1 NC_011071.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 989379 6478047 Smal_0850 Stenotrophomonas maltophilia R551-3 3-deoxy-D-manno-octulosonic-acid kinase YP_002027238.1 988630 D 391008 CDS YP_002027239.1 194364629 6478048 989379..990146 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: xac:XAC1096 hypothetical protein; beta-lactamase domain-containing protein 990146 6478048 Smal_0851 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002027239.1 989379 D 391008 CDS YP_002027240.1 194364630 6478049 990143..990532 1 NC_011071.1 KEGG: xcb:XC_3248 hypothetical protein; hypothetical protein 990532 6478049 Smal_0852 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027240.1 990143 D 391008 CDS YP_002027241.1 194364631 6478051 991036..991353 1 NC_011071.1 PFAM: small multidrug resistance protein; KEGG: dac:Daci_0685 small multidrug resistance protein; small multidrug resistance protein 991353 6478051 Smal_0853 Stenotrophomonas maltophilia R551-3 small multidrug resistance protein YP_002027241.1 991036 D 391008 CDS YP_002027242.1 194364632 6478052 991711..1002600 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein; KEGG: bmu:Bmul_4115 outer membrane autotransporter barrel domain protein; outer membrane autotransporter barrel domain-containing protein 1002600 6478052 Smal_0854 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002027242.1 991711 D 391008 CDS YP_002027243.1 194364633 6478053 complement(1002658..1003101) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_3986 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1003101 6478053 Smal_0855 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027243.1 1002658 R 391008 CDS YP_002027244.1 194364634 6478054 1003222..1004016 1 NC_011071.1 KEGG: sbm:Shew185_3483 hypothetical protein; hypothetical protein 1004016 6478054 Smal_0856 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027244.1 1003222 D 391008 CDS YP_002027245.1 194364635 6478056 1004691..1006736 1 NC_011071.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1006736 6478056 Smal_0857 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunits gamma and tau YP_002027245.1 1004691 D 391008 CDS YP_002027246.1 194364636 6478057 1006743..1007063 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcv:XCV1128 hypothetical protein; hypothetical protein 1007063 6478057 Smal_0858 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027246.1 1006743 D 391008 CDS YP_002027247.1 194364637 6478058 1007175..1007774 1 NC_011071.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1007774 recR 6478058 recR Stenotrophomonas maltophilia R551-3 recombination protein RecR YP_002027247.1 1007175 D 391008 CDS YP_002027248.1 194364638 6478059 1007842..1008201 1 NC_011071.1 PFAM: histidine triad (HIT) protein; KEGG: xfn:XfasM23_1120 histidine triad (HIT) protein; histidine triad (HIT) protein 1008201 6478059 Smal_0860 Stenotrophomonas maltophilia R551-3 histidine triad (HIT) protein YP_002027248.1 1007842 D 391008 CDS YP_002027249.1 194364639 6478060 complement(1008282..1008809) 1 NC_011071.1 PFAM: outer membrane lipoprotein Slp; KEGG: xcb:XC_3240 outer membrane protein Slp; outer membrane lipoprotein Slp 1008809 6478060 Smal_0861 Stenotrophomonas maltophilia R551-3 outer membrane lipoprotein Slp YP_002027249.1 1008282 R 391008 CDS YP_002027250.1 194364640 6478134 complement(1008806..1010755) 1 NC_011071.1 PFAM: transglutaminase domain protein; KEGG: xcv:XCV1132 putative transglutaminase-like superfamily protein; transglutaminase domain-containing protein 1010755 6478134 Smal_0862 Stenotrophomonas maltophilia R551-3 transglutaminase domain-containing protein YP_002027250.1 1008806 R 391008 CDS YP_002027251.1 194364641 6478135 complement(1010748..1011692) 1 NC_011071.1 PFAM: protein of unknown function DUF58; KEGG: xom:XOO_0970 hypothetical protein; hypothetical protein 1011692 6478135 Smal_0863 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027251.1 1010748 R 391008 CDS YP_002027252.1 194364642 6478136 complement(1011695..1012648) 1 NC_011071.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV1134 MoxR-like ATPase; ATPase 1012648 6478136 Smal_0864 Stenotrophomonas maltophilia R551-3 ATPase YP_002027252.1 1011695 R 391008 CDS YP_002027253.1 194364643 6478137 1012691..1014526 1 NC_011071.1 KEGG: xcb:XC_3236 hypothetical protein; hypothetical protein 1014526 6478137 Smal_0865 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027253.1 1012691 D 391008 CDS YP_002027254.1 194364644 6478138 complement(1014647..1015216) 1 NC_011071.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: xom:XOO_0800 Maf-like protein; maf protein 1015216 6478138 Smal_0866 Stenotrophomonas maltophilia R551-3 maf protein YP_002027254.1 1014647 R 391008 CDS YP_002027255.1 194364645 6478139 1015330..1015839 1 NC_011071.1 PFAM: protein of unknown function DUF177; KEGG: xcb:XC_3231 hypothetical protein; hypothetical protein 1015839 6478139 Smal_0867 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027255.1 1015330 D 391008 CDS YP_002027256.1 194364646 6478140 1015948..1016142 1 NC_011071.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1016142 rpmF 6478140 rpmF Stenotrophomonas maltophilia R551-3 50S ribosomal protein L32 YP_002027256.1 1015948 D 391008 CDS YP_002027257.1 194364647 6478141 1016234..1017211 1 NC_011071.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1017211 6478141 Smal_0869 Stenotrophomonas maltophilia R551-3 3-oxoacyl-ACP synthase YP_002027257.1 1016234 D 391008 CDS YP_002027258.1 194364648 6478142 1017288..1018070 1 NC_011071.1 KEGG: ngo:NGO0688 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 1018070 6478142 Smal_0870 Stenotrophomonas maltophilia R551-3 Mn2+-dependent serine/threonine protein kinase YP_002027258.1 1017288 D 391008 CDS YP_002027259.1 194364649 6478143 1018239..1019183 1 NC_011071.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: xcb:XC_3228 acyl-carrier-protein S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1019183 6478143 Smal_0871 Stenotrophomonas maltophilia R551-3 malonyl CoA-acyl carrier protein transacylase YP_002027259.1 1018239 D 391008 CDS YP_002027260.1 194364650 6478144 1019266..1020009 1 NC_011071.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1020009 fabG 6478144 fabG Stenotrophomonas maltophilia R551-3 3-ketoacyl-ACP reductase YP_002027260.1 1019266 D 391008 CDS YP_002027261.1 194364651 6478145 1020162..1020401 1 NC_011071.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1020401 acpP 6478145 acpP Stenotrophomonas maltophilia R551-3 acyl carrier protein YP_002027261.1 1020162 D 391008 CDS YP_002027262.1 194364652 6478146 1020545..1021807 1 NC_011071.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1021807 6478146 Smal_0874 Stenotrophomonas maltophilia R551-3 3-oxoacyl-(acyl carrier protein) synthase II YP_002027262.1 1020545 D 391008 CDS YP_002027263.1 194364653 6478147 1021900..1023264 1 NC_011071.1 KEGG: xcb:XC_3224 hypothetical protein; TIGRFAM: para-aminobenzoate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; hypothetical protein 1023264 6478147 Smal_0875 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027263.1 1021900 D 391008 CDS YP_002027264.1 194364654 6478148 1023462..1024523 1 NC_011071.1 PFAM: aminodeoxychorismate lyase; KEGG: xcb:XC_3223 hypothetical protein; aminodeoxychorismate lyase 1024523 6478148 Smal_0876 Stenotrophomonas maltophilia R551-3 aminodeoxychorismate lyase YP_002027264.1 1023462 D 391008 CDS YP_002027265.1 194364655 6478149 1024520..1025185 1 NC_011071.1 PFAM: thymidylate kinase; KEGG: pmy:Pmen_1633 thymidylate kinase; dTMP kinase 1025185 6478149 Smal_0877 Stenotrophomonas maltophilia R551-3 dTMP kinase YP_002027265.1 1024520 D 391008 CDS YP_002027266.1 194364656 6478150 1025182..1026138 1 NC_011071.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1026138 6478150 Smal_0878 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit delta' YP_002027266.1 1025182 D 391008 CDS YP_002027267.1 194364657 6478151 1026135..1026488 1 NC_011071.1 PFAM: type IV pilus assembly PilZ; KEGG: xcb:XC_3221 type IV fimbriae assembly protein; type IV pilus assembly PilZ 1026488 6478151 Smal_0879 Stenotrophomonas maltophilia R551-3 type IV pilus assembly PilZ YP_002027267.1 1026135 D 391008 CDS YP_002027268.1 194364658 6478153 1026985..1027365 1 NC_011071.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: pfo:PflO1_3399 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 1027365 6478153 Smal_0880 Stenotrophomonas maltophilia R551-3 4-oxalocrotonate tautomerase YP_002027268.1 1026985 D 391008 CDS YP_002027269.1 194364659 6478154 complement(1027397..1028470) 1 NC_011071.1 PFAM: late control D family protein; KEGG: xfa:XF2479 hypothetical protein; late control D family protein 1028470 6478154 Smal_0881 Stenotrophomonas maltophilia R551-3 late control D family protein YP_002027269.1 1027397 R 391008 CDS YP_002027270.1 194364660 6478155 complement(1028461..1028676) 1 NC_011071.1 PFAM: tail X family protein; KEGG: xfa:XF2480 phage-related tail protein; tail X family protein 1028676 6478155 Smal_0882 Stenotrophomonas maltophilia R551-3 tail X family protein YP_002027270.1 1028461 R 391008 CDS YP_002027271.1 194364661 6478156 complement(1028660..1029127) 1 NC_011071.1 PFAM: P2 GpU family protein; KEGG: xfm:Xfasm12_1132 phage-related tail protein; P2 GpU family protein 1029127 6478156 Smal_0883 Stenotrophomonas maltophilia R551-3 P2 GpU family protein YP_002027271.1 1028660 R 391008 CDS YP_002027272.1 194364662 6478157 complement(1029130..1031601) 1 NC_011071.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: spe:Spro_4911 phage tail tape measure protein, TP901 family; phage tail tape measure protein, TP901 family 1031601 6478157 Smal_0884 Stenotrophomonas maltophilia R551-3 phage tail tape measure protein, TP901 family YP_002027272.1 1029130 R 391008 CDS YP_002027273.1 194364663 6478158 complement(1031722..1032012) 1 NC_011071.1 KEGG: xfn:XfasM23_1156 hypothetical protein; hypothetical protein 1032012 6478158 Smal_0885 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027273.1 1031722 R 391008 CDS YP_002027274.1 194364664 6478159 complement(1032093..1032596) 1 NC_011071.1 TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: xfa:XF2484 hypothetical protein; phage major tail tube protein 1032596 6478159 Smal_0886 Stenotrophomonas maltophilia R551-3 phage major tail tube protein YP_002027274.1 1032093 R 391008 CDS YP_002027275.1 194364665 6478160 complement(1032599..1033801) 1 NC_011071.1 PFAM: tail sheath protein; KEGG: sit:TM1040_1284 phage tail sheath protein; tail sheath protein 1033801 6478160 Smal_0887 Stenotrophomonas maltophilia R551-3 tail sheath protein YP_002027275.1 1032599 R 391008 CDS YP_002027276.1 194364666 6478161 complement(1033908..1034567) 1 NC_011071.1 KEGG: xac:XAC2659 hypothetical protein; hypothetical protein 1034567 6478161 Smal_0888 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027276.1 1033908 R 391008 CDS YP_002027277.1 194364667 6478162 complement(1034569..1036539) 1 NC_011071.1 KEGG: xoo:XOO1698 hypothetical protein; hypothetical protein 1036539 6478162 Smal_0889 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027277.1 1034569 R 391008 CDS YP_002027278.1 194364668 6478163 complement(1036547..1037848) 1 NC_011071.1 TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: xac:XAC2656 phage-related tail protein; phage tail protein I 1037848 6478163 Smal_0890 Stenotrophomonas maltophilia R551-3 phage tail protein I YP_002027278.1 1036547 R 391008 CDS YP_002027279.1 194364669 6478164 complement(1037841..1038737) 1 NC_011071.1 PFAM: Baseplate J family protein; KEGG: xac:XAC2655 phage-related baseplate assembly protein; baseplate J family protein 1038737 6478164 Smal_0891 Stenotrophomonas maltophilia R551-3 baseplate J family protein YP_002027279.1 1037841 R 391008 CDS YP_002027280.1 194364670 6478165 complement(1038740..1039078) 1 NC_011071.1 PFAM: GPW/gp25 family protein; KEGG: sit:TM1040_1292 gpW/GP25; GPW/gp25 family protein 1039078 6478165 Smal_0892 Stenotrophomonas maltophilia R551-3 GPW/gp25 family protein YP_002027280.1 1038740 R 391008 CDS YP_002027281.1 194364671 6478166 complement(1039131..1039721) 1 NC_011071.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: xfm:Xfasm12_1145 phage-related baseplate assembly protein; phage baseplate assembly protein V 1039721 6478166 Smal_0893 Stenotrophomonas maltophilia R551-3 phage baseplate assembly protein V YP_002027281.1 1039131 R 391008 CDS YP_002027282.1 194364672 6478167 complement(1039718..1040272) 1 NC_011071.1 KEGG: xfa:XF2493 hypothetical protein; hypothetical protein 1040272 6478167 Smal_0894 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027282.1 1039718 R 391008 CDS YP_002027283.1 194364673 6478168 complement(1040625..1041002) 1 NC_011071.1 hypothetical protein 1041002 6478168 Smal_0895 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027283.1 1040625 R 391008 CDS YP_002027284.1 194364674 6478169 complement(1040999..1041484) 1 NC_011071.1 PFAM: glycoside hydrolase family 24; KEGG: rso:RSc1700 probable bacteriophage endolysin protein; lysozyme 1041484 6478169 Smal_0896 Stenotrophomonas maltophilia R551-3 lysozyme YP_002027284.1 1040999 R 391008 CDS YP_002027285.1 194364675 6478170 complement(1041481..1041831) 1 NC_011071.1 KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein 1041831 6478170 Smal_0897 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027285.1 1041481 R 391008 CDS YP_002027286.1 194364676 6478171 complement(1041828..1042277) 1 NC_011071.1 KEGG: xfn:XfasM23_1179 hypothetical protein; hypothetical protein 1042277 6478171 Smal_0898 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027286.1 1041828 R 391008 CDS YP_002027287.1 194364677 6478172 complement(1042612..1042995) 1 NC_011071.1 hypothetical protein 1042995 6478172 Smal_0899 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027287.1 1042612 R 391008 CDS YP_002027288.1 194364678 6478173 complement(1043148..1043786) 1 NC_011071.1 KEGG: pna:Pnap_2274 hypothetical protein; hypothetical protein 1043786 6478173 Smal_0900 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027288.1 1043148 R 391008 CDS YP_002027289.1 194364679 6478174 complement(1043828..1044055) 1 NC_011071.1 hypothetical protein 1044055 6478174 Smal_0901 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027289.1 1043828 R 391008 CDS YP_002027290.1 194364680 6478175 complement(1044130..1044405) 1 NC_011071.1 hypothetical protein 1044405 6478175 Smal_0902 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027290.1 1044130 R 391008 CDS YP_002027291.1 194364681 6478176 complement(1044406..1046742) 1 NC_011071.1 PFAM: virulence-associated E family protein; KEGG: ppu:PP_3038 pyocin R2_PP, TraC domain protein; virulence-associated E family protein 1046742 6478176 Smal_0903 Stenotrophomonas maltophilia R551-3 virulence-associated E family protein YP_002027291.1 1044406 R 391008 CDS YP_002027292.1 194364682 6478177 1047228..1047452 1 NC_011071.1 hypothetical protein 1047452 6478177 Smal_0904 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027292.1 1047228 D 391008 CDS YP_002027293.1 194364683 6478178 1047464..1047718 1 NC_011071.1 hypothetical protein 1047718 6478178 Smal_0905 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027293.1 1047464 D 391008 CDS YP_002027294.1 194364684 6478179 1047935..1048330 1 NC_011071.1 KEGG: xom:XOO_2682 hypothetical protein; hypothetical protein 1048330 6478179 Smal_0906 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027294.1 1047935 D 391008 CDS YP_002027295.1 194364685 6478180 1048460..1050598 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0405 TonB-dependent receptor; TonB-dependent siderophore receptor 1050598 6478180 Smal_0907 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027295.1 1048460 D 391008 CDS YP_002027296.1 194364686 6478181 1050610..1052109 1 NC_011071.1 PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_0065 hypothetical protein; PepSY-associated TM helix domain-containing protein 1052109 6478181 Smal_0908 Stenotrophomonas maltophilia R551-3 PepSY-associated TM helix domain-containing protein YP_002027296.1 1050610 D 391008 CDS YP_002027297.1 194364687 6478182 complement(1052119..1053252) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3280 transporter, putative; major facilitator superfamily protein 1053252 6478182 Smal_0909 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027297.1 1052119 R 391008 CDS YP_002027298.1 194364688 6478183 complement(1053264..1054040) 1 NC_011071.1 PFAM: regulatory protein DeoR; KEGG: atc:AGR_C_4939 hypothetical protein; DeoR family transcriptional regulator 1054040 6478183 Smal_0910 Stenotrophomonas maltophilia R551-3 DeoR family transcriptional regulator YP_002027298.1 1053264 R 391008 CDS YP_002027299.1 194364689 6478184 1054199..1054846 1 NC_011071.1 PFAM: pentapeptide repeat protein; KEGG: spe:Spro_2059 pentapeptide repeat protein; pentapeptide repeat-containing protein 1054846 6478184 Smal_0911 Stenotrophomonas maltophilia R551-3 pentapeptide repeat-containing protein YP_002027299.1 1054199 D 391008 CDS YP_002027300.1 194364690 6478185 complement(1054850..1055524) 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpb:RPB_3655 SAM binding protein; type 12 methyltransferase 1055524 6478185 Smal_0912 Stenotrophomonas maltophilia R551-3 type 12 methyltransferase YP_002027300.1 1054850 R 391008 CDS YP_002027301.1 194364691 6478186 complement(1055623..1057002) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppw:PputW619_3084 transcriptional regulator, GntR family with aminotransferase domain; GntR family transcriptional regulator 1057002 6478186 Smal_0913 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002027301.1 1055623 R 391008 CDS YP_002027302.1 194364692 6478187 1057136..1057999 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dac:Daci_1891 protein of unknown function DUF6 transmembrane; hypothetical protein 1057999 6478187 Smal_0914 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027302.1 1057136 D 391008 CDS YP_002027303.1 194364693 6478188 complement(1058039..1058983) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2016 transcriptional regulator, LysR family; LysR family transcriptional regulator 1058983 6478188 Smal_0915 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027303.1 1058039 R 391008 CDS YP_002027304.1 194364694 6478189 1059082..1060599 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2916 major facilitator family transporter; major facilitator superfamily protein 1060599 6478189 Smal_0916 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027304.1 1059082 D 391008 CDS YP_002027305.1 194364695 6478190 complement(1060583..1062673) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3560 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1062673 6478190 Smal_0917 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027305.1 1060583 R 391008 CDS YP_002027306.1 194364696 6478191 complement(1062773..1064158) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_2572 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1064158 6478191 Smal_0918 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027306.1 1062773 R 391008 CDS YP_002027307.1 194364697 6478192 complement(1064136..1064819) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3127 response regulator receiver:transcriptional regulatory protein, C-terminal; winged helix family two component transcriptional regulator 1064819 6478192 Smal_0919 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027307.1 1064136 R 391008 CDS YP_002027308.1 194364698 6478193 1064973..1066151 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2381 component of acridine efflux pump; RND family efflux transporter MFP subunit 1066151 6478193 Smal_0920 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002027308.1 1064973 D 391008 CDS YP_002027309.1 194364699 6478194 1066156..1069257 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nar:Saro_1219 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1069257 6478194 Smal_0921 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002027309.1 1066156 D 391008 CDS YP_002027310.1 194364700 6478195 complement(1069528..1069932) 1 NC_011071.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aha:AHA_3760 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1069932 6478195 Smal_0922 Stenotrophomonas maltophilia R551-3 glutathione-dependent formaldehyde-activating protein YP_002027310.1 1069528 R 391008 CDS YP_002027311.1 194364701 6478196 1070104..1071078 1 NC_011071.1 KEGG: xcv:XCV0860 hypothetical protein; hypothetical protein 1071078 6478196 Smal_0923 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027311.1 1070104 D 391008 CDS YP_002027312.1 194364702 6478197 1071078..1073102 1 NC_011071.1 KEGG: xcb:XC_3476 hypothetical protein; hypothetical protein 1073102 6478197 Smal_0924 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027312.1 1071078 D 391008 CDS YP_002027313.1 194364703 6478198 complement(1073226..1074563) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV3150 major facilitator superfamily protein; major facilitator superfamily protein 1074563 6478198 Smal_0925 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027313.1 1073226 R 391008 CDS YP_002027314.1 194364704 6478199 1074677..1075111 1 NC_011071.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: xac:XAC3000 transcriptional regulator SoxR family; MerR family transcriptional regulator 1075111 6478199 Smal_0926 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002027314.1 1074677 D 391008 CDS YP_002027315.1 194364705 6478200 complement(1075184..1075786) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3331 short chain dehydrogenase; short chain dehydrogenase 1075786 6478200 Smal_0927 Stenotrophomonas maltophilia R551-3 short chain dehydrogenase YP_002027315.1 1075184 R 391008 CDS YP_002027316.1 194364706 6478201 1075887..1076762 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_3137 transcriptional regulator, LysR family; LysR family transcriptional regulator 1076762 6478201 Smal_0928 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027316.1 1075887 D 391008 CDS YP_002027317.1 194364707 6478202 complement(1076822..1077643) 1 NC_011071.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1077643 6478202 Smal_0929 Stenotrophomonas maltophilia R551-3 pyrroline-5-carboxylate reductase YP_002027317.1 1076822 R 391008 CDS YP_002027318.1 194364708 6478203 complement(1077662..1078339) 1 NC_011071.1 PFAM: alanine racemase domain protein; KEGG: xcv:XCV3069 hypothetical protein; alanine racemase domain-containing protein 1078339 6478203 Smal_0930 Stenotrophomonas maltophilia R551-3 alanine racemase domain-containing protein YP_002027318.1 1077662 R 391008 CDS YP_002027319.1 194364709 6478204 1078427..1079464 1 NC_011071.1 KEGG: xac:XAC2924 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1079464 6478204 Smal_0931 Stenotrophomonas maltophilia R551-3 twitching motility protein YP_002027319.1 1078427 D 391008 CDS YP_002027320.1 194364710 6478205 1079474..1080691 1 NC_011071.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: xac:XAC2923 twitching motility protein; twitching motility protein 1080691 6478205 Smal_0932 Stenotrophomonas maltophilia R551-3 twitching motility protein YP_002027320.1 1079474 D 391008 CDS YP_002027321.1 194364711 6478206 1080844..1081827 1 NC_011071.1 PFAM: aldo/keto reductase; KEGG: xcb:XC_1436 oxidoreductase; aldo/keto reductase 1081827 6478206 Smal_0933 Stenotrophomonas maltophilia R551-3 aldo/keto reductase YP_002027321.1 1080844 D 391008 CDS YP_002027322.1 194364712 6478207 complement(1081883..1082782) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_1437 transcriptional regulator LysR family; LysR family transcriptional regulator 1082782 6478207 Smal_0934 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027322.1 1081883 R 391008 CDS YP_002027323.1 194364713 6478290 1082876..1083085 1 NC_011071.1 KEGG: pfl:PFL_2771 hypothetical protein; hypothetical protein 1083085 6478290 Smal_0935 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027323.1 1082876 D 391008 CDS YP_002027324.1 194364714 6478291 1083182..1083631 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_1842 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1083631 6478291 Smal_0936 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027324.1 1083182 D 391008 CDS YP_002027325.1 194364715 6478292 1083725..1084432 1 NC_011071.1 PFAM: protein of unknown function DUF161; KEGG: xcv:XCV3066 hypothetical protein; hypothetical protein 1084432 6478292 Smal_0937 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027325.1 1083725 D 391008 CDS YP_002027326.1 194364716 6478293 complement(1084506..1085048) 1 NC_011071.1 PFAM: methyladenine glycosylase; KEGG: xcv:XCV3064 DNA-3-methyladenine glycosylase I; methyladenine glycosylase 1085048 6478293 Smal_0938 Stenotrophomonas maltophilia R551-3 methyladenine glycosylase YP_002027326.1 1084506 R 391008 CDS YP_002027327.1 194364717 6478294 complement(1085045..1086832) 1 NC_011071.1 KEGG: xcb:XC_1364 hypothetical protein; hypothetical protein 1086832 6478294 Smal_0939 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027327.1 1085045 R 391008 CDS YP_002027328.1 194364718 6478295 1086924..1087490 1 NC_011071.1 PFAM: protein of unknown function DUF179; KEGG: xcb:XC_1365 hypothetical protein; hypothetical protein 1087490 6478295 Smal_0940 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027328.1 1086924 D 391008 CDS YP_002027329.1 194364719 6478296 1087483..1087977 1 NC_011071.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1087977 6478296 Smal_0941 Stenotrophomonas maltophilia R551-3 Holliday junction resolvase-like protein YP_002027329.1 1087483 D 391008 CDS YP_002027330.1 194364720 6478297 1087993..1088943 1 NC_011071.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1088943 pyrB 6478297 pyrB Stenotrophomonas maltophilia R551-3 aspartate carbamoyltransferase catalytic subunit YP_002027330.1 1087993 D 391008 CDS YP_002027331.1 194364721 6478298 1089192..1089683 1 NC_011071.1 PFAM: protein of unknown function DUF1568; KEGG: psb:Psyr_4421 protein of unknown function DUF1568; hypothetical protein 1089683 6478298 Smal_0943 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027331.1 1089192 D 391008 CDS YP_002027332.1 194364722 6478299 complement(1089804..1090601) 1 NC_011071.1 KEGG: xac:XAC2981 hypothetical protein; hypothetical protein 1090601 6478299 Smal_0944 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027332.1 1089804 R 391008 CDS YP_002027333.1 194364723 6478300 complement(1090672..1090938) 1 NC_011071.1 hypothetical protein 1090938 6478300 Smal_0945 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027333.1 1090672 R 391008 CDS YP_002027334.1 194364724 6478301 complement(1091000..1092361) 1 NC_011071.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: xac:XAC2980 Mg++ transporter; magnesium transporter 1092361 6478301 Smal_0946 Stenotrophomonas maltophilia R551-3 magnesium transporter YP_002027334.1 1091000 R 391008 CDS YP_002027335.1 194364725 6478302 complement(1092542..1094311) 1 NC_011071.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: xcc:XCC2809 phosphotransferase system enzyme I; phosphoenolpyruvate-protein phosphotransferase 1094311 6478302 Smal_0947 Stenotrophomonas maltophilia R551-3 phosphoenolpyruvate-protein phosphotransferase YP_002027335.1 1092542 R 391008 CDS YP_002027336.1 194364726 6478303 complement(1094314..1094583) 1 NC_011071.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: xcb:XC_1305 phosphotransferase system HPr enzyme; phosphotransferase system, phosphocarrier protein HPr 1094583 6478303 Smal_0948 Stenotrophomonas maltophilia R551-3 phosphotransferase system, phosphocarrier protein HPr YP_002027336.1 1094314 R 391008 CDS YP_002027337.1 194364727 6478304 complement(1094576..1094968) 1 NC_011071.1 PFAM: PTS system fructose subfamily IIA component; KEGG: xom:XOO_1177 hypothetical protein; PTS system fructose subfamily transporter subunit IIA 1094968 6478304 Smal_0949 Stenotrophomonas maltophilia R551-3 PTS system fructose subfamily transporter subunit IIA YP_002027337.1 1094576 R 391008 CDS YP_002027338.1 194364728 6478305 complement(1095541..1096425) 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcb:XC_1307 hypothetical protein; hypothetical protein 1096425 6478305 Smal_0950 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027338.1 1095541 R 391008 CDS YP_002027339.1 194364729 6478306 complement(1096453..1097403) 1 NC_011071.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1097403 6478306 Smal_0951 Stenotrophomonas maltophilia R551-3 HPr kinase/phosphorylase YP_002027339.1 1096453 R 391008 CDS YP_002027340.1 194364730 6478307 complement(1097400..1097852) 1 NC_011071.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: xcv:XCV3120 putative nitrogen regulatory IIA protein (protein-N(pi)-phosphohistidine-sugar phosphotransferase); putative PTS IIA-like nitrogen-regulatory protein PtsN 1097852 6478307 Smal_0952 Stenotrophomonas maltophilia R551-3 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_002027340.1 1097400 R 391008 CDS YP_002027341.1 194364731 6478308 complement(1097874..1098191) 1 NC_011071.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: xac:XAC2973 sigma-54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1098191 6478308 Smal_0953 Stenotrophomonas maltophilia R551-3 sigma 54 modulation protein/30S ribosomal protein S30EA YP_002027341.1 1097874 R 391008 CDS YP_002027342.1 194364732 6478309 complement(1098250..1099674) 1 NC_011071.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1099674 6478309 Smal_0954 Stenotrophomonas maltophilia R551-3 RNA polymerase factor sigma-54 YP_002027342.1 1098250 R 391008 CDS YP_002027343.1 194364733 6478310 complement(1099715..1100434) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1312 ABC transporter ATP-binding protein; ABC transporter-like protein 1100434 6478310 Smal_0955 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027343.1 1099715 R 391008 CDS YP_002027344.1 194364734 6478311 complement(1100434..1100985) 1 NC_011071.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: xac:XAC2970 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA 1100985 6478311 Smal_0956 Stenotrophomonas maltophilia R551-3 lipopolysaccharide transport periplasmic protein LptA YP_002027344.1 1100434 R 391008 CDS YP_002027345.1 194364735 6478312 complement(1101090..1101665) 1 NC_011071.1 PFAM: protein of unknown function DUF1239; KEGG: xac:XAC2969 hypothetical protein; hypothetical protein 1101665 6478312 Smal_0957 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027345.1 1101090 R 391008 CDS YP_002027346.1 194364736 6478313 complement(1101662..1102210) 1 NC_011071.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: xcb:XC_1315 hypothetical protein; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1102210 6478313 Smal_0958 Stenotrophomonas maltophilia R551-3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002027346.1 1101662 R 391008 CDS YP_002027347.1 194364737 6478314 complement(1102277..1103278) 1 NC_011071.1 KEGG: xom:XOO_1188 polysialic acid capsule expression protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1103278 6478314 Smal_0959 Stenotrophomonas maltophilia R551-3 KpsF/GutQ family protein YP_002027347.1 1102277 R 391008 CDS YP_002027348.1 194364738 6478315 1103333..1103563 1 NC_011071.1 PFAM: BolA family protein; KEGG: xfn:XfasM23_0676 BolA family protein; BolA family protein 1103563 6478315 Smal_0960 Stenotrophomonas maltophilia R551-3 BolA family protein YP_002027348.1 1103333 D 391008 CDS YP_002027349.1 194364739 6478316 1103585..1104856 1 NC_011071.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1104856 6478316 Smal_0961 Stenotrophomonas maltophilia R551-3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002027349.1 1103585 D 391008 CDS YP_002027350.1 194364740 6478317 1104853..1105182 1 NC_011071.1 KEGG: xcv:XCV3109 hypothetical protein; hypothetical protein 1105182 6478317 Smal_0962 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027350.1 1104853 D 391008 CDS YP_002027351.1 194364741 6478318 complement(1105313..1105996) 1 NC_011071.1 KEGG: xac:XAC2963 hypothetical protein; hypothetical protein 1105996 6478318 Smal_0963 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027351.1 1105313 R 391008 CDS YP_002027352.1 194364742 6478319 complement(1105999..1106820) 1 NC_011071.1 KEGG: xcv:XCV3107 putative secreted protein; hypothetical protein 1106820 6478319 Smal_0964 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027352.1 1105999 R 391008 CDS YP_002027353.1 194364743 6478320 complement(1106888..1107547) 1 NC_011071.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1107547 purN 6478320 purN Stenotrophomonas maltophilia R551-3 phosphoribosylglycinamide formyltransferase YP_002027353.1 1106888 R 391008 CDS YP_002027354.1 194364744 6478321 complement(1107544..1108206) 1 NC_011071.1 KEGG: xom:XOO_1196 hypothetical protein; hypothetical protein 1108206 6478321 Smal_0966 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027354.1 1107544 R 391008 CDS YP_002027355.1 194364745 6478322 complement(1108249..1108671) 1 NC_011071.1 KEGG: pca:Pcar_2289 hypothetical protein; hypothetical protein 1108671 6478322 Smal_0967 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027355.1 1108249 R 391008 CDS YP_002027356.1 194364746 6478323 complement(1108668..1109156) 1 NC_011071.1 KEGG: xac:XAC2960 hypothetical protein; hypothetical protein 1109156 6478323 Smal_0968 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027356.1 1108668 R 391008 CDS YP_002027357.1 194364747 6478324 complement(1109179..1110237) 1 NC_011071.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1110237 6478324 Smal_0969 Stenotrophomonas maltophilia R551-3 phosphoribosylaminoimidazole synthetase YP_002027357.1 1109179 R 391008 CDS YP_002027358.1 194364748 6478325 1110349..1111476 1 NC_011071.1 KEGG: xcb:XC_1325 hypothetical protein; hypothetical protein 1111476 6478325 Smal_0970 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027358.1 1110349 D 391008 CDS YP_002027359.1 194364749 6478326 1111473..1112642 1 NC_011071.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_1326 permease; hypothetical protein 1112642 6478326 Smal_0971 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027359.1 1111473 D 391008 CDS YP_002027360.1 194364750 6478327 1112642..1113349 1 NC_011071.1 TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: xac:XAC2956 hypothetical protein; hypothetical protein 1113349 6478327 Smal_0972 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027360.1 1112642 D 391008 CDS YP_002027361.1 194364751 6478328 1113836..1114357 1 NC_011071.1 PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein 1114357 6478328 Smal_0973 Stenotrophomonas maltophilia R551-3 transposase IS3/IS911 family protein YP_002027361.1 1113836 D 391008 CDS YP_002027362.1 194364752 6478329 1114354..1115187 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit 1115187 6478329 Smal_0974 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002027362.1 1114354 D 391008 CDS YP_002027363.1 194364753 6478330 complement(1115299..1116009) 1 NC_011071.1 PFAM: Nucleotidyl transferase; KEGG: xcv:XCV3100 putative nucleotidyltransferase; nucleotidyl transferase 1116009 6478330 Smal_0975 Stenotrophomonas maltophilia R551-3 nucleotidyl transferase YP_002027363.1 1115299 R 391008 CDS YP_002027364.1 194364754 6478331 complement(1116006..1117031) 1 NC_011071.1 PFAM: aminoglycoside phosphotransferase; KEGG: xcv:XCV3099 putative phosphotransferase family protein; aminoglycoside phosphotransferase 1117031 6478331 Smal_0976 Stenotrophomonas maltophilia R551-3 aminoglycoside phosphotransferase YP_002027364.1 1116006 R 391008 CDS YP_002027365.1 194364755 6478332 complement(1117096..1117365) 1 NC_011071.1 PFAM: Transglycosylase-associated protein; KEGG: xcb:XC_1330 hypothetical protein; transglycosylase-associated protein 1117365 6478332 Smal_0977 Stenotrophomonas maltophilia R551-3 transglycosylase-associated protein YP_002027365.1 1117096 R 391008 CDS YP_002027366.1 194364756 6478333 complement(1117436..1118929) 1 NC_011071.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xcb:XC_1331 succinyl-diaminopimelate desuccinylase; peptidase M20 1118929 6478333 Smal_0978 Stenotrophomonas maltophilia R551-3 peptidase M20 YP_002027366.1 1117436 R 391008 CDS YP_002027367.1 194364757 6478334 1119129..1119455 1 NC_011071.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: xom:XOO_1207 DNA transport competence protein; competence protein ComEA 1119455 6478334 Smal_0979 Stenotrophomonas maltophilia R551-3 competence protein ComEA YP_002027367.1 1119129 D 391008 CDS YP_002027368.1 194364758 6478335 1119808..1120893 1 NC_011071.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pae:PA0732 hypothetical protein; hypothetical protein 1120893 6478335 Smal_0980 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027368.1 1119808 D 391008 CDS YP_002027369.1 194364759 6478336 1120911..1121636 1 NC_011071.1 KEGG: xcb:XC_2385 hypothetical protein; hypothetical protein 1121636 6478336 Smal_0981 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027369.1 1120911 D 391008 CDS YP_002027370.1 194364760 6478337 1121671..1122282 1 NC_011071.1 PFAM: protein of unknown function DUF886; KEGG: xcb:XC_1333 hypothetical protein; hypothetical protein 1122282 6478337 Smal_0982 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027370.1 1121671 D 391008 CDS YP_002027371.1 194364761 6478338 complement(1122358..1123962) 1 NC_011071.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: xcb:XC_1334 sulfite reductase; flavodoxin/nitric oxide synthase 1123962 6478338 Smal_0983 Stenotrophomonas maltophilia R551-3 flavodoxin/nitric oxide synthase YP_002027371.1 1122358 R 391008 CDS YP_002027372.1 194364762 6478339 complement(1123959..1124930) 1 NC_011071.1 PFAM: ApbE family lipoprotein; KEGG: xcb:XC_1335 thiamine biosynthesis lipoprotein ApbE precursor; ApbE family lipoprotein 1124930 6478339 Smal_0984 Stenotrophomonas maltophilia R551-3 ApbE family lipoprotein YP_002027372.1 1123959 R 391008 CDS YP_002027373.1 194364763 6478340 complement(1124983..1125786) 1 NC_011071.1 KEGG: xac:XAC2946 hypothetical protein; hypothetical protein 1125786 6478340 Smal_0985 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027373.1 1124983 R 391008 CDS YP_002027374.1 194364764 6478341 complement(1125863..1126381) 1 NC_011071.1 KEGG: xac:XAC2945 hypothetical protein; hypothetical protein 1126381 6478341 Smal_0986 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027374.1 1125863 R 391008 CDS YP_002027375.1 194364765 6478342 complement(1126408..1127022) 1 NC_011071.1 PFAM: PepSY-associated TM helix domain protein; KEGG: xcb:XC_1338 hypothetical protein; PepSY-associated TM helix domain-containing protein 1127022 6478342 Smal_0987 Stenotrophomonas maltophilia R551-3 PepSY-associated TM helix domain-containing protein YP_002027375.1 1126408 R 391008 CDS YP_002027376.1 194364766 6478343 complement(1127278..1129698) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hne:HNE_1653 TonB-dependent receptor; TonB-dependent receptor plug 1129698 6478343 Smal_0988 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002027376.1 1127278 R 391008 CDS YP_002027377.1 194364767 6478344 complement(1129845..1130255) 1 NC_011071.1 KEGG: cpv:cgd5_2180 large low complexity protein with proline/alanine-rich repeat; hypothetical protein 1130255 6478344 Smal_0989 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027377.1 1129845 R 391008 CDS YP_002027378.1 194364768 6478345 complement(1130420..1131097) 1 NC_011071.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: mms:mma_3620 PiuC iron-regulated protein; 2OG-Fe(II) oxygenase 1131097 6478345 Smal_0990 Stenotrophomonas maltophilia R551-3 2OG-Fe(II) oxygenase YP_002027378.1 1130420 R 391008 CDS YP_002027379.1 194364769 6478346 complement(1131108..1131827) 1 NC_011071.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: xac:XAC2943 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1131827 6478346 Smal_0991 Stenotrophomonas maltophilia R551-3 Sel1 domain-containing protein repeat-containing protein YP_002027379.1 1131108 R 391008 CDS YP_002027380.1 194364770 6478347 complement(1131896..1134184) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0864 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 1134184 6478347 Smal_0992 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027380.1 1131896 R 391008 CDS YP_002027381.1 194364771 6478348 complement(1134336..1134740) 1 NC_011071.1 KEGG: cel:F46H5.6 GRounDhog (hedgehog-like family); hypothetical protein 1134740 6478348 Smal_0993 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027381.1 1134336 R 391008 CDS YP_002027382.1 194364772 6478349 complement(1134944..1135276) 1 NC_011071.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: xac:XAC2940 benzene 1,2-dioxygenase ferredoxin protein; Rieske (2Fe-2S) domain-containing protein 1135276 6478349 Smal_0994 Stenotrophomonas maltophilia R551-3 Rieske (2Fe-2S) domain-containing protein YP_002027382.1 1134944 R 391008 CDS YP_002027383.1 194364773 6478350 complement(1135273..1135812) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1343 acetyltransferase; N-acetyltransferase GCN5 1135812 6478350 Smal_0995 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027383.1 1135273 R 391008 CDS YP_002027384.1 194364774 6478351 1136021..1136671 1 NC_011071.1 PFAM: protein of unknown function DUF1568; KEGG: rru:Rru_B0033 hypothetical protein; hypothetical protein 1136671 6478351 Smal_0996 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027384.1 1136021 D 391008 CDS YP_002027385.1 194364775 6478352 complement(1136788..1138044) 1 NC_011071.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: xac:XAC2938 cysteine desulfurase; cysteine desulfurase 1138044 6478352 Smal_0997 Stenotrophomonas maltophilia R551-3 cysteine desulfurase YP_002027385.1 1136788 R 391008 CDS YP_002027386.1 194364776 6478353 complement(1138041..1139303) 1 NC_011071.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: xcb:XC_1345 ABC transporter permease; FeS assembly protein SufD 1139303 6478353 Smal_0998 Stenotrophomonas maltophilia R551-3 FeS assembly protein SufD YP_002027386.1 1138041 R 391008 CDS YP_002027387.1 194364777 6478354 complement(1139303..1140073) 1 NC_011071.1 KEGG: xcb:XC_1346 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 1140073 6478354 Smal_0999 Stenotrophomonas maltophilia R551-3 FeS assembly ATPase SufC YP_002027387.1 1139303 R 391008 CDS YP_002027388.1 194364778 6478355 complement(1140070..1140471) 1 NC_011071.1 hypothetical protein 1140471 6478355 Smal_1000 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027388.1 1140070 R 391008 CDS YP_002027389.1 194364779 6478356 complement(1140471..1141946) 1 NC_011071.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1141946 6478356 Smal_1001 Stenotrophomonas maltophilia R551-3 cysteine desulfurase activator complex subunit SufB YP_002027389.1 1140471 R 391008 CDS YP_002027390.1 194364780 6478357 complement(1141964..1142419) 1 NC_011071.1 TIGRFAM: transcriptional regulator, Rrf2 family; FeS assembly SUF system regulator; PFAM: regulatory protein MarR; protein of unknown function UPF0074; transcriptional regulator TrmB; KEGG: xcv:XCV3078 putative transcriptional regulator, Rrf2 family; transcriptional regulator TrmB 1142419 6478357 Smal_1002 Stenotrophomonas maltophilia R551-3 transcriptional regulator TrmB YP_002027390.1 1141964 R 391008 CDS YP_002027391.1 194364781 6478358 1142631..1143098 1 NC_011071.1 PFAM: nuclear protein SET; KEGG: xoo:XOO1407 hypothetical protein; nuclear protein SET 1143098 6478358 Smal_1003 Stenotrophomonas maltophilia R551-3 nuclear protein SET YP_002027391.1 1142631 D 391008 CDS YP_002027392.1 194364782 6478359 complement(1143171..1143767) 1 NC_011071.1 KEGG: xcb:XC_1351 hypothetical protein; hypothetical protein 1143767 6478359 Smal_1004 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027392.1 1143171 R 391008 CDS YP_002027393.1 194364783 6478360 complement(1143850..1144380) 1 NC_011071.1 KEGG: xac:XAC2930 hypothetical protein; hypothetical protein 1144380 6478360 Smal_1005 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027393.1 1143850 R 391008 CDS YP_002027394.1 194364784 6478361 complement(1144437..1144745) 1 NC_011071.1 KEGG: xac:XAC2929 hypothetical protein; hypothetical protein 1144745 6478361 Smal_1006 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027394.1 1144437 R 391008 CDS YP_002027395.1 194364785 6478362 complement(1144999..1145397) 1 NC_011071.1 PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein; histone family protein DNA-binding protein 1145397 6478362 Smal_1007 Stenotrophomonas maltophilia R551-3 histone family protein DNA-binding protein YP_002027395.1 1144999 R 391008 CDS YP_002027396.1 194364786 6478363 1145769..1146200 1 NC_011071.1 PFAM: OsmC family protein; KEGG: xom:XOO_1312 osmotically inducible protein; OsmC family protein 1146200 6478363 Smal_1008 Stenotrophomonas maltophilia R551-3 OsmC family protein YP_002027396.1 1145769 D 391008 CDS YP_002027397.1 194364787 6478364 complement(1146281..1147159) 1 NC_011071.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: xcv:XCV3058 phenazine biosynthesis PhzF family protein; phenazine biosynthesis protein PhzF family 1147159 6478364 Smal_1009 Stenotrophomonas maltophilia R551-3 phenazine biosynthesis protein PhzF family YP_002027397.1 1146281 R 391008 CDS YP_002027398.1 194364788 6478365 complement(1147255..1148127) 1 NC_011071.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: xcb:XC_1371 hypothetical protein; phenazine biosynthesis protein PhzF family 1148127 6478365 Smal_1010 Stenotrophomonas maltophilia R551-3 phenazine biosynthesis protein PhzF family YP_002027398.1 1147255 R 391008 CDS YP_002027399.1 194364789 6478366 1148203..1150797 1 NC_011071.1 catalyzes the 4-phospho-L-aspartate from L-aspartate and the formation of lysine from meso-2,6-diaminoheptanedioate; bifunctional aspartate kinase/diaminopimelate decarboxylase protein 1150797 6478366 Smal_1011 Stenotrophomonas maltophilia R551-3 bifunctional aspartate kinase/diaminopimelate decarboxylase protein YP_002027399.1 1148203 D 391008 CDS YP_002027400.1 194364790 6478367 1150877..1152229 1 NC_011071.1 KEGG: xom:XOO_1319 hypothetical protein; hypothetical protein 1152229 6478367 Smal_1012 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027400.1 1150877 D 391008 CDS YP_002027401.1 194364791 6478368 1152210..1153619 1 NC_011071.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1153619 murD 6478368 murD Stenotrophomonas maltophilia R551-3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002027401.1 1152210 D 391008 CDS YP_002027402.1 194364792 6478369 complement(1153743..1154339) 1 NC_011071.1 KEGG: bur:Bcep18194_C6971 hypothetical protein; hypothetical protein 1154339 6478369 Smal_1014 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027402.1 1153743 R 391008 CDS YP_002027403.1 194364793 6478370 1154470..1155255 1 NC_011071.1 PFAM: dienelactone hydrolase; KEGG: xcv:XCV3051 putative carboxymethylenebutenolidase; dienelactone hydrolase 1155255 6478370 Smal_1015 Stenotrophomonas maltophilia R551-3 dienelactone hydrolase YP_002027403.1 1154470 D 391008 CDS YP_002027404.1 194364794 6478371 complement(1155388..1156386) 1 NC_011071.1 PFAM: Polyprenyl synthetase; KEGG: xcb:XC_1377 octaprenyl-diphosphate synthase; polyprenyl synthetase 1156386 6478371 Smal_1016 Stenotrophomonas maltophilia R551-3 polyprenyl synthetase YP_002027404.1 1155388 R 391008 CDS YP_002027405.1 194364795 6478444 1156601..1158214 1 NC_011071.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_1642 alpha-glucosidase; alpha amylase catalytic protein 1158214 6478444 Smal_1017 Stenotrophomonas maltophilia R551-3 alpha amylase catalytic protein YP_002027405.1 1156601 D 391008 CDS YP_002027406.1 194364796 6478445 complement(1158447..1161203) 1 NC_011071.1 TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1644 TonB-dependent receptor; outer membrane insertion C-terminal signal 1161203 6478445 Smal_1018 Stenotrophomonas maltophilia R551-3 outer membrane insertion C-terminal signal YP_002027406.1 1158447 R 391008 CDS YP_002027407.1 194364797 6478446 complement(1161455..1163506) 1 NC_011071.1 KEGG: xcb:XC_1645 alpha-glucosidase; alpha-glucosidase 1163506 6478446 Smal_1019 Stenotrophomonas maltophilia R551-3 alpha-glucosidase YP_002027407.1 1161455 R 391008 CDS YP_002027408.1 194364798 6478447 1163744..1165936 1 NC_011071.1 KEGG: xac:XAC2598 hypothetical protein; hypothetical protein 1165936 6478447 Smal_1020 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027408.1 1163744 D 391008 CDS YP_002027409.1 194364799 6478448 1165933..1167420 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2798 glycoside-pentoside-hexuronide:cation symporter family protein; major facilitator superfamily protein 1167420 6478448 Smal_1021 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027409.1 1165933 D 391008 CDS YP_002027410.1 194364800 6478449 1167420..1169135 1 NC_011071.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_1648 cyclomaltodextrin glucanotransferase (CGTase); alpha amylase catalytic protein 1169135 6478449 Smal_1022 Stenotrophomonas maltophilia R551-3 alpha amylase catalytic protein YP_002027410.1 1167420 D 391008 CDS YP_002027411.1 194364801 6478450 1169258..1169644 1 NC_011071.1 KEGG: cms:CMS_2225 hypothetical protein; hypothetical protein 1169644 6478450 Smal_1023 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027411.1 1169258 D 391008 CDS YP_002027412.1 194364802 6478451 1169758..1170216 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shl:Shal_0014 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1170216 6478451 Smal_1024 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027412.1 1169758 D 391008 CDS YP_002027413.1 194364803 6478452 complement(1170267..1170641) 1 NC_011071.1 hypothetical protein 1170641 6478452 Smal_1025 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027413.1 1170267 R 391008 CDS YP_002027414.1 194364804 6478453 complement(1170652..1171551) 1 NC_011071.1 hypothetical protein 1171551 6478453 Smal_1026 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027414.1 1170652 R 391008 CDS YP_002027415.1 194364805 6478454 1171800..1172087 1 NC_011071.1 hypothetical protein 1172087 6478454 Smal_1027 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027415.1 1171800 D 391008 CDS YP_002027416.1 194364806 6478455 complement(1172164..1175748) 1 NC_011071.1 KEGG: xac:XAC1388 hypothetical protein; hypothetical protein 1175748 6478455 Smal_1028 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027416.1 1172164 R 391008 CDS YP_002027417.1 194364807 6478456 complement(1175761..1176663) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1389 ABC transporter ATP-binding protein; ABC transporter-like protein 1176663 6478456 Smal_1029 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027417.1 1175761 R 391008 CDS YP_002027418.1 194364808 6478457 1176937..1178433 1 NC_011071.1 KEGG: xcb:XC_2577 hypothetical protein; PFAM: KaiA binding; SMART: AAA ATPase; Non-specific serine/threonine protein kinase 1178433 6478457 Smal_1030 Stenotrophomonas maltophilia R551-3 Non-specific serine/threonine protein kinase YP_002027418.1 1176937 D 391008 CDS YP_002027419.1 194364809 6478458 1178423..1180492 1 NC_011071.1 KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1180492 6478458 Smal_1031 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor hybrid histidine kinase YP_002027419.1 1178423 D 391008 CDS YP_002027420.1 194364810 6478459 complement(1180589..1181719) 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_1649 maltose transport gene repressor; LacI family transcriptional regulator 1181719 6478459 Smal_1032 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002027420.1 1180589 R 391008 CDS YP_002027421.1 194364811 6478460 1181914..1182489 1 NC_011071.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1182489 6478460 Smal_1033 Stenotrophomonas maltophilia R551-3 single-stranded DNA-binding protein YP_002027421.1 1181914 D 391008 CDS YP_002027422.1 194364812 6478461 1182895..1186275 1 NC_011071.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: abo:ABO_1832 type I restriction-modification system, R subunit; type III restriction protein res subunit 1186275 6478461 Smal_1034 Stenotrophomonas maltophilia R551-3 type III restriction protein res subunit YP_002027422.1 1182895 D 391008 CDS YP_002027423.1 194364813 6478462 1186284..1188122 1 NC_011071.1 PFAM: protein of unknown function DUF195; KEGG: pha:PSHAb0004 DNA recombination protein RmuC; hypothetical protein 1188122 6478462 Smal_1035 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027423.1 1186284 D 391008 CDS YP_002027424.1 194364814 6478463 1188134..1189717 1 NC_011071.1 PFAM: N-6 DNA methylase; KEGG: abo:ABO_1830 type I restriction-modification system, M subunit; N-6 DNA methylase 1189717 6478463 Smal_1036 Stenotrophomonas maltophilia R551-3 N-6 DNA methylase YP_002027424.1 1188134 D 391008 CDS YP_002027425.1 194364815 6478464 1189714..1190808 1 NC_011071.1 PFAM: restriction modification system DNA specificity domain; KEGG: rba:RB11619 type I restriction modification enzyme, S subunit; restriction modification system DNA specificity domain 1190808 6478464 Smal_1037 Stenotrophomonas maltophilia R551-3 restriction modification system DNA specificity domain YP_002027425.1 1189714 D 391008 CDS YP_002027426.1 194364816 6478465 1191309..1191719 1 NC_011071.1 hypothetical protein 1191719 6478465 Smal_1038 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027426.1 1191309 D 391008 CDS YP_002027427.1 194364817 6478466 complement(1191783..1192511) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B0662 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1192511 6478466 Smal_1039 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002027427.1 1191783 R 391008 CDS YP_002027428.1 194364818 6478467 1192605..1193504 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bid:Bind_1829 transcriptional regulator, AraC family; AraC family transcriptional regulator 1193504 6478467 Smal_1040 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027428.1 1192605 D 391008 CDS YP_002027429.1 194364819 6478468 1193653..1194549 1 NC_011071.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pat:Patl_2687 twin-arginine translocation pathway signal; Xylose isomerase domain-containing protein 1194549 6478468 Smal_1041 Stenotrophomonas maltophilia R551-3 Xylose isomerase domain-containing protein YP_002027429.1 1193653 D 391008 CDS YP_002027430.1 194364820 6478469 1194577..1196262 1 NC_011071.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_980 hypothetical protein; glucose-methanol-choline oxidoreductase 1196262 6478469 Smal_1042 Stenotrophomonas maltophilia R551-3 glucose-methanol-choline oxidoreductase YP_002027430.1 1194577 D 391008 CDS YP_002027431.1 194364821 6478470 1196262..1196843 1 NC_011071.1 KEGG: pat:Patl_2685 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 1196843 6478470 Smal_1043 Stenotrophomonas maltophilia R551-3 twin-arginine translocation pathway signal YP_002027431.1 1196262 D 391008 CDS YP_002027432.1 194364822 6478471 1196858..1197601 1 NC_011071.1 PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_2684 protein of unknown function DUF1080; hypothetical protein 1197601 6478471 Smal_1044 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027432.1 1196858 D 391008 CDS YP_002027433.1 194364823 6478472 complement(1197632..1197928) 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: swi:Swit_1900 quinoprotein glucose dehydrogenase; cytochrome c class I 1197928 6478472 Smal_1045 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002027433.1 1197632 R 391008 CDS YP_002027434.1 194364824 6478473 complement(1197947..1198810) 1 NC_011071.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_982 hypothetical protein; Xylose isomerase domain-containing protein 1198810 6478473 Smal_1046 Stenotrophomonas maltophilia R551-3 Xylose isomerase domain-containing protein YP_002027434.1 1197947 R 391008 CDS YP_002027435.1 194364825 6478474 complement(1198831..1199955) 1 NC_011071.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_1886 oxidoreductase family, NAD-binding Rossmann fold domain protein; oxidoreductase domain-containing protein 1199955 6478474 Smal_1047 Stenotrophomonas maltophilia R551-3 oxidoreductase domain-containing protein YP_002027435.1 1198831 R 391008 CDS YP_002027436.1 194364826 6478475 complement(1199968..1201185) 1 NC_011071.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: csa:Csal_0765 nucleoside:H+ symporter; nucleoside:H symporter 1201185 6478475 Smal_1048 Stenotrophomonas maltophilia R551-3 nucleoside:H symporter YP_002027436.1 1199968 R 391008 CDS YP_002027437.1 194364827 6478476 complement(1201213..1202265) 1 NC_011071.1 PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: cak:Caul_4609 xylose isomerase domain protein TIM barrel; Xylose isomerase domain-containing protein 1202265 6478476 Smal_1049 Stenotrophomonas maltophilia R551-3 Xylose isomerase domain-containing protein YP_002027437.1 1201213 R 391008 CDS YP_002027438.1 194364828 6478477 1202361..1203368 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC_1627 transcriptional regulator, LacI family; LacI family transcriptional regulator 1203368 6478477 Smal_1050 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002027438.1 1202361 D 391008 CDS YP_002027439.1 194364829 6478478 1203522..1204574 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ent:Ent638_2010 diguanylate cyclase; diguanylate cyclase 1204574 6478478 Smal_1051 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027439.1 1203522 D 391008 CDS YP_002027440.1 194364830 6478479 complement(1204611..1205525) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: pfo:PflO1_2408 transcriptional regulator, MarR family; MarR family transcriptional regulator with acetyltransferase activity 1205525 6478479 Smal_1052 Stenotrophomonas maltophilia R551-3 MarR family transcriptional regulator with acetyltransferase activity YP_002027440.1 1204611 R 391008 CDS YP_002027441.1 194364831 6478480 complement(1205585..1206517) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL0361 putative LysR family transcriptional regulator; LysR family transcriptional regulator 1206517 6478480 Smal_1053 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027441.1 1205585 R 391008 CDS YP_002027442.1 194364832 6478481 1206626..1207474 1 NC_011071.1 KEGG: shw:Sputw3181_3788 isocitrate lyase family protein; isocitrate lyase family protein 1207474 6478481 Smal_1054 Stenotrophomonas maltophilia R551-3 isocitrate lyase family protein YP_002027442.1 1206626 D 391008 CDS YP_002027443.1 194364833 6478482 1207600..1208625 1 NC_011071.1 KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein 1208625 6478482 Smal_1055 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027443.1 1207600 D 391008 CDS YP_002027444.1 194364834 6478483 1208788..1210530 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_B1591 putative GGDEF family protein; diguanylate cyclase 1210530 6478483 Smal_1056 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027444.1 1208788 D 391008 CDS YP_002027445.1 194364835 6478484 1210602..1211039 1 NC_011071.1 hypothetical protein 1211039 6478484 Smal_1057 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027445.1 1210602 D 391008 CDS YP_002027446.1 194364836 6478485 1211054..1211554 1 NC_011071.1 KEGG: atc:AGR_C_4417 hypothetical protein; hypothetical protein 1211554 6478485 Smal_1058 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027446.1 1211054 D 391008 CDS YP_002027447.1 194364837 6478486 complement(1211558..1212532) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7340 transcriptional regulator, LysR family; LysR family transcriptional regulator 1212532 6478486 Smal_1059 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027447.1 1211558 R 391008 CDS YP_002027448.1 194364838 6478487 1212671..1213597 1 NC_011071.1 KEGG: reu:Reut_A1824 conserved hypothetical protein YcjY; hypothetical protein 1213597 6478487 Smal_1060 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027448.1 1212671 D 391008 CDS YP_002027449.1 194364839 6478488 complement(1213640..1215034) 1 NC_011071.1 KEGG: xcv:XCV2950 hypothetical protein; hypothetical protein 1215034 6478488 Smal_1061 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027449.1 1213640 R 391008 CDS YP_002027450.1 194364840 6478489 complement(1215059..1215370) 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: mex:Mext_0720 regulatory protein ArsR; ArsR family transcriptional regulator 1215370 6478489 Smal_1062 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002027450.1 1215059 R 391008 CDS YP_002027451.1 194364841 6478490 1215499..1216080 1 NC_011071.1 KEGG: mpt:Mpe_A2322 hypothetical protein; hypothetical protein 1216080 6478490 Smal_1063 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027451.1 1215499 D 391008 CDS YP_002027452.1 194364842 6478491 1216291..1216758 1 NC_011071.1 KEGG: eli:ELI_14445 hypothetical protein; hypothetical protein 1216758 6478491 Smal_1064 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027452.1 1216291 D 391008 CDS YP_002027453.1 194364843 6478492 1216758..1216982 1 NC_011071.1 SMART: helix-turn-helix domain protein; KEGG: nar:Saro_0028 transcriptional regulator, XRE family; XRE family transcriptional regulator 1216982 6478492 Smal_1065 Stenotrophomonas maltophilia R551-3 XRE family transcriptional regulator YP_002027453.1 1216758 D 391008 CDS YP_002027454.1 194364844 6478493 1217026..1218567 1 NC_011071.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: rru:Rru_A2870 integral membrane protein TerC; integral membrane protein TerC 1218567 6478493 Smal_1066 Stenotrophomonas maltophilia R551-3 integral membrane protein TerC YP_002027454.1 1217026 D 391008 CDS YP_002027455.1 194364845 6478494 1218764..1219825 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: psp:PSPPH_2766 Ser/Thr protein phosphatase family protein; metallophosphoesterase 1219825 6478494 Smal_1067 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002027455.1 1218764 D 391008 CDS YP_002027456.1 194364846 6478495 1219898..1220308 1 NC_011071.1 hypothetical protein 1220308 6478495 Smal_1068 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027456.1 1219898 D 391008 CDS YP_002027457.1 194364847 6478496 1220406..1221419 1 NC_011071.1 KEGG: aha:AHA_1467 hypothetical protein; hypothetical protein 1221419 6478496 Smal_1069 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027457.1 1220406 D 391008 CDS YP_002027458.1 194364848 6478497 1221497..1222756 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_0464 general substrate transporter; major facilitator superfamily protein 1222756 6478497 Smal_1070 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027458.1 1221497 D 391008 CDS YP_002027459.1 194364849 6478498 complement(1222761..1223708) 1 NC_011071.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sme:SMc03175 putative nucleoside hydrolase protein; inosine/uridine-preferring nucleoside hydrolase 1223708 6478498 Smal_1071 Stenotrophomonas maltophilia R551-3 inosine/uridine-preferring nucleoside hydrolase YP_002027459.1 1222761 R 391008 CDS YP_002027460.1 194364850 6478499 1223830..1224186 1 NC_011071.1 KEGG: mdo:100032204 hypothetical protein LOC100032204; hypothetical protein 1224186 6478499 Smal_1072 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027460.1 1223830 D 391008 CDS YP_002027461.1 194364851 6478500 complement(1224258..1224977) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: xcb:XC_0580 transcriptional regulator MdcY family; GntR family transcriptional regulator 1224977 6478500 Smal_1073 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002027461.1 1224258 R 391008 CDS YP_002027462.1 194364852 6478501 complement(1225084..1226451) 1 NC_011071.1 PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: xcb:XC_0579 dicarboxylate carrier protein; dicarboxylate carrier MatC domain-containing protein 1226451 6478501 Smal_1074 Stenotrophomonas maltophilia R551-3 dicarboxylate carrier MatC domain-containing protein YP_002027462.1 1225084 R 391008 CDS YP_002027463.1 194364853 6478502 complement(1226556..1227476) 1 NC_011071.1 TIGRFAM: malonate decarboxylase, epsilon subunit; KEGG: xcb:XC_0578 acyl-carrier-protein S-malonyltransferase; malonate decarboxylase subunit epsilon 1227476 6478502 Smal_1075 Stenotrophomonas maltophilia R551-3 malonate decarboxylase subunit epsilon YP_002027463.1 1226556 R 391008 CDS YP_002027464.1 194364854 6478503 complement(1227473..1228330) 1 NC_011071.1 KEGG: xcb:XC_0577 CitG protein; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase MdcB 1228330 6478503 Smal_1076 Stenotrophomonas maltophilia R551-3 triphosphoribosyl-dephospho-CoA synthase MdcB YP_002027464.1 1227473 R 391008 CDS YP_002027465.1 194364855 6478504 complement(1228327..1228968) 1 NC_011071.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 1228968 6478504 Smal_1077 Stenotrophomonas maltophilia R551-3 phosphoribosyl-dephospho-CoA transferase YP_002027465.1 1228327 R 391008 CDS YP_002027466.1 194364856 6478505 complement(1228961..1229671) 1 NC_011071.1 TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: xcb:XC_0575 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 1229671 6478505 Smal_1078 Stenotrophomonas maltophilia R551-3 malonate decarboxylase subunit gamma YP_002027466.1 1228961 R 391008 CDS YP_002027467.1 194364857 6478506 complement(1229668..1230576) 1 NC_011071.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 1230576 6478506 Smal_1079 Stenotrophomonas maltophilia R551-3 malonate decarboxylase subunit beta YP_002027467.1 1229668 R 391008 CDS YP_002027468.1 194364858 6478507 complement(1230573..1230893) 1 NC_011071.1 acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 1230893 6478507 Smal_1080 Stenotrophomonas maltophilia R551-3 malonate decarboxylase subunit delta YP_002027468.1 1230573 R 391008 CDS YP_002027469.1 194364859 6478508 complement(1230904..1232547) 1 NC_011071.1 TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: xcb:XC_0572 alpha subunit of malonate decarboxylase; malonate decarboxylase subunit alpha 1232547 6478508 Smal_1081 Stenotrophomonas maltophilia R551-3 malonate decarboxylase subunit alpha YP_002027469.1 1230904 R 391008 CDS YP_002027470.1 194364860 6478509 complement(1232738..1234930) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV0159 TonB-dependent outer membrane receptor; TonB-dependent siderophore receptor 1234930 6478509 Smal_1082 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027470.1 1232738 R 391008 CDS YP_002027471.1 194364861 6478510 complement(1235229..1236929) 1 NC_011071.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1236929 6478510 Smal_1083 Stenotrophomonas maltophilia R551-3 malate:quinone oxidoreductase YP_002027471.1 1235229 R 391008 CDS YP_002027472.1 194364862 6478511 complement(1237125..1237571) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppg:PputGB1_2958 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1237571 6478511 Smal_1084 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027472.1 1237125 R 391008 CDS YP_002027473.1 194364863 6478512 complement(1237755..1238660) 1 NC_011071.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1238660 6478512 Smal_1085 Stenotrophomonas maltophilia R551-3 chromosome replication initiation inhibitor protein YP_002027473.1 1237755 R 391008 CDS YP_002027474.1 194364864 6478513 1238798..1239433 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB0235 probable transporter; lysine exporter protein LysE/YggA 1239433 6478513 Smal_1086 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002027474.1 1238798 D 391008 CDS YP_002027475.1 194364865 6478514 1239601..1241553 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xac:XAC1200 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1241553 6478514 Smal_1087 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002027475.1 1239601 D 391008 CDS YP_002027476.1 194364866 6478515 complement(1241609..1243363) 1 NC_011071.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: sdn:Sden_0945 amino acid/peptide transporter; amino acid/peptide transporter 1243363 6478515 Smal_1088 Stenotrophomonas maltophilia R551-3 amino acid/peptide transporter YP_002027476.1 1241609 R 391008 CDS YP_002027477.1 194364867 6478516 complement(1243453..1244601) 1 NC_011071.1 PFAM: protein of unknown function DUF1624; KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein 1244601 6478516 Smal_1089 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027477.1 1243453 R 391008 CDS YP_002027478.1 194364868 6474941 1244804..1246768 1 NC_011071.1 TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: xcv:XCV1230 oligopeptide transporter family protein; OPT family oligopeptide transporter 1246768 6474941 Smal_1090 Stenotrophomonas maltophilia R551-3 OPT family oligopeptide transporter YP_002027478.1 1244804 D 391008 CDS YP_002027479.1 194364869 6474942 1247023..1249101 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: xac:XAC1204 alanyl dipeptidyl peptidase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1249101 6474942 Smal_1091 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002027479.1 1247023 D 391008 CDS YP_002027480.1 194364870 6474943 1249243..1250487 1 NC_011071.1 PFAM: protein of unknown function DUF819; KEGG: xcv:XCV3040 hypothetical protein; hypothetical protein 1250487 6474943 Smal_1092 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027480.1 1249243 D 391008 CDS YP_002027481.1 194364871 6474944 complement(1250575..1251063) 1 NC_011071.1 KEGG: xcb:XC_3124 hypothetical protein; hypothetical protein 1251063 6474944 Smal_1093 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027481.1 1250575 R 391008 CDS YP_002027482.1 194364872 6474945 complement(1251101..1251361) 1 NC_011071.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1251361 minE 6474945 minE Stenotrophomonas maltophilia R551-3 cell division topological specificity factor MinE YP_002027482.1 1251101 R 391008 CDS YP_002027483.1 194364873 6474946 complement(1251364..1252173) 1 NC_011071.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xom:XOO_3337 septum site-determining protein; septum site-determining protein MinD 1252173 6474946 Smal_1095 Stenotrophomonas maltophilia R551-3 septum site-determining protein MinD YP_002027483.1 1251364 R 391008 CDS YP_002027484.1 194364874 6474947 complement(1252209..1252997) 1 NC_011071.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1252997 minC 6474947 minC Stenotrophomonas maltophilia R551-3 septum formation inhibitor YP_002027484.1 1252209 R 391008 CDS YP_002027485.1 194364875 6474948 complement(1253000..1253596) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein; N-acetyltransferase GCN5 1253596 6474948 Smal_1097 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027485.1 1253000 R 391008 CDS YP_002027486.1 194364876 6474949 1253747..1254943 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcb:XC_3118 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 1254943 6474949 Smal_1098 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027486.1 1253747 D 391008 CDS YP_002027487.1 194364877 6474950 1254943..1255584 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: xom:XOO_3333 two-component system regulatory protein; two component LuxR family transcriptional regulator 1255584 6474950 Smal_1099 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002027487.1 1254943 D 391008 CDS YP_002027488.1 194364878 6474951 1255819..1256892 1 NC_011071.1 KEGG: xac:XAC1230 hypothetical protein; hypothetical protein 1256892 6474951 Smal_1100 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027488.1 1255819 D 391008 CDS YP_002027489.1 194364879 6474952 1256998..1257369 1 NC_011071.1 PFAM: protein of unknown function DUF423; KEGG: xcb:XC_3113 hypothetical protein; hypothetical protein 1257369 6474952 Smal_1101 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027489.1 1256998 D 391008 CDS YP_002027490.1 194364880 6474953 complement(1257764..1258573) 1 NC_011071.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: xoo:XOO3523 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 1258573 6474953 Smal_1102 Stenotrophomonas maltophilia R551-3 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_002027490.1 1257764 R 391008 CDS YP_002027491.1 194364881 6474954 complement(1258583..1259176) 1 NC_011071.1 KEGG: cyt:cce_3711 hypothetical protein; hypothetical protein 1259176 6474954 Smal_1103 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027491.1 1258583 R 391008 CDS YP_002027492.1 194364882 6474955 complement(1259180..1259359) 1 NC_011071.1 KEGG: xcb:XC_3110 hypothetical protein; hypothetical protein 1259359 6474955 Smal_1104 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027492.1 1259180 R 391008 CDS YP_002027493.1 194364883 6474956 complement(1259356..1259535) 1 NC_011071.1 KEGG: xcv:XCV1266 hypothetical protein; hypothetical protein 1259535 6474956 Smal_1105 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027493.1 1259356 R 391008 CDS YP_002027494.1 194364884 6474957 complement(1259581..1260462) 1 NC_011071.1 PFAM: band 7 protein; KEGG: xac:XAC1236 hypothetical protein; hypothetical protein 1260462 6474957 Smal_1106 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027494.1 1259581 R 391008 CDS YP_002027495.1 194364885 6474958 1260600..1261787 1 NC_011071.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1261787 purT 6474958 purT Stenotrophomonas maltophilia R551-3 phosphoribosylglycinamide formyltransferase 2 YP_002027495.1 1260600 D 391008 CDS YP_002027496.1 194364886 6474959 complement(1261898..1263103) 1 NC_011071.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_3102 hypothetical protein; endonuclease/exonuclease/phosphatase 1263103 6474959 Smal_1108 Stenotrophomonas maltophilia R551-3 endonuclease/exonuclease/phosphatase YP_002027496.1 1261898 R 391008 CDS YP_002027497.1 194364887 6474960 complement(1263142..1263897) 1 NC_011071.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1263897 6474960 Smal_1109 Stenotrophomonas maltophilia R551-3 arginyl-tRNA-protein transferase YP_002027497.1 1263142 R 391008 CDS YP_002027498.1 194364888 6474961 1264054..1264617 1 NC_011071.1 KEGG: xcb:XC_3100 hypothetical protein; hypothetical protein 1264617 6474961 Smal_1110 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027498.1 1264054 D 391008 CDS YP_002027499.1 194364889 6474962 complement(1264669..1265886) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcv:XCV1276 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1265886 6474962 Smal_1111 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002027499.1 1264669 R 391008 CDS YP_002027500.1 194364890 6474963 complement(1266094..1266603) 1 NC_011071.1 KEGG: xom:XOO_1500 pathogenicity-related protein; pathogenicity-like protein 1266603 6474963 Smal_1112 Stenotrophomonas maltophilia R551-3 pathogenicity-like protein YP_002027500.1 1266094 R 391008 CDS YP_002027501.1 194364891 6474964 complement(1266608..1267528) 1 NC_011071.1 KEGG: xac:XAC1243 acyl-CoA thiolesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 1267528 6474964 Smal_1113 Stenotrophomonas maltophilia R551-3 acyl-CoA thioesterase II YP_002027501.1 1266608 R 391008 CDS YP_002027502.1 194364892 6474965 complement(1267656..1268432) 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xoo:XOO1616 hypothetical protein; enoyl-CoA hydratase/isomerase 1268432 6474965 Smal_1114 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase/isomerase YP_002027502.1 1267656 R 391008 CDS YP_002027503.1 194364893 6474966 1268467..1268913 1 NC_011071.1 PFAM: protein of unknown function DUF461; KEGG: xcv:XCV1281 hypothetical protein; hypothetical protein 1268913 6474966 Smal_1115 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027503.1 1268467 D 391008 CDS YP_002027504.1 194364894 6474967 complement(1269022..1269747) 1 NC_011071.1 KEGG: dac:Daci_4474 hypothetical protein; hypothetical protein 1269747 6474967 Smal_1116 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027504.1 1269022 R 391008 CDS YP_002027505.1 194364895 6474968 complement(1269833..1270240) 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: xcb:XC_3095 hypothetical protein; thioesterase superfamily protein 1270240 6474968 Smal_1117 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002027505.1 1269833 R 391008 CDS YP_002027506.1 194364896 6474969 complement(1270240..1273230) 1 NC_011071.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1273230 uvrA 6474969 uvrA Stenotrophomonas maltophilia R551-3 excinuclease ABC subunit A YP_002027506.1 1270240 R 391008 CDS YP_002027507.1 194364897 6474970 1273581..1273898 1 NC_011071.1 PFAM: ribosomal protein L21; KEGG: xcb:XC_3093 50S ribosomal protein L21; 50S ribosomal protein L21 1273898 rplU 6474970 rplU Stenotrophomonas maltophilia R551-3 50S ribosomal protein L21 YP_002027507.1 1273581 D 391008 CDS YP_002027508.1 194364898 6474971 1273910..1274173 1 NC_011071.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1274173 rpmA 6474971 rpmA Stenotrophomonas maltophilia R551-3 50S ribosomal protein L27 YP_002027508.1 1273910 D 391008 CDS YP_002027509.1 194364899 6474972 1274390..1275442 1 NC_011071.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1275442 obgE 6474972 obgE Stenotrophomonas maltophilia R551-3 GTPase ObgE YP_002027509.1 1274390 D 391008 CDS YP_002027510.1 194364900 6474973 complement(1275665..1275934) 1 NC_011071.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1275934 rpsT 6474973 rpsT Stenotrophomonas maltophilia R551-3 30S ribosomal protein S20 YP_002027510.1 1275665 R 391008 CDS YP_002027511.1 194364901 6474974 1276052..1277656 1 NC_011071.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: xom:XOO_1510 virulence factor; integral membrane protein MviN 1277656 6474974 Smal_1123 Stenotrophomonas maltophilia R551-3 integral membrane protein MviN YP_002027511.1 1276052 D 391008 CDS YP_002027512.1 194364902 6474975 1277732..1278679 1 NC_011071.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1278679 6474975 Smal_1124 Stenotrophomonas maltophilia R551-3 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002027512.1 1277732 D 391008 CDS YP_002027513.1 194364903 6474976 1278676..1281507 1 NC_011071.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1281507 ileS 6474976 ileS Stenotrophomonas maltophilia R551-3 isoleucyl-tRNA synthetase YP_002027513.1 1278676 D 391008 CDS YP_002027514.1 194364904 6474977 1281507..1282031 1 NC_011071.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1282031 lspA 6474977 lspA Stenotrophomonas maltophilia R551-3 lipoprotein signal peptidase YP_002027514.1 1281507 D 391008 CDS YP_002027515.1 194364905 6474978 1282059..1283009 1 NC_011071.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1283009 ispH 6474978 ispH Stenotrophomonas maltophilia R551-3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002027515.1 1282059 D 391008 CDS YP_002027516.1 194364906 6474979 1283204..1285087 1 NC_011071.1 PFAM: peptidase M61 domain protein; KEGG: xcv:XCV1311 putative glycyl aminopeptidase precursor; peptidase M61 domain-containing protein 1285087 6474979 Smal_1128 Stenotrophomonas maltophilia R551-3 peptidase M61 domain-containing protein YP_002027516.1 1283204 D 391008 CDS YP_002027517.1 194364907 6474980 1285084..1285749 1 NC_011071.1 PFAM: YhhN family protein; KEGG: oan:Oant_1326 YhhN family protein; hypothetical protein 1285749 6474980 Smal_1129 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027517.1 1285084 D 391008 CDS YP_002027518.1 194364908 6474981 complement(1285834..1286541) 1 NC_011071.1 KEGG: fjo:Fjoh_3948 hypothetical protein; hypothetical protein 1286541 6474981 Smal_1130 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027518.1 1285834 R 391008 CDS YP_002027519.1 194364909 6474982 complement(1286538..1287494) 1 NC_011071.1 KEGG: fjo:Fjoh_3949 hypothetical protein; hypothetical protein 1287494 6474982 Smal_1131 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027519.1 1286538 R 391008 CDS YP_002027520.1 194364910 6474983 complement(1287544..1290336) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbl:Sbal_0680 TonB-dependent receptor; TonB-dependent receptor plug 1290336 6474983 Smal_1132 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002027520.1 1287544 R 391008 CDS YP_002027521.1 194364911 6474984 complement(1290349..1291317) 1 NC_011071.1 PFAM: FecR protein; KEGG: psp:PSPPH_2117 FecR protein superfamily; anti-FecI sigma factor FecR 1291317 6474984 Smal_1133 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002027521.1 1290349 R 391008 CDS YP_002027522.1 194364912 6474985 complement(1291314..1291841) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4331 sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 1291841 6474985 Smal_1134 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002027522.1 1291314 R 391008 CDS YP_002027523.1 194364913 6474986 1292078..1294960 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bpa:BPP0822 autotransporter; outer membrane autotransporter barrel domain-containing protein 1294960 6474986 Smal_1135 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002027523.1 1292078 D 391008 CDS YP_002027524.1 194364914 6474987 1295059..1296063 1 NC_011071.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: csa:Csal_3144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1296063 6474987 Smal_1136 Stenotrophomonas maltophilia R551-3 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_002027524.1 1295059 D 391008 CDS YP_002027525.1 194364915 6474989 1296385..1296819 1 NC_011071.1 KEGG: ypg:YpAngola_0066 hypothetical protein; hypothetical protein 1296819 6474989 Smal_1137 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027525.1 1296385 D 391008 CDS YP_002027526.1 194364916 6474990 complement(1296938..1297273) 1 NC_011071.1 hypothetical protein 1297273 6474990 Smal_1138 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027526.1 1296938 R 391008 CDS YP_002027527.1 194364917 6474991 complement(1297287..1297919) 1 NC_011071.1 KEGG: bid:Bind_2941 hypothetical protein; hypothetical protein 1297919 6474991 Smal_1139 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027527.1 1297287 R 391008 CDS YP_002027528.1 194364918 6474992 1298271..1299326 1 NC_011071.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: xac:XAC1258 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 1299326 6474992 Smal_1140 Stenotrophomonas maltophilia R551-3 ubiquinol oxidase subunit II YP_002027528.1 1298271 D 391008 CDS YP_002027529.1 194364919 6474993 1299329..1301326 1 NC_011071.1 KEGG: xac:XAC1259 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 1301326 6474993 Smal_1141 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit I YP_002027529.1 1299329 D 391008 CDS YP_002027530.1 194364920 6474994 1301323..1301961 1 NC_011071.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: xoo:XOO1631 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 1301961 6474994 Smal_1142 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit III YP_002027530.1 1301323 D 391008 CDS YP_002027531.1 194364921 6474995 1301961..1302302 1 NC_011071.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: xom:XOO_1518 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 1302302 6474995 Smal_1143 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit IV YP_002027531.1 1301961 D 391008 CDS YP_002027532.1 194364922 6474996 complement(1302420..1304480) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pap:PSPA7_3579 hypothetical protein; diguanylate cyclase/phosphodiesterase 1304480 6474996 Smal_1144 Stenotrophomonas maltophilia R551-3 diguanylate cyclase/phosphodiesterase YP_002027532.1 1302420 R 391008 CDS YP_002027533.1 194364923 6474997 1304630..1306006 1 NC_011071.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1306006 6474997 Smal_1145 Stenotrophomonas maltophilia R551-3 DNA repair protein RadA YP_002027533.1 1304630 D 391008 CDS YP_002027534.1 194364924 6474998 1306196..1308052 1 NC_011071.1 KEGG: xom:XOO_1267 Hsp90xo protein; Hsp90xo protein 1308052 6474998 Smal_1146 Stenotrophomonas maltophilia R551-3 Hsp90xo protein YP_002027534.1 1306196 D 391008 CDS YP_002027535.1 194364925 6474999 1308101..1310407 1 NC_011071.1 KEGG: xom:XOO_1268 hypothetical protein; hypothetical protein 1310407 6474999 Smal_1147 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027535.1 1308101 D 391008 CDS YP_002027536.1 194364926 6475000 1310511..1310975 1 NC_011071.1 KEGG: psp:PSPPH_2865 hypothetical protein; hypothetical protein 1310975 6475000 Smal_1148 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027536.1 1310511 D 391008 CDS YP_002027537.1 194364927 6475001 complement(1311066..1311860) 1 NC_011071.1 PFAM: cytochrome c assembly protein; KEGG: xcb:XC_3049 hypothetical protein; cytochrome c assembly protein 1311860 6475001 Smal_1149 Stenotrophomonas maltophilia R551-3 cytochrome c assembly protein YP_002027537.1 1311066 R 391008 CDS YP_002027538.1 194364928 6475002 1311983..1313359 1 NC_011071.1 KEGG: xcb:XC_3048 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1313359 6475002 Smal_1150 Stenotrophomonas maltophilia R551-3 signal recognition particle protein YP_002027538.1 1311983 D 391008 CDS YP_002027539.1 194364929 6475003 1313451..1314527 1 NC_011071.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: xcb:XC_3045 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 1314527 6475003 Smal_1151 Stenotrophomonas maltophilia R551-3 2-nitropropane dioxygenase YP_002027539.1 1313451 D 391008 CDS YP_002027540.1 194364930 6475004 1314524..1315336 1 NC_011071.1 KEGG: xfa:XF0075 hypothetical protein; hypothetical protein 1315336 6475004 Smal_1152 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027540.1 1314524 D 391008 CDS YP_002027541.1 194364931 6475005 1315438..1315698 1 NC_011071.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1315698 rpsP 6475005 rpsP Stenotrophomonas maltophilia R551-3 30S ribosomal protein S16 YP_002027541.1 1315438 D 391008 CDS YP_002027542.1 194364932 6475006 1315743..1316255 1 NC_011071.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1316255 rimM 6475006 rimM Stenotrophomonas maltophilia R551-3 16S rRNA-processing protein RimM YP_002027542.1 1315743 D 391008 CDS YP_002027543.1 194364933 6475007 1316264..1317022 1 NC_011071.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1317022 trmD 6475007 trmD Stenotrophomonas maltophilia R551-3 tRNA (guanine-N(1)-)-methyltransferase YP_002027543.1 1316264 D 391008 CDS YP_002027544.1 194364934 6475008 1317177..1317578 1 NC_011071.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1317578 rplS 6475008 rplS Stenotrophomonas maltophilia R551-3 50S ribosomal protein L19 YP_002027544.1 1317177 D 391008 CDS YP_002027545.1 194364935 6475009 1317661..1318041 1 NC_011071.1 KEGG: esa:ESA_02980 hypothetical protein; hypothetical protein 1318041 6475009 Smal_1157 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027545.1 1317661 D 391008 CDS YP_002027546.1 194364936 6475010 1318121..1318555 1 NC_011071.1 PFAM: Domain of unknown function DUF1801; KEGG: mlo:mll2250 hypothetical protein; hypothetical protein 1318555 6475010 Smal_1158 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027546.1 1318121 D 391008 CDS YP_002027547.1 194364937 6475011 1318594..1319001 1 NC_011071.1 PFAM: Domain of unknown function DUF1801; KEGG: pde:Pden_0329 hypothetical protein; hypothetical protein 1319001 6475011 Smal_1159 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027547.1 1318594 D 391008 CDS YP_002027548.1 194364938 6475012 complement(1319161..1320621) 1 NC_011071.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: xcb:XC_3039 hypothetical protein; MATE efflux family protein 1320621 6475012 Smal_1160 Stenotrophomonas maltophilia R551-3 MATE efflux family protein YP_002027548.1 1319161 R 391008 CDS YP_002027549.1 194364939 6475013 1320684..1320923 1 NC_011071.1 hypothetical protein 1320923 6475013 Smal_1161 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027549.1 1320684 D 391008 CDS YP_002027550.1 194364940 6475014 1320933..1321340 1 NC_011071.1 PFAM: RNA-binding S4 domain protein; KEGG: xcb:XC_3038 heat shock protein 15 homolog; RNA-binding S4 domain-containing protein 1321340 6475014 Smal_1162 Stenotrophomonas maltophilia R551-3 RNA-binding S4 domain-containing protein YP_002027550.1 1320933 D 391008 CDS YP_002027551.1 194364941 6475015 1321454..1322641 1 NC_011071.1 PFAM: glycoside hydrolase family 5; KEGG: pen:PSEEN1388 glycosidase, family 5; glycoside hydrolase family protein 1322641 6475015 Smal_1163 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family protein YP_002027551.1 1321454 D 391008 CDS YP_002027552.1 194364942 6475016 complement(1322714..1323316) 1 NC_011071.1 KEGG: bpt:Bpet2936 hypothetical protein; hypothetical protein 1323316 6475016 Smal_1164 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027552.1 1322714 R 391008 CDS YP_002027553.1 194364943 6475017 complement(1323425..1325068) 1 NC_011071.1 PFAM: Catalase domain protein; KEGG: swi:Swit_0269 catalase; catalase 1325068 6475017 Smal_1165 Stenotrophomonas maltophilia R551-3 catalase YP_002027553.1 1323425 R 391008 CDS YP_002027554.1 194364944 6475018 complement(1325263..1327854) 1 NC_011071.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1327854 6475018 Smal_1166 Stenotrophomonas maltophilia R551-3 DNA mismatch repair protein MutS YP_002027554.1 1325263 R 391008 CDS YP_002027555.1 194364945 6475019 1328060..1328518 1 NC_011071.1 KEGG: bpm:BURPS1710b_0566 hypothetical protein; hypothetical protein 1328518 6475019 Smal_1167 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027555.1 1328060 D 391008 CDS YP_002027556.1 194364946 6475020 complement(1328563..1328955) 1 NC_011071.1 KEGG: rha:RHA1_ro03362 possible barnase inhibitor; putative barnase inhibitor 1328955 6475020 Smal_1168 Stenotrophomonas maltophilia R551-3 putative barnase inhibitor YP_002027556.1 1328563 R 391008 CDS YP_002027557.1 194364947 6475021 1329236..1331458 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_2304 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1331458 6475021 Smal_1169 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002027557.1 1329236 D 391008 CDS YP_002027558.1 194364948 6475022 1331632..1331994 1 NC_011071.1 PFAM: 17 kDa surface antigen; KEGG: xcb:XC_0723 hypothetical protein; 17 kDa surface antigen 1331994 6475022 Smal_1170 Stenotrophomonas maltophilia R551-3 17 kDa surface antigen YP_002027558.1 1331632 D 391008 CDS YP_002027559.1 194364949 6475023 complement(1332114..1333241) 1 NC_011071.1 KEGG: aci:ACIAD2651 hypothetical protein; hypothetical protein 1333241 6475023 Smal_1171 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027559.1 1332114 R 391008 CDS YP_002027560.1 194364950 6475024 complement(1333238..1334425) 1 NC_011071.1 KEGG: dac:Daci_4570 ABC-2 type transporter; ABC-2 type transporter 1334425 6475024 Smal_1172 Stenotrophomonas maltophilia R551-3 ABC-2 type transporter YP_002027560.1 1333238 R 391008 CDS YP_002027561.1 194364951 6475025 complement(1334410..1335423) 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_4571 secretion protein HlyD family protein; secretion protein HlyD family protein 1335423 6475025 Smal_1173 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027561.1 1334410 R 391008 CDS YP_002027562.1 194364952 6475026 complement(1335416..1336789) 1 NC_011071.1 PFAM: outer membrane efflux protein; KEGG: ppr:PBPRB0513 hypothetical protein; outer membrane efflux protein 1336789 6475026 Smal_1174 Stenotrophomonas maltophilia R551-3 outer membrane efflux protein YP_002027562.1 1335416 R 391008 CDS YP_002027563.1 194364953 6475027 complement(1336895..1337788) 1 NC_011071.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1337788 6475027 Smal_1175 Stenotrophomonas maltophilia R551-3 chromosome replication initiation inhibitor protein YP_002027563.1 1336895 R 391008 CDS YP_002027564.1 194364954 6475028 1337896..1338516 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xac:XAC3133 membrane transport protein; lysine exporter protein LysE/YggA 1338516 6475028 Smal_1176 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002027564.1 1337896 D 391008 CDS YP_002027565.1 194364955 6475029 1338692..1339360 1 NC_011071.1 KEGG: spe:Spro_2143 hypothetical protein; hypothetical protein 1339360 6475029 Smal_1177 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027565.1 1338692 D 391008 CDS YP_002027566.1 194364956 6475030 complement(1339357..1340145) 1 NC_011071.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: xac:XAC3782 methionine aminopeptidase; methionine aminopeptidase 1340145 6475030 Smal_1178 Stenotrophomonas maltophilia R551-3 methionine aminopeptidase YP_002027566.1 1339357 R 391008 CDS YP_002027567.1 194364957 6475031 complement(1340150..1340362) 1 NC_011071.1 KEGG: xcv:XCV3895 hypothetical protein; hypothetical protein 1340362 6475031 Smal_1179 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027567.1 1340150 R 391008 CDS YP_002027568.1 194364958 6475032 complement(1340431..1340790) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nmu:Nmul_A2014 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 1340790 6475032 Smal_1180 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002027568.1 1340431 R 391008 CDS YP_002027569.1 194364959 6475033 complement(1340998..1341882) 1 NC_011071.1 KEGG: dac:Daci_0135 hypothetical protein; hypothetical protein 1341882 6475033 Smal_1181 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027569.1 1340998 R 391008 CDS YP_002027570.1 194364960 6475034 complement(1341886..1342950) 1 NC_011071.1 KEGG: aav:Aave_4332 hypothetical protein; hypothetical protein 1342950 6475034 Smal_1182 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027570.1 1341886 R 391008 CDS YP_002027571.1 194364961 6475035 complement(1342979..1344379) 1 NC_011071.1 PFAM: aminotransferase class-III; KEGG: dac:Daci_0137 aminotransferase class-III; class III aminotransferase 1344379 6475035 Smal_1183 Stenotrophomonas maltophilia R551-3 class III aminotransferase YP_002027571.1 1342979 R 391008 CDS YP_002027572.1 194364962 6475036 complement(1344442..1345158) 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 1345158 6475036 Smal_1184 Stenotrophomonas maltophilia R551-3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_002027572.1 1344442 R 391008 CDS YP_002027573.1 194364963 6475037 complement(1345333..1346535) 1 NC_011071.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dac:Daci_0133 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1346535 6475037 Smal_1185 Stenotrophomonas maltophilia R551-3 DegT/DnrJ/EryC1/StrS aminotransferase YP_002027573.1 1345333 R 391008 CDS YP_002027574.1 194364964 6475038 complement(1346546..1346929) 1 NC_011071.1 KEGG: aav:Aave_4329 hypothetical protein; hypothetical protein 1346929 6475038 Smal_1186 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027574.1 1346546 R 391008 CDS YP_002027575.1 194364965 6475039 complement(1346941..1347300) 1 NC_011071.1 KEGG: dac:Daci_0131 hypothetical protein; hypothetical protein 1347300 6475039 Smal_1187 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027575.1 1346941 R 391008 CDS YP_002027576.1 194364966 6475040 complement(1347302..1348138) 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: dac:Daci_0130 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1348138 6475040 Smal_1188 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002027576.1 1347302 R 391008 CDS YP_002027577.1 194364967 6475041 complement(1348219..1349598) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: mca:MCA1765 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1349598 6475041 Smal_1189 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027577.1 1348219 R 391008 CDS YP_002027578.1 194364968 6475042 complement(1349595..1350278) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0526 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1350278 6475042 Smal_1190 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027578.1 1349595 R 391008 CDS YP_002027579.1 194364969 6475043 complement(1350411..1351538) 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: slo:Shew_1182 metallophosphoesterase; metallophosphoesterase 1351538 6475043 Smal_1191 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002027579.1 1350411 R 391008 CDS YP_002027580.1 194364970 6475044 complement(1351612..1352061) 1 NC_011071.1 PFAM: helix-turn-helix HxlR type; KEGG: bbr:BB2332 putative transcriptional regulator; HxlR family transcriptional regulator 1352061 6475044 Smal_1192 Stenotrophomonas maltophilia R551-3 HxlR family transcriptional regulator YP_002027580.1 1351612 R 391008 CDS YP_002027581.1 194364971 6475045 1352139..1353323 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3735 major facilitator superfamily MFS_1; major facilitator superfamily protein 1353323 6475045 Smal_1193 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027581.1 1352139 D 391008 CDS YP_002027582.1 194364972 6475046 complement(1353348..1354763) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: psa:PST_0006 GGDEF domain protein; diguanylate cyclase 1354763 6475046 Smal_1194 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027582.1 1353348 R 391008 CDS YP_002027583.1 194364973 6475047 1355053..1357302 1 NC_011071.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 1357302 6475047 Smal_1195 Stenotrophomonas maltophilia R551-3 outer membrane receptor FepA YP_002027583.1 1355053 D 391008 CDS YP_002027584.1 194364974 6475048 1357522..1358502 1 NC_011071.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV1368 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 1358502 6475048 Smal_1196 Stenotrophomonas maltophilia R551-3 cation diffusion facilitator family transporter YP_002027584.1 1357522 D 391008 CDS YP_002027585.1 194364975 6475049 complement(1358627..1359310) 1 NC_011071.1 PFAM: Endonuclease V; KEGG: xcb:XC_1403 endonuclease V; Deoxyribonuclease V 1359310 6475049 Smal_1197 Stenotrophomonas maltophilia R551-3 Deoxyribonuclease V YP_002027585.1 1358627 R 391008 CDS YP_002027586.1 194364976 6475050 1359405..1360154 1 NC_011071.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1360154 gpmA 6475050 gpmA Stenotrophomonas maltophilia R551-3 phosphoglyceromutase YP_002027586.1 1359405 D 391008 CDS YP_002027587.1 194364977 6475051 1360315..1362408 1 NC_011071.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcv:XCV3027 metallopeptidase precursor; endothelin-converting enzyme 1 1362408 6475051 Smal_1199 Stenotrophomonas maltophilia R551-3 endothelin-converting enzyme 1 YP_002027587.1 1360315 D 391008 CDS YP_002027588.1 194364978 6475052 complement(1362501..1363112) 1 NC_011071.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mfa:Mfla_1725 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1363112 6475052 Smal_1200 Stenotrophomonas maltophilia R551-3 metal dependent phosphohydrolase YP_002027588.1 1362501 R 391008 CDS YP_002027589.1 194364979 6475053 complement(1363164..1366628) 1 NC_011071.1 KEGG: xom:XOO_1373 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 1366628 6475053 Smal_1201 Stenotrophomonas maltophilia R551-3 transcription-repair coupling factor YP_002027589.1 1363164 R 391008 CDS YP_002027590.1 194364980 6475054 complement(1366778..1367323) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1417 hypothetical protein; N-acetyltransferase GCN5 1367323 6475054 Smal_1202 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027590.1 1366778 R 391008 CDS YP_002027591.1 194364981 6475055 complement(1367419..1368276) 1 NC_011071.1 PFAM: protein of unknown function DUF519; KEGG: xcv:XCV3016 hypothetical protein; hypothetical protein 1368276 6475055 Smal_1203 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027591.1 1367419 R 391008 CDS YP_002027592.1 194364982 6475056 1368312..1369040 1 NC_011071.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 1369040 6475056 Smal_1204 Stenotrophomonas maltophilia R551-3 DNA-binding response regulator CreB YP_002027592.1 1368312 D 391008 CDS YP_002027593.1 194364983 6475057 1369044..1370504 1 NC_011071.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 1370504 6475057 Smal_1205 Stenotrophomonas maltophilia R551-3 sensory histidine kinase CreC YP_002027593.1 1369044 D 391008 CDS YP_002027594.1 194364984 6475058 1370586..1371905 1 NC_011071.1 PFAM: Inner membrane CreD family protein; KEGG: xcb:XC_1423 hypothetical protein; hypothetical protein 1371905 6475058 Smal_1206 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027594.1 1370586 D 391008 CDS YP_002027595.1 194364985 6475059 1371916..1372326 1 NC_011071.1 hypothetical protein 1372326 6475059 Smal_1207 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027595.1 1371916 D 391008 CDS YP_002027596.1 194364986 6475060 1372498..1374075 1 NC_011071.1 PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28; peptidase M28 1374075 6475060 Smal_1208 Stenotrophomonas maltophilia R551-3 peptidase M28 YP_002027596.1 1372498 D 391008 CDS YP_002027597.1 194364987 6475061 1374229..1375632 1 NC_011071.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1375632 gltX 6475061 gltX Stenotrophomonas maltophilia R551-3 glutamyl-tRNA synthetase YP_002027597.1 1374229 D 391008 CDS YP_002027598.1 194364988 6475062 1375667..1376158 1 NC_011071.1 PFAM: ferric-uptake regulator; KEGG: xcb:XC_1430 transcriptional regulator fur family; Fur family ferric uptake regulator 1376158 6475062 Smal_1210 Stenotrophomonas maltophilia R551-3 Fur family ferric uptake regulator YP_002027598.1 1375667 D 391008 CDS YP_002027599.1 194364989 6475063 complement(1376251..1377411) 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_4248 secretion protein HlyD family protein; secretion protein HlyD family protein 1377411 6475063 Smal_1211 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027599.1 1376251 R 391008 CDS YP_002027600.1 194364990 6475064 complement(1377422..1379095) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4249 major facilitator superfamily MFS_1; major facilitator superfamily protein 1379095 6475064 Smal_1212 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027600.1 1377422 R 391008 CDS YP_002027601.1 194364991 6475065 complement(1379095..1379661) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: dac:Daci_4250 transcriptional regulator, TetR family; regulatory protein TetR 1379661 6475065 Smal_1213 Stenotrophomonas maltophilia R551-3 regulatory protein TetR YP_002027601.1 1379095 R 391008 CDS YP_002027602.1 194364992 6475066 complement(1379891..1382095) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1459 outer membrane hemin receptor; TonB-dependent receptor 1382095 6475066 Smal_1214 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027602.1 1379891 R 391008 CDS YP_002027603.1 194364993 6475067 1382232..1382645 1 NC_011071.1 KEGG: xom:XOO_1421 hypothetical protein; hypothetical protein 1382645 6475067 Smal_1215 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027603.1 1382232 D 391008 CDS YP_002027604.1 194364994 6475068 1382756..1382935 1 NC_011071.1 KEGG: xom:XOO_1422 hypothetical protein; hypothetical protein 1382935 6475068 Smal_1216 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027604.1 1382756 D 391008 CDS YP_002027605.1 194364995 6475069 complement(1383089..1384342) 1 NC_011071.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: xac:XAC2824 phosphodiesterase-nucleotide pyrophosphatase; Nucleotide diphosphatase 1384342 6475069 Smal_1217 Stenotrophomonas maltophilia R551-3 Nucleotide diphosphatase YP_002027605.1 1383089 R 391008 CDS YP_002027606.1 194364996 6475070 complement(1384777..1385268) 1 NC_011071.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: xac:XAC2823 6-O-methylguanine-DNA methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1385268 6475070 Smal_1218 Stenotrophomonas maltophilia R551-3 methylated-DNA--protein-cysteine methyltransferase YP_002027606.1 1384777 R 391008 CDS YP_002027607.1 194364997 6475071 complement(1385265..1386743) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: xcb:XC_1465 DNA methylation and regulatory protein Ada; AraC family transcriptional regulator 1386743 6475071 Smal_1219 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027607.1 1385265 R 391008 CDS YP_002027608.1 194364998 6475072 1387182..1388345 1 NC_011071.1 KEGG: xcv:XCV2982 putative secreted protein; hypothetical protein 1388345 6475072 Smal_1220 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027608.1 1387182 D 391008 CDS YP_002027609.1 194364999 6475073 1388404..1388949 1 NC_011071.1 KEGG: xcv:XCV2980 putative secreted protein; hypothetical protein 1388949 6475073 Smal_1221 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027609.1 1388404 D 391008 CDS YP_002027610.1 194365000 6475074 1388961..1389350 1 NC_011071.1 KEGG: xcv:XCV2979 hypothetical protein; hypothetical protein 1389350 6475074 Smal_1222 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027610.1 1388961 D 391008 CDS YP_002027611.1 194365001 6475075 1389431..1390609 1 NC_011071.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: xcc:XCC2647 hypothetical protein; hypothetical protein 1390609 6475075 Smal_1223 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027611.1 1389431 D 391008 CDS YP_002027612.1 194365002 6475076 complement(1390635..1390856) 1 NC_011071.1 KEGG: xcv:XCV2977 hypothetical protein; hypothetical protein 1390856 6475076 Smal_1224 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027612.1 1390635 R 391008 CDS YP_002027613.1 194365003 6475077 1391122..1393062 1 NC_011071.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV2974 ATP-dependent RNA helicase; DEAD/DEAH box helicase 1393062 6475077 Smal_1225 Stenotrophomonas maltophilia R551-3 DEAD/DEAH box helicase YP_002027613.1 1391122 D 391008 CDS YP_002027614.1 194365004 6475078 1393290..1395713 1 NC_011071.1 KEGG: xcv:XCV2973 putative signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1395713 6475078 Smal_1226 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002027614.1 1393290 D 391008 CDS YP_002027615.1 194365005 6475079 1395823..1397487 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mms:mma_1623 diguanylate cyclase; diguanylate cyclase 1397487 6475079 Smal_1227 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027615.1 1395823 D 391008 CDS YP_002027616.1 194365006 6475080 1397522..1398244 1 NC_011071.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xcb:XC_1477 pseudouridylate synthase; pseudouridine synthase 1398244 6475080 Smal_1228 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002027616.1 1397522 D 391008 CDS YP_002027617.1 194365007 6475081 1398389..1399459 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: xcv:XCV2971 putative sensor protein; diguanylate cyclase 1399459 6475081 Smal_1229 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027617.1 1398389 D 391008 CDS YP_002027618.1 194365008 6475082 1399580..1400740 1 NC_011071.1 KEGG: pmy:Pmen_1016 SMC domain protein; SMC domain-containing protein 1400740 6475082 Smal_1230 Stenotrophomonas maltophilia R551-3 SMC domain-containing protein YP_002027618.1 1399580 D 391008 CDS YP_002027619.1 194365009 6475083 complement(1400771..1401718) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC2809 hypothetical protein; hypothetical protein 1401718 6475083 Smal_1231 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027619.1 1400771 R 391008 CDS YP_002027620.1 194365010 6475084 complement(1401764..1402576) 1 NC_011071.1 PFAM: protein of unknown function DUF72; KEGG: xac:XAC2808 hypothetical protein; hypothetical protein 1402576 6475084 Smal_1232 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027620.1 1401764 R 391008 CDS YP_002027621.1 194365011 6475085 complement(1402576..1403019) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: har:HEAR0063 putative glyoxalase/bleomycin resistance protein/dihydroxybiphenyl dioxygenase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 1403019 6475085 Smal_1233 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002027621.1 1402576 R 391008 CDS YP_002027622.1 194365012 6475086 1403130..1404689 1 NC_011071.1 PFAM: beta-lactamase; KEGG: xac:XAC2806 beta-lactamase; beta-lactamase 1404689 6475086 Smal_1234 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002027622.1 1403130 D 391008 CDS YP_002027623.1 194365013 6475087 1404861..1406693 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1484 ABC transporter ATP-binding protein; ABC transporter-like protein 1406693 6475087 Smal_1235 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027623.1 1404861 D 391008 CDS YP_002027624.1 194365014 6475088 1406813..1408036 1 NC_011071.1 PFAM: histidine acid phosphatase; KEGG: spt:SPA1733 glucose-1-phosphatase/inositol phosphatase; glucose-1-phosphatase/inositol phosphatase 1408036 6475088 Smal_1236 Stenotrophomonas maltophilia R551-3 glucose-1-phosphatase/inositol phosphatase YP_002027624.1 1406813 D 391008 CDS YP_002027625.1 194365015 6475089 complement(1408178..1409986) 1 NC_011071.1 PFAM: protein of unknown function DUF885; KEGG: xcb:XC_1485 hypothetical protein; hypothetical protein 1409986 6475089 Smal_1237 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027625.1 1408178 R 391008 CDS YP_002027626.1 194365016 6475090 1410100..1410456 1 NC_011071.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: xcv:XCV2953 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1410456 6475090 Smal_1238 Stenotrophomonas maltophilia R551-3 glutathione-dependent formaldehyde-activating protein YP_002027626.1 1410100 D 391008 CDS YP_002027627.1 194365017 6475091 1410453..1411256 1 NC_011071.1 KEGG: xcv:XCV2952 putative secreted protein; hypothetical protein 1411256 6475091 Smal_1239 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027627.1 1410453 D 391008 CDS YP_002027628.1 194365018 6475092 complement(1411369..1411662) 1 NC_011071.1 KEGG: xcb:XC_1487 hypothetical protein; hypothetical protein 1411662 6475092 Smal_1240 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027628.1 1411369 R 391008 CDS YP_002027629.1 194365019 6475093 complement(1411731..1412675) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_1490 transcriptional regulator; LysR family transcriptional regulator 1412675 6475093 Smal_1241 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027629.1 1411731 R 391008 CDS YP_002027630.1 194365020 6475094 1412792..1413664 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_1491 hypothetical protein; hypothetical protein 1413664 6475094 Smal_1242 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027630.1 1412792 D 391008 CDS YP_002027631.1 194365021 6475095 complement(1414242..1415144) 1 NC_011071.1 KEGG: xcv:XCV2946 putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type; putative secreted cyclophilin type peptidyl prolyl cis-trans isomerase 1415144 6475095 Smal_1243 Stenotrophomonas maltophilia R551-3 putative secreted cyclophilin type peptidyl prolyl cis-trans isomerase YP_002027631.1 1414242 R 391008 CDS YP_002027632.1 194365022 6475096 1415281..1415646 1 NC_011071.1 PFAM: transcriptional regulator PadR family protein; KEGG: xac:XAC1398 hypothetical protein; PadR-like family transcriptional regulator 1415646 6475096 Smal_1244 Stenotrophomonas maltophilia R551-3 PadR-like family transcriptional regulator YP_002027632.1 1415281 D 391008 CDS YP_002027633.1 194365023 6475097 1415643..1416632 1 NC_011071.1 KEGG: xcv:XCV1456 hypothetical protein; hypothetical protein 1416632 6475097 Smal_1245 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027633.1 1415643 D 391008 CDS YP_002027634.1 194365024 6475098 complement(1416771..1418078) 1 NC_011071.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: xcb:XC_2885 PHB depolymerase; polyhydroxyalkanoate depolymerase 1418078 6475098 Smal_1246 Stenotrophomonas maltophilia R551-3 polyhydroxyalkanoate depolymerase YP_002027634.1 1416771 R 391008 CDS YP_002027635.1 194365025 6475099 complement(1418172..1418762) 1 NC_011071.1 PFAM: Methyltransferase type 12; KEGG: xcb:XC_2884 hypothetical protein; type 12 methyltransferase 1418762 6475099 Smal_1247 Stenotrophomonas maltophilia R551-3 type 12 methyltransferase YP_002027635.1 1418172 R 391008 CDS YP_002027636.1 194365026 6475100 1418910..1419365 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xac:XAC1402 hypothetical protein; hypothetical protein 1419365 6475100 Smal_1248 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027636.1 1418910 D 391008 CDS YP_002027637.1 194365027 6475101 complement(1419506..1420465) 1 NC_011071.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1420465 6475101 Smal_1249 Stenotrophomonas maltophilia R551-3 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002027637.1 1419506 R 391008 CDS YP_002027638.1 194365028 6475102 complement(1420579..1421448) 1 NC_011071.1 KEGG: esa:ESA_03296 hypothetical protein; hypothetical protein 1421448 6475102 Smal_1250 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027638.1 1420579 R 391008 CDS YP_002027639.1 194365029 6475103 complement(1421504..1425094) 1 NC_011071.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1425094 dnaE 6475103 dnaE Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit alpha YP_002027639.1 1421504 R 391008 CDS YP_002027640.1 194365030 6475104 complement(1425354..1426028) 1 NC_011071.1 PFAM: ribonuclease HII/HIII; KEGG: xcb:XC_2879 ribonuclease HII; Ribonuclease H 1426028 6475104 Smal_1252 Stenotrophomonas maltophilia R551-3 Ribonuclease H YP_002027640.1 1425354 R 391008 CDS YP_002027641.1 194365031 6475105 complement(1426025..1427284) 1 NC_011071.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1427284 lpxB 6475105 lpxB Stenotrophomonas maltophilia R551-3 lipid-A-disaccharide synthase YP_002027641.1 1426025 R 391008 CDS YP_002027642.1 194365032 6475106 complement(1427281..1428072) 1 NC_011071.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1428072 6475106 Smal_1254 Stenotrophomonas maltophilia R551-3 UDP-N-acetylglucosamine acyltransferase YP_002027642.1 1427281 R 391008 CDS YP_002027643.1 194365033 6475107 complement(1428089..1428547) 1 NC_011071.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1428547 fabZ 6475107 fabZ Stenotrophomonas maltophilia R551-3 (3R)-hydroxymyristoyl-ACP dehydratase YP_002027643.1 1428089 R 391008 CDS YP_002027644.1 194365034 6475108 complement(1428544..1429566) 1 NC_011071.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1429566 lpxD 6475108 lpxD Stenotrophomonas maltophilia R551-3 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002027644.1 1428544 R 391008 CDS YP_002027645.1 194365035 6475109 complement(1430030..1432393) 1 NC_011071.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xac:XAC1413 outer membrane antigen; outer membrane protein assembly complex, YaeT protein 1432393 6475109 Smal_1257 Stenotrophomonas maltophilia R551-3 outer membrane protein assembly complex, YaeT protein YP_002027645.1 1430030 R 391008 CDS YP_002027646.1 194365036 6475110 complement(1432468..1433826) 1 NC_011071.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: xcv:XCV1471 putative membrane-associated zinc metalloprotease; membrane-associated zinc metalloprotease 1433826 6475110 Smal_1258 Stenotrophomonas maltophilia R551-3 membrane-associated zinc metalloprotease YP_002027646.1 1432468 R 391008 CDS YP_002027647.1 194365037 6475111 complement(1433882..1435072) 1 NC_011071.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1435072 6475111 Smal_1259 Stenotrophomonas maltophilia R551-3 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002027647.1 1433882 R 391008 CDS YP_002027648.1 194365038 6475112 complement(1435075..1435911) 1 NC_011071.1 PFAM: phosphatidate cytidylyltransferase; KEGG: xac:XAC1416 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1435911 6475112 Smal_1260 Stenotrophomonas maltophilia R551-3 phosphatidate cytidylyltransferase YP_002027648.1 1435075 R 391008 CDS YP_002027649.1 194365039 6475113 complement(1435908..1436675) 1 NC_011071.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1436675 6475113 Smal_1261 Stenotrophomonas maltophilia R551-3 undecaprenyl pyrophosphate synthase YP_002027649.1 1435908 R 391008 CDS YP_002027650.1 194365040 6475114 complement(1436681..1437235) 1 NC_011071.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1437235 frr 6475114 frr Stenotrophomonas maltophilia R551-3 ribosome recycling factor YP_002027650.1 1436681 R 391008 CDS YP_002027651.1 194365041 6475115 complement(1437332..1438060) 1 NC_011071.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1438060 pyrH 6475115 pyrH Stenotrophomonas maltophilia R551-3 uridylate kinase YP_002027651.1 1437332 R 391008 CDS YP_002027652.1 194365042 6475116 complement(1438181..1439719) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; KEGG: xac:XAC1420 hypothetical protein; diguanylate cyclase 1439719 6475116 Smal_1264 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002027652.1 1438181 R 391008 CDS YP_002027653.1 194365043 6475117 complement(1439977..1440852) 1 NC_011071.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1440852 tsf 6475117 tsf Stenotrophomonas maltophilia R551-3 elongation factor Ts YP_002027653.1 1439977 R 391008 CDS YP_002027654.1 194365044 6475118 complement(1440978..1441781) 1 NC_011071.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1441781 rpsB 6475118 rpsB Stenotrophomonas maltophilia R551-3 30S ribosomal protein S2 YP_002027654.1 1440978 R 391008 CDS YP_002027655.1 194365045 6475119 complement(1442002..1442715) 1 NC_011071.1 KEGG: xcb:XC_2862 pili assembly chaperone; pili assembly chaperone 1442715 6475119 Smal_1267 Stenotrophomonas maltophilia R551-3 pili assembly chaperone YP_002027655.1 1442002 R 391008 CDS YP_002027656.1 194365046 6475120 complement(1442715..1442954) 1 NC_011071.1 hypothetical protein 1442954 6475120 Smal_1268 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027656.1 1442715 R 391008 CDS YP_002027657.1 194365047 6475121 complement(1443036..1444055) 1 NC_011071.1 PFAM: Spore coat U domain protein; KEGG: xom:XOO_1870 hypothetical protein; Spore coat U domain-containing protein 1444055 6475121 Smal_1269 Stenotrophomonas maltophilia R551-3 Spore coat U domain-containing protein YP_002027657.1 1443036 R 391008 CDS YP_002027658.1 194365048 6475122 complement(1444052..1446424) 1 NC_011071.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xcb:XC_2859 outer membrane usher protein FasD; fimbrial biogenesis outer membrane usher protein 1446424 6475122 Smal_1270 Stenotrophomonas maltophilia R551-3 fimbrial biogenesis outer membrane usher protein YP_002027658.1 1444052 R 391008 CDS YP_002027659.1 194365049 6475123 complement(1446432..1447166) 1 NC_011071.1 KEGG: xom:XOO_1872 pili assembly chaperone; pili assembly chaperone 1447166 6475123 Smal_1271 Stenotrophomonas maltophilia R551-3 pili assembly chaperone YP_002027659.1 1446432 R 391008 CDS YP_002027660.1 194365050 6475124 complement(1447177..1447704) 1 NC_011071.1 PFAM: Spore coat U domain protein; KEGG: xcv:XCV1484 putative secreted protein; Spore coat U domain-containing protein 1447704 6475124 Smal_1272 Stenotrophomonas maltophilia R551-3 Spore coat U domain-containing protein YP_002027660.1 1447177 R 391008 CDS YP_002027661.1 194365051 6475125 1447944..1448720 1 NC_011071.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1448720 6475125 Smal_1273 Stenotrophomonas maltophilia R551-3 methionine aminopeptidase YP_002027661.1 1447944 D 391008 CDS YP_002027662.1 194365052 6475126 1448723..1451350 1 NC_011071.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1451350 6475126 Smal_1274 Stenotrophomonas maltophilia R551-3 PII uridylyl-transferase YP_002027662.1 1448723 D 391008 CDS YP_002027663.1 194365053 6475127 1451350..1452441 1 NC_011071.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1452441 dapD 6475127 dapD Stenotrophomonas maltophilia R551-3 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002027663.1 1451350 D 391008 CDS YP_002027664.1 194365054 6475128 1452444..1453313 1 NC_011071.1 KEGG: bur:Bcep18194_C6887 hypothetical protein; hypothetical protein 1453313 6475128 Smal_1276 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027664.1 1452444 D 391008 CDS YP_002027665.1 194365055 6475129 1453345..1453716 1 NC_011071.1 PFAM: arsenate reductase and related; KEGG: xcb:XC_2852 hypothetical protein; arsenate reductase-like protein 1453716 6475129 Smal_1277 Stenotrophomonas maltophilia R551-3 arsenate reductase-like protein YP_002027665.1 1453345 D 391008 CDS YP_002027666.1 194365056 6475130 1453713..1454840 1 NC_011071.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1454840 6475130 Smal_1278 Stenotrophomonas maltophilia R551-3 succinyl-diaminopimelate desuccinylase YP_002027666.1 1453713 D 391008 CDS YP_002027667.1 194365057 6475131 complement(1454921..1455799) 1 NC_011071.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: xcb:XC_2850 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1455799 6475131 Smal_1279 Stenotrophomonas maltophilia R551-3 Sel1 domain-containing protein repeat-containing protein YP_002027667.1 1454921 R 391008 CDS YP_002027668.1 194365058 6475132 1456135..1457826 1 NC_011071.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1457826 asnB 6475132 asnB Stenotrophomonas maltophilia R551-3 asparagine synthetase B YP_002027668.1 1456135 D 391008 CDS YP_002027669.1 194365059 6475133 1457933..1459315 1 NC_011071.1 PFAM: sodium/hydrogen exchanger; KEGG: bfs:BF3186 putative Na/H exchanger membrane protein; sodium/hydrogen exchanger 1459315 6475133 Smal_1281 Stenotrophomonas maltophilia R551-3 sodium/hydrogen exchanger YP_002027669.1 1457933 D 391008 CDS YP_002027670.1 194365060 6475134 complement(1459398..1461725) 1 NC_011071.1 PFAM: peptidase S45 penicillin amidase; KEGG: xcb:XC_2845 penicillin acylase II; peptidase S45 penicillin amidase 1461725 6475134 Smal_1282 Stenotrophomonas maltophilia R551-3 peptidase S45 penicillin amidase YP_002027670.1 1459398 R 391008 CDS YP_002027671.1 194365061 6475135 1461851..1462339 1 NC_011071.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: xac:XAC1438 bacterioferritin; bacterioferritin 1462339 6475135 Smal_1283 Stenotrophomonas maltophilia R551-3 bacterioferritin YP_002027671.1 1461851 D 391008 CDS YP_002027672.1 194365062 6475136 complement(1462644..1464887) 1 NC_011071.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1464887 6475136 Smal_1284 Stenotrophomonas maltophilia R551-3 DNA topoisomerase IV subunit A YP_002027672.1 1462644 R 391008 CDS YP_002027673.1 194365063 6475137 complement(1464948..1465829) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_2841 transcriptional regulator; AraC family transcriptional regulator 1465829 6475137 Smal_1285 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027673.1 1464948 R 391008 CDS YP_002027674.1 194365064 6475138 1466002..1466445 1 NC_011071.1 PFAM: regulatory protein MarR; KEGG: xcb:XC_2840 transcriptional regulator MarR family; MarR family transcriptional regulator 1466445 6475138 Smal_1286 Stenotrophomonas maltophilia R551-3 MarR family transcriptional regulator YP_002027674.1 1466002 D 391008 CDS YP_002027675.1 194365065 6475139 1466442..1467938 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xac:XAC1444 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1467938 6475139 Smal_1287 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002027675.1 1466442 D 391008 CDS YP_002027676.1 194365066 6475140 1467950..1469128 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_2838 multidrug resistance efflux pump; secretion protein HlyD family protein 1469128 6475140 Smal_1288 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027676.1 1467950 D 391008 CDS YP_002027677.1 194365067 6475141 1469136..1470725 1 NC_011071.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_2837 multidrug resistance membrane translocase; EmrB/QacA subfamily drug resistance transporter 1470725 6475141 Smal_1289 Stenotrophomonas maltophilia R551-3 EmrB/QacA subfamily drug resistance transporter YP_002027677.1 1469136 D 391008 CDS YP_002027678.1 194365068 6475142 complement(1470858..1471136) 1 NC_011071.1 KEGG: ecp:ECP_1918 hypothetical protein; hypothetical protein 1471136 6475142 Smal_1290 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027678.1 1470858 R 391008 CDS YP_002027679.1 194365069 6475144 complement(1471603..1472502) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1632 transcriptional regulator, LysR family; LysR family transcriptional regulator 1472502 6475144 Smal_1291 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027679.1 1471603 R 391008 CDS YP_002027680.1 194365070 6475145 1472602..1473348 1 NC_011071.1 PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A1633 protein of unknown function DUF81; hypothetical protein 1473348 6475145 Smal_1292 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027680.1 1472602 D 391008 CDS YP_002027681.1 194365071 6475148 1473936..1476395 1 NC_011071.1 KEGG: xcv:XCV1607 RNase R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 1476395 6475148 Smal_1293 Stenotrophomonas maltophilia R551-3 ribonuclease R YP_002027681.1 1473936 D 391008 CDS YP_002027682.1 194365072 6475149 1476499..1476993 1 NC_011071.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: xac:XAC1568 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1476993 6475149 Smal_1294 Stenotrophomonas maltophilia R551-3 glutathione-dependent formaldehyde-activating protein YP_002027682.1 1476499 D 391008 CDS YP_002027683.1 194365073 6475150 1477192..1477935 1 NC_011071.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: xcv:XCV1609 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase 1477935 6475150 Smal_1295 Stenotrophomonas maltophilia R551-3 TrmH family RNA methyltransferase YP_002027683.1 1477192 D 391008 CDS YP_002027684.1 194365074 6475151 complement(1478095..1479534) 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dac:Daci_2315 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 1479534 6475151 Smal_1296 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002027684.1 1478095 R 391008 CDS YP_002027685.1 194365075 6475152 complement(1479531..1481489) 1 NC_011071.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO_0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 1481489 6475152 Smal_1297 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027685.1 1479531 R 391008 CDS YP_002027686.1 194365076 6475153 complement(1481486..1482718) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aci:ACIAD3109 putative secretion protein (HlyD family); RND family efflux transporter MFP subunit 1482718 6475153 Smal_1298 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002027686.1 1481486 R 391008 CDS YP_002027687.1 194365077 6475154 1482923..1483651 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator; winged helix family two component transcriptional regulator 1483651 6475154 Smal_1299 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027687.1 1482923 D 391008 CDS YP_002027688.1 194365078 6475155 1483658..1485067 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mes:Meso_2910 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1485067 6475155 Smal_1300 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027688.1 1483658 D 391008 CDS YP_002027689.1 194365079 6475156 1485245..1488271 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV1610 putative sensor protein; two component regulator propeller domain-containing protein 1488271 6475156 Smal_1301 Stenotrophomonas maltophilia R551-3 two component regulator propeller domain-containing protein YP_002027689.1 1485245 D 391008 CDS YP_002027690.1 194365080 6475157 complement(1488686..1489270) 1 NC_011071.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1489270 6475157 Smal_1302 Stenotrophomonas maltophilia R551-3 ribonuclease T YP_002027690.1 1488686 R 391008 CDS YP_002027691.1 194365081 6475158 complement(1489496..1490017) 1 NC_011071.1 PFAM: DoxX family protein; KEGG: pfo:PflO1_3375 DoxX; DoxX family protein 1490017 6475158 Smal_1303 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002027691.1 1489496 R 391008 CDS YP_002027692.1 194365082 6475159 complement(1490045..1490800) 1 NC_011071.1 KEGG: pfo:PflO1_2082 hypothetical protein; hypothetical protein 1490800 6475159 Smal_1304 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027692.1 1490045 R 391008 CDS YP_002027693.1 194365083 6475160 complement(1490793..1491668) 1 NC_011071.1 PFAM: protein of unknown function DUF692; KEGG: pfo:PflO1_2081 hypothetical protein; hypothetical protein 1491668 6475160 Smal_1305 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027693.1 1490793 R 391008 CDS YP_002027694.1 194365084 6475161 complement(1491655..1492011) 1 NC_011071.1 KEGG: spl:Spea_1502 hypothetical protein; hypothetical protein 1492011 6475161 Smal_1306 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027694.1 1491655 R 391008 CDS YP_002027695.1 194365085 6475162 complement(1492270..1492977) 1 NC_011071.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: xcv:XCV1613 phosphate transport system regulatory protein; phosphate uptake regulator PhoU 1492977 6475162 Smal_1307 Stenotrophomonas maltophilia R551-3 phosphate uptake regulator PhoU YP_002027695.1 1492270 R 391008 CDS YP_002027696.1 194365086 6475163 complement(1493075..1493905) 1 NC_011071.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1493905 pstB 6475163 pstB Stenotrophomonas maltophilia R551-3 phosphate transporter ATP-binding protein YP_002027696.1 1493075 R 391008 CDS YP_002027697.1 194365087 6475164 complement(1493925..1494788) 1 NC_011071.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcc:XCC1525 ABC transporter phosphate permease; phosphate ABC transporter permease 1494788 6475164 Smal_1309 Stenotrophomonas maltophilia R551-3 phosphate ABC transporter permease YP_002027697.1 1493925 R 391008 CDS YP_002027698.1 194365088 6475165 complement(1494788..1495756) 1 NC_011071.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xac:XAC1576 ABC transporter phosphate permease; phosphate ABC transporter permease 1495756 6475165 Smal_1310 Stenotrophomonas maltophilia R551-3 phosphate ABC transporter permease YP_002027698.1 1494788 R 391008 CDS YP_002027699.1 194365089 6475166 complement(1495839..1496927) 1 NC_011071.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_2708 ABC transporter phosphate binding protein; phosphate ABC transporter substrate-binding protein 1496927 6475166 Smal_1311 Stenotrophomonas maltophilia R551-3 phosphate ABC transporter substrate-binding protein YP_002027699.1 1495839 R 391008 CDS YP_002027700.1 194365090 6475167 complement(1497570..1498586) 1 NC_011071.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xom:XOO_2333 phosphate binding protein; phosphate ABC transporter substrate-binding protein 1498586 6475167 Smal_1312 Stenotrophomonas maltophilia R551-3 phosphate ABC transporter substrate-binding protein YP_002027700.1 1497570 R 391008 CDS YP_002027701.1 194365091 6475168 1499139..1500371 1 NC_011071.1 PFAM: phosphate-selective porin O and P; KEGG: zmo:ZMO1045 hypothetical protein; phosphate-selective porin O and P 1500371 6475168 Smal_1313 Stenotrophomonas maltophilia R551-3 phosphate-selective porin O and P YP_002027701.1 1499139 D 391008 CDS YP_002027702.1 194365092 6475169 complement(1500452..1501144) 1 NC_011071.1 KEGG: xcv:XCV1623 putative endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 1501144 6475169 Smal_1314 Stenotrophomonas maltophilia R551-3 endonuclease III YP_002027702.1 1500452 R 391008 CDS YP_002027703.1 194365093 6475170 complement(1501144..1501497) 1 NC_011071.1 KEGG: xoo:XOO2453 hypothetical protein; hypothetical protein 1501497 6475170 Smal_1315 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027703.1 1501144 R 391008 CDS YP_002027704.1 194365094 6475171 complement(1501502..1502284) 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xac:XAC1584 3-hydroxybutyryl-CoA dehydratase; enoyl-CoA hydratase/isomerase 1502284 6475171 Smal_1316 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase/isomerase YP_002027704.1 1501502 R 391008 CDS YP_002027705.1 194365095 6475172 1502452..1503153 1 NC_011071.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: xom:XOO_2322 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidyl-prolyl isomerase domain-containing protein 1503153 6475172 Smal_1317 Stenotrophomonas maltophilia R551-3 FKBP-type peptidyl-prolyl isomerase domain-containing protein YP_002027705.1 1502452 D 391008 CDS YP_002027706.1 194365096 6475173 1503439..1504242 1 NC_011071.1 PFAM: NUDIX hydrolase; protein of unknown function DUF1289; KEGG: xcv:XCV1627 putative NUDIX hydrolase family protein; hypothetical protein 1504242 6475173 Smal_1318 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027706.1 1503439 D 391008 CDS YP_002027707.1 194365097 6475174 1504239..1505141 1 NC_011071.1 PFAM: Rhodanese domain protein; KEGG: xcv:XCV1628 thiosulfate sulfurtransferase; rhodanese domain-containing protein 1505141 6475174 Smal_1319 Stenotrophomonas maltophilia R551-3 rhodanese domain-containing protein YP_002027707.1 1504239 D 391008 CDS YP_002027708.1 194365098 6475175 complement(1505569..1506135) 1 NC_011071.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: xcb:XC_2695 hypothetical protein; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 1506135 6475175 Smal_1320 Stenotrophomonas maltophilia R551-3 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_002027708.1 1505569 R 391008 CDS YP_002027709.1 194365099 6475176 1506208..1506735 1 NC_011071.1 KEGG: xac:XAC1591 hypothetical protein; hypothetical protein 1506735 6475176 Smal_1321 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027709.1 1506208 D 391008 CDS YP_002027710.1 194365100 6475177 1506880..1509018 1 NC_011071.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1509018 rlmL 6475177 rlmL Stenotrophomonas maltophilia R551-3 23S rRNA m(2)G2445 methyltransferase YP_002027710.1 1506880 D 391008 CDS YP_002027711.1 194365101 6475178 complement(1509140..1509469) 1 NC_011071.1 KEGG: xcb:XC_0260 hypothetical protein; hypothetical protein 1509469 6475178 Smal_1323 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027711.1 1509140 R 391008 CDS YP_002027712.1 194365102 6475179 complement(1509466..1511103) 1 NC_011071.1 KEGG: xcv:XCV0278 hypothetical protein; hypothetical protein 1511103 6475179 Smal_1324 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027712.1 1509466 R 391008 CDS YP_002027713.1 194365103 6475180 complement(1511100..1511414) 1 NC_011071.1 KEGG: xcv:XCV0279 hypothetical protein; hypothetical protein 1511414 6475180 Smal_1325 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027713.1 1511100 R 391008 CDS YP_002027714.1 194365104 6475181 complement(1511522..1513747) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:PflO1_2583 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1513747 6475181 Smal_1326 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027714.1 1511522 R 391008 CDS YP_002027715.1 194365105 6475182 complement(1514039..1515325) 1 NC_011071.1 PFAM: protein of unknown function DUF445; KEGG: xac:XAC2491 hypothetical protein; hypothetical protein 1515325 6475182 Smal_1327 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027715.1 1514039 R 391008 CDS YP_002027716.1 194365106 6475183 complement(1515444..1516322) 1 NC_011071.1 KEGG: xcv:XCV2669 hypothetical protein; hypothetical protein 1516322 6475183 Smal_1328 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027716.1 1515444 R 391008 CDS YP_002027717.1 194365107 6475184 complement(1516386..1517738) 1 NC_011071.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1517738 6475184 Smal_1329 Stenotrophomonas maltophilia R551-3 beta alanine--pyruvate transaminase YP_002027717.1 1516386 R 391008 CDS YP_002027718.1 194365108 6475185 1517905..1519401 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: psa:PST_0046 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 1519401 6475185 Smal_1330 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002027718.1 1517905 D 391008 CDS YP_002027719.1 194365109 6475186 complement(1519555..1520196) 1 NC_011071.1 KEGG: rru:Rru_A0746 hypothetical protein; hypothetical protein 1520196 6475186 Smal_1331 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027719.1 1519555 R 391008 CDS YP_002027720.1 194365110 6475187 1520344..1521645 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xoo:XOO2788 metabolite transport protein; major facilitator superfamily protein 1521645 6475187 Smal_1332 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027720.1 1520344 D 391008 CDS YP_002027721.1 194365111 6475188 complement(1521626..1522087) 1 NC_011071.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: xcb:XC_1765 hypothetical protein; hypothetical protein 1522087 6475188 Smal_1333 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027721.1 1521626 R 391008 CDS YP_002027722.1 194365112 6475189 complement(1522173..1523516) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: xcv:XCV2660 two-component system response regulator; response regulator receiver modulated diguanylate cyclase 1523516 6475189 Smal_1334 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated diguanylate cyclase YP_002027722.1 1522173 R 391008 CDS YP_002027723.1 194365113 6475190 complement(1523575..1525185) 1 NC_011071.1 PFAM: MASE1 domain protein; KEGG: xcb:XC_2013 sensor kinase; MASE1 domain-containing protein 1525185 6475190 Smal_1335 Stenotrophomonas maltophilia R551-3 MASE1 domain-containing protein YP_002027723.1 1523575 R 391008 CDS YP_002027724.1 194365114 6475191 1525486..1525911 1 NC_011071.1 KEGG: aav:Aave_0536 putative secreted protein; hypothetical protein 1525911 6475191 Smal_1336 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027724.1 1525486 D 391008 CDS YP_002027725.1 194365115 6475192 complement(1526039..1527637) 1 NC_011071.1 PFAM: MASE1 domain protein; KEGG: xcv:XCV1810 putative sugar transporter component; MASE1 domain-containing protein 1527637 6475192 Smal_1337 Stenotrophomonas maltophilia R551-3 MASE1 domain-containing protein YP_002027725.1 1526039 R 391008 CDS YP_002027726.1 194365116 6475193 complement(1527836..1529113) 1 NC_011071.1 PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_1767 hypothetical protein; FAD dependent oxidoreductase 1529113 6475193 Smal_1338 Stenotrophomonas maltophilia R551-3 FAD dependent oxidoreductase YP_002027726.1 1527836 R 391008 CDS YP_002027727.1 194365117 6475194 1529275..1530036 1 NC_011071.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: xcb:XC_1769 glutamine amidotransferase; peptidase C26 1530036 6475194 Smal_1339 Stenotrophomonas maltophilia R551-3 peptidase C26 YP_002027727.1 1529275 D 391008 CDS YP_002027728.1 194365118 6475195 1530033..1531427 1 NC_011071.1 PFAM: glutamine synthetase catalytic region; KEGG: xoo:XOO2782 glutamine synthetase; glutamate--putrescine ligase 1531427 6475195 Smal_1340 Stenotrophomonas maltophilia R551-3 glutamate--putrescine ligase YP_002027728.1 1530033 D 391008 CDS YP_002027729.1 194365119 6475196 1531519..1532628 1 NC_011071.1 PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_1772 periplasmic putrescine-binding protein; permease protein; family 1 extracellular solute-binding protein 1532628 6475196 Smal_1341 Stenotrophomonas maltophilia R551-3 family 1 extracellular solute-binding protein YP_002027729.1 1531519 D 391008 CDS YP_002027730.1 194365120 6475197 complement(1532685..1534085) 1 NC_011071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2255 putative flavoprotein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1534085 6475197 Smal_1342 Stenotrophomonas maltophilia R551-3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002027730.1 1532685 R 391008 CDS YP_002027731.1 194365121 6475198 1534359..1535495 1 NC_011071.1 KEGG: xac:XAC2472 ATP-binding component of putrescine transport system; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1535495 6475198 Smal_1343 Stenotrophomonas maltophilia R551-3 spermidine/putrescine ABC transporter ATPase YP_002027731.1 1534359 D 391008 CDS YP_002027732.1 194365122 6475199 1535492..1536424 1 NC_011071.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV2649 putrescine ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1536424 6475199 Smal_1344 Stenotrophomonas maltophilia R551-3 binding-protein-dependent transport system inner membrane protein YP_002027732.1 1535492 D 391008 CDS YP_002027733.1 194365123 6475200 1536421..1537263 1 NC_011071.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV2648 putrescine ABC transporter permease; ornithine carbamoyltransferase 1537263 6475200 Smal_1345 Stenotrophomonas maltophilia R551-3 ornithine carbamoyltransferase YP_002027733.1 1536421 D 391008 CDS YP_002027734.1 194365124 6475201 1537347..1538711 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: xcv:XCV2647 putative aldehyde dehydrogenase; aldehyde dehydrogenase 1538711 6475201 Smal_1346 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002027734.1 1537347 D 391008 CDS YP_002027735.1 194365125 6475202 complement(1538852..1539874) 1 NC_011071.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: xac:XAC2468 magnesium and cobalt transport protein; Mg2 transporter protein CorA family protein 1539874 6475202 Smal_1347 Stenotrophomonas maltophilia R551-3 Mg2 transporter protein CorA family protein YP_002027735.1 1538852 R 391008 CDS YP_002027736.1 194365126 6475203 complement(1539881..1541131) 1 NC_011071.1 KEGG: xac:XAC2467 hypothetical protein; hypothetical protein 1541131 6475203 Smal_1348 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027736.1 1539881 R 391008 CDS YP_002027737.1 194365127 6475204 complement(1541128..1542009) 1 NC_011071.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein; hypothetical protein 1542009 6475204 Smal_1349 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027737.1 1541128 R 391008 CDS YP_002027738.1 194365128 6475205 complement(1542074..1542631) 1 NC_011071.1 KEGG: xac:XAC2465 hypothetical protein; hypothetical protein 1542631 6475205 Smal_1350 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027738.1 1542074 R 391008 CDS YP_002027739.1 194365129 6475206 complement(1542660..1543268) 1 NC_011071.1 hypothetical protein 1543268 6475206 Smal_1351 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027739.1 1542660 R 391008 CDS YP_002027740.1 194365130 6475207 complement(1543311..1543796) 1 NC_011071.1 PFAM: protein of unknown function UPF0054; KEGG: xac:XAC2464 hypothetical protein; putative metalloprotease 1543796 6475207 Smal_1352 Stenotrophomonas maltophilia R551-3 putative metalloprotease YP_002027740.1 1543311 R 391008 CDS YP_002027741.1 194365131 6475208 complement(1543793..1544779) 1 NC_011071.1 PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein; PhoH family protein 1544779 6475208 Smal_1353 Stenotrophomonas maltophilia R551-3 PhoH family protein YP_002027741.1 1543793 R 391008 CDS YP_002027742.1 194365132 6475209 1545298..1546248 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: saz:Sama_3589 putative HlyD family secretion protein; secretion protein HlyD family protein 1546248 6475209 Smal_1354 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027742.1 1545298 D 391008 CDS YP_002027743.1 194365133 6475210 1546245..1547192 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_2574 ABC transporter related; ABC transporter-like protein 1547192 6475210 Smal_1355 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027743.1 1546245 D 391008 CDS YP_002027744.1 194365134 6475211 1547189..1548301 1 NC_011071.1 PFAM: ABC-2 type transporter; KEGG: aha:AHA_0486 ABC-type multidrug transport system, permease component; ABC-2 type transporter 1548301 6475211 Smal_1356 Stenotrophomonas maltophilia R551-3 ABC-2 type transporter YP_002027744.1 1547189 D 391008 CDS YP_002027745.1 194365135 6475212 complement(1548368..1549786) 1 NC_011071.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1549786 6475212 Smal_1357 Stenotrophomonas maltophilia R551-3 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002027745.1 1548368 R 391008 CDS YP_002027746.1 194365136 6475213 complement(1549956..1550576) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: met:M446_4826 glutathione S-transferase domain; glutathione S-transferase domain-containing protein 1550576 6475213 Smal_1358 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002027746.1 1549956 R 391008 CDS YP_002027747.1 194365137 6475214 1550657..1551625 1 NC_011071.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: xcb:XC_1790 repressor; helix-turn-helix type 11 domain-containing protein 1551625 6475214 Smal_1359 Stenotrophomonas maltophilia R551-3 helix-turn-helix type 11 domain-containing protein YP_002027747.1 1550657 D 391008 CDS YP_002027748.1 194365138 6475215 1551672..1552586 1 NC_011071.1 PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC2458 soluble lytic murein transglycosylase; Lytic transglycosylase 1552586 6475215 Smal_1360 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002027748.1 1551672 D 391008 CDS YP_002027749.1 194365139 6475216 1552798..1553418 1 NC_011071.1 KEGG: xcb:XC_1792 ubiquinol cytochrome c oxidoreductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1553418 6475216 Smal_1361 Stenotrophomonas maltophilia R551-3 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_002027749.1 1552798 D 391008 CDS YP_002027750.1 194365140 6475217 1553418..1554677 1 NC_011071.1 PFAM: Cytochrome b/b6 domain; KEGG: xom:XOO_2601 ubiquinol cytochrome c oxidoreductase; Cytochrome b/b6 domain 1554677 6475217 Smal_1362 Stenotrophomonas maltophilia R551-3 Cytochrome b/b6 domain YP_002027750.1 1553418 D 391008 CDS YP_002027751.1 194365141 6475218 1554670..1555419 1 NC_011071.1 PFAM: cytochrome c1; KEGG: xcb:XC_1794 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; cytochrome c1 1555419 6475218 Smal_1363 Stenotrophomonas maltophilia R551-3 cytochrome c1 YP_002027751.1 1554670 D 391008 CDS YP_002027752.1 194365142 6475219 1555554..1556189 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xac:XAC2454 stringent starvation protein A; glutathione S-transferase domain-containing protein 1556189 6475219 Smal_1364 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002027752.1 1555554 D 391008 CDS YP_002027753.1 194365143 6475220 1556274..1556726 1 NC_011071.1 PFAM: Stringent starvation protein B; KEGG: xac:XAC2453 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 1556726 6475220 Smal_1365 Stenotrophomonas maltophilia R551-3 ClpXP protease specificity-enhancing factor YP_002027753.1 1556274 D 391008 CDS YP_002027754.1 194365144 6475221 complement(1556880..1557230) 1 NC_011071.1 KEGG: xcb:XC_1798 hypothetical protein; hypothetical protein 1557230 6475221 Smal_1366 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027754.1 1556880 R 391008 CDS YP_002027755.1 194365145 6475222 complement(1557298..1558299) 1 NC_011071.1 KEGG: xcv:XCV2832 putative secreted protein; hypothetical protein 1558299 6475222 Smal_1367 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027755.1 1557298 R 391008 CDS YP_002027756.1 194365146 6475223 complement(1558415..1559266) 1 NC_011071.1 KEGG: xcb:XC_1611 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1559266 6475223 Smal_1368 Stenotrophomonas maltophilia R551-3 nicotinate-nucleotide pyrophosphorylase YP_002027756.1 1558415 R 391008 CDS YP_002027757.1 194365147 6475224 complement(1559263..1559532) 1 NC_011071.1 PFAM: protein of unknown function DUF343; KEGG: xac:XAC2680 hypothetical protein; hypothetical protein 1559532 6475224 Smal_1369 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027757.1 1559263 R 391008 CDS YP_002027758.1 194365148 6475225 1559591..1560094 1 NC_011071.1 KEGG: xcb:XC_1613 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1560094 6475225 Smal_1370 Stenotrophomonas maltophilia R551-3 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002027758.1 1559591 D 391008 CDS YP_002027759.1 194365149 6475226 1560091..1561239 1 NC_011071.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1561239 6475226 Smal_1371 Stenotrophomonas maltophilia R551-3 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002027759.1 1560091 D 391008 CDS YP_002027760.1 194365150 6475227 1561352..1561693 1 NC_011071.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_A3878 alkylhydroperoxidase AhpD core; alkylhydroperoxidase-like protein 1561693 6475227 Smal_1372 Stenotrophomonas maltophilia R551-3 alkylhydroperoxidase-like protein YP_002027760.1 1561352 D 391008 CDS YP_002027761.1 194365151 6475228 complement(1561732..1562310) 1 NC_011071.1 PFAM: manganese and iron superoxide dismutase; KEGG: xac:XAC2677 iron superoxide dismutase; Superoxide dismutase 1562310 6475228 Smal_1373 Stenotrophomonas maltophilia R551-3 Superoxide dismutase YP_002027761.1 1561732 R 391008 CDS YP_002027762.1 194365152 6475229 1562430..1562750 1 NC_011071.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: xcb:XC_1616 hypothetical protein; glutaredoxin-like protein 1562750 6475229 Smal_1374 Stenotrophomonas maltophilia R551-3 glutaredoxin-like protein YP_002027762.1 1562430 D 391008 CDS YP_002027763.1 194365153 6475230 1562747..1563523 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_3039 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1563523 6475230 Smal_1375 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002027763.1 1562747 D 391008 CDS YP_002027764.1 194365154 6475231 1563754..1566999 1 NC_011071.1 KEGG: xcv:XCV2823 TonB-dependent outer membrane receptor; TonB-dependent outer membrane receptor 1566999 6475231 Smal_1376 Stenotrophomonas maltophilia R551-3 TonB-dependent outer membrane receptor YP_002027764.1 1563754 D 391008 CDS YP_002027765.1 194365155 6475232 1567253..1568641 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcv:XCV2822 hypothetical protein; hypothetical protein 1568641 6475232 Smal_1377 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027765.1 1567253 D 391008 CDS YP_002027766.1 194365156 6475233 1568815..1569330 1 NC_011071.1 KEGG: xcv:XCV2821 putative type IV pilus assembly protein FimT; putative type IV pilus assembly protein FimT 1569330 6475233 Smal_1378 Stenotrophomonas maltophilia R551-3 putative type IV pilus assembly protein FimT YP_002027766.1 1568815 D 391008 CDS YP_002027767.1 194365157 6475234 1569327..1569824 1 NC_011071.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: xcv:XCV2820 putative type IV pilus assembly protein PilV; type IV pilus modification protein PilV 1569824 6475234 Smal_1379 Stenotrophomonas maltophilia R551-3 type IV pilus modification protein PilV YP_002027767.1 1569327 D 391008 CDS YP_002027768.1 194365158 6475235 1569833..1570990 1 NC_011071.1 KEGG: xcb:XC_1623 hypothetical protein; hypothetical protein 1570990 6475235 Smal_1380 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027768.1 1569833 D 391008 CDS YP_002027769.1 194365159 6475236 1570996..1571517 1 NC_011071.1 KEGG: xom:XOO_3032 PilX protein; PilX protein 1571517 6475236 Smal_1381 Stenotrophomonas maltophilia R551-3 PilX protein YP_002027769.1 1570996 D 391008 CDS YP_002027770.1 194365160 6475237 1571531..1575295 1 NC_011071.1 KEGG: xom:XOO_3031 PilY1 protein; PilY1 protein 1575295 6475237 Smal_1382 Stenotrophomonas maltophilia R551-3 PilY1 protein YP_002027770.1 1571531 D 391008 CDS YP_002027771.1 194365161 6475238 1575319..1575726 1 NC_011071.1 KEGG: xcv:XCV2814 type IV pilin PilE; type IV pilin PilE 1575726 6475238 Smal_1383 Stenotrophomonas maltophilia R551-3 type IV pilin PilE YP_002027771.1 1575319 D 391008 CDS YP_002027772.1 194365162 6475240 complement(1575903..1576397) 1 NC_011071.1 KEGG: xcb:XC_1627 fimbrial biogenesis protein; fimbrial biogenesis protein 1576397 6475240 Smal_1384 Stenotrophomonas maltophilia R551-3 fimbrial biogenesis protein YP_002027772.1 1575903 R 391008 CDS YP_002027773.1 194365163 6475241 1576568..1578592 1 NC_011071.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1578592 6475241 Smal_1385 Stenotrophomonas maltophilia R551-3 excinuclease ABC subunit B YP_002027773.1 1576568 D 391008 CDS YP_002027774.1 194365164 6475244 complement(1579038..1579379) 1 NC_011071.1 hypothetical protein 1579379 6475244 Smal_1386 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027774.1 1579038 R 391008 CDS YP_002027775.1 194365165 6475245 complement(1579609..1579800) 1 NC_011071.1 hypothetical protein 1579800 6475245 Smal_1387 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027775.1 1579609 R 391008 CDS YP_002027776.1 194365166 6475246 complement(1579832..1580020) 1 NC_011071.1 hypothetical protein 1580020 6475246 Smal_1388 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027776.1 1579832 R 391008 CDS YP_002027777.1 194365167 6475247 complement(1580132..1580701) 1 NC_011071.1 PFAM: Redoxin domain protein; KEGG: tcx:Tcr_1569 putative thioredoxin; redoxin domain-containing protein 1580701 6475247 Smal_1389 Stenotrophomonas maltophilia R551-3 redoxin domain-containing protein YP_002027777.1 1580132 R 391008 CDS YP_002027778.1 194365168 6475248 1580864..1581004 1 NC_011071.1 hypothetical protein 1581004 6475248 Smal_1390 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027778.1 1580864 D 391008 CDS YP_002027779.1 194365169 6475249 complement(1581059..1581343) 1 NC_011071.1 hypothetical protein 1581343 6475249 Smal_1391 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027779.1 1581059 R 391008 CDS YP_002027780.1 194365170 6475250 complement(1581376..1582143) 1 NC_011071.1 PFAM: MltA-interacting MipA family protein; KEGG: spe:Spro_3701 MltA-interacting MipA family protein; MltA-interacting MipA family protein 1582143 6475250 Smal_1392 Stenotrophomonas maltophilia R551-3 MltA-interacting MipA family protein YP_002027780.1 1581376 R 391008 CDS YP_002027781.1 194365171 6475251 1582288..1582959 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator; winged helix family two component transcriptional regulator 1582959 6475251 Smal_1393 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002027781.1 1582288 D 391008 CDS YP_002027782.1 194365172 6475252 1582961..1584304 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 1584304 6475252 Smal_1394 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027782.1 1582961 D 391008 CDS YP_002027783.1 194365173 6475253 1584363..1586762 1 NC_011071.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: xac:XAC2084 competence protein; DNA internalization-related competence protein ComEC/Rec2 1586762 6475253 Smal_1395 Stenotrophomonas maltophilia R551-3 DNA internalization-related competence protein ComEC/Rec2 YP_002027783.1 1584363 D 391008 CDS YP_002027784.1 194365174 6475254 1586766..1587428 1 NC_011071.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC2085 biopolymer transport protein; MotA/TolQ/ExbB proton channel 1587428 6475254 Smal_1396 Stenotrophomonas maltophilia R551-3 MotA/TolQ/ExbB proton channel YP_002027784.1 1586766 D 391008 CDS YP_002027785.1 194365175 6475255 1587432..1587854 1 NC_011071.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV2253 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR 1587854 6475255 Smal_1397 Stenotrophomonas maltophilia R551-3 biopolymer transport protein ExbD/TolR YP_002027785.1 1587432 D 391008 CDS YP_002027786.1 194365176 6475256 1587851..1589599 1 NC_011071.1 KEGG: xcb:XC_1995 ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 1589599 6475256 Smal_1398 Stenotrophomonas maltophilia R551-3 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_002027786.1 1587851 D 391008 CDS YP_002027787.1 194365177 6475257 1589599..1590618 1 NC_011071.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1590618 lpxK 6475257 lpxK Stenotrophomonas maltophilia R551-3 tetraacyldisaccharide 4'-kinase YP_002027787.1 1589599 D 391008 CDS YP_002027788.1 194365178 6475258 1590694..1591467 1 NC_011071.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1591467 6475258 Smal_1400 Stenotrophomonas maltophilia R551-3 3-deoxy-manno-octulosonate cytidylyltransferase YP_002027788.1 1590694 D 391008 CDS YP_002027789.1 194365179 6475259 1591464..1591952 1 NC_011071.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: xcb:XC_1998 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1591952 6475259 Smal_1401 Stenotrophomonas maltophilia R551-3 protein tyrosine phosphatase YP_002027789.1 1591464 D 391008 CDS YP_002027790.1 194365180 6475260 1591949..1593361 1 NC_011071.1 PFAM: NHL repeat containing protein; KEGG: xac:XAC2091 hypothetical protein; NHL repeat containing protein 1593361 6475260 Smal_1402 Stenotrophomonas maltophilia R551-3 NHL repeat containing protein YP_002027790.1 1591949 D 391008 CDS YP_002027791.1 194365181 6475261 1593358..1595202 1 NC_011071.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1595202 uvrC 6475261 uvrC Stenotrophomonas maltophilia R551-3 excinuclease ABC subunit C YP_002027791.1 1593358 D 391008 CDS YP_002027792.1 194365182 6475262 1595221..1595847 1 NC_011071.1 KEGG: xcc:XCC2114 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1595847 6475262 Smal_1404 Stenotrophomonas maltophilia R551-3 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_002027792.1 1595221 D 391008 CDS YP_002027793.1 194365183 6475264 1596232..1597338 1 NC_011071.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rme:Rmet_1653 monooxygenase, FAD-binding; monooxygenase FAD-binding 1597338 6475264 Smal_1405 Stenotrophomonas maltophilia R551-3 monooxygenase FAD-binding YP_002027793.1 1596232 D 391008 CDS YP_002027794.1 194365184 6475266 complement(1597596..1597898) 1 NC_011071.1 KEGG: pfl:PFL_6208 hypothetical protein; hypothetical protein 1597898 6475266 Smal_1406 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027794.1 1597596 R 391008 CDS YP_002027795.1 194365185 6475267 1598272..1599597 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_4322 transcriptional regulator, fis family; NodT family RND efflux system outer membrane lipoprotein 1599597 6475267 Smal_1407 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002027795.1 1598272 D 391008 CDS YP_002027796.1 194365186 6475268 1599594..1600733 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: dac:Daci_0126 protein of unknown function DUF214; hypothetical protein 1600733 6475268 Smal_1408 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027796.1 1599594 D 391008 CDS YP_002027797.1 194365187 6475269 1600744..1601472 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4324 ABC transporter-related protein; ABC transporter-like protein 1601472 6475269 Smal_1409 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027797.1 1600744 D 391008 CDS YP_002027798.1 194365188 6475270 1601469..1602383 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_0128 secretion protein HlyD family protein; secretion protein HlyD family protein 1602383 6475270 Smal_1410 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027798.1 1601469 D 391008 CDS YP_002027799.1 194365189 6475271 complement(1602386..1602835) 1 NC_011071.1 KEGG: lic:LIC11069 hypothetical protein; hypothetical protein 1602835 6475271 Smal_1411 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027799.1 1602386 R 391008 CDS YP_002027800.1 194365190 6475272 complement(1602828..1603229) 1 NC_011071.1 KEGG: pfo:PflO1_5588 hypothetical protein; hypothetical protein 1603229 6475272 Smal_1412 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027800.1 1602828 R 391008 CDS YP_002027801.1 194365191 6475276 1603983..1604798 1 NC_011071.1 KEGG: mgi:Mflv_2084 hypothetical protein; hypothetical protein 1604798 6475276 Smal_1413 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027801.1 1603983 D 391008 CDS YP_002027802.1 194365192 6475277 complement(1604891..1605568) 1 NC_011071.1 KEGG: bcl:ABC1173 hypothetical protein; hypothetical protein 1605568 6475277 Smal_1414 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027802.1 1604891 R 391008 CDS YP_002027803.1 194365193 6475278 1605674..1606378 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: met:M446_4445 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1606378 6475278 Smal_1415 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002027803.1 1605674 D 391008 CDS YP_002027804.1 194365194 6475279 1606503..1606772 1 NC_011071.1 hypothetical protein 1606772 6475279 Smal_1416 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027804.1 1606503 D 391008 CDS YP_002027805.1 194365195 6475280 complement(1606791..1607555) 1 NC_011071.1 KEGG: sen:SACE_5385 hypothetical protein; hypothetical protein 1607555 6475280 Smal_1417 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027805.1 1606791 R 391008 CDS YP_002027806.1 194365196 6475281 complement(1607673..1607873) 1 NC_011071.1 hypothetical protein 1607873 6475281 Smal_1418 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027806.1 1607673 R 391008 CDS YP_002027807.1 194365197 6475282 complement(1607964..1609040) 1 NC_011071.1 KEGG: sus:Acid_1970 hypothetical protein; hypothetical protein 1609040 6475282 Smal_1419 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027807.1 1607964 R 391008 CDS YP_002027808.1 194365198 6475283 1609303..1609815 1 NC_011071.1 KEGG: dac:Daci_3561 hypothetical protein; hypothetical protein 1609815 6475283 Smal_1420 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027808.1 1609303 D 391008 CDS YP_002027809.1 194365199 6475284 1609912..1610745 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_0168 transcriptional regulator, AraC family; AraC family transcriptional regulator 1610745 6475284 Smal_1421 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027809.1 1609912 D 391008 CDS YP_002027810.1 194365200 6475285 complement(1610749..1611141) 1 NC_011071.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: nha:Nham_3430 CrcB protein; CrcB protein 1611141 6475285 Smal_1422 Stenotrophomonas maltophilia R551-3 CrcB protein YP_002027810.1 1610749 R 391008 CDS YP_002027811.1 194365201 6475286 complement(1611310..1611711) 1 NC_011071.1 KEGG: tpt:Tpet_1197 phosphoesterase, RecJ domain protein; hypothetical protein 1611711 6475286 Smal_1423 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027811.1 1611310 R 391008 CDS YP_002027812.1 194365202 6475287 1611823..1612032 1 NC_011071.1 hypothetical protein 1612032 6475287 Smal_1424 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027812.1 1611823 D 391008 CDS YP_002027813.1 194365203 6475288 1612386..1612622 1 NC_011071.1 KEGG: xcb:XC_3779 hypothetical protein; hypothetical protein 1612622 6475288 Smal_1425 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027813.1 1612386 D 391008 CDS YP_002027814.1 194365204 6475289 complement(1612624..1613673) 1 NC_011071.1 KEGG: aeh:Mlg_1877 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1613673 6475289 Smal_1426 Stenotrophomonas maltophilia R551-3 4Fe-4S ferredoxin YP_002027814.1 1612624 R 391008 CDS YP_002027815.1 194365205 6475290 complement(1613670..1613957) 1 NC_011071.1 KEGG: aeh:Mlg_1878 hypothetical protein; hypothetical protein 1613957 6475290 Smal_1427 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027815.1 1613670 R 391008 CDS YP_002027816.1 194365206 6475291 1614136..1614576 1 NC_011071.1 KEGG: net:Neut_1441 putative sec-independent protein translocase protein TatC; putative sec-independent protein translocase protein TatC 1614576 6475291 Smal_1428 Stenotrophomonas maltophilia R551-3 putative sec-independent protein translocase protein TatC YP_002027816.1 1614136 D 391008 CDS YP_002027817.1 194365207 6475292 1614621..1616030 1 NC_011071.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1616030 6475292 Smal_1429 Stenotrophomonas maltophilia R551-3 coproporphyrinogen III oxidase YP_002027817.1 1614621 D 391008 CDS YP_002027818.1 194365208 6475294 1616282..1616716 1 NC_011071.1 PFAM: BLUF domain protein; KEGG: xac:XAC2120 hypothetical protein; BLUF domain-containing protein 1616716 6475294 Smal_1430 Stenotrophomonas maltophilia R551-3 BLUF domain-containing protein YP_002027818.1 1616282 D 391008 CDS YP_002027819.1 194365209 6475295 1616858..1618144 1 NC_011071.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: xom:XOO_2935 polysaccharide biosynthetic protein; nucleotide sugar dehydrogenase 1618144 6475295 Smal_1431 Stenotrophomonas maltophilia R551-3 nucleotide sugar dehydrogenase YP_002027819.1 1616858 D 391008 CDS YP_002027820.1 194365210 6475296 1618200..1619822 1 NC_011071.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: maq:Maqu_2046 ferredoxin-dependent glutamate synthase; glutamate synthase 1619822 6475296 Smal_1432 Stenotrophomonas maltophilia R551-3 glutamate synthase YP_002027820.1 1618200 D 391008 CDS YP_002027821.1 194365211 6475297 1619926..1620387 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: swd:Swoo_1850 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1620387 6475297 Smal_1433 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027821.1 1619926 D 391008 CDS YP_002027822.1 194365212 6475298 complement(1620497..1621744) 1 NC_011071.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_2092 hypothetical protein; hypothetical protein 1621744 6475298 Smal_1434 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027822.1 1620497 R 391008 CDS YP_002027823.1 194365213 6475299 complement(1621731..1622165) 1 NC_011071.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: xom:XOO_2933 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 1622165 6475299 Smal_1435 Stenotrophomonas maltophilia R551-3 FKBP-type peptidylprolyl isomerase YP_002027823.1 1621731 R 391008 CDS YP_002027824.1 194365214 6475300 1622236..1622601 1 NC_011071.1 KEGG: xcb:XC_2094 hypothetical protein; hypothetical protein 1622601 6475300 Smal_1436 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027824.1 1622236 D 391008 CDS YP_002027825.1 194365215 6475301 1622907..1623674 1 NC_011071.1 PFAM: Rhodanese domain protein; KEGG: xcb:XC_2095 hypothetical protein; rhodanese superfamily protein 1623674 6475301 Smal_1437 Stenotrophomonas maltophilia R551-3 rhodanese superfamily protein YP_002027825.1 1622907 D 391008 CDS YP_002027826.1 194365216 6475302 1623883..1624878 1 NC_011071.1 PFAM: Luciferase-like monooxygenase; KEGG: xac:XAC1706 hypothetical protein; luciferase-like monooxygenase 1624878 6475302 Smal_1438 Stenotrophomonas maltophilia R551-3 luciferase-like monooxygenase YP_002027826.1 1623883 D 391008 CDS YP_002027827.1 194365217 6475303 1624947..1625444 1 NC_011071.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: xcb:XC_2544 general stress protein; pyridoxamine 5'-phosphate oxidase-like protein 1625444 6475303 Smal_1439 Stenotrophomonas maltophilia R551-3 pyridoxamine 5'-phosphate oxidase-like protein YP_002027827.1 1624947 D 391008 CDS YP_002027828.1 194365218 6475304 complement(1625537..1626196) 1 NC_011071.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: xcv:XCV1742 exopolysaccharide synthesis protein ExoD; Exopolysaccharide synthesis ExoD 1626196 6475304 Smal_1440 Stenotrophomonas maltophilia R551-3 Exopolysaccharide synthesis ExoD YP_002027828.1 1625537 R 391008 CDS YP_002027829.1 194365219 6475305 complement(1626180..1627499) 1 NC_011071.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: xac:XAC1709 hemolysin; hypothetical protein 1627499 6475305 Smal_1441 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027829.1 1626180 R 391008 CDS YP_002027830.1 194365220 6475306 1627777..1628403 1 NC_011071.1 KEGG: xac:XAC1710 hypothetical protein; hypothetical protein 1628403 6475306 Smal_1442 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027830.1 1627777 D 391008 CDS YP_002027831.1 194365221 6475307 1628417..1629538 1 NC_011071.1 PFAM: phosphate transporter; KEGG: xcb:XC_2540 transport protein; phosphate transporter 1629538 6475307 Smal_1443 Stenotrophomonas maltophilia R551-3 phosphate transporter YP_002027831.1 1628417 D 391008 CDS YP_002027832.1 194365222 6475308 complement(1629936..1631432) 1 NC_011071.1 PFAM: peptidase S10 serine carboxypeptidase; KEGG: xcb:XC_2538 carboxypeptidase-related protein; peptidase S10 serine carboxypeptidase 1631432 6475308 Smal_1444 Stenotrophomonas maltophilia R551-3 peptidase S10 serine carboxypeptidase YP_002027832.1 1629936 R 391008 CDS YP_002027833.1 194365223 6475309 complement(1631543..1632121) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3191 putative acetyltransferase; N-acetyltransferase GCN5 1632121 6475309 Smal_1445 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027833.1 1631543 R 391008 CDS YP_002027834.1 194365224 6475310 complement(1632356..1634245) 1 NC_011071.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1634245 6475310 Smal_1446 Stenotrophomonas maltophilia R551-3 DNA topoisomerase IV subunit B YP_002027834.1 1632356 R 391008 CDS YP_002027835.1 194365225 6475311 1634388..1634651 1 NC_011071.1 KEGG: xom:XOO_2818 hypothetical protein; hypothetical protein 1634651 6475311 Smal_1447 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027835.1 1634388 D 391008 CDS YP_002027836.1 194365226 6475312 1635052..1636716 1 NC_011071.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1636716 pyrG 6475312 pyrG Stenotrophomonas maltophilia R551-3 CTP synthetase YP_002027836.1 1635052 D 391008 CDS YP_002027837.1 194365227 6475313 1636806..1637636 1 NC_011071.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1637636 6475313 Smal_1449 Stenotrophomonas maltophilia R551-3 2-dehydro-3-deoxyphosphooctonate aldolase YP_002027837.1 1636806 D 391008 CDS YP_002027838.1 194365228 6475314 1637633..1637977 1 NC_011071.1 KEGG: xcb:XC_2532 hypothetical protein; hypothetical protein 1637977 6475314 Smal_1450 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027838.1 1637633 D 391008 CDS YP_002027839.1 194365229 6475315 1637977..1638306 1 NC_011071.1 KEGG: xcb:XC_2532 hypothetical protein; hypothetical protein 1638306 6475315 Smal_1451 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027839.1 1637977 D 391008 CDS YP_002027840.1 194365230 6475316 1638404..1639696 1 NC_011071.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1639696 eno 6475316 eno Stenotrophomonas maltophilia R551-3 phosphopyruvate hydratase YP_002027840.1 1638404 D 391008 CDS YP_002027841.1 194365231 6475317 1639701..1640054 1 NC_011071.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1640054 ftsB 6475317 ftsB Stenotrophomonas maltophilia R551-3 cell division protein FtsB YP_002027841.1 1639701 D 391008 CDS YP_002027842.1 194365232 6475318 1640051..1640749 1 NC_011071.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1640749 ispD 6475318 ispD Stenotrophomonas maltophilia R551-3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002027842.1 1640051 D 391008 CDS YP_002027843.1 194365233 6475319 1640784..1641281 1 NC_011071.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1641281 ispF 6475319 ispF Stenotrophomonas maltophilia R551-3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002027843.1 1640784 D 391008 CDS YP_002027844.1 194365234 6475320 1641278..1642309 1 NC_011071.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1642309 truD 6475320 truD Stenotrophomonas maltophilia R551-3 tRNA pseudouridine synthase D YP_002027844.1 1641278 D 391008 CDS YP_002027845.1 194365235 6475321 complement(1642379..1642918) 1 NC_011071.1 PFAM: Smr protein/MutS2; KEGG: xom:XOO_2809 hypothetical protein; Smr protein/MutS2 1642918 6475321 Smal_1457 Stenotrophomonas maltophilia R551-3 Smr protein/MutS2 YP_002027845.1 1642379 R 391008 CDS YP_002027846.1 194365236 6475322 1643128..1643907 1 NC_011071.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1643907 surE 6475322 surE Stenotrophomonas maltophilia R551-3 stationary phase survival protein SurE YP_002027846.1 1643128 D 391008 CDS YP_002027847.1 194365237 6475323 1643904..1644581 1 NC_011071.1 KEGG: xac:XAC1726 L-isoaspartate protein carboxylmethyltransferase type II; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1644581 6475323 Smal_1459 Stenotrophomonas maltophilia R551-3 protein-L-isoaspartate O-methyltransferase YP_002027847.1 1643904 D 391008 CDS YP_002027848.1 194365238 6475324 1644600..1645214 1 NC_011071.1 KEGG: xom:XOO_2806 hypothetical protein; hypothetical protein 1645214 6475324 Smal_1460 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027848.1 1644600 D 391008 CDS YP_002027849.1 194365239 6475325 1645211..1645996 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: xcv:XCV1761 outer membrane lipoprotein; peptidase M23 1645996 6475325 Smal_1461 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002027849.1 1645211 D 391008 CDS YP_002027850.1 194365240 6475326 complement(1646048..1647013) 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 1647013 6475326 Smal_1462 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002027850.1 1646048 R 391008 CDS YP_002027851.1 194365241 6475327 1647399..1647887 1 NC_011071.1 KEGG: kpn:KPN_00898 putative lipoprotein; hypothetical protein 1647887 6475327 Smal_1463 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027851.1 1647399 D 391008 CDS YP_002027852.1 194365242 6475328 complement(1647915..1648289) 1 NC_011071.1 PFAM: protein of unknown function DUF498; KEGG: xac:XAC1729 hypothetical protein; hypothetical protein 1648289 6475328 Smal_1464 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027852.1 1647915 R 391008 CDS YP_002027853.1 194365243 6475329 complement(1648303..1648608) 1 NC_011071.1 PFAM: protein of unknown function UPF0044; KEGG: xac:XAC1730 hypothetical protein; hypothetical protein 1648608 6475329 Smal_1465 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027853.1 1648303 R 391008 CDS YP_002027854.1 194365244 6475330 1648674..1649306 1 NC_011071.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: xac:XAC1731 cell division protein; ribosomal RNA methyltransferase RrmJ/FtsJ 1649306 6475330 Smal_1466 Stenotrophomonas maltophilia R551-3 ribosomal RNA methyltransferase RrmJ/FtsJ YP_002027854.1 1648674 D 391008 CDS YP_002027855.1 194365245 6475331 1649376..1651310 1 NC_011071.1 KEGG: xac:XAC1732 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1651310 6475331 Smal_1467 Stenotrophomonas maltophilia R551-3 ATP-dependent metalloprotease FtsH YP_002027855.1 1649376 D 391008 CDS YP_002027856.1 194365246 6475332 1651415..1651600 1 NC_011071.1 KEGG: mfa:Mfla_1716 hypothetical protein; hypothetical protein 1651600 6475332 Smal_1468 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027856.1 1651415 D 391008 CDS YP_002027857.1 194365247 6475333 1652147..1653043 1 NC_011071.1 KEGG: xcb:XC_2517 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1653043 6475333 Smal_1469 Stenotrophomonas maltophilia R551-3 dihydropteroate synthase YP_002027857.1 1652147 D 391008 CDS YP_002027858.1 194365248 6475334 1653043..1653996 1 NC_011071.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1653996 miaA 6475334 miaA Stenotrophomonas maltophilia R551-3 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002027858.1 1653043 D 391008 CDS YP_002027859.1 194365249 6475335 1654093..1654368 1 NC_011071.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1654368 hfq 6475335 hfq Stenotrophomonas maltophilia R551-3 RNA-binding protein Hfq YP_002027859.1 1654093 D 391008 CDS YP_002027860.1 194365250 6475336 1654383..1655693 1 NC_011071.1 TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: xcv:XCV1769 GTP-binding protein; GTP-binding proten HflX 1655693 6475336 Smal_1472 Stenotrophomonas maltophilia R551-3 GTP-binding proten HflX YP_002027860.1 1654383 D 391008 CDS YP_002027861.1 194365251 6475337 1655791..1656291 1 NC_011071.1 PFAM: CinA domain protein; KEGG: xac:XAC1737 hypothetical protein; CinA domain-containing protein 1656291 6475337 Smal_1473 Stenotrophomonas maltophilia R551-3 CinA domain-containing protein YP_002027861.1 1655791 D 391008 CDS YP_002027862.1 194365252 6475338 1656323..1658008 1 NC_011071.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: xcb:XC_2511 ubiquinone biosynthesis protein; 2-polyprenylphenol 6-hydroxylase 1658008 6475338 Smal_1474 Stenotrophomonas maltophilia R551-3 2-polyprenylphenol 6-hydroxylase YP_002027862.1 1656323 D 391008 CDS YP_002027863.1 194365253 6475339 1658228..1658863 1 NC_011071.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1658863 6475339 Smal_1475 Stenotrophomonas maltophilia R551-3 LexA repressor YP_002027863.1 1658228 D 391008 CDS YP_002027864.1 194365254 6475340 1659068..1660105 1 NC_011071.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1660105 recA 6475340 recA Stenotrophomonas maltophilia R551-3 recombinase A YP_002027864.1 1659068 D 391008 CDS YP_002027865.1 194365255 6475341 1660216..1660707 1 NC_011071.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1660707 recX 6475341 recX Stenotrophomonas maltophilia R551-3 recombination regulator RecX YP_002027865.1 1660216 D 391008 CDS YP_002027866.1 194365256 6475342 1660817..1663465 1 NC_011071.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1663465 alaS 6475342 alaS Stenotrophomonas maltophilia R551-3 alanyl-tRNA synthetase YP_002027866.1 1660817 D 391008 CDS YP_002027867.1 194365257 6475343 1663613..1663816 1 NC_011071.1 PFAM: carbon storage regulator; KEGG: xom:XOO_2790 carbon storage regulator; carbon starvation protein CstA 1663816 6475343 Smal_1479 Stenotrophomonas maltophilia R551-3 carbon starvation protein CstA YP_002027867.1 1663613 D 391008 CDS YP_002027868.1 194365258 6475345 complement(1664108..1666438) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: prw:PsycPRwf_2339 TonB-dependent receptor; TonB-dependent receptor 1666438 6475345 Smal_1480 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027868.1 1664108 R 391008 CDS YP_002027869.1 194365259 6475346 1666578..1667516 1 NC_011071.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator; AraC family transcriptional regulator 1667516 6475346 Smal_1481 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027869.1 1666578 D 391008 CDS YP_002027870.1 194365260 6475347 1667628..1669799 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor; TonB-dependent siderophore receptor 1669799 6475347 Smal_1482 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027870.1 1667628 D 391008 CDS YP_002027871.1 194365261 6475348 complement(1669817..1670923) 1 NC_011071.1 PFAM: protein of unknown function DUF218; KEGG: ava:Ava_0399 protein of unknown function DUF218; hypothetical protein 1670923 6475348 Smal_1483 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027871.1 1669817 R 391008 CDS YP_002027872.1 194365262 6475349 complement(1670923..1673418) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0316 TonB-dependent receptor; TonB-dependent receptor plug 1673418 6475349 Smal_1484 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002027872.1 1670923 R 391008 CDS YP_002027873.1 194365263 6475350 complement(1673505..1674662) 1 NC_011071.1 PFAM: ROK family protein; KEGG: yps:YPTB2018 putative transcriptional regulatory protein; ROK family protein 1674662 6475350 Smal_1485 Stenotrophomonas maltophilia R551-3 ROK family protein YP_002027873.1 1673505 R 391008 CDS YP_002027874.1 194365264 6475351 complement(1674659..1676017) 1 NC_011071.1 KEGG: xom:XOO_3493 hypothetical protein; hypothetical protein 1676017 6475351 Smal_1486 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027874.1 1674659 R 391008 CDS YP_002027875.1 194365265 6475352 1676078..1676560 1 NC_011071.1 KEGG: xcv:XCV0097 putative secreted protein; hypothetical protein 1676560 6475352 Smal_1487 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027875.1 1676078 D 391008 CDS YP_002027876.1 194365266 6475353 complement(1676612..1679284) 1 NC_011071.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 1679284 6475353 Smal_1488 Stenotrophomonas maltophilia R551-3 2-oxoacid dehydrogenase subunit E1 YP_002027876.1 1676612 R 391008 CDS YP_002027877.1 194365267 6475354 complement(1679529..1679828) 1 NC_011071.1 KEGG: pde:Pden_3453 hypothetical protein; hypothetical protein 1679828 6475354 Smal_1489 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027877.1 1679529 R 391008 CDS YP_002027878.1 194365268 6475355 1679967..1680482 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1680482 6475355 Smal_1490 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002027878.1 1679967 D 391008 CDS YP_002027879.1 194365269 6475356 1680479..1681501 1 NC_011071.1 PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor; anti-FecI sigma factor FecR 1681501 6475356 Smal_1491 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002027879.1 1680479 D 391008 CDS YP_002027880.1 194365270 6475357 1681643..1684576 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1341 TonB-dependent outer membrane receptor; TonB-dependent receptor 1684576 6475357 Smal_1492 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027880.1 1681643 D 391008 CDS YP_002027881.1 194365271 6475358 1684587..1686182 1 NC_011071.1 KEGG: gox:GOX0675 alkaline phosphatase; alkaline phosphatase 1686182 6475358 Smal_1493 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002027881.1 1684587 D 391008 CDS YP_002027882.1 194365272 6475359 complement(1686283..1688391) 1 NC_011071.1 KEGG: xcb:XC_1121 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phosphocholine-specific phospholipase C 1688391 6475359 Smal_1494 Stenotrophomonas maltophilia R551-3 phosphocholine-specific phospholipase C YP_002027882.1 1686283 R 391008 CDS YP_002027883.1 194365273 6475360 complement(1688400..1690778) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1122 TonB-dependent receptor; TonB-dependent receptor 1690778 6475360 Smal_1495 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027883.1 1688400 R 391008 CDS YP_002027884.1 194365274 6475361 complement(1690897..1691823) 1 NC_011071.1 KEGG: oan:Oant_0690 cytochrome c class I; cytochrome c class I 1691823 6475361 Smal_1496 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002027884.1 1690897 R 391008 CDS YP_002027885.1 194365275 6475362 complement(1691820..1693166) 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: oan:Oant_0689 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase 1693166 6475362 Smal_1497 Stenotrophomonas maltophilia R551-3 gluconate 2-dehydrogenase YP_002027885.1 1691820 R 391008 CDS YP_002027886.1 194365276 6475363 1693352..1694470 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_4003 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 1694470 6475363 Smal_1498 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002027886.1 1693352 D 391008 CDS YP_002027887.1 194365277 6475364 complement(1694552..1695691) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4038 transporter, putative; major facilitator superfamily protein 1695691 6475364 Smal_1499 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027887.1 1694552 R 391008 CDS YP_002027888.1 194365278 6475365 1695876..1696571 1 NC_011071.1 KEGG: pap:PSPA7_2469 esterase/lipase/thioesterase domain-containing protein; esterase/lipase/thioesterase domain-containing protein 1696571 6475365 Smal_1500 Stenotrophomonas maltophilia R551-3 esterase/lipase/thioesterase domain-containing protein YP_002027888.1 1695876 D 391008 CDS YP_002027889.1 194365279 6475366 1696719..1698917 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_33680 ferripyoverdine receptor; TonB-dependent siderophore receptor 1698917 6475366 Smal_1501 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002027889.1 1696719 D 391008 CDS YP_002027890.1 194365280 6475367 complement(1699034..1699735) 1 NC_011071.1 PFAM: Pirin domain protein; KEGG: xcv:XCV1780 putative pirin-related protein; Pirin domain-containing protein 1699735 6475367 Smal_1502 Stenotrophomonas maltophilia R551-3 Pirin domain-containing protein YP_002027890.1 1699034 R 391008 CDS YP_002027891.1 194365281 6475368 1699876..1700796 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xom:XOO_2783 transcriptional regulator; LysR family transcriptional regulator 1700796 6475368 Smal_1503 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027891.1 1699876 D 391008 CDS YP_002027892.1 194365282 6475372 complement(1701810..1702736) 1 NC_011071.1 KEGG: xcv:XCV1783 hypothetical protein; hypothetical protein 1702736 6475372 Smal_1504 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027892.1 1701810 R 391008 CDS YP_002027893.1 194365283 6475373 complement(1702733..1703542) 1 NC_011071.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1703542 6475373 Smal_1505 Stenotrophomonas maltophilia R551-3 phosphomethylpyrimidine kinase YP_002027893.1 1702733 R 391008 CDS YP_002027894.1 194365284 6475374 complement(1703649..1704317) 1 NC_011071.1 PFAM: protein of unknown function DUF1275; KEGG: xcv:XCV1785 hypothetical protein; hypothetical protein 1704317 6475374 Smal_1506 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027894.1 1703649 R 391008 CDS YP_002027895.1 194365285 6475375 complement(1704330..1704836) 1 NC_011071.1 KEGG: xcv:XCV1786 putative secreted protein; hypothetical protein 1704836 6475375 Smal_1507 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027895.1 1704330 R 391008 CDS YP_002027896.1 194365286 6475376 complement(1704833..1706233) 1 NC_011071.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: xac:XAC1756 hypothetical protein; PhoH family protein 1706233 6475376 Smal_1508 Stenotrophomonas maltophilia R551-3 PhoH family protein YP_002027896.1 1704833 R 391008 CDS YP_002027897.1 194365287 6475377 complement(1706318..1706797) 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xom:XOO_2777 bacterioferritin comigratory protein; alkyl hydroperoxide reductase 1706797 6475377 Smal_1509 Stenotrophomonas maltophilia R551-3 alkyl hydroperoxide reductase YP_002027897.1 1706318 R 391008 CDS YP_002027898.1 194365288 6475378 complement(1706876..1707436) 1 NC_011071.1 PFAM: amino acid-binding ACT domain protein; KEGG: xcb:XC_2494 glycine cleavage system transcriptional repressor; amino acid-binding ACT domain-containing protein 1707436 6475378 Smal_1510 Stenotrophomonas maltophilia R551-3 amino acid-binding ACT domain-containing protein YP_002027898.1 1706876 R 391008 CDS YP_002027899.1 194365289 6475379 1707601..1708494 1 NC_011071.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1708494 6475379 Smal_1511 Stenotrophomonas maltophilia R551-3 dihydrodipicolinate synthase YP_002027899.1 1707601 D 391008 CDS YP_002027900.1 194365290 6475380 1708527..1709042 1 NC_011071.1 KEGG: xac:XAC1761 hypothetical protein; hypothetical protein 1709042 6475380 Smal_1512 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027900.1 1708527 D 391008 CDS YP_002027901.1 194365291 6475381 complement(1709207..1709530) 1 NC_011071.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: xcb:XC_2491 ferredoxin; 4Fe-4S ferredoxin 1709530 6475381 Smal_1513 Stenotrophomonas maltophilia R551-3 4Fe-4S ferredoxin YP_002027901.1 1709207 R 391008 CDS YP_002027902.1 194365292 6475382 1709722..1711146 1 NC_011071.1 KEGG: xcv:XCV1809 sugar porter family protein; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 1711146 6475382 Smal_1514 Stenotrophomonas maltophilia R551-3 sugar transporter YP_002027902.1 1709722 D 391008 CDS YP_002027903.1 194365293 6475384 1711792..1713177 1 NC_011071.1 KEGG: xcv:XCV1814 polynucleotide adenylyltransferase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 1713177 6475384 Smal_1515 Stenotrophomonas maltophilia R551-3 poly(A) polymerase YP_002027903.1 1711792 D 391008 CDS YP_002027904.1 194365294 6475385 1713181..1713666 1 NC_011071.1 KEGG: xcb:XC_2469 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1713666 6475385 Smal_1516 Stenotrophomonas maltophilia R551-3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002027904.1 1713181 D 391008 CDS YP_002027905.1 194365295 6475386 1713701..1714516 1 NC_011071.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1714516 panB 6475386 panB Stenotrophomonas maltophilia R551-3 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002027905.1 1713701 D 391008 CDS YP_002027906.1 194365296 6475387 1714513..1715352 1 NC_011071.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1715352 panC 6475387 panC Stenotrophomonas maltophilia R551-3 pantoate--beta-alanine ligase YP_002027906.1 1714513 D 391008 CDS YP_002027907.1 194365297 6475388 1715424..1715921 1 NC_011071.1 hypothetical protein 1715921 6475388 Smal_1519 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027907.1 1715424 D 391008 CDS YP_002027908.1 194365298 6475389 1716009..1716389 1 NC_011071.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1716389 6475389 Smal_1520 Stenotrophomonas maltophilia R551-3 aspartate alpha-decarboxylase YP_002027908.1 1716009 D 391008 CDS YP_002027909.1 194365299 6475390 1716386..1717900 1 NC_011071.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1717900 pgi 6475390 pgi Stenotrophomonas maltophilia R551-3 glucose-6-phosphate isomerase YP_002027909.1 1716386 D 391008 CDS YP_002027910.1 194365300 6475391 complement(1718010..1718579) 1 NC_011071.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: xac:XAC1797 two-component system regulatory protein; two component Fis family transcriptional regulator 1718579 6475391 Smal_1522 Stenotrophomonas maltophilia R551-3 two component Fis family transcriptional regulator YP_002027910.1 1718010 R 391008 CDS YP_002027911.1 194365301 6475392 complement(1718576..1719802) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_2456 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 1719802 6475392 Smal_1523 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002027911.1 1718576 R 391008 CDS YP_002027912.1 194365302 6475393 1719917..1721182 1 NC_011071.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1721182 ispG 6475393 ispG Stenotrophomonas maltophilia R551-3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002027912.1 1719917 D 391008 CDS YP_002027913.1 194365303 6475394 1721163..1721912 1 NC_011071.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: xcv:XCV1830 putative membrane-associated phosphoesterase; PA-phosphatase-like phosphoesterase 1721912 6475394 Smal_1525 Stenotrophomonas maltophilia R551-3 PA-phosphatase-like phosphoesterase YP_002027913.1 1721163 D 391008 CDS YP_002027914.1 194365304 6475395 1722113..1722760 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: xcb:XC_2096 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator 1722760 6475395 Smal_1526 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002027914.1 1722113 D 391008 CDS YP_002027915.1 194365305 6475396 complement(1723093..1723752) 1 NC_011071.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1723752 6475396 Smal_1527 Stenotrophomonas maltophilia R551-3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002027915.1 1723093 R 391008 CDS YP_002027916.1 194365306 6475397 complement(1723989..1725905) 1 NC_011071.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1725905 6475397 Smal_1528 Stenotrophomonas maltophilia R551-3 phosphogluconate dehydratase YP_002027916.1 1723989 R 391008 CDS YP_002027917.1 194365307 6475398 complement(1725964..1726689) 1 NC_011071.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: xcb:XC_1975 6-phosphogluconolactonase; 6-phosphogluconolactonase 1726689 6475398 Smal_1529 Stenotrophomonas maltophilia R551-3 6-phosphogluconolactonase YP_002027917.1 1725964 R 391008 CDS YP_002027918.1 194365308 6475399 complement(1726686..1727693) 1 NC_011071.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1727693 glk 6475399 glk Stenotrophomonas maltophilia R551-3 glucokinase YP_002027918.1 1726686 R 391008 CDS YP_002027919.1 194365309 6475400 complement(1727690..1729126) 1 NC_011071.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1729126 6475400 Smal_1531 Stenotrophomonas maltophilia R551-3 glucose-6-phosphate 1-dehydrogenase YP_002027919.1 1727690 R 391008 CDS YP_002027920.1 194365310 6475401 1729479..1730561 1 NC_011071.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: xcb:XC_1978 sugar ABC transporter ATP-binding protein; ABC transporter-like protein 1730561 6475401 Smal_1532 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027920.1 1729479 D 391008 CDS YP_002027921.1 194365311 6475402 complement(1730666..1731541) 1 NC_011071.1 TIGRFAM: folate-binding protein YgfZ; PFAM: Glycine cleavage T-protein barrel; KEGG: xom:XOO_2189 hypothetical protein; folate-binding protein YgfZ 1731541 6475402 Smal_1533 Stenotrophomonas maltophilia R551-3 folate-binding protein YgfZ YP_002027921.1 1730666 R 391008 CDS YP_002027922.1 194365312 6475403 1731581..1731751 1 NC_011071.1 PFAM: protein of unknown function DUF1674; KEGG: xcb:XC_1979 hypothetical protein; hypothetical protein 1731751 6475403 Smal_1534 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027922.1 1731581 D 391008 CDS YP_002027923.1 194365313 6475404 1731808..1732200 1 NC_011071.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: xfn:XfasM23_0342 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 1732200 6475404 Smal_1535 Stenotrophomonas maltophilia R551-3 succinate dehydrogenase, cytochrome b556 subunit YP_002027923.1 1731808 D 391008 CDS YP_002027924.1 194365314 6475405 1732197..1732583 1 NC_011071.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: xac:XAC2076 succinate dehydrogenase membrane anchor subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 1732583 6475405 Smal_1536 Stenotrophomonas maltophilia R551-3 succinate dehydrogenase, hydrophobic membrane anchor protein YP_002027924.1 1732197 D 391008 CDS YP_002027925.1 194365315 6475406 1732615..1734405 1 NC_011071.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1734405 sdhA 6475406 sdhA Stenotrophomonas maltophilia R551-3 succinate dehydrogenase flavoprotein subunit YP_002027925.1 1732615 D 391008 CDS YP_002027926.1 194365316 6475407 1734472..1735257 1 NC_011071.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1735257 sdhB 6475407 sdhB Stenotrophomonas maltophilia R551-3 succinate dehydrogenase iron-sulfur subunit YP_002027926.1 1734472 D 391008 CDS YP_002027927.1 194365317 6475408 1735356..1735604 1 NC_011071.1 PFAM: protein of unknown function DUF339; KEGG: xcb:XC_1986 hypothetical protein; hypothetical protein 1735604 6475408 Smal_1539 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027927.1 1735356 D 391008 CDS YP_002027928.1 194365318 6475409 1735555..1736004 1 NC_011071.1 KEGG: xcv:XCV2247 hypothetical protein; hypothetical protein 1736004 6475409 Smal_1540 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027928.1 1735555 D 391008 CDS YP_002027929.1 194365319 6475410 1736028..1737269 1 NC_011071.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: xcb:XC_1988 lipoprotein releasing system transmembrane protein; lipoprotein releasing system transmembrane protein LolC/E family 1737269 6475410 Smal_1541 Stenotrophomonas maltophilia R551-3 lipoprotein releasing system transmembrane protein LolC/E family YP_002027929.1 1736028 D 391008 CDS YP_002027930.1 194365320 6475411 1737262..1737975 1 NC_011071.1 KEGG: xom:XOO_2181 ABC transporter ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1737975 6475411 Smal_1542 Stenotrophomonas maltophilia R551-3 lipoprotein releasing system, ATP-binding protein YP_002027930.1 1737262 D 391008 CDS YP_002027931.1 194365321 6475412 1738164..1738613 1 NC_011071.1 KEGG: xcb:XC_1692 hypothetical protein; hypothetical protein 1738613 6475412 Smal_1543 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027931.1 1738164 D 391008 CDS YP_002027932.1 194365322 6475413 complement(1738688..1738957) 1 NC_011071.1 PFAM: Fe(II) trafficking protein YggX; KEGG: xac:XAC2554 hypothetical protein; hypothetical protein 1738957 6475413 Smal_1544 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027932.1 1738688 R 391008 CDS YP_002027933.1 194365323 6475414 complement(1738963..1740087) 1 NC_011071.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: xcv:XCV2752 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 1740087 6475414 Smal_1545 Stenotrophomonas maltophilia R551-3 A/G-specific adenine glycosylase YP_002027933.1 1738963 R 391008 CDS YP_002027934.1 194365324 6475415 complement(1740171..1741496) 1 NC_011071.1 KEGG: xcb:XC_1695 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1741496 6475415 Smal_1546 Stenotrophomonas maltophilia R551-3 signal recognition particle-docking protein FtsY YP_002027934.1 1740171 R 391008 CDS YP_002027935.1 194365325 6475416 1741626..1741925 1 NC_011071.1 KEGG: xcv:XCV2735 hypothetical protein; hypothetical protein 1741925 6475416 Smal_1547 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027935.1 1741626 D 391008 CDS YP_002027936.1 194365326 6475417 complement(1742276..1744168) 1 NC_011071.1 molecular chaperone; heat shock protein 90 1744168 6475417 Smal_1548 Stenotrophomonas maltophilia R551-3 heat shock protein 90 YP_002027936.1 1742276 R 391008 CDS YP_002027937.1 194365327 6475418 1744811..1745389 1 NC_011071.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: xcv:XCV2710 putative methyltransferase; methyltransferase 1745389 6475418 Smal_1549 Stenotrophomonas maltophilia R551-3 methyltransferase YP_002027937.1 1744811 D 391008 CDS YP_002027938.1 194365328 6475419 1745416..1745925 1 NC_011071.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1745925 coaD 6475419 coaD Stenotrophomonas maltophilia R551-3 phosphopantetheine adenylyltransferase YP_002027938.1 1745416 D 391008 CDS YP_002027939.1 194365329 6475420 1745987..1746478 1 NC_011071.1 KEGG: xcv:XCV2708 putative secreted protein; hypothetical protein 1746478 6475420 Smal_1551 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027939.1 1745987 D 391008 CDS YP_002027940.1 194365330 6475421 1746611..1746892 1 NC_011071.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: xac:XAC2524 ferredoxin; 4Fe-4S ferredoxin 1746892 6475421 Smal_1552 Stenotrophomonas maltophilia R551-3 4Fe-4S ferredoxin YP_002027940.1 1746611 D 391008 CDS YP_002027941.1 194365331 6475422 1746889..1748619 1 NC_011071.1 KEGG: xcv:XCV2706 gamma-glutamyltranspeptidase precursor; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1748619 6475422 Smal_1553 Stenotrophomonas maltophilia R551-3 gamma-glutamyltransferase YP_002027941.1 1746889 D 391008 CDS YP_002027942.1 194365332 6475423 1748741..1749628 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: pap:PSPA7_0898 hypothetical protein; beta-lactamase domain-containing protein 1749628 6475423 Smal_1554 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002027942.1 1748741 D 391008 CDS YP_002027943.1 194365333 6475424 complement(1749725..1750018) 1 NC_011071.1 PFAM: PsiF repeat protein; KEGG: pfo:PflO1_0574 PsiF; PsiF repeat-containing protein 1750018 6475424 Smal_1555 Stenotrophomonas maltophilia R551-3 PsiF repeat-containing protein YP_002027943.1 1749725 R 391008 CDS YP_002027944.1 194365334 6475425 complement(1750162..1750794) 1 NC_011071.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1750794 upp 6475425 upp Stenotrophomonas maltophilia R551-3 uracil phosphoribosyltransferase YP_002027944.1 1750162 R 391008 CDS YP_002027945.1 194365335 6475426 1750964..1753525 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV2702 TonB-dependent outer membrane receptor; TonB-dependent receptor 1753525 6475426 Smal_1557 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002027945.1 1750964 D 391008 CDS YP_002027946.1 194365336 6475427 1753525..1754640 1 NC_011071.1 PFAM: NHL repeat containing protein; KEGG: xcb:XC_1730 putative phytase precursor; NHL repeat containing protein 1754640 6475427 Smal_1558 Stenotrophomonas maltophilia R551-3 NHL repeat containing protein YP_002027946.1 1753525 D 391008 CDS YP_002027947.1 194365337 6475428 1754637..1756004 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: xac:XAC2518 hypothetical protein; metallophosphoesterase 1756004 6475428 Smal_1559 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002027947.1 1754637 D 391008 CDS YP_002027948.1 194365338 6475429 1756016..1756627 1 NC_011071.1 PFAM: Inorganic pyrophosphatase; KEGG: oan:Oant_1233 inorganic diphosphatase; inorganic diphosphatase 1756627 6475429 Smal_1560 Stenotrophomonas maltophilia R551-3 inorganic diphosphatase YP_002027948.1 1756016 D 391008 CDS YP_002027949.1 194365339 6475430 complement(1756647..1757231) 1 NC_011071.1 KEGG: pap:PSPA7_0464 hypothetical protein; hypothetical protein 1757231 6475430 Smal_1561 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027949.1 1756647 R 391008 CDS YP_002027950.1 194365340 6475431 1757341..1758756 1 NC_011071.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: xcb:XC_2803 photolyase-like protein; deoxyribodipyrimidine photo-lyase 1758756 6475431 Smal_1562 Stenotrophomonas maltophilia R551-3 deoxyribodipyrimidine photo-lyase YP_002027950.1 1757341 D 391008 CDS YP_002027951.1 194365341 6475432 1758896..1759591 1 NC_011071.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: xcb:XC_2802 outer membrane protein; OmpA/MotB domain-containing protein 1759591 6475432 Smal_1563 Stenotrophomonas maltophilia R551-3 OmpA/MotB domain-containing protein YP_002027951.1 1758896 D 391008 CDS YP_002027952.1 194365342 6475433 complement(1759834..1760865) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV1538 transcriptional regulator, LysR family; LysR family transcriptional regulator 1760865 6475433 Smal_1564 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027952.1 1759834 R 391008 CDS YP_002027953.1 194365343 6475434 1761013..1761240 1 NC_011071.1 hypothetical protein 1761240 6475434 Smal_1565 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027953.1 1761013 D 391008 CDS YP_002027954.1 194365344 6475435 1761237..1762007 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_2800 aklaviketone reductase; short-chain dehydrogenase/reductase SDR 1762007 6475435 Smal_1566 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002027954.1 1761237 D 391008 CDS YP_002027955.1 194365345 6475436 1762099..1763325 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_2799 RND multidrug efflux membrane fusion protein; RND family efflux transporter MFP subunit 1763325 6475436 Smal_1567 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002027955.1 1762099 D 391008 CDS YP_002027956.1 194365346 6475437 1763438..1766608 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xac:XAC1483 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1766608 6475437 Smal_1568 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002027956.1 1763438 D 391008 CDS YP_002027957.1 194365347 6475438 1766673..1767410 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_2797 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1767410 6475438 Smal_1569 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002027957.1 1766673 D 391008 CDS YP_002027958.1 194365348 6475439 1767404..1768825 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xcv:XCV1543 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1768825 6475439 Smal_1570 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002027958.1 1767404 D 391008 CDS YP_002027959.1 194365349 6475440 1768991..1769254 1 NC_011071.1 hypothetical protein 1769254 6475440 Smal_1571 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027959.1 1768991 D 391008 CDS YP_002027960.1 194365350 6475441 complement(1769274..1770128) 1 NC_011071.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_0717 hypothetical protein; endonuclease/exonuclease/phosphatase 1770128 6475441 Smal_1572 Stenotrophomonas maltophilia R551-3 endonuclease/exonuclease/phosphatase YP_002027960.1 1769274 R 391008 CDS YP_002027961.1 194365351 6475442 1770537..1771763 1 NC_011071.1 PFAM: cytochrome P450; KEGG: sen:SACE_2802 putative cytochrome P450 hydroxylase; cytochrome P450 1771763 6475442 Smal_1573 Stenotrophomonas maltophilia R551-3 cytochrome P450 YP_002027961.1 1770537 D 391008 CDS YP_002027962.1 194365352 6475443 complement(1771835..1772071) 1 NC_011071.1 hypothetical protein 1772071 6475443 Smal_1574 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027962.1 1771835 R 391008 CDS YP_002027963.1 194365353 6475444 complement(1772159..1772863) 1 NC_011071.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2869 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 1772863 6475444 Smal_1575 Stenotrophomonas maltophilia R551-3 LuxR family transcriptional regulator YP_002027963.1 1772159 R 391008 CDS YP_002027964.1 194365354 6475445 complement(1772869..1773741) 1 NC_011071.1 Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 1773741 6475445 Smal_1576 Stenotrophomonas maltophilia R551-3 chaperone protein HchA YP_002027964.1 1772869 R 391008 CDS YP_002027965.1 194365355 6475446 complement(1773847..1774830) 1 NC_011071.1 hypothetical protein 1774830 6475446 Smal_1577 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027965.1 1773847 R 391008 CDS YP_002027966.1 194365356 6475447 complement(1774893..1776911) 1 NC_011071.1 PFAM: PGAP1 family protein; KEGG: pla:Plav_3441 hypothetical protein; PGAP1 family protein 1776911 6475447 Smal_1578 Stenotrophomonas maltophilia R551-3 PGAP1 family protein YP_002027966.1 1774893 R 391008 CDS YP_002027967.1 194365357 6475448 1777065..1777526 1 NC_011071.1 KEGG: xom:XOO_4078 hypothetical protein; hypothetical protein 1777526 6475448 Smal_1579 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027967.1 1777065 D 391008 CDS YP_002027968.1 194365358 6475449 complement(1777537..1778019) 1 NC_011071.1 KEGG: vei:Veis_1423 hypothetical protein; hypothetical protein 1778019 6475449 Smal_1580 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027968.1 1777537 R 391008 CDS YP_002027969.1 194365359 6475450 complement(1778047..1778493) 1 NC_011071.1 KEGG: yen:YE2300 hypothetical protein; hypothetical protein 1778493 6475450 Smal_1581 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027969.1 1778047 R 391008 CDS YP_002027970.1 194365360 6475451 complement(1778680..1780185) 1 NC_011071.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: xcv:XCV0960 extracellular protease precursor; peptidase S8/S53 subtilisin kexin sedolisin 1780185 6475451 Smal_1582 Stenotrophomonas maltophilia R551-3 peptidase S8/S53 subtilisin kexin sedolisin YP_002027970.1 1778680 R 391008 CDS YP_002027971.1 194365361 6475452 complement(1780557..1781801) 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: xfa:XF1216 colicin V secretion protein; secretion protein HlyD family protein 1781801 6475452 Smal_1583 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002027971.1 1780557 R 391008 CDS YP_002027972.1 194365362 6475453 complement(1781798..1783864) 1 NC_011071.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: xom:XOO_1681 colicin V secretion ABC transporter ATP-binding protein; ABC transporter-like protein 1783864 6475453 Smal_1584 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002027972.1 1781798 R 391008 CDS YP_002027973.1 194365363 6475454 complement(1784079..1784705) 1 NC_011071.1 PFAM: Abortive infection protein; KEGG: ypy:YPK_0793 abortive infection protein; abortive infection protein 1784705 6475454 Smal_1585 Stenotrophomonas maltophilia R551-3 abortive infection protein YP_002027973.1 1784079 R 391008 CDS YP_002027974.1 194365364 6475455 complement(1784769..1784963) 1 NC_011071.1 hypothetical protein 1784963 6475455 Smal_1586 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027974.1 1784769 R 391008 CDS YP_002027975.1 194365365 6475457 1786141..1787160 1 NC_011071.1 hypothetical protein 1787160 6475457 Smal_1587 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027975.1 1786141 D 391008 CDS YP_002027976.1 194365366 6475458 1787236..1787667 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2792 probable acetyltransferase; N-acetyltransferase GCN5 1787667 6475458 Smal_1588 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002027976.1 1787236 D 391008 CDS YP_002027977.1 194365367 6475459 1787808..1788380 1 NC_011071.1 hypothetical protein 1788380 6475459 Smal_1589 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027977.1 1787808 D 391008 CDS YP_002027978.1 194365368 6475460 complement(1788506..1789009) 1 NC_011071.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1789009 smpB 6475460 smpB Stenotrophomonas maltophilia R551-3 SsrA-binding protein YP_002027978.1 1788506 R 391008 CDS YP_002027979.1 194365369 6475461 1789067..1789492 1 NC_011071.1 PFAM: cyclase/dehydrase; KEGG: xcv:XCV1557 hypothetical protein; cyclase/dehydrase 1789492 6475461 Smal_1591 Stenotrophomonas maltophilia R551-3 cyclase/dehydrase YP_002027979.1 1789067 D 391008 CDS YP_002027980.1 194365370 6475462 1789496..1789753 1 NC_011071.1 PFAM: protein of unknown function UPF0125; KEGG: xcb:XC_2769 hypothetical protein; hypothetical protein 1789753 6475462 Smal_1592 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027980.1 1789496 D 391008 CDS YP_002027981.1 194365371 6475463 complement(1789790..1790182) 1 NC_011071.1 PFAM: SmpA/OmlA domain protein; KEGG: xac:XAC1516 outer membrane protein; SmpA/OmlA domain-containing protein 1790182 6475463 Smal_1593 Stenotrophomonas maltophilia R551-3 SmpA/OmlA domain-containing protein YP_002027981.1 1789790 R 391008 CDS YP_002027982.1 194365372 6475464 1790286..1790693 1 NC_011071.1 PFAM: ferric-uptake regulator; KEGG: xac:XAC1517 ferric uptake regulator; Fur family ferric uptake regulator 1790693 6475464 Smal_1594 Stenotrophomonas maltophilia R551-3 Fur family ferric uptake regulator YP_002027982.1 1790286 D 391008 CDS YP_002027983.1 194365373 6475465 complement(1790810..1792066) 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pau:PA14_23690 putative secreted protein; G-D-S-L family lipolytic protein 1792066 6475465 Smal_1595 Stenotrophomonas maltophilia R551-3 G-D-S-L family lipolytic protein YP_002027983.1 1790810 R 391008 CDS YP_002027984.1 194365374 6475466 1792164..1793081 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA3124 probable transcriptional regulator; LysR family transcriptional regulator 1793081 6475466 Smal_1596 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002027984.1 1792164 D 391008 CDS YP_002027985.1 194365375 6475467 complement(1793206..1794867) 1 NC_011071.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: xcc:XCC1471 recombination protein N; DNA repair protein RecN 1794867 6475467 Smal_1597 Stenotrophomonas maltophilia R551-3 DNA repair protein RecN YP_002027985.1 1793206 R 391008 CDS YP_002027986.1 194365376 6475468 1794982..1796046 1 NC_011071.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1796046 hrcA 6475468 hrcA Stenotrophomonas maltophilia R551-3 heat-inducible transcription repressor YP_002027986.1 1794982 D 391008 CDS YP_002027987.1 194365377 6475469 1796110..1796625 1 NC_011071.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1796625 6475469 Smal_1599 Stenotrophomonas maltophilia R551-3 heat shock protein GrpE YP_002027987.1 1796110 D 391008 CDS YP_002027988.1 194365378 6475470 1796806..1798731 1 NC_011071.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1798731 dnaK 6475470 dnaK Stenotrophomonas maltophilia R551-3 molecular chaperone DnaK YP_002027988.1 1796806 D 391008 CDS YP_002027989.1 194365379 6475471 1798886..1800016 1 NC_011071.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1800016 6475471 Smal_1601 Stenotrophomonas maltophilia R551-3 chaperone protein DnaJ YP_002027989.1 1798886 D 391008 CDS YP_002027990.1 194365380 6475472 complement(1800109..1800906) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psa:PST_1310 AraC protein; AraC family transcriptional regulator 1800906 6475472 Smal_1602 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002027990.1 1800109 R 391008 CDS YP_002027991.1 194365381 6475473 1800979..1802178 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_1146 major facilitator superfamily MFS_1; major facilitator superfamily protein 1802178 6475473 Smal_1603 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002027991.1 1800979 D 391008 CDS YP_002027992.1 194365382 6475474 1802823..1803731 1 NC_011071.1 TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: xcv:XCV1566 pyridoxine kinase; pyridoxal kinase 1803731 6475474 Smal_1604 Stenotrophomonas maltophilia R551-3 pyridoxal kinase YP_002027992.1 1802823 D 391008 CDS YP_002027993.1 194365383 6475475 1803728..1804852 1 NC_011071.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1804852 6475475 Smal_1605 Stenotrophomonas maltophilia R551-3 prephenate dehydrogenase YP_002027993.1 1803728 D 391008 CDS YP_002027994.1 194365384 6475476 complement(1805084..1805278) 1 NC_011071.1 KEGG: xcb:XC_2759 hypothetical protein; hypothetical protein 1805278 6475476 Smal_1606 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027994.1 1805084 R 391008 CDS YP_002027995.1 194365385 6475477 complement(1805350..1807122) 1 NC_011071.1 KEGG: xcb:XC_2754 ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter family, fused ATPase and inner membrane subunits 1807122 6475477 Smal_1607 Stenotrophomonas maltophilia R551-3 lipid A ABC exporter family, fused ATPase and inner membrane subunits YP_002027995.1 1805350 R 391008 CDS YP_002027996.1 194365386 6475478 complement(1807115..1807720) 1 NC_011071.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: xcv:XCV1574 hypothetical protein; hypothetical protein 1807720 6475478 Smal_1608 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027996.1 1807115 R 391008 CDS YP_002027997.1 194365387 6475479 complement(1807752..1808738) 1 NC_011071.1 KEGG: azo:azo0076 hypothetical protein; hypothetical protein 1808738 6475479 Smal_1609 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002027997.1 1807752 R 391008 CDS YP_002027998.1 194365388 6475480 complement(1808735..1809358) 1 NC_011071.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1809358 6475480 Smal_1610 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma factor YP_002027998.1 1808735 R 391008 CDS YP_002027999.1 194365389 6475481 1809501..1812341 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: cps:CPS_4411 GAF domain/GGDEF domain/EAL domain protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 1812341 6475481 Smal_1611 Stenotrophomonas maltophilia R551-3 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_002027999.1 1809501 D 391008 CDS YP_002028000.1 194365390 6475482 complement(1812361..1812954) 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcb:XC_2752 hypothetical protein; hypothetical protein 1812954 6475482 Smal_1612 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028000.1 1812361 R 391008 CDS YP_002028001.1 194365391 6475483 complement(1813145..1814641) 1 NC_011071.1 PFAM: aminotransferase class-III; KEGG: xcv:XCV2698 putative ornithine/acetylornithine aminotransferase; class III aminotransferase 1814641 6475483 Smal_1613 Stenotrophomonas maltophilia R551-3 class III aminotransferase YP_002028001.1 1813145 R 391008 CDS YP_002028002.1 194365392 6475484 1814888..1815919 1 NC_011071.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1815919 queA 6475484 queA Stenotrophomonas maltophilia R551-3 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_002028002.1 1814888 D 391008 CDS YP_002028003.1 194365393 6475485 1816046..1817176 1 NC_011071.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1817176 tgt 6475485 tgt Stenotrophomonas maltophilia R551-3 queuine tRNA-ribosyltransferase YP_002028003.1 1816046 D 391008 CDS YP_002028004.1 194365394 6475486 1817311..1817655 1 NC_011071.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1817655 yajC 6475486 yajC Stenotrophomonas maltophilia R551-3 preprotein translocase subunit YajC YP_002028004.1 1817311 D 391008 CDS YP_002028005.1 194365395 6475487 1817717..1819573 1 NC_011071.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1819573 secD 6475487 secD Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecD YP_002028005.1 1817717 D 391008 CDS YP_002028006.1 194365396 6475488 1819589..1820569 1 NC_011071.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1820569 secF 6475488 secF Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecF YP_002028006.1 1819589 D 391008 CDS YP_002028007.1 194365397 6475489 1821286..1822545 1 NC_011071.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 1822545 6475489 Smal_1619 Stenotrophomonas maltophilia R551-3 trans-2-enoyl-CoA reductase YP_002028007.1 1821286 D 391008 CDS YP_002028008.1 194365398 6475490 complement(1822657..1824726) 1 NC_011071.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xoo:XOO2725 hypothetical protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1824726 6475490 Smal_1620 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002028008.1 1822657 R 391008 CDS YP_002028009.1 194365399 6475491 complement(1824818..1826002) 1 NC_011071.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_1825 hypothetical protein; hypothetical protein 1826002 6475491 Smal_1621 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028009.1 1824818 R 391008 CDS YP_002028010.1 194365400 6475492 complement(1825999..1826547) 1 NC_011071.1 PFAM: YaeQ family protein; KEGG: xac:XAC2396 hypothetical protein; YaeQ family protein 1826547 6475492 Smal_1622 Stenotrophomonas maltophilia R551-3 YaeQ family protein YP_002028010.1 1825999 R 391008 CDS YP_002028011.1 194365401 6475493 1826671..1827549 1 NC_011071.1 PFAM: pseudouridine synthase; KEGG: pae:PA2043 hypothetical protein; pseudouridine synthase 1827549 6475493 Smal_1623 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002028011.1 1826671 D 391008 CDS YP_002028012.1 194365402 6475494 complement(1827556..1828044) 1 NC_011071.1 PFAM: protein of unknown function DUF188; KEGG: xcb:XC_1827 hypothetical protein; hypothetical protein 1828044 6475494 Smal_1624 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028012.1 1827556 R 391008 CDS YP_002028013.1 194365403 6475495 1828346..1828555 1 NC_011071.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xac:XAC2395 major cold shock protein; cold-shock DNA-binding domain-containing protein 1828555 6475495 Smal_1625 Stenotrophomonas maltophilia R551-3 cold-shock DNA-binding domain-containing protein YP_002028013.1 1828346 D 391008 CDS YP_002028014.1 194365404 6475496 1828710..1829399 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV2591 glutathione transferase; glutathione S-transferase domain-containing protein 1829399 6475496 Smal_1626 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002028014.1 1828710 D 391008 CDS YP_002028015.1 194365405 6475497 1829432..1830997 1 NC_011071.1 PFAM: protein of unknown function UPF0061; KEGG: xcv:XCV2589 hypothetical protein; hypothetical protein 1830997 6475497 Smal_1627 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028015.1 1829432 D 391008 CDS YP_002028016.1 194365406 6475498 1831559..1832122 1 NC_011071.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1832122 6475498 Smal_1628 Stenotrophomonas maltophilia R551-3 adenine phosphoribosyltransferase YP_002028016.1 1831559 D 391008 CDS YP_002028017.1 194365407 6475499 complement(1832265..1833641) 1 NC_011071.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1833641 6475499 Smal_1629 Stenotrophomonas maltophilia R551-3 ATP-dependent RNA helicase DbpA YP_002028017.1 1832265 R 391008 CDS YP_002028018.1 194365408 6475500 complement(1833796..1834875) 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xoo:XOO2200 hypothetical protein; hypothetical protein 1834875 6475500 Smal_1630 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028018.1 1833796 R 391008 CDS YP_002028019.1 194365409 6475501 1834978..1835853 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV2184 transcriptional regulator, LysR family; LysR family transcriptional regulator 1835853 6475501 Smal_1631 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028019.1 1834978 D 391008 CDS YP_002028020.1 194365410 6475502 1836182..1838065 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1834 ABC transporter ATP-binding protein; ABC transporter-like protein 1838065 6475502 Smal_1632 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028020.1 1836182 D 391008 CDS YP_002028021.1 194365411 6475503 1838496..1839461 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 1839461 6475503 Smal_1633 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002028021.1 1838496 D 391008 CDS YP_002028022.1 194365412 6475504 complement(1839512..1839973) 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: xoo:XOO2646 cytochrome c552; cytochrome c class I 1839973 6475504 Smal_1634 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002028022.1 1839512 R 391008 CDS YP_002028023.1 194365413 6475505 complement(1839983..1840372) 1 NC_011071.1 KEGG: xcv:XCV2229 putative cytochrome; putative cytochrome 1840372 6475505 Smal_1635 Stenotrophomonas maltophilia R551-3 putative cytochrome YP_002028023.1 1839983 R 391008 CDS YP_002028024.1 194365414 6475506 1840579..1841730 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV2230 membrane fusion protein; RND family efflux transporter MFP subunit 1841730 6475506 Smal_1636 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028024.1 1840579 D 391008 CDS YP_002028025.1 194365415 6475507 1841727..1845248 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xcv:XCV2231 RND superfamily protein; acriflavin resistance protein 1845248 6475507 Smal_1637 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002028025.1 1841727 D 391008 CDS YP_002028026.1 194365416 6475508 1845245..1848325 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xcb:XC_1972 transport protein; acriflavin resistance protein 1848325 6475508 Smal_1638 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002028026.1 1845245 D 391008 CDS YP_002028027.1 194365417 6475509 complement(1848518..1849750) 1 NC_011071.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: xcb:XC_1917 pheromone shutdown protein; TraB family protein 1849750 6475509 Smal_1639 Stenotrophomonas maltophilia R551-3 TraB family protein YP_002028027.1 1848518 R 391008 CDS YP_002028028.1 194365418 6475510 complement(1849743..1850273) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1918 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 1850273 6475510 Smal_1640 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028028.1 1849743 R 391008 CDS YP_002028029.1 194365419 6475511 complement(1850288..1851175) 1 NC_011071.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xom:XOO_2045 beta-alanine synthetase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1851175 6475511 Smal_1641 Stenotrophomonas maltophilia R551-3 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002028029.1 1850288 R 391008 CDS YP_002028030.1 194365420 6475512 complement(1851340..1852377) 1 NC_011071.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: xcb:XC_1920 hypothetical protein; Agmatine deiminase 1852377 6475512 Smal_1642 Stenotrophomonas maltophilia R551-3 Agmatine deiminase YP_002028030.1 1851340 R 391008 CDS YP_002028031.1 194365421 6475513 complement(1852417..1852746) 1 NC_011071.1 KEGG: xom:XOO_2047 hypothetical protein; hypothetical protein 1852746 6475513 Smal_1643 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028031.1 1852417 R 391008 CDS YP_002028032.1 194365422 6475514 complement(1852893..1853018) 1 NC_011071.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 1853018 rpmJ 6475514 rpmJ Stenotrophomonas maltophilia R551-3 50S ribosomal protein L36 YP_002028032.1 1852893 R 391008 CDS YP_002028033.1 194365423 6475515 1853216..1853893 1 NC_011071.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1853893 cmk 6475515 cmk Stenotrophomonas maltophilia R551-3 cytidylate kinase YP_002028033.1 1853216 D 391008 CDS YP_002028034.1 194365424 6475516 1854092..1855777 1 NC_011071.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1855777 rpsA 6475516 rpsA Stenotrophomonas maltophilia R551-3 30S ribosomal protein S1 YP_002028034.1 1854092 D 391008 CDS YP_002028035.1 194365425 6475517 1855865..1856170 1 NC_011071.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1856170 ihfB 6475517 ihfB Stenotrophomonas maltophilia R551-3 integration host factor subunit beta YP_002028035.1 1855865 D 391008 CDS YP_002028036.1 194365426 6475518 1856248..1856532 1 NC_011071.1 KEGG: xcb:XC_1926 hypothetical protein; hypothetical protein 1856532 6475518 Smal_1648 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028036.1 1856248 D 391008 CDS YP_002028037.1 194365427 6475519 1856539..1857717 1 NC_011071.1 KEGG: xac:XAC2295 hypothetical protein; hypothetical protein 1857717 6475519 Smal_1649 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028037.1 1856539 D 391008 CDS YP_002028038.1 194365428 6475520 1857721..1858710 1 NC_011071.1 PFAM: glycosyl transferase family 4; KEGG: xcc:XCC2190 lipopolysaccharide core biosynthesis protein; glycosyl transferase family protein 1858710 6475520 Smal_1650 Stenotrophomonas maltophilia R551-3 glycosyl transferase family protein YP_002028038.1 1857721 D 391008 CDS YP_002028039.1 194365429 6475521 1858714..1860627 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: xcv:XCV2491 putative sugar epimerase; polysaccharide biosynthesis protein CapD 1860627 6475521 Smal_1651 Stenotrophomonas maltophilia R551-3 polysaccharide biosynthesis protein CapD YP_002028039.1 1858714 D 391008 CDS YP_002028040.1 194365430 6475522 1860624..1861502 1 NC_011071.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: xcv:XCV2490 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 1861502 6475522 Smal_1652 Stenotrophomonas maltophilia R551-3 UTP-glucose-1-phosphate uridylyltransferase YP_002028040.1 1860624 D 391008 CDS YP_002028041.1 194365431 6475523 complement(1861977..1863185) 1 NC_011071.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1863185 6475523 Smal_1653 Stenotrophomonas maltophilia R551-3 acetyl-CoA acetyltransferase YP_002028041.1 1861977 R 391008 CDS YP_002028042.1 194365432 6475524 complement(1863322..1865694) 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xcb:XC_2205 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 1865694 6475524 Smal_1654 Stenotrophomonas maltophilia R551-3 NAD-binding 3-hydroxyacyl-CoA dehydrogenase YP_002028042.1 1863322 R 391008 CDS YP_002028043.1 194365433 6475525 complement(1865721..1866389) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcb:XC_2204 transcriptional regulator TetR family; TetR family transcriptional regulator 1866389 6475525 Smal_1655 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028043.1 1865721 R 391008 CDS YP_002028044.1 194365434 6475526 1866758..1867183 1 NC_011071.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1867183 ndk 6475526 ndk Stenotrophomonas maltophilia R551-3 nucleoside diphosphate kinase YP_002028044.1 1866758 D 391008 CDS YP_002028045.1 194365435 6475527 1867194..1868399 1 NC_011071.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: xac:XAC2016 hypothetical protein; radical SAM enzyme, Cfr family 1868399 6475527 Smal_1657 Stenotrophomonas maltophilia R551-3 radical SAM enzyme, Cfr family YP_002028045.1 1867194 D 391008 CDS YP_002028046.1 194365436 6475528 1868386..1869171 1 NC_011071.1 TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC2017 fimbrial biogenesis protein; type IV pilus biogenesis/stability protein PilW 1869171 6475528 Smal_1658 Stenotrophomonas maltophilia R551-3 type IV pilus biogenesis/stability protein PilW YP_002028046.1 1868386 D 391008 CDS YP_002028047.1 194365437 6475529 1869190..1870059 1 NC_011071.1 SMART: helix-turn-helix domain protein; KEGG: xcb:XC_2200 hypothetical protein; XRE family transcriptional regulator 1870059 6475529 Smal_1659 Stenotrophomonas maltophilia R551-3 XRE family transcriptional regulator YP_002028047.1 1869190 D 391008 CDS YP_002028048.1 194365438 6475530 1870125..1870763 1 NC_011071.1 KEGG: xac:XAC2019 hypothetical protein; hypothetical protein 1870763 6475530 Smal_1660 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028048.1 1870125 D 391008 CDS YP_002028049.1 194365439 6475531 1870763..1871971 1 NC_011071.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2198 hypothetical protein; outer membrane assembly lipoprotein YfgL 1871971 6475531 Smal_1661 Stenotrophomonas maltophilia R551-3 outer membrane assembly lipoprotein YfgL YP_002028049.1 1870763 D 391008 CDS YP_002028050.1 194365440 6475532 1871988..1873385 1 NC_011071.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1873385 engA 6475532 engA Stenotrophomonas maltophilia R551-3 GTP-binding protein EngA YP_002028050.1 1871988 D 391008 CDS YP_002028051.1 194365441 6475533 complement(1873524..1874306) 1 NC_011071.1 KEGG: bav:BAV1106 amino acid efflux protein; hypothetical protein 1874306 6475533 Smal_1663 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028051.1 1873524 R 391008 CDS YP_002028052.1 194365442 6475534 complement(1874401..1875030) 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA 1875030 6475534 Smal_1664 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002028052.1 1874401 R 391008 CDS YP_002028053.1 194365443 6475535 complement(1875105..1875920) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bav:BAV1107 AraC-family transcriptional regulator; AraC family transcriptional regulator 1875920 6475535 Smal_1665 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028053.1 1875105 R 391008 CDS YP_002028054.1 194365444 6475536 1876010..1877146 1 NC_011071.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1877146 6475536 Smal_1666 Stenotrophomonas maltophilia R551-3 molybdopterin biosynthesis protein MoeB YP_002028054.1 1876010 D 391008 CDS YP_002028055.1 194365445 6475538 1877587..1879419 1 NC_011071.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xcb:XC_1931 transport protein; potassium efflux system protein 1879419 6475538 Smal_1668 Stenotrophomonas maltophilia R551-3 potassium efflux system protein YP_002028055.1 1877587 D 391008 CDS YP_002028056.1 194365446 6475539 1879646..1880524 1 NC_011071.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1880524 6475539 Smal_1669 Stenotrophomonas maltophilia R551-3 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002028056.1 1879646 D 391008 CDS YP_002028057.1 194365447 6475540 1881008..1882465 1 NC_011071.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1882465 6475540 Smal_1670 Stenotrophomonas maltophilia R551-3 inosine 5'-monophosphate dehydrogenase YP_002028057.1 1881008 D 391008 CDS YP_002028058.1 194365448 6475541 1882465..1883049 1 NC_011071.1 hypothetical protein 1883049 6475541 Smal_1671 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028058.1 1882465 D 391008 CDS YP_002028059.1 194365449 6475542 1883046..1884611 1 NC_011071.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1884611 guaA 6475542 guaA Stenotrophomonas maltophilia R551-3 GMP synthase YP_002028059.1 1883046 D 391008 CDS YP_002028060.1 194365450 6475543 complement(1884692..1884904) 1 NC_011071.1 KEGG: psb:Psyr_0099 hypothetical protein; hypothetical protein 1884904 6475543 Smal_1673 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028060.1 1884692 R 391008 CDS YP_002028061.1 194365451 6475544 complement(1884907..1886682) 1 NC_011071.1 PFAM: protein of unknown function DUF87; KEGG: mms:mma_0005 hypothetical protein; hypothetical protein 1886682 6475544 Smal_1674 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028061.1 1884907 R 391008 CDS YP_002028062.1 194365452 6475545 complement(1886682..1887869) 1 NC_011071.1 KEGG: mms:mma_0004 hypothetical protein; hypothetical protein 1887869 6475545 Smal_1675 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028062.1 1886682 R 391008 CDS YP_002028063.1 194365453 6475546 complement(1887911..1889320) 1 NC_011071.1 KEGG: bbt:BBta_p0034 hypothetical protein; hypothetical protein 1889320 6475546 Smal_1676 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028063.1 1887911 R 391008 CDS YP_002028064.1 194365454 6475547 complement(1890089..1890445) 1 NC_011071.1 hypothetical protein 1890445 6475547 Smal_1677 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028064.1 1890089 R 391008 CDS YP_002028065.1 194365455 6475548 complement(1890998..1891915) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_2436 transcriptional regulator, LysR family; LysR family transcriptional regulator 1891915 6475548 Smal_1678 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028065.1 1890998 R 391008 CDS YP_002028066.1 194365456 6475549 1892012..1892851 1 NC_011071.1 PFAM: ThiJ/PfpI domain protein; KEGG: pfo:PflO1_2435 ThiJ/PfpI; ThiJ/PfpI domain-containing protein 1892851 6475549 Smal_1679 Stenotrophomonas maltophilia R551-3 ThiJ/PfpI domain-containing protein YP_002028066.1 1892012 D 391008 CDS YP_002028067.1 194365457 6475550 1892949..1893686 1 NC_011071.1 hypothetical protein 1893686 6475550 Smal_1680 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028067.1 1892949 D 391008 CDS YP_002028068.1 194365458 6475551 complement(1893726..1895102) 1 NC_011071.1 KEGG: mmr:Mmar10_1918 peptidase M1, membrane alanine aminopeptidase; hypothetical protein 1895102 6475551 Smal_1681 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028068.1 1893726 R 391008 CDS YP_002028069.1 194365459 6475552 1895255..1896037 1 NC_011071.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet1600 putative oxidoreductase; 3-hydroxybutyrate dehydrogenase 1896037 6475552 Smal_1682 Stenotrophomonas maltophilia R551-3 3-hydroxybutyrate dehydrogenase YP_002028069.1 1895255 D 391008 CDS YP_002028070.1 194365460 6475553 complement(1896110..1896568) 1 NC_011071.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bur:Bcep18194_A3794 hypothetical protein; Activator of Hsp90 ATPase 1 family protein 1896568 6475553 Smal_1683 Stenotrophomonas maltophilia R551-3 Activator of Hsp90 ATPase 1 family protein YP_002028070.1 1896110 R 391008 CDS YP_002028071.1 194365461 6475554 complement(1896571..1896885) 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: lbi:LEPBI_I0212 putative transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1896885 6475554 Smal_1684 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002028071.1 1896571 R 391008 CDS YP_002028072.1 194365462 6475555 complement(1896897..1897352) 1 NC_011071.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: afw:Anae109_3662 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein 1897352 6475555 Smal_1685 Stenotrophomonas maltophilia R551-3 Activator of Hsp90 ATPase 1 family protein YP_002028072.1 1896897 R 391008 CDS YP_002028073.1 194365463 6475556 1897516..1898040 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C7217 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1898040 6475556 Smal_1686 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028073.1 1897516 D 391008 CDS YP_002028074.1 194365464 6475557 complement(1898147..1898986) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bvi:Bcep1808_5648 short chain dehydrogenase; short chain dehydrogenase 1898986 6475557 Smal_1687 Stenotrophomonas maltophilia R551-3 short chain dehydrogenase YP_002028074.1 1898147 R 391008 CDS YP_002028075.1 194365465 6475558 1899089..1900039 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA1380 probable transcriptional regulator; AraC family transcriptional regulator 1900039 6475558 Smal_1688 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028075.1 1899089 D 391008 CDS YP_002028076.1 194365466 6475559 1900174..1900761 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: bid:Bind_2880 transcriptional regulator, TetR family; TetR family transcriptional regulator 1900761 6475559 Smal_1689 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028076.1 1900174 D 391008 CDS YP_002028077.1 194365467 6475560 1900851..1901351 1 NC_011071.1 KEGG: fjo:Fjoh_3894 hypothetical protein; hypothetical protein 1901351 6475560 Smal_1690 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028077.1 1900851 D 391008 CDS YP_002028078.1 194365468 6475561 complement(1901370..1902614) 1 NC_011071.1 hypothetical protein 1902614 6475561 Smal_1691 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028078.1 1901370 R 391008 CDS YP_002028079.1 194365469 6475562 complement(1902738..1903739) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bac:BamMC406_4864 transcriptional regulator, AraC family; AraC family transcriptional regulator 1903739 6475562 Smal_1692 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028079.1 1902738 R 391008 CDS YP_002028080.1 194365470 6475563 1904057..1906633 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_C0393 putative TonB-dependent siderophore receptor; TonB-dependent receptor 1906633 6475563 Smal_1693 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028080.1 1904057 D 391008 CDS YP_002028081.1 194365471 6475564 1906715..1907296 1 NC_011071.1 PFAM: NADPH-dependent FMN reductase; KEGG: pfo:PflO1_3915 FMN reductase; FMN reductase 1907296 6475564 Smal_1694 Stenotrophomonas maltophilia R551-3 FMN reductase YP_002028081.1 1906715 D 391008 CDS YP_002028082.1 194365472 6475565 1907454..1907816 1 NC_011071.1 KEGG: bja:bll1287 hypothetical protein; hypothetical protein 1907816 6475565 Smal_1695 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028082.1 1907454 D 391008 CDS YP_002028083.1 194365473 6475566 1907831..1908808 1 NC_011071.1 PFAM: Luciferase-like monooxygenase; KEGG: bmn:BMA10247_A0562 luciferase-like monooxygenase; luciferase-like monooxygenase 1908808 6475566 Smal_1696 Stenotrophomonas maltophilia R551-3 luciferase-like monooxygenase YP_002028083.1 1907831 D 391008 CDS YP_002028084.1 194365474 6475567 1908827..1910170 1 NC_011071.1 KEGG: bur:Bcep18194_B1532 flavin-dependent oxidoreductase; flavin-dependent oxidoreductase 1910170 6475567 Smal_1697 Stenotrophomonas maltophilia R551-3 flavin-dependent oxidoreductase YP_002028084.1 1908827 D 391008 CDS YP_002028085.1 194365475 6475568 1910175..1911395 1 NC_011071.1 KEGG: oan:Oant_4353 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1911395 6475568 Smal_1698 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002028085.1 1910175 D 391008 CDS YP_002028086.1 194365476 6475569 1911392..1911943 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_L_2808 hypothetical protein; N-acetyltransferase GCN5 1911943 6475569 Smal_1699 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028086.1 1911392 D 391008 CDS YP_002028087.1 194365477 6475570 1911940..1913685 1 NC_011071.1 KEGG: atc:AGR_L_2810 polar amino acid transport system permease proetin / polar amino acid transport system ATP-binding proetin; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; polar amino acid ABC transporter inner membrane subunit 1913685 6475570 Smal_1700 Stenotrophomonas maltophilia R551-3 polar amino acid ABC transporter inner membrane subunit YP_002028087.1 1911940 D 391008 CDS YP_002028088.1 194365478 6475571 1913702..1914676 1 NC_011071.1 PFAM: extracellular solute-binding protein family 3; KEGG: oan:Oant_4349 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1914676 6475571 Smal_1701 Stenotrophomonas maltophilia R551-3 family 3 extracellular solute-binding protein YP_002028088.1 1913702 D 391008 CDS YP_002028089.1 194365479 6475572 complement(1914740..1917856) 1 NC_011071.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: mca:MCA0553 discoidin domain protein; coagulation factor 5/8 type domain-containing protein 1917856 6475572 Smal_1702 Stenotrophomonas maltophilia R551-3 coagulation factor 5/8 type domain-containing protein YP_002028089.1 1914740 R 391008 CDS YP_002028090.1 194365480 6475573 1918079..1918321 1 NC_011071.1 KEGG: dac:Daci_0496 hypothetical protein; hypothetical protein 1918321 6475573 Smal_1703 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028090.1 1918079 D 391008 CDS YP_002028091.1 194365481 6475574 1918352..1918852 1 NC_011071.1 KEGG: dac:Daci_0495 prophage CP4-57 regulatory; prophage CP4-57 regulatory 1918852 6475574 Smal_1704 Stenotrophomonas maltophilia R551-3 prophage CP4-57 regulatory YP_002028091.1 1918352 D 391008 CDS YP_002028092.1 194365482 6475575 complement(1918941..1919834) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_2480 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1919834 6475575 Smal_1705 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028092.1 1918941 R 391008 CDS YP_002028093.1 194365483 6475576 complement(1919858..1920355) 1 NC_011071.1 KEGG: pol:Bpro_4766 hypothetical protein; hypothetical protein 1920355 6475576 Smal_1706 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028093.1 1919858 R 391008 CDS YP_002028094.1 194365484 6475577 complement(1920372..1921115) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR domain protein; KEGG: xac:XAC0083 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1921115 6475577 Smal_1707 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028094.1 1920372 R 391008 CDS YP_002028095.1 194365485 6475578 complement(1921338..1922414) 1 NC_011071.1 KEGG: bxe:Bxe_C1221 hypothetical protein; hypothetical protein 1922414 6475578 Smal_1708 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028095.1 1921338 R 391008 CDS YP_002028096.1 194365486 6475579 1922519..1923130 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcv:XCV0258 transcriptional regulator, TetR family; TetR family transcriptional regulator 1923130 6475579 Smal_1709 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028096.1 1922519 D 391008 CDS YP_002028097.1 194365487 6475580 complement(1923127..1925073) 1 NC_011071.1 PFAM: EAL domain protein; KEGG: atc:AGR_C_2062 hypothetical protein; diguanylate phosphodiesterase 1925073 6475580 Smal_1710 Stenotrophomonas maltophilia R551-3 diguanylate phosphodiesterase YP_002028097.1 1923127 R 391008 CDS YP_002028098.1 194365488 6475581 complement(1925137..1926039) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: plu:plu1320 hypothetical protein; LysR family transcriptional regulator 1926039 6475581 Smal_1711 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028098.1 1925137 R 391008 CDS YP_002028099.1 194365489 6475582 1926159..1927670 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3197 hypothetical protein; major facilitator superfamily protein 1927670 6475582 Smal_1712 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028099.1 1926159 D 391008 CDS YP_002028100.1 194365490 6475583 complement(1927664..1928380) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ppu:PP_2507 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1928380 6475583 Smal_1713 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028100.1 1927664 R 391008 CDS YP_002028101.1 194365491 6475584 complement(1928409..1929137) 1 NC_011071.1 KEGG: hch:HCH_03439 probable acetyltransferase; putative acetyltransferase 1929137 6475584 Smal_1714 Stenotrophomonas maltophilia R551-3 putative acetyltransferase YP_002028101.1 1928409 R 391008 CDS YP_002028102.1 194365492 6475585 complement(1929152..1929817) 1 NC_011071.1 PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: pfl:PFL_5005 transcriptional regulator, ArsR family/rhodanese-like domain protein; ArsR family transcriptional regulator 1929817 6475585 Smal_1715 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002028102.1 1929152 R 391008 CDS YP_002028103.1 194365493 6475586 1929873..1930376 1 NC_011071.1 KEGG: pfl:PFL_5006 hypothetical protein; hypothetical protein 1930376 6475586 Smal_1716 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028103.1 1929873 D 391008 CDS YP_002028104.1 194365494 6475587 1930418..1931221 1 NC_011071.1 PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH02947 putative aminoglycoside 3'-phosphotransferase protein; aminoglycoside phosphotransferase 1931221 6475587 Smal_1717 Stenotrophomonas maltophilia R551-3 aminoglycoside phosphotransferase YP_002028104.1 1930418 D 391008 CDS YP_002028105.1 194365495 6475588 complement(1931194..1931619) 1 NC_011071.1 PFAM: DoxX family protein; KEGG: pau:PA14_09540 hypothetical protein; DoxX family protein 1931619 6475588 Smal_1718 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002028105.1 1931194 R 391008 CDS YP_002028106.1 194365496 6475589 1931763..1932353 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: dac:Daci_4533 transcriptional regulator, TetR family; TetR family transcriptional regulator 1932353 6475589 Smal_1719 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028106.1 1931763 D 391008 CDS YP_002028107.1 194365497 6475590 1932350..1933384 1 NC_011071.1 KEGG: dac:Daci_4532 transport protein; transporter 1933384 6475590 Smal_1720 Stenotrophomonas maltophilia R551-3 transporter YP_002028107.1 1932350 D 391008 CDS YP_002028108.1 194365498 6475591 1933483..1934490 1 NC_011071.1 PFAM: aminoglycoside phosphotransferase; KEGG: lpn:lpg1492 spectinomycin phosphotransferase; aminoglycoside phosphotransferase 1934490 6475591 Smal_1721 Stenotrophomonas maltophilia R551-3 aminoglycoside phosphotransferase YP_002028108.1 1933483 D 391008 CDS YP_002028109.1 194365499 6475592 complement(1934633..1935556) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC1803 integral membrane protein; hypothetical protein 1935556 6475592 Smal_1722 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028109.1 1934633 R 391008 CDS YP_002028110.1 194365500 6475593 complement(1935553..1936614) 1 NC_011071.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1936614 murB 6475593 murB Stenotrophomonas maltophilia R551-3 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002028110.1 1935553 R 391008 CDS YP_002028111.1 194365501 6475594 complement(1936623..1937678) 1 NC_011071.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1937678 6475594 Smal_1724 Stenotrophomonas maltophilia R551-3 dihydroorotate dehydrogenase 2 YP_002028111.1 1936623 R 391008 CDS YP_002028112.1 194365502 6475595 complement(1937687..1938457) 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2447 hypothetical protein; type 11 methyltransferase 1938457 6475595 Smal_1725 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002028112.1 1937687 R 391008 CDS YP_002028113.1 194365503 6475596 complement(1938463..1938747) 1 NC_011071.1 KEGG: xac:XAC1807 hypothetical protein; hypothetical protein 1938747 6475596 Smal_1726 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028113.1 1938463 R 391008 CDS YP_002028114.1 194365504 6475597 complement(1938886..1939725) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_0429 3-oxoacyl-[ACP] reductase; short-chain dehydrogenase/reductase SDR 1939725 6475597 Smal_1727 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028114.1 1938886 R 391008 CDS YP_002028115.1 194365505 6475598 complement(1939725..1941257) 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: xcb:XC_2445 aldehyde dehydrogenase; aldehyde dehydrogenase 1941257 6475598 Smal_1728 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002028115.1 1939725 R 391008 CDS YP_002028116.1 194365506 6475600 complement(1941554..1942444) 1 NC_011071.1 PFAM: dihydrodipicolinate synthetase; KEGG: sen:SACE_1253 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 1942444 6475600 Smal_1729 Stenotrophomonas maltophilia R551-3 dihydrodipicolinate synthetase YP_002028116.1 1941554 R 391008 CDS YP_002028117.1 194365507 6475601 1942583..1943056 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bav:BAV2497 acetyltransferase; N-acetyltransferase GCN5 1943056 6475601 Smal_1730 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028117.1 1942583 D 391008 CDS YP_002028118.1 194365508 6475602 complement(1943063..1943620) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_0807 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1943620 6475602 Smal_1731 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028118.1 1943063 R 391008 CDS YP_002028119.1 194365509 6475603 1943734..1944660 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppf:Pput_2154 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1944660 6475603 Smal_1732 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028119.1 1943734 D 391008 CDS YP_002028120.1 194365510 6475604 complement(1944608..1945438) 1 NC_011071.1 PFAM: UspA domain protein; KEGG: bpt:Bpet4186 hypothetical protein; UspA domain-containing protein 1945438 6475604 Smal_1733 Stenotrophomonas maltophilia R551-3 UspA domain-containing protein YP_002028120.1 1944608 R 391008 CDS YP_002028121.1 194365511 6475605 1945609..1946175 1 NC_011071.1 KEGG: xom:XOO_2873 transcriptional regulator NfxB; transcriptional regulator NfxB 1946175 6475605 Smal_1734 Stenotrophomonas maltophilia R551-3 transcriptional regulator NfxB YP_002028121.1 1945609 D 391008 CDS YP_002028122.1 194365512 6475606 complement(1946207..1946566) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xac:XAC1284 two-component system regulatory protein; response regulator receiver protein 1946566 6475606 Smal_1735 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028122.1 1946207 R 391008 CDS YP_002028123.1 194365513 6475607 complement(1946556..1947719) 1 NC_011071.1 KEGG: xac:XAC1282 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1947719 6475607 Smal_1736 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor signal transduction histidine kinase YP_002028123.1 1946556 R 391008 CDS YP_002028124.1 194365514 6475608 1947872..1950985 1 NC_011071.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3057 two-component system sensor protein; multi-sensor hybrid histidine kinase 1950985 6475608 Smal_1737 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002028124.1 1947872 D 391008 CDS YP_002028125.1 194365515 6475609 1950982..1951806 1 NC_011071.1 PFAM: MCP methyltransferase CheR-type; KEGG: xcb:XC_3058 chemotaxis protein; CheR-type MCP methyltransferase 1951806 6475609 Smal_1738 Stenotrophomonas maltophilia R551-3 CheR-type MCP methyltransferase YP_002028125.1 1950982 D 391008 CDS YP_002028126.1 194365516 6475610 1951806..1952381 1 NC_011071.1 PFAM: CheB methylesterase; KEGG: xac:XAC1280 protein-glutamate methylesterase; CheB methylesterase 1952381 6475610 Smal_1739 Stenotrophomonas maltophilia R551-3 CheB methylesterase YP_002028126.1 1951806 D 391008 CDS YP_002028127.1 194365517 6475611 1952378..1953511 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3060 two-component system regulatory protein; response regulator receiver sensor signal transduction histidine kinase 1953511 6475611 Smal_1740 Stenotrophomonas maltophilia R551-3 response regulator receiver sensor signal transduction histidine kinase YP_002028127.1 1952378 D 391008 CDS YP_002028128.1 194365518 6475612 1953595..1954023 1 NC_011071.1 PFAM: BLUF domain protein; KEGG: xac:XAC2120 hypothetical protein; BLUF domain-containing protein 1954023 6475612 Smal_1741 Stenotrophomonas maltophilia R551-3 BLUF domain-containing protein YP_002028128.1 1953595 D 391008 CDS YP_002028129.1 194365519 6475613 complement(1954039..1954359) 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: hch:HCH_04177 predicted transcriptional regulator; ArsR family transcriptional regulator 1954359 6475613 Smal_1742 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002028129.1 1954039 R 391008 CDS YP_002028130.1 194365520 6475614 1954446..1954883 1 NC_011071.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: abo:ABO_2636 hypothetical protein; hypothetical protein 1954883 6475614 Smal_1743 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028130.1 1954446 D 391008 CDS YP_002028131.1 194365521 6475615 1954880..1955293 1 NC_011071.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mrd:Mrad2831_5966 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 1955293 6475615 Smal_1744 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028131.1 1954880 D 391008 CDS YP_002028132.1 194365522 6475616 1955361..1956413 1 NC_011071.1 PFAM: Choloylglycine hydrolase; peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bvi:Bcep1808_5029 choloylglycine hydrolase; Choloylglycine hydrolase 1956413 6475616 Smal_1745 Stenotrophomonas maltophilia R551-3 Choloylglycine hydrolase YP_002028132.1 1955361 D 391008 CDS YP_002028133.1 194365523 6475617 complement(1956410..1957189) 1 NC_011071.1 KEGG: xcb:XC_2926 hypothetical protein; hypothetical protein 1957189 6475617 Smal_1746 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028133.1 1956410 R 391008 CDS YP_002028134.1 194365524 6475618 1957271..1957966 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_3410 transcriptional regulator; AraC family transcriptional regulator 1957966 6475618 Smal_1747 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028134.1 1957271 D 391008 CDS YP_002028135.1 194365525 6475619 1958132..1959082 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_3411 integral membrane protein; hypothetical protein 1959082 6475619 Smal_1748 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028135.1 1958132 D 391008 CDS YP_002028136.1 194365526 6475620 1959440..1961944 1 NC_011071.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1961944 thrA 6475620 thrA Stenotrophomonas maltophilia R551-3 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002028136.1 1959440 D 391008 CDS YP_002028137.1 194365527 6475621 1961941..1962855 1 NC_011071.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1962855 6475621 Smal_1750 Stenotrophomonas maltophilia R551-3 homoserine kinase YP_002028137.1 1961941 D 391008 CDS YP_002028138.1 194365528 6475622 1962885..1964171 1 NC_011071.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1964171 6475622 Smal_1751 Stenotrophomonas maltophilia R551-3 threonine synthase YP_002028138.1 1962885 D 391008 CDS YP_002028139.1 194365529 6475623 complement(1964275..1965027) 1 NC_011071.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: xac:XAC1825 fumarate and nitrate reduction regulatory protein; Crp/Fnr family transcriptional regulator 1965027 6475623 Smal_1752 Stenotrophomonas maltophilia R551-3 Crp/Fnr family transcriptional regulator YP_002028139.1 1964275 R 391008 CDS YP_002028140.1 194365530 6475624 1965155..1966552 1 NC_011071.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1966552 hisS 6475624 hisS Stenotrophomonas maltophilia R551-3 histidyl-tRNA synthetase YP_002028140.1 1965155 D 391008 CDS YP_002028141.1 194365531 6475625 1966552..1966845 1 NC_011071.1 hypothetical protein 1966845 6475625 Smal_1754 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028141.1 1966552 D 391008 CDS YP_002028142.1 194365532 6475626 1967119..1967427 1 NC_011071.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: xac:XAC1827 hypothetical protein; TrpR-like protein, YerC/YecD 1967427 6475626 Smal_1755 Stenotrophomonas maltophilia R551-3 TrpR-like protein, YerC/YecD YP_002028142.1 1967119 D 391008 CDS YP_002028143.1 194365533 6475627 1967462..1968373 1 NC_011071.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1968373 hisG 6475627 hisG Stenotrophomonas maltophilia R551-3 ATP phosphoribosyltransferase YP_002028143.1 1967462 D 391008 CDS YP_002028144.1 194365534 6475628 1968370..1969665 1 NC_011071.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1969665 hisD 6475628 hisD Stenotrophomonas maltophilia R551-3 histidinol dehydrogenase YP_002028144.1 1968370 D 391008 CDS YP_002028145.1 194365535 6475629 1969662..1970756 1 NC_011071.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1970756 6475629 Smal_1758 Stenotrophomonas maltophilia R551-3 histidinol-phosphate aminotransferase YP_002028145.1 1969662 D 391008 CDS YP_002028146.1 194365536 6475630 1970753..1971826 1 NC_011071.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1971826 6475630 Smal_1759 Stenotrophomonas maltophilia R551-3 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002028146.1 1970753 D 391008 CDS YP_002028147.1 194365537 6475631 1971823..1972425 1 NC_011071.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1972425 hisH 6475631 hisH Stenotrophomonas maltophilia R551-3 imidazole glycerol phosphate synthase subunit HisH YP_002028147.1 1971823 D 391008 CDS YP_002028148.1 194365538 6475632 1972422..1973156 1 NC_011071.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1973156 6475632 Smal_1761 Stenotrophomonas maltophilia R551-3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002028148.1 1972422 D 391008 CDS YP_002028149.1 194365539 6475633 1973150..1973926 1 NC_011071.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1973926 6475633 Smal_1762 Stenotrophomonas maltophilia R551-3 imidazole glycerol phosphate synthase subunit HisF YP_002028149.1 1973150 D 391008 CDS YP_002028150.1 194365540 6475634 1973916..1974536 1 NC_011071.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1974536 6475634 Smal_1763 Stenotrophomonas maltophilia R551-3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_002028150.1 1973916 D 391008 CDS YP_002028151.1 194365541 6475635 1974693..1976282 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: xcv:XCV1882 putative secreted protein; metallophosphoesterase 1976282 6475635 Smal_1764 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002028151.1 1974693 D 391008 CDS YP_002028152.1 194365542 6475636 1976319..1976603 1 NC_011071.1 hypothetical protein 1976603 6475636 Smal_1765 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028152.1 1976319 D 391008 CDS YP_002028153.1 194365543 6475637 1976688..1977710 1 NC_011071.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1977710 6475637 Smal_1766 Stenotrophomonas maltophilia R551-3 glucokinase YP_002028153.1 1976688 D 391008 CDS YP_002028154.1 194365544 6475638 1977762..1978760 1 NC_011071.1 PFAM: peptidase T2 asparaginase 2; KEGG: xcv:XCV3222 asparaginase precursor; N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase 1978760 6475638 Smal_1767 Stenotrophomonas maltophilia R551-3 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase YP_002028154.1 1977762 D 391008 CDS YP_002028155.1 194365545 6475639 1978757..1979488 1 NC_011071.1 PFAM: CutC family protein; KEGG: xac:XAC3091 copper homeostasis protein; CutC family protein 1979488 6475639 Smal_1768 Stenotrophomonas maltophilia R551-3 CutC family protein YP_002028155.1 1978757 D 391008 CDS YP_002028156.1 194365546 6475640 1979890..1982847 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_4311 hypothetical protein; TonB-dependent receptor 1982847 6475640 Smal_1769 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028156.1 1979890 D 391008 CDS YP_002028157.1 194365547 6475641 1983041..1985542 1 NC_011071.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1985542 6475641 Smal_1770 Stenotrophomonas maltophilia R551-3 heavy metal translocating P-type ATPase YP_002028157.1 1983041 D 391008 CDS YP_002028158.1 194365548 6475642 1985554..1986009 1 NC_011071.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1986009 6475642 Smal_1771 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002028158.1 1985554 D 391008 CDS YP_002028159.1 194365549 6475725 complement(1986091..1986285) 1 NC_011071.1 PFAM: Heavy metal transport/detoxification protein; KEGG: stm:STM0355 putative copper chaperone; heavy metal transport/detoxification protein 1986285 6475725 Smal_1772 Stenotrophomonas maltophilia R551-3 heavy metal transport/detoxification protein YP_002028159.1 1986091 R 391008 CDS YP_002028160.1 194365550 6475726 complement(1986487..1989630) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV1963 TonB-dependent outer membrane receptor; TonB-dependent receptor 1989630 6475726 Smal_1773 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028160.1 1986487 R 391008 CDS YP_002028161.1 194365551 6475727 1990663..1993128 1 NC_011071.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xcb:XC_4310 hypothetical protein; alpha-1,2-mannosidase 1993128 6475727 Smal_1774 Stenotrophomonas maltophilia R551-3 alpha-1,2-mannosidase YP_002028161.1 1990663 D 391008 CDS YP_002028162.1 194365552 6475728 1993225..1994277 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_2729 transcriptional regulator; LacI family transcriptional regulator 1994277 6475728 Smal_1775 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002028162.1 1993225 D 391008 CDS YP_002028163.1 194365553 6475729 1994338..1995651 1 NC_011071.1 TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_2728 glucose/galactose transporter; glucose/galactose transporter 1995651 6475729 Smal_1776 Stenotrophomonas maltophilia R551-3 glucose/galactose transporter YP_002028163.1 1994338 D 391008 CDS YP_002028164.1 194365554 6475730 1995659..1996654 1 NC_011071.1 PFAM: PfkB domain protein; KEGG: xcb:XC_2727 fructokinase; PfkB domain-containing protein 1996654 6475730 Smal_1777 Stenotrophomonas maltophilia R551-3 PfkB domain-containing protein YP_002028164.1 1995659 D 391008 CDS YP_002028165.1 194365555 6475731 1996651..1997877 1 NC_011071.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: xom:XOO_1953 hypothetical protein; N-acylglucosamine 2-epimerase 1997877 6475731 Smal_1778 Stenotrophomonas maltophilia R551-3 N-acylglucosamine 2-epimerase YP_002028165.1 1996651 D 391008 CDS YP_002028166.1 194365556 6475732 1998040..2000658 1 NC_011071.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: xcb:XC_1218 beta-mannosidase; glycoside hydrolase family 2 2000658 6475732 Smal_1779 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family 2 YP_002028166.1 1998040 D 391008 CDS YP_002028167.1 194365557 6475733 complement(2000745..2001440) 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xac:XAC1838 enolase-phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2001440 6475733 Smal_1780 Stenotrophomonas maltophilia R551-3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_002028167.1 2000745 R 391008 CDS YP_002028168.1 194365558 6475734 complement(2001444..2002001) 1 NC_011071.1 PFAM: Acireductone dioxygenase ARD; KEGG: xcv:XCV1885 acireductone dioxygenase family protein; Acireductone dioxygenase ARD 2002001 6475734 Smal_1781 Stenotrophomonas maltophilia R551-3 Acireductone dioxygenase ARD YP_002028168.1 2001444 R 391008 CDS YP_002028169.1 194365559 6475735 complement(2002089..2002730) 1 NC_011071.1 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase 2002730 6475735 Smal_1782 Stenotrophomonas maltophilia R551-3 methylthioribulose-1-phosphate dehydratase YP_002028169.1 2002089 R 391008 CDS YP_002028170.1 194365560 6475736 2002983..2003357 1 NC_011071.1 KEGG: sgl:SG0774 hypothetical protein; hypothetical protein 2003357 6475736 Smal_1783 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028170.1 2002983 D 391008 CDS YP_002028171.1 194365561 6475737 complement(2003418..2004845) 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: xac:XAC1841 cationic amino acid transporter; amino acid permease-associated protein 2004845 6475737 Smal_1784 Stenotrophomonas maltophilia R551-3 amino acid permease-associated protein YP_002028171.1 2003418 R 391008 CDS YP_002028172.1 194365562 6475738 complement(2004928..2006403) 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: xac:XAC1842 cationic amino acid transporter; amino acid permease-associated protein 2006403 6475738 Smal_1785 Stenotrophomonas maltophilia R551-3 amino acid permease-associated protein YP_002028172.1 2004928 R 391008 CDS YP_002028173.1 194365563 6475739 2006537..2007151 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: xoo:XOO2142 hypothetical protein; NUDIX hydrolase 2007151 6475739 Smal_1786 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002028173.1 2006537 D 391008 CDS YP_002028174.1 194365564 6475740 complement(2007231..2008472) 1 NC_011071.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2008472 6475740 Smal_1787 Stenotrophomonas maltophilia R551-3 D-3-phosphoglycerate dehydrogenase YP_002028174.1 2007231 R 391008 CDS YP_002028175.1 194365565 6475741 2008642..2010030 1 NC_011071.1 PFAM: FAD linked oxidase domain protein; KEGG: xcv:XCV1891 FAD linked oxidase; FAD linked oxidase domain-containing protein 2010030 6475741 Smal_1788 Stenotrophomonas maltophilia R551-3 FAD linked oxidase domain-containing protein YP_002028175.1 2008642 D 391008 CDS YP_002028176.1 194365566 6475742 2010093..2010392 1 NC_011071.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: xcv:XCV1892 putative secreted protein; hypothetical protein 2010392 6475742 Smal_1789 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028176.1 2010093 D 391008 CDS YP_002028177.1 194365567 6475743 2010433..2012229 1 NC_011071.1 KEGG: xac:XAC1847 hypothetical protein; hypothetical protein 2012229 6475743 Smal_1790 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028177.1 2010433 D 391008 CDS YP_002028178.1 194365568 6475744 complement(2012207..2013283) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_2525 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2013283 6475744 Smal_1791 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002028178.1 2012207 R 391008 CDS YP_002028179.1 194365569 6475745 complement(2013283..2014032) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_4353 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2014032 6475745 Smal_1792 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002028179.1 2013283 R 391008 CDS YP_002028180.1 194365570 6475746 2014129..2015277 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit 2015277 6475746 Smal_1793 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028180.1 2014129 D 391008 CDS YP_002028181.1 194365571 6475747 2015314..2018463 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dac:Daci_5741 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2018463 6475747 Smal_1794 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002028181.1 2015314 D 391008 CDS YP_002028182.1 194365572 6475748 2018444..2018836 1 NC_011071.1 hypothetical protein 2018836 6475748 Smal_1795 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028182.1 2018444 D 391008 CDS YP_002028183.1 194365573 6475749 2018920..2019606 1 NC_011071.1 KEGG: aeh:Mlg_1709 hypothetical protein; hypothetical protein 2019606 6475749 Smal_1796 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028183.1 2018920 D 391008 CDS YP_002028184.1 194365574 6475750 complement(2019771..2020316) 1 NC_011071.1 KEGG: xcb:XC_2360 hypothetical protein; hypothetical protein 2020316 6475750 Smal_1797 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028184.1 2019771 R 391008 CDS YP_002028185.1 194365575 6475751 complement(2020306..2020872) 1 NC_011071.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2020872 6475751 Smal_1798 Stenotrophomonas maltophilia R551-3 elongation factor P YP_002028185.1 2020306 R 391008 CDS YP_002028186.1 194365576 6475752 complement(2020923..2021693) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_2754 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR 2021693 6475752 Smal_1799 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028186.1 2020923 R 391008 CDS YP_002028187.1 194365577 6475753 complement(2021793..2022689) 1 NC_011071.1 PFAM: pyruvate carboxyltransferase; KEGG: xcv:XCV1897 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 2022689 6475753 Smal_1800 Stenotrophomonas maltophilia R551-3 pyruvate carboxyltransferase YP_002028187.1 2021793 R 391008 CDS YP_002028188.1 194365578 6475754 complement(2022686..2023087) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0736 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 2023087 6475754 Smal_1801 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002028188.1 2022686 R 391008 CDS YP_002028189.1 194365579 6475755 complement(2023090..2023878) 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xcb:XC_2356 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2023878 6475755 Smal_1802 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase/isomerase YP_002028189.1 2023090 R 391008 CDS YP_002028190.1 194365580 6475756 2023998..2024252 1 NC_011071.1 PFAM: FeoA family protein; KEGG: xcb:XC_2355 ferrous iron transport protein; FeoA family protein 2024252 6475756 Smal_1803 Stenotrophomonas maltophilia R551-3 FeoA family protein YP_002028190.1 2023998 D 391008 CDS YP_002028191.1 194365581 6475757 2024249..2026114 1 NC_011071.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: xcv:XCV1901 ferrous iron transport protein FeoB; ferrous iron transport protein B 2026114 6475757 Smal_1804 Stenotrophomonas maltophilia R551-3 ferrous iron transport protein B YP_002028191.1 2024249 D 391008 CDS YP_002028192.1 194365582 6475758 2026114..2026368 1 NC_011071.1 KEGG: xac:XAC1856 hypothetical protein; hypothetical protein 2026368 6475758 Smal_1805 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028192.1 2026114 D 391008 CDS YP_002028193.1 194365583 6475759 complement(2026414..2026875) 1 NC_011071.1 KEGG: fjo:Fjoh_0892 hypothetical protein; hypothetical protein 2026875 6475759 Smal_1806 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028193.1 2026414 R 391008 CDS YP_002028194.1 194365584 6475760 complement(2027034..2027615) 1 NC_011071.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: azo:azo1477 probable NAD(P)H quinone oxidoreductase; NAD(P)H dehydrogenase (quinone) 2027615 6475760 Smal_1807 Stenotrophomonas maltophilia R551-3 NAD(P)H dehydrogenase (quinone) YP_002028194.1 2027034 R 391008 CDS YP_002028195.1 194365585 6475761 complement(2027671..2028066) 1 NC_011071.1 PFAM: regulatory protein MerR; KEGG: azo:azo1478 probable MerR-family transcriptional regulator; MerR family transcriptional regulator 2028066 6475761 Smal_1808 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002028195.1 2027671 R 391008 CDS YP_002028196.1 194365586 6475762 complement(2028071..2028850) 1 NC_011071.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2028850 fabG 6475762 fabG Stenotrophomonas maltophilia R551-3 3-ketoacyl-ACP reductase YP_002028196.1 2028071 R 391008 CDS YP_002028197.1 194365587 6475763 2028923..2029642 1 NC_011071.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2029642 6475763 Smal_1810 Stenotrophomonas maltophilia R551-3 dihydrodipicolinate reductase YP_002028197.1 2028923 D 391008 CDS YP_002028198.1 194365588 6475764 2029944..2031125 1 NC_011071.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2031125 6475764 Smal_1811 Stenotrophomonas maltophilia R551-3 carbamoyl phosphate synthase small subunit YP_002028198.1 2029944 D 391008 CDS YP_002028199.1 194365589 6475765 2031275..2034517 1 NC_011071.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2034517 carB 6475765 carB Stenotrophomonas maltophilia R551-3 carbamoyl phosphate synthase large subunit YP_002028199.1 2031275 D 391008 CDS YP_002028200.1 194365590 6475766 2034514..2034990 1 NC_011071.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2034990 greA 6475766 greA Stenotrophomonas maltophilia R551-3 transcription elongation factor GreA YP_002028200.1 2034514 D 391008 CDS YP_002028201.1 194365591 6475767 2034995..2035912 1 NC_011071.1 KEGG: xom:XOO_2737 regulatory protein; regulatory protein 2035912 6475767 Smal_1814 Stenotrophomonas maltophilia R551-3 regulatory protein YP_002028201.1 2034995 D 391008 CDS YP_002028202.1 194365592 6475768 complement(2036022..2037092) 1 NC_011071.1 PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein 2037092 6475768 Smal_1815 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028202.1 2036022 R 391008 CDS YP_002028203.1 194365593 6475769 complement(2037093..2038136) 1 NC_011071.1 PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein 2038136 6475769 Smal_1816 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028203.1 2037093 R 391008 CDS YP_002028204.1 194365594 6475770 2038259..2040016 1 NC_011071.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: xac:XAC1865 single-stranded-DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 2040016 6475770 Smal_1817 Stenotrophomonas maltophilia R551-3 single-stranded-DNA-specific exonuclease RecJ YP_002028204.1 2038259 D 391008 CDS YP_002028205.1 194365595 6475771 complement(2040100..2041149) 1 NC_011071.1 PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein 2041149 6475771 Smal_1818 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028205.1 2040100 R 391008 CDS YP_002028206.1 194365596 6475772 2041281..2044172 1 NC_011071.1 PFAM: Vault protein inter-alpha-trypsin domain protein; KEGG: rfr:Rfer_2477 hypothetical protein; Vault protein inter-alpha-trypsin domain-containing protein 2044172 6475772 Smal_1819 Stenotrophomonas maltophilia R551-3 Vault protein inter-alpha-trypsin domain-containing protein YP_002028206.1 2041281 D 391008 CDS YP_002028207.1 194365597 6475773 2044515..2045480 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2045480 6475773 Smal_1820 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002028207.1 2044515 D 391008 CDS YP_002028208.1 194365598 6475774 complement(2045516..2046724) 1 NC_011071.1 KEGG: xcv:XCV1913 hypothetical protein; hypothetical protein 2046724 6475774 Smal_1821 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028208.1 2045516 R 391008 CDS YP_002028209.1 194365599 6475775 2046859..2047761 1 NC_011071.1 PFAM: LytTr DNA-binding region; KEGG: xac:XAC1874 regulatory protein; response regulator receiver protein 2047761 6475775 Smal_1822 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028209.1 2046859 D 391008 CDS YP_002028210.1 194365600 6475776 join(2047832..2047906,2047908..2048957) 1 NC_011071.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 2048957 6475776 Smal_1823 Stenotrophomonas maltophilia R551-3 peptide chain release factor 2 YP_002028210.1 2047832 D 391008 CDS YP_002028211.1 194365601 6475777 2049006..2049785 1 NC_011071.1 SMART: helix-turn-helix domain protein; KEGG: rle:RL4049 hypothetical protein; XRE family transcriptional regulator 2049785 6475777 Smal_1824 Stenotrophomonas maltophilia R551-3 XRE family transcriptional regulator YP_002028211.1 2049006 D 391008 CDS YP_002028212.1 194365602 6475778 2050587..2051972 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pst:PSPTO_2660 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2051972 6475778 Smal_1825 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002028212.1 2050587 D 391008 CDS YP_002028213.1 194365603 6475779 2052036..2053676 1 NC_011071.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rle:pRL120271 acetolactate synthase; thiamine pyrophosphate domain-containing TPP-binding protein 2053676 6475779 Smal_1826 Stenotrophomonas maltophilia R551-3 thiamine pyrophosphate domain-containing TPP-binding protein YP_002028213.1 2052036 D 391008 CDS YP_002028214.1 194365604 6475780 2053950..2055461 1 NC_011071.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2055461 lysS 6475780 lysS Stenotrophomonas maltophilia R551-3 lysyl-tRNA synthetase YP_002028214.1 2053950 D 391008 CDS YP_002028215.1 194365605 6475781 2055667..2056806 1 NC_011071.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: xac:XAC1877 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 2056806 6475781 Smal_1828 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated metal dependent phosphohydrolase YP_002028215.1 2055667 D 391008 CDS YP_002028216.1 194365606 6475782 2056808..2059531 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: xcv:XCV1919 sensory/regulatory protein RpfC; multi-sensor hybrid histidine kinase 2059531 6475782 Smal_1829 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002028216.1 2056808 D 391008 CDS YP_002028217.1 194365607 6475783 complement(2059544..2060413) 1 NC_011071.1 regulator of pathogenicity factor RpfF; involved in synthesis of a diffusible signal factor involved in the regulation of extracellular enzymes; enoyl-CoA hydratase 2060413 6475783 Smal_1830 Stenotrophomonas maltophilia R551-3 enoyl-CoA hydratase YP_002028217.1 2059544 R 391008 CDS YP_002028218.1 194365608 6475784 complement(2060615..2062291) 1 NC_011071.1 PFAM: AMP-dependent synthetase and ligase; KEGG: xac:XAC1880 long-chain fatty acyl CoA ligase; putative long-chain fatty acyl CoA ligase 2062291 6475784 Smal_1831 Stenotrophomonas maltophilia R551-3 putative long-chain fatty acyl CoA ligase YP_002028218.1 2060615 R 391008 CDS YP_002028219.1 194365609 6475785 complement(2062514..2064196) 1 NC_011071.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2064196 6475785 Smal_1832 Stenotrophomonas maltophilia R551-3 choline dehydrogenase YP_002028219.1 2062514 R 391008 CDS YP_002028220.1 194365610 6475786 complement(2064299..2065771) 1 NC_011071.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 2065771 6475786 Smal_1833 Stenotrophomonas maltophilia R551-3 betaine aldehyde dehydrogenase YP_002028220.1 2064299 R 391008 CDS YP_002028221.1 194365611 6475787 complement(2065810..2066400) 1 NC_011071.1 TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR; KEGG: pmy:Pmen_0483 transcriptional regulator BetI; TetR family transcriptional regulator 2066400 6475787 Smal_1834 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028221.1 2065810 R 391008 CDS YP_002028222.1 194365612 6475788 2066571..2068121 1 NC_011071.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aci:ACIAD1011 putative choline/carnitine/betaine transporter family protein; choline/carnitine/betaine transporter 2068121 6475788 Smal_1835 Stenotrophomonas maltophilia R551-3 choline/carnitine/betaine transporter YP_002028222.1 2066571 D 391008 CDS YP_002028223.1 194365613 6475789 complement(2068232..2070985) 1 NC_011071.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2070985 6475789 Smal_1836 Stenotrophomonas maltophilia R551-3 aconitate hydratase YP_002028223.1 2068232 R 391008 CDS YP_002028224.1 194365614 6475790 2071287..2071511 1 NC_011071.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: xcb:XC_2328 hypothetical protein; AbrB family transcriptional regulator 2071511 6475790 Smal_1837 Stenotrophomonas maltophilia R551-3 AbrB family transcriptional regulator YP_002028224.1 2071287 D 391008 CDS YP_002028225.1 194365615 6475791 2071518..2071916 1 NC_011071.1 KEGG: xfn:XfasM23_0226 hypothetical protein; hypothetical protein 2071916 6475791 Smal_1838 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028225.1 2071518 D 391008 CDS YP_002028226.1 194365616 6475792 2071956..2074547 1 NC_011071.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2074547 6475792 Smal_1839 Stenotrophomonas maltophilia R551-3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002028226.1 2071956 D 391008 CDS YP_002028227.1 194365617 6475793 2074663..2075079 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC0008 TonB protein; TonB family protein 2075079 6475793 Smal_1840 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002028227.1 2074663 D 391008 CDS YP_002028228.1 194365618 6475794 2075079..2075582 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: xcb:XC_2641 hypothetical protein; TonB family protein 2075582 6475794 Smal_1841 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002028228.1 2075079 D 391008 CDS YP_002028229.1 194365619 6475867 complement(2075636..2076439) 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_2325 beta-ketoadipate enol-lactone hydrolase; alpha/beta hydrolase fold domain-containing protein 2076439 6475867 Smal_1842 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002028229.1 2075636 R 391008 CDS YP_002028230.1 194365620 6475868 complement(2076759..2077832) 1 NC_011071.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2077832 6475868 Smal_1843 Stenotrophomonas maltophilia R551-3 chemotaxis-specific methylesterase YP_002028230.1 2076759 R 391008 CDS YP_002028231.1 194365621 6475869 complement(2077829..2078425) 1 NC_011071.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 2078425 6475869 Smal_1844 Stenotrophomonas maltophilia R551-3 chemoreceptor glutamine deamidase CheD YP_002028231.1 2077829 R 391008 CDS YP_002028232.1 194365622 6475870 complement(2078422..2079291) 1 NC_011071.1 PFAM: MCP methyltransferase CheR-type; KEGG: xac:XAC1890 chemotaxis protein methyltransferase; CheR-type MCP methyltransferase 2079291 6475870 Smal_1845 Stenotrophomonas maltophilia R551-3 CheR-type MCP methyltransferase YP_002028232.1 2078422 R 391008 CDS YP_002028233.1 194365623 6475871 complement(2079329..2081596) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: xcv:XCV1952 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2081596 6475871 Smal_1846 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002028233.1 2079329 R 391008 CDS YP_002028234.1 194365624 6475872 complement(2082327..2084708) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcv:XCV1933 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2084708 6475872 Smal_1847 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002028234.1 2082327 R 391008 CDS YP_002028235.1 194365625 6475873 complement(2084810..2085193) 1 NC_011071.1 KEGG: xcv:XCV1934 putative secreted protein; hypothetical protein 2085193 6475873 Smal_1848 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028235.1 2084810 R 391008 CDS YP_002028236.1 194365626 6475874 complement(2085330..2085821) 1 NC_011071.1 PFAM: CheW domain protein; KEGG: xcb:XC_2318 chemotaxis protein; CheW protein 2085821 6475874 Smal_1849 Stenotrophomonas maltophilia R551-3 CheW protein YP_002028236.1 2085330 R 391008 CDS YP_002028237.1 194365627 6475875 complement(2086026..2086799) 1 NC_011071.1 PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: xcb:XC_2317 hypothetical protein; YcgR family protein 2086799 6475875 Smal_1850 Stenotrophomonas maltophilia R551-3 YcgR family protein YP_002028237.1 2086026 R 391008 CDS YP_002028238.1 194365628 6475876 complement(2086952..2089189) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_2309 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2089189 6475876 Smal_1851 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002028238.1 2086952 R 391008 CDS YP_002028239.1 194365629 6475877 complement(2089582..2091576) 1 NC_011071.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xcb:XC_2303 chemotaxis protein; CheA signal transduction histidine kinase 2091576 6475877 Smal_1852 Stenotrophomonas maltophilia R551-3 CheA signal transduction histidine kinase YP_002028239.1 2089582 R 391008 CDS YP_002028240.1 194365630 6475878 complement(2091622..2091987) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xom:XOO_2692 chemotaxis response regulator; response regulator receiver protein 2091987 6475878 Smal_1853 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028240.1 2091622 R 391008 CDS YP_002028241.1 194365631 6475879 complement(2091984..2092292) 1 NC_011071.1 KEGG: xcb:XC_2301 hypothetical protein; hypothetical protein 2092292 6475879 Smal_1854 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028241.1 2091984 R 391008 CDS YP_002028242.1 194365632 6475880 complement(2092578..2093867) 1 NC_011071.1 PFAM: CheW domain protein; KEGG: xcv:XCV1959 chemotaxis signal transduction protein; CheW protein 2093867 6475880 Smal_1855 Stenotrophomonas maltophilia R551-3 CheW protein YP_002028242.1 2092578 R 391008 CDS YP_002028243.1 194365633 6475881 complement(2093864..2094646) 1 NC_011071.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV1960 putative ParA family ATPase; Cobyrinic acid ac-diamide synthase 2094646 6475881 Smal_1856 Stenotrophomonas maltophilia R551-3 Cobyrinic acid ac-diamide synthase YP_002028243.1 2093864 R 391008 CDS YP_002028244.1 194365634 6475882 complement(2094651..2095667) 1 NC_011071.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 2095667 6475882 Smal_1857 Stenotrophomonas maltophilia R551-3 flagellar motor protein MotD YP_002028244.1 2094651 R 391008 CDS YP_002028245.1 194365635 6475883 complement(2095669..2096409) 1 NC_011071.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 2096409 motC 6475883 motC Stenotrophomonas maltophilia R551-3 flagellar motor protein YP_002028245.1 2095669 R 391008 CDS YP_002028246.1 194365636 6475884 complement(2096557..2098401) 1 NC_011071.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xom:XOO_2483 chemotaxis related protein; CheA signal transduction histidine kinase 2098401 6475884 Smal_1859 Stenotrophomonas maltophilia R551-3 CheA signal transduction histidine kinase YP_002028246.1 2096557 R 391008 CDS YP_002028247.1 194365637 6475885 complement(2098404..2099009) 1 NC_011071.1 KEGG: xcb:XC_2283 chemotaxis related protein; putative chemotaxis phosphatase, CheZ 2099009 6475885 Smal_1860 Stenotrophomonas maltophilia R551-3 putative chemotaxis phosphatase, CheZ YP_002028247.1 2098404 R 391008 CDS YP_002028248.1 194365638 6475886 complement(2099009..2099389) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xom:XOO_2481 chemotaxis protein; response regulator receiver protein 2099389 6475886 Smal_1861 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028248.1 2099009 R 391008 CDS YP_002028249.1 194365639 6475887 complement(2099459..2100202) 1 NC_011071.1 KEGG: xcb:XC_2281 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma-28 subunit FliA/WhiG 2100202 6475887 Smal_1862 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma-28 subunit FliA/WhiG YP_002028249.1 2099459 R 391008 CDS YP_002028250.1 194365640 6475888 complement(2100199..2101086) 1 NC_011071.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcb:XC_2280 flagellar biosynthesis switch protein; Cobyrinic acid ac-diamide synthase 2101086 6475888 Smal_1863 Stenotrophomonas maltophilia R551-3 Cobyrinic acid ac-diamide synthase YP_002028250.1 2100199 R 391008 CDS YP_002028251.1 194365641 6475889 complement(2101073..2102701) 1 NC_011071.1 Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2102701 6475889 Smal_1864 Stenotrophomonas maltophilia R551-3 flagellar biosynthesis regulator FlhF YP_002028251.1 2101073 R 391008 CDS YP_002028252.1 194365642 6475890 complement(2102847..2104955) 1 NC_011071.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2104955 flhA 6475890 flhA Stenotrophomonas maltophilia R551-3 flagellar biosynthesis protein FlhA YP_002028252.1 2102847 R 391008 CDS YP_002028253.1 194365643 6475891 complement(2104952..2106082) 1 NC_011071.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2106082 flhB 6475891 flhB Stenotrophomonas maltophilia R551-3 flagellar biosynthesis protein FlhB YP_002028253.1 2104952 R 391008 CDS YP_002028254.1 194365644 6475892 complement(2106201..2108333) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pau:PA14_42220 putative integral membrane sensor domain; diguanylate cyclase/phosphodiesterase 2108333 6475892 Smal_1867 Stenotrophomonas maltophilia R551-3 diguanylate cyclase/phosphodiesterase YP_002028254.1 2106201 R 391008 CDS YP_002028255.1 194365645 6475893 complement(2108498..2109289) 1 NC_011071.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: xcb:XC_2273 flagellar biosynthetic protein; flagellar biosynthetic protein FliR 2109289 6475893 Smal_1868 Stenotrophomonas maltophilia R551-3 flagellar biosynthetic protein FliR YP_002028255.1 2108498 R 391008 CDS YP_002028256.1 194365646 6475894 complement(2109303..2109572) 1 NC_011071.1 PFAM: export protein FliQ family 3; KEGG: xom:XOO_2471 flagellar biosynthesis; export protein FliQ family 3 2109572 6475894 Smal_1869 Stenotrophomonas maltophilia R551-3 export protein FliQ family 3 YP_002028256.1 2109303 R 391008 CDS YP_002028257.1 194365647 6475895 complement(2109655..2110434) 1 NC_011071.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2110434 fliP 6475895 fliP Stenotrophomonas maltophilia R551-3 flagellar biosynthesis protein FliP YP_002028257.1 2109655 R 391008 CDS YP_002028258.1 194365648 6475896 complement(2110436..2110855) 1 NC_011071.1 PFAM: flagellar biosynthesis protein FliO; KEGG: xcb:XC_2269 flagellar protein; flagellar biosynthesis protein FliO 2110855 6475896 Smal_1871 Stenotrophomonas maltophilia R551-3 flagellar biosynthesis protein FliO YP_002028258.1 2110436 R 391008 CDS YP_002028259.1 194365649 6475897 complement(2110852..2111187) 1 NC_011071.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: xac:XAC1946 flagellar protein; flagellar motor switch protein FliN 2111187 6475897 Smal_1872 Stenotrophomonas maltophilia R551-3 flagellar motor switch protein FliN YP_002028259.1 2110852 R 391008 CDS YP_002028260.1 194365650 6475898 complement(2111184..2112188) 1 NC_011071.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2112188 fliM 6475898 fliM Stenotrophomonas maltophilia R551-3 flagellar motor switch protein FliM YP_002028260.1 2111184 R 391008 CDS YP_002028261.1 194365651 6475899 complement(2112199..2112714) 1 NC_011071.1 PFAM: flagellar basal body-associated protein FliL; KEGG: xcv:XCV1992 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 2112714 6475899 Smal_1874 Stenotrophomonas maltophilia R551-3 flagellar basal body-associated protein FliL YP_002028261.1 2112199 R 391008 CDS YP_002028262.1 194365652 6475900 complement(2112887..2114056) 1 NC_011071.1 PFAM: flagellar hook-length control protein; KEGG: xcb:XC_2265 flagellar protein; flagellar hook-length control protein 2114056 6475900 Smal_1875 Stenotrophomonas maltophilia R551-3 flagellar hook-length control protein YP_002028262.1 2112887 R 391008 CDS YP_002028263.1 194365653 6475901 complement(2114056..2114523) 1 NC_011071.1 TIGRFAM: flagellar export protein FliJ; KEGG: xcb:XC_2264 flagellar FliJ protein; flagellar export protein FliJ 2114523 6475901 Smal_1876 Stenotrophomonas maltophilia R551-3 flagellar export protein FliJ YP_002028263.1 2114056 R 391008 CDS YP_002028264.1 194365654 6475902 complement(2114527..2115912) 1 NC_011071.1 KEGG: xcb:XC_2263 flagellar protein; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase 2115912 6475902 Smal_1877 Stenotrophomonas maltophilia R551-3 FliI/YscN family ATPase YP_002028264.1 2114527 R 391008 CDS YP_002028265.1 194365655 6475903 complement(2115909..2116550) 1 NC_011071.1 PFAM: flagellar assembly protein FliH; KEGG: xac:XAC1952 flagellar protein; flagellar assembly protein FliH 2116550 6475903 Smal_1878 Stenotrophomonas maltophilia R551-3 flagellar assembly protein FliH YP_002028265.1 2115909 R 391008 CDS YP_002028266.1 194365656 6475904 complement(2116547..2117548) 1 NC_011071.1 PFAM: flagellar motor switch protein FliG; KEGG: xac:XAC1953 flagellar protein; flagellar motor switch protein FliG 2117548 6475904 Smal_1879 Stenotrophomonas maltophilia R551-3 flagellar motor switch protein FliG YP_002028266.1 2116547 R 391008 CDS YP_002028267.1 194365657 6475905 complement(2117541..2119187) 1 NC_011071.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2119187 fliF 6475905 fliF Stenotrophomonas maltophilia R551-3 flagellar MS-ring protein YP_002028267.1 2117541 R 391008 CDS YP_002028268.1 194365658 6475906 complement(2119200..2119565) 1 NC_011071.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: xoo:XOO2600 flagellar protein; flagellar hook-basal body complex subunit FliE 2119565 6475906 Smal_1881 Stenotrophomonas maltophilia R551-3 flagellar hook-basal body complex subunit FliE YP_002028268.1 2119200 R 391008 CDS YP_002028269.1 194365659 6475907 complement(2120004..2120420) 1 NC_011071.1 KEGG: cvi:CV_1372 hypothetical protein; hypothetical protein 2120420 6475907 Smal_1882 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028269.1 2120004 R 391008 CDS YP_002028270.1 194365660 6475908 complement(2120618..2122123) 1 NC_011071.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: xom:XOO_2447 transcriptional regulator; Fis family sigma-54 specific transcriptional regulator 2122123 6475908 Smal_1883 Stenotrophomonas maltophilia R551-3 Fis family sigma-54 specific transcriptional regulator YP_002028270.1 2120618 R 391008 CDS YP_002028271.1 194365661 6475909 complement(2122120..2122497) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xac:XAC1968 response regulator; response regulator receiver protein 2122497 6475909 Smal_1884 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028271.1 2122120 R 391008 CDS YP_002028272.1 194365662 6475910 complement(2122512..2123921) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: xac:XAC1969 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN 2123921 6475910 Smal_1885 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma-54 subunit RpoN YP_002028272.1 2122512 R 391008 CDS YP_002028273.1 194365663 6475911 2124335..2125279 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 2125279 6475911 Smal_1886 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002028273.1 2124335 D 391008 CDS YP_002028274.1 194365664 6475912 2125364..2126308 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 2126308 6475912 Smal_1887 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002028274.1 2125364 D 391008 CDS YP_002028275.1 194365665 6475913 complement(2126430..2127068) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcv:XCV2017 two-component system response regulator, LuxR family; two component LuxR family transcriptional regulator 2127068 6475913 Smal_1888 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002028275.1 2126430 R 391008 CDS YP_002028276.1 194365666 6475914 complement(2127154..2127732) 1 NC_011071.1 KEGG: xom:XOO_2443 hypothetical protein; hypothetical protein 2127732 6475914 Smal_1889 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028276.1 2127154 R 391008 CDS YP_002028277.1 194365667 6475915 complement(2127729..2128022) 1 NC_011071.1 KEGG: xac:XAC1972 hypothetical protein; hypothetical protein 2128022 6475915 Smal_1890 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028277.1 2127729 R 391008 CDS YP_002028278.1 194365668 6475916 complement(2128019..2128435) 1 NC_011071.1 PFAM: flagellar protein FliS; KEGG: xcv:XCV2020 flagellin-specific chaperone FliS; flagellar protein FliS 2128435 6475916 Smal_1891 Stenotrophomonas maltophilia R551-3 flagellar protein FliS YP_002028278.1 2128019 R 391008 CDS YP_002028279.1 194365669 6475917 complement(2128566..2129984) 1 NC_011071.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: ppu:PP_4376 flagellar cap protein FliD; flagellar hook-associated 2 domain-containing protein 2129984 6475917 Smal_1892 Stenotrophomonas maltophilia R551-3 flagellar hook-associated 2 domain-containing protein YP_002028279.1 2128566 R 391008 CDS YP_002028280.1 194365670 6475918 complement(2130426..2131604) 1 NC_011071.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2131604 6475918 Smal_1893 Stenotrophomonas maltophilia R551-3 flagellin YP_002028280.1 2130426 R 391008 CDS YP_002028281.1 194365671 6475919 complement(2131691..2132878) 1 NC_011071.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2132878 6475919 Smal_1894 Stenotrophomonas maltophilia R551-3 flagellin YP_002028281.1 2131691 R 391008 CDS YP_002028282.1 194365672 6475920 complement(2132951..2134168) 1 NC_011071.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin 2134168 6475920 Smal_1895 Stenotrophomonas maltophilia R551-3 flagellin YP_002028282.1 2132951 R 391008 CDS YP_002028283.1 194365673 6475921 complement(2134586..2135788) 1 NC_011071.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 2135788 flgL 6475921 flgL Stenotrophomonas maltophilia R551-3 flagellar hook-associated protein FlgL YP_002028283.1 2134586 R 391008 CDS YP_002028284.1 194365674 6475922 complement(2135785..2137665) 1 NC_011071.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 2137665 flgK 6475922 flgK Stenotrophomonas maltophilia R551-3 flagellar hook-associated protein FlgK YP_002028284.1 2135785 R 391008 CDS YP_002028285.1 194365675 6475923 complement(2137674..2138873) 1 NC_011071.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2138873 flgJ 6475923 flgJ Stenotrophomonas maltophilia R551-3 flagellar rod assembly protein/muramidase FlgJ YP_002028285.1 2137674 R 391008 CDS YP_002028286.1 194365676 6475924 complement(2138875..2140005) 1 NC_011071.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2140005 flgI 6475924 flgI Stenotrophomonas maltophilia R551-3 flagellar basal body P-ring protein YP_002028286.1 2138875 R 391008 CDS YP_002028287.1 194365677 6475925 complement(2140014..2140706) 1 NC_011071.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 2140706 flgH 6475925 flgH Stenotrophomonas maltophilia R551-3 flagellar basal body L-ring protein YP_002028287.1 2140014 R 391008 CDS YP_002028288.1 194365678 6475926 complement(2140729..2141514) 1 NC_011071.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2141514 flgG 6475926 flgG Stenotrophomonas maltophilia R551-3 flagellar basal body rod protein FlgG YP_002028288.1 2140729 R 391008 CDS YP_002028289.1 194365679 6475927 complement(2141617..2142366) 1 NC_011071.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2142366 flgF 6475927 flgF Stenotrophomonas maltophilia R551-3 flagellar basal body rod protein FlgF YP_002028289.1 2141617 R 391008 CDS YP_002028290.1 194365680 6475928 complement(2142399..2143622) 1 NC_011071.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2143622 flgE 6475928 flgE Stenotrophomonas maltophilia R551-3 flagellar hook protein FlgE YP_002028290.1 2142399 R 391008 CDS YP_002028291.1 194365681 6475929 complement(2143655..2144338) 1 NC_011071.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 2144338 flgD 6475929 flgD Stenotrophomonas maltophilia R551-3 flagellar basal body rod modification protein YP_002028291.1 2143655 R 391008 CDS YP_002028292.1 194365682 6475930 complement(2144362..2144769) 1 NC_011071.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2144769 flgC 6475930 flgC Stenotrophomonas maltophilia R551-3 flagellar basal body rod protein FlgC YP_002028292.1 2144362 R 391008 CDS YP_002028293.1 194365683 6475931 complement(2144773..2145168) 1 NC_011071.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 2145168 flgB 6475931 flgB Stenotrophomonas maltophilia R551-3 flagellar basal body rod protein FlgB YP_002028293.1 2144773 R 391008 CDS YP_002028294.1 194365684 6475932 complement(2145318..2146262) 1 NC_011071.1 PFAM: response regulator receiver; CheW domain protein; KEGG: xcb:XC_2233 chemotaxis protein; response regulator receiver modulated CheW protein 2146262 6475932 Smal_1907 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated CheW protein YP_002028294.1 2145318 R 391008 CDS YP_002028295.1 194365685 6475933 2146474..2147130 1 NC_011071.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2147130 flgA 6475933 flgA Stenotrophomonas maltophilia R551-3 flagellar basal body P-ring biosynthesis protein FlgA YP_002028295.1 2146474 D 391008 CDS YP_002028296.1 194365686 6475934 2147206..2147511 1 NC_011071.1 KEGG: xcb:XC_2231 flagellar protein; putative anti-sigma-28 factor FlgM 2147511 6475934 Smal_1909 Stenotrophomonas maltophilia R551-3 putative anti-sigma-28 factor FlgM YP_002028296.1 2147206 D 391008 CDS YP_002028297.1 194365687 6475935 2147508..2147846 1 NC_011071.1 KEGG: xac:XAC1990 hypothetical protein; hypothetical protein 2147846 6475935 Smal_1910 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028297.1 2147508 D 391008 CDS YP_002028298.1 194365688 6475936 2147938..2149158 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; KEGG: xom:XOO_2423 histidine kinase; histidine kinase 2149158 6475936 Smal_1911 Stenotrophomonas maltophilia R551-3 histidine kinase YP_002028298.1 2147938 D 391008 CDS YP_002028299.1 194365689 6475937 complement(2149252..2151024) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xom:XOO_2422 C-di-GMP phosphodiesterase A; cyclic nucleotide-binding protein 2151024 6475937 Smal_1912 Stenotrophomonas maltophilia R551-3 cyclic nucleotide-binding protein YP_002028299.1 2149252 R 391008 CDS YP_002028300.1 194365690 6475938 complement(2151029..2153131) 1 NC_011071.1 KEGG: xcb:XC_2227 HrpX related protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2153131 6475938 Smal_1913 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor signal transduction histidine kinase YP_002028300.1 2151029 R 391008 CDS YP_002028301.1 194365691 6475939 2153263..2156022 1 NC_011071.1 KEGG: xcv:XCV2041 putative signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2156022 6475939 Smal_1914 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_002028301.1 2153263 D 391008 CDS YP_002028302.1 194365692 6475940 complement(2156140..2156667) 1 NC_011071.1 KEGG: xcb:XC_3797 hypothetical protein; hypothetical protein 2156667 6475940 Smal_1915 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028302.1 2156140 R 391008 CDS YP_002028303.1 194365693 6475941 complement(2156735..2157049) 1 NC_011071.1 KEGG: scl:sce2419 putative DnaJ class molecular chaperone; hypothetical protein 2157049 6475941 Smal_1916 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028303.1 2156735 R 391008 CDS YP_002028304.1 194365694 6475942 complement(2157055..2158245) 1 NC_011071.1 PFAM: chemotaxis sensory transducer; KEGG: xac:XAC1996 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2158245 6475942 Smal_1917 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002028304.1 2157055 R 391008 CDS YP_002028305.1 194365695 6475943 complement(2158411..2159025) 1 NC_011071.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2159025 6475943 Smal_1918 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028305.1 2158411 R 391008 CDS YP_002028306.1 194365696 6475944 complement(2159022..2160164) 1 NC_011071.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2160164 mnmA 6475944 mnmA Stenotrophomonas maltophilia R551-3 tRNA-specific 2-thiouridylase MnmA YP_002028306.1 2159022 R 391008 CDS YP_002028307.1 194365697 6475945 complement(2160161..2160622) 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: xcv:XCV2047 NUDIX hydrolase family protein; NUDIX hydrolase 2160622 6475945 Smal_1920 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002028307.1 2160161 R 391008 CDS YP_002028308.1 194365698 6475946 complement(2160624..2161097) 1 NC_011071.1 KEGG: tel:tlr0323 unknown protein; hypothetical protein 2161097 6475946 Smal_1921 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028308.1 2160624 R 391008 CDS YP_002028309.1 194365699 6475947 2161210..2161536 1 NC_011071.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: xcv:XCV2048 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2161536 6475947 Smal_1922 Stenotrophomonas maltophilia R551-3 ATP-dependent Clp protease adaptor protein ClpS YP_002028309.1 2161210 D 391008 CDS YP_002028310.1 194365700 6475948 complement(2161617..2162429) 1 NC_011071.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: spe:Spro_2227 aminoglycoside/hydroxyurea antibiotic resistance kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 2162429 6475948 Smal_1923 Stenotrophomonas maltophilia R551-3 aminoglycoside/hydroxyurea antibiotic resistance kinase YP_002028310.1 2161617 R 391008 CDS YP_002028311.1 194365701 6476031 2162568..2164853 1 NC_011071.1 KEGG: xac:XAC2001 ATP-dependent Clp protease subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2164853 6476031 Smal_1924 Stenotrophomonas maltophilia R551-3 ATP-dependent Clp protease ATP-binding protein ClpA YP_002028311.1 2162568 D 391008 CDS YP_002028312.1 194365702 6476032 complement(2164929..2165312) 1 NC_011071.1 hypothetical protein 2165312 6476032 Smal_1925 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028312.1 2164929 R 391008 CDS YP_002028313.1 194365703 6476033 complement(2165441..2165713) 1 NC_011071.1 hypothetical protein 2165713 6476033 Smal_1926 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028313.1 2165441 R 391008 CDS YP_002028314.1 194365704 6476034 complement(2165885..2166103) 1 NC_011071.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2166103 infA 6476034 infA Stenotrophomonas maltophilia R551-3 translation initiation factor IF-1 YP_002028314.1 2165885 R 391008 CDS YP_002028315.1 194365705 6476035 complement(2166190..2166930) 1 NC_011071.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2166930 aat 6476035 aat Stenotrophomonas maltophilia R551-3 leucyl/phenylalanyl-tRNA--protein transferase YP_002028315.1 2166190 R 391008 CDS YP_002028316.1 194365706 6476036 2167003..2168271 1 NC_011071.1 KEGG: ccv:CCV52592_1566 hypothetical protein; hypothetical protein 2168271 6476036 Smal_1929 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028316.1 2167003 D 391008 CDS YP_002028317.1 194365707 6476037 complement(2168449..2169573) 1 NC_011071.1 PFAM: protein of unknown function DUF482; KEGG: xom:XOO_2407 hypothetical protein; hypothetical protein 2169573 6476037 Smal_1930 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028317.1 2168449 R 391008 CDS YP_002028318.1 194365708 6476038 2169742..2171262 1 NC_011071.1 PFAM: cell wall hydrolase/autolysin; KEGG: xac:XAC3279 hypothetical protein; cell wall hydrolase/autolysin 2171262 6476038 Smal_1931 Stenotrophomonas maltophilia R551-3 cell wall hydrolase/autolysin YP_002028318.1 2169742 D 391008 CDS YP_002028319.1 194365709 6476039 complement(2171344..2172315) 1 NC_011071.1 KEGG: xcb:XC_2214 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 2172315 6476039 Smal_1932 Stenotrophomonas maltophilia R551-3 thioredoxin reductase YP_002028319.1 2171344 R 391008 CDS YP_002028320.1 194365710 6476040 2172548..2174908 1 NC_011071.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: xcb:XC_2213 cell division protein; cell division protein FtsK 2174908 6476040 Smal_1933 Stenotrophomonas maltophilia R551-3 cell division protein FtsK YP_002028320.1 2172548 D 391008 CDS YP_002028321.1 194365711 6476041 2174948..2176891 1 NC_011071.1 KEGG: spe:Spro_2485 hypothetical protein; hypothetical protein 2176891 6476041 Smal_1934 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028321.1 2174948 D 391008 CDS YP_002028322.1 194365712 6476042 2177003..2177641 1 NC_011071.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2177641 lolA 6476042 lolA Stenotrophomonas maltophilia R551-3 outer-membrane lipoprotein carrier protein YP_002028322.1 2177003 D 391008 CDS YP_002028323.1 194365713 6476043 2177876..2179237 1 NC_011071.1 PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcb:XC_2209 recombination factor protein RarA; recombination factor protein RarA 2179237 6476043 Smal_1936 Stenotrophomonas maltophilia R551-3 recombination factor protein RarA YP_002028323.1 2177876 D 391008 CDS YP_002028324.1 194365714 6476044 2179436..2179798 1 NC_011071.1 PFAM: protein of unknown function DUF805; KEGG: nar:Saro_1148 protein of unknown function DUF805; hypothetical protein 2179798 6476044 Smal_1937 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028324.1 2179436 D 391008 CDS YP_002028325.1 194365715 6476045 complement(2179872..2180246) 1 NC_011071.1 KEGG: pen:PSEEN4324 hypothetical protein; hypothetical protein 2180246 6476045 Smal_1938 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028325.1 2179872 R 391008 CDS YP_002028326.1 194365716 6476046 2180529..2181557 1 NC_011071.1 PFAM: putative esterase; KEGG: ppw:PputW619_0583 putative esterase; putative esterase 2181557 6476046 Smal_1939 Stenotrophomonas maltophilia R551-3 putative esterase YP_002028326.1 2180529 D 391008 CDS YP_002028327.1 194365717 6476047 2181680..2183056 1 NC_011071.1 KEGG: pde:Pden_2566 hypothetical protein; hypothetical protein 2183056 6476047 Smal_1940 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028327.1 2181680 D 391008 CDS YP_002028328.1 194365718 6476048 2183108..2184157 1 NC_011071.1 PFAM: periplasmic binding protein; KEGG: cau:Caur_2428 periplasmic binding protein; periplasmic binding protein 2184157 6476048 Smal_1941 Stenotrophomonas maltophilia R551-3 periplasmic binding protein YP_002028328.1 2183108 D 391008 CDS YP_002028329.1 194365719 6476049 2184154..2185197 1 NC_011071.1 PFAM: transport system permease protein; KEGG: tfu:Tfu_2385 FecCD-family membrane transport protein; transport system permease 2185197 6476049 Smal_1942 Stenotrophomonas maltophilia R551-3 transport system permease YP_002028329.1 2184154 D 391008 CDS YP_002028330.1 194365720 6476050 2185194..2185955 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa29260 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2185955 6476050 Smal_1943 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028330.1 2185194 D 391008 CDS YP_002028331.1 194365721 6476051 2186020..2186769 1 NC_011071.1 hypothetical protein 2186769 6476051 Smal_1944 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028331.1 2186020 D 391008 CDS YP_002028332.1 194365722 6476052 2187210..2189246 1 NC_011071.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: syn:sll1098 elongation factor EF-G 2; translation elongation factor G 2189246 6476052 Smal_1945 Stenotrophomonas maltophilia R551-3 translation elongation factor G YP_002028332.1 2187210 D 391008 CDS YP_002028333.1 194365723 6476053 2189478..2189750 1 NC_011071.1 hypothetical protein 2189750 6476053 Smal_1946 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028333.1 2189478 D 391008 CDS YP_002028334.1 194365724 6476054 2189861..2190616 1 NC_011071.1 PFAM: SapC family protein; KEGG: bav:BAV1948 SapC-related protein; SapC family protein 2190616 6476054 Smal_1947 Stenotrophomonas maltophilia R551-3 SapC family protein YP_002028334.1 2189861 D 391008 CDS YP_002028335.1 194365725 6476055 complement(2190617..2192800) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cvi:CV_2400 sensor protein EvgS precursor; histidine kinase 2192800 6476055 Smal_1948 Stenotrophomonas maltophilia R551-3 histidine kinase YP_002028335.1 2190617 R 391008 CDS YP_002028336.1 194365726 6476056 complement(2192941..2193567) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_2835 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2193567 6476056 Smal_1949 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002028336.1 2192941 R 391008 CDS YP_002028337.1 194365727 6476057 complement(2193737..2194270) 1 NC_011071.1 PFAM: Lipocalin family protein; KEGG: xom:XOO_0248 outer membrane lipoprotein; lipocalin family protein 2194270 6476057 Smal_1950 Stenotrophomonas maltophilia R551-3 lipocalin family protein YP_002028337.1 2193737 R 391008 CDS YP_002028338.1 194365728 6476058 complement(2194279..2195352) 1 NC_011071.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2913 hypothetical protein; type 11 methyltransferase 2195352 6476058 Smal_1951 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002028338.1 2194279 R 391008 CDS YP_002028339.1 194365729 6476059 complement(2195349..2196134) 1 NC_011071.1 PFAM: protein of unknown function DUF1295; KEGG: xcb:XC_2912 hypothetical protein; hypothetical protein 2196134 6476059 Smal_1952 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028339.1 2195349 R 391008 CDS YP_002028340.1 194365730 6476060 complement(2196131..2196691) 1 NC_011071.1 KEGG: xom:XOO_1811 hypothetical protein; hypothetical protein 2196691 6476060 Smal_1953 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028340.1 2196131 R 391008 CDS YP_002028341.1 194365731 6476061 complement(2196681..2197940) 1 NC_011071.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2910 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2197940 6476061 Smal_1954 Stenotrophomonas maltophilia R551-3 cyclopropane-fatty-acyl-phospholipid synthase YP_002028341.1 2196681 R 391008 CDS YP_002028342.1 194365732 6476062 complement(2197937..2198704) 1 NC_011071.1 PFAM: protein of unknown function DUF1365; KEGG: xcb:XC_2909 hypothetical protein; hypothetical protein 2198704 6476062 Smal_1955 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028342.1 2197937 R 391008 CDS YP_002028343.1 194365733 6476063 complement(2198701..2199978) 1 NC_011071.1 PFAM: amine oxidase; KEGG: xcb:XC_2908 dehydrogenase; amine oxidase 2199978 6476063 Smal_1956 Stenotrophomonas maltophilia R551-3 amine oxidase YP_002028343.1 2198701 R 391008 CDS YP_002028344.1 194365734 6476064 complement(2199980..2200930) 1 NC_011071.1 PFAM: fatty acid desaturase; KEGG: xcb:XC_2907 delta 9 acyl-lipid fatty acid desaturase; stearoyl-CoA 9-desaturase 2200930 6476064 Smal_1957 Stenotrophomonas maltophilia R551-3 stearoyl-CoA 9-desaturase YP_002028344.1 2199980 R 391008 CDS YP_002028345.1 194365735 6476065 complement(2201012..2201779) 1 NC_011071.1 KEGG: xcb:XC_2903 hypothetical protein; hypothetical protein 2201779 6476065 Smal_1958 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028345.1 2201012 R 391008 CDS YP_002028346.1 194365736 6476066 2201910..2202533 1 NC_011071.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2202533 6476066 Smal_1959 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma factor RpoE YP_002028346.1 2201910 D 391008 CDS YP_002028347.1 194365737 6476067 2202566..2203210 1 NC_011071.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: psp:PSPPH_0926 transcriptional activator ChrR; anti-ECF sigma factor ChrR 2203210 6476067 Smal_1960 Stenotrophomonas maltophilia R551-3 anti-ECF sigma factor ChrR YP_002028347.1 2202566 D 391008 CDS YP_002028348.1 194365738 6476068 2203232..2203915 1 NC_011071.1 KEGG: rpe:RPE_4489 hypothetical protein; hypothetical protein 2203915 6476068 Smal_1961 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028348.1 2203232 D 391008 CDS YP_002028349.1 194365739 6476069 complement(2203945..2204430) 1 NC_011071.1 PFAM: TspO/MBR family protein; KEGG: net:Neut_1064 TspO and MBR like proteins; TspO and MBR-like protein 2204430 6476069 Smal_1962 Stenotrophomonas maltophilia R551-3 TspO and MBR-like protein YP_002028349.1 2203945 R 391008 CDS YP_002028350.1 194365740 6476070 complement(2204503..2206698) 1 NC_011071.1 KEGG: xcb:XC_0551 hypothetical protein; hypothetical protein 2206698 6476070 Smal_1963 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028350.1 2204503 R 391008 CDS YP_002028351.1 194365741 6476071 2206831..2207310 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_1642 acetyltransferase; N-acetyltransferase GCN5 2207310 6476071 Smal_1964 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028351.1 2206831 D 391008 CDS YP_002028352.1 194365742 6476072 complement(2207385..2207993) 1 NC_011071.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_C7380 (acyl-carrier protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 2207993 6476072 Smal_1965 Stenotrophomonas maltophilia R551-3 NAD(P)H dehydrogenase (quinone) YP_002028352.1 2207385 R 391008 CDS YP_002028353.1 194365743 6476073 2208300..2208722 1 NC_011071.1 PFAM: DoxX family protein; KEGG: neu:NE1546 hypothetical protein; DoxX family protein 2208722 6476073 Smal_1966 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002028353.1 2208300 D 391008 CDS YP_002028354.1 194365744 6476074 2208812..2209705 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_0040 transcriptional regulator LysR family; LysR family transcriptional regulator 2209705 6476074 Smal_1967 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028354.1 2208812 D 391008 CDS YP_002028355.1 194365745 6476075 2209872..2210744 1 NC_011071.1 PFAM: Pirin domain protein; KEGG: cvi:CV_3253 probable pirin-related protein; Pirin domain-containing protein 2210744 6476075 Smal_1968 Stenotrophomonas maltophilia R551-3 Pirin domain-containing protein YP_002028355.1 2209872 D 391008 CDS YP_002028356.1 194365746 6476076 complement(2210785..2211633) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sus:Acid_0395 transcriptional regulator, fis family; AraC family transcriptional regulator 2211633 6476076 Smal_1969 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028356.1 2210785 R 391008 CDS YP_002028357.1 194365747 6476077 2211724..2212185 1 NC_011071.1 KEGG: mmr:Mmar10_2831 hypothetical protein; hypothetical protein 2212185 6476077 Smal_1970 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028357.1 2211724 D 391008 CDS YP_002028358.1 194365748 6476078 complement(2212577..2213482) 1 NC_011071.1 KEGG: xcv:XCVd0070 putative cointegrate resolution protein T; putative cointegrate resolution protein T 2213482 6476078 Smal_1971 Stenotrophomonas maltophilia R551-3 putative cointegrate resolution protein T YP_002028358.1 2212577 R 391008 CDS YP_002028359.1 194365749 6476079 2213586..2214665 1 NC_011071.1 PFAM: integrase family protein; KEGG: xcv:XCVd0071 phage integrase family protein; integrase family protein 2214665 6476079 Smal_1972 Stenotrophomonas maltophilia R551-3 integrase family protein YP_002028359.1 2213586 D 391008 CDS YP_002028360.1 194365750 6476080 2214814..2216661 1 NC_011071.1 KEGG: hsl:OE2743F hypothetical protein; hypothetical protein 2216661 6476080 Smal_1973 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028360.1 2214814 D 391008 CDS YP_002028361.1 194365751 6476081 2216658..2218235 1 NC_011071.1 KEGG: rpd:RPD_3631 conserved hypothetical protein, interruption-N; hypothetical protein 2218235 6476081 Smal_1974 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028361.1 2216658 D 391008 CDS YP_002028362.1 194365752 6476082 complement(2218340..2219203) 1 NC_011071.1 KEGG: pat:Patl_1415 hypothetical protein; hypothetical protein 2219203 6476082 Smal_1975 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028362.1 2218340 R 391008 CDS YP_002028363.1 194365753 6476083 complement(2219739..2220941) 1 NC_011071.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bav:BAV1573 chromate transporter; chromate transporter 2220941 6476083 Smal_1976 Stenotrophomonas maltophilia R551-3 chromate transporter YP_002028363.1 2219739 R 391008 CDS YP_002028364.1 194365754 6476084 complement(2220996..2221415) 1 NC_011071.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: xau:Xaut_0876 arsenate reductase; arsenate reductase 2221415 6476084 Smal_1977 Stenotrophomonas maltophilia R551-3 arsenate reductase YP_002028364.1 2220996 R 391008 CDS YP_002028365.1 194365755 6476085 complement(2221412..2222152) 1 NC_011071.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bxe:Bxe_B0301 putative arsinic resistance protein ArsH; arsenical resistance protein ArsH 2222152 6476085 Smal_1978 Stenotrophomonas maltophilia R551-3 arsenical resistance protein ArsH YP_002028365.1 2221412 R 391008 CDS YP_002028366.1 194365756 6476086 2222193..2222507 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: rme:Rmet_0333 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2222507 6476086 Smal_1979 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002028366.1 2222193 D 391008 CDS YP_002028367.1 194365757 6476087 2222532..2223023 1 NC_011071.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rle:RL2884 putative arsenate reductase; protein tyrosine phosphatase 2223023 6476087 Smal_1980 Stenotrophomonas maltophilia R551-3 protein tyrosine phosphatase YP_002028367.1 2222532 D 391008 CDS YP_002028368.1 194365758 6476088 2223044..2224102 1 NC_011071.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: oan:Oant_3198 arsenical-resistance protein; arsenical-resistance protein 2224102 6476088 Smal_1981 Stenotrophomonas maltophilia R551-3 arsenical-resistance protein YP_002028368.1 2223044 D 391008 CDS YP_002028369.1 194365759 6476089 2224106..2225092 1 NC_011071.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_2214 thioredoxin reductase; thioredoxin reductase 2225092 6476089 Smal_1982 Stenotrophomonas maltophilia R551-3 thioredoxin reductase YP_002028369.1 2224106 D 391008 CDS YP_002028370.1 194365760 6476090 2225117..2226202 1 NC_011071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: psa:PST_2095 monooxygenase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2226202 6476090 Smal_1983 Stenotrophomonas maltophilia R551-3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002028370.1 2225117 D 391008 CDS YP_002028371.1 194365761 6476091 complement(2226163..2226696) 1 NC_011071.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: psa:PST_0236 arsenate reductase, putative; protein tyrosine phosphatase 2226696 6476091 Smal_1984 Stenotrophomonas maltophilia R551-3 protein tyrosine phosphatase YP_002028371.1 2226163 R 391008 CDS YP_002028372.1 194365762 6476092 complement(2227127..2227669) 1 NC_011071.1 KEGG: cya:CYA_1240 cytochrome c assembly protein; hypothetical protein 2227669 6476092 Smal_1985 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028372.1 2227127 R 391008 CDS YP_002028373.1 194365763 6476093 2227837..2228592 1 NC_011071.1 KEGG: rso:RSc0994 probable transmembrane protein; putative transmembrane protein 2228592 6476093 Smal_1986 Stenotrophomonas maltophilia R551-3 putative transmembrane protein YP_002028373.1 2227837 D 391008 CDS YP_002028374.1 194365764 6476094 2229049..2229405 1 NC_011071.1 hypothetical protein 2229405 6476094 Smal_1987 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028374.1 2229049 D 391008 CDS YP_002028375.1 194365765 6476095 2229646..2229876 1 NC_011071.1 hypothetical protein 2229876 6476095 Smal_1988 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028375.1 2229646 D 391008 CDS YP_002028376.1 194365766 6476096 complement(2229981..2230607) 1 NC_011071.1 KEGG: xcb:XC_1389 hypothetical protein; hypothetical protein 2230607 6476096 Smal_1989 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028376.1 2229981 R 391008 CDS YP_002028377.1 194365767 6476097 complement(2230583..2231644) 1 NC_011071.1 PFAM: protein of unknown function DUF182; KEGG: gka:GK0381 hypothetical protein; hypothetical protein 2231644 6476097 Smal_1990 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028377.1 2230583 R 391008 CDS YP_002028378.1 194365768 6476098 complement(2231654..2233858) 1 NC_011071.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO2884 putative xanthine dehydrogenase, molybdenum binding subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 2233858 6476098 Smal_1991 Stenotrophomonas maltophilia R551-3 aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit YP_002028378.1 2231654 R 391008 CDS YP_002028379.1 194365769 6476099 complement(2233858..2234808) 1 NC_011071.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aav:Aave_1486 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding 2234808 6476099 Smal_1992 Stenotrophomonas maltophilia R551-3 molybdopterin dehydrogenase FAD-binding YP_002028379.1 2233858 R 391008 CDS YP_002028380.1 194365770 6476100 complement(2234805..2235452) 1 NC_011071.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1133 putative xanthine dehydrogenase iron-sulfur-binding subunit; putative xanthine dehydrogenase iron-sulfur-binding subunit 2235452 6476100 Smal_1993 Stenotrophomonas maltophilia R551-3 putative xanthine dehydrogenase iron-sulfur-binding subunit YP_002028380.1 2234805 R 391008 CDS YP_002028381.1 194365771 6476101 complement(2235933..2236448) 1 NC_011071.1 PFAM: OsmC family protein; KEGG: bch:Bcen2424_5605 OsmC family protein; OsmC family protein 2236448 6476101 Smal_1994 Stenotrophomonas maltophilia R551-3 OsmC family protein YP_002028381.1 2235933 R 391008 CDS YP_002028382.1 194365772 6476173 complement(2236471..2237238) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: reh:H16_B1984 hypothetical protein; NmrA family protein 2237238 6476173 Smal_1995 Stenotrophomonas maltophilia R551-3 NmrA family protein YP_002028382.1 2236471 R 391008 CDS YP_002028383.1 194365773 6476174 complement(2237377..2238408) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bph:Bphy_6638 transcriptional regulator, LysR family; LysR family transcriptional regulator 2238408 6476174 Smal_1996 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028383.1 2237377 R 391008 CDS YP_002028384.1 194365774 6476175 complement(2238405..2238713) 1 NC_011071.1 PFAM: Sigma-70 region 4 type 2; KEGG: rpa:RPA1116 RNA polymerase sigma factor SigJ; ECF subfamily RNA polymerase sigma-24 subunit 2238713 6476175 Smal_1997 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028384.1 2238405 R 391008 CDS YP_002028385.1 194365775 6476176 2238803..2239282 1 NC_011071.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB3699 hypothetical protein; alkylhydroperoxidase-like protein 2239282 6476176 Smal_1998 Stenotrophomonas maltophilia R551-3 alkylhydroperoxidase-like protein YP_002028385.1 2238803 D 391008 CDS YP_002028386.1 194365776 6476177 2239338..2239742 1 NC_011071.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: reh:H16_B1404 hypothetical protein; cupin 2239742 6476177 Smal_1999 Stenotrophomonas maltophilia R551-3 cupin YP_002028386.1 2239338 D 391008 CDS YP_002028387.1 194365777 6476178 2239818..2240699 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_2922 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit 2240699 6476178 Smal_2000 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028387.1 2239818 D 391008 CDS YP_002028388.1 194365778 6476179 complement(2240814..2241734) 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: rle:RL2294 putative beta-lactamase/hydrolase; beta-lactamase domain-containing protein 2241734 6476179 Smal_2001 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002028388.1 2240814 R 391008 CDS YP_002028389.1 194365779 6476180 complement(2242006..2242482) 1 NC_011071.1 PFAM: protein of unknown function DUF1348; KEGG: xcv:XCV4431 hypothetical protein; hypothetical protein 2242482 6476180 Smal_2002 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028389.1 2242006 R 391008 CDS YP_002028390.1 194365780 6476181 complement(2242545..2243114) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcv:XCV4432 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 2243114 6476181 Smal_2003 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028390.1 2242545 R 391008 CDS YP_002028391.1 194365781 6476182 2243283..2244236 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_0170 non-heme chloroperoxidase; alpha/beta hydrolase fold domain-containing protein 2244236 6476182 Smal_2004 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002028391.1 2243283 D 391008 CDS YP_002028392.1 194365782 6476183 complement(2244352..2244933) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 2244933 6476183 Smal_2005 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028392.1 2244352 R 391008 CDS YP_002028393.1 194365783 6476184 2245106..2246200 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ent:Ent638_2277 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2246200 6476184 Smal_2006 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002028393.1 2245106 D 391008 CDS YP_002028394.1 194365784 6476185 2246264..2247052 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bac:BamMC406_5270 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2247052 6476185 Smal_2007 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028394.1 2246264 D 391008 CDS YP_002028395.1 194365785 6476186 2247096..2248097 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2803 oxidoreductase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein 2248097 6476186 Smal_2008 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase zinc-binding domain-containing protein YP_002028395.1 2247096 D 391008 CDS YP_002028396.1 194365786 6476187 complement(2248194..2250836) 1 NC_011071.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: har:HEAR2032 putative excinuclease ABC subunit A2 UvrA; excinuclease ABC subunit A 2250836 6476187 Smal_2009 Stenotrophomonas maltophilia R551-3 excinuclease ABC subunit A YP_002028396.1 2248194 R 391008 CDS YP_002028397.1 194365787 6476188 complement(2250975..2251862) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cti:RALTA_B0300 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 2251862 6476188 Smal_2010 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028397.1 2250975 R 391008 CDS YP_002028398.1 194365788 6476189 2252030..2253259 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5629 major facilitator superfamily MFS_1; major facilitator superfamily protein 2253259 6476189 Smal_2011 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028398.1 2252030 D 391008 CDS YP_002028399.1 194365789 6476190 2253271..2254257 1 NC_011071.1 PFAM: aldo/keto reductase; KEGG: xfa:XF1724 sugar-phosphate dehydrogenase; aldo/keto reductase 2254257 6476190 Smal_2012 Stenotrophomonas maltophilia R551-3 aldo/keto reductase YP_002028399.1 2253271 D 391008 CDS YP_002028400.1 194365790 6476191 2254283..2254759 1 NC_011071.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: xcb:XC_1438 hypothetical protein; cupin 2254759 6476191 Smal_2013 Stenotrophomonas maltophilia R551-3 cupin YP_002028400.1 2254283 D 391008 CDS YP_002028401.1 194365791 6476192 2254756..2255793 1 NC_011071.1 KEGG: sbl:Sbal_0635 conserved hypothetical signal peptide protein; hypothetical protein 2255793 6476192 Smal_2014 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028401.1 2254756 D 391008 CDS YP_002028402.1 194365792 6476193 complement(2255815..2257698) 1 NC_011071.1 PFAM: PepSY-associated TM helix domain protein; KEGG: xcb:XC_0559 hypothetical protein; PepSY-associated TM helix domain-containing protein 2257698 6476193 Smal_2015 Stenotrophomonas maltophilia R551-3 PepSY-associated TM helix domain-containing protein YP_002028402.1 2255815 R 391008 CDS YP_002028403.1 194365793 6476194 complement(2257745..2260210) 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1927 Ton-B dependent siderophore receptor, putative; TonB-dependent siderophore receptor 2260210 6476194 Smal_2016 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002028403.1 2257745 R 391008 CDS YP_002028404.1 194365794 6476195 complement(2260310..2261347) 1 NC_011071.1 PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 2261347 6476195 Smal_2017 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002028404.1 2260310 R 391008 CDS YP_002028405.1 194365795 6476196 complement(2261344..2262030) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_47400 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2262030 6476196 Smal_2018 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028405.1 2261344 R 391008 CDS YP_002028406.1 194365796 6476197 complement(2262151..2262831) 1 NC_011071.1 KEGG: rpc:RPC_3028 hypothetical protein; hypothetical protein 2262831 6476197 Smal_2019 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028406.1 2262151 R 391008 CDS YP_002028407.1 194365797 6476198 complement(2263097..2263507) 1 NC_011071.1 KEGG: stm:STM2697 phage tail-like protein; hypothetical protein 2263507 6476198 Smal_2020 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028407.1 2263097 R 391008 CDS YP_002028408.1 194365798 6476199 complement(2263683..2264873) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcv:XCV2086 transcriptional regulator, AraC family; AraC family transcriptional regulator 2264873 6476199 Smal_2021 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028408.1 2263683 R 391008 CDS YP_002028409.1 194365799 6476200 2265163..2266239 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xfn:XfasM23_0188 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2266239 6476200 Smal_2022 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028409.1 2265163 D 391008 CDS YP_002028410.1 194365800 6476201 2266236..2269283 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xac:XAC2799 acriflavin resistance protein; acriflavin resistance protein 2269283 6476201 Smal_2023 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002028410.1 2266236 D 391008 CDS YP_002028411.1 194365801 6476202 2269283..2270815 1 NC_011071.1 PFAM: outer membrane efflux protein; KEGG: cak:Caul_1086 RND efflux system, outer membrane lipoprotein, NodT family; outer membrane efflux protein 2270815 6476202 Smal_2024 Stenotrophomonas maltophilia R551-3 outer membrane efflux protein YP_002028411.1 2269283 D 391008 CDS YP_002028412.1 194365802 6476203 2270877..2271467 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: nmu:Nmul_A0041 transcriptional regulator, TetR family; TetR family transcriptional regulator 2271467 6476203 Smal_2025 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028412.1 2270877 D 391008 CDS YP_002028413.1 194365803 6476204 2271524..2272180 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: pfo:PflO1_1281 transcriptional regulator, TetR family; TetR family transcriptional regulator 2272180 6476204 Smal_2026 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028413.1 2271524 D 391008 CDS YP_002028414.1 194365804 6476205 complement(2272190..2273500) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 2273500 6476205 Smal_2027 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit D YP_002028414.1 2272190 R 391008 CDS YP_002028415.1 194365805 6476206 complement(2273739..2274146) 1 NC_011071.1 KEGG: xoo:XOO2199 hypothetical protein; hypothetical protein 2274146 6476206 Smal_2028 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028415.1 2273739 R 391008 CDS YP_002028416.1 194365806 6476207 complement(2274179..2275192) 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_1745 transcriptional regulator LacI family; LacI family transcriptional regulator 2275192 6476207 Smal_2029 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002028416.1 2274179 R 391008 CDS YP_002028417.1 194365807 6476208 2275351..2277861 1 NC_011071.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: xac:XAC2501 multiphosphoryl transfer protein; phosphoenolpyruvate-protein phosphotransferase 2277861 6476208 Smal_2030 Stenotrophomonas maltophilia R551-3 phosphoenolpyruvate-protein phosphotransferase YP_002028417.1 2275351 D 391008 CDS YP_002028418.1 194365808 6476209 2277858..2278814 1 NC_011071.1 KEGG: xac:XAC2502 1-phosphofructokinase (fructose 1-phosphate kinase); TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 2278814 6476209 Smal_2031 Stenotrophomonas maltophilia R551-3 1-phosphofructokinase YP_002028418.1 2277858 D 391008 CDS YP_002028419.1 194365809 6476210 2278901..2280607 1 NC_011071.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: xom:XOO_2652 PTS system fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 2280607 6476210 Smal_2032 Stenotrophomonas maltophilia R551-3 PTS system fructose subfamily transporter subunit IIC YP_002028419.1 2278901 D 391008 CDS YP_002028420.1 194365810 6476211 2280622..2281875 1 NC_011071.1 PFAM: Carbohydrate-selective porin OprB; KEGG: xoo:XOO2813 regulator of pathogenicity factors; carbohydrate-selective porin OprB 2281875 6476211 Smal_2033 Stenotrophomonas maltophilia R551-3 carbohydrate-selective porin OprB YP_002028420.1 2280622 D 391008 CDS YP_002028421.1 194365811 6476212 2282011..2282571 1 NC_011071.1 PFAM: beta-Ig-H3/fasciclin; KEGG: xom:XOO_0610 hypothetical protein; beta-Ig-H3/fasciclin 2282571 6476212 Smal_2034 Stenotrophomonas maltophilia R551-3 beta-Ig-H3/fasciclin YP_002028421.1 2282011 D 391008 CDS YP_002028422.1 194365812 6476213 complement(2282710..2283231) 1 NC_011071.1 KEGG: ent:Ent638_3124 hypothetical protein; hypothetical protein 2283231 6476213 Smal_2035 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028422.1 2282710 R 391008 CDS YP_002028423.1 194365813 6476214 complement(2283328..2284164) 1 NC_011071.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: swd:Swoo_3247 peptidase S1 and S6 chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap 2284164 6476214 Smal_2036 Stenotrophomonas maltophilia R551-3 peptidase S1 and S6 chymotrypsin/Hap YP_002028423.1 2283328 R 391008 CDS YP_002028424.1 194365814 6476215 2284354..2284632 1 NC_011071.1 KEGG: xac:XAC2135 hypothetical protein; hypothetical protein 2284632 6476215 Smal_2037 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028424.1 2284354 D 391008 CDS YP_002028425.1 194365815 6476216 complement(2284664..2285533) 1 NC_011071.1 PFAM: methylenetetrahydrofolate reductase; KEGG: dac:Daci_2669 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 2285533 6476216 Smal_2038 Stenotrophomonas maltophilia R551-3 methylenetetrahydrofolate reductase YP_002028425.1 2284664 R 391008 CDS YP_002028426.1 194365816 6476217 complement(2285533..2286447) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV0342 transcriptional regulator, LysR family; LysR family transcriptional regulator 2286447 6476217 Smal_2039 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028426.1 2285533 R 391008 CDS YP_002028427.1 194365817 6476218 2286624..2287205 1 NC_011071.1 PFAM: NADPH-dependent FMN reductase; KEGG: dac:Daci_2548 FMN reductase; FMN reductase 2287205 6476218 Smal_2040 Stenotrophomonas maltophilia R551-3 FMN reductase YP_002028427.1 2286624 D 391008 CDS YP_002028428.1 194365818 6476219 2287264..2288241 1 NC_011071.1 PFAM: Domain of unknown function DUF1852; KEGG: bur:Bcep18194_C7370 hypothetical protein; hypothetical protein 2288241 6476219 Smal_2041 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028428.1 2287264 D 391008 CDS YP_002028429.1 194365819 6476220 2288280..2289314 1 NC_011071.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2289314 6476220 Smal_2042 Stenotrophomonas maltophilia R551-3 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_002028429.1 2288280 D 391008 CDS YP_002028430.1 194365820 6476221 complement(2289271..2289894) 1 NC_011071.1 KEGG: ptr:747020 hypothetical protein LOC747020; hypothetical protein 2289894 6476221 Smal_2043 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028430.1 2289271 R 391008 CDS YP_002028431.1 194365821 6476222 complement(2289920..2290132) 1 NC_011071.1 hypothetical protein 2290132 6476222 Smal_2044 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028431.1 2289920 R 391008 CDS YP_002028432.1 194365822 6476223 2290379..2291626 1 NC_011071.1 PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: ppg:PputGB1_3669 arsenical pump membrane protein; Arsenical pump membrane protein 2291626 6476223 Smal_2045 Stenotrophomonas maltophilia R551-3 Arsenical pump membrane protein YP_002028432.1 2290379 D 391008 CDS YP_002028433.1 194365823 6476224 complement(2291661..2293313) 1 NC_011071.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bcm:Bcenmc03_4176 ABC transporter related; ABC transporter-like protein 2293313 6476224 Smal_2046 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028433.1 2291661 R 391008 CDS YP_002028434.1 194365824 6476225 2293406..2295817 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2600 TonB-dependent receptor; TonB-dependent receptor 2295817 6476225 Smal_2047 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028434.1 2293406 D 391008 CDS YP_002028435.1 194365825 6476226 2295826..2297289 1 NC_011071.1 KEGG: gvi:glr3105 hypothetical protein; hypothetical protein 2297289 6476226 Smal_2048 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028435.1 2295826 D 391008 CDS YP_002028436.1 194365826 6476227 2297286..2298644 1 NC_011071.1 KEGG: bbt:BBta_3359 putative membrane protein of unknown function; multi- copper enzyme maturation ABC transporter permease-like protein 2298644 6476227 Smal_2049 Stenotrophomonas maltophilia R551-3 multi- copper enzyme maturation ABC transporter permease-like protein YP_002028436.1 2297286 D 391008 CDS YP_002028437.1 194365827 6476228 2298657..2299367 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_3330 ABC transporter related; ABC transporter-like protein 2299367 6476228 Smal_2050 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028437.1 2298657 D 391008 CDS YP_002028438.1 194365828 6476229 complement(2299364..2301205) 1 NC_011071.1 PFAM: asparagine synthase; KEGG: cak:Caul_5191 asparagine synthase; asparagine synthase 2301205 6476229 Smal_2051 Stenotrophomonas maltophilia R551-3 asparagine synthase YP_002028438.1 2299364 R 391008 CDS YP_002028439.1 194365829 6476230 complement(2301217..2301918) 1 NC_011071.1 KEGG: cak:Caul_2240 hypothetical protein; hypothetical protein 2301918 6476230 Smal_2052 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028439.1 2301217 R 391008 CDS YP_002028440.1 194365830 6476231 complement(2301994..2302155) 1 NC_011071.1 hypothetical protein 2302155 6476231 Smal_2053 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028440.1 2301994 R 391008 CDS YP_002028441.1 194365831 6476232 2302361..2303287 1 NC_011071.1 hypothetical protein 2303287 6476232 Smal_2054 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028441.1 2302361 D 391008 CDS YP_002028442.1 194365832 6476233 2303589..2304437 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pap:PSPA7_4421 putative HTH-type transcriptional regulator YeaM; AraC family transcriptional regulator 2304437 6476233 Smal_2055 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028442.1 2303589 D 391008 CDS YP_002028443.1 194365833 6476234 complement(2304487..2305491) 1 NC_011071.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: mxa:MXAN_7314 esterase, PHB depolymerase family; PHB depolymerase family esterase 2305491 6476234 Smal_2056 Stenotrophomonas maltophilia R551-3 PHB depolymerase family esterase YP_002028443.1 2304487 R 391008 CDS YP_002028444.1 194365834 6476235 2305689..2307875 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL2154 outer membrane protein; TonB-dependent receptor 2307875 6476235 Smal_2057 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028444.1 2305689 D 391008 CDS YP_002028445.1 194365835 6476236 2307908..2308786 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_3634 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 2308786 6476236 Smal_2058 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002028445.1 2307908 D 391008 CDS YP_002028446.1 194365836 6476237 2308783..2309268 1 NC_011071.1 PFAM: MaoC domain protein dehydratase; KEGG: mlo:mll1143 nodulation protein N; MaoC domain-containing protein dehydratase 2309268 6476237 Smal_2059 Stenotrophomonas maltophilia R551-3 MaoC domain-containing protein dehydratase YP_002028446.1 2308783 D 391008 CDS YP_002028447.1 194365837 6476238 2309305..2312640 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pae:PA3271 probable two-component sensor; multi-sensor hybrid histidine kinase 2312640 6476238 Smal_2060 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002028447.1 2309305 D 391008 CDS YP_002028448.1 194365838 6476239 complement(2312645..2313319) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: maq:Maqu_2218 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2313319 6476239 Smal_2061 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002028448.1 2312645 R 391008 CDS YP_002028449.1 194365839 6476240 2313449..2315089 1 NC_011071.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1335 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; AMP-dependent synthetase and ligase 2315089 6476240 Smal_2062 Stenotrophomonas maltophilia R551-3 AMP-dependent synthetase and ligase YP_002028449.1 2313449 D 391008 CDS YP_002028450.1 194365840 6476241 complement(2315217..2315708) 1 NC_011071.1 KEGG: xac:XAC2495 hypothetical protein; hypothetical protein 2315708 6476241 Smal_2063 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028450.1 2315217 R 391008 CDS YP_002028451.1 194365841 6476242 complement(2315887..2316630) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mmr:Mmar10_0254 transcriptional regulator, GntR family; GntR family transcriptional regulator 2316630 6476242 Smal_2064 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002028451.1 2315887 R 391008 CDS YP_002028452.1 194365842 6476243 complement(2316733..2319624) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2991 hypothetical protein; TonB-dependent receptor 2319624 6476243 Smal_2065 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028452.1 2316733 R 391008 CDS YP_002028453.1 194365843 6476244 2319866..2321305 1 NC_011071.1 KEGG: pha:PSHAa1749 alginate lyase precursor; alginate lyase 2321305 6476244 Smal_2066 Stenotrophomonas maltophilia R551-3 alginate lyase YP_002028453.1 2319866 D 391008 CDS YP_002028454.1 194365844 6476245 2321302..2323536 1 NC_011071.1 PFAM: Heparinase II/III family protein; KEGG: sde:Sde_3284 hypothetical protein; heparinase II/III family protein 2323536 6476245 Smal_2067 Stenotrophomonas maltophilia R551-3 heparinase II/III family protein YP_002028454.1 2321302 D 391008 CDS YP_002028455.1 194365845 6476246 2323533..2324837 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: spu:767491 similar to CG3036-PA; major facilitator superfamily protein 2324837 6476246 Smal_2068 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028455.1 2323533 D 391008 CDS YP_002028456.1 194365846 6476247 2324898..2325650 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0259 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2325650 6476247 Smal_2069 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028456.1 2324898 D 391008 CDS YP_002028457.1 194365847 6476248 2325672..2326859 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xcb:XC_0121 hypothetical protein; G-D-S-L family lipolytic protein 2326859 6476248 Smal_2070 Stenotrophomonas maltophilia R551-3 G-D-S-L family lipolytic protein YP_002028457.1 2325672 D 391008 CDS YP_002028458.1 194365848 6476249 2326870..2327889 1 NC_011071.1 PFAM: PfkB domain protein; KEGG: xcv:XCV0122 2-keto-3-deoxygluconate kinase; PfkB domain-containing protein 2327889 6476249 Smal_2071 Stenotrophomonas maltophilia R551-3 PfkB domain-containing protein YP_002028458.1 2326870 D 391008 CDS YP_002028459.1 194365849 6476250 complement(2327907..2328800) 1 NC_011071.1 KEGG: sdn:Sden_1685 hypothetical protein; hypothetical protein 2328800 6476250 Smal_2072 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028459.1 2327907 R 391008 CDS YP_002028460.1 194365850 6476251 complement(2328922..2330373) 1 NC_011071.1 KEGG: dac:Daci_3058 hypothetical protein; hypothetical protein 2330373 6476251 Smal_2073 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028460.1 2328922 R 391008 CDS YP_002028461.1 194365851 6476252 complement(2330461..2332035) 1 NC_011071.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: xcb:XC_3534 hypothetical protein; peptidase S15 2332035 6476252 Smal_2074 Stenotrophomonas maltophilia R551-3 peptidase S15 YP_002028461.1 2330461 R 391008 CDS YP_002028462.1 194365852 6476253 complement(2332283..2333767) 1 NC_011071.1 KEGG: sgr:SGR_759 putative secreted serine protease; hypothetical protein 2333767 6476253 Smal_2075 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028462.1 2332283 R 391008 CDS YP_002028463.1 194365853 6476254 2334582..2335322 1 NC_011071.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: xcb:XC_2580 endonuclease precursor; DNA/RNA non-specific endonuclease 2335322 6476254 Smal_2076 Stenotrophomonas maltophilia R551-3 DNA/RNA non-specific endonuclease YP_002028463.1 2334582 D 391008 CDS YP_002028464.1 194365854 6476337 2335433..2336128 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD-superfamily hydrolase 2336128 6476337 Smal_2077 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002028464.1 2335433 D 391008 CDS YP_002028465.1 194365855 6476338 complement(2336136..2336366) 1 NC_011071.1 KEGG: pla:Plav_0473 hypothetical protein; hypothetical protein 2336366 6476338 Smal_2078 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028465.1 2336136 R 391008 CDS YP_002028466.1 194365856 6476339 complement(2336363..2336788) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 2336788 6476339 Smal_2079 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002028466.1 2336363 R 391008 CDS YP_002028467.1 194365857 6476340 2337026..2339503 1 NC_011071.1 PFAM: aminotransferase class V; MCP methyltransferase CheR-type; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1950 hypothetical protein; CheR-type MCP methyltransferase 2339503 6476340 Smal_2080 Stenotrophomonas maltophilia R551-3 CheR-type MCP methyltransferase YP_002028467.1 2337026 D 391008 CDS YP_002028468.1 194365858 6476341 complement(2339547..2340008) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1506 transcriptional regulator, AraC family; AraC family transcriptional regulator 2340008 6476341 Smal_2081 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028468.1 2339547 R 391008 CDS YP_002028469.1 194365859 6476342 complement(2340005..2340931) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_3951 transcriptional regulator, LysR family; LysR family transcriptional regulator 2340931 6476342 Smal_2082 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028469.1 2340005 R 391008 CDS YP_002028470.1 194365860 6476343 2341022..2342062 1 NC_011071.1 KEGG: aba:Acid345_2173 hypothetical protein; hypothetical protein 2342062 6476343 Smal_2083 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028470.1 2341022 D 391008 CDS YP_002028471.1 194365861 6476344 2342059..2342940 1 NC_011071.1 PFAM: WD40 domain protein beta Propeller; KEGG: xcb:XC_4042 hypothetical protein; WD40 domain-containing protein 2342940 6476344 Smal_2084 Stenotrophomonas maltophilia R551-3 WD40 domain-containing protein YP_002028471.1 2342059 D 391008 CDS YP_002028472.1 194365862 6476345 2343009..2343545 1 NC_011071.1 KEGG: mxa:MXAN_2139 hypothetical protein; hypothetical protein 2343545 6476345 Smal_2085 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028472.1 2343009 D 391008 CDS YP_002028473.1 194365863 6476346 2343538..2343846 1 NC_011071.1 KEGG: jan:Jann_2414 hypothetical protein; hypothetical protein 2343846 6476346 Smal_2086 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028473.1 2343538 D 391008 CDS YP_002028474.1 194365864 6476347 complement(2343847..2345202) 1 NC_011071.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ppw:PputW619_2769 sigma54 specific transcriptional regulator, fis family; Fis family sigma-54 specific transcriptional regulator 2345202 6476347 Smal_2087 Stenotrophomonas maltophilia R551-3 Fis family sigma-54 specific transcriptional regulator YP_002028474.1 2343847 R 391008 CDS YP_002028475.1 194365865 6476348 2345599..2346132 1 NC_011071.1 KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 2346132 6476348 Smal_2088 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028475.1 2345599 D 391008 CDS YP_002028476.1 194365866 6476349 2346129..2346746 1 NC_011071.1 KEGG: pfl:PFL_3119 hypothetical protein; hypothetical protein 2346746 6476349 Smal_2089 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028476.1 2346129 D 391008 CDS YP_002028477.1 194365867 6476350 2346790..2348106 1 NC_011071.1 KEGG: swd:Swoo_4128 hypothetical protein; hypothetical protein 2348106 6476350 Smal_2090 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028477.1 2346790 D 391008 CDS YP_002028478.1 194365868 6476351 2348206..2348910 1 NC_011071.1 PFAM: peptidase C39 bacteriocin processing; KEGG: ppw:PputW619_2765 peptidase C39 bacteriocin processing; peptidase C39 bacteriocin processing 2348910 6476351 Smal_2091 Stenotrophomonas maltophilia R551-3 peptidase C39 bacteriocin processing YP_002028478.1 2348206 D 391008 CDS YP_002028479.1 194365869 6476352 2348924..2349673 1 NC_011071.1 KEGG: pae:PA1952 hypothetical protein; hypothetical protein 2349673 6476352 Smal_2092 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028479.1 2348924 D 391008 CDS YP_002028480.1 194365870 6476353 2349720..2351012 1 NC_011071.1 KEGG: cvi:CV_0689 hypothetical protein; hypothetical protein 2351012 6476353 Smal_2093 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028480.1 2349720 D 391008 CDS YP_002028481.1 194365871 6476354 2351201..2352724 1 NC_011071.1 hypothetical protein 2352724 6476354 Smal_2094 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028481.1 2351201 D 391008 CDS YP_002028482.1 194365872 6476355 2352816..2353886 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: ptr:465814 angiomotin; NUDIX hydrolase 2353886 6476355 Smal_2095 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002028482.1 2352816 D 391008 CDS YP_002028483.1 194365873 6476356 2354108..2354398 1 NC_011071.1 KEGG: xac:XAC3014 RebB protein; RebB protein 2354398 6476356 Smal_2096 Stenotrophomonas maltophilia R551-3 RebB protein YP_002028483.1 2354108 D 391008 CDS YP_002028484.1 194365874 6476357 2354442..2354711 1 NC_011071.1 KEGG: xac:XAC3014 RebB protein; RebB protein 2354711 6476357 Smal_2097 Stenotrophomonas maltophilia R551-3 RebB protein YP_002028484.1 2354442 D 391008 CDS YP_002028485.1 194365875 6476358 2354738..2355004 1 NC_011071.1 KEGG: xac:XAC3016 RebA protein; RebA protein 2355004 6476358 Smal_2098 Stenotrophomonas maltophilia R551-3 RebA protein YP_002028485.1 2354738 D 391008 CDS YP_002028486.1 194365876 6476359 2355065..2355337 1 NC_011071.1 KEGG: xac:XAC3017 RebB protein; RebB protein 2355337 6476359 Smal_2099 Stenotrophomonas maltophilia R551-3 RebB protein YP_002028486.1 2355065 D 391008 CDS YP_002028487.1 194365877 6476360 2355408..2355644 1 NC_011071.1 KEGG: xac:XAC3019 hypothetical protein; hypothetical protein 2355644 6476360 Smal_2100 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028487.1 2355408 D 391008 CDS YP_002028488.1 194365878 6476361 2355641..2356225 1 NC_011071.1 KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein 2356225 6476361 Smal_2101 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028488.1 2355641 D 391008 CDS YP_002028489.1 194365879 6476362 2356273..2356620 1 NC_011071.1 KEGG: xac:XAC3020 hypothetical protein; hypothetical protein 2356620 6476362 Smal_2102 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028489.1 2356273 D 391008 CDS YP_002028490.1 194365880 6476363 2356639..2357724 1 NC_011071.1 KEGG: xac:XAC3021 hypothetical protein; hypothetical protein 2357724 6476363 Smal_2103 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028490.1 2356639 D 391008 CDS YP_002028491.1 194365881 6476364 2357937..2358173 1 NC_011071.1 KEGG: met:M446_4535 hypothetical protein; hypothetical protein 2358173 6476364 Smal_2104 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028491.1 2357937 D 391008 CDS YP_002028492.1 194365882 6476365 complement(2358230..2359723) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; sigma-54 factor interaction domain-containing protein; KEGG: xac:XAC3026 transcriptional regulator; putative sigma-54 specific transcriptional regulator 2359723 6476365 Smal_2105 Stenotrophomonas maltophilia R551-3 putative sigma-54 specific transcriptional regulator YP_002028492.1 2358230 R 391008 CDS YP_002028493.1 194365883 6476366 2360244..2361383 1 NC_011071.1 KEGG: xcb:XC_2139 hypothetical protein; hypothetical protein 2361383 6476366 Smal_2106 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028493.1 2360244 D 391008 CDS YP_002028494.1 194365884 6476367 2361404..2362756 1 NC_011071.1 KEGG: xcb:XC_2140 hypothetical protein; hypothetical protein 2362756 6476367 Smal_2107 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028494.1 2361404 D 391008 CDS YP_002028495.1 194365885 6476368 2362753..2363010 1 NC_011071.1 KEGG: xcb:XC_2141 hypothetical protein; hypothetical protein 2363010 6476368 Smal_2108 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028495.1 2362753 D 391008 CDS YP_002028496.1 194365886 6476369 complement(2363113..2364009) 1 NC_011071.1 KEGG: oih:OB2740 hypothetical protein; protein tyrosine/serine phosphatase 2364009 6476369 Smal_2109 Stenotrophomonas maltophilia R551-3 protein tyrosine/serine phosphatase YP_002028496.1 2363113 R 391008 CDS YP_002028497.1 194365887 6476370 complement(2364027..2366324) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_2950 TonB-dependent receptor, plug; TonB-dependent receptor 2366324 6476370 Smal_2110 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028497.1 2364027 R 391008 CDS YP_002028498.1 194365888 6476371 2366439..2367083 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: azo:azo0243 putative TetR family transcriptional regulator; TetR family transcriptional regulator 2367083 6476371 Smal_2111 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028498.1 2366439 D 391008 CDS YP_002028499.1 194365889 6476372 2367154..2367738 1 NC_011071.1 KEGG: mes:Meso_3393 outer membrane lipoprotein omp19; hypothetical protein 2367738 6476372 Smal_2112 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028499.1 2367154 D 391008 CDS YP_002028500.1 194365890 6476373 2367865..2369115 1 NC_011071.1 KEGG: dge:Dgeo_1247 cytochrome c assembly protein; hypothetical protein 2369115 6476373 Smal_2113 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028500.1 2367865 D 391008 CDS YP_002028501.1 194365891 6476374 2369287..2370996 1 NC_011071.1 KEGG: xcc:XCC4224 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2370996 6476374 Smal_2114 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor-containing diguanylate cyclase YP_002028501.1 2369287 D 391008 CDS YP_002028502.1 194365892 6476375 complement(2371074..2373017) 1 NC_011071.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: dac:Daci_2316 ABC transporter related; ABC transporter-like protein 2373017 6476375 Smal_2115 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028502.1 2371074 R 391008 CDS YP_002028503.1 194365893 6476376 complement(2373020..2374201) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_2317 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2374201 6476376 Smal_2116 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028503.1 2373020 R 391008 CDS YP_002028504.1 194365894 6476377 2374396..2375007 1 NC_011071.1 KEGG: met:M446_5855 AsmA family protein; hypothetical protein 2375007 6476377 Smal_2117 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028504.1 2374396 D 391008 CDS YP_002028505.1 194365895 6476378 2375067..2375783 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcm:Bcenmc03_4368 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2375783 6476378 Smal_2118 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002028505.1 2375067 D 391008 CDS YP_002028506.1 194365896 6476379 2375787..2376863 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bur:Bcep18194_C6826 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2376863 6476379 Smal_2119 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002028506.1 2375787 D 391008 CDS YP_002028507.1 194365897 6476380 2377064..2377990 1 NC_011071.1 KEGG: pfl:PFL_6025 hypothetical protein; hypothetical protein 2377990 6476380 Smal_2120 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028507.1 2377064 D 391008 CDS YP_002028508.1 194365898 6476381 complement(2378251..2378865) 1 NC_011071.1 KEGG: ppu:PP_2597 hypothetical protein; hypothetical protein 2378865 6476381 Smal_2121 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028508.1 2378251 R 391008 CDS YP_002028509.1 194365899 6476382 2379036..2379872 1 NC_011071.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: cgb:cg0054 iron-chelator utilization protein; Siderophore-interacting protein 2379872 6476382 Smal_2122 Stenotrophomonas maltophilia R551-3 Siderophore-interacting protein YP_002028509.1 2379036 D 391008 CDS YP_002028510.1 194365900 6476383 2380068..2382245 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2492 TonB-dependent siderophore receptor BauA; TonB-dependent siderophore receptor 2382245 6476383 Smal_2123 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002028510.1 2380068 D 391008 CDS YP_002028511.1 194365901 6476384 2382298..2382597 1 NC_011071.1 KEGG: dac:Daci_0273 hypothetical protein; hypothetical protein 2382597 6476384 Smal_2124 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028511.1 2382298 D 391008 CDS YP_002028512.1 194365902 6476385 2382594..2384204 1 NC_011071.1 PFAM: PepSY-associated TM helix domain protein; KEGG: dac:Daci_0272 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 2384204 6476385 Smal_2125 Stenotrophomonas maltophilia R551-3 PepSY-associated TM helix domain-containing protein YP_002028512.1 2382594 D 391008 CDS YP_002028513.1 194365903 6476386 2384201..2384479 1 NC_011071.1 KEGG: dac:Daci_0271 hypothetical protein; hypothetical protein 2384479 6476386 Smal_2126 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028513.1 2384201 D 391008 CDS YP_002028514.1 194365904 6476387 complement(2384651..2385763) 1 NC_011071.1 KEGG: dac:Daci_2290 hypothetical protein; hypothetical protein 2385763 6476387 Smal_2127 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028514.1 2384651 R 391008 CDS YP_002028515.1 194365905 6476388 complement(2385817..2386431) 1 NC_011071.1 KEGG: ppu:PP_2597 hypothetical protein; putative TetR family transcriptional regulator 2386431 6476388 Smal_2128 Stenotrophomonas maltophilia R551-3 putative TetR family transcriptional regulator YP_002028515.1 2385817 R 391008 CDS YP_002028516.1 194365906 6476389 2386749..2388917 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2492 TonB-dependent siderophore receptor BauA; TonB-dependent siderophore receptor 2388917 6476389 Smal_2129 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002028516.1 2386749 D 391008 CDS YP_002028517.1 194365907 6476390 complement(2388985..2391669) 1 NC_011071.1 PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sen:SACE_4025 membrane translocator; serine/threonine protein kinase 2391669 6476390 Smal_2130 Stenotrophomonas maltophilia R551-3 serine/threonine protein kinase YP_002028517.1 2388985 R 391008 CDS YP_002028518.1 194365908 6476391 complement(2391838..2391963) 1 NC_011071.1 hypothetical protein 2391963 6476391 Smal_2131 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028518.1 2391838 R 391008 CDS YP_002028519.1 194365909 6476392 complement(2392131..2392775) 1 NC_011071.1 PFAM: TraX family protein; KEGG: xom:XOO_2140 TrbP protein; conjugal transfer protein TrbP 2392775 6476392 Smal_2132 Stenotrophomonas maltophilia R551-3 conjugal transfer protein TrbP YP_002028519.1 2392131 R 391008 CDS YP_002028520.1 194365910 6476393 2392911..2393858 1 NC_011071.1 KEGG: xac:XAC0909 proline imino-peptidase, chain A; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 2393858 6476393 Smal_2133 Stenotrophomonas maltophilia R551-3 proline iminopeptidase YP_002028520.1 2392911 D 391008 CDS YP_002028521.1 194365911 6476394 2394164..2394463 1 NC_011071.1 hypothetical protein 2394463 6476394 Smal_2134 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028521.1 2394164 D 391008 CDS YP_002028522.1 194365912 6476395 2394757..2395056 1 NC_011071.1 KEGG: aav:Aave_0650 hypothetical protein; hypothetical protein 2395056 6476395 Smal_2135 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028522.1 2394757 D 391008 CDS YP_002028523.1 194365913 6476396 2395119..2397878 1 NC_011071.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 2397878 6476396 Smal_2136 Stenotrophomonas maltophilia R551-3 magnesium-transporting ATPase MgtA YP_002028523.1 2395119 D 391008 CDS YP_002028524.1 194365914 6476397 2397910..2398647 1 NC_011071.1 PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; MgtC/SapB transporter 2398647 6476397 Smal_2137 Stenotrophomonas maltophilia R551-3 MgtC/SapB transporter YP_002028524.1 2397910 D 391008 CDS YP_002028525.1 194365915 6476398 2398777..2399832 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbr:BB1101 two component sensor kinase; integral membrane sensor signal transduction histidine kinase 2399832 6476398 Smal_2138 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002028525.1 2398777 D 391008 CDS YP_002028526.1 194365916 6476399 2399825..2400466 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_0194 nodulation protein W, DNA-binding response regulator; two component LuxR family transcriptional regulator 2400466 6476399 Smal_2139 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002028526.1 2399825 D 391008 CDS YP_002028527.1 194365917 6476400 2400463..2401008 1 NC_011071.1 PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein; hypothetical protein 2401008 6476400 Smal_2140 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028527.1 2400463 D 391008 CDS YP_002028528.1 194365918 6476401 complement(2401120..2402292) 1 NC_011071.1 PFAM: low temperature requirement A; KEGG: bid:Bind_1086 low temperature requirement A; low temperature requirement A 2402292 6476401 Smal_2141 Stenotrophomonas maltophilia R551-3 low temperature requirement A YP_002028528.1 2401120 R 391008 CDS YP_002028529.1 194365919 6476402 complement(2402302..2402568) 1 NC_011071.1 KEGG: pap:PSPA7_2235 hypothetical protein; hypothetical protein 2402568 6476402 Smal_2142 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028529.1 2402302 R 391008 CDS YP_002028530.1 194365920 6476403 2402772..2403296 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA1363 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2403296 6476403 Smal_2143 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028530.1 2402772 D 391008 CDS YP_002028531.1 194365921 6476404 2403293..2404144 1 NC_011071.1 PFAM: FecR protein; KEGG: pae:PA1364 probable transmembrane sensor; anti-FecI sigma factor FecR 2404144 6476404 Smal_2144 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002028531.1 2403293 D 391008 CDS YP_002028532.1 194365922 6476405 2404216..2406645 1 NC_011071.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: hch:HCH_03460 outer membrane receptor protein, mostly Fe transport; TonB-dependent receptor 2406645 6476405 Smal_2145 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028532.1 2404216 D 391008 CDS YP_002028533.1 194365923 6476406 2406741..2407613 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: ote:Oter_1111 beta-lactamase; beta-lactamase 2407613 6476406 Smal_2146 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002028533.1 2406741 D 391008 CDS YP_002028534.1 194365924 6476407 complement(2407787..2408326) 1 NC_011071.1 PFAM: protein of unknown function DUF411; KEGG: har:HEAR2924 Conserved hypothetical protein; putative exported protein. putative conserved domains; hypothetical protein 2408326 6476407 Smal_2147 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028534.1 2407787 R 391008 CDS YP_002028535.1 194365925 6476408 complement(2408804..2411089) 1 NC_011071.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sal:Sala_0186 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit 2411089 6476408 Smal_2148 Stenotrophomonas maltophilia R551-3 oxidoreductase alpha (molybdopterin) subunit YP_002028535.1 2408804 R 391008 CDS YP_002028536.1 194365926 6476480 2411333..2412181 1 NC_011071.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: reh:H16_A0643 uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase family accessory protein FdhD 2412181 6476480 Smal_2149 Stenotrophomonas maltophilia R551-3 formate dehydrogenase family accessory protein FdhD YP_002028536.1 2411333 D 391008 CDS YP_002028537.1 194365927 6476481 complement(2412220..2412756) 1 NC_011071.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB2474 hypothetical protein; hypothetical protein 2412756 6476481 Smal_2150 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028537.1 2412220 R 391008 CDS YP_002028538.1 194365928 6476482 2412863..2413744 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB2473 putative AraC-family transcriptional regulator; AraC family transcriptional regulator 2413744 6476482 Smal_2151 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028538.1 2412863 D 391008 CDS YP_002028539.1 194365929 6476483 complement(2413862..2414419) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: sgr:SGR_6919 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 2414419 6476483 Smal_2152 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028539.1 2413862 R 391008 CDS YP_002028540.1 194365930 6476484 complement(2414424..2415956) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_6920 putative permease of the major facilitator superfamily; major facilitator superfamily protein 2415956 6476484 Smal_2153 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028540.1 2414424 R 391008 CDS YP_002028541.1 194365931 6476485 complement(2416138..2416887) 1 NC_011071.1 hypothetical protein 2416887 6476485 Smal_2154 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028541.1 2416138 R 391008 CDS YP_002028542.1 194365932 6476486 complement(2416887..2417507) 1 NC_011071.1 KEGG: ppu:PP_0505 lipoprotein, putative; hypothetical protein 2417507 6476486 Smal_2155 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028542.1 2416887 R 391008 CDS YP_002028543.1 194365933 6476487 complement(2417497..2418048) 1 NC_011071.1 KEGG: maq:Maqu_3430 hypothetical protein; hypothetical protein 2418048 6476487 Smal_2156 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028543.1 2417497 R 391008 CDS YP_002028544.1 194365934 6476488 complement(2418051..2419304) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein 2419304 6476488 Smal_2157 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028544.1 2418051 R 391008 CDS YP_002028545.1 194365935 6476489 complement(2419297..2419977) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein 2419977 6476489 Smal_2158 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028545.1 2419297 R 391008 CDS YP_002028546.1 194365936 6476490 complement(2419989..2420522) 1 NC_011071.1 KEGG: hch:HCH_00656 ABC-type metal ion transport system, periplasmic component/surface adhesin; hypothetical protein 2420522 6476490 Smal_2159 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028546.1 2419989 R 391008 CDS YP_002028547.1 194365937 6476491 2420555..2421031 1 NC_011071.1 KEGG: xfm:Xfasm12_1848 hypothetical protein; hypothetical protein 2421031 6476491 Smal_2160 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028547.1 2420555 D 391008 CDS YP_002028548.1 194365938 6476492 complement(2421146..2423335) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5246 TonB-dependent receptor; TonB-dependent receptor 2423335 6476492 Smal_2161 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028548.1 2421146 R 391008 CDS YP_002028549.1 194365939 6476493 2423467..2424321 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cak:Caul_5108 transcriptional regulator, AraC family; AraC family transcriptional regulator 2424321 6476493 Smal_2162 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028549.1 2423467 D 391008 CDS YP_002028550.1 194365940 6476494 2424433..2424810 1 NC_011071.1 PFAM: copper resistance protein CopC; KEGG: reh:H16_B2183 copper resistance protein C; copper resistance protein CopC 2424810 6476494 Smal_2163 Stenotrophomonas maltophilia R551-3 copper resistance protein CopC YP_002028550.1 2424433 D 391008 CDS YP_002028551.1 194365941 6476495 2424821..2425705 1 NC_011071.1 PFAM: copper resistance D domain protein; KEGG: reu:Reut_A2486 copper resistance D; copper resistance D domain-containing protein 2425705 6476495 Smal_2164 Stenotrophomonas maltophilia R551-3 copper resistance D domain-containing protein YP_002028551.1 2424821 D 391008 CDS YP_002028552.1 194365942 6476496 2425751..2426449 1 NC_011071.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein; two component heavy metal response transcriptional regulator, winged helix family 2426449 6476496 Smal_2165 Stenotrophomonas maltophilia R551-3 two component heavy metal response transcriptional regulator, winged helix family YP_002028552.1 2425751 D 391008 CDS YP_002028553.1 194365943 6476497 2426446..2427813 1 NC_011071.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: reu:Reut_A2491 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 2427813 6476497 Smal_2166 Stenotrophomonas maltophilia R551-3 heavy metal sensor signal transduction histidine kinase YP_002028553.1 2426446 D 391008 CDS YP_002028554.1 194365944 6476498 complement(2427879..2428772) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI2671 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 2428772 6476498 Smal_2167 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028554.1 2427879 R 391008 CDS YP_002028555.1 194365945 6476499 2428879..2429622 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC0083 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2429622 6476499 Smal_2168 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028555.1 2428879 D 391008 CDS YP_002028556.1 194365946 6476500 complement(2429767..2432844) 1 NC_011071.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cti:RALTA_B0380 putative cation efflux system transmembrane protein; CzcA family heavy metal efflux pump 2432844 6476500 Smal_2169 Stenotrophomonas maltophilia R551-3 CzcA family heavy metal efflux pump YP_002028556.1 2429767 R 391008 CDS YP_002028557.1 194365947 6476501 complement(2432841..2434013) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rme:Rmet_3837 secretion protein HlyD; RND family efflux transporter MFP subunit 2434013 6476501 Smal_2170 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028557.1 2432841 R 391008 CDS YP_002028558.1 194365948 6476502 complement(2434010..2435257) 1 NC_011071.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_1877 outer membrane efflux protein; outer membrane efflux protein 2435257 6476502 Smal_2171 Stenotrophomonas maltophilia R551-3 outer membrane efflux protein YP_002028558.1 2434010 R 391008 CDS YP_002028559.1 194365949 6476503 2435320..2435994 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo0975 probable two-component response regulatory protein; winged helix family two component transcriptional regulator 2435994 6476503 Smal_2172 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002028559.1 2435320 D 391008 CDS YP_002028560.1 194365950 6476504 2435987..2437360 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: mca:MCA1765 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2437360 6476504 Smal_2173 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002028560.1 2435987 D 391008 CDS YP_002028561.1 194365951 6476505 complement(2437492..2439846) 1 NC_011071.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xac:XAC1179 hypothetical protein; alpha-1,2-mannosidase 2439846 6476505 Smal_2174 Stenotrophomonas maltophilia R551-3 alpha-1,2-mannosidase YP_002028561.1 2437492 R 391008 CDS YP_002028562.1 194365952 6476506 complement(2439943..2440266) 1 NC_011071.1 PFAM: Thioredoxin domain; KEGG: xcb:XC_0083 thioredoxin; Thioredoxin domain 2440266 6476506 Smal_2175 Stenotrophomonas maltophilia R551-3 Thioredoxin domain YP_002028562.1 2439943 R 391008 CDS YP_002028563.1 194365953 6476507 complement(2440272..2440688) 1 NC_011071.1 KEGG: xcv:XCV0079 hypothetical protein; hypothetical protein 2440688 6476507 Smal_2176 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028563.1 2440272 R 391008 CDS YP_002028564.1 194365954 6476508 complement(2440924..2441082) 1 NC_011071.1 hypothetical protein 2441082 6476508 Smal_2177 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028564.1 2440924 R 391008 CDS YP_002028565.1 194365955 6476509 2441552..2443039 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xcb:XC_0084 proline/betaine transporter; general substrate transporter 2443039 6476509 Smal_2178 Stenotrophomonas maltophilia R551-3 general substrate transporter YP_002028565.1 2441552 D 391008 CDS YP_002028566.1 194365956 6476510 complement(2443059..2443700) 1 NC_011071.1 hypothetical protein 2443700 6476510 Smal_2179 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028566.1 2443059 R 391008 CDS YP_002028567.1 194365957 6476511 complement(2443810..2444436) 1 NC_011071.1 KEGG: xcv:XCV1821 hypothetical protein; hypothetical protein 2444436 6476511 Smal_2180 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028567.1 2443810 R 391008 CDS YP_002028568.1 194365958 6476512 complement(2444440..2444781) 1 NC_011071.1 KEGG: xom:XOO_2241 hypothetical protein; hypothetical protein 2444781 6476512 Smal_2181 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028568.1 2444440 R 391008 CDS YP_002028569.1 194365959 6476513 complement(2444852..2446438) 1 NC_011071.1 KEGG: mrd:Mrad2831_4235 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 2446438 6476513 Smal_2182 Stenotrophomonas maltophilia R551-3 signal transduction histidine kinase YP_002028569.1 2444852 R 391008 CDS YP_002028570.1 194365960 6476514 complement(2446448..2446852) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xau:Xaut_2532 response regulator receiver protein; response regulator receiver protein 2446852 6476514 Smal_2183 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002028570.1 2446448 R 391008 CDS YP_002028571.1 194365961 6476515 complement(2446965..2448419) 1 NC_011071.1 KEGG: ppg:PputGB1_1525 conserved hypothetical protein; putative peptide signal; hypothetical protein 2448419 6476515 Smal_2184 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028571.1 2446965 R 391008 CDS YP_002028572.1 194365962 6476516 complement(2448511..2449275) 1 NC_011071.1 KEGG: mmw:Mmwyl1_4302 hypothetical protein; hypothetical protein 2449275 6476516 Smal_2185 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028572.1 2448511 R 391008 CDS YP_002028573.1 194365963 6476517 complement(2449330..2452452) 1 NC_011071.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_4301 TonB-dependent receptor; TonB-dependent receptor 2452452 6476517 Smal_2186 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028573.1 2449330 R 391008 CDS YP_002028574.1 194365964 6476518 complement(2452635..2453591) 1 NC_011071.1 PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein; anti-FecI sigma factor FecR 2453591 6476518 Smal_2187 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002028574.1 2452635 R 391008 CDS YP_002028575.1 194365965 6476519 complement(2453674..2454177) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2454177 6476519 Smal_2188 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028575.1 2453674 R 391008 CDS YP_002028576.1 194365966 6476520 complement(2454318..2455244) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_3305 transcriptional regulator, LysR family; LysR family transcriptional regulator 2455244 6476520 Smal_2189 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028576.1 2454318 R 391008 CDS YP_002028577.1 194365967 6476521 2455396..2456262 1 NC_011071.1 PFAM: Pirin domain protein; KEGG: bch:Bcen2424_1152 pirin domain protein domain protein; Pirin domain-containing protein 2456262 6476521 Smal_2190 Stenotrophomonas maltophilia R551-3 Pirin domain-containing protein YP_002028577.1 2455396 D 391008 CDS YP_002028578.1 194365968 6476522 2456334..2457014 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: oan:Oant_3983 isochorismatase hydrolase; isochorismatase hydrolase 2457014 6476522 Smal_2191 Stenotrophomonas maltophilia R551-3 isochorismatase hydrolase YP_002028578.1 2456334 D 391008 CDS YP_002028579.1 194365969 6476523 2457069..2457710 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: rso:RS01788 hypothetical protein; isochorismatase hydrolase 2457710 6476523 Smal_2192 Stenotrophomonas maltophilia R551-3 isochorismatase hydrolase YP_002028579.1 2457069 D 391008 CDS YP_002028580.1 194365970 6476524 2457796..2458185 1 NC_011071.1 PFAM: OsmC family protein; KEGG: bam:Bamb_5525 OsmC family protein; OsmC family protein 2458185 6476524 Smal_2193 Stenotrophomonas maltophilia R551-3 OsmC family protein YP_002028580.1 2457796 D 391008 CDS YP_002028581.1 194365971 6476525 2458312..2459706 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2138 ABC transporter with duplicated ATPase domain; ABC transporter-like protein 2459706 6476525 Smal_2194 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028581.1 2458312 D 391008 CDS YP_002028582.1 194365972 6476526 complement(2459838..2460167) 1 NC_011071.1 hypothetical protein 2460167 6476526 Smal_2195 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028582.1 2459838 R 391008 CDS YP_002028583.1 194365973 6476527 complement(2460265..2462010) 1 NC_011071.1 KEGG: mms:mma_2376 hypothetical protein; hypothetical protein 2462010 6476527 Smal_2196 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028583.1 2460265 R 391008 CDS YP_002028584.1 194365974 6476528 complement(2462053..2462754) 1 NC_011071.1 KEGG: mms:mma_2377 hypothetical protein; hypothetical protein 2462754 6476528 Smal_2197 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028584.1 2462053 R 391008 CDS YP_002028585.1 194365975 6476529 complement(2462758..2463171) 1 NC_011071.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_2378 ExbD transport protein; biopolymer transport protein ExbD/TolR 2463171 6476529 Smal_2198 Stenotrophomonas maltophilia R551-3 biopolymer transport protein ExbD/TolR YP_002028585.1 2462758 R 391008 CDS YP_002028586.1 194365976 6476530 complement(2463182..2464966) 1 NC_011071.1 PFAM: MotA/TolQ/ExbB proton channel; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mms:mma_2379 ExbB transport protein; MotA/TolQ/ExbB proton channel 2464966 6476530 Smal_2199 Stenotrophomonas maltophilia R551-3 MotA/TolQ/ExbB proton channel YP_002028586.1 2463182 R 391008 CDS YP_002028587.1 194365977 6476531 complement(2465005..2466630) 1 NC_011071.1 PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein ShlB-type; KEGG: mms:mma_2380 hemolysin activation/secretion protein; Polypeptide-transport-associated domain-containing protein ShlB-type 2466630 6476531 Smal_2200 Stenotrophomonas maltophilia R551-3 Polypeptide-transport-associated domain-containing protein ShlB-type YP_002028587.1 2465005 R 391008 CDS YP_002028588.1 194365978 6476532 2466823..2467158 1 NC_011071.1 KEGG: reh:H16_A1275 hypothetical protein; hypothetical protein 2467158 6476532 Smal_2201 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028588.1 2466823 D 391008 CDS YP_002028589.1 194365979 6476533 complement(2467250..2467714) 1 NC_011071.1 KEGG: pap:PSPA7_4831 hypothetical protein; hypothetical protein 2467714 6476533 Smal_2202 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028589.1 2467250 R 391008 CDS YP_002028590.1 194365980 6476534 2467818..2468264 1 NC_011071.1 TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN2111 type II secretion system protein G; general secretion pathway protein H 2468264 6476534 Smal_2203 Stenotrophomonas maltophilia R551-3 general secretion pathway protein H YP_002028590.1 2467818 D 391008 CDS YP_002028591.1 194365981 6476535 2468273..2468623 1 NC_011071.1 TIGRFAM: general secretion pathway protein I; KEGG: pap:PSPA7_4830 general secretion pathway protein I; general secretion pathway protein I 2468623 6476535 Smal_2204 Stenotrophomonas maltophilia R551-3 general secretion pathway protein I YP_002028591.1 2468273 D 391008 CDS YP_002028592.1 194365982 6476536 2468620..2469234 1 NC_011071.1 KEGG: pen:PSEEN2110 type II secretion system protein J; type II secretion system protein J 2469234 6476536 Smal_2205 Stenotrophomonas maltophilia R551-3 type II secretion system protein J YP_002028592.1 2468620 D 391008 CDS YP_002028593.1 194365983 6476537 complement(2469696..2482094) 1 NC_011071.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mms:mma_2368 uncharacterized giant conserved protein; filamentous hemagglutinin family outer membrane protein 2482094 6476537 Smal_2206 Stenotrophomonas maltophilia R551-3 filamentous hemagglutinin family outer membrane protein YP_002028593.1 2469696 R 391008 CDS YP_002028594.1 194365984 6476538 complement(2482301..2483488) 1 NC_011071.1 KEGG: pae:PA0688 probable binding protein component of ABC transporter; alkaline phosphatase 2483488 6476538 Smal_2207 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002028594.1 2482301 R 391008 CDS YP_002028595.1 194365985 6476539 complement(2483587..2484780) 1 NC_011071.1 KEGG: pae:PA0688 probable binding protein component of ABC transporter; alkaline phosphatase 2484780 6476539 Smal_2208 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002028595.1 2483587 R 391008 CDS YP_002028596.1 194365986 6476540 complement(2484998..2486197) 1 NC_011071.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pae:PA0687 probable type II secretion system protein; general secretion pathway protein F 2486197 6476540 Smal_2209 Stenotrophomonas maltophilia R551-3 general secretion pathway protein F YP_002028596.1 2484998 R 391008 CDS YP_002028597.1 194365987 6476541 complement(2486205..2487638) 1 NC_011071.1 KEGG: pae:PA0686 probable type II secretion system protein; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 2487638 6476541 Smal_2210 Stenotrophomonas maltophilia R551-3 general secretory pathway protein E YP_002028597.1 2486205 R 391008 CDS YP_002028598.1 194365988 6476542 complement(2487635..2490016) 1 NC_011071.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN2332 type II secretion system protein XcpQ-2; signal peptide; general secretion pathway protein D 2490016 6476542 Smal_2211 Stenotrophomonas maltophilia R551-3 general secretion pathway protein D YP_002028598.1 2487635 R 391008 CDS YP_002028599.1 194365989 6476543 complement(2490013..2490540) 1 NC_011071.1 KEGG: pau:PA14_55460 probable type II secretion system protein; putative type II secretion system protein 2490540 6476543 Smal_2212 Stenotrophomonas maltophilia R551-3 putative type II secretion system protein YP_002028599.1 2490013 R 391008 CDS YP_002028600.1 194365990 6476544 complement(2490537..2491700) 1 NC_011071.1 PFAM: General secretion pathway L; KEGG: pfo:PflO1_3177 probable type II secretion system protein; general secretion pathway protein L 2491700 6476544 Smal_2213 Stenotrophomonas maltophilia R551-3 general secretion pathway protein L YP_002028600.1 2490537 R 391008 CDS YP_002028601.1 194365991 6476545 complement(2491697..2492602) 1 NC_011071.1 PFAM: General secretion pathway protein K; KEGG: pfl:PFL_2753 general secretion pathway protein K; General secretion pathway protein K 2492602 6476545 Smal_2214 Stenotrophomonas maltophilia R551-3 General secretion pathway protein K YP_002028601.1 2491697 R 391008 CDS YP_002028602.1 194365992 6476546 complement(2492612..2493049) 1 NC_011071.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bpt:Bpet2856 general secretion pathway protein G; general secretion pathway protein G 2493049 6476546 Smal_2215 Stenotrophomonas maltophilia R551-3 general secretion pathway protein G YP_002028602.1 2492612 R 391008 CDS YP_002028603.1 194365993 6476547 complement(2493107..2493691) 1 NC_011071.1 KEGG: pfl:PFL_2819 prevent-host-death family protein; hypothetical protein 2493691 6476547 Smal_2216 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028603.1 2493107 R 391008 CDS YP_002028604.1 194365994 6476548 complement(2493812..2494363) 1 NC_011071.1 KEGG: pap:PSPA7_4820 hypothetical protein; hypothetical protein 2494363 6476548 Smal_2217 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028604.1 2493812 R 391008 CDS YP_002028605.1 194365995 6476549 complement(2494422..2495402) 1 NC_011071.1 KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component; Fe2+-dicitrate sensor, membrane protein 2495402 6476549 Smal_2218 Stenotrophomonas maltophilia R551-3 Fe2+-dicitrate sensor, membrane protein YP_002028605.1 2494422 R 391008 CDS YP_002028606.1 194365996 6476550 complement(2495472..2496002) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2496002 6476550 Smal_2219 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028606.1 2495472 R 391008 CDS YP_002028607.1 194365997 6476551 complement(2496019..2496699) 1 NC_011071.1 PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein; Secretin/TonB short domain 2496699 6476551 Smal_2220 Stenotrophomonas maltophilia R551-3 Secretin/TonB short domain YP_002028607.1 2496019 R 391008 CDS YP_002028608.1 194365998 6476552 complement(2497170..2497634) 1 NC_011071.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_I0319 AsnC family regulatory protein; AsnC family transcriptional regulator 2497634 6476552 Smal_2221 Stenotrophomonas maltophilia R551-3 AsnC family transcriptional regulator YP_002028608.1 2497170 R 391008 CDS YP_002028609.1 194365999 6476553 2497762..2498493 1 NC_011071.1 PFAM: AzlC family protein; KEGG: bpd:BURPS668_0362 AzlC family protein; AzlC family protein 2498493 6476553 Smal_2222 Stenotrophomonas maltophilia R551-3 AzlC family protein YP_002028609.1 2497762 D 391008 CDS YP_002028610.1 194366000 6476554 2498490..2498804 1 NC_011071.1 PFAM: branched-chain amino acid transport; KEGG: oan:Oant_3947 branched-chain amino acid transport; branched-chain amino acid transport 2498804 6476554 Smal_2223 Stenotrophomonas maltophilia R551-3 branched-chain amino acid transport YP_002028610.1 2498490 D 391008 CDS YP_002028611.1 194366001 6476555 2499012..2499440 1 NC_011071.1 KEGG: wsu:WS1556 diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2499440 6476555 Smal_2224 Stenotrophomonas maltophilia R551-3 putative PAS/PAC sensor protein YP_002028611.1 2499012 D 391008 CDS YP_002028612.1 194366002 6476556 2499437..2500966 1 NC_011071.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: acr:Acry_2801 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 2500966 6476556 Smal_2225 Stenotrophomonas maltophilia R551-3 flavodoxin/nitric oxide synthase YP_002028612.1 2499437 D 391008 CDS YP_002028613.1 194366003 6476557 complement(2501328..2501996) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B2850 ABC molybdate transporter, ATPase subunit; ABC transporter-like protein 2501996 6476557 Smal_2226 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028613.1 2501328 R 391008 CDS YP_002028614.1 194366004 6476558 complement(2501986..2502669) 1 NC_011071.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA2579 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 2502669 6476558 Smal_2227 Stenotrophomonas maltophilia R551-3 molybdate ABC transporter inner membrane subunit YP_002028614.1 2501986 R 391008 CDS YP_002028615.1 194366005 6476559 complement(2502673..2503416) 1 NC_011071.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: reh:H16_A0677 ABC-type transporter, periplasmic component: MolT family; molybdenum ABC transporter periplasmic molybdate-binding protein 2503416 6476559 Smal_2228 Stenotrophomonas maltophilia R551-3 molybdenum ABC transporter periplasmic molybdate-binding protein YP_002028615.1 2502673 R 391008 CDS YP_002028616.1 194366006 6476560 complement(2503436..2504212) 1 NC_011071.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aeh:Mlg_0319 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 2504212 6476560 Smal_2229 Stenotrophomonas maltophilia R551-3 Crp/Fnr family transcriptional regulator YP_002028616.1 2503436 R 391008 CDS YP_002028617.1 194366007 6476561 complement(2504224..2505447) 1 NC_011071.1 PFAM: HemN domain protein; KEGG: xcb:XC_2090 coproporphyrinogen III oxidase; HemN domain-containing protein 2505447 6476561 Smal_2230 Stenotrophomonas maltophilia R551-3 HemN domain-containing protein YP_002028617.1 2504224 R 391008 CDS YP_002028618.1 194366008 6476644 complement(2505561..2506892) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_3862 major facilitator superfamily MFS_1; major facilitator superfamily protein 2506892 6476644 Smal_2231 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028618.1 2505561 R 391008 CDS YP_002028619.1 194366009 6476645 complement(2506916..2507815) 1 NC_011071.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: csa:Csal_1334 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2507815 6476645 Smal_2232 Stenotrophomonas maltophilia R551-3 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002028619.1 2506916 R 391008 CDS YP_002028620.1 194366010 6476646 complement(2507819..2508526) 1 NC_011071.1 KEGG: abo:ABO_0543 respiratory nitrate reductase 1 gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2508526 6476646 Smal_2233 Stenotrophomonas maltophilia R551-3 respiratory nitrate reductase subunit gamma YP_002028620.1 2507819 R 391008 CDS YP_002028621.1 194366011 6476647 complement(2508523..2509203) 1 NC_011071.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 2509203 6476647 Smal_2234 Stenotrophomonas maltophilia R551-3 nitrate reductase molybdenum cofactor assembly chaperone YP_002028621.1 2508523 R 391008 CDS YP_002028622.1 194366012 6476648 complement(2509203..2510747) 1 NC_011071.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: hch:HCH_04010 nitrate reductase, beta subunit; nitrate reductase subunit beta 2510747 6476648 Smal_2235 Stenotrophomonas maltophilia R551-3 nitrate reductase subunit beta YP_002028622.1 2509203 R 391008 CDS YP_002028623.1 194366013 6476649 complement(2510747..2514490) 1 NC_011071.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: maq:Maqu_3086 nitrate reductase, alpha subunit; nitrate reductase subunit alpha 2514490 6476649 Smal_2236 Stenotrophomonas maltophilia R551-3 nitrate reductase subunit alpha YP_002028623.1 2510747 R 391008 CDS YP_002028624.1 194366014 6476650 complement(2514563..2515981) 1 NC_011071.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_1233 nitrite extrusion protein 2; nitrite transporter 2515981 6476650 Smal_2237 Stenotrophomonas maltophilia R551-3 nitrite transporter YP_002028624.1 2514563 R 391008 CDS YP_002028625.1 194366015 6476651 complement(2516127..2516492) 1 NC_011071.1 KEGG: xom:XOO_2950 hypothetical protein; hypothetical protein 2516492 6476651 Smal_2238 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028625.1 2516127 R 391008 CDS YP_002028626.1 194366016 6476652 complement(2516489..2517037) 1 NC_011071.1 KEGG: xcb:XC_2183 molybdopterin guanine dinucleotide synthase; molybdopterin guanine dinucleotide synthase 2517037 6476652 Smal_2239 Stenotrophomonas maltophilia R551-3 molybdopterin guanine dinucleotide synthase YP_002028626.1 2516489 R 391008 CDS YP_002028627.1 194366017 6476653 complement(2517074..2517574) 1 NC_011071.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: syf:Synpcc7942_1283 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein 2517574 6476653 Smal_2240 Stenotrophomonas maltophilia R551-3 molybdopterin biosynthesis MoaE protein YP_002028627.1 2517074 R 391008 CDS YP_002028628.1 194366018 6476654 complement(2517578..2517838) 1 NC_011071.1 PFAM: thiamineS protein; KEGG: ade:Adeh_1120 molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD; sulfur transfer protein ThiS 2517838 6476654 Smal_2241 Stenotrophomonas maltophilia R551-3 sulfur transfer protein ThiS YP_002028628.1 2517578 R 391008 CDS YP_002028629.1 194366019 6476655 complement(2517838..2519091) 1 NC_011071.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: xcv:XCV2083 molybdopterin biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein 2519091 6476655 Smal_2242 Stenotrophomonas maltophilia R551-3 molybdenum cofactor synthesis domain-containing protein YP_002028629.1 2517838 R 391008 CDS YP_002028630.1 194366020 6476656 complement(2519091..2520086) 1 NC_011071.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA 2520086 moaC 6476656 moaC Stenotrophomonas maltophilia R551-3 bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA YP_002028630.1 2519091 R 391008 CDS YP_002028631.1 194366021 6476657 complement(2520095..2521075) 1 NC_011071.1 KEGG: asa:ASA_2774 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 2521075 6476657 Smal_2244 Stenotrophomonas maltophilia R551-3 molybdenum cofactor biosynthesis protein A YP_002028631.1 2520095 R 391008 CDS YP_002028632.1 194366022 6476658 2521270..2521674 1 NC_011071.1 KEGG: psa:PST_3997 ribonucleotide reductase, alpha subunit; ribonucleotide reductase subunit alpha 2521674 6476658 Smal_2245 Stenotrophomonas maltophilia R551-3 ribonucleotide reductase subunit alpha YP_002028632.1 2521270 D 391008 CDS YP_002028633.1 194366023 6476659 complement(2521668..2521997) 1 NC_011071.1 KEGG: nar:Saro_1049 RhaT L-rhamnose-proton symport 2; hypothetical protein 2521997 6476659 Smal_2246 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028633.1 2521668 R 391008 CDS YP_002028634.1 194366024 6476660 2522567..2522941 1 NC_011071.1 hypothetical protein 2522941 6476660 Smal_2247 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028634.1 2522567 D 391008 CDS YP_002028635.1 194366025 6476661 complement(2522987..2523322) 1 NC_011071.1 KEGG: art:Arth_0991 hypothetical protein; hypothetical protein 2523322 6476661 Smal_2248 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028635.1 2522987 R 391008 CDS YP_002028636.1 194366026 6476663 complement(2523842..2524183) 1 NC_011071.1 hypothetical protein 2524183 6476663 Smal_2250 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028636.1 2523842 R 391008 CDS YP_002028637.1 194366027 6476664 complement(2524422..2529155) 1 NC_011071.1 TIGRFAM: YD repeat protein; KEGG: xcb:XC_0136 RhsD protein; YD repeat-containing protein 2529155 6476664 Smal_2251 Stenotrophomonas maltophilia R551-3 YD repeat-containing protein YP_002028637.1 2524422 R 391008 CDS YP_002028638.1 194366028 6476665 complement(2529597..2530391) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bch:Bcen2424_3244 transcriptional regulator, AraC family; AraC family transcriptional regulator 2530391 6476665 Smal_2252 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028638.1 2529597 R 391008 CDS YP_002028639.1 194366029 6476666 2530471..2532432 1 NC_011071.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: rpc:RPC_1992 fusaric acid resistance protein conserved region; fusaric acid resistance protein 2532432 6476666 Smal_2253 Stenotrophomonas maltophilia R551-3 fusaric acid resistance protein YP_002028639.1 2530471 D 391008 CDS YP_002028640.1 194366030 6476667 2532437..2532646 1 NC_011071.1 PFAM: protein of unknown function DUF1656; KEGG: rpa:RPA2708a hypothetical membrane protein; hypothetical protein 2532646 6476667 Smal_2254 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028640.1 2532437 D 391008 CDS YP_002028641.1 194366031 6476668 2532648..2533532 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1991 secretion protein HlyD; secretion protein HlyD family protein 2533532 6476668 Smal_2255 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002028641.1 2532648 D 391008 CDS YP_002028642.1 194366032 6476669 2533529..2534965 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bbr:BB3084 probable outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2534965 6476669 Smal_2256 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002028642.1 2533529 D 391008 CDS YP_002028643.1 194366033 6476670 2535100..2535447 1 NC_011071.1 KEGG: bte:BTH_I0992 hypothetical protein; hypothetical protein 2535447 6476670 Smal_2257 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028643.1 2535100 D 391008 CDS YP_002028644.1 194366034 6476671 2535557..2536099 1 NC_011071.1 hypothetical protein 2536099 6476671 Smal_2258 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028644.1 2535557 D 391008 CDS YP_002028645.1 194366035 6476672 2536096..2536239 1 NC_011071.1 hypothetical protein 2536239 6476672 Smal_2259 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028645.1 2536096 D 391008 CDS YP_002028646.1 194366036 6476673 2536324..2536851 1 NC_011071.1 KEGG: fjo:Fjoh_0994 hypothetical protein; hypothetical protein 2536851 6476673 Smal_2260 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028646.1 2536324 D 391008 CDS YP_002028647.1 194366037 6476674 2536901..2537527 1 NC_011071.1 hypothetical protein 2537527 6476674 Smal_2261 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028647.1 2536901 D 391008 CDS YP_002028648.1 194366038 6476675 2537610..2538002 1 NC_011071.1 PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase 2538002 6476675 Smal_2262 Stenotrophomonas maltophilia R551-3 diacylglycerol kinase YP_002028648.1 2537610 D 391008 CDS YP_002028649.1 194366039 6476676 complement(2538052..2538972) 1 NC_011071.1 KEGG: mxa:MXAN_5214 hypothetical protein; hypothetical protein 2538972 6476676 Smal_2263 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028649.1 2538052 R 391008 CDS YP_002028650.1 194366040 6476677 2539118..2539771 1 NC_011071.1 KEGG: xcv:XCV3871 hypothetical protein; hypothetical protein 2539771 6476677 Smal_2264 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028650.1 2539118 D 391008 CDS YP_002028651.1 194366041 6476678 2539782..2542046 1 NC_011071.1 PFAM: protein of unknown function DUF802; KEGG: bte:BTH_II1149 domain of unknown function (DUF802) family; hypothetical protein 2542046 6476678 Smal_2265 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028651.1 2539782 D 391008 CDS YP_002028652.1 194366042 6476679 2542043..2542681 1 NC_011071.1 PFAM: OmpA/MotB domain protein; KEGG: xcb:XC_3783 hypothetical protein; hypothetical protein 2542681 6476679 Smal_2266 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028652.1 2542043 D 391008 CDS YP_002028653.1 194366043 6476680 2542671..2543048 1 NC_011071.1 KEGG: xcb:XC_3784 hypothetical protein; hypothetical protein 2543048 6476680 Smal_2267 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028653.1 2542671 D 391008 CDS YP_002028654.1 194366044 6476681 2543439..2544404 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2544404 6476681 Smal_2268 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002028654.1 2543439 D 391008 CDS YP_002028655.1 194366045 6476682 2544603..2546921 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_4325 TonB-dependent receptor; TonB-dependent receptor 2546921 6476682 Smal_2269 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028655.1 2544603 D 391008 CDS YP_002028656.1 194366046 6476683 2546943..2548403 1 NC_011071.1 KEGG: swi:Swit_1485 hypothetical protein; hypothetical protein 2548403 6476683 Smal_2270 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028656.1 2546943 D 391008 CDS YP_002028657.1 194366047 6476684 complement(2548523..2549281) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: pde:Pden_2384 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2549281 6476684 Smal_2271 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028657.1 2548523 R 391008 CDS YP_002028658.1 194366048 6476685 complement(2549272..2553162) 1 NC_011071.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 2553162 entF 6476685 entF Stenotrophomonas maltophilia R551-3 enterobactin synthase subunit F YP_002028658.1 2549272 R 391008 CDS YP_002028659.1 194366049 6476686 complement(2553159..2553416) 1 NC_011071.1 PFAM: phosphopantetheine-binding; KEGG: scl:sce3881 isochorismatase; phosphopantetheine-binding protein 2553416 6476686 Smal_2273 Stenotrophomonas maltophilia R551-3 phosphopantetheine-binding protein YP_002028659.1 2553159 R 391008 CDS YP_002028660.1 194366050 6476687 complement(2553413..2554048) 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: pde:Pden_2383 isochorismatase; isochorismatase 2554048 6476687 Smal_2274 Stenotrophomonas maltophilia R551-3 isochorismatase YP_002028660.1 2553413 R 391008 CDS YP_002028661.1 194366051 6476688 complement(2554048..2555700) 1 NC_011071.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_3645 2,3-dihydroxybenzoate-AMP ligase; AMP-dependent synthetase and ligase 2555700 6476688 Smal_2275 Stenotrophomonas maltophilia R551-3 AMP-dependent synthetase and ligase YP_002028661.1 2554048 R 391008 CDS YP_002028662.1 194366052 6476689 complement(2555697..2556890) 1 NC_011071.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: pde:Pden_2382 isochorismate synthases; isochorismate synthase 2556890 6476689 Smal_2276 Stenotrophomonas maltophilia R551-3 isochorismate synthase YP_002028662.1 2555697 R 391008 CDS YP_002028663.1 194366053 6476690 complement(2556887..2558083) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_3503 transporter, putative; major facilitator superfamily protein 2558083 6476690 Smal_2277 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028663.1 2556887 R 391008 CDS YP_002028664.1 194366054 6476691 complement(2558238..2558567) 1 NC_011071.1 KEGG: xcb:XC_0609 inner membrane protein; inner membrane protein 2558567 6476691 Smal_2278 Stenotrophomonas maltophilia R551-3 inner membrane protein YP_002028664.1 2558238 R 391008 CDS YP_002028665.1 194366055 6476692 complement(2558703..2559638) 1 NC_011071.1 PFAM: Luciferase-like monooxygenase; KEGG: cef:CE2119 hypothetical protein; luciferase-like monooxygenase 2559638 6476692 Smal_2279 Stenotrophomonas maltophilia R551-3 luciferase-like monooxygenase YP_002028665.1 2558703 R 391008 CDS YP_002028666.1 194366056 6476693 2559705..2560154 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_2146 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2560154 6476693 Smal_2280 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028666.1 2559705 D 391008 CDS YP_002028667.1 194366057 6476694 2560274..2561788 1 NC_011071.1 PFAM: Thioredoxin domain; KEGG: xcv:XCV3996 putative disulphide-isomerase precursor; Thioredoxin domain 2561788 6476694 Smal_2281 Stenotrophomonas maltophilia R551-3 Thioredoxin domain YP_002028667.1 2560274 D 391008 CDS YP_002028668.1 194366058 6476695 2562073..2562702 1 NC_011071.1 PFAM: manganese and iron superoxide dismutase; KEGG: dac:Daci_2970 superoxide dismutase; Superoxide dismutase 2562702 6476695 Smal_2282 Stenotrophomonas maltophilia R551-3 Superoxide dismutase YP_002028668.1 2562073 D 391008 CDS YP_002028669.1 194366059 6476696 2562699..2563274 1 NC_011071.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: rso:RSc1836 hypothetical protein; flavin reductase domain-containing protein 2563274 6476696 Smal_2283 Stenotrophomonas maltophilia R551-3 flavin reductase domain-containing protein YP_002028669.1 2562699 D 391008 CDS YP_002028670.1 194366060 6476697 2563271..2563609 1 NC_011071.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: psa:PST_0013 hypothetical protein; hypothetical protein 2563609 6476697 Smal_2284 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028670.1 2563271 D 391008 CDS YP_002028671.1 194366061 6476698 complement(2563615..2564763) 1 NC_011071.1 PFAM: fatty acid desaturase; KEGG: xac:XAC3959 hypothetical protein; fatty acid desaturase 2564763 6476698 Smal_2285 Stenotrophomonas maltophilia R551-3 fatty acid desaturase YP_002028671.1 2563615 R 391008 CDS YP_002028672.1 194366062 6476699 complement(2564776..2565885) 1 NC_011071.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xom:XOO_4187 oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2565885 6476699 Smal_2286 Stenotrophomonas maltophilia R551-3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002028672.1 2564776 R 391008 CDS YP_002028673.1 194366063 6476700 2565939..2566595 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcb:XC_3966 transcriptional regulator TetR family; TetR family transcriptional regulator 2566595 6476700 Smal_2287 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028673.1 2565939 D 391008 CDS YP_002028674.1 194366064 6476701 2566958..2569378 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: ent:Ent638_4206 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 2569378 6476701 Smal_2288 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002028674.1 2566958 D 391008 CDS YP_002028675.1 194366065 6476702 2569638..2571797 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0504 TonB-dependent outer membrane receptor; TonB-dependent receptor plug 2571797 6476702 Smal_2289 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002028675.1 2569638 D 391008 CDS YP_002028676.1 194366066 6476703 2571787..2572347 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: spu:759710 similar to nucleoredoxin; alkyl hydroperoxide reductase 2572347 6476703 Smal_2290 Stenotrophomonas maltophilia R551-3 alkyl hydroperoxide reductase YP_002028676.1 2571787 D 391008 CDS YP_002028677.1 194366067 6476704 complement(2572416..2572886) 1 NC_011071.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 2572886 6476704 Smal_2291 Stenotrophomonas maltophilia R551-3 manganese transport regulator MntR YP_002028677.1 2572416 R 391008 CDS YP_002028678.1 194366068 6476705 2573004..2574335 1 NC_011071.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: xcv:XCV2197 manganese transport protein MntH; NRAMP family Mn2+/Fe2+ transporter 2574335 6476705 Smal_2292 Stenotrophomonas maltophilia R551-3 NRAMP family Mn2+/Fe2+ transporter YP_002028678.1 2573004 D 391008 CDS YP_002028679.1 194366069 6476706 complement(2574477..2574803) 1 NC_011071.1 PFAM: Thioredoxin domain; KEGG: xac:XAC4072 thioredoxin; Thioredoxin domain 2574803 6476706 Smal_2293 Stenotrophomonas maltophilia R551-3 Thioredoxin domain YP_002028679.1 2574477 R 391008 CDS YP_002028680.1 194366070 6476707 complement(2574775..2575239) 1 NC_011071.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 2575239 6476707 Smal_2294 Stenotrophomonas maltophilia R551-3 flavodoxin YP_002028680.1 2574775 R 391008 CDS YP_002028681.1 194366071 6476708 complement(2575268..2576308) 1 NC_011071.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2576308 nrdF 6476708 nrdF Stenotrophomonas maltophilia R551-3 ribonucleotide-diphosphate reductase subunit beta YP_002028681.1 2575268 R 391008 CDS YP_002028682.1 194366072 6476709 complement(2576417..2578780) 1 NC_011071.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2578780 6476709 Smal_2296 Stenotrophomonas maltophilia R551-3 ribonucleotide-diphosphate reductase subunit alpha YP_002028682.1 2576417 R 391008 CDS YP_002028683.1 194366073 6476710 2579211..2580188 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pcr:Pcryo_0019 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein 2580188 6476710 Smal_2297 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase zinc-binding domain-containing protein YP_002028683.1 2579211 D 391008 CDS YP_002028684.1 194366074 6476711 2580415..2583039 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL2488 outer membrane protein; TonB-dependent receptor 2583039 6476711 Smal_2298 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028684.1 2580415 D 391008 CDS YP_002028685.1 194366075 6476712 complement(2583132..2585111) 1 NC_011071.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: xcc:XCC3402 high-affinity choline transport; choline/carnitine/betaine transporter 2585111 6476712 Smal_2299 Stenotrophomonas maltophilia R551-3 choline/carnitine/betaine transporter YP_002028685.1 2583132 R 391008 CDS YP_002028686.1 194366076 6476783 complement(2585307..2585687) 1 NC_011071.1 KEGG: hne:HNE_0558 glyoxalase family protein; glyoxalase family protein 2585687 6476783 Smal_2300 Stenotrophomonas maltophilia R551-3 glyoxalase family protein YP_002028686.1 2585307 R 391008 CDS YP_002028687.1 194366077 6476784 2585827..2586351 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2586351 6476784 Smal_2301 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028687.1 2585827 D 391008 CDS YP_002028688.1 194366078 6476785 2586348..2587292 1 NC_011071.1 PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 2587292 6476785 Smal_2302 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002028688.1 2586348 D 391008 CDS YP_002028689.1 194366079 6476786 2587362..2590310 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR; TonB-dependent receptor 2590310 6476786 Smal_2303 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028689.1 2587362 D 391008 CDS YP_002028690.1 194366080 6476787 complement(2590453..2590776) 1 NC_011071.1 PFAM: small multidrug resistance protein; KEGG: cvi:CV_1278 probable multidrug transmembrane resistance signal peptide protein; small multidrug resistance protein 2590776 6476787 Smal_2304 Stenotrophomonas maltophilia R551-3 small multidrug resistance protein YP_002028690.1 2590453 R 391008 CDS YP_002028691.1 194366081 6476788 complement(2590776..2591129) 1 NC_011071.1 PFAM: small multidrug resistance protein; KEGG: cvi:CV_1279 probable multidrug transmembrane resistance signal peptide protein; small multidrug resistance protein 2591129 6476788 Smal_2305 Stenotrophomonas maltophilia R551-3 small multidrug resistance protein YP_002028691.1 2590776 R 391008 CDS YP_002028692.1 194366082 6476789 2591290..2592141 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1223 putative LysR-family transcriptional regulatory protein; LysR family transcriptional regulator 2592141 6476789 Smal_2306 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028692.1 2591290 D 391008 CDS YP_002028693.1 194366083 6476790 complement(2592243..2593163) 1 NC_011071.1 KEGG: xcv:XCV2100 hypothetical protein; hypothetical protein 2593163 6476790 Smal_2307 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028693.1 2592243 R 391008 CDS YP_002028694.1 194366084 6476791 2593295..2595376 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reu:Reut_B4646 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2595376 6476791 Smal_2308 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002028694.1 2593295 D 391008 CDS YP_002028695.1 194366085 6476792 2595439..2597211 1 NC_011071.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: xcv:XCV3892 voltage gated chloride channel family protein; chloride channel core protein 2597211 6476792 Smal_2309 Stenotrophomonas maltophilia R551-3 chloride channel core protein YP_002028695.1 2595439 D 391008 CDS YP_002028696.1 194366086 6476793 2597314..2598030 1 NC_011071.1 PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein; MgtC/SapB transporter 2598030 6476793 Smal_2310 Stenotrophomonas maltophilia R551-3 MgtC/SapB transporter YP_002028696.1 2597314 D 391008 CDS YP_002028697.1 194366087 6476794 complement(2598046..2598453) 1 NC_011071.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pap:PSPA7_5849 probable transcriptional regulator; MerR family transcriptional regulator 2598453 6476794 Smal_2311 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002028697.1 2598046 R 391008 CDS YP_002028698.1 194366088 6476795 2598517..2599344 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cti:RALTA_A0018 conserved hypothetical protein; putative methyltransferase; type 11 methyltransferase 2599344 6476795 Smal_2312 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002028698.1 2598517 D 391008 CDS YP_002028699.1 194366089 6476796 complement(2599427..2599729) 1 NC_011071.1 hypothetical protein 2599729 6476796 Smal_2313 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028699.1 2599427 R 391008 CDS YP_002028700.1 194366090 6476797 complement(2599839..2600675) 1 NC_011071.1 PFAM: OmpA/MotB domain protein; SmpA/OmlA domain protein; KEGG: bte:BTH_II1488 outer membrane lipoprotein, OmpA/SmpA/OmlA family; OmpA/MotB domain-containing protein 2600675 6476797 Smal_2314 Stenotrophomonas maltophilia R551-3 OmpA/MotB domain-containing protein YP_002028700.1 2599839 R 391008 CDS YP_002028701.1 194366091 6476798 complement(2600737..2605878) 1 NC_011071.1 PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: ecc:c4424 putative adhesin; YadA domain-containing protein 2605878 6476798 Smal_2315 Stenotrophomonas maltophilia R551-3 YadA domain-containing protein YP_002028701.1 2600737 R 391008 CDS YP_002028702.1 194366092 6476799 complement(2606114..2607124) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A4440 transcriptional regulator, AraC family; AraC family transcriptional regulator 2607124 6476799 Smal_2316 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028702.1 2606114 R 391008 CDS YP_002028703.1 194366093 6476800 2607787..2607978 1 NC_011071.1 PFAM: Flp/Fap pilin component; KEGG: bmu:Bmul_1736 Flp/Fap pilin component; Flp/Fap pilin component 2607978 6476800 Smal_2317 Stenotrophomonas maltophilia R551-3 Flp/Fap pilin component YP_002028703.1 2607787 D 391008 CDS YP_002028704.1 194366094 6476801 2608045..2608590 1 NC_011071.1 PFAM: peptidase A24A prepilin type IV; KEGG: rso:RSp1091 probable prepilin peptidase transmembrane protein; peptidase A24A prepilin type IV 2608590 6476801 Smal_2318 Stenotrophomonas maltophilia R551-3 peptidase A24A prepilin type IV YP_002028704.1 2608045 D 391008 CDS YP_002028705.1 194366095 6476802 2608587..2609063 1 NC_011071.1 PFAM: TadE family protein; KEGG: bte:BTH_I2544 hypothetical protein; TadE family protein 2609063 6476802 Smal_2319 Stenotrophomonas maltophilia R551-3 TadE family protein YP_002028705.1 2608587 D 391008 CDS YP_002028706.1 194366096 6476803 2609087..2610124 1 NC_011071.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mms:mma_3317 CpaB pilus assembly protein; Flp pilus assembly protein CpaB 2610124 6476803 Smal_2320 Stenotrophomonas maltophilia R551-3 Flp pilus assembly protein CpaB YP_002028706.1 2609087 D 391008 CDS YP_002028707.1 194366097 6476804 2610143..2611501 1 NC_011071.1 PFAM: type II and III secretion system protein; KEGG: mms:mma_3316 pilus assembly protein CpaC; type II and III secretion system protein 2611501 6476804 Smal_2321 Stenotrophomonas maltophilia R551-3 type II and III secretion system protein YP_002028707.1 2610143 D 391008 CDS YP_002028708.1 194366098 6476805 2611574..2612785 1 NC_011071.1 KEGG: bur:Bcep18194_A4662 response regulator receiver domain protein (CheY-like); response regulator receiver domain-containing protein (CheY-like) 2612785 6476805 Smal_2322 Stenotrophomonas maltophilia R551-3 response regulator receiver domain-containing protein (CheY-like) YP_002028708.1 2611574 D 391008 CDS YP_002028709.1 194366099 6476806 2612770..2614119 1 NC_011071.1 PFAM: type II secretion system protein E; KEGG: bpd:BURPS668_1770 type II/IV secretion system protein; type II secretion system protein E 2614119 6476806 Smal_2323 Stenotrophomonas maltophilia R551-3 type II secretion system protein E YP_002028709.1 2612770 D 391008 CDS YP_002028710.1 194366100 6476807 2614122..2615078 1 NC_011071.1 PFAM: type II secretion system protein; KEGG: mms:mma_3313 Flp pilus assembly protein TadB; type II secretion system protein 2615078 6476807 Smal_2324 Stenotrophomonas maltophilia R551-3 type II secretion system protein YP_002028710.1 2614122 D 391008 CDS YP_002028711.1 194366101 6476808 2615107..2616042 1 NC_011071.1 PFAM: type II secretion system protein; KEGG: dac:Daci_2068 type II secretion system protein; type II secretion system protein 2616042 6476808 Smal_2325 Stenotrophomonas maltophilia R551-3 type II secretion system protein YP_002028711.1 2615107 D 391008 CDS YP_002028712.1 194366102 6476809 2616042..2616962 1 NC_011071.1 PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: reh:H16_B0190 flp pilus assembly protein TadD; hypothetical protein 2616962 6476809 Smal_2326 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028712.1 2616042 D 391008 CDS YP_002028713.1 194366103 6476810 2616959..2617399 1 NC_011071.1 KEGG: bbr:BB1832 hypothetical protein; hypothetical protein 2617399 6476810 Smal_2327 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028713.1 2616959 D 391008 CDS YP_002028714.1 194366104 6476811 2617408..2619561 1 NC_011071.1 KEGG: dac:Daci_2063 membrane protein-like protein; hypothetical protein 2619561 6476811 Smal_2328 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028714.1 2617408 D 391008 CDS YP_002028715.1 194366105 6476812 2619661..2620374 1 NC_011071.1 KEGG: bpt:Bpet3370 putative lipoprotein; hypothetical protein 2620374 6476812 Smal_2329 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028715.1 2619661 D 391008 CDS YP_002028716.1 194366106 6476813 complement(2620449..2620832) 1 NC_011071.1 KEGG: xcv:XCV2462 putative secreted protein; hypothetical protein 2620832 6476813 Smal_2330 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028716.1 2620449 R 391008 CDS YP_002028717.1 194366107 6476814 2621021..2621845 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1946 non-heme chloroperoxidase; alpha/beta hydrolase fold domain-containing protein 2621845 6476814 Smal_2331 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002028717.1 2621021 D 391008 CDS YP_002028718.1 194366108 6476815 complement(2621960..2623609) 1 NC_011071.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: xcb:XC_1944 MFS transporter; hypothetical protein 2623609 6476815 Smal_2332 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028718.1 2621960 R 391008 CDS YP_002028719.1 194366109 6476816 complement(2623603..2624886) 1 NC_011071.1 KEGG: gsu:GSU0801 hypothetical protein; hypothetical protein 2624886 6476816 Smal_2333 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028719.1 2623603 R 391008 CDS YP_002028720.1 194366110 6476817 complement(2624865..2626835) 1 NC_011071.1 PFAM: Amidohydrolase 3; KEGG: xcb:XC_1943 hypothetical protein; amidohydrolase 2626835 6476817 Smal_2334 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002028720.1 2624865 R 391008 CDS YP_002028721.1 194366111 6476818 complement(2626832..2627257) 1 NC_011071.1 PFAM: DoxX family protein; KEGG: xcb:XC_1942 hypothetical protein; DoxX family protein 2627257 6476818 Smal_2335 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002028721.1 2626832 R 391008 CDS YP_002028722.1 194366112 6476819 complement(2627260..2627916) 1 NC_011071.1 PFAM: isochorismatase hydrolase; KEGG: xac:XAC2165 hydrolase; isochorismatase hydrolase 2627916 6476819 Smal_2336 Stenotrophomonas maltophilia R551-3 isochorismatase hydrolase YP_002028722.1 2627260 R 391008 CDS YP_002028723.1 194366113 6476820 complement(2627913..2628329) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_1940 transcriptional regulator; AraC family transcriptional regulator 2628329 6476820 Smal_2337 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028723.1 2627913 R 391008 CDS YP_002028724.1 194366114 6476821 complement(2628407..2628739) 1 NC_011071.1 KEGG: aba:Acid345_2444 hypothetical protein; hypothetical protein 2628739 6476821 Smal_2338 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028724.1 2628407 R 391008 CDS YP_002028725.1 194366115 6476822 2628836..2631865 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; Two component regulator three Y domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcb:XC_1939 two-component system sensor protein; histidine kinase 2631865 6476822 Smal_2339 Stenotrophomonas maltophilia R551-3 histidine kinase YP_002028725.1 2628836 D 391008 CDS YP_002028726.1 194366116 6476823 2631858..2632511 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcv:XCV2187 two-component system regulatory protein, LuxR family; two component LuxR family transcriptional regulator 2632511 6476823 Smal_2340 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002028726.1 2631858 D 391008 CDS YP_002028727.1 194366117 6476824 complement(2632734..2634050) 1 NC_011071.1 PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; BAAT/Acyl-CoA thioester hydrolase; KEGG: pth:PTH_2363 hydrolases of the alpha/beta superfamily; BAAT/Acyl-CoA thioester hydrolase 2634050 6476824 Smal_2341 Stenotrophomonas maltophilia R551-3 BAAT/Acyl-CoA thioester hydrolase YP_002028727.1 2632734 R 391008 CDS YP_002028728.1 194366118 6476825 complement(2634164..2634886) 1 NC_011071.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: ote:Oter_0067 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator 2634886 6476825 Smal_2342 Stenotrophomonas maltophilia R551-3 LytTR family two component transcriptional regulator YP_002028728.1 2634164 R 391008 CDS YP_002028729.1 194366119 6476826 complement(2634883..2635968) 1 NC_011071.1 PFAM: histidine kinase internal region; KEGG: cvi:CV_0103 probable two-component system sensor protein; histidine kinase internal region 2635968 6476826 Smal_2343 Stenotrophomonas maltophilia R551-3 histidine kinase internal region YP_002028729.1 2634883 R 391008 CDS YP_002028730.1 194366120 6476827 complement(2636105..2637562) 1 NC_011071.1 PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase; amidohydrolase 2637562 6476827 Smal_2344 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002028730.1 2636105 R 391008 CDS YP_002028731.1 194366121 6476828 complement(2637614..2638315) 1 NC_011071.1 PFAM: Ankyrin; KEGG: bav:BAV1818 ankyrin repeat-containing exported protein; ankyrin 2638315 6476828 Smal_2345 Stenotrophomonas maltophilia R551-3 ankyrin YP_002028731.1 2637614 R 391008 CDS YP_002028732.1 194366122 6476829 2638438..2639319 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 2639319 6476829 Smal_2346 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028732.1 2638438 D 391008 CDS YP_002028733.1 194366123 6476830 2639487..2639924 1 NC_011071.1 KEGG: bfr:BF1581 hypothetical protein; hypothetical protein 2639924 6476830 Smal_2347 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028733.1 2639487 D 391008 CDS YP_002028734.1 194366124 6476831 complement(2639974..2641167) 1 NC_011071.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 2641167 6476831 Smal_2348 Stenotrophomonas maltophilia R551-3 cytosine deaminase YP_002028734.1 2639974 R 391008 CDS YP_002028735.1 194366125 6476832 2641318..2641959 1 NC_011071.1 KEGG: met:M446_3051 hypothetical protein; hypothetical protein 2641959 6476832 Smal_2349 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028735.1 2641318 D 391008 CDS YP_002028736.1 194366126 6476833 complement(2642006..2642443) 1 NC_011071.1 hypothetical protein 2642443 6476833 Smal_2350 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028736.1 2642006 R 391008 CDS YP_002028737.1 194366127 6476834 complement(2642730..2642948) 1 NC_011071.1 hypothetical protein 2642948 6476834 Smal_2351 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028737.1 2642730 R 391008 CDS YP_002028738.1 194366128 6476835 2643228..2644607 1 NC_011071.1 KEGG: bpm:BURPS1710b_A1616 hypothetical protein; hypothetical protein 2644607 6476835 Smal_2352 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028738.1 2643228 D 391008 CDS YP_002028739.1 194366129 6476836 complement(2644665..2647391) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cvi:CV_1019 probable TonB-dependent receptor; TonB-dependent receptor 2647391 6476836 Smal_2353 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028739.1 2644665 R 391008 CDS YP_002028740.1 194366130 6476837 2647611..2648210 1 NC_011071.1 KEGG: mes:Meso_0758 GCN5-related N-acetyltransferase; hypothetical protein 2648210 6476837 Smal_2354 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028740.1 2647611 D 391008 CDS YP_002028741.1 194366131 6476838 complement(2648207..2648986) 1 NC_011071.1 PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: xcb:XC_2537 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 2648986 6476838 Smal_2355 Stenotrophomonas maltophilia R551-3 CDP-diacylglycerol pyrophosphatase YP_002028741.1 2648207 R 391008 CDS YP_002028742.1 194366132 6476839 complement(2649055..2649711) 1 NC_011071.1 hypothetical protein 2649711 6476839 Smal_2356 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028742.1 2649055 R 391008 CDS YP_002028743.1 194366133 6476840 2649883..2650179 1 NC_011071.1 KEGG: xcb:XC_0033 hypothetical protein; hypothetical protein 2650179 6476840 Smal_2357 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028743.1 2649883 D 391008 CDS YP_002028744.1 194366134 6476841 complement(2650275..2651159) 1 NC_011071.1 KEGG: ccr:CC_0866 hypothetical protein; hypothetical protein 2651159 6476841 Smal_2358 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028744.1 2650275 R 391008 CDS YP_002028745.1 194366135 6476842 complement(2651322..2653028) 1 NC_011071.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2653028 6476842 Smal_2359 Stenotrophomonas maltophilia R551-3 D-lactate dehydrogenase YP_002028745.1 2651322 R 391008 CDS YP_002028746.1 194366136 6476843 complement(2653025..2654164) 1 NC_011071.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: xcv:XCV0110 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 2654164 6476843 Smal_2360 Stenotrophomonas maltophilia R551-3 FMN-dependent alpha-hydroxy acid dehydrogenase YP_002028746.1 2653025 R 391008 CDS YP_002028747.1 194366137 6476844 complement(2654169..2654933) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cko:CKO_05060 hypothetical protein; GntR family transcriptional regulator 2654933 6476844 Smal_2361 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002028747.1 2654169 R 391008 CDS YP_002028748.1 194366138 6476845 complement(2654987..2656645) 1 NC_011071.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: cko:CKO_05059 hypothetical protein; L-lactate transport 2656645 6476845 Smal_2362 Stenotrophomonas maltophilia R551-3 L-lactate transport YP_002028748.1 2654987 R 391008 CDS YP_002028749.1 194366139 6476846 complement(2656868..2657320) 1 NC_011071.1 PFAM: MgtC/SapB transporter; KEGG: hch:HCH_00686 uncharacterized membrane protein; MgtC/SapB transporter 2657320 6476846 Smal_2363 Stenotrophomonas maltophilia R551-3 MgtC/SapB transporter YP_002028749.1 2656868 R 391008 CDS YP_002028750.1 194366140 6476847 complement(2657450..2658208) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmw:Mmwyl1_2434 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2658208 6476847 Smal_2364 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002028750.1 2657450 R 391008 CDS YP_002028751.1 194366141 6476848 2658654..2659607 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator; AraC family transcriptional regulator 2659607 6476848 Smal_2365 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028751.1 2658654 D 391008 CDS YP_002028752.1 194366142 6476849 complement(2659653..2661506) 1 NC_011071.1 hypothetical protein 2661506 6476849 Smal_2366 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028752.1 2659653 R 391008 CDS YP_002028753.1 194366143 6476850 complement(2661639..2663576) 1 NC_011071.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: xcb:XC_1881 glutaryl-7-ACA acylase precursor; X-Pro dipeptidyl-peptidase domain-containing protein 2663576 6476850 Smal_2367 Stenotrophomonas maltophilia R551-3 X-Pro dipeptidyl-peptidase domain-containing protein YP_002028753.1 2661639 R 391008 CDS YP_002028754.1 194366144 6476851 complement(2663752..2664138) 1 NC_011071.1 KEGG: pap:PSPA7_4077 hypothetical protein; hypothetical protein 2664138 6476851 Smal_2368 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028754.1 2663752 R 391008 CDS YP_002028755.1 194366145 6476852 complement(2664138..2665496) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:PflO1_0943 major facilitator superfamily MFS_1; major facilitator superfamily protein 2665496 6476852 Smal_2369 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028755.1 2664138 R 391008 CDS YP_002028756.1 194366146 6476853 2665602..2666498 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0944 transcriptional regulator, LysR family; LysR family transcriptional regulator 2666498 6476853 Smal_2370 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028756.1 2665602 D 391008 CDS YP_002028757.1 194366147 6476854 complement(2666597..2669392) 1 NC_011071.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: xcv:XCV1505 beta-glucosidase precursor; beta-glucosidase 2669392 6476854 Smal_2371 Stenotrophomonas maltophilia R551-3 beta-glucosidase YP_002028757.1 2666597 R 391008 CDS YP_002028758.1 194366148 6476855 2669731..2670165 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pau:PA14_09780 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 2670165 6476855 Smal_2372 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002028758.1 2669731 D 391008 CDS YP_002028759.1 194366149 6476856 2670454..2671158 1 NC_011071.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_4540 transcriptional regulator, AraC family; AraC family transcriptional regulator 2671158 6476856 Smal_2373 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002028759.1 2670454 D 391008 CDS YP_002028760.1 194366150 6476857 complement(2671168..2672058) 1 NC_011071.1 PFAM: fatty acid hydroxylase; KEGG: pap:PSPA7_4808 hypothetical protein; fatty acid hydroxylase 2672058 6476857 Smal_2374 Stenotrophomonas maltophilia R551-3 fatty acid hydroxylase YP_002028760.1 2671168 R 391008 CDS YP_002028761.1 194366151 6476858 2672238..2673143 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_4036 transcriptional regulator, LysR family; LysR family transcriptional regulator 2673143 6476858 Smal_2375 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028761.1 2672238 D 391008 CDS YP_002028762.1 194366152 6476859 2673236..2673886 1 NC_011071.1 PFAM: DSBA oxidoreductase; KEGG: sit:TM1040_3237 DsbA oxidoreductase; DSBA oxidoreductase 2673886 6476859 Smal_2376 Stenotrophomonas maltophilia R551-3 DSBA oxidoreductase YP_002028762.1 2673236 D 391008 CDS YP_002028763.1 194366153 6476860 2673922..2674929 1 NC_011071.1 PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; cyclase family protein 2674929 6476860 Smal_2377 Stenotrophomonas maltophilia R551-3 cyclase family protein YP_002028763.1 2673922 D 391008 CDS YP_002028764.1 194366154 6476861 2675226..2675840 1 NC_011071.1 KEGG: psa:PST_2344 cell division inhibitor SulA, putative; cell division inhibitor SulA 2675840 6476861 Smal_2378 Stenotrophomonas maltophilia R551-3 cell division inhibitor SulA YP_002028764.1 2675226 D 391008 CDS YP_002028765.1 194366155 6476862 2675850..2677259 1 NC_011071.1 KEGG: pmy:Pmen_1935 nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein; DNA repair nucleotidyltransferase/DNA polymerase-like protein 2677259 6476862 Smal_2379 Stenotrophomonas maltophilia R551-3 DNA repair nucleotidyltransferase/DNA polymerase-like protein YP_002028765.1 2675850 D 391008 CDS YP_002028766.1 194366156 6476863 2677266..2680376 1 NC_011071.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2680376 dnaE2 6476863 dnaE2 Stenotrophomonas maltophilia R551-3 error-prone DNA polymerase YP_002028766.1 2677266 D 391008 CDS YP_002028767.1 194366157 6476864 2680458..2680964 1 NC_011071.1 KEGG: ade:Adeh_0025 hypothetical protein; hypothetical protein 2680964 6476864 Smal_2381 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028767.1 2680458 D 391008 CDS YP_002028768.1 194366158 6476865 complement(2681067..2682353) 1 NC_011071.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB2872 GntR-family transcriptional regulator; GntR family transcriptional regulator 2682353 6476865 Smal_2382 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002028768.1 2681067 R 391008 CDS YP_002028769.1 194366159 6476866 2682430..2683203 1 NC_011071.1 PFAM: alanine racemase domain protein; KEGG: bbr:BB2871 hypothetical protein; alanine racemase domain-containing protein 2683203 6476866 Smal_2383 Stenotrophomonas maltophilia R551-3 alanine racemase domain-containing protein YP_002028769.1 2682430 D 391008 CDS YP_002028770.1 194366160 6476867 2683200..2683901 1 NC_011071.1 PFAM: glutamine amidotransferase class-I; KEGG: cvi:CV_3746 glutamine amidotransferase; glutamine amidotransferase 2683901 6476867 Smal_2384 Stenotrophomonas maltophilia R551-3 glutamine amidotransferase YP_002028770.1 2683200 D 391008 CDS YP_002028771.1 194366161 6476868 2683898..2684122 1 NC_011071.1 KEGG: stt:t0422 hypothetical protein; hypothetical protein 2684122 6476868 Smal_2385 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028771.1 2683898 D 391008 CDS YP_002028772.1 194366162 6476869 2684220..2684726 1 NC_011071.1 KEGG: pfl:PFL_3437 hypothetical protein; hypothetical protein 2684726 6476869 Smal_2386 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028772.1 2684220 D 391008 CDS YP_002028773.1 194366163 6476870 2684854..2685363 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_19990 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2685363 6476870 Smal_2387 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002028773.1 2684854 D 391008 CDS YP_002028774.1 194366164 6476871 2685360..2686286 1 NC_011071.1 PFAM: FecR protein; KEGG: nwi:Nwi_3044 FecR protein; anti-FecI sigma factor FecR 2686286 6476871 Smal_2388 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002028774.1 2685360 D 391008 CDS YP_002028775.1 194366165 6476872 2686351..2688822 1 NC_011071.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: sbc:SbBS512_A0115 TonB-dependent receptor; TonB-dependent receptor 2688822 6476872 Smal_2389 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028775.1 2686351 D 391008 CDS YP_002028776.1 194366166 6476873 2688809..2689609 1 NC_011071.1 PFAM: protein of unknown function DUF399; KEGG: cko:CKO_00039 hypothetical protein; hypothetical protein 2689609 6476873 Smal_2390 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028776.1 2688809 D 391008 CDS YP_002028777.1 194366167 6476874 2689602..2690315 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: pfo:PflO1_5557 TonB-like; TonB family protein 2690315 6476874 Smal_2391 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002028777.1 2689602 D 391008 CDS YP_002028778.1 194366168 6476875 complement(2690513..2691415) 1 NC_011071.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpp:lpp2043 hypothetical protein; cation diffusion facilitator family transporter 2691415 6476875 Smal_2392 Stenotrophomonas maltophilia R551-3 cation diffusion facilitator family transporter YP_002028778.1 2690513 R 391008 CDS YP_002028779.1 194366169 6476876 complement(2691444..2693732) 1 NC_011071.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: psa:PST_2250 probable Orn/Arg/Lys decarboxylase; lysine decarboxylase 2693732 6476876 Smal_2393 Stenotrophomonas maltophilia R551-3 lysine decarboxylase YP_002028779.1 2691444 R 391008 CDS YP_002028780.1 194366170 6476877 complement(2693753..2695105) 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: bvi:Bcep1808_5439 arginine:agmatin antiporter; arginine:agmatin antiporter 2695105 6476877 Smal_2394 Stenotrophomonas maltophilia R551-3 arginine:agmatin antiporter YP_002028780.1 2693753 R 391008 CDS YP_002028781.1 194366171 6476878 complement(2695182..2696615) 1 NC_011071.1 PFAM: porin; KEGG: sus:Acid_5803 hypothetical protein; porin 2696615 6476878 Smal_2395 Stenotrophomonas maltophilia R551-3 porin YP_002028781.1 2695182 R 391008 CDS YP_002028782.1 194366172 6476879 complement(2697129..2697971) 1 NC_011071.1 KEGG: bav:BAV2728 thiol:disulfide interchange protein; thiol:disulfide interchange protein 2697971 6476879 Smal_2396 Stenotrophomonas maltophilia R551-3 thiol:disulfide interchange protein YP_002028782.1 2697129 R 391008 CDS YP_002028783.1 194366173 6476880 complement(2698002..2698805) 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: psa:PST_3696 thiol-disulfide isomerase and thioredoxin; redoxin domain-containing protein 2698805 6476880 Smal_2397 Stenotrophomonas maltophilia R551-3 redoxin domain-containing protein YP_002028783.1 2698002 R 391008 CDS YP_002028784.1 194366174 6476881 complement(2698886..2699953) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfl:PFL_5538 transcriptional regulator, AraC family; cyclic nucleotide-binding protein 2699953 6476881 Smal_2398 Stenotrophomonas maltophilia R551-3 cyclic nucleotide-binding protein YP_002028784.1 2698886 R 391008 CDS YP_002028785.1 194366175 6476882 2700140..2700538 1 NC_011071.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: met:M446_0747 transcriptional regulator, MerR family; MerR family transcriptional regulator 2700538 6476882 Smal_2399 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002028785.1 2700140 D 391008 CDS YP_002028786.1 194366176 6476889 complement(2701615..2702031) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_0341 AttT protein; N-acetyltransferase GCN5 2702031 6476889 Smal_2400 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028786.1 2701615 R 391008 CDS YP_002028787.1 194366177 6476890 2702109..2703065 1 NC_011071.1 KEGG: bph:Bphy_7577 putative uncharacterized conserved protein; hypothetical protein 2703065 6476890 Smal_2401 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028787.1 2702109 D 391008 CDS YP_002028788.1 194366178 6476891 complement(2703076..2703456) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xac:XAC2055 two-component system regulatory protein; response regulator receiver and unknown domain-containing protein 2703456 6476891 Smal_2402 Stenotrophomonas maltophilia R551-3 response regulator receiver and unknown domain-containing protein YP_002028788.1 2703076 R 391008 CDS YP_002028789.1 194366179 6476893 2703746..2704288 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3593 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2704288 6476893 Smal_2403 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028789.1 2703746 D 391008 CDS YP_002028790.1 194366180 6476894 2704404..2705843 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_2634 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase 2705843 6476894 Smal_2404 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002028790.1 2704404 D 391008 CDS YP_002028791.1 194366181 6476895 complement(2705840..2707666) 1 NC_011071.1 KEGG: bra:BRADO1824 putative methyl-accepting chemotaxis protein (MCP) with multiple PAS domains; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 2707666 6476895 Smal_2405 Stenotrophomonas maltophilia R551-3 Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer YP_002028791.1 2705840 R 391008 CDS YP_002028792.1 194366182 6476896 complement(2707922..2708467) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_5716 acetyltransferase; N-acetyltransferase GCN5 2708467 6476896 Smal_2406 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028792.1 2707922 R 391008 CDS YP_002028793.1 194366183 6476897 2708622..2709710 1 NC_011071.1 KEGG: xcc:XCC2402 hypothetical protein; hypothetical protein 2709710 6476897 Smal_2407 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028793.1 2708622 D 391008 CDS YP_002028794.1 194366184 6476898 complement(2709757..2709987) 1 NC_011071.1 hypothetical protein 2709987 6476898 Smal_2408 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028794.1 2709757 R 391008 CDS YP_002028795.1 194366185 6476899 complement(2710050..2712239) 1 NC_011071.1 KEGG: xcv:XCV0667 putative sensor protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 2712239 6476899 Smal_2409 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor-containing diguanylate cyclase YP_002028795.1 2710050 R 391008 CDS YP_002028796.1 194366186 6476900 complement(2712447..2714834) 1 NC_011071.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: xcb:XC_1964 transcription-related protein; RNA binding S1 domain-containing protein 2714834 6476900 Smal_2410 Stenotrophomonas maltophilia R551-3 RNA binding S1 domain-containing protein YP_002028796.1 2712447 R 391008 CDS YP_002028797.1 194366187 6476901 complement(2715042..2715257) 1 NC_011071.1 KEGG: xcv:XCV2213 hypothetical protein; hypothetical protein 2715257 6476901 Smal_2411 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028797.1 2715042 R 391008 CDS YP_002028798.1 194366188 6476902 complement(2716029..2716481) 1 NC_011071.1 KEGG: xcb:XC_1961 hypothetical protein; hypothetical protein 2716481 6476902 Smal_2412 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028798.1 2716029 R 391008 CDS YP_002028799.1 194366189 6476903 complement(2716478..2716681) 1 NC_011071.1 PFAM: PspC domain protein; KEGG: xom:XOO_2087 hypothetical protein; phage shock protein C, PspC 2716681 6476903 Smal_2413 Stenotrophomonas maltophilia R551-3 phage shock protein C, PspC YP_002028799.1 2716478 R 391008 CDS YP_002028800.1 194366190 6476904 complement(2716746..2717099) 1 NC_011071.1 KEGG: xcb:XC_0338 hypothetical protein; hypothetical protein 2717099 6476904 Smal_2414 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028800.1 2716746 R 391008 CDS YP_002028801.1 194366191 6476905 complement(2717176..2718243) 1 NC_011071.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1959 poly (3-hydroxybutyric acid) synthase; poly(R)-hydroxyalkanoic acid synthase subunit PhaC 2718243 6476905 Smal_2415 Stenotrophomonas maltophilia R551-3 poly(R)-hydroxyalkanoic acid synthase subunit PhaC YP_002028801.1 2717176 R 391008 CDS YP_002028802.1 194366192 6476906 complement(2718240..2719304) 1 NC_011071.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; PFAM: Poly(R)-hydroxyalkanoic acid synthase class III PhaE subunit; KEGG: xcb:XC_1958 PHA synthase subunit; poly(R)-hydroxyalkanoic acid synthase subunit PhaE 2719304 6476906 Smal_2416 Stenotrophomonas maltophilia R551-3 poly(R)-hydroxyalkanoic acid synthase subunit PhaE YP_002028802.1 2718240 R 391008 CDS YP_002028803.1 194366193 6476907 complement(2719327..2719941) 1 NC_011071.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xcv:XCV2207 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 2719941 6476907 Smal_2417 Stenotrophomonas maltophilia R551-3 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_002028803.1 2719327 R 391008 CDS YP_002028804.1 194366194 6476908 2720286..2720936 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ilo:IL0784 SAM-dependent methyltransferase; type 11 methyltransferase 2720936 6476908 Smal_2418 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002028804.1 2720286 D 391008 CDS YP_002028805.1 194366195 6476909 complement(2721012..2721500) 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: xac:XAC2044 7,8-dihydro-8-oxoguanine-triphosphatase; NUDIX hydrolase 2721500 6476909 Smal_2419 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002028805.1 2721012 R 391008 CDS YP_002028806.1 194366196 6476910 complement(2721541..2722050) 1 NC_011071.1 PFAM: protein of unknown function DUF1249; KEGG: xcb:XC_1954 hypothetical protein; hypothetical protein 2722050 6476910 Smal_2420 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028806.1 2721541 R 391008 CDS YP_002028807.1 194366197 6476911 complement(2722220..2723041) 1 NC_011071.1 PFAM: protein of unknown function DUF299; KEGG: xom:XOO_2080 hypothetical protein; hypothetical protein 2723041 6476911 Smal_2421 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028807.1 2722220 R 391008 CDS YP_002028808.1 194366198 6476912 2723186..2725564 1 NC_011071.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2725564 6476912 Smal_2422 Stenotrophomonas maltophilia R551-3 phosphoenolpyruvate synthase YP_002028808.1 2723186 D 391008 CDS YP_002028809.1 194366199 6476913 2725701..2726594 1 NC_011071.1 PFAM: MscS Mechanosensitive ion channel; KEGG: xac:XAC2040 small conductance mechanosensitive ion channel; mechanosensitive ion channel MscS 2726594 6476913 Smal_2423 Stenotrophomonas maltophilia R551-3 mechanosensitive ion channel MscS YP_002028809.1 2725701 D 391008 CDS YP_002028810.1 194366200 6476914 complement(2726682..2727797) 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pap:PSPA7_4051 probable oxidoreductase; NADH:flavin oxidoreductase 2727797 6476914 Smal_2424 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002028810.1 2726682 R 391008 CDS YP_002028811.1 194366201 6476915 complement(2727990..2728862) 1 NC_011071.1 KEGG: pfl:PFL_2383 LasA; LasA protein 2728862 6476915 Smal_2425 Stenotrophomonas maltophilia R551-3 LasA protein YP_002028811.1 2727990 R 391008 CDS YP_002028812.1 194366202 6476916 complement(2729022..2729594) 1 NC_011071.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 2729594 6476916 Smal_2426 Stenotrophomonas maltophilia R551-3 oligoribonuclease YP_002028812.1 2729022 R 391008 CDS YP_002028813.1 194366203 6476917 complement(2729669..2730193) 1 NC_011071.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcv:XCV2199 putative cytidine / deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase 2730193 6476917 Smal_2427 Stenotrophomonas maltophilia R551-3 zinc-binding CMP/dCMP deaminase YP_002028813.1 2729669 R 391008 CDS YP_002028814.1 194366204 6476918 complement(2730269..2730628) 1 NC_011071.1 PFAM: helix-turn-helix HxlR type; KEGG: azc:AZC_0421 putative transcriptional regulator; HxlR family transcriptional regulator 2730628 6476918 Smal_2428 Stenotrophomonas maltophilia R551-3 HxlR family transcriptional regulator YP_002028814.1 2730269 R 391008 CDS YP_002028815.1 194366205 6476919 2730706..2731473 1 NC_011071.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: csa:Csal_0147 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2731473 6476919 Smal_2429 Stenotrophomonas maltophilia R551-3 NAD(P)H dehydrogenase (quinone) YP_002028815.1 2730706 D 391008 CDS YP_002028816.1 194366206 6476920 2731542..2731979 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_4376 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2731979 6476920 Smal_2430 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028816.1 2731542 D 391008 CDS YP_002028817.1 194366207 6476921 2732038..2732244 1 NC_011071.1 hypothetical protein 2732244 6476921 Smal_2431 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028817.1 2732038 D 391008 CDS YP_002028818.1 194366208 6476922 complement(2732263..2732769) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3291 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2732769 6476922 Smal_2432 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028818.1 2732263 R 391008 CDS YP_002028819.1 194366209 6476923 2733048..2733398 1 NC_011071.1 hypothetical protein 2733398 6476923 Smal_2433 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028819.1 2733048 D 391008 CDS YP_002028820.1 194366210 6476924 2733438..2734091 1 NC_011071.1 KEGG: xcb:XC_0585 hypothetical protein; hypothetical protein 2734091 6476924 Smal_2434 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028820.1 2733438 D 391008 CDS YP_002028821.1 194366211 6476925 2734088..2735416 1 NC_011071.1 KEGG: xcv:XCV0608 putative lipase; putative lipase 2735416 6476925 Smal_2435 Stenotrophomonas maltophilia R551-3 putative lipase YP_002028821.1 2734088 D 391008 CDS YP_002028822.1 194366212 6476926 complement(2735471..2736745) 1 NC_011071.1 KEGG: xac:XAC1162 hypothetical protein; hypothetical protein 2736745 6476926 Smal_2436 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028822.1 2735471 R 391008 CDS YP_002028823.1 194366213 6476927 complement(2736843..2737850) 1 NC_011071.1 KEGG: xac:XAC0466 lytic enzyme; chitinase-like protein 2737850 6476927 Smal_2437 Stenotrophomonas maltophilia R551-3 chitinase-like protein YP_002028823.1 2736843 R 391008 CDS YP_002028824.1 194366214 6476928 complement(2737908..2738444) 1 NC_011071.1 KEGG: xac:XAC0467 hypothetical protein; hypothetical protein 2738444 6476928 Smal_2438 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028824.1 2737908 R 391008 CDS YP_002028825.1 194366215 6476929 complement(2743048..2744208) 1 NC_011071.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xcb:XC_2016 VirB6 protein; TrbL/VirB6 plasmid conjugal transfer protein 2744208 6476929 Smal_2439 Stenotrophomonas maltophilia R551-3 TrbL/VirB6 plasmid conjugal transfer protein YP_002028825.1 2743048 R 391008 CDS YP_002028826.1 194366216 6476930 complement(2744255..2745106) 1 NC_011071.1 KEGG: xcv:XCV3391 hypothetical protein; hypothetical protein 2745106 6476930 Smal_2440 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028826.1 2744255 R 391008 CDS YP_002028827.1 194366217 6476931 complement(2745103..2747550) 1 NC_011071.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: xac:XAC2614 VirB4 protein; type IV secretion/conjugal transfer ATPase 2747550 6476931 Smal_2441 Stenotrophomonas maltophilia R551-3 type IV secretion/conjugal transfer ATPase YP_002028827.1 2745103 R 391008 CDS YP_002028828.1 194366218 6476932 complement(2747632..2747940) 1 NC_011071.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: xcb:XC_1638 VirB3 protein; type IV secretory pathway VirB3 family protein 2747940 6476932 Smal_2442 Stenotrophomonas maltophilia R551-3 type IV secretory pathway VirB3 family protein YP_002028828.1 2747632 R 391008 CDS YP_002028829.1 194366219 6476933 complement(2747933..2748343) 1 NC_011071.1 PFAM: Conjugal transfer protein TrbC; KEGG: xcb:XC_1637 VirB2 protein; conjugal transfer protein Trbc 2748343 6476933 Smal_2443 Stenotrophomonas maltophilia R551-3 conjugal transfer protein Trbc YP_002028829.1 2747933 R 391008 CDS YP_002028830.1 194366220 6476934 complement(2748417..2749400) 1 NC_011071.1 PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC2617 VirB1 protein; Lytic transglycosylase 2749400 6476934 Smal_2444 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002028830.1 2748417 R 391008 CDS YP_002028831.1 194366221 6476935 complement(2749404..2750447) 1 NC_011071.1 TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: xcb:XC_1635 VirB11 protein; P-type DNA transfer ATPase VirB11 2750447 6476935 Smal_2445 Stenotrophomonas maltophilia R551-3 P-type DNA transfer ATPase VirB11 YP_002028831.1 2749404 R 391008 CDS YP_002028832.1 194366222 6476936 complement(2750462..2751715) 1 NC_011071.1 PFAM: conjugation TrbI family protein; KEGG: xcb:XC_1634 VirB10 protein; conjugation TrbI family protein 2751715 6476936 Smal_2446 Stenotrophomonas maltophilia R551-3 conjugation TrbI family protein YP_002028832.1 2750462 R 391008 CDS YP_002028833.1 194366223 6476937 complement(2751712..2752491) 1 NC_011071.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: xac:XAC2620 VirB9 protein; conjugal transfer protein TrbG 2752491 6476937 Smal_2447 Stenotrophomonas maltophilia R551-3 conjugal transfer protein TrbG YP_002028833.1 2751712 R 391008 CDS YP_002028834.1 194366224 6476938 complement(2752488..2753543) 1 NC_011071.1 PFAM: VirB8 family protein; KEGG: xac:XAC2621 VirB8 protein; VirB8 family protein 2753543 6476938 Smal_2448 Stenotrophomonas maltophilia R551-3 VirB8 family protein YP_002028834.1 2752488 R 391008 CDS YP_002028835.1 194366225 6476939 complement(2753633..2754079) 1 NC_011071.1 KEGG: xac:XAC2622 hypothetical protein; hypothetical protein 2754079 6476939 Smal_2449 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028835.1 2753633 R 391008 CDS YP_002028836.1 194366226 6476940 complement(2754076..2754303) 1 NC_011071.1 hypothetical protein 2754303 6476940 Smal_2450 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028836.1 2754076 R 391008 CDS YP_002028837.1 194366227 6476941 complement(2754506..2756185) 1 NC_011071.1 PFAM: TRAG family protein; KEGG: xcv:XCV2810 type IV secretion system protein VirD4; TRAG family protein 2756185 6476941 Smal_2451 Stenotrophomonas maltophilia R551-3 TRAG family protein YP_002028837.1 2754506 R 391008 CDS YP_002028838.1 194366228 6476942 complement(2756222..2756479) 1 NC_011071.1 KEGG: xcb:XC_1629 hypothetical protein; hypothetical protein 2756479 6476942 Smal_2452 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028838.1 2756222 R 391008 CDS YP_002028839.1 194366229 6476943 2756682..2757926 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV1418 putative arabinose efflux porter; major facilitator superfamily protein 2757926 6476943 Smal_2453 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028839.1 2756682 D 391008 CDS YP_002028840.1 194366230 6476944 complement(2757943..2758422) 1 NC_011071.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pmy:Pmen_3219 transcriptional regulator, MerR family; MerR family transcriptional regulator 2758422 6476944 Smal_2454 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002028840.1 2757943 R 391008 CDS YP_002028841.1 194366231 6476945 2758512..2759750 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bmc:BAbS19_II02080 NADH oxidase; NADH:flavin oxidoreductase 2759750 6476945 Smal_2455 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002028841.1 2758512 D 391008 CDS YP_002028842.1 194366232 6476946 2759844..2760320 1 NC_011071.1 hypothetical protein 2760320 6476946 Smal_2456 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028842.1 2759844 D 391008 CDS YP_002028843.1 194366233 6476947 2760371..2760694 1 NC_011071.1 hypothetical protein 2760694 6476947 Smal_2457 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028843.1 2760371 D 391008 CDS YP_002028844.1 194366234 6476948 2760821..2761066 1 NC_011071.1 hypothetical protein 2761066 6476948 Smal_2458 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028844.1 2760821 D 391008 CDS YP_002028845.1 194366235 6476949 complement(2761112..2762641) 1 NC_011071.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B2639 putative oxygenase; monooxygenase FAD-binding 2762641 6476949 Smal_2459 Stenotrophomonas maltophilia R551-3 monooxygenase FAD-binding YP_002028845.1 2761112 R 391008 CDS YP_002028846.1 194366236 6476950 2762724..2763368 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: mrd:Mrad2831_4515 transcriptional regulator, TetR family; TetR family transcriptional regulator 2763368 6476950 Smal_2460 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028846.1 2762724 D 391008 CDS YP_002028847.1 194366237 6476951 2763442..2765583 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 2765583 6476951 Smal_2461 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002028847.1 2763442 D 391008 CDS YP_002028848.1 194366238 6476952 complement(2765640..2765921) 1 NC_011071.1 KEGG: mmr:Mmar10_0666 hypothetical protein; hypothetical protein 2765921 6476952 Smal_2462 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028848.1 2765640 R 391008 CDS YP_002028849.1 194366239 6476953 2766131..2766805 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator; winged helix family two component transcriptional regulator 2766805 6476953 Smal_2463 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002028849.1 2766131 D 391008 CDS YP_002028850.1 194366240 6476954 2766805..2768154 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: atc:AGR_L_2107 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2768154 6476954 Smal_2464 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002028850.1 2766805 D 391008 CDS YP_002028851.1 194366241 6476955 2768229..2768894 1 NC_011071.1 KEGG: bpm:BURPS1710b_2133 ABC transporter, permease protein; hypothetical protein 2768894 6476955 Smal_2465 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028851.1 2768229 D 391008 CDS YP_002028852.1 194366242 6476956 2769030..2770220 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO5685 putative accessory protein to ABC-type macrolide transport protein MacB; RND family efflux transporter MFP subunit 2770220 6476956 Smal_2466 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028852.1 2769030 D 391008 CDS YP_002028853.1 194366243 6476957 2770229..2772181 1 NC_011071.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: bav:BAV2813 macrolide-specific ABC-type efflux carrier; ABC transporter-like protein 2772181 6476957 Smal_2467 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002028853.1 2770229 D 391008 CDS YP_002028854.1 194366244 6476958 2772272..2772667 1 NC_011071.1 KEGG: ret:RHE_CH02573 hypothetical protein; hypothetical protein 2772667 6476958 Smal_2468 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028854.1 2772272 D 391008 CDS YP_002028855.1 194366245 6476959 2772694..2773071 1 NC_011071.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: reu:Reut_A3217 calcium-binding EF-hand; putative signal transduction protein 2773071 6476959 Smal_2469 Stenotrophomonas maltophilia R551-3 putative signal transduction protein YP_002028855.1 2772694 D 391008 CDS YP_002028856.1 194366246 6476960 2773187..2773384 1 NC_011071.1 hypothetical protein 2773384 6476960 Smal_2470 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028856.1 2773187 D 391008 CDS YP_002028857.1 194366247 6476962 complement(2774849..2775712) 1 NC_011071.1 KEGG: xcb:XC_4270 hypothetical protein; hypothetical protein 2775712 6476962 Smal_2473 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028857.1 2774849 R 391008 CDS YP_002028858.1 194366248 6476963 complement(2775910..2776257) 1 NC_011071.1 PFAM: helix-turn-helix HxlR type; KEGG: bmn:BMA10247_1870 transcriptional regulator family protein; HxlR family transcriptional regulator 2776257 6476963 Smal_2474 Stenotrophomonas maltophilia R551-3 HxlR family transcriptional regulator YP_002028858.1 2775910 R 391008 CDS YP_002028859.1 194366249 6476964 2776360..2777349 1 NC_011071.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_0105 alcohol dehydrogenase, zinc-binding; YhdH/YhfP family quinone oxidoreductase 2777349 6476964 Smal_2475 Stenotrophomonas maltophilia R551-3 YhdH/YhfP family quinone oxidoreductase YP_002028859.1 2776360 D 391008 CDS YP_002028860.1 194366250 6476965 2777406..2777798 1 NC_011071.1 hypothetical protein 2777798 6476965 Smal_2476 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028860.1 2777406 D 391008 CDS YP_002028861.1 194366251 6476966 complement(2777868..2778092) 1 NC_011071.1 hypothetical protein 2778092 6476966 Smal_2477 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028861.1 2777868 R 391008 CDS YP_002028862.1 194366252 6476967 2778256..2781009 1 NC_011071.1 PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: pna:Pnap_4961 UvrD/REP helicase; UvrD/REP helicase 2781009 6476967 Smal_2478 Stenotrophomonas maltophilia R551-3 UvrD/REP helicase YP_002028862.1 2778256 D 391008 CDS YP_002028863.1 194366253 6476968 complement(2781264..2782517) 1 NC_011071.1 KEGG: aav:Aave_0511 hypothetical protein; hypothetical protein 2782517 6476968 Smal_2479 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028863.1 2781264 R 391008 CDS YP_002028864.1 194366254 6476969 2783039..2784232 1 NC_011071.1 PFAM: integrase family protein; KEGG: bxe:Bxe_C0409 putative phage integrase; integrase family protein 2784232 6476969 Smal_2480 Stenotrophomonas maltophilia R551-3 integrase family protein YP_002028864.1 2783039 D 391008 CDS YP_002028865.1 194366255 6476970 complement(2784229..2784870) 1 NC_011071.1 KEGG: sbm:Shew185_2095 hypothetical protein; hypothetical protein 2784870 6476970 Smal_2481 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028865.1 2784229 R 391008 CDS YP_002028866.1 194366256 6476971 complement(2785288..2786325) 1 NC_011071.1 KEGG: rde:RD1_4058 hypothetical protein; hypothetical protein 2786325 6476971 Smal_2482 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028866.1 2785288 R 391008 CDS YP_002028867.1 194366257 6476972 complement(2786719..2787309) 1 NC_011071.1 hypothetical protein 2787309 6476972 Smal_2483 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028867.1 2786719 R 391008 CDS YP_002028868.1 194366258 6476973 complement(2788120..2788734) 1 NC_011071.1 hypothetical protein 2788734 6476973 Smal_2484 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028868.1 2788120 R 391008 CDS YP_002028869.1 194366259 6476974 2789221..2790096 1 NC_011071.1 KEGG: ecc:c5321 hypothetical protein; hypothetical protein 2790096 6476974 Smal_2485 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028869.1 2789221 D 391008 CDS YP_002028870.1 194366260 6476975 complement(2790739..2791407) 1 NC_011071.1 hypothetical protein 2791407 6476975 Smal_2486 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028870.1 2790739 R 391008 CDS YP_002028871.1 194366261 6476976 complement(2791407..2791703) 1 NC_011071.1 hypothetical protein 2791703 6476976 Smal_2487 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028871.1 2791407 R 391008 CDS YP_002028872.1 194366262 6476977 complement(2791755..2795117) 1 NC_011071.1 PFAM: Carbohydrate-binding CenC domain protein; KEGG: ppg:PputGB1_3392 protein of unknown function DUF1983; carbohydrate-binding CenC domain-containing protein 2795117 6476977 Smal_2488 Stenotrophomonas maltophilia R551-3 carbohydrate-binding CenC domain-containing protein YP_002028872.1 2791755 R 391008 CDS YP_002028873.1 194366263 6476978 complement(2795124..2799707) 1 NC_011071.1 TIGRFAM: phage tape measure protein; KEGG: pst:PSPTO_4046 tail tape meausure protein; phage tape measure protein 2799707 6476978 Smal_2489 Stenotrophomonas maltophilia R551-3 phage tape measure protein YP_002028873.1 2795124 R 391008 CDS YP_002028874.1 194366264 6476979 complement(2800126..2800869) 1 NC_011071.1 hypothetical protein 2800869 6476979 Smal_2490 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028874.1 2800126 R 391008 CDS YP_002028875.1 194366265 6476980 complement(2800892..2802859) 1 NC_011071.1 KEGG: rci:RRC34 hypothetical protein; hypothetical protein 2802859 6476980 Smal_2491 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028875.1 2800892 R 391008 CDS YP_002028876.1 194366266 6476981 complement(2802862..2803077) 1 NC_011071.1 hypothetical protein 2803077 6476981 Smal_2492 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028876.1 2802862 R 391008 CDS YP_002028877.1 194366267 6476982 complement(2803155..2803529) 1 NC_011071.1 hypothetical protein 2803529 6476982 Smal_2493 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028877.1 2803155 R 391008 CDS YP_002028878.1 194366268 6476983 complement(2803651..2804124) 1 NC_011071.1 KEGG: shw:Sputw3181_2473 prophage LambdaSo, major tail protein V, putative; hypothetical protein 2804124 6476983 Smal_2494 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028878.1 2803651 R 391008 CDS YP_002028879.1 194366269 6476984 complement(2804203..2804565) 1 NC_011071.1 KEGG: shw:Sputw3181_2474 hypothetical protein; hypothetical protein 2804565 6476984 Smal_2495 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028879.1 2804203 R 391008 CDS YP_002028880.1 194366270 6476985 complement(2804562..2805065) 1 NC_011071.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: acb:A1S_1593 hypothetical protein; phage protein, HK97 gp10 family 2805065 6476985 Smal_2496 Stenotrophomonas maltophilia R551-3 phage protein, HK97 gp10 family YP_002028880.1 2804562 R 391008 CDS YP_002028881.1 194366271 6476986 complement(2805058..2805393) 1 NC_011071.1 TIGRFAM: phage head-tail adaptor; KEGG: abm:ABSDF1034 putative head-tail adaptor; phage head-tail adaptor 2805393 6476986 Smal_2497 Stenotrophomonas maltophilia R551-3 phage head-tail adaptor YP_002028881.1 2805058 R 391008 CDS YP_002028882.1 194366272 6476987 complement(2805390..2805869) 1 NC_011071.1 KEGG: dac:Daci_1636 hypothetical protein; hypothetical protein 2805869 6476987 Smal_2498 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028882.1 2805390 R 391008 CDS YP_002028883.1 194366273 6476988 complement(2805871..2806341) 1 NC_011071.1 KEGG: bmu:Bmul_3868 hypothetical protein; hypothetical protein 2806341 6476988 Smal_2499 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028883.1 2805871 R 391008 CDS YP_002028884.1 194366274 6476989 complement(2806403..2807653) 1 NC_011071.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bmu:Bmul_3867 phage major capsid protein, HK97 family; phage major capsid protein, HK97 family 2807653 6476989 Smal_2500 Stenotrophomonas maltophilia R551-3 phage major capsid protein, HK97 family YP_002028884.1 2806403 R 391008 CDS YP_002028885.1 194366275 6476990 complement(2807665..2808507) 1 NC_011071.1 PFAM: peptidase S14 ClpP; KEGG: bmu:Bmul_3866 peptidase S14 ClpP; peptidase S14 ClpP 2808507 6476990 Smal_2501 Stenotrophomonas maltophilia R551-3 peptidase S14 ClpP YP_002028885.1 2807665 R 391008 CDS YP_002028886.1 194366276 6476991 complement(2808485..2809747) 1 NC_011071.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bmu:Bmul_3865 phage portal protein, HK97 family; phage portal protein, HK97 family 2809747 6476991 Smal_2502 Stenotrophomonas maltophilia R551-3 phage portal protein, HK97 family YP_002028886.1 2808485 R 391008 CDS YP_002028887.1 194366277 6476992 complement(2809756..2811564) 1 NC_011071.1 PFAM: Terminase; KEGG: rsh:Rsph17029_0645 phage terminase; terminase 2811564 6476992 Smal_2503 Stenotrophomonas maltophilia R551-3 terminase YP_002028887.1 2809756 R 391008 CDS YP_002028888.1 194366278 6476993 complement(2811593..2811844) 1 NC_011071.1 KEGG: bja:bll8251 hypothetical protein; hypothetical protein 2811844 6476993 Smal_2504 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028888.1 2811593 R 391008 CDS YP_002028889.1 194366279 6476994 complement(2812122..2812445) 1 NC_011071.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mem:Memar_0383 HNH endonuclease; HNH endonuclease 2812445 6476994 Smal_2505 Stenotrophomonas maltophilia R551-3 HNH endonuclease YP_002028889.1 2812122 R 391008 CDS YP_002028890.1 194366280 6476995 complement(2812445..2812735) 1 NC_011071.1 hypothetical protein 2812735 6476995 Smal_2506 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028890.1 2812445 R 391008 CDS YP_002028891.1 194366281 6476996 complement(2812898..2813257) 1 NC_011071.1 KEGG: bmu:Bmul_3855 hypothetical protein; hypothetical protein 2813257 6476996 Smal_2507 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028891.1 2812898 R 391008 CDS YP_002028892.1 194366282 6476997 complement(2813363..2813959) 1 NC_011071.1 KEGG: xac:XAC2244 hypothetical protein; hypothetical protein 2813959 6476997 Smal_2508 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028892.1 2813363 R 391008 CDS YP_002028893.1 194366283 6476998 complement(2814130..2814366) 1 NC_011071.1 KEGG: cau:Caur_2913 hypothetical protein; hypothetical protein 2814366 6476998 Smal_2509 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028893.1 2814130 R 391008 CDS YP_002028894.1 194366284 6476999 complement(2814571..2814885) 1 NC_011071.1 hypothetical protein 2814885 6476999 Smal_2510 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028894.1 2814571 R 391008 CDS YP_002028895.1 194366285 6477000 complement(2814882..2815370) 1 NC_011071.1 PFAM: glycoside hydrolase family 24; KEGG: ecx:EcHS_A0304 phage lysozyme; lysozyme 2815370 6477000 Smal_2511 Stenotrophomonas maltophilia R551-3 lysozyme YP_002028895.1 2814882 R 391008 CDS YP_002028896.1 194366286 6477001 complement(2815467..2816171) 1 NC_011071.1 KEGG: xfm:Xfasm12_1313 hypothetical protein; hypothetical protein 2816171 6477001 Smal_2512 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028896.1 2815467 R 391008 CDS YP_002028897.1 194366287 6477002 complement(2816242..2816445) 1 NC_011071.1 hypothetical protein 2816445 6477002 Smal_2513 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028897.1 2816242 R 391008 CDS YP_002028898.1 194366288 6477003 complement(2816442..2816810) 1 NC_011071.1 hypothetical protein 2816810 6477003 Smal_2514 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028898.1 2816442 R 391008 CDS YP_002028899.1 194366289 6477004 complement(2817000..2817713) 1 NC_011071.1 KEGG: xfm:Xfasm12_1334 hypothetical protein; hypothetical protein 2817713 6477004 Smal_2515 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028899.1 2817000 R 391008 CDS YP_002028900.1 194366290 6477006 complement(2818999..2819310) 1 NC_011071.1 hypothetical protein 2819310 6477006 Smal_2517 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028900.1 2818999 R 391008 CDS YP_002028901.1 194366291 6477007 complement(2819307..2819837) 1 NC_011071.1 KEGG: bbr:BB1679 hypothetical protein; hypothetical protein 2819837 6477007 Smal_2518 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028901.1 2819307 R 391008 CDS YP_002028902.1 194366292 6477008 complement(2819947..2820378) 1 NC_011071.1 PFAM: CI repressor; KEGG: bja:bll5480 putative chaperone; CI repressor 2820378 6477008 Smal_2519 Stenotrophomonas maltophilia R551-3 CI repressor YP_002028902.1 2819947 R 391008 CDS YP_002028903.1 194366293 6477009 2820899..2821240 1 NC_011071.1 hypothetical protein 2821240 6477009 Smal_2520 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028903.1 2820899 D 391008 CDS YP_002028904.1 194366294 6477010 2821392..2821583 1 NC_011071.1 hypothetical protein 2821583 6477010 Smal_2521 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028904.1 2821392 D 391008 CDS YP_002028905.1 194366295 6477011 2821580..2821795 1 NC_011071.1 hypothetical protein 2821795 6477011 Smal_2522 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028905.1 2821580 D 391008 CDS YP_002028906.1 194366296 6477012 2821792..2822091 1 NC_011071.1 hypothetical protein 2822091 6477012 Smal_2523 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028906.1 2821792 D 391008 CDS YP_002028907.1 194366297 6477013 2822091..2822333 1 NC_011071.1 hypothetical protein 2822333 6477013 Smal_2524 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028907.1 2822091 D 391008 CDS YP_002028908.1 194366298 6477014 2822421..2822804 1 NC_011071.1 hypothetical protein 2822804 6477014 Smal_2525 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028908.1 2822421 D 391008 CDS YP_002028909.1 194366299 6477015 2822808..2823059 1 NC_011071.1 hypothetical protein 2823059 6477015 Smal_2526 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028909.1 2822808 D 391008 CDS YP_002028910.1 194366300 6477016 2823059..2823610 1 NC_011071.1 KEGG: pap:PSPA7_2371 hypothetical protein; hypothetical protein 2823610 6477016 Smal_2527 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028910.1 2823059 D 391008 CDS YP_002028911.1 194366301 6477017 2823603..2824454 1 NC_011071.1 hypothetical protein 2824454 6477017 Smal_2528 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028911.1 2823603 D 391008 CDS YP_002028912.1 194366302 6477018 2824753..2825067 1 NC_011071.1 KEGG: xom:XOO_1573 hypothetical protein; hypothetical protein 2825067 6477018 Smal_2529 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028912.1 2824753 D 391008 CDS YP_002028913.1 194366303 6477019 2825054..2825269 1 NC_011071.1 PFAM: Prophage CP4-57 regulatory; KEGG: ecp:ECP_2020 putative regulatory protein; phage transcriptional regulator AlpA 2825269 6477019 Smal_2530 Stenotrophomonas maltophilia R551-3 phage transcriptional regulator AlpA YP_002028913.1 2825054 D 391008 CDS YP_002028914.1 194366304 6477021 2825548..2826618 1 NC_011071.1 KEGG: ret:RHE_CH03886 hypothetical protein; hypothetical protein 2826618 6477021 Smal_2531 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028914.1 2825548 D 391008 CDS YP_002028915.1 194366305 6477022 complement(2826700..2827692) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_2639 transcriptional regulator; LysR family transcriptional regulator 2827692 6477022 Smal_2532 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028915.1 2826700 R 391008 CDS YP_002028916.1 194366306 6477023 2827820..2828407 1 NC_011071.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: xac:XAC1654 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase (quinone) 2828407 6477023 Smal_2533 Stenotrophomonas maltophilia R551-3 NAD(P)H dehydrogenase (quinone) YP_002028916.1 2827820 D 391008 CDS YP_002028917.1 194366307 6477024 2828639..2828995 1 NC_011071.1 PFAM: Variant SH3 domain protein; KEGG: pen:PSEEN2253 hypothetical protein; Variant SH3 domain-containing protein 2828995 6477024 Smal_2534 Stenotrophomonas maltophilia R551-3 Variant SH3 domain-containing protein YP_002028917.1 2828639 D 391008 CDS YP_002028918.1 194366308 6477025 complement(2829038..2830318) 1 NC_011071.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2830318 6477025 Smal_2535 Stenotrophomonas maltophilia R551-3 seryl-tRNA synthetase YP_002028918.1 2829038 R 391008 CDS YP_002028919.1 194366309 6477026 2830432..2831070 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC1652 hypothetical protein; TonB family protein 2831070 6477026 Smal_2536 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002028919.1 2830432 D 391008 CDS YP_002028920.1 194366310 6477027 2831190..2831762 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC1651 TonB-like protein; TonB family protein 2831762 6477027 Smal_2537 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002028920.1 2831190 D 391008 CDS YP_002028921.1 194366311 6477028 complement(2832055..2833362) 1 NC_011071.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2833362 6477028 Smal_2538 Stenotrophomonas maltophilia R551-3 3-phosphoshikimate 1-carboxyvinyltransferase YP_002028921.1 2832055 R 391008 CDS YP_002028922.1 194366312 6477029 complement(2833439..2834638) 1 NC_011071.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: xcb:XC_2644 P-protein; chorismate mutase 2834638 6477029 Smal_2539 Stenotrophomonas maltophilia R551-3 chorismate mutase YP_002028922.1 2833439 R 391008 CDS YP_002028923.1 194366313 6477030 complement(2834690..2835775) 1 NC_011071.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2835775 6477030 Smal_2540 Stenotrophomonas maltophilia R551-3 phosphoserine aminotransferase YP_002028923.1 2834690 R 391008 CDS YP_002028924.1 194366314 6477031 complement(2835956..2836762) 1 NC_011071.1 PFAM: Forkhead-associated protein; KEGG: xcb:XC_2648 hypothetical protein; FHA domain-containing protein 2836762 6477031 Smal_2541 Stenotrophomonas maltophilia R551-3 FHA domain-containing protein YP_002028924.1 2835956 R 391008 CDS YP_002028925.1 194366315 6477032 2836888..2837163 1 NC_011071.1 TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: xom:XOO_2272 hypothetical protein; polyhydroxyalkanoic acid system protein 2837163 6477032 Smal_2542 Stenotrophomonas maltophilia R551-3 polyhydroxyalkanoic acid system protein YP_002028925.1 2836888 D 391008 CDS YP_002028926.1 194366316 6477033 2837244..2837735 1 NC_011071.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: xom:XOO_2273 poly(hydroxyalcanoate) granule associated protein; poly(hydroxyalkanoate) granule-associated protein 2837735 6477033 Smal_2543 Stenotrophomonas maltophilia R551-3 poly(hydroxyalkanoate) granule-associated protein YP_002028926.1 2837244 D 391008 CDS YP_002028927.1 194366317 6477034 2837972..2838982 1 NC_011071.1 KEGG: xcc:XCC1583 hypothetical protein; hypothetical protein 2838982 6477034 Smal_2544 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028927.1 2837972 D 391008 CDS YP_002028928.1 194366318 6477035 complement(2839103..2839495) 1 NC_011071.1 PFAM: protein of unknown function UPF0150; KEGG: pna:Pnap_2645 protein of unknown function UPF0150; hypothetical protein 2839495 6477035 Smal_2545 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028928.1 2839103 R 391008 CDS YP_002028929.1 194366319 6477036 complement(2839504..2839686) 1 NC_011071.1 PFAM: YcfA family protein; KEGG: gdi:GDI3800 hypothetical protein; hypothetical protein 2839686 6477036 Smal_2546 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028929.1 2839504 R 391008 CDS YP_002028930.1 194366320 6477037 complement(2839760..2840488) 1 NC_011071.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: xcv:XCV1682 transcriptional regulator, GntR family; transcriptional regulator, histidine utilization repressor, GntR family 2840488 6477037 Smal_2547 Stenotrophomonas maltophilia R551-3 transcriptional regulator, histidine utilization repressor, GntR family YP_002028930.1 2839760 R 391008 CDS YP_002028931.1 194366321 6477038 complement(2840517..2841887) 1 NC_011071.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 2841887 6477038 Smal_2548 Stenotrophomonas maltophilia R551-3 N-formimino-L-glutamate deiminase YP_002028931.1 2840517 R 391008 CDS YP_002028932.1 194366322 6477039 2841955..2843178 1 NC_011071.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2843178 6477039 Smal_2549 Stenotrophomonas maltophilia R551-3 imidazolonepropionase YP_002028932.1 2841955 D 391008 CDS YP_002028933.1 194366323 6477040 2843175..2844716 1 NC_011071.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2844716 6477040 Smal_2550 Stenotrophomonas maltophilia R551-3 histidine ammonia-lyase YP_002028933.1 2843175 D 391008 CDS YP_002028934.1 194366324 6477041 2844713..2845567 1 NC_011071.1 PFAM: N-formylglutamate amidohydrolase; KEGG: xcv:XCV1677 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 2845567 6477041 Smal_2551 Stenotrophomonas maltophilia R551-3 N-formylglutamate amidohydrolase YP_002028934.1 2844713 D 391008 CDS YP_002028935.1 194366325 6477042 2845564..2847231 1 NC_011071.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2847231 6477042 Smal_2552 Stenotrophomonas maltophilia R551-3 urocanate hydratase YP_002028935.1 2845564 D 391008 CDS YP_002028936.1 194366326 6477043 2847420..2848856 1 NC_011071.1 PFAM: beta-lactamase; KEGG: fjo:Fjoh_2768 beta-lactamase; beta-lactamase 2848856 6477043 Smal_2553 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002028936.1 2847420 D 391008 CDS YP_002028937.1 194366327 6477044 2849188..2850153 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2850153 6477044 Smal_2554 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002028937.1 2849188 D 391008 CDS YP_002028938.1 194366328 6477045 2850274..2852382 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmy:Pmen_4581 TonB-dependent receptor; TonB-dependent receptor 2852382 6477045 Smal_2555 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002028938.1 2850274 D 391008 CDS YP_002028939.1 194366329 6477046 complement(2852429..2852956) 1 NC_011071.1 hypothetical protein 2852956 6477046 Smal_2556 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028939.1 2852429 R 391008 CDS YP_002028940.1 194366330 6477047 complement(2853073..2853852) 1 NC_011071.1 KEGG: xcb:XC_1522 hypothetical protein; hypothetical protein 2853852 6477047 Smal_2557 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028940.1 2853073 R 391008 CDS YP_002028941.1 194366331 6477048 2854058..2854381 1 NC_011071.1 hypothetical protein 2854381 6477048 Smal_2558 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028941.1 2854058 D 391008 CDS YP_002028942.1 194366332 6477049 complement(2854416..2854991) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: rso:RS01911 putative transcription regulator protein; TetR family transcriptional regulator 2854991 6477049 Smal_2559 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028942.1 2854416 R 391008 CDS YP_002028943.1 194366333 6477050 2855061..2855606 1 NC_011071.1 KEGG: aeh:Mlg_2112 hypothetical protein; hypothetical protein 2855606 6477050 Smal_2560 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028943.1 2855061 D 391008 CDS YP_002028944.1 194366334 6477051 complement(2855613..2856746) 1 NC_011071.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pau:PA14_48450 putative peptidyl-arginine deiminase; Agmatine deiminase 2856746 6477051 Smal_2561 Stenotrophomonas maltophilia R551-3 Agmatine deiminase YP_002028944.1 2855613 R 391008 CDS YP_002028945.1 194366335 6477052 2856852..2857736 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_48500 putative transcriptional regulator; LysR family transcriptional regulator 2857736 6477052 Smal_2562 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028945.1 2856852 D 391008 CDS YP_002028946.1 194366336 6477053 complement(2857711..2858496) 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sus:Acid_2072 lipolytic enzyme, G-D-S-L family; G-D-S-L family lipolytic protein 2858496 6477053 Smal_2563 Stenotrophomonas maltophilia R551-3 G-D-S-L family lipolytic protein YP_002028946.1 2857711 R 391008 CDS YP_002028947.1 194366337 6477054 complement(2858545..2859504) 1 NC_011071.1 KEGG: swi:Swit_2733 hypothetical protein; hypothetical protein 2859504 6477054 Smal_2564 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028947.1 2858545 R 391008 CDS YP_002028948.1 194366338 6477055 2859649..2860632 1 NC_011071.1 KEGG: rba:RB9964 hypothetical protein-transmembrane prediction; hypothetical protein 2860632 6477055 Smal_2565 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028948.1 2859649 D 391008 CDS YP_002028949.1 194366339 6477056 complement(2860643..2860963) 1 NC_011071.1 hypothetical protein 2860963 6477056 Smal_2566 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028949.1 2860643 R 391008 CDS YP_002028950.1 194366340 6477057 complement(2861180..2863642) 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xfa:XF2551 hypothetical protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 2863642 6477057 Smal_2567 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002028950.1 2861180 R 391008 CDS YP_002028951.1 194366341 6477058 complement(2863810..2864139) 1 NC_011071.1 KEGG: cak:Caul_3766 hypothetical protein; hypothetical protein 2864139 6477058 Smal_2568 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028951.1 2863810 R 391008 CDS YP_002028952.1 194366342 6477059 2864601..2865218 1 NC_011071.1 KEGG: xcb:XC_2289 hypothetical protein; hypothetical protein 2865218 6477059 Smal_2569 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028952.1 2864601 D 391008 CDS YP_002028953.1 194366343 6477060 2865231..2866649 1 NC_011071.1 KEGG: xcb:XC_2288 hypothetical protein; hypothetical protein 2866649 6477060 Smal_2570 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028953.1 2865231 D 391008 CDS YP_002028954.1 194366344 6477061 2866709..2867485 1 NC_011071.1 KEGG: gvi:gll2767 hypothetical protein; hypothetical protein 2867485 6477061 Smal_2571 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028954.1 2866709 D 391008 CDS YP_002028955.1 194366345 6477062 2867463..2867855 1 NC_011071.1 KEGG: aav:Aave_1550 hypothetical protein; hypothetical protein 2867855 6477062 Smal_2572 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028955.1 2867463 D 391008 CDS YP_002028956.1 194366346 6477063 complement(2867872..2869302) 1 NC_011071.1 PFAM: beta-lactamase; KEGG: eli:ELI_02300 beta-lactamase class C family protein; beta-lactamase 2869302 6477063 Smal_2573 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002028956.1 2867872 R 391008 CDS YP_002028957.1 194366347 6477064 complement(2869367..2869876) 1 NC_011071.1 KEGG: lil:LA3260 hypothetical protein; hypothetical protein 2869876 6477064 Smal_2574 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028957.1 2869367 R 391008 CDS YP_002028958.1 194366348 6477065 complement(2869928..2870833) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05458 probable transcription regulator protein; LysR family transcriptional regulator 2870833 6477065 Smal_2575 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002028958.1 2869928 R 391008 CDS YP_002028959.1 194366349 6477066 2870953..2871942 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5639 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 2871942 6477066 Smal_2576 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase zinc-binding domain-containing protein YP_002028959.1 2870953 D 391008 CDS YP_002028960.1 194366350 6477067 complement(2871986..2874508) 1 NC_011071.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: xcv:XCV1673 glucose dehydrogenase; membrane-bound PQQ-dependent dehydrogenase 2874508 6477067 Smal_2577 Stenotrophomonas maltophilia R551-3 membrane-bound PQQ-dependent dehydrogenase YP_002028960.1 2871986 R 391008 CDS YP_002028961.1 194366351 6477068 complement(2874640..2877354) 1 NC_011071.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2877354 6477068 Smal_2578 Stenotrophomonas maltophilia R551-3 DNA gyrase subunit A YP_002028961.1 2874640 R 391008 CDS YP_002028962.1 194366352 6477069 complement(2877574..2878638) 1 NC_011071.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 2878638 mtnA 6477069 mtnA Stenotrophomonas maltophilia R551-3 methylthioribose-1-phosphate isomerase YP_002028962.1 2877574 R 391008 CDS YP_002028963.1 194366353 6477070 complement(2878686..2879417) 1 NC_011071.1 KEGG: xcb:XC_2662 hypothetical protein; hypothetical protein 2879417 6477070 Smal_2580 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028963.1 2878686 R 391008 CDS YP_002028964.1 194366354 6477071 complement(2879558..2880514) 1 NC_011071.1 PFAM: tRNA synthetase class II (D K and N); KEGG: xcb:XC_2663 lysyl-tRNA synthetase; lysine--tRNA ligase 2880514 6477071 Smal_2581 Stenotrophomonas maltophilia R551-3 lysine--tRNA ligase YP_002028964.1 2879558 R 391008 CDS YP_002028965.1 194366355 6477072 complement(2880511..2880996) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xfn:XfasM23_2046 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2880996 6477072 Smal_2582 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002028965.1 2880511 R 391008 CDS YP_002028966.1 194366356 6477073 complement(2881047..2883512) 1 NC_011071.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2883512 ligA 6477073 ligA Stenotrophomonas maltophilia R551-3 NAD-dependent DNA ligase LigA YP_002028966.1 2881047 R 391008 CDS YP_002028967.1 194366357 6477074 2883801..2884925 1 NC_011071.1 PFAM: aminotransferase class I and II; KEGG: xcb:XC_2665 putative aminotransferase; putative aminotransferase 2884925 6477074 Smal_2584 Stenotrophomonas maltophilia R551-3 putative aminotransferase YP_002028967.1 2883801 D 391008 CDS YP_002028968.1 194366358 6477075 complement(2885016..2885756) 1 NC_011071.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2885756 6477075 Smal_2585 Stenotrophomonas maltophilia R551-3 cell division protein ZipA YP_002028968.1 2885016 R 391008 CDS YP_002028969.1 194366359 6477076 complement(2885803..2889306) 1 NC_011071.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: xcv:XCV1664 chromosome segregation protein; chromosome segregation protein SMC 2889306 6477076 Smal_2586 Stenotrophomonas maltophilia R551-3 chromosome segregation protein SMC YP_002028969.1 2885803 R 391008 CDS YP_002028970.1 194366360 6477077 complement(2889569..2890021) 1 NC_011071.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2890021 rplI 6477077 rplI Stenotrophomonas maltophilia R551-3 50S ribosomal protein L9 YP_002028970.1 2889569 R 391008 CDS YP_002028971.1 194366361 6477078 complement(2890126..2890356) 1 NC_011071.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2890356 rpsR 6477078 rpsR Stenotrophomonas maltophilia R551-3 30S ribosomal protein S18 YP_002028971.1 2890126 R 391008 CDS YP_002028972.1 194366362 6477079 complement(2890368..2890805) 1 NC_011071.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2890805 rpsF 6477079 rpsF Stenotrophomonas maltophilia R551-3 30S ribosomal protein S6 YP_002028972.1 2890368 R 391008 CDS YP_002028973.1 194366363 6477080 complement(2891035..2891577) 1 NC_011071.1 PFAM: protein of unknown function UPF0167; KEGG: dac:Daci_1537 hypothetical protein; hypothetical protein 2891577 6477080 Smal_2590 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028973.1 2891035 R 391008 CDS YP_002028974.1 194366364 6477081 complement(2891671..2892009) 1 NC_011071.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: xac:XAC1619 hypothetical protein; iron-sulfur cluster assembly accessory protein 2892009 6477081 Smal_2591 Stenotrophomonas maltophilia R551-3 iron-sulfur cluster assembly accessory protein YP_002028974.1 2891671 R 391008 CDS YP_002028975.1 194366365 6477082 2892139..2893533 1 NC_011071.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2893533 asnC 6477082 asnC Stenotrophomonas maltophilia R551-3 asparaginyl-tRNA synthetase YP_002028975.1 2892139 D 391008 CDS YP_002028976.1 194366366 6477083 2893567..2893866 1 NC_011071.1 KEGG: xcv:XCV1658 hypothetical protein; hypothetical protein 2893866 6477083 Smal_2593 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028976.1 2893567 D 391008 CDS YP_002028977.1 194366367 6477084 2893874..2894188 1 NC_011071.1 KEGG: xac:XAC1616 hypothetical protein; hypothetical protein 2894188 6477084 Smal_2594 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028977.1 2893874 D 391008 CDS YP_002028978.1 194366368 6477085 2894198..2894836 1 NC_011071.1 PFAM: Negative transcriptional regulator; KEGG: xcb:XC_2677 transcriptional regulator protein Pai2; FMN-binding negative transcriptional regulator 2894836 6477085 Smal_2595 Stenotrophomonas maltophilia R551-3 FMN-binding negative transcriptional regulator YP_002028978.1 2894198 D 391008 CDS YP_002028979.1 194366369 6477086 2894910..2895572 1 NC_011071.1 PFAM: carbonic anhydrase; KEGG: xac:XAC1604 carbonic anhydrase; carbonate dehydratase 2895572 6477086 Smal_2596 Stenotrophomonas maltophilia R551-3 carbonate dehydratase YP_002028979.1 2894910 D 391008 CDS YP_002028980.1 194366370 6477087 2895594..2896115 1 NC_011071.1 catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis; 3-hydroxyanthranilate 3,4-dioxygenase 2896115 6477087 Smal_2597 Stenotrophomonas maltophilia R551-3 3-hydroxyanthranilate 3,4-dioxygenase YP_002028980.1 2895594 D 391008 CDS YP_002028981.1 194366371 6477088 2896257..2897531 1 NC_011071.1 KEGG: xcv:XCV1642 putative kynureninase; TIGRFAM: kynureninase; PFAM: aminotransferase class V; kynureninase 2897531 6477088 Smal_2598 Stenotrophomonas maltophilia R551-3 kynureninase YP_002028981.1 2896257 D 391008 CDS YP_002028982.1 194366372 6477089 2897563..2898930 1 NC_011071.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: xcb:XC_2682 kynurenine 3-monooxygenase; kynurenine 3-monooxygenase 2898930 6477089 Smal_2599 Stenotrophomonas maltophilia R551-3 kynurenine 3-monooxygenase YP_002028982.1 2897563 D 391008 CDS YP_002028983.1 194366373 6477090 2898930..2900369 1 NC_011071.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2900369 sbcB 6477090 sbcB Stenotrophomonas maltophilia R551-3 exonuclease I YP_002028983.1 2898930 D 391008 CDS YP_002028984.1 194366374 6477091 2900366..2901052 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcb:XC_2684 hypothetical protein; hypothetical protein 2901052 6477091 Smal_2601 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028984.1 2900366 D 391008 CDS YP_002028985.1 194366375 6477092 2901108..2901659 1 NC_011071.1 KEGG: xac:XAC1597 hypothetical protein; hypothetical protein 2901659 6477092 Smal_2602 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028985.1 2901108 D 391008 CDS YP_002028986.1 194366376 6477093 complement(2901813..2902757) 1 NC_011071.1 PFAM: 5-nucleotidase; KEGG: xac:XAC1596 5'-nucleotidase; 5'-nucleotidase 2902757 6477093 Smal_2603 Stenotrophomonas maltophilia R551-3 5'-nucleotidase YP_002028986.1 2901813 R 391008 CDS YP_002028987.1 194366377 6477094 complement(2902806..2903579) 1 NC_011071.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2903579 ppnK 6477094 ppnK Stenotrophomonas maltophilia R551-3 inorganic polyphosphate/ATP-NAD kinase YP_002028987.1 2902806 R 391008 CDS YP_002028988.1 194366378 6477095 complement(2903770..2908746) 1 NC_011071.1 PFAM: NAD-glutamate dehydrogenase; KEGG: xcv:XCV2674 NAD-specific glutamate dehydrogenase; NAD-glutamate dehydrogenase 2908746 6477095 Smal_2605 Stenotrophomonas maltophilia R551-3 NAD-glutamate dehydrogenase YP_002028988.1 2903770 R 391008 CDS YP_002028989.1 194366379 6477096 2908997..2909653 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xcv:XCV2675 transcriptional regulator, TetR family; TetR family transcriptional regulator 2909653 6477096 Smal_2606 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002028989.1 2908997 D 391008 CDS YP_002028990.1 194366380 6477097 2909653..2910921 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcc:XCC2367 multidrug resistance protein; RND family efflux transporter MFP subunit 2910921 6477097 Smal_2607 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002028990.1 2909653 D 391008 CDS YP_002028991.1 194366381 6477098 2910937..2914110 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xcb:XC_1747 multidrug-efflux transporter AcrB; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2914110 6477098 Smal_2608 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002028991.1 2910937 D 391008 CDS YP_002028992.1 194366382 6477099 complement(2914244..2915392) 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC1562 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2915392 6477099 Smal_2609 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002028992.1 2914244 R 391008 CDS YP_002028993.1 194366383 6477100 2915545..2916474 1 NC_011071.1 PFAM: regulatory protein ArsR; methyltransferase small; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcv:XCV1604 putative transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2916474 6477100 Smal_2610 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002028993.1 2915545 D 391008 CDS YP_002028994.1 194366384 6477101 2916488..2917579 1 NC_011071.1 PFAM: homocysteine S-methyltransferase; KEGG: xcv:XCV1603 5-methyltetrahydrofolate-homocysteine methyltransferase (fragment); homocysteine S-methyltransferase 2917579 6477101 Smal_2611 Stenotrophomonas maltophilia R551-3 homocysteine S-methyltransferase YP_002028994.1 2916488 D 391008 CDS YP_002028995.1 194366385 6477102 2917637..2920321 1 NC_011071.1 KEGG: xac:XAC1559 5-methyltetrahydrofolate-homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; methionine synthase 2920321 6477102 Smal_2612 Stenotrophomonas maltophilia R551-3 methionine synthase YP_002028995.1 2917637 D 391008 CDS YP_002028996.1 194366386 6477103 2920400..2921590 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: hha:Hhal_1813 major facilitator superfamily MFS_1; major facilitator superfamily protein 2921590 6477103 Smal_2613 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002028996.1 2920400 D 391008 CDS YP_002028997.1 194366387 6477104 complement(2921636..2922322) 1 NC_011071.1 KEGG: xcb:XC_2731 hypothetical protein; hypothetical protein 2922322 6477104 Smal_2614 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028997.1 2921636 R 391008 CDS YP_002028998.1 194366388 6477105 complement(2922333..2922572) 1 NC_011071.1 PFAM: SlyX family protein; KEGG: xom:XOO_1947 hypothetical protein; hypothetical protein 2922572 6477105 Smal_2615 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002028998.1 2922333 R 391008 CDS YP_002028999.1 194366389 6477106 complement(2922565..2923914) 1 NC_011071.1 KEGG: xcb:XC_2733 UDP-glucose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 2923914 6477106 Smal_2616 Stenotrophomonas maltophilia R551-3 nucleotide sugar dehydrogenase YP_002028999.1 2922565 R 391008 CDS YP_002029000.1 194366390 6477107 complement(2923938..2924915) 1 NC_011071.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: xcv:XCV1593 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 2924915 6477107 Smal_2617 Stenotrophomonas maltophilia R551-3 FKBP-type peptidylprolyl isomerase YP_002029000.1 2923938 R 391008 CDS YP_002029001.1 194366391 6477108 complement(2925012..2925599) 1 NC_011071.1 PFAM: glutathione peroxidase; KEGG: xcb:XC_2735 ABC transporter vitamin B12 uptake permease; glutathione peroxidase 2925599 6477108 Smal_2618 Stenotrophomonas maltophilia R551-3 glutathione peroxidase YP_002029001.1 2925012 R 391008 CDS YP_002029002.1 194366392 6477109 2925969..2926205 1 NC_011071.1 hypothetical protein 2926205 6477109 Smal_2619 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029002.1 2925969 D 391008 CDS YP_002029003.1 194366393 6477110 2926208..2926567 1 NC_011071.1 PFAM: regulatory protein GntR HTH; KEGG: xac:XAC1548 transcriptional regulator GntR family; GntR family transcriptional regulator 2926567 6477110 Smal_2620 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002029003.1 2926208 D 391008 CDS YP_002029004.1 194366394 6477111 2926567..2927457 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1547 ABC transporter ATP-binding protein; ABC transporter-like protein 2927457 6477111 Smal_2621 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002029004.1 2926567 D 391008 CDS YP_002029005.1 194366395 6477112 2927454..2928476 1 NC_011071.1 KEGG: xcb:XC_2738 hypothetical protein; hypothetical protein 2928476 6477112 Smal_2622 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029005.1 2927454 D 391008 CDS YP_002029006.1 194366396 6477113 2928502..2929389 1 NC_011071.1 KEGG: xcv:XCV1588 putative secreted protein; hypothetical protein 2929389 6477113 Smal_2623 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029006.1 2928502 D 391008 CDS YP_002029007.1 194366397 6477114 2929420..2930037 1 NC_011071.1 KEGG: xcv:XCV1587 putative secreted protein; hypothetical protein 2930037 6477114 Smal_2624 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029007.1 2929420 D 391008 CDS YP_002029008.1 194366398 6477115 2930110..2930568 1 NC_011071.1 KEGG: xcb:XC_2741 hypothetical protein; hypothetical protein 2930568 6477115 Smal_2625 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029008.1 2930110 D 391008 CDS YP_002029009.1 194366399 6477116 complement(2930696..2932123) 1 NC_011071.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2932123 fumC 6477116 fumC Stenotrophomonas maltophilia R551-3 fumarate hydratase YP_002029009.1 2930696 R 391008 CDS YP_002029010.1 194366400 6477117 2932413..2933780 1 NC_011071.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2933780 6477117 Smal_2627 Stenotrophomonas maltophilia R551-3 adenylosuccinate lyase YP_002029010.1 2932413 D 391008 CDS YP_002029011.1 194366401 6477118 2934503..2935918 1 NC_011071.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: xoo:XOO2046 hypothetical protein; cupin 2935918 6477118 Smal_2628 Stenotrophomonas maltophilia R551-3 cupin YP_002029011.1 2934503 D 391008 CDS YP_002029012.1 194366402 6477119 2935928..2936824 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV1579 hypothetical protein; N-acetyltransferase GCN5 2936824 6477119 Smal_2629 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029012.1 2935928 D 391008 CDS YP_002029013.1 194366403 6477120 2937011..2939842 1 NC_011071.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2939842 sucA 6477120 sucA Stenotrophomonas maltophilia R551-3 2-oxoglutarate dehydrogenase E1 component YP_002029013.1 2937011 D 391008 CDS YP_002029014.1 194366404 6477121 2939882..2941084 1 NC_011071.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 2941084 6477121 Smal_2631 Stenotrophomonas maltophilia R551-3 dihydrolipoamide succinyltransferase YP_002029014.1 2939882 D 391008 CDS YP_002029015.1 194366405 6477122 2941148..2942584 1 NC_011071.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2942584 6477122 Smal_2632 Stenotrophomonas maltophilia R551-3 dihydrolipoamide dehydrogenase YP_002029015.1 2941148 D 391008 CDS YP_002029016.1 194366406 6477123 complement(2942733..2942981) 1 NC_011071.1 hypothetical protein 2942981 6477123 Smal_2633 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029016.1 2942733 R 391008 CDS YP_002029017.1 194366407 6477124 complement(2942978..2943190) 1 NC_011071.1 KEGG: ote:Oter_1333 hypothetical protein; hypothetical protein 2943190 6477124 Smal_2634 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029017.1 2942978 R 391008 CDS YP_002029018.1 194366408 6477125 complement(2943359..2944948) 1 NC_011071.1 KEGG: gvi:gll0490 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase 2944948 6477125 Smal_2635 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002029018.1 2943359 R 391008 CDS YP_002029019.1 194366409 6477126 complement(2944948..2947191) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC4368 TonB-dependent receptor; TonB-dependent receptor 2947191 6477126 Smal_2636 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029019.1 2944948 R 391008 CDS YP_002029020.1 194366410 6477127 complement(2947359..2948789) 1 NC_011071.1 unwinds double stranded DNA; replicative DNA helicase 2948789 6477127 Smal_2637 Stenotrophomonas maltophilia R551-3 replicative DNA helicase YP_002029020.1 2947359 R 391008 CDS YP_002029021.1 194366411 6477128 complement(2949135..2949695) 1 NC_011071.1 PFAM: NADPH-dependent FMN reductase; KEGG: xac:XAC1476 hypothetical protein; NADPH-dependent FMN reductase 2949695 6477128 Smal_2638 Stenotrophomonas maltophilia R551-3 NADPH-dependent FMN reductase YP_002029021.1 2949135 R 391008 CDS YP_002029022.1 194366412 6477129 complement(2949762..2951705) 1 NC_011071.1 KEGG: xcv:XCV1533 asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 2951705 6477129 Smal_2639 Stenotrophomonas maltophilia R551-3 asparagine synthase YP_002029022.1 2949762 R 391008 CDS YP_002029023.1 194366413 6477130 complement(2951709..2953988) 1 NC_011071.1 PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: rha:RHA1_ro03301 probable pyruvate dehydrogenase (acetyl-transferring) beta subunit; transketolase domain-containing protein 2953988 6477130 Smal_2640 Stenotrophomonas maltophilia R551-3 transketolase domain-containing protein YP_002029023.1 2951709 R 391008 CDS YP_002029024.1 194366414 6477131 complement(2954066..2954722) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV1532 glutathione transferase; glutathione S-transferase domain-containing protein 2954722 6477131 Smal_2641 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002029024.1 2954066 R 391008 CDS YP_002029025.1 194366415 6477132 complement(2954896..2955438) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hne:HNE_3215 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2955438 6477132 Smal_2642 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029025.1 2954896 R 391008 CDS YP_002029026.1 194366416 6477133 complement(2955570..2956412) 1 NC_011071.1 PFAM: 17 kDa surface antigen; KEGG: xcb:XC_2810 hypothetical protein; 17 kDa surface antigen 2956412 6477133 Smal_2643 Stenotrophomonas maltophilia R551-3 17 kDa surface antigen YP_002029026.1 2955570 R 391008 CDS YP_002029027.1 194366417 6477134 2956575..2956793 1 NC_011071.1 KEGG: xcb:XC_2811 hypothetical protein; hypothetical protein 2956793 6477134 Smal_2644 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029027.1 2956575 D 391008 CDS YP_002029028.1 194366418 6477135 2956790..2957560 1 NC_011071.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: xcv:XCV1526 putative TatD related DNase; TatD family hydrolase 2957560 6477135 Smal_2645 Stenotrophomonas maltophilia R551-3 TatD family hydrolase YP_002029028.1 2956790 D 391008 CDS YP_002029029.1 194366419 6477136 complement(2957639..2958466) 1 NC_011071.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xcb:XC_2813 molybdopterin biosynthesis protein; UBA/THIF-type NAD/FAD binding protein 2958466 6477136 Smal_2646 Stenotrophomonas maltophilia R551-3 UBA/THIF-type NAD/FAD binding protein YP_002029029.1 2957639 R 391008 CDS YP_002029030.1 194366420 6477137 2958544..2958978 1 NC_011071.1 KEGG: xcv:XCV1524 hypothetical protein; hypothetical protein 2958978 6477137 Smal_2647 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029030.1 2958544 D 391008 CDS YP_002029031.1 194366421 6477138 2959115..2959609 1 NC_011071.1 PFAM: 17 kDa surface antigen; KEGG: xcb:XC_2815 peptidoglycan-associated outer membrane lipoprotein; 17 kDa surface antigen 2959609 6477138 Smal_2648 Stenotrophomonas maltophilia R551-3 17 kDa surface antigen YP_002029031.1 2959115 D 391008 CDS YP_002029032.1 194366422 6477139 complement(2959697..2959906) 1 NC_011071.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xac:XAC1465 major cold shock protein; cold-shock DNA-binding domain-containing protein 2959906 6477139 Smal_2649 Stenotrophomonas maltophilia R551-3 cold-shock DNA-binding domain-containing protein YP_002029032.1 2959697 R 391008 CDS YP_002029033.1 194366423 6477140 2960142..2960627 1 NC_011071.1 PFAM: protein of unknown function DUF456; KEGG: xcb:XC_2817 hypothetical protein; hypothetical protein 2960627 6477140 Smal_2650 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029033.1 2960142 D 391008 CDS YP_002029034.1 194366424 6477141 2960747..2961901 1 NC_011071.1 PFAM: phospholipase A1; KEGG: xcb:XC_2818 phospholipase; phospholipase A(1) 2961901 6477141 Smal_2651 Stenotrophomonas maltophilia R551-3 phospholipase A(1) YP_002029034.1 2960747 D 391008 CDS YP_002029035.1 194366425 6477142 2961901..2962242 1 NC_011071.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: dac:Daci_1593 arsenate reductase; arsenate reductase 2962242 6477142 Smal_2652 Stenotrophomonas maltophilia R551-3 arsenate reductase YP_002029035.1 2961901 D 391008 CDS YP_002029036.1 194366426 6477143 complement(2962314..2962949) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV1518 glutathione transferase; glutathione S-transferase domain-containing protein 2962949 6477143 Smal_2653 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002029036.1 2962314 R 391008 CDS YP_002029037.1 194366427 6477144 complement(2963008..2963343) 1 NC_011071.1 hypothetical protein 2963343 6477144 Smal_2654 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029037.1 2963008 R 391008 CDS YP_002029038.1 194366428 6477145 complement(2963464..2964981) 1 NC_011071.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: xcv:XCV1517 putative fumarate hydratase; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 2964981 6477145 Smal_2655 Stenotrophomonas maltophilia R551-3 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_002029038.1 2963464 R 391008 CDS YP_002029039.1 194366429 6477146 2965161..2966057 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 subunit 2966057 6477146 Smal_2656 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002029039.1 2965161 D 391008 CDS YP_002029040.1 194366430 6477147 2966094..2966543 1 NC_011071.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein; alkylhydroperoxidase-like protein 2966543 6477147 Smal_2657 Stenotrophomonas maltophilia R551-3 alkylhydroperoxidase-like protein YP_002029040.1 2966094 D 391008 CDS YP_002029041.1 194366431 6477148 2966786..2968657 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1459 ABC transporter ATP-binding protein; ABC transporter-like protein 2968657 6477148 Smal_2658 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002029041.1 2966786 D 391008 CDS YP_002029042.1 194366432 6477149 2968737..2969516 1 NC_011071.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: xcb:XC_2824 ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2969516 6477149 Smal_2659 Stenotrophomonas maltophilia R551-3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002029042.1 2968737 D 391008 CDS YP_002029043.1 194366433 6477150 complement(2969595..2970074) 1 NC_011071.1 PFAM: glutathione peroxidase; KEGG: xcb:XC_2825 glutathione peroxidase-like protein; glutathione peroxidase 2970074 6477150 Smal_2660 Stenotrophomonas maltophilia R551-3 glutathione peroxidase YP_002029043.1 2969595 R 391008 CDS YP_002029044.1 194366434 6477151 2970235..2972373 1 NC_011071.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xac:XAC1456 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 2972373 6477151 Smal_2661 Stenotrophomonas maltophilia R551-3 peptidyl-dipeptidase Dcp YP_002029044.1 2970235 D 391008 CDS YP_002029045.1 194366435 6477152 complement(2972465..2973580) 1 NC_011071.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 2973580 6477152 Smal_2662 Stenotrophomonas maltophilia R551-3 cyclopropane-fatty-acyl-phospholipid synthase YP_002029045.1 2972465 R 391008 CDS YP_002029046.1 194366436 6477153 complement(2973600..2974481) 1 NC_011071.1 KEGG: xcb:XC_2828 hypothetical protein; hypothetical protein 2974481 6477153 Smal_2663 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029046.1 2973600 R 391008 CDS YP_002029047.1 194366437 6477154 complement(2974519..2974821) 1 NC_011071.1 KEGG: bbr:BB3384 hypothetical protein; hypothetical protein 2974821 6477154 Smal_2664 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029047.1 2974519 R 391008 CDS YP_002029048.1 194366438 6477155 2975031..2975192 1 NC_011071.1 KEGG: xom:XOO_2230 hypothetical protein; hypothetical protein 2975192 6477155 Smal_2665 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029048.1 2975031 D 391008 CDS YP_002029049.1 194366439 6477156 complement(2975248..2975874) 1 NC_011071.1 PFAM: Rhomboid family protein; KEGG: xcb:XC_2831 hypothetical protein; rhomboid family protein 2975874 6477156 Smal_2666 Stenotrophomonas maltophilia R551-3 rhomboid family protein YP_002029049.1 2975248 R 391008 CDS YP_002029050.1 194366440 6477157 complement(2975882..2977447) 1 NC_011071.1 PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: xcv:XCV1507 proton-dependent oligopeptide transporter family protein; TGF-beta receptor type I/II extracellular region 2977447 6477157 Smal_2667 Stenotrophomonas maltophilia R551-3 TGF-beta receptor type I/II extracellular region YP_002029050.1 2975882 R 391008 CDS YP_002029051.1 194366441 6477158 2977610..2978446 1 NC_011071.1 KEGG: xcb:XC_1916 hypothetical protein; hypothetical protein 2978446 6477158 Smal_2668 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029051.1 2977610 D 391008 CDS YP_002029052.1 194366442 6477159 complement(2978611..2979222) 1 NC_011071.1 PFAM: manganese and iron superoxide dismutase; KEGG: xcb:XC_1837 superoxide dismutase; Superoxide dismutase 2979222 6477159 Smal_2669 Stenotrophomonas maltophilia R551-3 Superoxide dismutase YP_002029052.1 2978611 R 391008 CDS YP_002029053.1 194366443 6477160 2979442..2979891 1 NC_011071.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: xcb:XC_1836 ribonuclease; guanine-specific ribonuclease N1 and T1 2979891 6477160 Smal_2670 Stenotrophomonas maltophilia R551-3 guanine-specific ribonuclease N1 and T1 YP_002029053.1 2979442 D 391008 CDS YP_002029054.1 194366444 6477161 2979891..2980304 1 NC_011071.1 KEGG: xac:XAC2388 hypothetical protein; hypothetical protein 2980304 6477161 Smal_2671 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029054.1 2979891 D 391008 CDS YP_002029055.1 194366445 6477162 complement(2980448..2982214) 1 NC_011071.1 KEGG: xcv:XCV2430 hypothetical protein; hypothetical protein 2982214 6477162 Smal_2672 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029055.1 2980448 R 391008 CDS YP_002029056.1 194366446 6477163 complement(2982225..2982824) 1 NC_011071.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: xac:XAC2117 hypothetical protein; HesB/YadR/YfhF-family protein 2982824 6477163 Smal_2673 Stenotrophomonas maltophilia R551-3 HesB/YadR/YfhF-family protein YP_002029056.1 2982225 R 391008 CDS YP_002029057.1 194366447 6477164 2982915..2983265 1 NC_011071.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 2983265 phhB 6477164 phhB Stenotrophomonas maltophilia R551-3 pterin-4-alpha-carbinolamine dehydratase YP_002029057.1 2982915 D 391008 CDS YP_002029058.1 194366448 6477165 2983262..2983678 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: xcv:XCV2427 putative secreted protein; TonB family protein 2983678 6477165 Smal_2675 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002029058.1 2983262 D 391008 CDS YP_002029059.1 194366449 6477166 2983776..2984585 1 NC_011071.1 PFAM: zinc/iron permease; KEGG: xcb:XC_2100 zinc transporter ZupT; zinc transporter ZupT 2984585 6477166 Smal_2676 Stenotrophomonas maltophilia R551-3 zinc transporter ZupT YP_002029059.1 2983776 D 391008 CDS YP_002029060.1 194366450 6477167 complement(2984677..2985651) 1 NC_011071.1 KEGG: xcb:XC_2099 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2985651 6477167 Smal_2677 Stenotrophomonas maltophilia R551-3 RluA family pseudouridine synthase YP_002029060.1 2984677 R 391008 CDS YP_002029061.1 194366451 6477168 2986059..2989334 1 NC_011071.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: xcb:XC_2098 ribonuclease E; ribonuclease, Rne/Rng family 2989334 6477168 Smal_2678 Stenotrophomonas maltophilia R551-3 ribonuclease, Rne/Rng family YP_002029061.1 2986059 D 391008 CDS YP_002029062.1 194366452 6477169 complement(2989477..2990370) 1 NC_011071.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC2306 hypothetical protein; endonuclease/exonuclease/phosphatase 2990370 6477169 Smal_2679 Stenotrophomonas maltophilia R551-3 endonuclease/exonuclease/phosphatase YP_002029062.1 2989477 R 391008 CDS YP_002029063.1 194366453 6477170 complement(2990373..2993540) 1 NC_011071.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: xcv:XCV2505 putative secreted protein; coagulation factor 5/8 type domain-containing protein 2993540 6477170 Smal_2680 Stenotrophomonas maltophilia R551-3 coagulation factor 5/8 type domain-containing protein YP_002029063.1 2990373 R 391008 CDS YP_002029064.1 194366454 6477171 complement(2993537..2994373) 1 NC_011071.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xac:XAC2308 ABC transporter sugar permease; monosaccharide-transporting ATPase 2994373 6477171 Smal_2681 Stenotrophomonas maltophilia R551-3 monosaccharide-transporting ATPase YP_002029064.1 2993537 R 391008 CDS YP_002029065.1 194366455 6477172 complement(2994370..2995251) 1 NC_011071.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xom:XOO_2039 ABC transporter sugar permease; binding-protein-dependent transport system inner membrane protein 2995251 6477172 Smal_2682 Stenotrophomonas maltophilia R551-3 binding-protein-dependent transport system inner membrane protein YP_002029065.1 2994370 R 391008 CDS YP_002029066.1 194366456 6477173 complement(2995248..2996588) 1 NC_011071.1 PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_1912 ABC transporter sugar binding protein; family 1 extracellular solute-binding protein 2996588 6477173 Smal_2683 Stenotrophomonas maltophilia R551-3 family 1 extracellular solute-binding protein YP_002029066.1 2995248 R 391008 CDS YP_002029067.1 194366457 6477174 complement(2996593..2998197) 1 NC_011071.1 KEGG: xcv:XCV2509 putative secreted protein; hypothetical protein 2998197 6477174 Smal_2684 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029067.1 2996593 R 391008 CDS YP_002029068.1 194366458 6477175 complement(2998450..3001530) 1 NC_011071.1 PFAM: TonB-dependent receptor; KEGG: xac:XAC4274 OmpA-related protein; TonB-dependent receptor 3001530 6477175 Smal_2685 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029068.1 2998450 R 391008 CDS YP_002029069.1 194366459 6477176 complement(3001608..3002630) 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcv:XCV2511 transcriptional regulator, LacI family; LacI family transcriptional regulator 3002630 6477176 Smal_2686 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002029069.1 3001608 R 391008 CDS YP_002029070.1 194366460 6477177 complement(3002794..3003069) 1 NC_011071.1 PFAM: BolA family protein; KEGG: xcb:XC_1908 hypothetical protein; BolA family protein 3003069 6477177 Smal_2687 Stenotrophomonas maltophilia R551-3 BolA family protein YP_002029070.1 3002794 R 391008 CDS YP_002029071.1 194366461 6477178 complement(3003066..3003365) 1 NC_011071.1 PFAM: YCII-related; KEGG: xac:XAC2315 YciI-like protein; hypothetical protein 3003365 6477178 Smal_2688 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029071.1 3003066 R 391008 CDS YP_002029072.1 194366462 6477179 3003727..3004632 1 NC_011071.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: xcb:XC_1906 hypothetical protein; chromosome segregation and condensation protein ScpA 3004632 6477179 Smal_2689 Stenotrophomonas maltophilia R551-3 chromosome segregation and condensation protein ScpA YP_002029072.1 3003727 D 391008 CDS YP_002029073.1 194366463 6477180 3004646..3005521 1 NC_011071.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: xom:XOO_2031 hypothetical protein; segregation and condensation protein B 3005521 6477180 Smal_2690 Stenotrophomonas maltophilia R551-3 segregation and condensation protein B YP_002029073.1 3004646 D 391008 CDS YP_002029074.1 194366464 6477181 3005514..3007163 1 NC_011071.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xac:XAC2318 pseudouridylate synthase; RNA-binding S4 domain-containing protein 3007163 6477181 Smal_2691 Stenotrophomonas maltophilia R551-3 RNA-binding S4 domain-containing protein YP_002029074.1 3005514 D 391008 CDS YP_002029075.1 194366465 6477182 complement(3007280..3008080) 1 NC_011071.1 PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_4070 transcriptional regulator, AraC family; AraC protein arabinose-binding/dimerisation 3008080 6477182 Smal_2692 Stenotrophomonas maltophilia R551-3 AraC protein arabinose-binding/dimerisation YP_002029075.1 3007280 R 391008 CDS YP_002029076.1 194366466 6477183 3008159..3009313 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4069 multidrug resistance protein D; major facilitator superfamily protein 3009313 6477183 Smal_2693 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002029076.1 3008159 D 391008 CDS YP_002029077.1 194366467 6477184 complement(3009392..3009799) 1 NC_011071.1 hypothetical protein 3009799 6477184 Smal_2694 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029077.1 3009392 R 391008 CDS YP_002029078.1 194366468 6477185 3010153..3010446 1 NC_011071.1 hypothetical protein 3010446 6477185 Smal_2695 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029078.1 3010153 D 391008 CDS YP_002029079.1 194366469 6477186 complement(3010433..3010867) 1 NC_011071.1 KEGG: xcb:XC_1903 hypothetical protein; hypothetical protein 3010867 6477186 Smal_2696 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029079.1 3010433 R 391008 CDS YP_002029080.1 194366470 6477187 complement(3010969..3011775) 1 NC_011071.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xcv:XCV2520 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3011775 6477187 Smal_2697 Stenotrophomonas maltophilia R551-3 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002029080.1 3010969 R 391008 CDS YP_002029081.1 194366471 6477188 complement(3011789..3012937) 1 NC_011071.1 catalyzes the transfer of an amino moiety; putative aminotransferase 3012937 6477188 Smal_2698 Stenotrophomonas maltophilia R551-3 putative aminotransferase YP_002029081.1 3011789 R 391008 CDS YP_002029082.1 194366472 6477189 3013124..3013753 1 NC_011071.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3013753 6477189 Smal_2699 Stenotrophomonas maltophilia R551-3 cytochrome c biogenesis protein CcmA YP_002029082.1 3013124 D 391008 CDS YP_002029083.1 194366473 6477190 3013750..3014445 1 NC_011071.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: xcb:XC_1897 ABC transporter heme permease; heme exporter protein CcmB 3014445 6477190 Smal_2700 Stenotrophomonas maltophilia R551-3 heme exporter protein CcmB YP_002029083.1 3013750 D 391008 CDS YP_002029084.1 194366474 6477191 3014489..3015259 1 NC_011071.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: xac:XAC2325 ABC transporter heme permease; heme exporter protein CcmC 3015259 6477191 Smal_2701 Stenotrophomonas maltophilia R551-3 heme exporter protein CcmC YP_002029084.1 3014489 D 391008 CDS YP_002029085.1 194366475 6477192 3015256..3015444 1 NC_011071.1 TIGRFAM: heme exporter protein CcmD; KEGG: xcv:XCV2525 heme exporter protein D (c-type cytochrome biogenesis protein CcmD); heme exporter protein CcmD 3015444 6477192 Smal_2702 Stenotrophomonas maltophilia R551-3 heme exporter protein CcmD YP_002029085.1 3015256 D 391008 CDS YP_002029086.1 194366476 6477193 3015441..3015902 1 NC_011071.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3015902 6477193 Smal_2703 Stenotrophomonas maltophilia R551-3 cytochrome c-type biogenesis protein CcmE YP_002029086.1 3015441 D 391008 CDS YP_002029087.1 194366477 6477194 3015903..3017822 1 NC_011071.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: xcb:XC_1893 C-type cytochrome biogenesis membrane protein; cytochrome c-type biogenesis protein CcmF 3017822 6477194 Smal_2704 Stenotrophomonas maltophilia R551-3 cytochrome c-type biogenesis protein CcmF YP_002029087.1 3015903 D 391008 CDS YP_002029088.1 194366478 6477195 3017831..3018448 1 NC_011071.1 TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_1892 C-type cytochrome biogenesis protein/thioredoxin DsbE; protein thiol/disulfide oxidoreductase DsbE 3018448 6477195 Smal_2705 Stenotrophomonas maltophilia R551-3 protein thiol/disulfide oxidoreductase DsbE YP_002029088.1 3017831 D 391008 CDS YP_002029089.1 194366479 6477196 3018453..3018902 1 NC_011071.1 PFAM: cytochrome C biogenesis protein; KEGG: xac:XAC2330 C-type cytochrome biogenesis protein; cytochrome C biogenesis protein 3018902 6477196 Smal_2706 Stenotrophomonas maltophilia R551-3 cytochrome C biogenesis protein YP_002029089.1 3018453 D 391008 CDS YP_002029090.1 194366480 6477197 3018899..3019885 1 NC_011071.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC2331 C-type cytochrome biogenesis protein; hypothetical protein 3019885 6477197 Smal_2707 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029090.1 3018899 D 391008 CDS YP_002029091.1 194366481 6477198 3020048..3021160 1 NC_011071.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 3021160 metX 6477198 metX Stenotrophomonas maltophilia R551-3 homoserine O-acetyltransferase YP_002029091.1 3020048 D 391008 CDS YP_002029092.1 194366482 6477199 3021215..3021505 1 NC_011071.1 PFAM: protein of unknown function DUF1294; KEGG: xcv:XCV2532 hypothetical protein; hypothetical protein 3021505 6477199 Smal_2709 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029092.1 3021215 D 391008 CDS YP_002029093.1 194366483 6477200 complement(3021597..3023270) 1 NC_011071.1 KEGG: xcv:XCV2533 ABC transporter permease and ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC 3023270 6477200 Smal_2710 Stenotrophomonas maltophilia R551-3 cysteine ABC transporter permease/ATP-binding protein CydC YP_002029093.1 3021597 R 391008 CDS YP_002029094.1 194366484 6477201 complement(3023267..3025012) 1 NC_011071.1 KEGG: xcv:XCV2534 ABC transporter permease and ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydD 3025012 6477201 Smal_2711 Stenotrophomonas maltophilia R551-3 cysteine ABC transporter permease/ATP-binding protein CydD YP_002029094.1 3023267 R 391008 CDS YP_002029095.1 194366485 6477202 3025241..3026824 1 NC_011071.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: xcb:XC_1885 cytochrome d ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 3026824 6477202 Smal_2712 Stenotrophomonas maltophilia R551-3 cytochrome bd ubiquinol oxidase subunit I YP_002029095.1 3025241 D 391008 CDS YP_002029096.1 194366486 6477203 3026840..3027994 1 NC_011071.1 KEGG: xcb:XC_1884 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3027994 6477203 Smal_2713 Stenotrophomonas maltophilia R551-3 cytochrome d ubiquinol oxidase subunit II YP_002029096.1 3026840 D 391008 CDS YP_002029097.1 194366487 6477204 3028049..3028165 1 NC_011071.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: xom:XOO_2508 hypothetical protein; cyd operon protein YbgT 3028165 6477204 Smal_2714 Stenotrophomonas maltophilia R551-3 cyd operon protein YbgT YP_002029097.1 3028049 D 391008 CDS YP_002029098.1 194366488 6477207 3028717..3029922 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: xom:XOO_2509 MFS transporter; major facilitator superfamily protein 3029922 6477207 Smal_2715 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002029098.1 3028717 D 391008 CDS YP_002029099.1 194366489 6477208 3030265..3032292 1 NC_011071.1 KEGG: xom:XOO_3691 HmsH protein; HmsH protein 3032292 6477208 Smal_2716 Stenotrophomonas maltophilia R551-3 HmsH protein YP_002029099.1 3030265 D 391008 CDS YP_002029100.1 194366490 6477209 3032294..3034180 1 NC_011071.1 PFAM: polysaccharide deacetylase; KEGG: xom:XOO_3692 HmsF protein; polysaccharide deacetylase 3034180 6477209 Smal_2717 Stenotrophomonas maltophilia R551-3 polysaccharide deacetylase YP_002029100.1 3032294 D 391008 CDS YP_002029101.1 194366491 6477210 3034182..3035438 1 NC_011071.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 3035438 6477210 Smal_2718 Stenotrophomonas maltophilia R551-3 N-glycosyltransferase YP_002029101.1 3034182 D 391008 CDS YP_002029102.1 194366492 6477211 3035435..3035905 1 NC_011071.1 KEGG: xom:XOO_3694 hypothetical protein; hypothetical protein 3035905 6477211 Smal_2719 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029102.1 3035435 D 391008 CDS YP_002029103.1 194366493 6477212 complement(3035945..3037216) 1 NC_011071.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3037216 proA 6477212 proA Stenotrophomonas maltophilia R551-3 gamma-glutamyl phosphate reductase YP_002029103.1 3035945 R 391008 CDS YP_002029104.1 194366494 6477213 complement(3037213..3038370) 1 NC_011071.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3038370 6477213 Smal_2721 Stenotrophomonas maltophilia R551-3 gamma-glutamyl kinase YP_002029104.1 3037213 R 391008 CDS YP_002029105.1 194366495 6477214 complement(3038381..3038644) 1 NC_011071.1 PFAM: YCII-related; KEGG: xcv:XCV2543 hypothetical protein; hypothetical protein 3038644 6477214 Smal_2722 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029105.1 3038381 R 391008 CDS YP_002029106.1 194366496 6477215 complement(3038644..3039939) 1 NC_011071.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3039939 6477215 Smal_2723 Stenotrophomonas maltophilia R551-3 argininosuccinate lyase YP_002029106.1 3038644 R 391008 CDS YP_002029107.1 194366497 6477216 complement(3039960..3040913) 1 NC_011071.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 3040913 argC 6477216 argC Stenotrophomonas maltophilia R551-3 N-acetyl-gamma-glutamyl-phosphate reductase YP_002029107.1 3039960 R 391008 CDS YP_002029108.1 194366498 6477217 complement(3040910..3041509) 1 NC_011071.1 KEGG: xcb:XC_1874 amino-acid acetyltransferase; amino-acid acetyltransferase 3041509 6477217 Smal_2725 Stenotrophomonas maltophilia R551-3 amino-acid acetyltransferase YP_002029108.1 3040910 R 391008 CDS YP_002029109.1 194366499 6477218 complement(3041514..3042842) 1 NC_011071.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3042842 6477218 Smal_2726 Stenotrophomonas maltophilia R551-3 acetylglutamate kinase YP_002029109.1 3041514 R 391008 CDS YP_002029110.1 194366500 6477219 complement(3042918..3044006) 1 NC_011071.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 3044006 6477219 Smal_2727 Stenotrophomonas maltophilia R551-3 acetylornithine deacetylase YP_002029110.1 3042918 R 391008 CDS YP_002029111.1 194366501 6477220 complement(3044139..3045332) 1 NC_011071.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate; argininosuccinate synthase 3045332 6477220 Smal_2728 Stenotrophomonas maltophilia R551-3 argininosuccinate synthase YP_002029111.1 3044139 R 391008 CDS YP_002029112.1 194366502 6477221 complement(3045401..3046411) 1 NC_011071.1 catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway; N-acetylornithine carbamoyltransferase 3046411 6477221 Smal_2729 Stenotrophomonas maltophilia R551-3 N-acetylornithine carbamoyltransferase YP_002029112.1 3045401 R 391008 CDS YP_002029113.1 194366503 6477222 complement(3046731..3047300) 1 NC_011071.1 KEGG: xcv:XCV2552 hypothetical protein; hypothetical protein 3047300 6477222 Smal_2730 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029113.1 3046731 R 391008 CDS YP_002029114.1 194366504 6477223 3047489..3048865 1 NC_011071.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3048865 cysS 6477223 cysS Stenotrophomonas maltophilia R551-3 cysteinyl-tRNA synthetase YP_002029114.1 3047489 D 391008 CDS YP_002029115.1 194366505 6477224 3048920..3049372 1 NC_011071.1 PFAM: Fe-S metabolism associated SufE; KEGG: xac:XAC2355 hypothetical protein; Fe-S metabolism associated SufE 3049372 6477224 Smal_2732 Stenotrophomonas maltophilia R551-3 Fe-S metabolism associated SufE YP_002029115.1 3048920 D 391008 CDS YP_002029116.1 194366506 6477225 3049369..3050616 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC2356 drug:proton antiporter; major facilitator superfamily protein 3050616 6477225 Smal_2733 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002029116.1 3049369 D 391008 CDS YP_002029117.1 194366507 6477226 complement(3051008..3052225) 1 NC_011071.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: xac:XAC2358 DnaK supressor; TraR/DksA family transcriptional regulator 3052225 6477226 Smal_2734 Stenotrophomonas maltophilia R551-3 TraR/DksA family transcriptional regulator YP_002029117.1 3051008 R 391008 CDS YP_002029118.1 194366508 6477227 3052498..3052752 1 NC_011071.1 PFAM: protein of unknown function DUF37; KEGG: xcb:XC_1859 hypothetical protein; hypothetical protein 3052752 6477227 Smal_2735 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029118.1 3052498 D 391008 CDS YP_002029119.1 194366509 6477228 3052754..3054100 1 NC_011071.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3054100 6477228 Smal_2736 Stenotrophomonas maltophilia R551-3 dihydroorotase YP_002029119.1 3052754 D 391008 CDS YP_002029120.1 194366510 6477229 3054100..3054945 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xcc:XCC2258 peptidase; peptidase M23 3054945 6477229 Smal_2737 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002029120.1 3054100 D 391008 CDS YP_002029121.1 194366511 6477230 complement(3054992..3055696) 1 NC_011071.1 KEGG: xac:XAC2375 hypothetical protein; hypothetical protein 3055696 6477230 Smal_2738 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029121.1 3054992 R 391008 CDS YP_002029122.1 194366512 6477231 complement(3055708..3056403) 1 NC_011071.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3056403 6477231 Smal_2739 Stenotrophomonas maltophilia R551-3 phosphoglycolate phosphatase YP_002029122.1 3055708 R 391008 CDS YP_002029123.1 194366513 6477232 complement(3056400..3057116) 1 NC_011071.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 3057116 6477232 Smal_2740 Stenotrophomonas maltophilia R551-3 3-demethylubiquinone-9 3-methyltransferase YP_002029123.1 3056400 R 391008 CDS YP_002029124.1 194366514 6477233 complement(3057140..3058483) 1 NC_011071.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 3058483 6477233 Smal_2741 Stenotrophomonas maltophilia R551-3 N-ethylammeline chlorohydrolase YP_002029124.1 3057140 R 391008 CDS YP_002029125.1 194366515 6477234 complement(3058642..3059208) 1 NC_011071.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3059208 6477234 Smal_2742 Stenotrophomonas maltophilia R551-3 elongation factor P YP_002029125.1 3058642 R 391008 CDS YP_002029126.1 194366516 6477235 3059306..3060346 1 NC_011071.1 KEGG: xcb:XC_1842 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 3060346 6477235 Smal_2743 Stenotrophomonas maltophilia R551-3 lysine 2,3-aminomutase YodO family protein YP_002029126.1 3059306 D 391008 CDS YP_002029127.1 194366517 6477236 complement(3060420..3062546) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: xac:XAC2382 GGDEF family protein; diguanylate cyclase/phosphodiesterase 3062546 6477236 Smal_2744 Stenotrophomonas maltophilia R551-3 diguanylate cyclase/phosphodiesterase YP_002029127.1 3060420 R 391008 CDS YP_002029128.1 194366518 6477237 complement(3062543..3063445) 1 NC_011071.1 KEGG: xom:XOO_2554 phosphate-binding protein; phosphate-binding protein 3063445 6477237 Smal_2745 Stenotrophomonas maltophilia R551-3 phosphate-binding protein YP_002029128.1 3062543 R 391008 CDS YP_002029129.1 194366519 6477238 complement(3063522..3064292) 1 NC_011071.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: xac:XAC2384 tRNA/rRNA methyltransferase; TrmH family, group 1 RNA methyltransferase 3064292 6477238 Smal_2746 Stenotrophomonas maltophilia R551-3 TrmH family, group 1 RNA methyltransferase YP_002029129.1 3063522 R 391008 CDS YP_002029130.1 194366520 6477239 3064413..3065240 1 NC_011071.1 PFAM: inositol monophosphatase; KEGG: xac:XAC2385 extragenic supressor protein SuhB; inositol-phosphate phosphatase 3065240 6477239 Smal_2747 Stenotrophomonas maltophilia R551-3 inositol-phosphate phosphatase YP_002029130.1 3064413 D 391008 CDS YP_002029131.1 194366521 6477240 complement(3065500..3066366) 1 NC_011071.1 putative metalloprotease; heat shock protein HtpX 3066366 6477240 Smal_2748 Stenotrophomonas maltophilia R551-3 heat shock protein HtpX YP_002029131.1 3065500 R 391008 CDS YP_002029132.1 194366522 6477241 3066460..3067380 1 NC_011071.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: xcb:XC_1822 aminoacyl-tRNA synthetase: glutamyl-like protein; glutamate--tRNA ligase 3067380 6477241 Smal_2749 Stenotrophomonas maltophilia R551-3 glutamate--tRNA ligase YP_002029132.1 3066460 D 391008 CDS YP_002029133.1 194366523 6477242 3067398..3068138 1 NC_011071.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: xcb:XC_1821 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 3068138 6477242 Smal_2750 Stenotrophomonas maltophilia R551-3 acetoacetyl-CoA reductase YP_002029133.1 3067398 D 391008 CDS YP_002029134.1 194366524 6477243 3068323..3068868 1 NC_011071.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: xcb:XC_1820 hypothetical protein; polyhydroxyalkonate synthesis repressor PhaR 3068868 6477243 Smal_2751 Stenotrophomonas maltophilia R551-3 polyhydroxyalkonate synthesis repressor PhaR YP_002029134.1 3068323 D 391008 CDS YP_002029135.1 194366525 6477244 complement(3068944..3069900) 1 NC_011071.1 PFAM: GumN family protein; KEGG: xcv:XCV2600 putative secreted protein; GumN family protein 3069900 6477244 Smal_2752 Stenotrophomonas maltophilia R551-3 GumN family protein YP_002029135.1 3068944 R 391008 CDS YP_002029136.1 194366526 6477245 complement(3069902..3070831) 1 NC_011071.1 PFAM: protein of unknown function DUF1684; KEGG: xcv:XCV2601 hypothetical protein; hypothetical protein 3070831 6477245 Smal_2753 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029136.1 3069902 R 391008 CDS YP_002029137.1 194366527 6477246 complement(3070843..3072747) 1 NC_011071.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3072747 mutL 6477246 mutL Stenotrophomonas maltophilia R551-3 DNA mismatch repair protein YP_002029137.1 3070843 R 391008 CDS YP_002029138.1 194366528 6477247 complement(3072892..3074457) 1 NC_011071.1 PFAM: cell wall hydrolase/autolysin; KEGG: xac:XAC2406 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 3074457 6477247 Smal_2755 Stenotrophomonas maltophilia R551-3 N-acetylmuramoyl-L-alanine amidase YP_002029138.1 3072892 R 391008 CDS YP_002029139.1 194366529 6477248 complement(3074540..3075022) 1 NC_011071.1 PFAM: protein of unknown function UPF0079; KEGG: xcv:XCV2604 hypothetical protein; hypothetical protein 3075022 6477248 Smal_2756 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029139.1 3074540 R 391008 CDS YP_002029140.1 194366530 6477249 complement(3075019..3076503) 1 NC_011071.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: xcv:XCV2605 hypothetical protein; carbohydrate kinase 3076503 6477249 Smal_2757 Stenotrophomonas maltophilia R551-3 carbohydrate kinase YP_002029140.1 3075019 R 391008 CDS YP_002029141.1 194366531 6477250 3076527..3077597 1 NC_011071.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: xcb:XC_1813 iron-sulfur cluster-binding protein; iron-sulfur cluster binding protein 3077597 6477250 Smal_2758 Stenotrophomonas maltophilia R551-3 iron-sulfur cluster binding protein YP_002029141.1 3076527 D 391008 CDS YP_002029142.1 194366532 6477251 3077642..3078973 1 NC_011071.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3078973 xseA 6477251 xseA Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease VII large subunit YP_002029142.1 3077642 D 391008 CDS YP_002029143.1 194366533 6477252 complement(3079512..3080408) 1 NC_011071.1 PFAM: peptidase M48 Ste24p; KEGG: gfo:GFO_1860 membrane or secreted peptidase, family M48; peptidase M48 Ste24p 3080408 6477252 Smal_2760 Stenotrophomonas maltophilia R551-3 peptidase M48 Ste24p YP_002029143.1 3079512 R 391008 CDS YP_002029144.1 194366534 6477253 complement(3080497..3082383) 1 NC_011071.1 PFAM: protein of unknown function DUF323; KEGG: xcv:XCV2610 hypothetical protein; hypothetical protein 3082383 6477253 Smal_2761 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029144.1 3080497 R 391008 CDS YP_002029145.1 194366535 6477254 3082468..3083544 1 NC_011071.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: xcb:XC_1809 ribonuclease D; ribonuclease D 3083544 6477254 Smal_2762 Stenotrophomonas maltophilia R551-3 ribonuclease D YP_002029145.1 3082468 D 391008 CDS YP_002029146.1 194366536 6477255 3083646..3084473 1 NC_011071.1 hypothetical protein 3084473 6477255 Smal_2763 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029146.1 3083646 D 391008 CDS YP_002029147.1 194366537 6477256 complement(3084563..3086893) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV1326 TonB-dependent outer membrane receptor; TonB-dependent receptor 3086893 6477256 Smal_2764 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029147.1 3084563 R 391008 CDS YP_002029148.1 194366538 6477257 complement(3087047..3087637) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B3093 transcriptional regulator, TetR family; TetR family transcriptional regulator 3087637 6477257 Smal_2765 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029148.1 3087047 R 391008 CDS YP_002029149.1 194366539 6477258 3087739..3088794 1 NC_011071.1 PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_B3092 xylose isomerase-like TIM barrel; Xylose isomerase domain-containing protein 3088794 6477258 Smal_2766 Stenotrophomonas maltophilia R551-3 Xylose isomerase domain-containing protein YP_002029149.1 3087739 D 391008 CDS YP_002029150.1 194366540 6477259 3088815..3089708 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: dac:Daci_3925 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 3089708 6477259 Smal_2767 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002029150.1 3088815 D 391008 CDS YP_002029151.1 194366541 6477260 3089698..3090624 1 NC_011071.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: spe:Spro_2542 alpha/beta hydrolase fold-3 domain protein; Alpha/beta hydrolase fold-3 domain-containing protein 3090624 6477260 Smal_2768 Stenotrophomonas maltophilia R551-3 Alpha/beta hydrolase fold-3 domain-containing protein YP_002029151.1 3089698 D 391008 CDS YP_002029152.1 194366542 6477262 complement(3090851..3091024) 1 NC_011071.1 KEGG: xcb:XC_1804 hypothetical protein; hypothetical protein 3091024 6477262 Smal_2769 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029152.1 3090851 R 391008 CDS YP_002029153.1 194366543 6477263 3091167..3091670 1 NC_011071.1 hypothetical protein 3091670 6477263 Smal_2770 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029153.1 3091167 D 391008 CDS YP_002029154.1 194366544 6477264 complement(3091677..3092438) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_4456 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3092438 6477264 Smal_2771 Stenotrophomonas maltophilia R551-3 short chain dehydrogenase YP_002029154.1 3091677 R 391008 CDS YP_002029155.1 194366545 6477265 3092472..3093413 1 NC_011071.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: reh:H16_B1093 methylated-DNA-[protein]-cysteine S-methyltransferase; AraC family transcriptional regulator 3093413 6477265 Smal_2772 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029155.1 3092472 D 391008 CDS YP_002029156.1 194366546 6477266 complement(3093493..3094518) 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV0295 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase zinc-binding domain-containing protein 3094518 6477266 Smal_2773 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase zinc-binding domain-containing protein YP_002029156.1 3093493 R 391008 CDS YP_002029157.1 194366547 6477269 3095177..3095752 1 NC_011071.1 KEGG: mxa:MXAN_0875 hypothetical protein; hypothetical protein 3095752 6477269 Smal_2774 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029157.1 3095177 D 391008 CDS YP_002029158.1 194366548 6477270 3095848..3096399 1 NC_011071.1 PFAM: Lipocalin family protein; KEGG: xcb:XC_1682 outer membrane lipoprotein; lipocalin family protein 3096399 6477270 Smal_2775 Stenotrophomonas maltophilia R551-3 lipocalin family protein YP_002029158.1 3095848 D 391008 CDS YP_002029159.1 194366549 6477271 3096562..3097038 1 NC_011071.1 KEGG: xcb:XC_1681 hypothetical protein; hypothetical protein 3097038 6477271 Smal_2776 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029159.1 3096562 D 391008 CDS YP_002029160.1 194366550 6477272 3097099..3098889 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC2563 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3098889 6477272 Smal_2777 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002029160.1 3097099 D 391008 CDS YP_002029161.1 194366551 6477273 3099287..3099952 1 NC_011071.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: xcb:XC_1679 hypothetical protein; HNH endonuclease 3099952 6477273 Smal_2778 Stenotrophomonas maltophilia R551-3 HNH endonuclease YP_002029161.1 3099287 D 391008 CDS YP_002029162.1 194366552 6477274 3100055..3101965 1 NC_011071.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3101965 6477274 Smal_2779 Stenotrophomonas maltophilia R551-3 1-deoxy-D-xylulose-5-phosphate synthase YP_002029162.1 3100055 D 391008 CDS YP_002029163.1 194366553 6477275 complement(3102037..3102240) 1 NC_011071.1 hypothetical protein 3102240 6477275 Smal_2780 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029163.1 3102037 R 391008 CDS YP_002029164.1 194366554 6477276 complement(3102407..3102967) 1 NC_011071.1 KEGG: xac:XAC3155 hypothetical protein; hypothetical protein 3102967 6477276 Smal_2781 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029164.1 3102407 R 391008 CDS YP_002029165.1 194366555 6477277 complement(3103101..3103304) 1 NC_011071.1 hypothetical protein 3103304 6477277 Smal_2782 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029165.1 3103101 R 391008 CDS YP_002029166.1 194366556 6477278 3103538..3103639 1 NC_011071.1 hypothetical protein 3103639 6477278 Smal_2783 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029166.1 3103538 D 391008 CDS YP_002029167.1 194366557 6477279 3103702..3103986 1 NC_011071.1 KEGG: bch:Bcen2424_3169 hypothetical protein; hypothetical protein 3103986 6477279 Smal_2784 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029167.1 3103702 D 391008 CDS YP_002029168.1 194366558 6477280 3103999..3104232 1 NC_011071.1 PFAM: protein of unknown function DUF1653; KEGG: xcb:XC_2583 hypothetical protein; hypothetical protein 3104232 6477280 Smal_2785 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029168.1 3103999 D 391008 CDS YP_002029169.1 194366559 6477281 3104318..3104890 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein; TetR family transcriptional regulator 3104890 6477281 Smal_2786 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029169.1 3104318 D 391008 CDS YP_002029170.1 194366560 6477282 3104904..3105236 1 NC_011071.1 PFAM: small multidrug resistance protein; KEGG: aav:Aave_4701 small multidrug resistance protein; small multidrug resistance protein 3105236 6477282 Smal_2787 Stenotrophomonas maltophilia R551-3 small multidrug resistance protein YP_002029170.1 3104904 D 391008 CDS YP_002029171.1 194366561 6477283 complement(3105259..3105432) 1 NC_011071.1 PFAM: protein of unknown function DUF1328; KEGG: xac:XAC1353 hypothetical protein; hypothetical protein 3105432 6477283 Smal_2788 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029171.1 3105259 R 391008 CDS YP_002029172.1 194366562 6477284 complement(3105527..3106168) 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A0048 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3106168 6477284 Smal_2789 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002029172.1 3105527 R 391008 CDS YP_002029173.1 194366563 6477285 complement(3106267..3106875) 1 NC_011071.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3106875 clpP 6477285 clpP Stenotrophomonas maltophilia R551-3 ATP-dependent Clp protease proteolytic subunit YP_002029173.1 3106267 R 391008 CDS YP_002029174.1 194366564 6477286 complement(3106913..3107263) 1 NC_011071.1 KEGG: sme:SMc03842 hypothetical protein; hypothetical protein 3107263 6477286 Smal_2791 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029174.1 3106913 R 391008 CDS YP_002029175.1 194366565 6477287 complement(3107263..3107574) 1 NC_011071.1 PFAM: regulatory protein ArsR; KEGG: dac:Daci_2050 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3107574 6477287 Smal_2792 Stenotrophomonas maltophilia R551-3 ArsR family transcriptional regulator YP_002029175.1 3107263 R 391008 CDS YP_002029176.1 194366566 6477288 3107661..3108353 1 NC_011071.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: cak:Caul_0902 aspartate racemase; aspartate racemase 3108353 6477288 Smal_2793 Stenotrophomonas maltophilia R551-3 aspartate racemase YP_002029176.1 3107661 D 391008 CDS YP_002029177.1 194366567 6477289 complement(3108378..3108773) 1 NC_011071.1 hypothetical protein 3108773 6477289 Smal_2794 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029177.1 3108378 R 391008 CDS YP_002029178.1 194366568 6477290 3109015..3109524 1 NC_011071.1 KEGG: xcb:XC_1127 hypothetical protein; hypothetical protein 3109524 6477290 Smal_2795 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029178.1 3109015 D 391008 CDS YP_002029179.1 194366569 6477291 3109611..3109964 1 NC_011071.1 KEGG: hch:HCH_04660 hypothetical protein; hypothetical protein 3109964 6477291 Smal_2796 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029179.1 3109611 D 391008 CDS YP_002029180.1 194366570 6477292 3109961..3110401 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1830 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3110401 6477292 Smal_2797 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029180.1 3109961 D 391008 CDS YP_002029181.1 194366571 6477294 complement(3110612..3110968) 1 NC_011071.1 PFAM: regulatory protein MerR; KEGG: xom:XOO_3020 hypothetical protein; MerR family transcriptional regulator 3110968 6477294 Smal_2798 Stenotrophomonas maltophilia R551-3 MerR family transcriptional regulator YP_002029181.1 3110612 R 391008 CDS YP_002029182.1 194366572 6477295 complement(3110949..3111248) 1 NC_011071.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3111248 ihfA 6477295 ihfA Stenotrophomonas maltophilia R551-3 integration host factor subunit alpha YP_002029182.1 3110949 R 391008 CDS YP_002029183.1 194366573 6477296 complement(3111276..3113684) 1 NC_011071.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 3113684 pheT 6477296 pheT Stenotrophomonas maltophilia R551-3 phenylalanyl-tRNA synthetase subunit beta YP_002029183.1 3111276 R 391008 CDS YP_002029184.1 194366574 6477297 complement(3113741..3114736) 1 NC_011071.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 3114736 pheS 6477297 pheS Stenotrophomonas maltophilia R551-3 phenylalanyl-tRNA synthetase subunit alpha YP_002029184.1 3113741 R 391008 CDS YP_002029185.1 194366575 6477298 complement(3114929..3115288) 1 NC_011071.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3115288 rplT 6477298 rplT Stenotrophomonas maltophilia R551-3 50S ribosomal protein L20 YP_002029185.1 3114929 R 391008 CDS YP_002029186.1 194366576 6477299 complement(3115300..3115497) 1 NC_011071.1 PFAM: ribosomal protein L35; KEGG: xom:XOO_3025 50S ribosomal protein L35; 50S ribosomal protein L35 3115497 rpmI 6477299 rpmI Stenotrophomonas maltophilia R551-3 50S ribosomal protein L35 YP_002029186.1 3115300 R 391008 CDS YP_002029187.1 194366577 6477300 complement(3115782..3116324) 1 NC_011071.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 3116324 infC 6477300 infC Stenotrophomonas maltophilia R551-3 translation initiation factor IF-3 YP_002029187.1 3115782 R 391008 CDS YP_002029188.1 194366578 6477301 complement(3116374..3118275) 1 NC_011071.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3118275 thrS 6477301 thrS Stenotrophomonas maltophilia R551-3 threonyl-tRNA synthetase YP_002029188.1 3116374 R 391008 CDS YP_002029189.1 194366579 6477302 3118705..3119001 1 NC_011071.1 KEGG: xcb:XC_0146 hypothetical protein; hypothetical protein 3119001 6477302 Smal_2806 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029189.1 3118705 D 391008 CDS YP_002029190.1 194366580 6477303 3119001..3119264 1 NC_011071.1 KEGG: xcb:XC_0147 hypothetical protein; hypothetical protein 3119264 6477303 Smal_2807 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029190.1 3119001 D 391008 CDS YP_002029191.1 194366581 6477304 3119275..3120834 1 NC_011071.1 PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_A1449 hypothetical protein; PepSY-associated TM helix domain-containing protein 3120834 6477304 Smal_2808 Stenotrophomonas maltophilia R551-3 PepSY-associated TM helix domain-containing protein YP_002029191.1 3119275 D 391008 CDS YP_002029192.1 194366582 6477305 complement(3120871..3122061) 1 NC_011071.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_0270 glycoside hydrolase, family 18; glycoside hydrolase family protein 3122061 6477305 Smal_2809 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family protein YP_002029192.1 3120871 R 391008 CDS YP_002029193.1 194366583 6477306 3122216..3123250 1 NC_011071.1 KEGG: dac:Daci_4219 hypothetical protein; hypothetical protein 3123250 6477306 Smal_2810 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029193.1 3122216 D 391008 CDS YP_002029194.1 194366584 6477307 complement(3123378..3125486) 1 NC_011071.1 KEGG: xcb:XC_1609 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3125486 6477307 Smal_2811 Stenotrophomonas maltophilia R551-3 polynucleotide phosphorylase/polyadenylase YP_002029194.1 3123378 R 391008 CDS YP_002029195.1 194366585 6477308 complement(3125638..3125898) 1 NC_011071.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3125898 rpsO 6477308 rpsO Stenotrophomonas maltophilia R551-3 30S ribosomal protein S15 YP_002029195.1 3125638 R 391008 CDS YP_002029196.1 194366586 6477309 complement(3126072..3126980) 1 NC_011071.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3126980 truB 6477309 truB Stenotrophomonas maltophilia R551-3 tRNA pseudouridine synthase B YP_002029196.1 3126072 R 391008 CDS YP_002029197.1 194366587 6477310 complement(3127090..3127473) 1 NC_011071.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3127473 rbfA 6477310 rbfA Stenotrophomonas maltophilia R551-3 ribosome-binding factor A YP_002029197.1 3127090 R 391008 CDS YP_002029198.1 194366588 6477311 complement(3127635..3130286) 1 NC_011071.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3130286 infB 6477311 infB Stenotrophomonas maltophilia R551-3 translation initiation factor IF-2 YP_002029198.1 3127635 R 391008 CDS YP_002029199.1 194366589 6477312 complement(3130379..3131890) 1 NC_011071.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3131890 nusA 6477312 nusA Stenotrophomonas maltophilia R551-3 transcription elongation factor NusA YP_002029199.1 3130379 R 391008 CDS YP_002029200.1 194366590 6477313 complement(3131895..3132485) 1 NC_011071.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3132485 6477313 Smal_2817 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029200.1 3131895 R 391008 CDS YP_002029201.1 194366591 6477316 complement(3133250..3134710) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 3134710 6477316 Smal_2818 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit N YP_002029201.1 3133250 R 391008 CDS YP_002029202.1 194366592 6477317 complement(3134726..3136234) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 3136234 6477317 Smal_2819 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit M YP_002029202.1 3134726 R 391008 CDS YP_002029203.1 194366593 6477318 complement(3136258..3138432) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 3138432 6477318 Smal_2820 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit L YP_002029203.1 3136258 R 391008 CDS YP_002029204.1 194366594 6477319 complement(3138440..3138745) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 3138745 6477319 Smal_2821 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit K YP_002029204.1 3138440 R 391008 CDS YP_002029205.1 194366595 6477320 complement(3138742..3139398) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 3139398 6477320 Smal_2822 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit J YP_002029205.1 3138742 R 391008 CDS YP_002029206.1 194366596 6477321 complement(3139408..3139896) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 3139896 6477321 Smal_2823 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit I YP_002029206.1 3139408 R 391008 CDS YP_002029207.1 194366597 6477322 complement(3139900..3140994) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 3140994 6477322 Smal_2824 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit H YP_002029207.1 3139900 R 391008 CDS YP_002029208.1 194366598 6477323 complement(3140991..3143225) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 3143225 6477323 Smal_2825 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit G YP_002029208.1 3140991 R 391008 CDS YP_002029209.1 194366599 6477324 complement(3143222..3144562) 1 NC_011071.1 KEGG: xcb:XC_1594 NADH-ubiquinone oxidoreductase NQO1 subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 3144562 6477324 Smal_2826 Stenotrophomonas maltophilia R551-3 NADH-quinone oxidoreductase subunit F YP_002029209.1 3143222 R 391008 CDS YP_002029210.1 194366600 6477325 complement(3144567..3145094) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 3145094 6477325 Smal_2827 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit E YP_002029210.1 3144567 R 391008 CDS YP_002029211.1 194366601 6477326 complement(3145192..3146499) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 3146499 6477326 Smal_2828 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit D YP_002029211.1 3145192 R 391008 CDS YP_002029212.1 194366602 6477327 complement(3146496..3147245) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 3147245 6477327 Smal_2829 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit C YP_002029212.1 3146496 R 391008 CDS YP_002029213.1 194366603 6477328 complement(3147279..3147833) 1 NC_011071.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 3147833 6477328 Smal_2830 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit B YP_002029213.1 3147279 R 391008 CDS YP_002029214.1 194366604 6477329 complement(3147824..3148228) 1 NC_011071.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 3148228 6477329 Smal_2831 Stenotrophomonas maltophilia R551-3 NADH dehydrogenase subunit A YP_002029214.1 3147824 R 391008 CDS YP_002029215.1 194366605 6477331 complement(3148428..3148865) 1 NC_011071.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: xom:XOO_3068 preprotein translocase subunit SecG; preprotein translocase subunit SecG 3148865 secG 6477331 secG Stenotrophomonas maltophilia R551-3 preprotein translocase subunit SecG YP_002029215.1 3148428 R 391008 CDS YP_002029216.1 194366606 6477332 complement(3148897..3149652) 1 NC_011071.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3149652 tpiA 6477332 tpiA Stenotrophomonas maltophilia R551-3 triosephosphate isomerase YP_002029216.1 3148897 R 391008 CDS YP_002029217.1 194366607 6477333 complement(3150531..3151466) 1 NC_011071.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: xcb:XC_1580 oxidoreductase; 2OG-Fe(II) oxygenase 3151466 6477333 Smal_2834 Stenotrophomonas maltophilia R551-3 2OG-Fe(II) oxygenase YP_002029217.1 3150531 R 391008 CDS YP_002029218.1 194366608 6477334 3151669..3153546 1 NC_011071.1 PFAM: sulfatase; KEGG: spc:Sputcn32_3889 sulfatase; sulfatase 3153546 6477334 Smal_2835 Stenotrophomonas maltophilia R551-3 sulfatase YP_002029218.1 3151669 D 391008 CDS YP_002029219.1 194366609 6477335 3153565..3154710 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: xfn:XfasM23_0723 glycosyl transferase group 1; group 1 glycosyl transferase 3154710 6477335 Smal_2836 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029219.1 3153565 D 391008 CDS YP_002029220.1 194366610 6477336 3154703..3155560 1 NC_011071.1 PFAM: polysaccharide deacetylase; KEGG: xfn:XfasM23_0722 polysaccharide deacetylase; polysaccharide deacetylase 3155560 6477336 Smal_2837 Stenotrophomonas maltophilia R551-3 polysaccharide deacetylase YP_002029220.1 3154703 D 391008 CDS YP_002029221.1 194366611 6477337 3155629..3156651 1 NC_011071.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; KEGG: xcb:XC_3767 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3156651 6477337 Smal_2838 Stenotrophomonas maltophilia R551-3 UDP-glucose 4-epimerase YP_002029221.1 3155629 D 391008 CDS YP_002029222.1 194366612 6477338 complement(3156872..3158233) 1 NC_011071.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3158233 glmM 6477338 glmM Stenotrophomonas maltophilia R551-3 phosphoglucosamine mutase YP_002029222.1 3156872 R 391008 CDS YP_002029223.1 194366613 6477339 complement(3158233..3159108) 1 NC_011071.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 3159108 6477339 Smal_2840 Stenotrophomonas maltophilia R551-3 acetyl-CoA carboxylase subunit beta YP_002029223.1 3158233 R 391008 CDS YP_002029224.1 194366614 6477340 complement(3159328..3160137) 1 NC_011071.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3160137 trpA 6477340 trpA Stenotrophomonas maltophilia R551-3 tryptophan synthase subunit alpha YP_002029224.1 3159328 R 391008 CDS YP_002029225.1 194366615 6477341 complement(3160139..3160819) 1 NC_011071.1 KEGG: xcb:XC_1576 hypothetical protein; hypothetical protein 3160819 6477341 Smal_2842 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029225.1 3160139 R 391008 CDS YP_002029226.1 194366616 6477342 complement(3160816..3162033) 1 NC_011071.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3162033 6477342 Smal_2843 Stenotrophomonas maltophilia R551-3 tryptophan synthase subunit beta YP_002029226.1 3160816 R 391008 CDS YP_002029227.1 194366617 6477343 3162131..3163018 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0102 transcriptional regulator, LysR family; LysR family transcriptional regulator 3163018 6477343 Smal_2844 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029227.1 3162131 D 391008 CDS YP_002029228.1 194366618 6477344 complement(3163096..3164205) 1 NC_011071.1 PFAM: toxic anion resistance family protein; KEGG: aci:ACIAD2252 putative tellurique resistant protein (KlaB/TelA); toxic anion resistance family protein 3164205 6477344 Smal_2845 Stenotrophomonas maltophilia R551-3 toxic anion resistance family protein YP_002029228.1 3163096 R 391008 CDS YP_002029229.1 194366619 6477345 complement(3164249..3164956) 1 NC_011071.1 KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY 3164956 6477345 Smal_2846 Stenotrophomonas maltophilia R551-3 signal recognition particle-docking protein FtsY YP_002029229.1 3164249 R 391008 CDS YP_002029230.1 194366620 6477346 complement(3164953..3170325) 1 NC_011071.1 KEGG: pap:PSPA7_1392 hypothetical protein; hypothetical protein 3170325 6477346 Smal_2847 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029230.1 3164953 R 391008 CDS YP_002029231.1 194366621 6477347 complement(3170411..3172429) 1 NC_011071.1 KEGG: pap:PSPA7_1390 hypothetical protein; hypothetical protein 3172429 6477347 Smal_2848 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029231.1 3170411 R 391008 CDS YP_002029232.1 194366622 6477348 complement(3172426..3173100) 1 NC_011071.1 KEGG: pfl:PFL_1113 hypothetical protein; hypothetical protein 3173100 6477348 Smal_2849 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029232.1 3172426 R 391008 CDS YP_002029233.1 194366623 6477349 complement(3173268..3173924) 1 NC_011071.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 3173924 6477349 Smal_2850 Stenotrophomonas maltophilia R551-3 N-(5'-phosphoribosyl)anthranilate isomerase YP_002029233.1 3173268 R 391008 CDS YP_002029234.1 194366624 6477350 complement(3173921..3174691) 1 NC_011071.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3174691 truA 6477350 truA Stenotrophomonas maltophilia R551-3 tRNA pseudouridine synthase A YP_002029234.1 3173921 R 391008 CDS YP_002029235.1 194366625 6477351 complement(3174724..3175086) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC2721 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3175086 6477351 Smal_2852 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029235.1 3174724 R 391008 CDS YP_002029236.1 194366626 6477352 complement(3175113..3177152) 1 NC_011071.1 KEGG: xcv:XCV2874 hypothetical protein; hypothetical protein 3177152 6477352 Smal_2853 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029236.1 3175113 R 391008 CDS YP_002029237.1 194366627 6477353 complement(3177325..3178353) 1 NC_011071.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3178353 6477353 Smal_2854 Stenotrophomonas maltophilia R551-3 aspartate-semialdehyde dehydrogenase YP_002029237.1 3177325 R 391008 CDS YP_002029238.1 194366628 6477354 complement(3178446..3179483) 1 NC_011071.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: xcv:XCV2876 2-hydroxyacid dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 3179483 6477354 Smal_2855 Stenotrophomonas maltophilia R551-3 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_002029238.1 3178446 R 391008 CDS YP_002029239.1 194366629 6477355 complement(3179476..3180579) 1 NC_011071.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3180579 6477355 Smal_2856 Stenotrophomonas maltophilia R551-3 chorismate synthase YP_002029239.1 3179476 R 391008 CDS YP_002029240.1 194366630 6477356 complement(3180576..3181505) 1 NC_011071.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 3181505 6477356 Smal_2857 Stenotrophomonas maltophilia R551-3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002029240.1 3180576 R 391008 CDS YP_002029241.1 194366631 6477357 3181628..3182278 1 NC_011071.1 PFAM: electron transport protein SCO1/SenC; KEGG: xcv:XCV2879 putative SCO1/SenC family protein; electron transport protein SCO1/SenC 3182278 6477357 Smal_2858 Stenotrophomonas maltophilia R551-3 electron transport protein SCO1/SenC YP_002029241.1 3181628 D 391008 CDS YP_002029242.1 194366632 6477358 3182275..3183117 1 NC_011071.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3183117 psd 6477358 psd Stenotrophomonas maltophilia R551-3 phosphatidylserine decarboxylase YP_002029242.1 3182275 D 391008 CDS YP_002029243.1 194366633 6477359 complement(3183229..3183576) 1 NC_011071.1 PFAM: protein of unknown function DUF1260; KEGG: shn:Shewana3_2238 hypothetical protein; hypothetical protein 3183576 6477359 Smal_2860 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029243.1 3183229 R 391008 CDS YP_002029244.1 194366634 6477360 complement(3183601..3185205) 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: xcv:XCV2881 lytic mureine transglycosylase precursor; Lytic transglycosylase 3185205 6477360 Smal_2861 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002029244.1 3183601 R 391008 CDS YP_002029245.1 194366635 6477361 3185328..3186833 1 NC_011071.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: xcb:XC_1560 hypothetical protein; hypothetical protein 3186833 6477361 Smal_2862 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029245.1 3185328 D 391008 CDS YP_002029246.1 194366636 6477362 3186923..3187429 1 NC_011071.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3187429 greB 6477362 greB Stenotrophomonas maltophilia R551-3 transcription elongation factor GreB YP_002029246.1 3186923 D 391008 CDS YP_002029247.1 194366637 6477363 complement(3187517..3188353) 1 NC_011071.1 KEGG: cvi:CV_0811 probable putative transmembrane protein; putative putative transmembrane protein 3188353 6477363 Smal_2864 Stenotrophomonas maltophilia R551-3 putative putative transmembrane protein YP_002029247.1 3187517 R 391008 CDS YP_002029248.1 194366638 6477364 complement(3188350..3189711) 1 NC_011071.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 3189711 rimO 6477364 rimO Stenotrophomonas maltophilia R551-3 30S ribosomal protein S12 methylthiotransferase YP_002029248.1 3188350 R 391008 CDS YP_002029249.1 194366639 6477365 3189915..3190586 1 NC_011071.1 PFAM: dienelactone hydrolase; KEGG: xcv:XCV2888 putative dienelactone hydrolase; dienelactone hydrolase 3190586 6477365 Smal_2866 Stenotrophomonas maltophilia R551-3 dienelactone hydrolase YP_002029249.1 3189915 D 391008 CDS YP_002029250.1 194366640 6477366 3190583..3191005 1 NC_011071.1 PFAM: histidine triad (HIT) protein; KEGG: xcv:XCV2889 hypothetical protein; histidine triad (HIT) protein 3191005 6477366 Smal_2867 Stenotrophomonas maltophilia R551-3 histidine triad (HIT) protein YP_002029250.1 3190583 D 391008 CDS YP_002029251.1 194366641 6477367 3191020..3191187 1 NC_011071.1 KEGG: xcb:XC_1550 hypothetical protein; hypothetical protein 3191187 6477367 Smal_2868 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029251.1 3191020 D 391008 CDS YP_002029252.1 194366642 6477368 complement(3191286..3191858) 1 NC_011071.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 3191858 dcd 6477368 dcd Stenotrophomonas maltophilia R551-3 deoxycytidine triphosphate deaminase YP_002029252.1 3191286 R 391008 CDS YP_002029253.1 194366643 6477369 complement(3191937..3192791) 1 NC_011071.1 KEGG: xcb:XC_1547 hypothetical protein; hypothetical protein 3192791 6477369 Smal_2870 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029253.1 3191937 R 391008 CDS YP_002029254.1 194366644 6477370 3193005..3195812 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xom:XOO_4140 hypothetical protein; TonB-dependent receptor 3195812 6477370 Smal_2871 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029254.1 3193005 D 391008 CDS YP_002029255.1 194366645 6477371 3196206..3199154 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1099 TonB-dependent receptor; TonB-dependent receptor 3199154 6477371 Smal_2872 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029255.1 3196206 D 391008 CDS YP_002029256.1 194366646 6477372 3199251..3201284 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: saz:Sama_2025 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 3201284 6477372 Smal_2873 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002029256.1 3199251 D 391008 CDS YP_002029257.1 194366647 6477373 3201353..3203557 1 NC_011071.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcv:XCV2898 metallopeptidase; endothelin-converting enzyme 1 3203557 6477373 Smal_2874 Stenotrophomonas maltophilia R551-3 endothelin-converting enzyme 1 YP_002029257.1 3201353 D 391008 CDS YP_002029258.1 194366648 6477374 3203761..3205767 1 NC_011071.1 PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcb:XC_1542 metallopeptidase; neprilysin 3205767 6477374 Smal_2875 Stenotrophomonas maltophilia R551-3 neprilysin YP_002029258.1 3203761 D 391008 CDS YP_002029259.1 194366649 6477375 complement(3205907..3208930) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1545 Oar protein; TonB-dependent receptor 3208930 6477375 Smal_2876 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029259.1 3205907 R 391008 CDS YP_002029260.1 194366650 6477376 3209248..3209742 1 NC_011071.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rso:RS03882 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 3209742 6477376 Smal_2877 Stenotrophomonas maltophilia R551-3 3-demethylubiquinone-9 3-methyltransferase YP_002029260.1 3209248 D 391008 CDS YP_002029261.1 194366651 6477377 3209818..3211401 1 NC_011071.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xac:XAC2744 phytoene dehydrogenase; amine oxidase 3211401 6477377 Smal_2878 Stenotrophomonas maltophilia R551-3 amine oxidase YP_002029261.1 3209818 D 391008 CDS YP_002029262.1 194366652 6477378 complement(3211631..3212305) 1 NC_011071.1 PFAM: Rhomboid family protein; KEGG: xcb:XC_1541 integral membrane protein; rhomboid family protein 3212305 6477378 Smal_2879 Stenotrophomonas maltophilia R551-3 rhomboid family protein YP_002029262.1 3211631 R 391008 CDS YP_002029263.1 194366653 6477379 complement(3212399..3212701) 1 NC_011071.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: xac:XAC2749 methylated-DNA-protein-cysteine S-methyltransferase related protein; methylated-DNA--protein-cysteine methyltransferase 3212701 6477379 Smal_2880 Stenotrophomonas maltophilia R551-3 methylated-DNA--protein-cysteine methyltransferase YP_002029263.1 3212399 R 391008 CDS YP_002029264.1 194366654 6477380 complement(3212734..3213654) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: pna:Pnap_3236 protein of unknown function DUF6, transmembrane; hypothetical protein 3213654 6477380 Smal_2881 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029264.1 3212734 R 391008 CDS YP_002029265.1 194366655 6477381 3214038..3215003 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 3215003 6477381 Smal_2882 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002029265.1 3214038 D 391008 CDS YP_002029266.1 194366656 6477382 complement(3215037..3216395) 1 NC_011071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: xcc:XCC2579 reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation protein 3216395 6477382 Smal_2883 Stenotrophomonas maltophilia R551-3 pyridine nucleotide-disulfide oxidoreductase dimerisation protein YP_002029266.1 3215037 R 391008 CDS YP_002029267.1 194366657 6477384 complement(3216611..3217855) 1 NC_011071.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: xac:XAC2752 transport protein; hypothetical protein 3217855 6477384 Smal_2885 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029267.1 3216611 R 391008 CDS YP_002029268.1 194366658 6477385 complement(3217955..3218437) 1 NC_011071.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: xcb:XC_1536 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 3218437 6477385 Smal_2886 Stenotrophomonas maltophilia R551-3 FKBP-type peptidylprolyl isomerase YP_002029268.1 3217955 R 391008 CDS YP_002029269.1 194366659 6477386 3218549..3219088 1 NC_011071.1 PFAM: NLP/P60 protein; KEGG: xcb:XC_1535 lipoprotein; NLP/P60 protein 3219088 6477386 Smal_2887 Stenotrophomonas maltophilia R551-3 NLP/P60 protein YP_002029269.1 3218549 D 391008 CDS YP_002029270.1 194366660 6477387 3219288..3219992 1 NC_011071.1 PFAM: NLP/P60 protein; KEGG: xcb:XC_1534 hypothetical protein; NLP/P60 protein 3219992 6477387 Smal_2888 Stenotrophomonas maltophilia R551-3 NLP/P60 protein YP_002029270.1 3219288 D 391008 CDS YP_002029271.1 194366661 6477388 complement(3220353..3221687) 1 NC_011071.1 PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC2758 glutamate symport protein; sodium:dicarboxylate symporter 3221687 6477388 Smal_2889 Stenotrophomonas maltophilia R551-3 sodium:dicarboxylate symporter YP_002029271.1 3220353 R 391008 CDS YP_002029272.1 194366662 6477389 3221842..3223548 1 NC_011071.1 PFAM: Alkaline phosphatase; KEGG: xcb:XC_1519 alkaline phosphatase; alkaline phosphatase 3223548 6477389 Smal_2890 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002029272.1 3221842 D 391008 CDS YP_002029273.1 194366663 6477390 3223548..3224090 1 NC_011071.1 KEGG: lbi:LEPBI_I3169 hypothetical protein; putative signal peptide; hypothetical protein 3224090 6477390 Smal_2891 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029273.1 3223548 D 391008 CDS YP_002029274.1 194366664 6477391 3224481..3225911 1 NC_011071.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: xcb:XC_1518 cell cycle protein; tRNA(Ile)-lysidine synthetase 3225911 6477391 Smal_2892 Stenotrophomonas maltophilia R551-3 tRNA(Ile)-lysidine synthetase YP_002029274.1 3224481 D 391008 CDS YP_002029275.1 194366665 6477392 3225948..3226208 1 NC_011071.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 3226208 6477392 Smal_2893 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease VII small subunit YP_002029275.1 3225948 D 391008 CDS YP_002029276.1 194366666 6477393 3226198..3227076 1 NC_011071.1 PFAM: Polyprenyl synthetase; KEGG: xcb:XC_1516 geranyltranstransferase; farnesyl-diphosphate synthase; polyprenyl synthetase 3227076 6477393 Smal_2894 Stenotrophomonas maltophilia R551-3 polyprenyl synthetase YP_002029276.1 3226198 D 391008 CDS YP_002029277.1 194366667 6477394 complement(3227187..3227558) 1 NC_011071.1 KEGG: xcb:XC_1513 hypothetical protein; hypothetical protein 3227558 6477394 Smal_2895 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029277.1 3227187 R 391008 CDS YP_002029278.1 194366668 6477395 complement(3227646..3229013) 1 NC_011071.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcb:XC_1512 PmbA protein; peptidase U62 modulator of DNA gyrase 3229013 6477395 Smal_2896 Stenotrophomonas maltophilia R551-3 peptidase U62 modulator of DNA gyrase YP_002029278.1 3227646 R 391008 CDS YP_002029279.1 194366669 6475643 3229082..3229672 1 NC_011071.1 PFAM: protein of unknown function DUF615; KEGG: xcb:XC_1511 hypothetical protein; hypothetical protein 3229672 6475643 Smal_2897 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029279.1 3229082 D 391008 CDS YP_002029280.1 194366670 6475644 complement(3229714..3231159) 1 NC_011071.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV2923 putative modulator of DNA gyrase TldD; peptidase U62 modulator of DNA gyrase 3231159 6475644 Smal_2898 Stenotrophomonas maltophilia R551-3 peptidase U62 modulator of DNA gyrase YP_002029280.1 3229714 R 391008 CDS YP_002029281.1 194366671 6475645 complement(3231219..3235070) 1 NC_011071.1 KEGG: xcb:XC_1508 hypothetical protein; hypothetical protein 3235070 6475645 Smal_2899 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029281.1 3231219 R 391008 CDS YP_002029282.1 194366672 6475646 complement(3235101..3236588) 1 NC_011071.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: xcb:XC_1507 ribonuclease G; ribonuclease, Rne/Rng family 3236588 6475646 Smal_2900 Stenotrophomonas maltophilia R551-3 ribonuclease, Rne/Rng family YP_002029282.1 3235101 R 391008 CDS YP_002029283.1 194366673 6475647 complement(3236581..3237189) 1 NC_011071.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: xcb:XC_1506 Maf-like protein; maf protein 3237189 6475647 Smal_2901 Stenotrophomonas maltophilia R551-3 maf protein YP_002029283.1 3236581 R 391008 CDS YP_002029284.1 194366674 6475648 3237319..3238056 1 NC_011071.1 PFAM: protein of unknown function DUF541; KEGG: xcv:XCV2929 putative outer membrane protein; hypothetical protein 3238056 6475648 Smal_2902 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029284.1 3237319 D 391008 CDS YP_002029285.1 194366675 6475649 3238274..3238930 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC2774 TonB-like protein; TonB family protein 3238930 6475649 Smal_2903 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002029285.1 3238274 D 391008 CDS YP_002029286.1 194366676 6475650 3239131..3241965 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfn:XfasM23_1806 TonB-dependent receptor; TonB-dependent receptor 3241965 6475650 Smal_2904 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029286.1 3239131 D 391008 CDS YP_002029287.1 194366677 6475651 3242104..3243525 1 NC_011071.1 TIGRFAM: arginine/ornithine antiporter; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: ppw:PputW619_4221 arginine/ornithine antiporter; arginine/ornithine antiporter 3243525 6475651 Smal_2905 Stenotrophomonas maltophilia R551-3 arginine/ornithine antiporter YP_002029287.1 3242104 D 391008 CDS YP_002029288.1 194366678 6475652 complement(3243609..3244568) 1 NC_011071.1 KEGG: xcb:XC_1120 xylanase; xylanase 3244568 6475652 Smal_2906 Stenotrophomonas maltophilia R551-3 xylanase YP_002029288.1 3243609 R 391008 CDS YP_002029289.1 194366679 6475654 complement(3244759..3245229) 1 NC_011071.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3245229 6475654 Smal_2907 Stenotrophomonas maltophilia R551-3 rRNA large subunit methyltransferase YP_002029289.1 3244759 R 391008 CDS YP_002029290.1 194366680 6475655 complement(3245294..3245707) 1 NC_011071.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: xac:XAC2777 hypothetical protein; iojap family protein 3245707 6475655 Smal_2908 Stenotrophomonas maltophilia R551-3 iojap family protein YP_002029290.1 3245294 R 391008 CDS YP_002029291.1 194366681 6475656 complement(3245766..3246431) 1 NC_011071.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 3246431 nadD 6475656 nadD Stenotrophomonas maltophilia R551-3 nicotinic acid mononucleotide adenylyltransferase YP_002029291.1 3245766 R 391008 CDS YP_002029292.1 194366682 6475657 complement(3246436..3247473) 1 NC_011071.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3247473 holA 6475657 holA Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit delta YP_002029292.1 3246436 R 391008 CDS YP_002029293.1 194366683 6475658 complement(3247483..3248067) 1 NC_011071.1 PFAM: Rare lipoprotein B; KEGG: xcv:XCV2936 rare lipoprotein B; Rare lipoprotein B 3248067 6475658 Smal_2911 Stenotrophomonas maltophilia R551-3 Rare lipoprotein B YP_002029293.1 3247483 R 391008 CDS YP_002029294.1 194366684 6475659 complement(3248204..3250846) 1 NC_011071.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3250846 leuS 6475659 leuS Stenotrophomonas maltophilia R551-3 leucyl-tRNA synthetase YP_002029294.1 3248204 R 391008 CDS YP_002029295.1 194366685 6475660 complement(3250952..3251548) 1 NC_011071.1 KEGG: xom:XOO_3143 hypothetical protein; hypothetical protein 3251548 6475660 Smal_2913 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029295.1 3250952 R 391008 CDS YP_002029296.1 194366686 6475661 3251673..3252530 1 NC_011071.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcb:XC_1495 thioredoxin; thioredoxin 3252530 6475661 Smal_2914 Stenotrophomonas maltophilia R551-3 thioredoxin YP_002029296.1 3251673 D 391008 CDS YP_002029297.1 194366687 6475662 3252638..3254338 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; KEGG: eba:ebA2921 hypothetical protein; peptidoglycan-binding LysM 3254338 6475662 Smal_2915 Stenotrophomonas maltophilia R551-3 peptidoglycan-binding LysM YP_002029297.1 3252638 D 391008 CDS YP_002029298.1 194366688 6475663 3254335..3255966 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE2 domain protein; KEGG: cvi:CV_3192 probable two component sensor; diguanylate cyclase with Chase2 sensor 3255966 6475663 Smal_2916 Stenotrophomonas maltophilia R551-3 diguanylate cyclase with Chase2 sensor YP_002029298.1 3254335 D 391008 CDS YP_002029299.1 194366689 6475664 3256041..3256493 1 NC_011071.1 KEGG: xac:XAC2784 hypothetical protein; hypothetical protein 3256493 6475664 Smal_2917 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029299.1 3256041 D 391008 CDS YP_002029300.1 194366690 6475665 3256541..3257257 1 NC_011071.1 KEGG: xcb:XC_3191 hypothetical protein; hypothetical protein 3257257 6475665 Smal_2918 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029300.1 3256541 D 391008 CDS YP_002029301.1 194366691 6475666 complement(3257266..3258579) 1 NC_011071.1 KEGG: xac:XAC1396 hypothetical protein; hypothetical protein 3258579 6475666 Smal_2919 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029301.1 3257266 R 391008 CDS YP_002029302.1 194366692 6475667 3258656..3259339 1 NC_011071.1 PFAM: protein of unknown function DUF502; KEGG: xcb:XC_2891 hypothetical protein; hypothetical protein 3259339 6475667 Smal_2920 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029302.1 3258656 D 391008 CDS YP_002029303.1 194366693 6475668 3259336..3260121 1 NC_011071.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: xcb:XC_2892 hypothetical protein; hypothetical protein 3260121 6475668 Smal_2921 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029303.1 3259336 D 391008 CDS YP_002029304.1 194366694 6475669 3260217..3262157 1 NC_011071.1 PFAM: protein of unknown function DUF885; KEGG: xcv:XCV1450 putative secreted protein; hypothetical protein 3262157 6475669 Smal_2922 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029304.1 3260217 D 391008 CDS YP_002029305.1 194366695 6475670 3262171..3263241 1 NC_011071.1 PFAM: beta-lactamase; KEGG: rca:Rcas_0939 beta-lactamase; beta-lactamase 3263241 6475670 Smal_2923 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002029305.1 3262171 D 391008 CDS YP_002029306.1 194366696 6475671 3263238..3263642 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC1390 glyoxylase I family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3263642 6475671 Smal_2924 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029306.1 3263238 D 391008 CDS YP_002029307.1 194366697 6475672 3264044..3264487 1 NC_011071.1 KEGG: xac:XAC1387 hypothetical protein; hypothetical protein 3264487 6475672 Smal_2925 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029307.1 3264044 D 391008 CDS YP_002029308.1 194366698 6475673 3264591..3266672 1 NC_011071.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3266672 metG 6475673 metG Stenotrophomonas maltophilia R551-3 methionyl-tRNA synthetase YP_002029308.1 3264591 D 391008 CDS YP_002029309.1 194366699 6475674 3266751..3267341 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: xcb:XC_2901 phosphotransferase; HAD-superfamily hydrolase 3267341 6475674 Smal_2927 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002029309.1 3266751 D 391008 CDS YP_002029310.1 194366700 6475675 3267367..3267780 1 NC_011071.1 Involved in the electron transport chain; ferredoxin 3267780 6475675 Smal_2928 Stenotrophomonas maltophilia R551-3 ferredoxin YP_002029310.1 3267367 D 391008 CDS YP_002029311.1 194366701 6475676 complement(3267982..3268329) 1 NC_011071.1 PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_2914 hypothetical protein; endoribonuclease L-PSP 3268329 6475676 Smal_2929 Stenotrophomonas maltophilia R551-3 endoribonuclease L-PSP YP_002029311.1 3267982 R 391008 CDS YP_002029312.1 194366702 6475677 3268522..3271086 1 NC_011071.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: xcb:XC_2916 hypothetical protein; hypothetical protein 3271086 6475677 Smal_2930 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029312.1 3268522 D 391008 CDS YP_002029313.1 194366703 6475678 complement(3271207..3272526) 1 NC_011071.1 PFAM: virulence factor family protein; KEGG: xcb:XC_2917 virulence protein; virulence factor family protein 3272526 6475678 Smal_2931 Stenotrophomonas maltophilia R551-3 virulence factor family protein YP_002029313.1 3271207 R 391008 CDS YP_002029314.1 194366704 6475679 complement(3272632..3273249) 1 NC_011071.1 KEGG: xcv:XCV1426 hypothetical protein; hypothetical protein 3273249 6475679 Smal_2932 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029314.1 3272632 R 391008 CDS YP_002029315.1 194366705 6475680 complement(3273246..3273434) 1 NC_011071.1 KEGG: xcv:XCV1423 hypothetical protein; hypothetical protein 3273434 6475680 Smal_2933 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029315.1 3273246 R 391008 CDS YP_002029316.1 194366706 6475681 complement(3273469..3274071) 1 NC_011071.1 KEGG: xcb:XC_2919 hypothetical protein; hypothetical protein 3274071 6475681 Smal_2934 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029316.1 3273469 R 391008 CDS YP_002029317.1 194366707 6475682 3274301..3275452 1 NC_011071.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_2703 TPR domain protein; hypothetical protein 3275452 6475682 Smal_2935 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029317.1 3274301 D 391008 CDS YP_002029318.1 194366708 6475683 complement(3275460..3275795) 1 NC_011071.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: xcb:XC_2927 hypothetical protein; alkylphosphonate utilization operon protein PhnA 3275795 6475683 Smal_2936 Stenotrophomonas maltophilia R551-3 alkylphosphonate utilization operon protein PhnA YP_002029318.1 3275460 R 391008 CDS YP_002029319.1 194366709 6475684 3275976..3277337 1 NC_011071.1 KEGG: xac:XAC1357 heat shock protein; heat shock protein 3277337 6475684 Smal_2937 Stenotrophomonas maltophilia R551-3 heat shock protein YP_002029319.1 3275976 D 391008 CDS YP_002029320.1 194366710 6475685 3277457..3277861 1 NC_011071.1 PFAM: protein of unknown function UPF0153; KEGG: dar:Daro_1958 hypothetical protein; hypothetical protein 3277861 6475685 Smal_2938 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029320.1 3277457 D 391008 CDS YP_002029321.1 194366711 6475686 3277873..3278055 1 NC_011071.1 hypothetical protein 3278055 6475686 Smal_2939 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029321.1 3277873 D 391008 CDS YP_002029322.1 194366712 6475687 complement(3278105..3278986) 1 NC_011071.1 KEGG: xcb:XC_2932 hypothetical protein; hypothetical protein 3278986 6475687 Smal_2940 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029322.1 3278105 R 391008 CDS YP_002029323.1 194366713 6475688 complement(3278999..3279532) 1 NC_011071.1 KEGG: xcb:XC_2933 hypothetical protein; hypothetical protein 3279532 6475688 Smal_2941 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029323.1 3278999 R 391008 CDS YP_002029324.1 194366714 6475689 complement(3279529..3280107) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcb:XC_2934 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 3280107 6475689 Smal_2942 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002029324.1 3279529 R 391008 CDS YP_002029325.1 194366715 6475690 3280233..3280412 1 NC_011071.1 hypothetical protein 3280412 6475690 Smal_2943 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029325.1 3280233 D 391008 CDS YP_002029326.1 194366716 6475691 3280448..3281041 1 NC_011071.1 KEGG: azo:azo0051 hypothetical protein; hypothetical protein 3281041 6475691 Smal_2944 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029326.1 3280448 D 391008 CDS YP_002029327.1 194366717 6475692 complement(3281482..3282315) 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit 3282315 6475692 Smal_2945 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002029327.1 3281482 R 391008 CDS YP_002029328.1 194366718 6475693 complement(3282312..3282833) 1 NC_011071.1 PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein 3282833 6475693 Smal_2946 Stenotrophomonas maltophilia R551-3 transposase IS3/IS911 family protein YP_002029328.1 3282312 R 391008 CDS YP_002029329.1 194366719 6475694 complement(3283005..3283271) 1 NC_011071.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: xac:XAC1355 hypothetical protein; hypothetical protein 3283271 6475694 Smal_2947 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029329.1 3283005 R 391008 CDS YP_002029330.1 194366720 6475695 complement(3283432..3283989) 1 NC_011071.1 KEGG: xom:XOO_3584 hypothetical protein; hypothetical protein 3283989 6475695 Smal_2948 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029330.1 3283432 R 391008 CDS YP_002029331.1 194366721 6475696 3284051..3284551 1 NC_011071.1 PFAM: protein of unknown function DUF45; KEGG: xcv:XCV1405 hypothetical protein; hypothetical protein 3284551 6475696 Smal_2949 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029331.1 3284051 D 391008 CDS YP_002029332.1 194366722 6475697 3284599..3285297 1 NC_011071.1 PFAM: RNA-binding S4 domain protein; KEGG: xcb:XC_1158 pseudouridylate synthase; RNA-binding S4 domain-containing protein 3285297 6475697 Smal_2950 Stenotrophomonas maltophilia R551-3 RNA-binding S4 domain-containing protein YP_002029332.1 3284599 D 391008 CDS YP_002029333.1 194366723 6475698 3285446..3287035 1 NC_011071.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: xac:XAC2871 cardiolipin synthase; phospholipase D/transphosphatidylase 3287035 6475698 Smal_2951 Stenotrophomonas maltophilia R551-3 phospholipase D/transphosphatidylase YP_002029333.1 3285446 D 391008 CDS YP_002029334.1 194366724 6475699 complement(3287039..3288115) 1 NC_011071.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: xcv:XCV0072 putative secreted protein; putative signal transduction protein 3288115 6475699 Smal_2952 Stenotrophomonas maltophilia R551-3 putative signal transduction protein YP_002029334.1 3287039 R 391008 CDS YP_002029335.1 194366725 6475700 3288394..3289491 1 NC_011071.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: xac:XAC1350 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 3289491 6475700 Smal_2953 Stenotrophomonas maltophilia R551-3 Glu/Leu/Phe/Val dehydrogenase YP_002029335.1 3288394 D 391008 CDS YP_002029336.1 194366726 6475701 complement(3289536..3292379) 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: xcb:XC_2942 serine protease; autotransporter-associated beta strand repeat-containing protein 3292379 6475701 Smal_2954 Stenotrophomonas maltophilia R551-3 autotransporter-associated beta strand repeat-containing protein YP_002029336.1 3289536 R 391008 CDS YP_002029337.1 194366727 6475702 3292563..3293738 1 NC_011071.1 KEGG: xcv:XCV1401 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3293738 6475702 Smal_2955 Stenotrophomonas maltophilia R551-3 acetyl-CoA acetyltransferase YP_002029337.1 3292563 D 391008 CDS YP_002029338.1 194366728 6475703 3293863..3294204 1 NC_011071.1 KEGG: xcc:XCC1296 outer membrane protein; outer membrane protein 3294204 6475703 Smal_2956 Stenotrophomonas maltophilia R551-3 outer membrane protein YP_002029338.1 3293863 D 391008 CDS YP_002029339.1 194366729 6475704 3294362..3294772 1 NC_011071.1 KEGG: xcb:XC_2945 hypothetical protein; hypothetical protein 3294772 6475704 Smal_2957 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029339.1 3294362 D 391008 CDS YP_002029340.1 194366730 6475705 complement(3295079..3296716) 1 NC_011071.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: psa:PST_3754 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3296716 6475705 Smal_2958 Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase domain-containing protein YP_002029340.1 3295079 R 391008 CDS YP_002029341.1 194366731 6475706 3296830..3297828 1 NC_011071.1 KEGG: xac:XAC1342 mRNA 3'-end processing factor; mRNA 3'-end processing factor 3297828 6475706 Smal_2959 Stenotrophomonas maltophilia R551-3 mRNA 3'-end processing factor YP_002029341.1 3296830 D 391008 CDS YP_002029342.1 194366732 6475707 3297825..3299432 1 NC_011071.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 3299432 6475707 Smal_2960 Stenotrophomonas maltophilia R551-3 ATP-dependent DNA ligase YP_002029342.1 3297825 D 391008 CDS YP_002029343.1 194366733 6475708 3299429..3301888 1 NC_011071.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV1393 ATP-dependent helicase; DEAD/DEAH box helicase 3301888 6475708 Smal_2961 Stenotrophomonas maltophilia R551-3 DEAD/DEAH box helicase YP_002029343.1 3299429 D 391008 CDS YP_002029344.1 194366734 6475709 3301878..3302519 1 NC_011071.1 PFAM: metallophosphoesterase; KEGG: xcv:XCV1392 putative phosphoesterase; metallophosphoesterase 3302519 6475709 Smal_2962 Stenotrophomonas maltophilia R551-3 metallophosphoesterase YP_002029344.1 3301878 D 391008 CDS YP_002029345.1 194366735 6475710 complement(3302521..3302790) 1 NC_011071.1 hypothetical protein 3302790 6475710 Smal_2963 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029345.1 3302521 R 391008 CDS YP_002029346.1 194366736 6475711 complement(3302973..3304241) 1 NC_011071.1 PFAM: monooxygenase FAD-binding; KEGG: xcb:XC_2954 oxidoreductase; monooxygenase FAD-binding 3304241 6475711 Smal_2964 Stenotrophomonas maltophilia R551-3 monooxygenase FAD-binding YP_002029346.1 3302973 R 391008 CDS YP_002029347.1 194366737 6475712 complement(3304344..3304550) 1 NC_011071.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xom:XOO_1765 cold shock protein; cold-shock DNA-binding domain-containing protein 3304550 6475712 Smal_2965 Stenotrophomonas maltophilia R551-3 cold-shock DNA-binding domain-containing protein YP_002029347.1 3304344 R 391008 CDS YP_002029348.1 194366738 6475713 complement(3304639..3305385) 1 NC_011071.1 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase 3305385 6475713 Smal_2966 Stenotrophomonas maltophilia R551-3 5'-methylthioadenosine phosphorylase YP_002029348.1 3304639 R 391008 CDS YP_002029349.1 194366739 6475714 complement(3305468..3306022) 1 NC_011071.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 3306022 6475714 Smal_2967 Stenotrophomonas maltophilia R551-3 hypoxanthine-guanine phosphoribosyltransferase YP_002029349.1 3305468 R 391008 CDS YP_002029350.1 194366740 6475715 complement(3306022..3307029) 1 NC_011071.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 3307029 6475715 Smal_2968 Stenotrophomonas maltophilia R551-3 beta-hexosaminidase YP_002029350.1 3306022 R 391008 CDS YP_002029351.1 194366741 6475716 complement(3307193..3307888) 1 NC_011071.1 PFAM: DSBA oxidoreductase; KEGG: xac:XAC1331 polyketide synthase; DSBA oxidoreductase 3307888 6475716 Smal_2969 Stenotrophomonas maltophilia R551-3 DSBA oxidoreductase YP_002029351.1 3307193 R 391008 CDS YP_002029352.1 194366742 6475717 complement(3308002..3308511) 1 NC_011071.1 PFAM: adenylate cyclase; KEGG: xcb:XC_2962 hypothetical protein; adenylate cyclase 3308511 6475717 Smal_2970 Stenotrophomonas maltophilia R551-3 adenylate cyclase YP_002029352.1 3308002 R 391008 CDS YP_002029353.1 194366743 6475718 complement(3308521..3309855) 1 NC_011071.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3309855 rumA 6475718 rumA Stenotrophomonas maltophilia R551-3 23S rRNA 5-methyluridine methyltransferase YP_002029353.1 3308521 R 391008 CDS YP_002029354.1 194366744 6475719 3309983..3310711 1 NC_011071.1 PFAM: response regulator receiver; Hpt domain protein; KEGG: xcb:XC_2965 hypothetical protein; response regulator receiver protein 3310711 6475719 Smal_2972 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029354.1 3309983 D 391008 CDS YP_002029355.1 194366745 6475720 complement(3311244..3311963) 1 NC_011071.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 3311963 recO 6475720 recO Stenotrophomonas maltophilia R551-3 DNA repair protein RecO YP_002029355.1 3311244 R 391008 CDS YP_002029356.1 194366746 6475721 complement(3311982..3312878) 1 NC_011071.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3312878 era 6475721 era Stenotrophomonas maltophilia R551-3 GTP-binding protein Era YP_002029356.1 3311982 R 391008 CDS YP_002029357.1 194366747 6475722 complement(3312875..3313555) 1 NC_011071.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3313555 rnc 6475722 rnc Stenotrophomonas maltophilia R551-3 ribonuclease III YP_002029357.1 3312875 R 391008 CDS YP_002029358.1 194366748 6475723 complement(3313545..3313928) 1 NC_011071.1 KEGG: xcv:XCV1375 hypothetical protein; hypothetical protein 3313928 6475723 Smal_2976 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029358.1 3313545 R 391008 CDS YP_002029359.1 194366749 6475724 complement(3313981..3314775) 1 NC_011071.1 KEGG: xac:XAC1323 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 3314775 6475724 Smal_2977 Stenotrophomonas maltophilia R551-3 signal peptidase I YP_002029359.1 3313981 R 391008 CDS YP_002029360.1 194366750 6475795 complement(3314830..3316638) 1 NC_011071.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3316638 6475795 Smal_2978 Stenotrophomonas maltophilia R551-3 GTP-binding protein LepA YP_002029360.1 3314830 R 391008 CDS YP_002029361.1 194366751 6475796 complement(3316804..3318339) 1 NC_011071.1 KEGG: xac:XAC1321 periplasmic protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 3318339 6475796 Smal_2979 Stenotrophomonas maltophilia R551-3 protease Do YP_002029361.1 3316804 R 391008 CDS YP_002029362.1 194366752 6475797 complement(3318414..3319295) 1 NC_011071.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: xac:XAC1320 regulatory protein; anti sigma-E protein, RseA 3319295 6475797 Smal_2980 Stenotrophomonas maltophilia R551-3 anti sigma-E protein, RseA YP_002029362.1 3318414 R 391008 CDS YP_002029363.1 194366753 6475798 complement(3319292..3319912) 1 NC_011071.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3319912 6475798 Smal_2981 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma factor RpoE YP_002029363.1 3319292 R 391008 CDS YP_002029364.1 194366754 6475799 3320147..3322210 1 NC_011071.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xcc:XCC1266 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 3322210 6475799 Smal_2982 Stenotrophomonas maltophilia R551-3 NAD-binding 3-hydroxyacyl-CoA dehydrogenase YP_002029364.1 3320147 D 391008 CDS YP_002029365.1 194366755 6475800 3322967..3323830 1 NC_011071.1 PFAM: Pirin domain protein; KEGG: xcb:XC_1402 pirin-related protein; Pirin domain-containing protein 3323830 6475800 Smal_2983 Stenotrophomonas maltophilia R551-3 Pirin domain-containing protein YP_002029365.1 3322967 D 391008 CDS YP_002029366.1 194366756 6475801 3323952..3324671 1 NC_011071.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bxe:Bxe_A0111 aquaporin Z; MIP family channel protein 3324671 6475801 Smal_2984 Stenotrophomonas maltophilia R551-3 MIP family channel protein YP_002029366.1 3323952 D 391008 CDS YP_002029367.1 194366757 6475802 3324868..3325326 1 NC_011071.1 KEGG: xcb:XC_1401 hypothetical protein; hypothetical protein 3325326 6475802 Smal_2985 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029367.1 3324868 D 391008 CDS YP_002029368.1 194366758 6475803 complement(3325410..3326261) 1 NC_011071.1 PFAM: Pirin domain protein; KEGG: xcb:XC_1399 pirin; Pirin domain-containing protein 3326261 6475803 Smal_2986 Stenotrophomonas maltophilia R551-3 Pirin domain-containing protein YP_002029368.1 3325410 R 391008 CDS YP_002029369.1 194366759 6475804 3326477..3328558 1 NC_011071.1 PFAM: carbon starvation protein CstA; KEGG: xcb:XC_1398 carbon starvation protein A; carbon starvation protein CstA 3328558 6475804 Smal_2987 Stenotrophomonas maltophilia R551-3 carbon starvation protein CstA YP_002029369.1 3326477 D 391008 CDS YP_002029370.1 194366760 6475805 3328558..3328782 1 NC_011071.1 PFAM: protein of unknown function DUF466; KEGG: xcb:XC_1397 hypothetical protein; hypothetical protein 3328782 6475805 Smal_2988 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029370.1 3328558 D 391008 CDS YP_002029371.1 194366761 6475806 complement(3329215..3330465) 1 NC_011071.1 PFAM: protein of unknown function DUF819; KEGG: xcv:XCV3040 hypothetical protein; hypothetical protein 3330465 6475806 Smal_2989 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029371.1 3329215 R 391008 CDS YP_002029372.1 194366762 6475807 3330599..3330988 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 3330988 6475807 Smal_2990 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029372.1 3330599 D 391008 CDS YP_002029373.1 194366763 6475808 complement(3331019..3332308) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xcv:XCV1254 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 3332308 6475808 Smal_2991 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029373.1 3331019 R 391008 CDS YP_002029374.1 194366764 6475809 complement(3332295..3333008) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC1221 two-component system regulatory protein; winged helix family two component transcriptional regulator 3333008 6475809 Smal_2992 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002029374.1 3332295 R 391008 CDS YP_002029375.1 194366765 6475810 3333139..3334842 1 NC_011071.1 PFAM: glycosyl transferase family 39; KEGG: xcb:XC_3127 hypothetical protein; glycosyl transferase family protein 3334842 6475810 Smal_2993 Stenotrophomonas maltophilia R551-3 glycosyl transferase family protein YP_002029375.1 3333139 D 391008 CDS YP_002029376.1 194366766 6475811 3334954..3335721 1 NC_011071.1 KEGG: xcv:XCV1251 hypothetical protein; hypothetical protein 3335721 6475811 Smal_2994 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029376.1 3334954 D 391008 CDS YP_002029377.1 194366767 6475812 3335718..3337367 1 NC_011071.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: xac:XAC1218 inner membrane protein; sulfatase 3337367 6475812 Smal_2995 Stenotrophomonas maltophilia R551-3 sulfatase YP_002029377.1 3335718 D 391008 CDS YP_002029378.1 194366768 6475813 3337967..3339931 1 NC_011071.1 PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: xcv:XCV1249 putative peptidyl dipeptidase precursor; peptidyl-dipeptidase A 3339931 6475813 Smal_2996 Stenotrophomonas maltophilia R551-3 peptidyl-dipeptidase A YP_002029378.1 3337967 D 391008 CDS YP_002029379.1 194366769 6475814 complement(3340051..3340443) 1 NC_011071.1 KEGG: xcb:XC_3133 hypothetical protein; hypothetical protein 3340443 6475814 Smal_2997 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029379.1 3340051 R 391008 CDS YP_002029380.1 194366770 6475815 complement(3340513..3341409) 1 NC_011071.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pae:PA2033 hypothetical protein; FAD-binding 9 siderophore-interacting domain-containing protein 3341409 6475815 Smal_2998 Stenotrophomonas maltophilia R551-3 FAD-binding 9 siderophore-interacting domain-containing protein YP_002029380.1 3340513 R 391008 CDS YP_002029381.1 194366771 6475816 complement(3341552..3342778) 1 NC_011071.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_3134 MFS transporter; Bcr/CflA subfamily drug resistance transporter 3342778 6475816 Smal_2999 Stenotrophomonas maltophilia R551-3 Bcr/CflA subfamily drug resistance transporter YP_002029381.1 3341552 R 391008 CDS YP_002029382.1 194366772 6475817 3343242..3346109 1 NC_011071.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3346109 6475817 Smal_3000 Stenotrophomonas maltophilia R551-3 glycine dehydrogenase YP_002029382.1 3343242 D 391008 CDS YP_002029383.1 194366773 6475818 complement(3346210..3346620) 1 NC_011071.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: cak:Caul_2584 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 3346620 6475818 Smal_3001 Stenotrophomonas maltophilia R551-3 3-demethylubiquinone-9 3-methyltransferase YP_002029383.1 3346210 R 391008 CDS YP_002029384.1 194366774 6475819 complement(3346727..3348094) 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: xcv:XCV3131 amino acid transporter family protein; amino acid permease-associated protein 3348094 6475819 Smal_3002 Stenotrophomonas maltophilia R551-3 amino acid permease-associated protein YP_002029384.1 3346727 R 391008 CDS YP_002029385.1 194366775 6475820 complement(3348177..3348899) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: xcb:XC_3141 transcriptional regulator AraC/XylS family; AraC family transcriptional regulator 3348899 6475820 Smal_3003 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029385.1 3348177 R 391008 CDS YP_002029386.1 194366776 6475821 3349007..3349393 1 NC_011071.1 KEGG: scl:sce9285 hypothetical protein; hypothetical protein 3349393 6475821 Smal_3004 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029386.1 3349007 D 391008 CDS YP_002029387.1 194366777 6475822 complement(3349403..3350104) 1 NC_011071.1 KEGG: pfl:PFL_3106 BioH protein, putative; BioH protein 3350104 6475822 Smal_3005 Stenotrophomonas maltophilia R551-3 BioH protein YP_002029387.1 3349403 R 391008 CDS YP_002029388.1 194366778 6475823 3350237..3350524 1 NC_011071.1 KEGG: xac:XAC3553 hypothetical protein; hypothetical protein 3350524 6475823 Smal_3006 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029388.1 3350237 D 391008 CDS YP_002029389.1 194366779 6475824 complement(3350611..3352734) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xom:XOO_2704 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3352734 6475824 Smal_3007 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002029389.1 3350611 R 391008 CDS YP_002029390.1 194366780 6475825 3352952..3354301 1 NC_011071.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: syp:SYNPCC7002_A1072 GTPase subunit of type II restriction endonuclease; ATPase 3354301 6475825 Smal_3008 Stenotrophomonas maltophilia R551-3 ATPase YP_002029390.1 3352952 D 391008 CDS YP_002029391.1 194366781 6475826 3354288..3355670 1 NC_011071.1 KEGG: syp:SYNPCC7002_A1073 hypothetical protein; hypothetical protein 3355670 6475826 Smal_3009 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029391.1 3354288 D 391008 CDS YP_002029392.1 194366782 6475827 3355760..3356716 1 NC_011071.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: xcb:XC_0920 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3356716 6475827 Smal_3010 Stenotrophomonas maltophilia R551-3 ErfK/YbiS/YcfS/YnhG family protein YP_002029392.1 3355760 D 391008 CDS YP_002029393.1 194366783 6475828 3356721..3357392 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xac:XAC3368 hypothetical protein; peptidase M23 3357392 6475828 Smal_3011 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002029393.1 3356721 D 391008 CDS YP_002029394.1 194366784 6475829 complement(3357328..3357996) 1 NC_011071.1 hypothetical protein 3357996 6475829 Smal_3012 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029394.1 3357328 R 391008 CDS YP_002029395.1 194366785 6475830 complement(3358114..3359406) 1 NC_011071.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3359406 6475830 Smal_3013 Stenotrophomonas maltophilia R551-3 adenylosuccinate synthetase YP_002029395.1 3358114 R 391008 CDS YP_002029396.1 194366786 6475831 complement(3359950..3360135) 1 NC_011071.1 KEGG: xfn:XfasM23_1720 hypothetical protein; hypothetical protein 3360135 6475831 Smal_3014 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029396.1 3359950 R 391008 CDS YP_002029397.1 194366787 6475832 complement(3360203..3361066) 1 NC_011071.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: xcc:XCC1051 integral membrane proteinase subunit; HflC protein 3361066 6475832 Smal_3015 Stenotrophomonas maltophilia R551-3 HflC protein YP_002029397.1 3360203 R 391008 CDS YP_002029398.1 194366788 6475833 complement(3361063..3362196) 1 NC_011071.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: xcv:XCV1175 putative integral membrane protease subunit HflK; HflK protein 3362196 6475833 Smal_3016 Stenotrophomonas maltophilia R551-3 HflK protein YP_002029398.1 3361063 R 391008 CDS YP_002029399.1 194366789 6475834 3362350..3363345 1 NC_011071.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xfa:XF0451 hypothetical protein; YhdH/YhfP family quinone oxidoreductase 3363345 6475834 Smal_3017 Stenotrophomonas maltophilia R551-3 YhdH/YhfP family quinone oxidoreductase YP_002029399.1 3362350 D 391008 CDS YP_002029400.1 194366790 6475835 3363434..3363805 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xcb:XC_3197 regulatory protein-PilH family; response regulator receiver protein 3363805 6475835 Smal_3018 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029400.1 3363434 D 391008 CDS YP_002029401.1 194366791 6475836 complement(3363904..3364791) 1 NC_011071.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: xcb:XC_3198 curved DNA binding protein; heat shock protein DnaJ domain-containing protein 3364791 6475836 Smal_3019 Stenotrophomonas maltophilia R551-3 heat shock protein DnaJ domain-containing protein YP_002029401.1 3363904 R 391008 CDS YP_002029402.1 194366792 6475837 3365053..3365535 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_3200 peroxiredoxin; redoxin domain-containing protein 3365535 6475837 Smal_3020 Stenotrophomonas maltophilia R551-3 redoxin domain-containing protein YP_002029402.1 3365053 D 391008 CDS YP_002029403.1 194366793 6475838 3365565..3366140 1 NC_011071.1 PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xcb:XC_3201 bacterioferritin; ferritin Dps family protein 3366140 6475838 Smal_3021 Stenotrophomonas maltophilia R551-3 ferritin Dps family protein YP_002029403.1 3365565 D 391008 CDS YP_002029404.1 194366794 6475839 complement(3366254..3368635) 1 NC_011071.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: xcv:XCV1168 bifunctional penicillin-binding protein 1C; penicillin-binding protein 1C 3368635 6475839 Smal_3022 Stenotrophomonas maltophilia R551-3 penicillin-binding protein 1C YP_002029404.1 3366254 R 391008 CDS YP_002029405.1 194366795 6475840 complement(3368700..3373607) 1 NC_011071.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: xcv:XCV1164 putative secreted protein; alpha-2-macroglobulin domain-containing protein 3373607 6475840 Smal_3023 Stenotrophomonas maltophilia R551-3 alpha-2-macroglobulin domain-containing protein YP_002029405.1 3368700 R 391008 CDS YP_002029406.1 194366796 6475841 complement(3373812..3375272) 1 NC_011071.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 3375272 prpD 6475841 prpD Stenotrophomonas maltophilia R551-3 2-methylcitrate dehydratase YP_002029406.1 3373812 R 391008 CDS YP_002029407.1 194366797 6475842 complement(3375425..3376603) 1 NC_011071.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: cvi:CV_2053 hypothetical protein; AcnD-accessory protein PrpF 3376603 6475842 Smal_3025 Stenotrophomonas maltophilia R551-3 AcnD-accessory protein PrpF YP_002029407.1 3375425 R 391008 CDS YP_002029408.1 194366798 6475843 complement(3376627..3376953) 1 NC_011071.1 PFAM: plasmid stabilization system; KEGG: xcb:XC_3211 hypothetical protein; plasmid stabilization system 3376953 6475843 Smal_3026 Stenotrophomonas maltophilia R551-3 plasmid stabilization system YP_002029408.1 3376627 R 391008 CDS YP_002029409.1 194366799 6475844 complement(3376940..3377197) 1 NC_011071.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: gvi:gsr0356 hypothetical protein; putative addiction module antidote protein 3377197 6475844 Smal_3027 Stenotrophomonas maltophilia R551-3 putative addiction module antidote protein YP_002029409.1 3376940 R 391008 CDS YP_002029410.1 194366800 6475845 complement(3377298..3379916) 1 NC_011071.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3379916 6475845 Smal_3028 Stenotrophomonas maltophilia R551-3 aconitate hydratase YP_002029410.1 3377298 R 391008 CDS YP_002029411.1 194366801 6475846 complement(3380014..3381171) 1 NC_011071.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3381171 6475846 Smal_3029 Stenotrophomonas maltophilia R551-3 methylcitrate synthase YP_002029411.1 3380014 R 391008 CDS YP_002029412.1 194366802 6475847 complement(3381208..3382101) 1 NC_011071.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3382101 prpB 6475847 prpB Stenotrophomonas maltophilia R551-3 2-methylisocitrate lyase YP_002029412.1 3381208 R 391008 CDS YP_002029413.1 194366803 6475848 3382255..3383838 1 NC_011071.1 KEGG: xac:XAC1136 propionate catabolism regulatory protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; putative sigma-54 specific transcriptional regulator 3383838 6475848 Smal_3031 Stenotrophomonas maltophilia R551-3 putative sigma-54 specific transcriptional regulator YP_002029413.1 3382255 D 391008 CDS YP_002029414.1 194366804 6475849 complement(3383913..3384374) 1 NC_011071.1 PFAM: DoxX family protein; KEGG: aba:Acid345_2898 DoxX; DoxX family protein 3384374 6475849 Smal_3032 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002029414.1 3383913 R 391008 CDS YP_002029415.1 194366805 6475850 complement(3384580..3385179) 1 NC_011071.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 3385179 6475850 Smal_3033 Stenotrophomonas maltophilia R551-3 pyridoxamine 5'-phosphate oxidase YP_002029415.1 3384580 R 391008 CDS YP_002029416.1 194366806 6475851 3385238..3386047 1 NC_011071.1 KEGG: ccr:CC_2910 hypothetical protein; hypothetical protein 3386047 6475851 Smal_3034 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029416.1 3385238 D 391008 CDS YP_002029417.1 194366807 6475852 complement(3386054..3386257) 1 NC_011071.1 PFAM: protein of unknown function DUF1458; KEGG: met:M446_2854 protein of unknown function DUF1458; hypothetical protein 3386257 6475852 Smal_3035 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029417.1 3386054 R 391008 CDS YP_002029418.1 194366808 6475853 3386357..3386899 1 NC_011071.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 3386899 aroK 6475853 aroK Stenotrophomonas maltophilia R551-3 shikimate kinase YP_002029418.1 3386357 D 391008 CDS YP_002029419.1 194366809 6475854 3386896..3388008 1 NC_011071.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3388008 aroB 6475854 aroB Stenotrophomonas maltophilia R551-3 3-dehydroquinate synthase YP_002029419.1 3386896 D 391008 CDS YP_002029420.1 194366810 6475855 3388131..3388370 1 NC_011071.1 KEGG: xcv:XCV3162 hypothetical protein; hypothetical protein 3388370 6475855 Smal_3038 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029420.1 3388131 D 391008 CDS YP_002029421.1 194366811 6475856 3388397..3389479 1 NC_011071.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 3389479 hemE 6475856 hemE Stenotrophomonas maltophilia R551-3 uroporphyrinogen decarboxylase YP_002029421.1 3388397 D 391008 CDS YP_002029422.1 194366812 6475857 3389572..3390981 1 NC_011071.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_1263 MFS transporter; EmrB/QacA subfamily drug resistance transporter 3390981 6475857 Smal_3040 Stenotrophomonas maltophilia R551-3 EmrB/QacA subfamily drug resistance transporter YP_002029422.1 3389572 D 391008 CDS YP_002029423.1 194366813 6475858 complement(3391532..3395059) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV3166 two-component system sensor histidine kinase-response regulator hybrid protein; histidine kinase 3395059 6475858 Smal_3041 Stenotrophomonas maltophilia R551-3 histidine kinase YP_002029423.1 3391532 R 391008 CDS YP_002029424.1 194366814 6475859 complement(3395157..3398702) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV3167 two-component system sensor histidine kinase-response regulator hybrid protein; integral membrane sensor hybrid histidine kinase 3398702 6475859 Smal_3042 Stenotrophomonas maltophilia R551-3 integral membrane sensor hybrid histidine kinase YP_002029424.1 3395157 R 391008 CDS YP_002029425.1 194366815 6475860 3398868..3399500 1 NC_011071.1 PFAM: YceI family protein; KEGG: xcb:XC_1259 hypothetical protein; hypothetical protein 3399500 6475860 Smal_3043 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029425.1 3398868 D 391008 CDS YP_002029426.1 194366816 6475861 3399511..3400083 1 NC_011071.1 PFAM: cytochrome B561; KEGG: xcb:XC_1258 cytochrome b561; cytochrome B561 3400083 6475861 Smal_3044 Stenotrophomonas maltophilia R551-3 cytochrome B561 YP_002029426.1 3399511 D 391008 CDS YP_002029427.1 194366817 6475862 3400087..3400659 1 NC_011071.1 PFAM: YceI family protein; KEGG: xcb:XC_1257 hypothetical protein; hypothetical protein 3400659 6475862 Smal_3045 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029427.1 3400087 D 391008 CDS YP_002029428.1 194366818 6475863 complement(3400739..3400966) 1 NC_011071.1 PFAM: glutaredoxin 2; KEGG: xom:XOO_1720 hypothetical protein; glutaredoxin 3400966 6475863 Smal_3046 Stenotrophomonas maltophilia R551-3 glutaredoxin YP_002029428.1 3400739 R 391008 CDS YP_002029429.1 194366819 6475864 3401067..3402449 1 NC_011071.1 KEGG: xcb:XC_1255 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 3402449 6475864 Smal_3047 Stenotrophomonas maltophilia R551-3 L-serine dehydratase 1 YP_002029429.1 3401067 D 391008 CDS YP_002029430.1 194366820 6475865 3402653..3403648 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1254 hydrolase; alpha/beta hydrolase fold domain-containing protein 3403648 6475865 Smal_3048 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002029430.1 3402653 D 391008 CDS YP_002029431.1 194366821 6475866 complement(3403739..3404806) 1 NC_011071.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: xcb:XC_1253 homoserine dehydrogenase; Homoserine dehydrogenase 3404806 6475866 Smal_3049 Stenotrophomonas maltophilia R551-3 Homoserine dehydrogenase YP_002029431.1 3403739 R 391008 CDS YP_002029432.1 194366822 6475949 complement(3404803..3406038) 1 NC_011071.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 3406038 6475949 Smal_3050 Stenotrophomonas maltophilia R551-3 cystathionine gamma-synthase YP_002029432.1 3404803 R 391008 CDS YP_002029433.1 194366823 6475950 complement(3406035..3407066) 1 NC_011071.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA; homoserine O-acetyltransferase 3407066 6475950 Smal_3051 Stenotrophomonas maltophilia R551-3 homoserine O-acetyltransferase YP_002029433.1 3406035 R 391008 CDS YP_002029434.1 194366824 6475951 3407412..3408305 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xfm:Xfasm12_1987 peptidase; peptidase M23 3408305 6475951 Smal_3052 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002029434.1 3407412 D 391008 CDS YP_002029435.1 194366825 6475952 3408372..3409976 1 NC_011071.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3409976 prfC 6475952 prfC Stenotrophomonas maltophilia R551-3 peptide chain release factor 3 YP_002029435.1 3408372 D 391008 CDS YP_002029436.1 194366826 6475953 3410149..3410793 1 NC_011071.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: xcv:XCV3180 hemolysin-III family membrane protein; hemolysin III family channel protein 3410793 6475953 Smal_3054 Stenotrophomonas maltophilia R551-3 hemolysin III family channel protein YP_002029436.1 3410149 D 391008 CDS YP_002029437.1 194366827 6475954 3410873..3412846 1 NC_011071.1 PFAM: AsmA family protein; KEGG: xcb:XC_1247 hypothetical protein; AsmA family protein 3412846 6475954 Smal_3055 Stenotrophomonas maltophilia R551-3 AsmA family protein YP_002029437.1 3410873 D 391008 CDS YP_002029438.1 194366828 6475955 complement(3413327..3413758) 1 NC_011071.1 PFAM: CBS domain containing protein; KEGG: xac:XAC3045 hypothetical protein; putative signal transduction protein 3413758 6475955 Smal_3056 Stenotrophomonas maltophilia R551-3 putative signal transduction protein YP_002029438.1 3413327 R 391008 CDS YP_002029439.1 194366829 6475956 complement(3413718..3414737) 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: xac:XAC3046 glucosyl transferase; family 2 glycosyl transferase 3414737 6475956 Smal_3057 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002029439.1 3413718 R 391008 CDS YP_002029440.1 194366830 6475957 complement(3414794..3415543) 1 NC_011071.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3415543 mtgA 6475957 mtgA Stenotrophomonas maltophilia R551-3 monofunctional biosynthetic peptidoglycan transglycosylase YP_002029440.1 3414794 R 391008 CDS YP_002029441.1 194366831 6475958 3415621..3416514 1 NC_011071.1 PFAM: Hsp33 protein; KEGG: xac:XAC3048 heat shock protein; Hsp33 protein 3416514 6475958 Smal_3059 Stenotrophomonas maltophilia R551-3 Hsp33 protein YP_002029441.1 3415621 D 391008 CDS YP_002029442.1 194366832 6475959 3416631..3417476 1 NC_011071.1 KEGG: xac:XAC3049 hypothetical protein; hypothetical protein 3417476 6475959 Smal_3060 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029442.1 3416631 D 391008 CDS YP_002029443.1 194366833 6475960 complement(3417680..3420637) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor plug 3420637 6475960 Smal_3061 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor plug YP_002029443.1 3417680 R 391008 CDS YP_002029444.1 194366834 6475961 complement(3420868..3421467) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xom:XOO_1705 transcriptional regulator; TetR family transcriptional regulator 3421467 6475961 Smal_3062 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029444.1 3420868 R 391008 CDS YP_002029445.1 194366835 6475962 3421609..3422526 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV3189 putative hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 3422526 6475962 Smal_3063 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002029445.1 3421609 D 391008 CDS YP_002029446.1 194366836 6475963 3422523..3425000 1 NC_011071.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3425000 fadE 6475963 fadE Stenotrophomonas maltophilia R551-3 acyl-CoA dehydrogenase YP_002029446.1 3422523 D 391008 CDS YP_002029447.1 194366837 6475964 3425077..3425544 1 NC_011071.1 KEGG: xcb:XC_3798 hypothetical protein; hypothetical protein 3425544 6475964 Smal_3065 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029447.1 3425077 D 391008 CDS YP_002029448.1 194366838 6475965 complement(3426125..3426475) 1 NC_011071.1 PFAM: protein of unknown function DUF1304; KEGG: xcb:XC_1237 hypothetical protein; hypothetical protein 3426475 6475965 Smal_3066 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029448.1 3426125 R 391008 CDS YP_002029449.1 194366839 6475966 complement(3426554..3427879) 1 NC_011071.1 KEGG: xcv:XCV3192 hypothetical protein; hypothetical protein 3427879 6475966 Smal_3067 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029449.1 3426554 R 391008 CDS YP_002029450.1 194366840 6475967 3428166..3429566 1 NC_011071.1 PFAM: beta-lactamase; KEGG: xcb:XC_1235 beta-lactamase; beta-lactamase 3429566 6475967 Smal_3068 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002029450.1 3428166 D 391008 CDS YP_002029451.1 194366841 6475968 complement(3429681..3430439) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: spe:Spro_0127 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3430439 6475968 Smal_3069 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002029451.1 3429681 R 391008 CDS YP_002029452.1 194366842 6475969 3430554..3431468 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcm:Bcenmc03_6395 transcriptional regulator, LysR family; LysR family transcriptional regulator 3431468 6475969 Smal_3070 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029452.1 3430554 D 391008 CDS YP_002029453.1 194366843 6475970 complement(3431531..3432082) 1 NC_011071.1 KEGG: xom:XOO_1699 histone H1; histone H1 3432082 6475970 Smal_3071 Stenotrophomonas maltophilia R551-3 histone H1 YP_002029453.1 3431531 R 391008 CDS YP_002029454.1 194366844 6475971 complement(3432858..3433253) 1 NC_011071.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3433253 6475971 Smal_3072 Stenotrophomonas maltophilia R551-3 glycine cleavage system protein H YP_002029454.1 3432858 R 391008 CDS YP_002029455.1 194366845 6475972 complement(3433347..3434459) 1 NC_011071.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3434459 gcvT 6475972 gcvT Stenotrophomonas maltophilia R551-3 glycine cleavage system aminomethyltransferase T YP_002029455.1 3433347 R 391008 CDS YP_002029456.1 194366846 6475973 complement(3434604..3435047) 1 NC_011071.1 PFAM: protein of unknown function DUF107; KEGG: xcb:XC_1231 hypothetical protein; hypothetical protein 3435047 6475973 Smal_3074 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029456.1 3434604 R 391008 CDS YP_002029457.1 194366847 6475974 complement(3435049..3436008) 1 NC_011071.1 PFAM: band 7 protein; KEGG: xcb:XC_1230 hypothetical protein; hypothetical protein 3436008 6475974 Smal_3075 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029457.1 3435049 R 391008 CDS YP_002029458.1 194366848 6475975 complement(3436075..3436377) 1 NC_011071.1 KEGG: bmn:BMA10247_0757 hypothetical protein; hypothetical protein 3436377 6475975 Smal_3076 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029458.1 3436075 R 391008 CDS YP_002029459.1 194366849 6475976 complement(3436517..3436846) 1 NC_011071.1 PFAM: protein of unknown function UPF0060; KEGG: xac:XAC3064 hypothetical protein; hypothetical protein 3436846 6475976 Smal_3077 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029459.1 3436517 R 391008 CDS YP_002029460.1 194366850 6475977 complement(3436843..3437682) 1 NC_011071.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3437682 mazG 6475977 mazG Stenotrophomonas maltophilia R551-3 nucleoside triphosphate pyrophosphohydrolase YP_002029460.1 3436843 R 391008 CDS YP_002029461.1 194366851 6475978 complement(3437696..3438499) 1 NC_011071.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: xac:XAC3066 sulfite synthesis pathway protein; 3'(2'),5'-bisphosphate nucleotidase 3438499 6475978 Smal_3079 Stenotrophomonas maltophilia R551-3 3'(2'),5'-bisphosphate nucleotidase YP_002029461.1 3437696 R 391008 CDS YP_002029462.1 194366852 6475979 complement(3438496..3439059) 1 NC_011071.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3439059 nudE 6475979 nudE Stenotrophomonas maltophilia R551-3 ADP-ribose diphosphatase NudE YP_002029462.1 3438496 R 391008 CDS YP_002029463.1 194366853 6475980 3439137..3440528 1 NC_011071.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3440528 6475980 Smal_3081 Stenotrophomonas maltophilia R551-3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002029463.1 3439137 D 391008 CDS YP_002029464.1 194366854 6475981 3440519..3441256 1 NC_011071.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3441256 6475981 Smal_3082 Stenotrophomonas maltophilia R551-3 16S ribosomal RNA methyltransferase RsmE YP_002029464.1 3440519 D 391008 CDS YP_002029465.1 194366855 6475982 complement(3441356..3441820) 1 NC_011071.1 PFAM: CheW domain protein; KEGG: xac:XAC3096 hypothetical protein; CheW protein 3441820 6475982 Smal_3083 Stenotrophomonas maltophilia R551-3 CheW protein YP_002029465.1 3441356 R 391008 CDS YP_002029466.1 194366856 6475983 complement(3441817..3443151) 1 NC_011071.1 KEGG: xcv:XCV3228 hypothetical protein; hypothetical protein 3443151 6475983 Smal_3084 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029466.1 3441817 R 391008 CDS YP_002029467.1 194366857 6475984 complement(3443138..3449776) 1 NC_011071.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xcc:XCC2921 PilL protein; CheA signal transduction histidine kinase 3449776 6475984 Smal_3085 Stenotrophomonas maltophilia R551-3 CheA signal transduction histidine kinase YP_002029467.1 3443138 R 391008 CDS YP_002029468.1 194366858 6475985 complement(3449877..3451913) 1 NC_011071.1 PFAM: chemotaxis sensory transducer; KEGG: xcb:XC_1186 pilus biogenesis protein; methyl-accepting chemotaxis sensory transducer 3451913 6475985 Smal_3086 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002029468.1 3449877 R 391008 CDS YP_002029469.1 194366859 6475986 complement(3451955..3452485) 1 NC_011071.1 PFAM: CheW domain protein; KEGG: xcb:XC_1185 pilus biogenesis protein; CheW protein 3452485 6475986 Smal_3087 Stenotrophomonas maltophilia R551-3 CheW protein YP_002029469.1 3451955 R 391008 CDS YP_002029470.1 194366860 6475987 complement(3452485..3452847) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xcb:XC_1184 PilH protein; response regulator receiver protein 3452847 6475987 Smal_3088 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029470.1 3452485 R 391008 CDS YP_002029471.1 194366861 6475988 complement(3452866..3453267) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xcb:XC_1183 pilus protein; response regulator receiver protein 3453267 6475988 Smal_3089 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029471.1 3452866 R 391008 CDS YP_002029472.1 194366862 6475989 3453508..3454455 1 NC_011071.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3454455 6475989 Smal_3090 Stenotrophomonas maltophilia R551-3 glutathione synthetase YP_002029472.1 3453508 D 391008 CDS YP_002029473.1 194366863 6475990 3454455..3455339 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xcb:XC_1181 TonB protein; TonB family protein 3455339 6475990 Smal_3091 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002029473.1 3454455 D 391008 CDS YP_002029474.1 194366864 6475991 complement(3455740..3456453) 1 NC_011071.1 PFAM: peptidase M22 glycoprotease; KEGG: xac:XAC3106 hypothetical protein; peptidase M22 glycoprotease 3456453 6475991 Smal_3092 Stenotrophomonas maltophilia R551-3 peptidase M22 glycoprotease YP_002029474.1 3455740 R 391008 CDS YP_002029475.1 194366865 6475992 complement(3456463..3458508) 1 NC_011071.1 SMART: helicase c2; KEGG: xcv:XCV3239 ATP-dependent helicase; helicase c2 3458508 6475992 Smal_3093 Stenotrophomonas maltophilia R551-3 helicase c2 YP_002029475.1 3456463 R 391008 CDS YP_002029476.1 194366866 6475993 complement(3458736..3459269) 1 NC_011071.1 KEGG: xcb:XC_1177 hypothetical protein; hypothetical protein 3459269 6475993 Smal_3094 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029476.1 3458736 R 391008 CDS YP_002029477.1 194366867 6475994 complement(3459269..3461710) 1 NC_011071.1 KEGG: xcv:XCV3241 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 3461710 6475994 Smal_3095 Stenotrophomonas maltophilia R551-3 penicillin-binding protein 1B YP_002029477.1 3459269 R 391008 CDS YP_002029478.1 194366868 6475995 complement(3461795..3462847) 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: lxx:Lxx05140 rhamnosyltransferase; family 2 glycosyl transferase 3462847 6475995 Smal_3096 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002029478.1 3461795 R 391008 CDS YP_002029479.1 194366869 6475996 complement(3462920..3463870) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: xcb:XC_0461 hypothetical protein; NAD-dependent epimerase/dehydratase 3463870 6475996 Smal_3097 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002029479.1 3462920 R 391008 CDS YP_002029480.1 194366870 6475997 complement(3463876..3465447) 1 NC_011071.1 KEGG: xac:XAC3112 hypothetical protein; hypothetical protein 3465447 6475997 Smal_3098 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029480.1 3463876 R 391008 CDS YP_002029481.1 194366871 6475998 complement(3465478..3467634) 1 NC_011071.1 KEGG: xoo:XOO1736 ATP:GTP 3'-pyrophosphotranferase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; RelA/SpoT domain protein; RelA/SpoT family protein 3467634 6475998 Smal_3099 Stenotrophomonas maltophilia R551-3 RelA/SpoT family protein YP_002029481.1 3465478 R 391008 CDS YP_002029482.1 194366872 6475999 3467765..3468301 1 NC_011071.1 KEGG: xac:XAC3118 hypothetical protein; hypothetical protein 3468301 6475999 Smal_3100 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029482.1 3467765 D 391008 CDS YP_002029483.1 194366873 6476000 complement(3468344..3472426) 1 NC_011071.1 KEGG: xcb:XC_1164 ATP dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 3472426 6476000 Smal_3101 Stenotrophomonas maltophilia R551-3 ATP-dependent helicase HrpA YP_002029483.1 3468344 R 391008 CDS YP_002029484.1 194366874 6476001 3472513..3473061 1 NC_011071.1 PFAM: Ferritin Dps family protein; KEGG: xac:XAC3123 DNA-binding related protein; ferritin Dps family protein 3473061 6476001 Smal_3102 Stenotrophomonas maltophilia R551-3 ferritin Dps family protein YP_002029484.1 3472513 D 391008 CDS YP_002029485.1 194366875 6476002 3473625..3475430 1 NC_011071.1 KEGG: xac:XAC3124 DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 3475430 6476002 Smal_3103 Stenotrophomonas maltophilia R551-3 ATP-dependent DNA helicase RecQ YP_002029485.1 3473625 D 391008 CDS YP_002029486.1 194366876 6476003 3475623..3476006 1 NC_011071.1 KEGG: xcv:XCV3746 putative secreted protein; hypothetical protein 3476006 6476003 Smal_3104 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029486.1 3475623 D 391008 CDS YP_002029487.1 194366877 6476004 3476082..3477884 1 NC_011071.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: xom:XOO_0686 copper resistance protein A precursor; CopA family copper-resistance protein 3477884 6476004 Smal_3105 Stenotrophomonas maltophilia R551-3 CopA family copper-resistance protein YP_002029487.1 3476082 D 391008 CDS YP_002029488.1 194366878 6476005 3477881..3478906 1 NC_011071.1 PFAM: copper resistance B precursor; KEGG: ppu:PP_5379 copper resistance protein B; copper resistance B 3478906 6476005 Smal_3106 Stenotrophomonas maltophilia R551-3 copper resistance B YP_002029488.1 3477881 D 391008 CDS YP_002029489.1 194366879 6476006 3478990..3479502 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xom:XOO_1541 acetyltransferase; N-acetyltransferase GCN5 3479502 6476006 Smal_3107 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029489.1 3478990 D 391008 CDS YP_002029490.1 194366880 6476007 complement(3479546..3479866) 1 NC_011071.1 KEGG: cff:CFF8240_1283 hypothetical protein; hypothetical protein 3479866 6476007 Smal_3108 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029490.1 3479546 R 391008 CDS YP_002029491.1 194366881 6476008 3480016..3480783 1 NC_011071.1 PFAM: Abortive infection protein; KEGG: xcb:XC_3203 hypothetical protein; abortive infection protein 3480783 6476008 Smal_3109 Stenotrophomonas maltophilia R551-3 abortive infection protein YP_002029491.1 3480016 D 391008 CDS YP_002029492.1 194366882 6476009 3480878..3481303 1 NC_011071.1 PFAM: response regulator receiver; KEGG: bra:BRADO2087 putative sensor histidine kinase with a response regulator receiver domain; response regulator receiver protein 3481303 6476009 Smal_3110 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029492.1 3480878 D 391008 CDS YP_002029493.1 194366883 6476010 complement(3481341..3482279) 1 NC_011071.1 PFAM: putative esterase; KEGG: bur:Bcep18194_A4870 putative esterase; putative esterase 3482279 6476010 Smal_3111 Stenotrophomonas maltophilia R551-3 putative esterase YP_002029493.1 3481341 R 391008 CDS YP_002029494.1 194366884 6476011 complement(3482364..3483206) 1 NC_011071.1 PFAM: putative esterase; KEGG: ccr:CC_0341 hypothetical protein; putative esterase 3483206 6476011 Smal_3112 Stenotrophomonas maltophilia R551-3 putative esterase YP_002029494.1 3482364 R 391008 CDS YP_002029495.1 194366885 6476012 3483380..3483718 1 NC_011071.1 hypothetical protein 3483718 6476012 Smal_3113 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029495.1 3483380 D 391008 CDS YP_002029496.1 194366886 6476014 3484046..3485002 1 NC_011071.1 KEGG: gfo:GFO_0920 secreted protein; hypothetical protein 3485002 6476014 Smal_3114 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029496.1 3484046 D 391008 CDS YP_002029497.1 194366887 6476015 complement(3485205..3485870) 1 NC_011071.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: xcb:XC_1145 transcriptional regulator; exsB protein 3485870 6476015 Smal_3115 Stenotrophomonas maltophilia R551-3 exsB protein YP_002029497.1 3485205 R 391008 CDS YP_002029498.1 194366888 6476016 complement(3485948..3486649) 1 NC_011071.1 PFAM: Radical SAM domain protein; KEGG: xcv:XCV3269 putative radical activating enzyme; radical SAM protein 3486649 6476016 Smal_3116 Stenotrophomonas maltophilia R551-3 radical SAM protein YP_002029498.1 3485948 R 391008 CDS YP_002029499.1 194366889 6476017 complement(3486887..3487705) 1 NC_011071.1 TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xcv:XCV3270 putative secreted protein; tol-pal system protein YbgF 3487705 6476017 Smal_3117 Stenotrophomonas maltophilia R551-3 tol-pal system protein YbgF YP_002029499.1 3486887 R 391008 CDS YP_002029500.1 194366890 6476018 complement(3487709..3488227) 1 NC_011071.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: xcv:XCV3271 PAL family outer membrane lipoprotein; peptidoglycan-associated lipoprotein 3488227 6476018 Smal_3118 Stenotrophomonas maltophilia R551-3 peptidoglycan-associated lipoprotein YP_002029500.1 3487709 R 391008 CDS YP_002029501.1 194366891 6476019 complement(3488292..3489611) 1 NC_011071.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3489611 tolB 6476019 tolB Stenotrophomonas maltophilia R551-3 translocation protein TolB YP_002029501.1 3488292 R 391008 CDS YP_002029502.1 194366892 6476020 complement(3489908..3490963) 1 NC_011071.1 TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: xac:XAC3143 TolA protein; protein TolA 3490963 6476020 Smal_3120 Stenotrophomonas maltophilia R551-3 protein TolA YP_002029502.1 3489908 R 391008 CDS YP_002029503.1 194366893 6476021 complement(3490953..3491381) 1 NC_011071.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xac:XAC3144 TolR protein; protein TolR 3491381 6476021 Smal_3121 Stenotrophomonas maltophilia R551-3 protein TolR YP_002029503.1 3490953 R 391008 CDS YP_002029504.1 194366894 6476022 complement(3491406..3492185) 1 NC_011071.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC3145 TolQ protein; protein TolQ 3492185 6476022 Smal_3122 Stenotrophomonas maltophilia R551-3 protein TolQ YP_002029504.1 3491406 R 391008 CDS YP_002029505.1 194366895 6476023 complement(3492196..3492627) 1 NC_011071.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: xac:XAC3146 hypothetical protein; tol-pal system-associated acyl-CoA thioesterase 3492627 6476023 Smal_3123 Stenotrophomonas maltophilia R551-3 tol-pal system-associated acyl-CoA thioesterase YP_002029505.1 3492196 R 391008 CDS YP_002029506.1 194366896 6476024 complement(3492617..3493657) 1 NC_011071.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3493657 ruvB 6476024 ruvB Stenotrophomonas maltophilia R551-3 Holliday junction DNA helicase RuvB YP_002029506.1 3492617 R 391008 CDS YP_002029507.1 194366897 6476025 complement(3493785..3495704) 1 NC_011071.1 PFAM: K potassium transporter; KEGG: xcb:XC_1134 potassium uptake protein; K potassium transporter 3495704 6476025 Smal_3125 Stenotrophomonas maltophilia R551-3 K potassium transporter YP_002029507.1 3493785 R 391008 CDS YP_002029508.1 194366898 6476026 complement(3495754..3496347) 1 NC_011071.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3496347 ruvA 6476026 ruvA Stenotrophomonas maltophilia R551-3 Holliday junction DNA helicase RuvA YP_002029508.1 3495754 R 391008 CDS YP_002029509.1 194366899 6476027 complement(3496361..3496882) 1 NC_011071.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3496882 ruvC 6476027 ruvC Stenotrophomonas maltophilia R551-3 Holliday junction resolvase YP_002029509.1 3496361 R 391008 CDS YP_002029510.1 194366900 6476028 complement(3497012..3497743) 1 NC_011071.1 PFAM: protein of unknown function DUF28; KEGG: xcb:XC_1131 hypothetical protein; hypothetical protein 3497743 6476028 Smal_3128 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029510.1 3497012 R 391008 CDS YP_002029511.1 194366901 6476029 complement(3497906..3498538) 1 NC_011071.1 PFAM: PGAP1 family protein; KEGG: xcv:XCV3283 hypothetical protein; PGAP1 family protein 3498538 6476029 Smal_3129 Stenotrophomonas maltophilia R551-3 PGAP1 family protein YP_002029511.1 3497906 R 391008 CDS YP_002029512.1 194366902 6476030 complement(3498614..3499135) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3153 acetyltransferase; N-acetyltransferase GCN5 3499135 6476030 Smal_3130 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029512.1 3498614 R 391008 CDS YP_002029513.1 194366903 6476102 complement(3499168..3499500) 1 NC_011071.1 KEGG: mdo:100012176 hypothetical protein LOC100012176; hypothetical protein 3499500 6476102 Smal_3131 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029513.1 3499168 R 391008 CDS YP_002029514.1 194366904 6476103 complement(3499517..3501268) 1 NC_011071.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3501268 aspS 6476103 aspS Stenotrophomonas maltophilia R551-3 aspartyl-tRNA synthetase YP_002029514.1 3499517 R 391008 CDS YP_002029515.1 194366905 6476104 3501427..3502170 1 NC_011071.1 KEGG: xac:XAC3155 hypothetical protein; hypothetical protein 3502170 6476104 Smal_3133 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029515.1 3501427 D 391008 CDS YP_002029516.1 194366906 6476105 complement(3502281..3502922) 1 NC_011071.1 KEGG: xcc:XCC3032 hypothetical protein; hypothetical protein 3502922 6476105 Smal_3134 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029516.1 3502281 R 391008 CDS YP_002029517.1 194366907 6476106 complement(3502976..3504190) 1 NC_011071.1 PFAM: sodium/hydrogen exchanger; KEGG: xfa:XF1398 Na+/H+ exchange protein; sodium/hydrogen exchanger 3504190 6476106 Smal_3135 Stenotrophomonas maltophilia R551-3 sodium/hydrogen exchanger YP_002029517.1 3502976 R 391008 CDS YP_002029518.1 194366908 6476107 complement(3504276..3505187) 1 NC_011071.1 PFAM: beta-lactamase; KEGG: xcv:XCV3293 beta-lactamase precursor; beta-lactamase 3505187 6476107 Smal_3136 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002029518.1 3504276 R 391008 CDS YP_002029519.1 194366909 6476108 3505365..3506228 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3294 transcriptional regulator, LysR family; LysR family transcriptional regulator 3506228 6476108 Smal_3137 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029519.1 3505365 D 391008 CDS YP_002029520.1 194366910 6476109 complement(3506321..3508186) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3165 ABC transporter ATP-binding protein; ABC transporter-like protein 3508186 6476109 Smal_3138 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002029520.1 3506321 R 391008 CDS YP_002029521.1 194366911 6476110 3508523..3510910 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfn:XfasM23_1277 TonB-dependent receptor; TonB-dependent receptor 3510910 6476110 Smal_3139 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029521.1 3508523 D 391008 CDS YP_002029522.1 194366912 6476111 3511080..3512780 1 NC_011071.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xcb:XC_1110 cation:proton antiporter; potassium efflux system protein 3512780 6476111 Smal_3140 Stenotrophomonas maltophilia R551-3 potassium efflux system protein YP_002029522.1 3511080 D 391008 CDS YP_002029523.1 194366913 6476112 complement(3513274..3514560) 1 NC_011071.1 KEGG: xcb:XC_1090 homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 3514560 6476112 Smal_3141 Stenotrophomonas maltophilia R551-3 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_002029523.1 3513274 R 391008 CDS YP_002029524.1 194366914 6476113 3514742..3515479 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pap:PSPA7_3498 probable two-component response regulator; winged helix family two component transcriptional regulator 3515479 6476113 Smal_3142 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002029524.1 3514742 D 391008 CDS YP_002029525.1 194366915 6476114 3515476..3516765 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pau:PA14_41270 putative two-component sensor; integral membrane sensor signal transduction histidine kinase 3516765 6476114 Smal_3143 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029525.1 3515476 D 391008 CDS YP_002029526.1 194366916 6476115 3516906..3517706 1 NC_011071.1 PFAM: MltA-interacting MipA family protein; KEGG: pap:PSPA7_3501 MltA-interacting protein MipA; MltA-interacting MipA family protein 3517706 6476115 Smal_3144 Stenotrophomonas maltophilia R551-3 MltA-interacting MipA family protein YP_002029526.1 3516906 D 391008 CDS YP_002029527.1 194366917 6476116 complement(3517779..3520364) 1 NC_011071.1 KEGG: xcv:XCV3324 ATP-dependent Clp protease subunit; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 3520364 6476116 Smal_3145 Stenotrophomonas maltophilia R551-3 ATP-dependent chaperone ClpB YP_002029527.1 3517779 R 391008 CDS YP_002029528.1 194366918 6476117 complement(3520546..3521367) 1 NC_011071.1 KEGG: xcb:XC_1084 hypothetical protein; hypothetical protein 3521367 6476117 Smal_3146 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029528.1 3520546 R 391008 CDS YP_002029529.1 194366919 6476118 3521538..3522248 1 NC_011071.1 KEGG: xcb:XC_1085 glutathione transferase; glutathione transferase 3522248 6476118 Smal_3147 Stenotrophomonas maltophilia R551-3 glutathione transferase YP_002029529.1 3521538 D 391008 CDS YP_002029530.1 194366920 6476119 complement(3522308..3523915) 1 NC_011071.1 PFAM: sulphate transporter; KEGG: xcv:XCV3330 putative permease; sulfate transporter 3523915 6476119 Smal_3148 Stenotrophomonas maltophilia R551-3 sulfate transporter YP_002029530.1 3522308 R 391008 CDS YP_002029531.1 194366921 6476120 complement(3524661..3526379) 1 NC_011071.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pae:PA5297 pyruvate dehydrogenase (cytochrome); thiamine pyrophosphate domain-containing TPP-binding protein 3526379 6476120 Smal_3149 Stenotrophomonas maltophilia R551-3 thiamine pyrophosphate domain-containing TPP-binding protein YP_002029531.1 3524661 R 391008 CDS YP_002029532.1 194366922 6476121 complement(3526509..3527366) 1 NC_011071.1 KEGG: bur:Bcep18194_B2775 hypothetical protein; hypothetical protein 3527366 6476121 Smal_3150 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029532.1 3526509 R 391008 CDS YP_002029533.1 194366923 6476122 complement(3527403..3527885) 1 NC_011071.1 KEGG: xcv:XCV3332 putative secreted protein; hypothetical protein 3527885 6476122 Smal_3151 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029533.1 3527403 R 391008 CDS YP_002029534.1 194366924 6476123 3528101..3530536 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1079 ferric enterobactin receptor; TonB-dependent receptor 3530536 6476123 Smal_3152 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029534.1 3528101 D 391008 CDS YP_002029535.1 194366925 6476124 3531108..3531866 1 NC_011071.1 KEGG: xac:XAC3209 trehalose-6-phosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3; HAD-superfamily hydrolase 3531866 6476124 Smal_3153 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002029535.1 3531108 D 391008 CDS YP_002029536.1 194366926 6476125 3531908..3533689 1 NC_011071.1 PFAM: glycoside hydrolase 15-related; KEGG: xcv:XCV3335 putative glycosyl hydrolase; glycoside hydrolase-like protein 3533689 6476125 Smal_3154 Stenotrophomonas maltophilia R551-3 glycoside hydrolase-like protein YP_002029536.1 3531908 D 391008 CDS YP_002029537.1 194366927 6476126 3533686..3535050 1 NC_011071.1 KEGG: xcb:XC_1076 trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 3535050 6476126 Smal_3155 Stenotrophomonas maltophilia R551-3 alpha,alpha-trehalose-phosphate synthase YP_002029537.1 3533686 D 391008 CDS YP_002029538.1 194366928 6476127 complement(3535123..3535560) 1 NC_011071.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: xcv:XCV3339 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 3535560 6476127 Smal_3156 Stenotrophomonas maltophilia R551-3 putative thiol-disulfide oxidoreductase DCC YP_002029538.1 3535123 R 391008 CDS YP_002029539.1 194366929 6476128 complement(3535535..3536059) 1 NC_011071.1 KEGG: xcv:XCV3340 hypothetical protein; hypothetical protein 3536059 6476128 Smal_3157 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029539.1 3535535 R 391008 CDS YP_002029540.1 194366930 6476129 complement(3536062..3536832) 1 NC_011071.1 PFAM: protein of unknown function DUF152; KEGG: xcv:XCV3341 hypothetical protein; hypothetical protein 3536832 6476129 Smal_3158 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029540.1 3536062 R 391008 CDS YP_002029541.1 194366931 6476130 complement(3536832..3537821) 1 NC_011071.1 KEGG: xcb:XC_1070 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 3537821 6476130 Smal_3159 Stenotrophomonas maltophilia R551-3 RluA family pseudouridine synthase YP_002029541.1 3536832 R 391008 CDS YP_002029542.1 194366932 6476131 3537953..3538822 1 NC_011071.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: xac:XAC3218 competence lipoprotein; outer membrane assembly lipoprotein YfiO 3538822 6476131 Smal_3160 Stenotrophomonas maltophilia R551-3 outer membrane assembly lipoprotein YfiO YP_002029542.1 3537953 D 391008 CDS YP_002029543.1 194366933 6476132 3539022..3540224 1 NC_011071.1 KEGG: rha:RHA1_ro02500 hypothetical protein; hypothetical protein 3540224 6476132 Smal_3161 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029543.1 3539022 D 391008 CDS YP_002029544.1 194366934 6476133 complement(3540317..3541951) 1 NC_011071.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 3541951 6476133 Smal_3162 Stenotrophomonas maltophilia R551-3 NAD synthetase YP_002029544.1 3540317 R 391008 CDS YP_002029545.1 194366935 6476134 complement(3542173..3543048) 1 NC_011071.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 3543048 6476134 Smal_3163 Stenotrophomonas maltophilia R551-3 succinyl-CoA synthetase subunit alpha YP_002029545.1 3542173 R 391008 CDS YP_002029546.1 194366936 6476135 complement(3543069..3544238) 1 NC_011071.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 3544238 sucC 6476135 sucC Stenotrophomonas maltophilia R551-3 succinyl-CoA synthetase subunit beta YP_002029546.1 3543069 R 391008 CDS YP_002029547.1 194366937 6476136 3544450..3546228 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xac:XAC3237 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 3546228 6476136 Smal_3165 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029547.1 3544450 D 391008 CDS YP_002029548.1 194366938 6476137 3546289..3547662 1 NC_011071.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: xcb:XC_1061 two-component system regulatory protein; two component sigma54 specific Fis family transcriptional regulator 3547662 6476137 Smal_3166 Stenotrophomonas maltophilia R551-3 two component sigma54 specific Fis family transcriptional regulator YP_002029548.1 3546289 D 391008 CDS YP_002029549.1 194366939 6476138 complement(3547895..3549628) 1 NC_011071.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: xac:XAC3239 pilus biogenesis protein; type IV-A pilus assembly ATPase PilB 3549628 6476138 Smal_3167 Stenotrophomonas maltophilia R551-3 type IV-A pilus assembly ATPase PilB YP_002029549.1 3547895 R 391008 CDS YP_002029550.1 194366940 6476139 3549946..3550845 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: hch:HCH_05273 glycosyltransferase involved in cell wall biogenesis; family 2 glycosyl transferase 3550845 6476139 Smal_3168 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002029550.1 3549946 D 391008 CDS YP_002029551.1 194366941 6476140 3550842..3552071 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00817 glycosyltransferase; group 1 glycosyl transferase 3552071 6476140 Smal_3169 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029551.1 3550842 D 391008 CDS YP_002029552.1 194366942 6476141 3552061..3553308 1 NC_011071.1 PFAM: polysaccharide biosynthesis protein; KEGG: aba:Acid345_2586 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3553308 6476141 Smal_3170 Stenotrophomonas maltophilia R551-3 polysaccharide biosynthesis protein YP_002029552.1 3552061 D 391008 CDS YP_002029553.1 194366943 6476142 complement(3553274..3554386) 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: csa:Csal_1715 glycosyl transferase, group 1; group 1 glycosyl transferase 3554386 6476142 Smal_3171 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029553.1 3553274 R 391008 CDS YP_002029554.1 194366944 6476143 complement(3554383..3555270) 1 NC_011071.1 TIGRFAM: methyltransferase FkbM family; KEGG: met:M446_4823 methyltransferase FkbM family; FkbM family methyltransferase 3555270 6476143 Smal_3172 Stenotrophomonas maltophilia R551-3 FkbM family methyltransferase YP_002029554.1 3554383 R 391008 CDS YP_002029555.1 194366945 6476144 3555353..3556465 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: scl:sce1025 glycosyltransferase; group 1 glycosyl transferase 3556465 6476144 Smal_3173 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029555.1 3555353 D 391008 CDS YP_002029556.1 194366946 6476145 complement(3556459..3558363) 1 NC_011071.1 KEGG: dol:Dole_1411 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3558363 6476145 Smal_3174 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029556.1 3556459 R 391008 CDS YP_002029557.1 194366947 6476146 complement(3558363..3558767) 1 NC_011071.1 PFAM: Fimbrial protein pilin; KEGG: xft:PD1924 fimbrial protein; fimbrial protein pilin 3558767 6476146 Smal_3175 Stenotrophomonas maltophilia R551-3 fimbrial protein pilin YP_002029557.1 3558363 R 391008 CDS YP_002029558.1 194366948 6476147 complement(3558863..3559276) 1 NC_011071.1 PFAM: Fimbrial protein pilin; KEGG: xac:XAC3241 fimbrillin; fimbrial protein pilin 3559276 6476147 Smal_3176 Stenotrophomonas maltophilia R551-3 fimbrial protein pilin YP_002029558.1 3558863 R 391008 CDS YP_002029559.1 194366949 6476148 3559631..3560890 1 NC_011071.1 PFAM: type II secretion system protein; KEGG: xcv:XCV3354 fimbrial assembly protein; type II secretion system protein 3560890 6476148 Smal_3177 Stenotrophomonas maltophilia R551-3 type II secretion system protein YP_002029559.1 3559631 D 391008 CDS YP_002029560.1 194366950 6476149 3560898..3561761 1 NC_011071.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: xcb:XC_1056 type IV pre-pilin leader peptidase; prepilin peptidase 3561761 6476149 Smal_3178 Stenotrophomonas maltophilia R551-3 prepilin peptidase YP_002029560.1 3560898 D 391008 CDS YP_002029561.1 194366951 6476150 3561773..3562384 1 NC_011071.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3562384 coaE 6476150 coaE Stenotrophomonas maltophilia R551-3 dephospho-CoA kinase YP_002029561.1 3561773 D 391008 CDS YP_002029562.1 194366952 6476151 complement(3562561..3563928) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xcv:XCV3364 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 3563928 6476151 Smal_3180 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029562.1 3562561 R 391008 CDS YP_002029563.1 194366953 6476152 complement(3563891..3564568) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC3250 two-component system regulatory protein; winged helix family two component transcriptional regulator 3564568 6476152 Smal_3181 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002029563.1 3563891 R 391008 CDS YP_002029564.1 194366954 6476153 complement(3564577..3565047) 1 NC_011071.1 KEGG: xac:XAC3251 hypothetical protein; hypothetical protein 3565047 6476153 Smal_3182 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029564.1 3564577 R 391008 CDS YP_002029565.1 194366955 6476154 complement(3565137..3565613) 1 NC_011071.1 KEGG: xcv:XCV3366 putative secreted protein; hypothetical protein 3565613 6476154 Smal_3183 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029565.1 3565137 R 391008 CDS YP_002029566.1 194366956 6476155 complement(3565859..3566737) 1 NC_011071.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: xcb:XC_1048 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 3566737 6476155 Smal_3184 Stenotrophomonas maltophilia R551-3 alpha-L-glutamate ligase YP_002029566.1 3565859 R 391008 CDS YP_002029567.1 194366957 6476156 3566869..3567291 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: abo:ABO_0293 hypothetical protein; thioesterase superfamily protein 3567291 6476156 Smal_3185 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002029567.1 3566869 D 391008 CDS YP_002029568.1 194366958 6476157 complement(3567417..3568598) 1 NC_011071.1 hypothetical protein 3568598 6476157 Smal_3186 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029568.1 3567417 R 391008 CDS YP_002029569.1 194366959 6476158 complement(3568638..3569042) 1 NC_011071.1 PFAM: protein of unknown function DUF805; KEGG: nar:Saro_1149 protein of unknown function DUF805; hypothetical protein 3569042 6476158 Smal_3187 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029569.1 3568638 R 391008 CDS YP_002029570.1 194366960 6476160 complement(3569474..3571327) 1 NC_011071.1 KEGG: xom:XOO_3175 lipase; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 3571327 6476160 Smal_3188 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002029570.1 3569474 R 391008 CDS YP_002029571.1 194366961 6476161 3571535..3571735 1 NC_011071.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 3571735 6476161 Smal_3189 Stenotrophomonas maltophilia R551-3 sulfur carrier protein ThiS YP_002029571.1 3571535 D 391008 CDS YP_002029572.1 194366962 6476162 3571867..3572661 1 NC_011071.1 PFAM: thiazole biosynthesis family protein; KEGG: xcb:XC_1015 thiazole synthase; thiazole biosynthesis family protein 3572661 6476162 Smal_3190 Stenotrophomonas maltophilia R551-3 thiazole biosynthesis family protein YP_002029572.1 3571867 D 391008 CDS YP_002029573.1 194366963 6476163 3572661..3573395 1 NC_011071.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3573395 trmB 6476163 trmB Stenotrophomonas maltophilia R551-3 tRNA (guanine-N(7)-)-methyltransferase YP_002029573.1 3572661 D 391008 CDS YP_002029574.1 194366964 6476164 3573423..3575270 1 NC_011071.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: xac:XAC3304 sulfur deprivation response regulator; TrkA-C domain-containing protein 3575270 6476164 Smal_3192 Stenotrophomonas maltophilia R551-3 TrkA-C domain-containing protein YP_002029574.1 3573423 D 391008 CDS YP_002029575.1 194366965 6476165 complement(3575390..3575725) 1 NC_011071.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: xcv:XCV3420 putative Rieske 2Fe-2S family protein; Rieske (2Fe-2S) domain-containing protein 3575725 6476165 Smal_3193 Stenotrophomonas maltophilia R551-3 Rieske (2Fe-2S) domain-containing protein YP_002029575.1 3575390 R 391008 CDS YP_002029576.1 194366966 6476166 3575904..3576185 1 NC_011071.1 KEGG: xac:XAC3306 hypothetical protein; hypothetical protein 3576185 6476166 Smal_3194 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029576.1 3575904 D 391008 CDS YP_002029577.1 194366967 6476167 3576261..3576977 1 NC_011071.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: xac:XAC3307 fumarylacetoacetate hydrolase; fumarylacetoacetate (FAA) hydrolase 3576977 6476167 Smal_3195 Stenotrophomonas maltophilia R551-3 fumarylacetoacetate (FAA) hydrolase YP_002029577.1 3576261 D 391008 CDS YP_002029578.1 194366968 6476168 3577033..3577437 1 NC_011071.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3577437 mscL 6476168 mscL Stenotrophomonas maltophilia R551-3 large-conductance mechanosensitive channel YP_002029578.1 3577033 D 391008 CDS YP_002029579.1 194366969 6476169 3577662..3579083 1 NC_011071.1 PFAM: peptidase M20; peptidase M28; KEGG: xac:XAC3309 aminopeptidase; peptidase M28 3579083 6476169 Smal_3197 Stenotrophomonas maltophilia R551-3 peptidase M28 YP_002029579.1 3577662 D 391008 CDS YP_002029580.1 194366970 6476170 complement(3579230..3580681) 1 NC_011071.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: eba:ebA3983 putative sodium/alanine symporter family protein; amino acid carrier protein 3580681 6476170 Smal_3198 Stenotrophomonas maltophilia R551-3 amino acid carrier protein YP_002029580.1 3579230 R 391008 CDS YP_002029581.1 194366971 6476171 complement(3580692..3581684) 1 NC_011071.1 KEGG: cak:Caul_4070 hypothetical protein; hypothetical protein 3581684 6476171 Smal_3199 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029581.1 3580692 R 391008 CDS YP_002029582.1 194366972 6476172 complement(3581922..3582758) 1 NC_011071.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: xcc:XCC3165 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase 3582758 6476172 Smal_3200 Stenotrophomonas maltophilia R551-3 TrmH family RNA methyltransferase YP_002029582.1 3581922 R 391008 CDS YP_002029583.1 194366973 6476255 complement(3582751..3584268) 1 NC_011071.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: xcb:XC_0999 sodium/proton-dependent alanine carrier protein; amino acid carrier protein 3584268 6476255 Smal_3201 Stenotrophomonas maltophilia R551-3 amino acid carrier protein YP_002029583.1 3582751 R 391008 CDS YP_002029584.1 194366974 6476256 complement(3584447..3585031) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3317 acetyltransferase; N-acetyltransferase GCN5 3585031 6476256 Smal_3202 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029584.1 3584447 R 391008 CDS YP_002029585.1 194366975 6476257 complement(3585024..3588149) 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xcb:XC_0996 acriflavin resistance protein; acriflavin resistance protein 3588149 6476257 Smal_3203 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002029585.1 3585024 R 391008 CDS YP_002029586.1 194366976 6476258 complement(3588146..3589252) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3444 membrane fusion protein; RND family efflux transporter MFP subunit 3589252 6476258 Smal_3204 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002029586.1 3588146 R 391008 CDS YP_002029587.1 194366977 6476259 complement(3589525..3591588) 1 NC_011071.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0648 TonB-dependent copper receptor; TonB-dependent copper receptor 3591588 6476259 Smal_3205 Stenotrophomonas maltophilia R551-3 TonB-dependent copper receptor YP_002029587.1 3589525 R 391008 CDS YP_002029588.1 194366978 6476260 complement(3591661..3592092) 1 NC_011071.1 KEGG: xcv:XCV3452 putative secreted protein; hypothetical protein 3592092 6476260 Smal_3206 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029588.1 3591661 R 391008 CDS YP_002029589.1 194366979 6476261 3592332..3592853 1 NC_011071.1 PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein 3592853 6476261 Smal_3207 Stenotrophomonas maltophilia R551-3 transposase IS3/IS911 family protein YP_002029589.1 3592332 D 391008 CDS YP_002029590.1 194366980 6476262 3592850..3593683 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit 3593683 6476262 Smal_3208 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002029590.1 3592850 D 391008 CDS YP_002029591.1 194366981 6476263 complement(3594159..3595142) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3457 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 3595142 6476263 Smal_3209 Stenotrophomonas maltophilia R551-3 transcriptional regulator CysB-like protein YP_002029591.1 3594159 R 391008 CDS YP_002029592.1 194366982 6476264 3595350..3596309 1 NC_011071.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xom:XOO_3209 cysteine synthase; cysteine synthase A 3596309 6476264 Smal_3210 Stenotrophomonas maltophilia R551-3 cysteine synthase A YP_002029592.1 3595350 D 391008 CDS YP_002029593.1 194366983 6476265 3596602..3597201 1 NC_011071.1 PFAM: Appr-1-p processing domain protein; KEGG: xcv:XCV3461 hypothetical protein; hypothetical protein 3597201 6476265 Smal_3211 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029593.1 3596602 D 391008 CDS YP_002029594.1 194366984 6476266 complement(3597293..3598441) 1 NC_011071.1 KEGG: sus:Acid_5510 peptidase domain protein; hypothetical protein 3598441 6476266 Smal_3212 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029594.1 3597293 R 391008 CDS YP_002029595.1 194366985 6476267 complement(3598571..3599575) 1 NC_011071.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: xcb:XC_0979 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase 3599575 6476267 Smal_3213 Stenotrophomonas maltophilia R551-3 Fructose-bisphosphate aldolase YP_002029595.1 3598571 R 391008 CDS YP_002029596.1 194366986 6476268 complement(3599772..3601238) 1 NC_011071.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 3601238 6476268 Smal_3214 Stenotrophomonas maltophilia R551-3 pyruvate kinase YP_002029596.1 3599772 R 391008 CDS YP_002029597.1 194366987 6476269 complement(3601453..3602106) 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xom:XOO_3214 indigoidine synthesis-like protein; HAD-superfamily hydrolase 3602106 6476269 Smal_3215 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002029597.1 3601453 R 391008 CDS YP_002029598.1 194366988 6476270 complement(3602103..3603278) 1 NC_011071.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3603278 pgk 6476270 pgk Stenotrophomonas maltophilia R551-3 phosphoglycerate kinase YP_002029598.1 3602103 R 391008 CDS YP_002029599.1 194366989 6476271 complement(3604004..3605380) 1 NC_011071.1 KEGG: xcv:XCV3466 hypothetical protein; hypothetical protein 3605380 6476271 Smal_3217 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029599.1 3604004 R 391008 CDS YP_002029600.1 194366990 6476272 complement(3605377..3608052) 1 NC_011071.1 KEGG: xcb:XC_0974 hypothetical protein; hypothetical protein 3608052 6476272 Smal_3218 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029600.1 3605377 R 391008 CDS YP_002029601.1 194366991 6476273 complement(3608178..3609182) 1 NC_011071.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: xac:XAC3352 glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 3609182 6476273 Smal_3219 Stenotrophomonas maltophilia R551-3 glyceraldehyde-3-phosphate dehydrogenase YP_002029601.1 3608178 R 391008 CDS YP_002029602.1 194366992 6476274 3609376..3610005 1 NC_011071.1 PFAM: OmpW family protein; KEGG: xcb:XC_0970 outer membrane protein; OmpW family protein 3610005 6476274 Smal_3220 Stenotrophomonas maltophilia R551-3 OmpW family protein YP_002029602.1 3609376 D 391008 CDS YP_002029603.1 194366993 6476275 3610572..3611390 1 NC_011071.1 PFAM: S1/P1 nuclease; KEGG: xcb:XC_0908 endonuclease; S1/P1 nuclease 3611390 6476275 Smal_3221 Stenotrophomonas maltophilia R551-3 S1/P1 nuclease YP_002029603.1 3610572 D 391008 CDS YP_002029604.1 194366994 6476276 3611402..3612202 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: xcb:XC_0907 beta-lactamase; beta-lactamase domain-containing protein 3612202 6476276 Smal_3222 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002029604.1 3611402 D 391008 CDS YP_002029605.1 194366995 6476277 complement(3612268..3612831) 1 NC_011071.1 KEGG: xcb:XC_0914 hypothetical protein; hypothetical protein 3612831 6476277 Smal_3223 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029605.1 3612268 R 391008 CDS YP_002029606.1 194366996 6476278 complement(3612828..3614069) 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: xom:XOO_1086 TonB-like protein; TonB family protein 3614069 6476278 Smal_3224 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002029606.1 3612828 R 391008 CDS YP_002029607.1 194366997 6476279 complement(3614062..3614427) 1 NC_011071.1 PFAM: Penicillinase repressor; KEGG: xac:XAC3363 transcriptional regulator BlaI family; CopY family transcriptional repressor 3614427 6476279 Smal_3225 Stenotrophomonas maltophilia R551-3 CopY family transcriptional repressor YP_002029607.1 3614062 R 391008 CDS YP_002029608.1 194366998 6476280 3614546..3615103 1 NC_011071.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: xcb:XC_0913 hypothetical protein; flavin reductase domain-containing protein 3615103 6476280 Smal_3226 Stenotrophomonas maltophilia R551-3 flavin reductase domain-containing protein YP_002029608.1 3614546 D 391008 CDS YP_002029609.1 194366999 6476281 3615138..3617090 1 NC_011071.1 KEGG: xcv:XCV3482 hypothetical protein; hypothetical protein 3617090 6476281 Smal_3227 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029609.1 3615138 D 391008 CDS YP_002029610.1 194367000 6476282 complement(3617216..3619213) 1 NC_011071.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3619213 6476282 Smal_3228 Stenotrophomonas maltophilia R551-3 transketolase YP_002029610.1 3617216 R 391008 CDS YP_002029611.1 194367001 6476283 complement(3619551..3620870) 1 NC_011071.1 PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3373 proton glutamate symport protein; sodium:dicarboxylate symporter 3620870 6476283 Smal_3229 Stenotrophomonas maltophilia R551-3 sodium:dicarboxylate symporter YP_002029611.1 3619551 R 391008 CDS YP_002029612.1 194367002 6476284 complement(3620928..3622643) 1 NC_011071.1 KEGG: xcv:XCV3492 hypothetical protein; hypothetical protein 3622643 6476284 Smal_3230 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029612.1 3620928 R 391008 CDS YP_002029613.1 194367003 6476285 complement(3622640..3624478) 1 NC_011071.1 PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xcv:XCV3493 hypothetical protein; hypothetical protein 3624478 6476285 Smal_3231 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029613.1 3622640 R 391008 CDS YP_002029614.1 194367004 6476286 complement(3624475..3625479) 1 NC_011071.1 PFAM: von Willebrand factor type A; KEGG: xcb:XC_0933 hypothetical protein; von Willebrand factor type A 3625479 6476286 Smal_3232 Stenotrophomonas maltophilia R551-3 von Willebrand factor type A YP_002029614.1 3624475 R 391008 CDS YP_002029615.1 194367005 6476287 complement(3625476..3625925) 1 NC_011071.1 KEGG: xac:XAC3377 hypothetical protein; hypothetical protein 3625925 6476287 Smal_3233 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029615.1 3625476 R 391008 CDS YP_002029616.1 194367006 6476288 complement(3625922..3626851) 1 NC_011071.1 PFAM: protein of unknown function DUF58; KEGG: xcv:XCV3495 hypothetical protein; hypothetical protein 3626851 6476288 Smal_3234 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029616.1 3625922 R 391008 CDS YP_002029617.1 194367007 6476289 complement(3626860..3627930) 1 NC_011071.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcb:XC_0936 methanol dehydrogenase regulatory protein; ATPase 3627930 6476289 Smal_3235 Stenotrophomonas maltophilia R551-3 ATPase YP_002029617.1 3626860 R 391008 CDS YP_002029618.1 194367008 6476290 complement(3628076..3630049) 1 NC_011071.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: xom:XOO_1058 fimbrial assembly protein; type IV pilus secretin PilQ 3630049 6476290 Smal_3236 Stenotrophomonas maltophilia R551-3 type IV pilus secretin PilQ YP_002029618.1 3628076 R 391008 CDS YP_002029619.1 194367009 6476291 complement(3630071..3630604) 1 NC_011071.1 PFAM: Pilus assembly protein PilP; KEGG: xac:XAC3382 fimbrial assembly protein; Pilus assembly protein PilP 3630604 6476291 Smal_3237 Stenotrophomonas maltophilia R551-3 Pilus assembly protein PilP YP_002029619.1 3630071 R 391008 CDS YP_002029620.1 194367010 6476292 complement(3630601..3631257) 1 NC_011071.1 PFAM: Pilus assembly protein PilO; KEGG: xac:XAC3383 fimbrial assembly membrane protein; Pilus assembly protein PilO 3631257 6476292 Smal_3238 Stenotrophomonas maltophilia R551-3 Pilus assembly protein PilO YP_002029620.1 3630601 R 391008 CDS YP_002029621.1 194367011 6476293 complement(3631254..3632126) 1 NC_011071.1 PFAM: Fimbrial assembly family protein; KEGG: xac:XAC3384 fimbrial assembly membrane protein; fimbrial assembly family protein 3632126 6476293 Smal_3239 Stenotrophomonas maltophilia R551-3 fimbrial assembly family protein YP_002029621.1 3631254 R 391008 CDS YP_002029622.1 194367012 6476294 complement(3632126..3633184) 1 NC_011071.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: xcb:XC_0941 fimbrial assembly membrane protein; type IV pilus assembly protein PilM 3633184 6476294 Smal_3240 Stenotrophomonas maltophilia R551-3 type IV pilus assembly protein PilM YP_002029622.1 3632126 R 391008 CDS YP_002029623.1 194367013 6476295 3633404..3635827 1 NC_011071.1 KEGG: xom:XOO_1053 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 3635827 6476295 Smal_3241 Stenotrophomonas maltophilia R551-3 penicillin-binding protein YP_002029623.1 3633404 D 391008 CDS YP_002029624.1 194367014 6476296 3636123..3636767 1 NC_011071.1 KEGG: xcb:XC_0943 hypothetical protein; hypothetical protein 3636767 6476296 Smal_3242 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029624.1 3636123 D 391008 CDS YP_002029625.1 194367015 6476297 3637160..3638125 1 NC_011071.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 3638125 6476297 Smal_3243 Stenotrophomonas maltophilia R551-3 transposase IS116/IS110/IS902 family protein YP_002029625.1 3637160 D 391008 CDS YP_002029626.1 194367016 6476298 complement(3638273..3639022) 1 NC_011071.1 hypothetical protein 3639022 6476298 Smal_3244 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029626.1 3638273 R 391008 CDS YP_002029627.1 194367017 6476299 complement(3639092..3644536) 1 NC_011071.1 PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: xac:XAC3546 outer membrane protein; hemagluttinin domain-containing protein 3644536 6476299 Smal_3245 Stenotrophomonas maltophilia R551-3 hemagluttinin domain-containing protein YP_002029627.1 3639092 R 391008 CDS YP_002029628.1 194367018 6476300 complement(3644598..3645305) 1 NC_011071.1 KEGG: bac:BamMC406_6643 putative fimbrial protein; putative fimbrial protein 3645305 6476300 Smal_3246 Stenotrophomonas maltophilia R551-3 putative fimbrial protein YP_002029628.1 3644598 R 391008 CDS YP_002029629.1 194367019 6476301 complement(3645324..3646475) 1 NC_011071.1 PFAM: CblD family pilus biogenesis initiator protein; KEGG: bac:BamMC406_6646 CblD family pilus biogenesis initiator protein; CblD family pilus biogenesis initiator protein 3646475 6476301 Smal_3247 Stenotrophomonas maltophilia R551-3 CblD family pilus biogenesis initiator protein YP_002029629.1 3645324 R 391008 CDS YP_002029630.1 194367020 6476302 complement(3646472..3649204) 1 NC_011071.1 KEGG: spe:Spro_0215 outermembrane fimbrial usher protein; outermembrane fimbrial usher protein 3649204 6476302 Smal_3248 Stenotrophomonas maltophilia R551-3 outermembrane fimbrial usher protein YP_002029630.1 3646472 R 391008 CDS YP_002029631.1 194367021 6476303 complement(3649266..3649766) 1 NC_011071.1 PFAM: CS1 type fimbrial major subunit; KEGG: spe:Spro_0216 CS1 type fimbrial major subunit; CS1 type fimbrial major subunit 3649766 6476303 Smal_3249 Stenotrophomonas maltophilia R551-3 CS1 type fimbrial major subunit YP_002029631.1 3649266 R 391008 CDS YP_002029632.1 194367022 6476304 complement(3650221..3650319) 1 NC_011071.1 hypothetical protein 3650319 6476304 Smal_3250 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029632.1 3650221 R 391008 CDS YP_002029633.1 194367023 6476305 complement(3650363..3651121) 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B1862 alpha/beta hydrolase; alpha/beta hydrolase fold domain-containing protein 3651121 6476305 Smal_3251 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002029633.1 3650363 R 391008 CDS YP_002029634.1 194367024 6476306 3651215..3651988 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcn:Bcen_4197 transcriptional regulator, AraC family; AraC family transcriptional regulator 3651988 6476306 Smal_3252 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029634.1 3651215 D 391008 CDS YP_002029635.1 194367025 6476307 complement(3652137..3653414) 1 NC_011071.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3653414 gltA 6476307 gltA Stenotrophomonas maltophilia R551-3 type II citrate synthase YP_002029635.1 3652137 R 391008 CDS YP_002029636.1 194367026 6476308 complement(3653711..3653953) 1 NC_011071.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3653953 rpmE2 6476308 rpmE2 Stenotrophomonas maltophilia R551-3 50S ribosomal protein L31 YP_002029636.1 3653711 R 391008 CDS YP_002029637.1 194367027 6476309 complement(3654041..3654979) 1 NC_011071.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: xcb:XC_0946 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 3654979 6476309 Smal_3255 Stenotrophomonas maltophilia R551-3 inosine/uridine-preferring nucleoside hydrolase YP_002029637.1 3654041 R 391008 CDS YP_002029638.1 194367028 6476310 complement(3655521..3657632) 1 NC_011071.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3657632 6476310 Smal_3256 Stenotrophomonas maltophilia R551-3 ATP-dependent DNA helicase RecG YP_002029638.1 3655521 R 391008 CDS YP_002029639.1 194367029 6476311 complement(3657640..3658026) 1 NC_011071.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_0948 translation initiation inhibitor; endoribonuclease L-PSP 3658026 6476311 Smal_3257 Stenotrophomonas maltophilia R551-3 endoribonuclease L-PSP YP_002029639.1 3657640 R 391008 CDS YP_002029640.1 194367030 6476312 complement(3658359..3660521) 1 NC_011071.1 KEGG: xcb:XC_0956 pentaphosphate guanosine-3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 3660521 6476312 Smal_3258 Stenotrophomonas maltophilia R551-3 (p)ppGpp synthetase I SpoT/RelA YP_002029640.1 3658359 R 391008 CDS YP_002029641.1 194367031 6476313 complement(3660628..3660927) 1 NC_011071.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3660927 6476313 Smal_3259 Stenotrophomonas maltophilia R551-3 DNA-directed RNA polymerase subunit omega YP_002029641.1 3660628 R 391008 CDS YP_002029642.1 194367032 6476314 complement(3661038..3661703) 1 NC_011071.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3661703 gmk 6476314 gmk Stenotrophomonas maltophilia R551-3 guanylate kinase YP_002029642.1 3661038 R 391008 CDS YP_002029643.1 194367033 6476315 3661995..3665063 1 NC_011071.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bav:BAV3142 formate dehydrogenase, major subunit; formate dehydrogenase subunit alpha 3665063 6476315 Smal_3261 Stenotrophomonas maltophilia R551-3 formate dehydrogenase subunit alpha YP_002029643.1 3661995 D 391008 CDS YP_002029644.1 194367034 6476316 3665074..3665991 1 NC_011071.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: bav:BAV3144 nformate dehydrogenase, iron-sulfur subunit; formate dehydrogenase subunit beta 3665991 6476316 Smal_3262 Stenotrophomonas maltophilia R551-3 formate dehydrogenase subunit beta YP_002029644.1 3665074 D 391008 CDS YP_002029645.1 194367035 6476317 3665988..3666635 1 NC_011071.1 TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: bmu:Bmul_4595 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 3666635 6476317 Smal_3263 Stenotrophomonas maltophilia R551-3 formate dehydrogenase subunit gamma YP_002029645.1 3665988 D 391008 CDS YP_002029646.1 194367036 6476318 3667029..3668012 1 NC_011071.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: bmn:BMA10247_A0574 formate dehydrogenase accessory protein; formate dehydrogenase accessory protein FdhE 3668012 6476318 Smal_3264 Stenotrophomonas maltophilia R551-3 formate dehydrogenase accessory protein FdhE YP_002029646.1 3667029 D 391008 CDS YP_002029647.1 194367037 6476319 3668016..3669440 1 NC_011071.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; L-seryl-tRNA selenium transferase; KEGG: bav:BAV3147 selenocysteinyl-tRNA(SeC) synthase; L-seryl-tRNA(Sec) selenium transferase 3669440 6476319 Smal_3265 Stenotrophomonas maltophilia R551-3 L-seryl-tRNA(Sec) selenium transferase YP_002029647.1 3668016 D 391008 CDS YP_002029648.1 194367038 6476320 3669437..3671368 1 NC_011071.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: bph:Bphy_4523 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 3671368 6476320 Smal_3266 Stenotrophomonas maltophilia R551-3 selenocysteine-specific translation elongation factor YP_002029648.1 3669437 D 391008 CDS YP_002029649.1 194367039 6476322 3671515..3672594 1 NC_011071.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bml:BMA10229_2135 selenophosphate synthetase; selenide, water dikinase 3672594 6476322 Smal_3267 Stenotrophomonas maltophilia R551-3 selenide, water dikinase YP_002029649.1 3671515 D 391008 CDS YP_002029650.1 194367040 6476323 3672777..3673922 1 NC_011071.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: neu:NE2119 hypothetical protein; filamentation induced by cAMP protein fic 3673922 6476323 Smal_3268 Stenotrophomonas maltophilia R551-3 filamentation induced by cAMP protein fic YP_002029650.1 3672777 D 391008 CDS YP_002029651.1 194367041 6476324 complement(3674074..3674934) 1 NC_011071.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: xcb:XC_0959 hypothetical protein; hypothetical protein 3674934 6476324 Smal_3269 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029651.1 3674074 R 391008 CDS YP_002029652.1 194367042 6476325 3675059..3675784 1 NC_011071.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3675784 rph 6476325 rph Stenotrophomonas maltophilia R551-3 ribonuclease PH YP_002029652.1 3675059 D 391008 CDS YP_002029653.1 194367043 6476326 3675781..3676170 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3737 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3676170 6476326 Smal_3271 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029653.1 3675781 D 391008 CDS YP_002029654.1 194367044 6476327 3676167..3676763 1 NC_011071.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3676763 6476327 Smal_3272 Stenotrophomonas maltophilia R551-3 putative deoxyribonucleotide triphosphate pyrophosphatase YP_002029654.1 3676167 D 391008 CDS YP_002029655.1 194367045 6476328 3676820..3678046 1 NC_011071.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3678046 6476328 Smal_3273 Stenotrophomonas maltophilia R551-3 coproporphyrinogen III oxidase YP_002029655.1 3676820 D 391008 CDS YP_002029656.1 194367046 6476329 3678250..3680532 1 NC_011071.1 PFAM: protein of unknown function DUF1631; KEGG: xcb:XC_0964 hypothetical protein; hypothetical protein 3680532 6476329 Smal_3274 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029656.1 3678250 D 391008 CDS YP_002029657.1 194367047 6476330 3680529..3680903 1 NC_011071.1 PFAM: type IV pilus assembly PilZ; KEGG: xcb:XC_0965 hypothetical protein; type IV pilus assembly PilZ 3680903 6476330 Smal_3275 Stenotrophomonas maltophilia R551-3 type IV pilus assembly PilZ YP_002029657.1 3680529 D 391008 CDS YP_002029658.1 194367048 6476331 3680979..3682310 1 NC_011071.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 3682310 6476331 Smal_3276 Stenotrophomonas maltophilia R551-3 proline dipeptidase YP_002029658.1 3680979 D 391008 CDS YP_002029659.1 194367049 6476332 complement(3682532..3683860) 1 NC_011071.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: xcb:XC_0905 aminopeptidase P; peptidase M24 3683860 6476332 Smal_3277 Stenotrophomonas maltophilia R551-3 peptidase M24 YP_002029659.1 3682532 R 391008 CDS YP_002029660.1 194367050 6476333 complement(3683860..3684408) 1 NC_011071.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3684408 6476333 Smal_3278 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029660.1 3683860 R 391008 CDS YP_002029661.1 194367051 6476334 3684561..3684782 1 NC_011071.1 KEGG: xac:XAC3407 hypothetical protein; hypothetical protein 3684782 6476334 Smal_3279 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029661.1 3684561 D 391008 CDS YP_002029662.1 194367052 6476335 3684779..3685075 1 NC_011071.1 PFAM: protein of unknown function DUF710; KEGG: xcb:XC_0902 hypothetical protein; hypothetical protein 3685075 6476335 Smal_3280 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029662.1 3684779 D 391008 CDS YP_002029663.1 194367053 6476409 3685498..3686091 1 NC_011071.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: xcv:XCV3526 putative 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 3686091 6476409 Smal_3281 Stenotrophomonas maltophilia R551-3 5-formyltetrahydrofolate cyclo-ligase YP_002029663.1 3685498 D 391008 CDS YP_002029664.1 194367054 6476410 3686088..3686567 1 NC_011071.1 PFAM: protein of unknown function DUF55; KEGG: xcv:XCV3527 hypothetical protein; hypothetical protein 3686567 6476410 Smal_3282 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029664.1 3686088 D 391008 CDS YP_002029665.1 194367055 6476411 3686590..3687237 1 NC_011071.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3687237 6476411 Smal_3283 Stenotrophomonas maltophilia R551-3 ribose-5-phosphate isomerase A YP_002029665.1 3686590 D 391008 CDS YP_002029666.1 194367056 6476412 3687258..3687704 1 NC_011071.1 PFAM: protein of unknown function DUF192; KEGG: xfn:XfasM23_0746 protein of unknown function DUF192; hypothetical protein 3687704 6476412 Smal_3284 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029666.1 3687258 D 391008 CDS YP_002029667.1 194367057 6476413 3687865..3688710 1 NC_011071.1 KEGG: xcv:XCV3530 hypothetical protein; hypothetical protein 3688710 6476413 Smal_3285 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029667.1 3687865 D 391008 CDS YP_002029668.1 194367058 6476414 complement(3688770..3688961) 1 NC_011071.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: xoo:XOO1124 rubredoxin; rubredoxin-type Fe(Cys)4 protein 3688961 6476414 Smal_3286 Stenotrophomonas maltophilia R551-3 rubredoxin-type Fe(Cys)4 protein YP_002029668.1 3688770 R 391008 CDS YP_002029669.1 194367059 6476415 3689029..3689655 1 NC_011071.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3689655 thiE 6476415 thiE Stenotrophomonas maltophilia R551-3 thiamine-phosphate pyrophosphorylase YP_002029669.1 3689029 D 391008 CDS YP_002029670.1 194367060 6476416 3689672..3690961 1 NC_011071.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3690961 6476416 Smal_3288 Stenotrophomonas maltophilia R551-3 glutamate-1-semialdehyde aminotransferase YP_002029670.1 3689672 D 391008 CDS YP_002029671.1 194367061 6476417 complement(3691042..3691491) 1 NC_011071.1 TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: xac:XAC3422 electron transfer protein azurin I; azurin 3691491 6476417 Smal_3289 Stenotrophomonas maltophilia R551-3 azurin YP_002029671.1 3691042 R 391008 CDS YP_002029672.1 194367062 6476418 3691615..3692217 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xom:XOO_1116 hydrolase; HAD-superfamily hydrolase 3692217 6476418 Smal_3290 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002029672.1 3691615 D 391008 CDS YP_002029673.1 194367063 6476419 complement(3692357..3693583) 1 NC_011071.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 3693583 argD 6476419 argD Stenotrophomonas maltophilia R551-3 acetylornithine transaminase protein YP_002029673.1 3692357 R 391008 CDS YP_002029674.1 194367064 6476420 3693647..3694519 1 NC_011071.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: xcb:XC_0881 ion transporter; Ion transport protein 3694519 6476420 Smal_3292 Stenotrophomonas maltophilia R551-3 Ion transport protein YP_002029674.1 3693647 D 391008 CDS YP_002029675.1 194367065 6476421 complement(3694622..3695587) 1 NC_011071.1 KEGG: xcb:XC_0880 hypothetical protein; hypothetical protein 3695587 6476421 Smal_3293 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029675.1 3694622 R 391008 CDS YP_002029676.1 194367066 6476422 complement(3695605..3696597) 1 NC_011071.1 KEGG: xcb:XC_0880 hypothetical protein; hypothetical protein 3696597 6476422 Smal_3294 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029676.1 3695605 R 391008 CDS YP_002029677.1 194367067 6476423 complement(3696691..3697509) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_0879 short chain dehydrogenase; short chain dehydrogenase 3697509 6476423 Smal_3295 Stenotrophomonas maltophilia R551-3 short chain dehydrogenase YP_002029677.1 3696691 R 391008 CDS YP_002029678.1 194367068 6476424 3697618..3698301 1 NC_011071.1 hypothetical protein 3698301 6476424 Smal_3296 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029678.1 3697618 D 391008 CDS YP_002029679.1 194367069 6476425 complement(3698365..3698871) 1 NC_011071.1 KEGG: azo:azo2571 hypothetical protein; hypothetical protein 3698871 6476425 Smal_3297 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029679.1 3698365 R 391008 CDS YP_002029680.1 194367070 6476426 complement(3698868..3699530) 1 NC_011071.1 KEGG: xcv:XCV3547 serine/threonine protein kinase; serine/threonine protein kinase 3699530 6476426 Smal_3298 Stenotrophomonas maltophilia R551-3 serine/threonine protein kinase YP_002029680.1 3698868 R 391008 CDS YP_002029681.1 194367071 6476427 3699616..3701610 1 NC_011071.1 PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: xcv:XCV3548 putative membrane-associated phospholipid phosphatase; PA-phosphatase-like phosphoesterase 3701610 6476427 Smal_3299 Stenotrophomonas maltophilia R551-3 PA-phosphatase-like phosphoesterase YP_002029681.1 3699616 D 391008 CDS YP_002029682.1 194367072 6476428 complement(3701853..3702431) 1 NC_011071.1 PFAM: peptidase S16 lon domain protein; KEGG: xac:XAC3435 hypothetical protein; peptidase S16 lon domain-containing protein 3702431 6476428 Smal_3300 Stenotrophomonas maltophilia R551-3 peptidase S16 lon domain-containing protein YP_002029682.1 3701853 R 391008 CDS YP_002029683.1 194367073 6476429 complement(3702428..3703792) 1 NC_011071.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: xcv:XCV3552 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3703792 6476429 Smal_3301 Stenotrophomonas maltophilia R551-3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002029683.1 3702428 R 391008 CDS YP_002029684.1 194367074 6476430 complement(3704120..3704683) 1 NC_011071.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3704683 adk 6476430 adk Stenotrophomonas maltophilia R551-3 adenylate kinase YP_002029684.1 3704120 R 391008 CDS YP_002029685.1 194367075 6476431 3704820..3706076 1 NC_011071.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3706076 6476431 Smal_3303 Stenotrophomonas maltophilia R551-3 6-phosphofructokinase YP_002029685.1 3704820 D 391008 CDS YP_002029686.1 194367076 6476432 3706282..3707076 1 NC_011071.1 KEGG: sal:Sala_0459 hypothetical protein; hypothetical protein 3707076 6476432 Smal_3304 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029686.1 3706282 D 391008 CDS YP_002029687.1 194367077 6476433 3707176..3707586 1 NC_011071.1 KEGG: bvi:Bcep1808_4883 hypothetical protein; hypothetical protein 3707586 6476433 Smal_3305 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029687.1 3707176 D 391008 CDS YP_002029688.1 194367078 6476434 complement(3707659..3708162) 1 NC_011071.1 KEGG: xcb:XC_0854 hypothetical protein; hypothetical protein 3708162 6476434 Smal_3306 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029688.1 3707659 R 391008 CDS YP_002029689.1 194367079 6476435 3708447..3710474 1 NC_011071.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3710474 hppA 6476435 hppA Stenotrophomonas maltophilia R551-3 membrane-bound proton-translocating pyrophosphatase YP_002029689.1 3708447 D 391008 CDS YP_002029690.1 194367080 6476436 complement(3710511..3711230) 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: azc:AZC_1260 C-terminal TonB protein; TonB family protein 3711230 6476436 Smal_3308 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002029690.1 3710511 R 391008 CDS YP_002029691.1 194367081 6476437 complement(3711227..3711652) 1 NC_011071.1 TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpe:RPE_3145 biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD 3711652 6476437 Smal_3309 Stenotrophomonas maltophilia R551-3 TonB system transport protein ExbD YP_002029691.1 3711227 R 391008 CDS YP_002029692.1 194367082 6476438 complement(3711662..3712390) 1 NC_011071.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_0747 MotA/TolQ/ExbB proton channel; tonB-system energizer ExbB 3712390 6476438 Smal_3310 Stenotrophomonas maltophilia R551-3 tonB-system energizer ExbB YP_002029692.1 3711662 R 391008 CDS YP_002029693.1 194367083 6476439 complement(3712377..3712844) 1 NC_011071.1 PFAM: protein of unknown function DUF454; KEGG: oan:Oant_0773 protein of unknown function DUF454; hypothetical protein 3712844 6476439 Smal_3311 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029693.1 3712377 R 391008 CDS YP_002029694.1 194367084 6476440 complement(3712876..3713463) 1 NC_011071.1 PFAM: Haem oxygenase-like; KEGG: azc:AZC_2040 heme oxygenase; heme oxygenase-like protein 3713463 6476440 Smal_3312 Stenotrophomonas maltophilia R551-3 heme oxygenase-like protein YP_002029694.1 3712876 R 391008 CDS YP_002029695.1 194367085 6476441 3713571..3713828 1 NC_011071.1 KEGG: dac:Daci_3042 hypothetical protein; hypothetical protein 3713828 6476441 Smal_3313 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029695.1 3713571 D 391008 CDS YP_002029696.1 194367086 6476442 complement(3713924..3716845) 1 NC_011071.1 PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_64710 putative extracellular heme-binding protein; TonB-dependent receptor 3716845 6476442 Smal_3314 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029696.1 3713924 R 391008 CDS YP_002029697.1 194367087 6476443 complement(3717090..3718028) 1 NC_011071.1 PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 3718028 6476443 Smal_3315 Stenotrophomonas maltophilia R551-3 anti-FecI sigma factor FecR YP_002029697.1 3717090 R 391008 CDS YP_002029698.1 194367088 6476444 complement(3718133..3718633) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mrd:Mrad2831_6088 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 3718633 6476444 Smal_3316 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002029698.1 3718133 R 391008 CDS YP_002029699.1 194367089 6476445 complement(3718706..3719179) 1 NC_011071.1 KEGG: xac:XAC3441 hypothetical protein; hypothetical protein 3719179 6476445 Smal_3317 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029699.1 3718706 R 391008 CDS YP_002029700.1 194367090 6476446 3719364..3719900 1 NC_011071.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 3719900 6476446 Smal_3318 Stenotrophomonas maltophilia R551-3 inorganic pyrophosphatase YP_002029700.1 3719364 D 391008 CDS YP_002029701.1 194367091 6476447 3720052..3721173 1 NC_011071.1 PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: xac:XAC3443 response regulator; putative signal transduction protein 3721173 6476447 Smal_3319 Stenotrophomonas maltophilia R551-3 putative signal transduction protein YP_002029701.1 3720052 D 391008 CDS YP_002029702.1 194367092 6476448 complement(3721230..3721436) 1 NC_011071.1 hypothetical protein 3721436 6476448 Smal_3320 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029702.1 3721230 R 391008 CDS YP_002029703.1 194367093 6476449 complement(3721616..3724579) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xoo:XOO0950 TonB-dependent receptor; TonB-dependent receptor 3724579 6476449 Smal_3321 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029703.1 3721616 R 391008 CDS YP_002029704.1 194367094 6476450 complement(3724629..3725528) 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xac:XAC3445 transcriptional regulator; AraC family transcriptional regulator 3725528 6476450 Smal_3322 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029704.1 3724629 R 391008 CDS YP_002029705.1 194367095 6476451 complement(3725643..3727967) 1 NC_011071.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: xcv:XCV3574 putative regulatory protein; transcriptional regulator domain-containing protein 3727967 6476451 Smal_3323 Stenotrophomonas maltophilia R551-3 transcriptional regulator domain-containing protein YP_002029705.1 3725643 R 391008 CDS YP_002029706.1 194367096 6476452 complement(3728237..3728908) 1 NC_011071.1 PFAM: Ion transport 2 domain protein; KEGG: aby:ABAYE0189 hypothetical protein; Ion transport 2 domain-containing protein 3728908 6476452 Smal_3324 Stenotrophomonas maltophilia R551-3 Ion transport 2 domain-containing protein YP_002029706.1 3728237 R 391008 CDS YP_002029707.1 194367097 6476453 complement(3729043..3730887) 1 NC_011071.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3730887 6476453 Smal_3325 Stenotrophomonas maltophilia R551-3 thiamine biosynthesis protein ThiC YP_002029707.1 3729043 R 391008 CDS YP_002029708.1 194367098 6476454 3731318..3732895 1 NC_011071.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein; choline/carnitine/betaine transporter 3732895 6476454 Smal_3326 Stenotrophomonas maltophilia R551-3 choline/carnitine/betaine transporter YP_002029708.1 3731318 D 391008 CDS YP_002029709.1 194367099 6476455 complement(3733457..3735229) 1 NC_011071.1 KEGG: xcb:XC_0842 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3735229 6476455 Smal_3327 Stenotrophomonas maltophilia R551-3 gamma-glutamyltransferase YP_002029709.1 3733457 R 391008 CDS YP_002029710.1 194367100 6476456 3735863..3736837 1 NC_011071.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3736837 6476456 Smal_3328 Stenotrophomonas maltophilia R551-3 ketol-acid reductoisomerase YP_002029710.1 3735863 D 391008 CDS YP_002029711.1 194367101 6476457 3736877..3738613 1 NC_011071.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 3738613 6476457 Smal_3329 Stenotrophomonas maltophilia R551-3 acetolactate synthase 2 catalytic subunit YP_002029711.1 3736877 D 391008 CDS YP_002029712.1 194367102 6476458 3738597..3738848 1 NC_011071.1 KEGG: xcb:XC_0839 acetolactate synthase isozyme II small subunit; acetolactate synthase isozyme II small subunit 3738848 6476458 Smal_3330 Stenotrophomonas maltophilia R551-3 acetolactate synthase isozyme II small subunit YP_002029712.1 3738597 D 391008 CDS YP_002029713.1 194367103 6476459 3738945..3740036 1 NC_011071.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 3740036 6476459 Smal_3331 Stenotrophomonas maltophilia R551-3 threonine dehydratase YP_002029713.1 3738945 D 391008 CDS YP_002029714.1 194367104 6476460 3740033..3741619 1 NC_011071.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3741619 6476460 Smal_3332 Stenotrophomonas maltophilia R551-3 2-isopropylmalate synthase YP_002029714.1 3740033 D 391008 CDS YP_002029715.1 194367105 6476461 3741630..3742403 1 NC_011071.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: noc:Noc_1261 hypothetical protein; type 11 methyltransferase 3742403 6476461 Smal_3333 Stenotrophomonas maltophilia R551-3 type 11 methyltransferase YP_002029715.1 3741630 D 391008 CDS YP_002029716.1 194367106 6476462 3742464..3743882 1 NC_011071.1 KEGG: cau:Caur_0168 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 3743882 6476462 Smal_3334 Stenotrophomonas maltophilia R551-3 3-isopropylmalate dehydratase large subunit YP_002029716.1 3742464 D 391008 CDS YP_002029717.1 194367107 6476463 3743882..3744460 1 NC_011071.1 KEGG: ade:Adeh_1979 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 3744460 6476463 Smal_3335 Stenotrophomonas maltophilia R551-3 3-isopropylmalate dehydratase small subunit YP_002029717.1 3743882 D 391008 CDS YP_002029718.1 194367108 6476464 3744450..3745511 1 NC_011071.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3745511 6476464 Smal_3336 Stenotrophomonas maltophilia R551-3 3-isopropylmalate dehydrogenase YP_002029718.1 3744450 D 391008 CDS YP_002029719.1 194367109 6476465 complement(3745619..3746392) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pap:PSPA7_2236 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3746392 6476465 Smal_3337 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002029719.1 3745619 R 391008 CDS YP_002029720.1 194367110 6476466 3746508..3747413 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI3785 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 3747413 6476466 Smal_3338 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029720.1 3746508 D 391008 CDS YP_002029721.1 194367111 6476467 complement(3747628..3750789) 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: ppf:Pput_4206 acriflavin resistance protein; acriflavin resistance protein 3750789 6476467 Smal_3339 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002029721.1 3747628 R 391008 CDS YP_002029722.1 194367112 6476468 complement(3750793..3751932) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 3751932 6476468 Smal_3340 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002029722.1 3750793 R 391008 CDS YP_002029723.1 194367113 6476469 3752056..3752736 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: xom:XOO_0853 transcriptional regulator; TetR family transcriptional regulator 3752736 6476469 Smal_3341 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029723.1 3752056 D 391008 CDS YP_002029724.1 194367114 6476470 3752873..3753520 1 NC_011071.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_0829 L-isoaspartate protein carboxylmethyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3753520 6476470 Smal_3342 Stenotrophomonas maltophilia R551-3 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002029724.1 3752873 D 391008 CDS YP_002029725.1 194367115 6476471 3753537..3754895 1 NC_011071.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: xac:XAC3463 TolC protein; TolC family type I secretion outer membrane protein 3754895 6476471 Smal_3343 Stenotrophomonas maltophilia R551-3 TolC family type I secretion outer membrane protein YP_002029725.1 3753537 D 391008 CDS YP_002029726.1 194367116 6476472 complement(3754996..3756246) 1 NC_011071.1 KEGG: xom:XOO_2010 cationic amino acid transporter; hypothetical protein 3756246 6476472 Smal_3344 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029726.1 3754996 R 391008 CDS YP_002029727.1 194367117 6476473 complement(3756460..3757758) 1 NC_011071.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3757758 6476473 Smal_3345 Stenotrophomonas maltophilia R551-3 3-deoxy-D-manno-octulosonic-acid transferase YP_002029727.1 3756460 R 391008 CDS YP_002029728.1 194367118 6476474 3757819..3758736 1 NC_011071.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 3758736 6476474 Smal_3346 Stenotrophomonas maltophilia R551-3 lipid A biosynthesis lauroyl acyltransferase YP_002029728.1 3757819 D 391008 CDS YP_002029729.1 194367119 6476475 complement(3758837..3760168) 1 NC_011071.1 PFAM: O-antigen polymerase; KEGG: xac:XAC3466 membrane protein; O-antigen polymerase 3760168 6476475 Smal_3347 Stenotrophomonas maltophilia R551-3 O-antigen polymerase YP_002029729.1 3758837 R 391008 CDS YP_002029730.1 194367120 6476476 complement(3760149..3761264) 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: xcb:XC_0824 glycosyl transferase; group 1 glycosyl transferase 3761264 6476476 Smal_3348 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029730.1 3760149 R 391008 CDS YP_002029731.1 194367121 6476477 complement(3761280..3761477) 1 NC_011071.1 KEGG: xcv:XCV3596 hypothetical protein; hypothetical protein 3761477 6476477 Smal_3349 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029731.1 3761280 R 391008 CDS YP_002029732.1 194367122 6476478 3761898..3765242 1 NC_011071.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xac:XAC3469 alpha-1,2-mannosidase; alpha-1,2-mannosidase 3765242 6476478 Smal_3350 Stenotrophomonas maltophilia R551-3 alpha-1,2-mannosidase YP_002029732.1 3761898 D 391008 CDS YP_002029733.1 194367123 6476479 3765239..3765973 1 NC_011071.1 KEGG: ath:AT2G15220 secretory protein, putative; hypothetical protein 3765973 6476479 Smal_3351 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029733.1 3765239 D 391008 CDS YP_002029734.1 194367124 6476562 complement(3766433..3768724) 1 NC_011071.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3768724 6476562 Smal_3352 Stenotrophomonas maltophilia R551-3 malic enzyme YP_002029734.1 3766433 R 391008 CDS YP_002029735.1 194367125 6476563 complement(3768954..3770297) 1 NC_011071.1 PFAM: sodium:dicarboxylate symporter; KEGG: xcb:XC_0820 C4-dicarboxylate transporter DctA; sodium:dicarboxylate symporter 3770297 6476563 Smal_3353 Stenotrophomonas maltophilia R551-3 sodium:dicarboxylate symporter YP_002029735.1 3768954 R 391008 CDS YP_002029736.1 194367126 6476564 3770630..3771799 1 NC_011071.1 PFAM: phosphate-selective porin O and P; KEGG: xfn:XfasM23_0263 phosphate-selective porin O and P; phosphate-selective porin O and P 3771799 6476564 Smal_3354 Stenotrophomonas maltophilia R551-3 phosphate-selective porin O and P YP_002029736.1 3770630 D 391008 CDS YP_002029737.1 194367127 6476565 3771866..3774508 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: xoo:XOO1115 sensor histidine kinase; PAS/PAC sensor hybrid histidine kinase 3774508 6476565 Smal_3355 Stenotrophomonas maltophilia R551-3 PAS/PAC sensor hybrid histidine kinase YP_002029737.1 3771866 D 391008 CDS YP_002029738.1 194367128 6476566 complement(3775027..3775677) 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcb:XC_0816 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator 3775677 6476566 Smal_3356 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002029738.1 3775027 R 391008 CDS YP_002029739.1 194367129 6476567 complement(3775754..3776809) 1 NC_011071.1 PFAM: extracellular solute-binding protein family 1; KEGG: xcv:XCV3609 putative periplasmic iron-binding protein; family 1 extracellular solute-binding protein 3776809 6476567 Smal_3357 Stenotrophomonas maltophilia R551-3 family 1 extracellular solute-binding protein YP_002029739.1 3775754 R 391008 CDS YP_002029740.1 194367130 6476568 complement(3776806..3778197) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: xcv:XCV3610 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 3778197 6476568 Smal_3358 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029740.1 3776806 R 391008 CDS YP_002029741.1 194367131 6476569 complement(3778190..3778885) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV3611 two-component system regulatory protein; winged helix family two component transcriptional regulator 3778885 6476569 Smal_3359 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002029741.1 3778190 R 391008 CDS YP_002029742.1 194367132 6476570 3779126..3780301 1 NC_011071.1 PFAM: phosphate-selective porin O and P; KEGG: xac:XAC3484 porin O; phosphate-selective porin O and P 3780301 6476570 Smal_3360 Stenotrophomonas maltophilia R551-3 phosphate-selective porin O and P YP_002029742.1 3779126 D 391008 CDS YP_002029743.1 194367133 6476571 3780374..3781705 1 NC_011071.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xcv:XCV3613 citrate:H+ symporter; CitMHS family citrate/H+ symporter 3781705 6476571 Smal_3361 Stenotrophomonas maltophilia R551-3 CitMHS family citrate/H+ symporter YP_002029743.1 3780374 D 391008 CDS YP_002029744.1 194367134 6476572 3781730..3782470 1 NC_011071.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3782470 fabG 6476572 fabG Stenotrophomonas maltophilia R551-3 3-ketoacyl-ACP reductase YP_002029744.1 3781730 D 391008 CDS YP_002029745.1 194367135 6476573 3783074..3785371 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC4368 TonB-dependent receptor; TonB-dependent receptor 3785371 6476573 Smal_3363 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029745.1 3783074 D 391008 CDS YP_002029746.1 194367136 6476574 complement(3785816..3787069) 1 NC_011071.1 PFAM: protein of unknown function DUF1704; KEGG: xac:XAC3492 hypothetical protein; hypothetical protein 3787069 6476574 Smal_3364 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029746.1 3785816 R 391008 CDS YP_002029747.1 194367137 6476575 complement(3787280..3788389) 1 NC_011071.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3788389 6476575 Smal_3365 Stenotrophomonas maltophilia R551-3 ribosome-associated GTPase YP_002029747.1 3787280 R 391008 CDS YP_002029748.1 194367138 6476576 3788480..3789778 1 NC_011071.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 3789778 6476576 Smal_3366 Stenotrophomonas maltophilia R551-3 aminotransferase AlaT YP_002029748.1 3788480 D 391008 CDS YP_002029749.1 194367139 6476577 3789782..3790399 1 NC_011071.1 PFAM: lipolytic protein G-D-S-L family; KEGG: xcv:XCV3623 hypothetical protein; G-D-S-L family lipolytic protein 3790399 6476577 Smal_3367 Stenotrophomonas maltophilia R551-3 G-D-S-L family lipolytic protein YP_002029749.1 3789782 D 391008 CDS YP_002029750.1 194367140 6476578 3790404..3791120 1 NC_011071.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xcv:XCV3624 putative methyltransferase; type 12 methyltransferase 3791120 6476578 Smal_3368 Stenotrophomonas maltophilia R551-3 type 12 methyltransferase YP_002029750.1 3790404 D 391008 CDS YP_002029751.1 194367141 6476579 complement(3791189..3791968) 1 NC_011071.1 PFAM: polysaccharide deacetylase; KEGG: xcb:XC_0797 acetylxylan esterase; polysaccharide deacetylase 3791968 6476579 Smal_3369 Stenotrophomonas maltophilia R551-3 polysaccharide deacetylase YP_002029751.1 3791189 R 391008 CDS YP_002029752.1 194367142 6476580 3792028..3792954 1 NC_011071.1 TIGRFAM: glutaredoxin-like protein; PFAM: HesB/YadR/YfhF-family protein; Rhodanese domain protein; glutaredoxin; KEGG: xom:XOO_0988 glutaredoxin-like protein; glutaredoxin-like protein 3792954 6476580 Smal_3370 Stenotrophomonas maltophilia R551-3 glutaredoxin-like protein YP_002029752.1 3792028 D 391008 CDS YP_002029753.1 194367143 6476581 complement(3793032..3793571) 1 NC_011071.1 PFAM: protein of unknown function DUF924; KEGG: mlo:mlr0784 hypothetical protein; hypothetical protein 3793571 6476581 Smal_3371 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029753.1 3793032 R 391008 CDS YP_002029754.1 194367144 6476582 complement(3793615..3794391) 1 NC_011071.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3794391 6476582 Smal_3372 Stenotrophomonas maltophilia R551-3 AMP nucleosidase YP_002029754.1 3793615 R 391008 CDS YP_002029755.1 194367145 6476583 3794545..3795954 1 NC_011071.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: xcb:XC_0793 hypothetical protein; amidohydrolase 3795954 6476583 Smal_3373 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002029755.1 3794545 D 391008 CDS YP_002029756.1 194367146 6476584 3795954..3797216 1 NC_011071.1 PFAM: amidohydrolase; KEGG: xcb:XC_0792 hypothetical protein; amidohydrolase 3797216 6476584 Smal_3374 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002029756.1 3795954 D 391008 CDS YP_002029757.1 194367147 6476585 3797237..3797869 1 NC_011071.1 PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_4809 DsbA oxidoreductase; DSBA oxidoreductase 3797869 6476585 Smal_3375 Stenotrophomonas maltophilia R551-3 DSBA oxidoreductase YP_002029757.1 3797237 D 391008 CDS YP_002029758.1 194367148 6476586 3797965..3798906 1 NC_011071.1 PFAM: DegV family protein; KEGG: xcv:XCV3635 DegV family protein; DegV family protein 3798906 6476586 Smal_3376 Stenotrophomonas maltophilia R551-3 DegV family protein YP_002029758.1 3797965 D 391008 CDS YP_002029759.1 194367149 6476587 3798984..3799322 1 NC_011071.1 KEGG: xom:XOO_3643 hypothetical protein; hypothetical protein 3799322 6476587 Smal_3377 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029759.1 3798984 D 391008 CDS YP_002029760.1 194367150 6476588 complement(3799533..3800945) 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_0144 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 3800945 6476588 Smal_3378 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002029760.1 3799533 R 391008 CDS YP_002029761.1 194367151 6476589 complement(3800942..3802024) 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: ppu:PP_1272 multidrug efflux MFS membrane fusion protein, putative; secretion protein HlyD family protein 3802024 6476589 Smal_3379 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002029761.1 3800942 R 391008 CDS YP_002029762.1 194367152 6476590 complement(3802046..3803575) 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_0142 multidrug efflux MFS transporter, putative; major facilitator superfamily protein 3803575 6476590 Smal_3380 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002029762.1 3802046 R 391008 CDS YP_002029763.1 194367153 6476591 complement(3803730..3804647) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0141 transcriptional regulator, LysR family; LysR family transcriptional regulator 3804647 6476591 Smal_3381 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029763.1 3803730 R 391008 CDS YP_002029764.1 194367154 6476592 3804789..3805235 1 NC_011071.1 PFAM: UspA domain protein; KEGG: pau:PA14_27450 putative universal stress protein; UspA domain-containing protein 3805235 6476592 Smal_3382 Stenotrophomonas maltophilia R551-3 UspA domain-containing protein YP_002029764.1 3804789 D 391008 CDS YP_002029765.1 194367155 6476593 3805241..3805711 1 NC_011071.1 hypothetical protein 3805711 6476593 Smal_3383 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029765.1 3805241 D 391008 CDS YP_002029766.1 194367156 6476594 complement(3805766..3807211) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3602 FOG: GGDEF domain; diguanylate cyclase 3807211 6476594 Smal_3384 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002029766.1 3805766 R 391008 CDS YP_002029767.1 194367157 6476595 complement(3807398..3808228) 1 NC_011071.1 KEGG: xcb:XC_0777 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 3808228 6476595 Smal_3385 Stenotrophomonas maltophilia R551-3 S-formylglutathione hydrolase YP_002029767.1 3807398 R 391008 CDS YP_002029768.1 194367158 6476596 complement(3808292..3808651) 1 NC_011071.1 KEGG: aba:Acid345_2783 tRNA pseudouridine synthase C; hypothetical protein 3808651 6476596 Smal_3386 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029768.1 3808292 R 391008 CDS YP_002029769.1 194367159 6476597 complement(3808660..3809769) 1 NC_011071.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aci:ACIAD1879 glutathione-dependent formaldehyde dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3809769 6476597 Smal_3387 Stenotrophomonas maltophilia R551-3 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_002029769.1 3808660 R 391008 CDS YP_002029770.1 194367160 6476598 complement(3809827..3810102) 1 NC_011071.1 PFAM: protein of unknown function DUF156; KEGG: xac:XAC0733 hypothetical protein; hypothetical protein 3810102 6476598 Smal_3388 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029770.1 3809827 R 391008 CDS YP_002029771.1 194367161 6476599 3810290..3810709 1 NC_011071.1 KEGG: bcl:ABC3800 hypothetical protein; hypothetical protein 3810709 6476599 Smal_3389 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029771.1 3810290 D 391008 CDS YP_002029772.1 194367162 6476600 complement(3810718..3811623) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psb:Psyr_2945 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3811623 6476600 Smal_3390 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029772.1 3810718 R 391008 CDS YP_002029773.1 194367163 6476601 3811754..3812857 1 NC_011071.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: reh:H16_B2164 NADH:flavin oxidoreductase; NADH:flavin oxidoreductase 3812857 6476601 Smal_3391 Stenotrophomonas maltophilia R551-3 NADH:flavin oxidoreductase YP_002029773.1 3811754 D 391008 CDS YP_002029774.1 194367164 6476602 3812917..3813333 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psa:PST_0059 putative lyase; Glyoxalase/bleomycin resistance protein/dioxygenase 3813333 6476602 Smal_3392 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029774.1 3812917 D 391008 CDS YP_002029775.1 194367165 6476603 complement(3813346..3814041) 1 NC_011071.1 KEGG: dac:Daci_3000 hypothetical protein; hypothetical protein 3814041 6476603 Smal_3393 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029775.1 3813346 R 391008 CDS YP_002029776.1 194367166 6476604 3814120..3814782 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: aha:AHA_3213 probable transcriptional regulator, TetR family; TetR family transcriptional regulator 3814782 6476604 Smal_3394 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029776.1 3814120 D 391008 CDS YP_002029777.1 194367167 6476605 complement(3814855..3815739) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_3279 transcriptional regulator, LysR family; LysR family transcriptional regulator 3815739 6476605 Smal_3395 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029777.1 3814855 R 391008 CDS YP_002029778.1 194367168 6476606 3815846..3816904 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mms:mma_1872 alcohol dehydrogenase (NADP+); alcohol dehydrogenase GroES domain-containing protein 3816904 6476606 Smal_3396 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase GroES domain-containing protein YP_002029778.1 3815846 D 391008 CDS YP_002029779.1 194367169 6476607 3817062..3818318 1 NC_011071.1 PFAM: NnrS family protein; KEGG: spu:754466 similar to NADP-dependent alcohol hydrogenase, putative; NnrS family protein 3818318 6476607 Smal_3397 Stenotrophomonas maltophilia R551-3 NnrS family protein YP_002029779.1 3817062 D 391008 CDS YP_002029780.1 194367170 6476608 complement(3818358..3819722) 1 NC_011071.1 KEGG: xcb:XC_0768 glutamate-cysteine ligase precursor; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; glutamate/cysteine ligase 3819722 6476608 Smal_3398 Stenotrophomonas maltophilia R551-3 glutamate/cysteine ligase YP_002029780.1 3818358 R 391008 CDS YP_002029781.1 194367171 6476609 3819875..3820579 1 NC_011071.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: xom:XOO_3660 nodulin 21-related protein; hypothetical protein 3820579 6476609 Smal_3399 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029781.1 3819875 D 391008 CDS YP_002029782.1 194367172 6476610 3820576..3821400 1 NC_011071.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: xac:XAC0727 transcriptional regulator; AraC family transcriptional regulator 3821400 6476610 Smal_3400 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029782.1 3820576 D 391008 CDS YP_002029783.1 194367173 6476611 3822036..3823010 1 NC_011071.1 PFAM: beta-lactamase domain protein; KEGG: xac:XAC0726 methyl parathion hydrolase; beta-lactamase domain-containing protein 3823010 6476611 Smal_3401 Stenotrophomonas maltophilia R551-3 beta-lactamase domain-containing protein YP_002029783.1 3822036 D 391008 CDS YP_002029784.1 194367174 6476612 complement(3823108..3823716) 1 NC_011071.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 3823716 engB 6476612 engB Stenotrophomonas maltophilia R551-3 ribosome biogenesis GTP-binding protein YsxC YP_002029784.1 3823108 R 391008 CDS YP_002029785.1 194367175 6476613 3823866..3824666 1 NC_011071.1 PFAM: cytochrome c class I; KEGG: xcv:XCV0780 putative cytochrome c precursor; cytochrome c class I 3824666 6476613 Smal_3403 Stenotrophomonas maltophilia R551-3 cytochrome c class I YP_002029785.1 3823866 D 391008 CDS YP_002029786.1 194367176 6476614 3824773..3825423 1 NC_011071.1 PFAM: DSBA oxidoreductase; KEGG: xcb:XC_0765 disulfide oxidoreductase; DSBA oxidoreductase 3825423 6476614 Smal_3404 Stenotrophomonas maltophilia R551-3 DSBA oxidoreductase YP_002029786.1 3824773 D 391008 CDS YP_002029787.1 194367177 6476615 3825530..3826357 1 NC_011071.1 PFAM: DSBA oxidoreductase; KEGG: xcb:XC_0764 thiol:disulfide interchange protein; DSBA oxidoreductase 3826357 6476615 Smal_3405 Stenotrophomonas maltophilia R551-3 DSBA oxidoreductase YP_002029787.1 3825530 D 391008 CDS YP_002029788.1 194367178 6476616 3826411..3827148 1 NC_011071.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0721 hypothetical protein; endonuclease/exonuclease/phosphatase 3827148 6476616 Smal_3406 Stenotrophomonas maltophilia R551-3 endonuclease/exonuclease/phosphatase YP_002029788.1 3826411 D 391008 CDS YP_002029789.1 194367179 6476617 complement(3827280..3828155) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pna:Pnap_4738 protein of unknown function DUF6, transmembrane; hypothetical protein 3828155 6476617 Smal_3407 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029789.1 3827280 R 391008 CDS YP_002029790.1 194367180 6476618 3828228..3828710 1 NC_011071.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: dac:Daci_2839 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3828710 6476618 Smal_3408 Stenotrophomonas maltophilia R551-3 AsnC family transcriptional regulator YP_002029790.1 3828228 D 391008 CDS YP_002029791.1 194367181 6476619 3828788..3829339 1 NC_011071.1 PFAM: Peptidase M23; KEGG: xcb:XC_1354 peptidase; peptidase M23 3829339 6476619 Smal_3409 Stenotrophomonas maltophilia R551-3 peptidase M23 YP_002029791.1 3828788 D 391008 CDS YP_002029792.1 194367182 6476620 3829513..3831657 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3370 outer membrane receptor for ferric iron uptake; TonB-dependent siderophore receptor 3831657 6476620 Smal_3410 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002029792.1 3829513 D 391008 CDS YP_002029793.1 194367183 6476621 complement(3831806..3834667) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3685 TonB-dependent outer membrane receptor; TonB-dependent receptor 3834667 6476621 Smal_3411 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029793.1 3831806 R 391008 CDS YP_002029794.1 194367184 6476622 complement(3835381..3835788) 1 NC_011071.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV0012 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR 3835788 6476622 Smal_3412 Stenotrophomonas maltophilia R551-3 biopolymer transport protein ExbD/TolR YP_002029794.1 3835381 R 391008 CDS YP_002029795.1 194367185 6476623 3835940..3837925 1 NC_011071.1 PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC3561 soluble lytic murein transglycosylase; Lytic transglycosylase 3837925 6476623 Smal_3413 Stenotrophomonas maltophilia R551-3 Lytic transglycosylase YP_002029795.1 3835940 D 391008 CDS YP_002029796.1 194367186 6476624 3838031..3838267 1 NC_011071.1 hypothetical protein 3838267 6476624 Smal_3414 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029796.1 3838031 D 391008 CDS YP_002029797.1 194367187 6476625 3838381..3839601 1 NC_011071.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3839601 cca 6476625 cca Stenotrophomonas maltophilia R551-3 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002029797.1 3838381 D 391008 CDS YP_002029798.1 194367188 6476626 complement(3839671..3840105) 1 NC_011071.1 KEGG: aau:AAur_3333 hypothetical protein; hypothetical protein 3840105 6476626 Smal_3416 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029798.1 3839671 R 391008 CDS YP_002029799.1 194367189 6476627 complement(3840155..3840490) 1 NC_011071.1 KEGG: xom:XOO_3585 hypothetical protein; hypothetical protein 3840490 6476627 Smal_3417 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029799.1 3840155 R 391008 CDS YP_002029800.1 194367190 6476628 complement(3840494..3841528) 1 NC_011071.1 PFAM: peptidase S41; KEGG: xcb:XC_0755 nisin-resistance protein; peptidase S41 3841528 6476628 Smal_3418 Stenotrophomonas maltophilia R551-3 peptidase S41 YP_002029800.1 3840494 R 391008 CDS YP_002029801.1 194367191 6476629 complement(3841810..3844839) 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: atc:AGR_pAT_528 hypothetical protein; outer membrane autotransporter barrel domain-containing protein 3844839 6476629 Smal_3419 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002029801.1 3841810 R 391008 CDS YP_002029802.1 194367192 6476630 complement(3845150..3846217) 1 NC_011071.1 KEGG: ter:Tery_1515 hypothetical protein; hypothetical protein 3846217 6476630 Smal_3420 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029802.1 3845150 R 391008 CDS YP_002029803.1 194367193 6476631 complement(3846217..3847365) 1 NC_011071.1 KEGG: xcb:XC_0754 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3847365 6476631 Smal_3421 Stenotrophomonas maltophilia R551-3 N-acetylglucosamine-6-phosphate deacetylase YP_002029803.1 3846217 R 391008 CDS YP_002029804.1 194367194 6476632 complement(3847365..3848393) 1 NC_011071.1 PFAM: sugar isomerase (SIS); KEGG: xcv:XCV0770 glucosamine-6-phosphate deaminase; glutamine--fructose-6-phosphate transaminase 3848393 6476632 Smal_3422 Stenotrophomonas maltophilia R551-3 glutamine--fructose-6-phosphate transaminase YP_002029804.1 3847365 R 391008 CDS YP_002029805.1 194367195 6476633 complement(3848401..3849501) 1 NC_011071.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xoo:XOO3918 transcriptional regulator LacI family; LacI family transcriptional regulator 3849501 6476633 Smal_3423 Stenotrophomonas maltophilia R551-3 LacI family transcriptional regulator YP_002029805.1 3848401 R 391008 CDS YP_002029806.1 194367196 6476634 complement(3849508..3850797) 1 NC_011071.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_0751 glucose/galactose transporter; glucose/galactose transporter 3850797 6476634 Smal_3424 Stenotrophomonas maltophilia R551-3 glucose/galactose transporter YP_002029806.1 3849508 R 391008 CDS YP_002029807.1 194367197 6476635 3851174..3852193 1 NC_011071.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 3852193 6476635 Smal_3425 Stenotrophomonas maltophilia R551-3 glucokinase YP_002029807.1 3851174 D 391008 CDS YP_002029808.1 194367198 6476636 3852337..3855045 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0292 TonB-dependent receptor; TonB-dependent receptor 3855045 6476636 Smal_3426 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029808.1 3852337 D 391008 CDS YP_002029809.1 194367199 6476637 3855157..3857514 1 NC_011071.1 PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: cak:Caul_0293 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 3857514 6476637 Smal_3427 Stenotrophomonas maltophilia R551-3 beta-N-acetylhexosaminidase YP_002029809.1 3855157 D 391008 CDS YP_002029810.1 194367200 6476638 complement(3857695..3858087) 1 NC_011071.1 PFAM: VanZ family protein; KEGG: xcc:XCC3430 hypothetical protein; VanZ family protein 3858087 6476638 Smal_3428 Stenotrophomonas maltophilia R551-3 VanZ family protein YP_002029810.1 3857695 R 391008 CDS YP_002029811.1 194367201 6476639 complement(3858084..3859268) 1 NC_011071.1 PFAM: protein of unknown function DUF185; KEGG: xcb:XC_0732 hypothetical protein; hypothetical protein 3859268 6476639 Smal_3429 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029811.1 3858084 R 391008 CDS YP_002029812.1 194367202 6476640 3859328..3860065 1 NC_011071.1 Involved in pteridine salvage and antifolate resistance; pteridine reductase 3860065 6476640 Smal_3430 Stenotrophomonas maltophilia R551-3 pteridine reductase YP_002029812.1 3859328 D 391008 CDS YP_002029813.1 194367203 6476641 complement(3860146..3860667) 1 NC_011071.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: xac:XAC0686 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3860667 6476641 Smal_3431 Stenotrophomonas maltophilia R551-3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002029813.1 3860146 R 391008 CDS YP_002029814.1 194367204 6476642 3860723..3861472 1 NC_011071.1 PFAM: 20S proteasome A and B subunits; KEGG: mca:MCA2055 hypothetical protein; 20S proteasome subunits A and B 3861472 6476642 Smal_3432 Stenotrophomonas maltophilia R551-3 20S proteasome subunits A and B YP_002029814.1 3860723 D 391008 CDS YP_002029815.1 194367205 6476643 complement(3861544..3863055) 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_0730 histidine kinase/response regulator hybrid protein; response regulator receiver sensor hybrid histidine kinase 3863055 6476643 Smal_3433 Stenotrophomonas maltophilia R551-3 response regulator receiver sensor hybrid histidine kinase YP_002029815.1 3861544 R 391008 CDS YP_002029816.1 194367206 6476713 complement(3863060..3863500) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xcb:XC_0729 two-component system regulatory protein; response regulator receiver protein 3863500 6476713 Smal_3434 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002029816.1 3863060 R 391008 CDS YP_002029817.1 194367207 6476714 complement(3863497..3865314) 1 NC_011071.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; PAS fold-4 domain protein; KEGG: xcv:XCV0744 two-component system sensor protein; multi-sensor signal transduction histidine kinase 3865314 6476714 Smal_3435 Stenotrophomonas maltophilia R551-3 multi-sensor signal transduction histidine kinase YP_002029817.1 3863497 R 391008 CDS YP_002029818.1 194367208 6476715 complement(3865514..3865897) 1 NC_011071.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: xcv:XCV0743 putative secreted protein; transport-associated protein 3865897 6476715 Smal_3436 Stenotrophomonas maltophilia R551-3 transport-associated protein YP_002029818.1 3865514 R 391008 CDS YP_002029819.1 194367209 6476716 3866069..3867112 1 NC_011071.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bta:790851 similar to ENSANGP00000003307; oxidoreductase domain-containing protein 3867112 6476716 Smal_3437 Stenotrophomonas maltophilia R551-3 oxidoreductase domain-containing protein YP_002029819.1 3866069 D 391008 CDS YP_002029820.1 194367210 6476717 complement(3867448..3868353) 1 NC_011071.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 3868353 6476717 Smal_3438 Stenotrophomonas maltophilia R551-3 6-phosphogluconate dehydrogenase YP_002029820.1 3867448 R 391008 CDS YP_002029821.1 194367211 6476718 complement(3868364..3869602) 1 NC_011071.1 KEGG: xac:XAC0679 hypothetical protein; hypothetical protein 3869602 6476718 Smal_3439 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029821.1 3868364 R 391008 CDS YP_002029822.1 194367212 6476719 complement(3869620..3870222) 1 NC_011071.1 KEGG: xac:XAC0677 hypothetical protein; hypothetical protein 3870222 6476719 Smal_3440 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029822.1 3869620 R 391008 CDS YP_002029823.1 194367213 6476720 complement(3870468..3872645) 1 NC_011071.1 KEGG: xcb:XC_0714 tail-specific protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 3872645 6476720 Smal_3441 Stenotrophomonas maltophilia R551-3 carboxyl-terminal protease YP_002029823.1 3870468 R 391008 CDS YP_002029824.1 194367214 6476721 complement(3872937..3873947) 1 NC_011071.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3873947 6476721 Smal_3442 Stenotrophomonas maltophilia R551-3 lipoyl synthase YP_002029824.1 3872937 R 391008 CDS YP_002029825.1 194367215 6476722 complement(3873966..3874676) 1 NC_011071.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3874676 lipB 6476722 lipB Stenotrophomonas maltophilia R551-3 lipoate-protein ligase B YP_002029825.1 3873966 R 391008 CDS YP_002029826.1 194367216 6476723 complement(3874664..3874942) 1 NC_011071.1 PFAM: protein of unknown function DUF493; KEGG: xom:XOO_3732 hypothetical protein; hypothetical protein 3874942 6476723 Smal_3444 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029826.1 3874664 R 391008 CDS YP_002029827.1 194367217 6476724 3875204..3876277 1 NC_011071.1 KEGG: xcb:XC_0709 hypothetical protein; hypothetical protein 3876277 6476724 Smal_3445 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029827.1 3875204 D 391008 CDS YP_002029828.1 194367218 6476725 complement(3876452..3877672) 1 NC_011071.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: xcv:XCV0725 D-alanyl-D-alanine carboxypeptidase precursor; serine-type D-Ala-D-Ala carboxypeptidase 3877672 6476725 Smal_3446 Stenotrophomonas maltophilia R551-3 serine-type D-Ala-D-Ala carboxypeptidase YP_002029828.1 3876452 R 391008 CDS YP_002029829.1 194367219 6476726 complement(3877773..3879044) 1 NC_011071.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: xcc:XCC3457 rare lipoprotein A; rare lipoprotein A 3879044 6476726 Smal_3447 Stenotrophomonas maltophilia R551-3 rare lipoprotein A YP_002029829.1 3877773 R 391008 CDS YP_002029830.1 194367220 6476727 complement(3879041..3880162) 1 NC_011071.1 TIGRFAM: lytic murein transglycosylase B; KEGG: xcb:XC_0706 membrane-bound lytic transglycosylase; lytic murein transglycosylase B 3880162 6476727 Smal_3448 Stenotrophomonas maltophilia R551-3 lytic murein transglycosylase B YP_002029830.1 3879041 R 391008 CDS YP_002029831.1 194367221 6476728 complement(3881255..3882334) 1 NC_011071.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: xcb:XC_0695 rod shape-determining protein; rod shape-determining protein RodA 3882334 6476728 Smal_3449 Stenotrophomonas maltophilia R551-3 rod shape-determining protein RodA YP_002029831.1 3881255 R 391008 CDS YP_002029832.1 194367222 6476729 complement(3882580..3883692) 1 NC_011071.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: xcb:XC_0695 rod shape-determining protein; rod shape-determining protein RodA 3883692 6476729 Smal_3450 Stenotrophomonas maltophilia R551-3 rod shape-determining protein RodA YP_002029832.1 3882580 R 391008 CDS YP_002029833.1 194367223 6476730 complement(3883689..3885764) 1 NC_011071.1 KEGG: xom:XOO_3745 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3885764 6476730 Smal_3451 Stenotrophomonas maltophilia R551-3 penicillin-binding protein 2 YP_002029833.1 3883689 R 391008 CDS YP_002029834.1 194367224 6476731 complement(3885768..3886253) 1 NC_011071.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: xcb:XC_0693 rod shape-determining protein; rod shape-determining protein MreD 3886253 6476731 Smal_3452 Stenotrophomonas maltophilia R551-3 rod shape-determining protein MreD YP_002029834.1 3885768 R 391008 CDS YP_002029835.1 194367225 6476732 complement(3886250..3887473) 1 NC_011071.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3887473 6476732 Smal_3453 Stenotrophomonas maltophilia R551-3 rod shape-determining protein MreC YP_002029835.1 3886250 R 391008 CDS YP_002029836.1 194367226 6476733 complement(3887595..3888641) 1 NC_011071.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3888641 6476733 Smal_3454 Stenotrophomonas maltophilia R551-3 rod shape-determining protein MreB YP_002029836.1 3887595 R 391008 CDS YP_002029837.1 194367227 6476734 3888925..3889863 1 NC_011071.1 PFAM: PfkB domain protein; KEGG: xcv:XCV0716 putative carbohydrate kinase; PfkB domain-containing protein 3889863 6476734 Smal_3455 Stenotrophomonas maltophilia R551-3 PfkB domain-containing protein YP_002029837.1 3888925 D 391008 CDS YP_002029838.1 194367228 6476735 complement(3889993..3891966) 1 NC_011071.1 PFAM: sulfatase; KEGG: aha:AHA_0492 sulfatase; sulfatase 3891966 6476735 Smal_3456 Stenotrophomonas maltophilia R551-3 sulfatase YP_002029838.1 3889993 R 391008 CDS YP_002029839.1 194367229 6476736 complement(3892252..3892884) 1 NC_011071.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD-superfamily hydrolase 3892884 6476736 Smal_3457 Stenotrophomonas maltophilia R551-3 HAD-superfamily hydrolase YP_002029839.1 3892252 R 391008 CDS YP_002029840.1 194367230 6476737 complement(3892881..3893612) 1 NC_011071.1 KEGG: xcb:XC_0677 hypothetical protein; hypothetical protein 3893612 6476737 Smal_3458 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029840.1 3892881 R 391008 CDS YP_002029841.1 194367231 6476738 complement(3893737..3895665) 1 NC_011071.1 PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: xcb:XC_0676 aminopeptidase; peptidase M1 membrane alanine aminopeptidase 3895665 6476738 Smal_3459 Stenotrophomonas maltophilia R551-3 peptidase M1 membrane alanine aminopeptidase YP_002029841.1 3893737 R 391008 CDS YP_002029842.1 194367232 6476739 complement(3895845..3896606) 1 NC_011071.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 3896606 ubiE 6476739 ubiE Stenotrophomonas maltophilia R551-3 ubiquinone/menaquinone biosynthesis methyltransferase YP_002029842.1 3895845 R 391008 CDS YP_002029843.1 194367233 6476740 3896686..3897138 1 NC_011071.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcb:XC_0670 cytosine deaminase; zinc-binding CMP/dCMP deaminase 3897138 6476740 Smal_3461 Stenotrophomonas maltophilia R551-3 zinc-binding CMP/dCMP deaminase YP_002029843.1 3896686 D 391008 CDS YP_002029844.1 194367234 6476741 3897337..3897594 1 NC_011071.1 hypothetical protein 3897594 6476741 Smal_3462 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029844.1 3897337 D 391008 CDS YP_002029845.1 194367235 6476742 3897669..3897995 1 NC_011071.1 KEGG: xom:XOO_0123 hypothetical protein; hypothetical protein 3897995 6476742 Smal_3463 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029845.1 3897669 D 391008 CDS YP_002029846.1 194367236 6476743 3898069..3898491 1 NC_011071.1 PFAM: protein of unknown function DUF1452; KEGG: azc:AZC_3695 hypothetical protein; hypothetical protein 3898491 6476743 Smal_3464 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029846.1 3898069 D 391008 CDS YP_002029847.1 194367237 6476744 3898611..3899063 1 NC_011071.1 KEGG: xcb:XC_3206 hypothetical protein; hypothetical protein 3899063 6476744 Smal_3465 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029847.1 3898611 D 391008 CDS YP_002029848.1 194367238 6476745 complement(3899195..3900580) 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2383 outer membrane transport protein involved toxic tolerance; NodT family RND efflux system outer membrane lipoprotein 3900580 6476745 Smal_3466 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002029848.1 3899195 R 391008 CDS YP_002029849.1 194367239 6476746 complement(3900706..3903828) 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: har:HEAR2382 aminoglycoside/multidrug efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3903828 6476746 Smal_3467 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002029849.1 3900706 R 391008 CDS YP_002029850.1 194367240 6476747 complement(3903841..3905022) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2381 component of acridine efflux pump; RND family efflux transporter MFP subunit 3905022 6476747 Smal_3468 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002029850.1 3903841 R 391008 CDS YP_002029851.1 194367241 6476748 3905249..3905908 1 NC_011071.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: rfr:Rfer_2067 transcriptional regulator, TetR family; TetR family transcriptional regulator 3905908 6476748 Smal_3469 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029851.1 3905249 D 391008 CDS YP_002029852.1 194367242 6476749 3905954..3906940 1 NC_011071.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: fjo:Fjoh_1312 oxidoreductase domain protein; oxidoreductase domain-containing protein 3906940 6476749 Smal_3470 Stenotrophomonas maltophilia R551-3 oxidoreductase domain-containing protein YP_002029852.1 3905954 D 391008 CDS YP_002029853.1 194367243 6476750 complement(3907170..3908543) 1 NC_011071.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 3908543 hslU 6476750 hslU Stenotrophomonas maltophilia R551-3 ATP-dependent protease ATP-binding subunit HslU YP_002029853.1 3907170 R 391008 CDS YP_002029854.1 194367244 6476751 complement(3908650..3909201) 1 NC_011071.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 3909201 6476751 Smal_3472 Stenotrophomonas maltophilia R551-3 ATP-dependent protease peptidase subunit YP_002029854.1 3908650 R 391008 CDS YP_002029855.1 194367245 6476752 complement(3909375..3909575) 1 NC_011071.1 KEGG: pfl:PFL_2681 hypothetical protein; hypothetical protein 3909575 6476752 Smal_3473 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029855.1 3909375 R 391008 CDS YP_002029856.1 194367246 6476753 complement(3909753..3910643) 1 NC_011071.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3910643 xerC 6476753 xerC Stenotrophomonas maltophilia R551-3 site-specific tyrosine recombinase XerC YP_002029856.1 3909753 R 391008 CDS YP_002029857.1 194367247 6476754 complement(3910657..3911331) 1 NC_011071.1 PFAM: protein of unknown function DUF484; KEGG: xcb:XC_0663 hypothetical protein; hypothetical protein 3911331 6476754 Smal_3475 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029857.1 3910657 R 391008 CDS YP_002029858.1 194367248 6476755 complement(3911328..3912179) 1 NC_011071.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3912179 dapF 6476755 dapF Stenotrophomonas maltophilia R551-3 diaminopimelate epimerase YP_002029858.1 3911328 R 391008 CDS YP_002029859.1 194367249 6476756 complement(3912172..3912444) 1 NC_011071.1 KEGG: xom:XOO_3768 hypothetical protein; hypothetical protein 3912444 6476756 Smal_3477 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029859.1 3912172 R 391008 CDS YP_002029860.1 194367250 6476757 complement(3912573..3912995) 1 NC_011071.1 PFAM: protein of unknown function DUF454; KEGG: xcv:XCV0688 hypothetical protein; hypothetical protein 3912995 6476757 Smal_3478 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029860.1 3912573 R 391008 CDS YP_002029861.1 194367251 6476758 complement(3913051..3915183) 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xom:XOO_3770 protease II; oligopeptidase B 3915183 6476758 Smal_3479 Stenotrophomonas maltophilia R551-3 oligopeptidase B YP_002029861.1 3913051 R 391008 CDS YP_002029862.1 194367252 6476759 3915381..3916565 1 NC_011071.1 PFAM: aminotransferase class I and II; KEGG: xcv:XCV0686 hypothetical protein; hypothetical protein 3916565 6476759 Smal_3480 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029862.1 3915381 D 391008 CDS YP_002029863.1 194367253 6476760 complement(3916685..3918781) 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xcv:XCV0685 putative prolyl oligopeptidase precursor; peptidase S9 prolyl oligopeptidase active site domain-containing protein 3918781 6476760 Smal_3481 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002029863.1 3916685 R 391008 CDS YP_002029864.1 194367254 6476761 complement(3918851..3919177) 1 NC_011071.1 KEGG: xac:XAC0627 hypothetical protein; hypothetical protein 3919177 6476761 Smal_3482 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029864.1 3918851 R 391008 CDS YP_002029865.1 194367255 6476762 3919305..3919907 1 NC_011071.1 PFAM: Lipocalin family protein; KEGG: xcb:XC_0652 outer membrane lipoprotein; lipocalin family protein 3919907 6476762 Smal_3483 Stenotrophomonas maltophilia R551-3 lipocalin family protein YP_002029865.1 3919305 D 391008 CDS YP_002029866.1 194367256 6476763 complement(3919991..3920680) 1 NC_011071.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV3788 D-methionine ABC transporter permease; binding-protein-dependent transport system inner membrane protein 3920680 6476763 Smal_3484 Stenotrophomonas maltophilia R551-3 binding-protein-dependent transport system inner membrane protein YP_002029866.1 3919991 R 391008 CDS YP_002029867.1 194367257 6476764 complement(3920677..3921684) 1 NC_011071.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 3921684 metN 6476764 metN Stenotrophomonas maltophilia R551-3 DL-methionine transporter ATP-binding subunit YP_002029867.1 3920677 R 391008 CDS YP_002029868.1 194367258 6476765 complement(3921895..3922791) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC3670 hypothetical protein; hypothetical protein 3922791 6476765 Smal_3486 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029868.1 3921895 R 391008 CDS YP_002029869.1 194367259 6476766 3922943..3923425 1 NC_011071.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3923425 6476766 Smal_3487 Stenotrophomonas maltophilia R551-3 putative nucleotide-binding protein YP_002029869.1 3922943 D 391008 CDS YP_002029870.1 194367260 6476767 complement(3923534..3924631) 1 NC_011071.1 PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: bam:Bamb_5581 helix-turn-helix, fis-type; Fis family transcriptional regulator 3924631 6476767 Smal_3488 Stenotrophomonas maltophilia R551-3 Fis family transcriptional regulator YP_002029870.1 3923534 R 391008 CDS YP_002029871.1 194367261 6476768 complement(3924838..3925965) 1 NC_011071.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bpt:Bpet1387 aryl-alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 3925965 6476768 Smal_3489 Stenotrophomonas maltophilia R551-3 alcohol dehydrogenase zinc-binding domain-containing protein YP_002029871.1 3924838 R 391008 CDS YP_002029872.1 194367262 6476769 complement(3925983..3927449) 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bpt:Bpet1388 benzaldehyde dehydrogenase II; aldehyde dehydrogenase 3927449 6476769 Smal_3490 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002029872.1 3925983 R 391008 CDS YP_002029873.1 194367263 6476770 3927644..3928210 1 NC_011071.1 PFAM: protein of unknown function DUF1415; KEGG: xom:XOO_0644 hypothetical protein; hypothetical protein 3928210 6476770 Smal_3491 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029873.1 3927644 D 391008 CDS YP_002029874.1 194367264 6476771 3928207..3929010 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_0643 oxidoreductase; short-chain dehydrogenase/reductase SDR 3929010 6476771 Smal_3492 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002029874.1 3928207 D 391008 CDS YP_002029875.1 194367265 6476772 complement(3929082..3931112) 1 NC_011071.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xac:XAC3627 oligopeptidase A; oligopeptidase A 3931112 6476772 Smal_3493 Stenotrophomonas maltophilia R551-3 oligopeptidase A YP_002029875.1 3929082 R 391008 CDS YP_002029876.1 194367266 6476773 3931283..3931687 1 NC_011071.1 hypothetical protein 3931687 6476773 Smal_3494 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029876.1 3931283 D 391008 CDS YP_002029877.1 194367267 6476774 complement(3931789..3932901) 1 NC_011071.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_3655 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 3932901 6476774 Smal_3495 Stenotrophomonas maltophilia R551-3 pyridoxal-5'-phosphate-dependent protein subunit beta YP_002029877.1 3931789 R 391008 CDS YP_002029878.1 194367268 6476775 3933027..3933542 1 NC_011071.1 KEGG: xcb:XC_3658 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3933542 6476775 Smal_3496 Stenotrophomonas maltophilia R551-3 lactoylglutathione lyase YP_002029878.1 3933027 D 391008 CDS YP_002029879.1 194367269 6476776 3933633..3934061 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll1814 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3934061 6476776 Smal_3497 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029879.1 3933633 D 391008 CDS YP_002029880.1 194367270 6476777 complement(3934129..3934560) 1 NC_011071.1 PFAM: CBS domain containing protein; KEGG: nha:Nham_0859 putative transcriptional regulator, XRE family; putative signal transduction protein 3934560 6476777 Smal_3498 Stenotrophomonas maltophilia R551-3 putative signal transduction protein YP_002029880.1 3934129 R 391008 CDS YP_002029881.1 194367271 6476778 complement(3935006..3936844) 1 NC_011071.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3936844 6476778 Smal_3499 Stenotrophomonas maltophilia R551-3 glucosamine--fructose-6-phosphate aminotransferase YP_002029881.1 3935006 R 391008 CDS YP_002029882.1 194367272 6476779 3937057..3938334 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3755 membrane fusion protein; RND family efflux transporter MFP subunit 3938334 6476779 Smal_3500 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002029882.1 3937057 D 391008 CDS YP_002029883.1 194367273 6476780 3938370..3939095 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 3939095 6476780 Smal_3501 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002029883.1 3938370 D 391008 CDS YP_002029884.1 194367274 6476781 3939106..3940404 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease; hypothetical protein 3940404 6476781 Smal_3502 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029884.1 3939106 D 391008 CDS YP_002029885.1 194367275 6476782 3940425..3941642 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3758 ABC transporter permease; hypothetical protein 3941642 6476782 Smal_3503 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029885.1 3940425 D 391008 CDS YP_002029886.1 194367276 6474383 3941644..3942030 1 NC_011071.1 KEGG: xcb:XC_3668 hypothetical protein; hypothetical protein 3942030 6474383 Smal_3504 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029886.1 3941644 D 391008 CDS YP_002029887.1 194367277 6474384 3942151..3943497 1 NC_011071.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcv:XCV3760 two-component system regulatory protein; two component sigma54 specific Fis family transcriptional regulator 3943497 6474384 Smal_3505 Stenotrophomonas maltophilia R551-3 two component sigma54 specific Fis family transcriptional regulator YP_002029887.1 3942151 D 391008 CDS YP_002029888.1 194367278 6474385 3943494..3944846 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: xcv:XCV3761 two-component system sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3944846 6474385 Smal_3506 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002029888.1 3943494 D 391008 CDS YP_002029889.1 194367279 6474386 complement(3944894..3945427) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_2044 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3945427 6474386 Smal_3507 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002029889.1 3944894 R 391008 CDS YP_002029890.1 194367280 6474387 complement(3945396..3946763) 1 NC_011071.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: xac:XAC3644 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 3946763 6474387 Smal_3508 Stenotrophomonas maltophilia R551-3 UDP-N-acetylglucosamine pyrophosphorylase YP_002029890.1 3945396 R 391008 CDS YP_002029891.1 194367281 6474388 3946847..3947230 1 NC_011071.1 PFAM: GtrA family protein; KEGG: xoo:XOO0735 hypothetical protein; GtrA family protein 3947230 6474388 Smal_3509 Stenotrophomonas maltophilia R551-3 GtrA family protein YP_002029891.1 3946847 D 391008 CDS YP_002029892.1 194367282 6474389 complement(3947418..3947840) 1 NC_011071.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3947840 atpC 6474389 atpC Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit epsilon YP_002029892.1 3947418 R 391008 CDS YP_002029893.1 194367283 6474390 complement(3947954..3949360) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3949360 6474390 Smal_3511 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit beta YP_002029893.1 3947954 R 391008 CDS YP_002029894.1 194367284 6474391 complement(3949399..3950262) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3950262 6474391 Smal_3512 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit gamma YP_002029894.1 3949399 R 391008 CDS YP_002029895.1 194367285 6474392 complement(3950341..3951888) 1 NC_011071.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3951888 6474392 Smal_3513 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit alpha YP_002029895.1 3950341 R 391008 CDS YP_002029896.1 194367286 6474393 complement(3951933..3952460) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3952460 6474393 Smal_3514 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit delta YP_002029896.1 3951933 R 391008 CDS YP_002029897.1 194367287 6474394 complement(3952463..3952933) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 3952933 6474394 Smal_3515 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit B YP_002029897.1 3952463 R 391008 CDS YP_002029898.1 194367288 6474395 complement(3953040..3953345) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3953345 6474395 Smal_3516 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit C YP_002029898.1 3953040 R 391008 CDS YP_002029899.1 194367289 6474396 complement(3953419..3954219) 1 NC_011071.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3954219 6474396 Smal_3517 Stenotrophomonas maltophilia R551-3 F0F1 ATP synthase subunit A YP_002029899.1 3953419 R 391008 CDS YP_002029900.1 194367290 6474397 complement(3954250..3954582) 1 NC_011071.1 KEGG: xac:XAC3656 hypothetical protein; hypothetical protein 3954582 6474397 Smal_3518 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029900.1 3954250 R 391008 CDS YP_002029901.1 194367291 6474398 3955078..3955896 1 NC_011071.1 KEGG: xac:XAC3657 hypothetical protein; hypothetical protein 3955896 6474398 Smal_3519 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029901.1 3955078 D 391008 CDS YP_002029902.1 194367292 6474399 complement(3956359..3958167) 1 NC_011071.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: xcc:XCC0544 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 3958167 6474399 Smal_3520 Stenotrophomonas maltophilia R551-3 dihydrolipoamide dehydrogenase YP_002029902.1 3956359 R 391008 CDS YP_002029903.1 194367293 6474400 complement(3958276..3959988) 1 NC_011071.1 KEGG: xcb:XC_3691 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 3959988 6474400 Smal_3521 Stenotrophomonas maltophilia R551-3 dihydrolipoamide acetyltransferase YP_002029903.1 3958276 R 391008 CDS YP_002029904.1 194367294 6474401 complement(3960156..3960671) 1 NC_011071.1 KEGG: xcv:XCV3781 hypothetical protein; hypothetical protein 3960671 6474401 Smal_3522 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029904.1 3960156 R 391008 CDS YP_002029905.1 194367295 6474402 3960858..3961493 1 NC_011071.1 PFAM: OmpW family protein; KEGG: xcb:XC_3694 outer membrane protein; OmpW family protein 3961493 6474402 Smal_3523 Stenotrophomonas maltophilia R551-3 OmpW family protein YP_002029905.1 3960858 D 391008 CDS YP_002029906.1 194367296 6474403 3961681..3963162 1 NC_011071.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3963162 glpD 6474403 glpD Stenotrophomonas maltophilia R551-3 glycerol-3-phosphate dehydrogenase YP_002029906.1 3961681 D 391008 CDS YP_002029907.1 194367297 6474404 3963256..3964755 1 NC_011071.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 3964755 glpK 6474404 glpK Stenotrophomonas maltophilia R551-3 glycerol kinase YP_002029907.1 3963256 D 391008 CDS YP_002029908.1 194367298 6474405 complement(3964825..3965619) 1 NC_011071.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: xcv:XCV3787 outer membrane lipoprotein; lipoprotein 3965619 6474405 Smal_3526 Stenotrophomonas maltophilia R551-3 lipoprotein YP_002029908.1 3964825 R 391008 CDS YP_002029909.1 194367299 6474406 complement(3965646..3966617) 1 NC_011071.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: xcb:XC_0651 hypothetical protein; helix-turn-helix type 11 domain-containing protein 3966617 6474406 Smal_3527 Stenotrophomonas maltophilia R551-3 helix-turn-helix type 11 domain-containing protein YP_002029909.1 3965646 R 391008 CDS YP_002029910.1 194367300 6474407 3966697..3967311 1 NC_011071.1 KEGG: afw:Anae109_0689 hypothetical protein; hypothetical protein 3967311 6474407 Smal_3528 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029910.1 3966697 D 391008 CDS YP_002029911.1 194367301 6474408 3967418..3968194 1 NC_011071.1 PFAM: protein of unknown function DUF481; KEGG: xcb:XC_0650 hypothetical protein; hypothetical protein 3968194 6474408 Smal_3529 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029911.1 3967418 D 391008 CDS YP_002029912.1 194367302 6474409 complement(3968310..3969221) 1 NC_011071.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3969221 hemC 6474409 hemC Stenotrophomonas maltophilia R551-3 porphobilinogen deaminase YP_002029912.1 3968310 R 391008 CDS YP_002029913.1 194367303 6474410 complement(3969807..3970538) 1 NC_011071.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: xcv:XCV0678 two-component system regulatory protein; LytTR family two component transcriptional regulator 3970538 6474410 Smal_3531 Stenotrophomonas maltophilia R551-3 LytTR family two component transcriptional regulator YP_002029913.1 3969807 R 391008 CDS YP_002029914.1 194367304 6474411 complement(3970549..3971565) 1 NC_011071.1 PFAM: histidine kinase internal region; KEGG: xcv:XCV0677 two-component system sensor protein; histidine kinase internal region 3971565 6474411 Smal_3532 Stenotrophomonas maltophilia R551-3 histidine kinase internal region YP_002029914.1 3970549 R 391008 CDS YP_002029915.1 194367305 6474412 complement(3971596..3972255) 1 NC_011071.1 PFAM: phospholipase/Carboxylesterase; KEGG: xcb:XC_0646 carboxylesterase; carboxylesterase 3972255 6474412 Smal_3533 Stenotrophomonas maltophilia R551-3 carboxylesterase YP_002029915.1 3971596 R 391008 CDS YP_002029916.1 194367306 6474413 complement(3972306..3974231) 1 NC_011071.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3974231 6474413 Smal_3534 Stenotrophomonas maltophilia R551-3 glucosyltransferase MdoH YP_002029916.1 3972306 R 391008 CDS YP_002029917.1 194367307 6474414 3974725..3976770 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_5169 iron-regulated outer membrane virulence protein; TonB-dependent receptor 3976770 6474414 Smal_3535 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029917.1 3974725 D 391008 CDS YP_002029918.1 194367308 6474415 3977219..3977605 1 NC_011071.1 KEGG: xcb:XC_4312 hypothetical protein; hypothetical protein 3977605 6474415 Smal_3536 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029918.1 3977219 D 391008 CDS YP_002029919.1 194367309 6474416 complement(3977702..3980233) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xac:XAC1899 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3980233 6474416 Smal_3537 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002029919.1 3977702 R 391008 CDS YP_002029920.1 194367310 6474417 complement(3980443..3981336) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: atc:AGR_C_3001 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 3981336 6474417 Smal_3538 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002029920.1 3980443 R 391008 CDS YP_002029921.1 194367311 6474418 complement(3981435..3982331) 1 NC_011071.1 PFAM: peptidase S41; KEGG: mmr:Mmar10_0061 peptidase S41; peptidase S41 3982331 6474418 Smal_3539 Stenotrophomonas maltophilia R551-3 peptidase S41 YP_002029921.1 3981435 R 391008 CDS YP_002029922.1 194367312 6474419 3982396..3982860 1 NC_011071.1 PFAM: regulatory protein MarR; KEGG: xcb:XC_0601 transcriptional regulator MarR family; regulatory protein MarR 3982860 6474419 Smal_3540 Stenotrophomonas maltophilia R551-3 regulatory protein MarR YP_002029922.1 3982396 D 391008 CDS YP_002029923.1 194367313 6474420 complement(3982866..3984350) 1 NC_011071.1 KEGG: amr:AM1_5781 hypothetical protein; hypothetical protein 3984350 6474420 Smal_3541 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029923.1 3982866 R 391008 CDS YP_002029924.1 194367314 6474421 3984559..3985815 1 NC_011071.1 PFAM: peptidase M24; KEGG: mab:MAB_1399 probable peptidase; peptidase M24 3985815 6474421 Smal_3542 Stenotrophomonas maltophilia R551-3 peptidase M24 YP_002029924.1 3984559 D 391008 CDS YP_002029925.1 194367315 6474422 3985808..3986482 1 NC_011071.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: mab:MAB_1400 probable transcriptional regulator, TetR; transcriptional regulator TetR 3986482 6474422 Smal_3543 Stenotrophomonas maltophilia R551-3 transcriptional regulator TetR YP_002029925.1 3985808 D 391008 CDS YP_002029926.1 194367316 6474423 3986619..3986918 1 NC_011071.1 KEGG: mar:MAE_44440 hypothetical protein; hypothetical protein 3986918 6474423 Smal_3544 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029926.1 3986619 D 391008 CDS YP_002029927.1 194367317 6474424 complement(3986930..3988402) 1 NC_011071.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2490 drug transporter; EmrB/QacA subfamily drug resistance transporter 3988402 6474424 Smal_3545 Stenotrophomonas maltophilia R551-3 EmrB/QacA subfamily drug resistance transporter YP_002029927.1 3986930 R 391008 CDS YP_002029928.1 194367318 6474425 3988528..3989148 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0024 transcriptional regulator, TetR family; TetR family transcriptional regulator 3989148 6474425 Smal_3546 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002029928.1 3988528 D 391008 CDS YP_002029929.1 194367319 6474426 complement(3989164..3989514) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_3564 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3989514 6474426 Smal_3547 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002029929.1 3989164 R 391008 CDS YP_002029930.1 194367320 6474427 complement(3989620..3989820) 1 NC_011071.1 hypothetical protein 3989820 6474427 Smal_3548 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029930.1 3989620 R 391008 CDS YP_002029931.1 194367321 6474428 3990009..3993386 1 NC_011071.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: spe:Spro_4738 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 3993386 6474428 Smal_3549 Stenotrophomonas maltophilia R551-3 outer membrane autotransporter barrel domain-containing protein YP_002029931.1 3990009 D 391008 CDS YP_002029932.1 194367322 6474429 complement(3993458..3994645) 1 NC_011071.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_3862 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3994645 6474429 Smal_3550 Stenotrophomonas maltophilia R551-3 Bcr/CflA subfamily drug resistance transporter YP_002029932.1 3993458 R 391008 CDS YP_002029933.1 194367323 6474430 complement(3994844..3995749) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_3071 transcriptional regulator, LysR family; LysR family transcriptional regulator 3995749 6474430 Smal_3551 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002029933.1 3994844 R 391008 CDS YP_002029934.1 194367324 6474431 3995857..3997392 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_3582 major facilitator superfamily MFS_1; major facilitator superfamily protein 3997392 6474431 Smal_3552 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002029934.1 3995857 D 391008 CDS YP_002029935.1 194367325 6474432 3997383..3997811 1 NC_011071.1 hypothetical protein 3997811 6474432 Smal_3553 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029935.1 3997383 D 391008 CDS YP_002029936.1 194367326 6474433 3997823..3999532 1 NC_011071.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: xcb:XC_3515 penicillin-binding protein 3; peptidoglycan glycosyltransferase 3999532 6474433 Smal_3554 Stenotrophomonas maltophilia R551-3 peptidoglycan glycosyltransferase YP_002029936.1 3997823 D 391008 CDS YP_002029937.1 194367327 6474434 complement(3999612..4000064) 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: xcv:XCV1420 hypothetical protein; hypothetical protein 4000064 6474434 Smal_3555 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029937.1 3999612 R 391008 CDS YP_002029938.1 194367328 6474435 4000620..4003454 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3444 TonB-dependent receptor; TonB-dependent receptor 4003454 6474435 Smal_3556 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002029938.1 4000620 D 391008 CDS YP_002029939.1 194367329 6474436 4003712..4004734 1 NC_011071.1 KEGG: dol:Dole_0232 hypothetical protein; hypothetical protein 4004734 6474436 Smal_3557 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029939.1 4003712 D 391008 CDS YP_002029940.1 194367330 6474437 complement(4004743..4005636) 1 NC_011071.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppu:PP_4853 hypothetical protein; hypothetical protein 4005636 6474437 Smal_3558 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029940.1 4004743 R 391008 CDS YP_002029941.1 194367331 6474438 4005701..4006504 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ppu:PP_4852 transcriptional regulator, AraC family; AraC family transcriptional regulator 4006504 6474438 Smal_3559 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002029941.1 4005701 D 391008 CDS YP_002029942.1 194367332 6474439 4006591..4007232 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: bja:blr6664 glutathione S-transferase; glutathione S-transferase domain-containing protein 4007232 6474439 Smal_3560 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002029942.1 4006591 D 391008 CDS YP_002029943.1 194367333 6474440 complement(4007254..4007661) 1 NC_011071.1 KEGG: pat:Patl_2444 hypothetical protein; hypothetical protein 4007661 6474440 Smal_3561 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029943.1 4007254 R 391008 CDS YP_002029944.1 194367334 6474441 complement(4007711..4008130) 1 NC_011071.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: xcv:XCV3693 putative DNA-binding protein; histone family protein nucleoid-structuring protein H-NS 4008130 6474441 Smal_3562 Stenotrophomonas maltophilia R551-3 histone family protein nucleoid-structuring protein H-NS YP_002029944.1 4007711 R 391008 CDS YP_002029945.1 194367335 6474442 4008249..4008641 1 NC_011071.1 PFAM: DoxX family protein; KEGG: neu:NE1546 hypothetical protein; DoxX family protein 4008641 6474442 Smal_3563 Stenotrophomonas maltophilia R551-3 DoxX family protein YP_002029945.1 4008249 D 391008 CDS YP_002029946.1 194367336 6474443 complement(4008666..4009352) 1 NC_011071.1 KEGG: sdn:Sden_1211 hypothetical protein; hypothetical protein 4009352 6474443 Smal_3564 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029946.1 4008666 R 391008 CDS YP_002029947.1 194367337 6474444 complement(4009413..4010039) 1 NC_011071.1 hypothetical protein 4010039 6474444 Smal_3565 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029947.1 4009413 R 391008 CDS YP_002029948.1 194367338 6474445 complement(4010224..4012470) 1 NC_011071.1 KEGG: rsh:Rsph17029_3224 hypothetical protein; hypothetical protein 4012470 6474445 Smal_3566 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029948.1 4010224 R 391008 CDS YP_002029949.1 194367339 6474446 complement(4012879..4014693) 1 NC_011071.1 KEGG: lpc:LPC_2168 hypothetical protein; OLD family ATP-dependent endonuclease-like protein 4014693 6474446 Smal_3567 Stenotrophomonas maltophilia R551-3 OLD family ATP-dependent endonuclease-like protein YP_002029949.1 4012879 R 391008 CDS YP_002029950.1 194367340 6474447 4015645..4018029 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_4344 integrase, catalytic region; integrase catalytic subunit 4018029 6474447 Smal_3568 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002029950.1 4015645 D 391008 CDS YP_002029951.1 194367341 6474448 4018026..4019042 1 NC_011071.1 SMART: AAA ATPase; KEGG: bvi:Bcep1808_4343 AAA ATPase; ATPase AAA 4019042 6474448 Smal_3569 Stenotrophomonas maltophilia R551-3 ATPase AAA YP_002029951.1 4018026 D 391008 CDS YP_002029952.1 194367342 6474449 4019039..4020256 1 NC_011071.1 KEGG: bmu:Bmul_4717 hypothetical protein; hypothetical protein 4020256 6474449 Smal_3570 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029952.1 4019039 D 391008 CDS YP_002029953.1 194367343 6474451 complement(4022438..4023844) 1 NC_011071.1 PFAM: HipA domain protein; KEGG: xcb:XC_0544 hypothetical protein; hypothetical protein 4023844 6474451 Smal_3571 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029953.1 4022438 R 391008 CDS YP_002029954.1 194367344 6474452 complement(4024096..4025952) 1 NC_011071.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 4025952 6474452 Smal_3572 Stenotrophomonas maltophilia R551-3 RNA polymerase sigma factor RpoD YP_002029954.1 4024096 R 391008 CDS YP_002029955.1 194367345 6474453 complement(4026043..4026483) 1 NC_011071.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4026483 6474453 Smal_3573 Stenotrophomonas maltophilia R551-3 D-tyrosyl-tRNA(Tyr) deacylase YP_002029955.1 4026043 R 391008 CDS YP_002029956.1 194367346 6474454 4026545..4027465 1 NC_011071.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 4027465 6474454 Smal_3574 Stenotrophomonas maltophilia R551-3 lipid A biosynthesis lauroyl acyltransferase YP_002029956.1 4026545 D 391008 CDS YP_002029957.1 194367347 6474455 4027541..4028674 1 NC_011071.1 catalyzes the formation of formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine from GTP; GTP cyclohydrolase 4028674 6474455 Smal_3575 Stenotrophomonas maltophilia R551-3 GTP cyclohydrolase YP_002029957.1 4027541 D 391008 CDS YP_002029958.1 194367348 6474456 4028702..4029250 1 NC_011071.1 PFAM: membrane-flanked domain; KEGG: xcb:XC_3811 hypothetical protein; membrane-flanked domain-containing protein 4029250 6474456 Smal_3576 Stenotrophomonas maltophilia R551-3 membrane-flanked domain-containing protein YP_002029958.1 4028702 D 391008 CDS YP_002029959.1 194367349 6474457 4029247..4030785 1 NC_011071.1 PFAM: membrane-flanked domain; KEGG: xac:XAC3794 hypothetical protein; membrane-flanked domain-containing protein 4030785 6474457 Smal_3577 Stenotrophomonas maltophilia R551-3 membrane-flanked domain-containing protein YP_002029959.1 4029247 D 391008 CDS YP_002029960.1 194367350 6474458 complement(4030862..4031917) 1 NC_011071.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: xcb:XC_3813 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 4031917 6474458 Smal_3578 Stenotrophomonas maltophilia R551-3 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_002029960.1 4030862 R 391008 CDS YP_002029961.1 194367351 6474459 4031919..4032737 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: xcv:XCV3921 lipopolysaccharide core biosynthesis glycosyltransferase; family 2 glycosyl transferase 4032737 6474459 Smal_3579 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002029961.1 4031919 D 391008 CDS YP_002029962.1 194367352 6474460 4032782..4033903 1 NC_011071.1 PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet4596 putative glycosylttransferase; group 1 glycosyl transferase 4033903 6474460 Smal_3580 Stenotrophomonas maltophilia R551-3 group 1 glycosyl transferase YP_002029962.1 4032782 D 391008 CDS YP_002029963.1 194367353 6474461 complement(4033876..4035165) 1 NC_011071.1 PFAM: O-antigen polymerase; KEGG: bpt:Bpet4837 LPS ligase-like protein; O-antigen polymerase 4035165 6474461 Smal_3581 Stenotrophomonas maltophilia R551-3 O-antigen polymerase YP_002029963.1 4033876 R 391008 CDS YP_002029964.1 194367354 6474462 complement(4035283..4037004) 1 NC_011071.1 PFAM: glycosyl transferase family 39; KEGG: xcb:XC_3816 hypothetical protein; glycosyl transferase family protein 4037004 6474462 Smal_3582 Stenotrophomonas maltophilia R551-3 glycosyl transferase family protein YP_002029964.1 4035283 R 391008 CDS YP_002029965.1 194367355 6474463 complement(4037028..4038359) 1 NC_011071.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: xcb:XC_3817 Sun protein; sun protein 4038359 6474463 Smal_3583 Stenotrophomonas maltophilia R551-3 sun protein YP_002029965.1 4037028 R 391008 CDS YP_002029966.1 194367356 6474464 complement(4038363..4039286) 1 NC_011071.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 4039286 fmt 6474464 fmt Stenotrophomonas maltophilia R551-3 methionyl-tRNA formyltransferase YP_002029966.1 4038363 R 391008 CDS YP_002029967.1 194367357 6474465 complement(4039408..4039920) 1 NC_011071.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4039920 def 6474465 def Stenotrophomonas maltophilia R551-3 peptide deformylase YP_002029967.1 4039408 R 391008 CDS YP_002029968.1 194367358 6474466 4040047..4041180 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; KEGG: xcb:XC_3820 hypothetical protein; peptidoglycan-binding LysM 4041180 6474466 Smal_3586 Stenotrophomonas maltophilia R551-3 peptidoglycan-binding LysM YP_002029968.1 4040047 D 391008 CDS YP_002029969.1 194367359 6474467 4041311..4042438 1 NC_011071.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: xac:XAC3803 DNA processing chain A; DNA protecting protein DprA 4042438 6474467 Smal_3587 Stenotrophomonas maltophilia R551-3 DNA protecting protein DprA YP_002029969.1 4041311 D 391008 CDS YP_002029970.1 194367360 6474468 4042482..4042955 1 NC_011071.1 PFAM: protein of unknown function DUF494; KEGG: xcb:XC_3822 hypothetical protein; hypothetical protein 4042955 6474468 Smal_3588 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029970.1 4042482 D 391008 CDS YP_002029971.1 194367361 6474469 4042995..4043753 1 NC_011071.1 PFAM: Fimbrial protein pilin; KEGG: xcv:XCV3930 PilA-related fimbrial protein; fimbrial protein pilin 4043753 6474469 Smal_3589 Stenotrophomonas maltophilia R551-3 fimbrial protein pilin YP_002029971.1 4042995 D 391008 CDS YP_002029972.1 194367362 6474470 4043803..4044735 1 NC_011071.1 PFAM: RDD domain containing protein; KEGG: xcb:XC_3824 hypothetical protein; RDD domain-containing protein 4044735 6474470 Smal_3590 Stenotrophomonas maltophilia R551-3 RDD domain-containing protein YP_002029972.1 4043803 D 391008 CDS YP_002029973.1 194367363 6474471 4044928..4047402 1 NC_011071.1 decatenates replicating daughter chromosomes; DNA topoisomerase I 4047402 6474471 Smal_3591 Stenotrophomonas maltophilia R551-3 DNA topoisomerase I YP_002029973.1 4044928 D 391008 CDS YP_002029974.1 194367364 6474472 4047534..4048124 1 NC_011071.1 PFAM: SUA5/yciO/yrdC domain; KEGG: xcv:XCV3933 SUA5/YciO/YrdC family protein; SUA5/yciO/yrdC domain 4048124 6474472 Smal_3592 Stenotrophomonas maltophilia R551-3 SUA5/yciO/yrdC domain YP_002029974.1 4047534 D 391008 CDS YP_002029975.1 194367365 6474473 4048168..4048857 1 NC_011071.1 KEGG: xom:XOO_0538 hypothetical protein; hypothetical protein 4048857 6474473 Smal_3593 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029975.1 4048168 D 391008 CDS YP_002029976.1 194367366 6474474 4048893..4049633 1 NC_011071.1 KEGG: xcb:XC_3828 hypothetical protein; hypothetical protein 4049633 6474474 Smal_3594 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029976.1 4048893 D 391008 CDS YP_002029977.1 194367367 6474475 complement(4049727..4050503) 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_0536 tropinone reductase; tropinone reductase 4050503 6474475 Smal_3595 Stenotrophomonas maltophilia R551-3 tropinone reductase YP_002029977.1 4049727 R 391008 CDS YP_002029978.1 194367368 6474476 4050615..4050827 1 NC_011071.1 KEGG: xcb:XC_3831 hypothetical protein; hypothetical protein 4050827 6474476 Smal_3596 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029978.1 4050615 D 391008 CDS YP_002029979.1 194367369 6474477 complement(4050942..4052864) 1 NC_011071.1 KEGG: xcb:XC_3832 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type 4052864 6474477 Smal_3597 Stenotrophomonas maltophilia R551-3 signal peptide peptidase SppA, 67K type YP_002029979.1 4050942 R 391008 CDS YP_002029980.1 194367370 6474478 complement(4052981..4054345) 1 NC_011071.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 4054345 6474478 Smal_3598 Stenotrophomonas maltophilia R551-3 multidrug efflux protein YP_002029980.1 4052981 R 391008 CDS YP_002029981.1 194367371 6474479 complement(4054584..4055159) 1 NC_011071.1 KEGG: xcb:XC_3834 hypothetical protein; hypothetical protein 4055159 6474479 Smal_3599 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029981.1 4054584 R 391008 CDS YP_002029982.1 194367372 6474480 complement(4055152..4056156) 1 NC_011071.1 KEGG: xac:XAC3817 hypothetical protein; hypothetical protein 4056156 6474480 Smal_3600 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029982.1 4055152 R 391008 CDS YP_002029983.1 194367373 6474481 4056549..4058747 1 NC_011071.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4058747 6474481 Smal_3601 Stenotrophomonas maltophilia R551-3 primosome assembly protein PriA YP_002029983.1 4056549 D 391008 CDS YP_002029984.1 194367374 6474482 complement(4058842..4059462) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xac:XAC3819 glutathione S-transferase; glutathione S-transferase domain-containing protein 4059462 6474482 Smal_3602 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002029984.1 4058842 R 391008 CDS YP_002029985.1 194367375 6474483 complement(4059606..4060385) 1 NC_011071.1 PFAM: protein of unknown function DUF88; KEGG: xcb:XC_3839 hypothetical protein; hypothetical protein 4060385 6474483 Smal_3603 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029985.1 4059606 R 391008 CDS YP_002029986.1 194367376 6474484 4060508..4061788 1 NC_011071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: xac:XAC3822 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4061788 6474484 Smal_3604 Stenotrophomonas maltophilia R551-3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002029986.1 4060508 D 391008 CDS YP_002029987.1 194367377 6474485 complement(4061880..4062332) 1 NC_011071.1 hypothetical protein 4062332 6474485 Smal_3605 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029987.1 4061880 R 391008 CDS YP_002029988.1 194367378 6474486 complement(4062337..4062768) 1 NC_011071.1 KEGG: ccr:CC_0846 hypothetical protein; hypothetical protein 4062768 6474486 Smal_3606 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029988.1 4062337 R 391008 CDS YP_002029989.1 194367379 6474487 complement(4062838..4063257) 1 NC_011071.1 hypothetical protein 4063257 6474487 Smal_3607 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029989.1 4062838 R 391008 CDS YP_002029990.1 194367380 6474488 complement(4063330..4063596) 1 NC_011071.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: xcb:XC_1086 hypothetical protein; GIY-YIG nuclease superfamily protein 4063596 6474488 Smal_3608 Stenotrophomonas maltophilia R551-3 GIY-YIG nuclease superfamily protein YP_002029990.1 4063330 R 391008 CDS YP_002029991.1 194367381 6474489 4063928..4064545 1 NC_011071.1 PFAM: protein of unknown function UPF0126; KEGG: pfo:PflO1_0516 hypothetical protein; hypothetical protein 4064545 6474489 Smal_3609 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029991.1 4063928 D 391008 CDS YP_002029992.1 194367382 6474490 4064831..4065997 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bpa:BPP3959 HlyD family secretion protein; RND family efflux transporter MFP subunit 4065997 6474490 Smal_3610 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002029992.1 4064831 D 391008 CDS YP_002029993.1 194367383 6474491 4065994..4069128 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: ote:Oter_1123 acriflavin resistance protein; acriflavin resistance protein 4069128 6474491 Smal_3611 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002029993.1 4065994 D 391008 CDS YP_002029994.1 194367384 6474492 4069125..4072184 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: ote:Oter_1122 acriflavin resistance protein; acriflavin resistance protein 4072184 6474492 Smal_3612 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002029994.1 4069125 D 391008 CDS YP_002029995.1 194367385 6474493 complement(4072228..4072539) 1 NC_011071.1 KEGG: ccr:CC_3710 hypothetical protein; hypothetical protein 4072539 6474493 Smal_3613 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029995.1 4072228 R 391008 CDS YP_002029996.1 194367386 6474494 complement(4072992..4074065) 1 NC_011071.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 4074065 6474494 Smal_3614 Stenotrophomonas maltophilia R551-3 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002029996.1 4072992 R 391008 CDS YP_002029997.1 194367387 6474495 complement(4074361..4074618) 1 NC_011071.1 hypothetical protein 4074618 6474495 Smal_3615 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029997.1 4074361 R 391008 CDS YP_002029998.1 194367388 6474496 complement(4074731..4075069) 1 NC_011071.1 KEGG: met:M446_4995 hypothetical protein; hypothetical protein 4075069 6474496 Smal_3616 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029998.1 4074731 R 391008 CDS YP_002029999.1 194367389 6474497 complement(4075121..4075867) 1 NC_011071.1 KEGG: rru:Rru_A1610 hypothetical protein; hypothetical protein 4075867 6474497 Smal_3617 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002029999.1 4075121 R 391008 CDS YP_002030000.1 194367390 6474498 complement(4075864..4076367) 1 NC_011071.1 PFAM: regulatory protein MarR; KEGG: oan:Oant_0083 transcriptional regulator, MarR family; MarR family transcriptional regulator 4076367 6474498 Smal_3618 Stenotrophomonas maltophilia R551-3 MarR family transcriptional regulator YP_002030000.1 4075864 R 391008 CDS YP_002030001.1 194367391 6474499 complement(4076437..4077735) 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ccr:CC_1181 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4077735 6474499 Smal_3619 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002030001.1 4076437 R 391008 CDS YP_002030002.1 194367392 6474500 complement(4077768..4078475) 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC_1182 DNA-binding response regulator; winged helix family two component transcriptional regulator 4078475 6474500 Smal_3620 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002030002.1 4077768 R 391008 CDS YP_002030003.1 194367393 6474501 4078583..4079509 1 NC_011071.1 KEGG: cak:Caul_2763 peptidase A2A retrovirus catalytic; hypothetical protein 4079509 6474501 Smal_3621 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030003.1 4078583 D 391008 CDS YP_002030004.1 194367394 6474502 complement(4079537..4080565) 1 NC_011071.1 PFAM: Luciferase-like monooxygenase; KEGG: pae:PA1186 hypothetical protein; luciferase-like monooxygenase 4080565 6474502 Smal_3622 Stenotrophomonas maltophilia R551-3 luciferase-like monooxygenase YP_002030004.1 4079537 R 391008 CDS YP_002030005.1 194367395 6474503 complement(4080579..4081214) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: pau:PA14_49100 probable glutathione S-transferase; glutathione S-transferase domain-containing protein 4081214 6474503 Smal_3623 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002030005.1 4080579 R 391008 CDS YP_002030006.1 194367396 6474504 4081463..4082350 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_4195 probable transcriptional regulator; LysR family transcriptional regulator 4082350 6474504 Smal_3624 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002030006.1 4081463 D 391008 CDS YP_002030007.1 194367397 6474505 complement(4082381..4082992) 1 NC_011071.1 KEGG: rpe:RPE_0079 hypothetical protein; hypothetical protein 4082992 6474505 Smal_3625 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030007.1 4082381 R 391008 CDS YP_002030008.1 194367398 6474506 complement(4083126..4084775) 1 NC_011071.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4084775 groEL 6474506 groEL Stenotrophomonas maltophilia R551-3 chaperonin GroEL YP_002030008.1 4083126 R 391008 CDS YP_002030009.1 194367399 6474507 complement(4084857..4085144) 1 NC_011071.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4085144 groES 6474507 groES Stenotrophomonas maltophilia R551-3 co-chaperonin GroES YP_002030009.1 4084857 R 391008 CDS YP_002030010.1 194367400 6474508 4085496..4087286 1 NC_011071.1 PFAM: Endonuclease I; KEGG: xcv:XCV0569 putative extracellular ribonuclease; endonuclease I 4087286 6474508 Smal_3628 Stenotrophomonas maltophilia R551-3 endonuclease I YP_002030010.1 4085496 D 391008 CDS YP_002030011.1 194367401 6474509 4087355..4087693 1 NC_011071.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: xom:XOO_0525 periplasmic divalent cation tolerance protein; CutA1 divalent ion tolerance protein 4087693 6474509 Smal_3629 Stenotrophomonas maltophilia R551-3 CutA1 divalent ion tolerance protein YP_002030011.1 4087355 D 391008 CDS YP_002030012.1 194367402 6474510 4087690..4090074 1 NC_011071.1 KEGG: xac:XAC0534 C-type cytochrome biogenesis protein (copper tolerance); C-type cytochrome biogenesis protein 4090074 6474510 Smal_3630 Stenotrophomonas maltophilia R551-3 C-type cytochrome biogenesis protein YP_002030012.1 4087690 D 391008 CDS YP_002030013.1 194367403 6474511 4090071..4090634 1 NC_011071.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_I1165 thioredoxin family protein, putative; alkyl hydroperoxide reductase 4090634 6474511 Smal_3631 Stenotrophomonas maltophilia R551-3 alkyl hydroperoxide reductase YP_002030013.1 4090071 D 391008 CDS YP_002030014.1 194367404 6474512 4091274..4093796 1 NC_011071.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: xoo:XOO0407 iron-uptake factor; flavodoxin/nitric oxide synthase 4093796 6474512 Smal_3632 Stenotrophomonas maltophilia R551-3 flavodoxin/nitric oxide synthase YP_002030014.1 4091274 D 391008 CDS YP_002030015.1 194367405 6474513 complement(4093875..4096412) 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcb:XC_2320 chemotaxis protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 4096412 6474513 Smal_3633 Stenotrophomonas maltophilia R551-3 Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer YP_002030015.1 4093875 R 391008 CDS YP_002030016.1 194367406 6474514 4096615..4097454 1 NC_011071.1 PFAM: N-acetyltransferase; KEGG: pmy:Pmen_3693 N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 4097454 6474514 Smal_3634 Stenotrophomonas maltophilia R551-3 N-hydroxyarylamine O-acetyltransferase YP_002030016.1 4096615 D 391008 CDS YP_002030017.1 194367407 6474515 complement(4097521..4097892) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: oan:Oant_4164 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 4097892 6474515 Smal_3635 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002030017.1 4097521 R 391008 CDS YP_002030018.1 194367408 6474516 4097975..4098691 1 NC_011071.1 SMART: extracellular solute-binding protein family 3; KEGG: met:M446_1628 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 4098691 6474516 Smal_3636 Stenotrophomonas maltophilia R551-3 family 3 extracellular solute-binding protein YP_002030018.1 4097975 D 391008 CDS YP_002030019.1 194367409 6474517 complement(4098726..4099625) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3853 B-lactamase regulatory protein; LysR family transcriptional regulator 4099625 6474517 Smal_3637 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002030019.1 4098726 R 391008 CDS YP_002030020.1 194367410 6474518 complement(4099900..4101447) 1 NC_011071.1 PFAM: Alkaline phosphatase; KEGG: mfa:Mfla_0451 alkaline phosphatase; alkaline phosphatase 4101447 6474518 Smal_3638 Stenotrophomonas maltophilia R551-3 alkaline phosphatase YP_002030020.1 4099900 R 391008 CDS YP_002030021.1 194367411 6474519 complement(4101584..4102333) 1 NC_011071.1 KEGG: pfo:PflO1_3820 hypothetical protein; hypothetical protein 4102333 6474519 Smal_3639 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030021.1 4101584 R 391008 CDS YP_002030022.1 194367412 6474520 4102398..4103294 1 NC_011071.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bmn:BMA10247_A1242 D-alanyl-D-alanine carboxypeptidase family protein; serine-type D-Ala-D-Ala carboxypeptidase 4103294 6474520 Smal_3640 Stenotrophomonas maltophilia R551-3 serine-type D-Ala-D-Ala carboxypeptidase YP_002030022.1 4102398 D 391008 CDS YP_002030023.1 194367413 6474521 complement(4103300..4103893) 1 NC_011071.1 PFAM: regulatory protein TetR; KEGG: rru:Rru_A3067 transcriptional regulator, TetR family; TetR family transcriptional regulator 4103893 6474521 Smal_3641 Stenotrophomonas maltophilia R551-3 TetR family transcriptional regulator YP_002030023.1 4103300 R 391008 CDS YP_002030024.1 194367414 6474522 complement(4103909..4104505) 1 NC_011071.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rru:Rru_A3066 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4104505 6474522 Smal_3642 Stenotrophomonas maltophilia R551-3 NAD(P)H dehydrogenase (quinone) YP_002030024.1 4103909 R 391008 CDS YP_002030025.1 194367415 6474523 4104632..4105162 1 NC_011071.1 hypothetical protein 4105162 6474523 Smal_3643 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030025.1 4104632 D 391008 CDS YP_002030026.1 194367416 6474524 complement(4105237..4106067) 1 NC_011071.1 KEGG: dac:Daci_4222 hypothetical protein; hypothetical protein 4106067 6474524 Smal_3644 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030026.1 4105237 R 391008 CDS YP_002030027.1 194367417 6474525 4106236..4106976 1 NC_011071.1 PFAM: Dopa 45-dioxygenase; KEGG: bra:BRADO4842 hypothetical protein; Dopa 45-dioxygenase 4106976 6474525 Smal_3645 Stenotrophomonas maltophilia R551-3 Dopa 45-dioxygenase YP_002030027.1 4106236 D 391008 CDS YP_002030028.1 194367418 6474526 4107291..4107740 1 NC_011071.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4107740 6474526 Smal_3646 Stenotrophomonas maltophilia R551-3 3-dehydroquinate dehydratase YP_002030028.1 4107291 D 391008 CDS YP_002030029.1 194367419 6474527 4107740..4108162 1 NC_011071.1 PFAM: protein of unknown function DUF1311; KEGG: atc:AGR_C_4360 hypothetical protein; hypothetical protein 4108162 6474527 Smal_3647 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030029.1 4107740 D 391008 CDS YP_002030030.1 194367420 6474528 4108216..4108695 1 NC_011071.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 4108695 6474528 Smal_3648 Stenotrophomonas maltophilia R551-3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002030030.1 4108216 D 391008 CDS YP_002030031.1 194367421 6474529 4108706..4110073 1 NC_011071.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 4110073 6474529 Smal_3649 Stenotrophomonas maltophilia R551-3 acetyl-CoA carboxylase biotin carboxylase subunit YP_002030031.1 4108706 D 391008 CDS YP_002030032.1 194367422 6474530 complement(4110209..4110583) 1 NC_011071.1 KEGG: xcb:XC_0526 hypothetical protein; hypothetical protein 4110583 6474530 Smal_3650 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030032.1 4110209 R 391008 CDS YP_002030033.1 194367423 6474531 complement(4110580..4111542) 1 NC_011071.1 KEGG: xcb:XC_0525 hypothetical protein; hypothetical protein 4111542 6474531 Smal_3651 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030033.1 4110580 R 391008 CDS YP_002030034.1 194367424 6474532 4111707..4112627 1 NC_011071.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4112627 prmA 6474532 prmA Stenotrophomonas maltophilia R551-3 50S ribosomal protein L11 methyltransferase YP_002030034.1 4111707 D 391008 CDS YP_002030035.1 194367425 6474533 4112838..4113437 1 NC_011071.1 KEGG: xcv:XCV0557 hypothetical protein; hypothetical protein 4113437 6474533 Smal_3653 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030035.1 4112838 D 391008 CDS YP_002030036.1 194367426 6474534 4113553..4113828 1 NC_011071.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4113828 fis 6474534 fis Stenotrophomonas maltophilia R551-3 DNA-binding protein Fis YP_002030036.1 4113553 D 391008 CDS YP_002030037.1 194367427 6474535 complement(4113957..4114952) 1 NC_011071.1 PFAM: phosphatidate cytidylyltransferase; KEGG: xcv:XCV0555 putative phosphatidate cytidiltransferase; phosphatidate cytidylyltransferase 4114952 6474535 Smal_3655 Stenotrophomonas maltophilia R551-3 phosphatidate cytidylyltransferase YP_002030037.1 4113957 R 391008 CDS YP_002030038.1 194367428 6474536 complement(4114949..4115581) 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: xcb:XC_0517 acyltransferase; phospholipid/glycerol acyltransferase 4115581 6474536 Smal_3656 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002030038.1 4114949 R 391008 CDS YP_002030039.1 194367429 6474537 complement(4115591..4116028) 1 NC_011071.1 KEGG: xcb:XC_0514 hypothetical protein; hypothetical protein 4116028 6474537 Smal_3657 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030039.1 4115591 R 391008 CDS YP_002030040.1 194367430 6474538 complement(4116025..4117359) 1 NC_011071.1 PFAM: phosphoesterase PA-phosphatase related; Dual specificity protein phosphatase; KEGG: xac:XAC0516 hypothetical protein; putative dual specificity phosphatase 4117359 6474538 Smal_3658 Stenotrophomonas maltophilia R551-3 putative dual specificity phosphatase YP_002030040.1 4116025 R 391008 CDS YP_002030041.1 194367431 6474539 complement(4117359..4119110) 1 NC_011071.1 KEGG: xcb:XC_0512 hypothetical protein; hypothetical protein 4119110 6474539 Smal_3659 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030041.1 4117359 R 391008 CDS YP_002030042.1 194367432 6474540 complement(4119145..4119762) 1 NC_011071.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xcv:XCV0548 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 4119762 6474540 Smal_3660 Stenotrophomonas maltophilia R551-3 CDP-alcohol phosphatidyltransferase YP_002030042.1 4119145 R 391008 CDS YP_002030043.1 194367433 6474541 complement(4119809..4120432) 1 NC_011071.1 KEGG: pfl:PFL_3957 hypothetical protein; hypothetical protein 4120432 6474541 Smal_3661 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030043.1 4119809 R 391008 CDS YP_002030044.1 194367434 6474542 4120617..4122200 1 NC_011071.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4122200 purH 6474542 purH Stenotrophomonas maltophilia R551-3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002030044.1 4120617 D 391008 CDS YP_002030045.1 194367435 6474543 4122217..4123086 1 NC_011071.1 KEGG: xac:XAC0512 hypothetical protein; hypothetical protein 4123086 6474543 Smal_3663 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030045.1 4122217 D 391008 CDS YP_002030046.1 194367436 6474544 4123101..4124132 1 NC_011071.1 KEGG: rpb:RPB_3721 putative DNA-binding protein; putative DNA-binding protein 4124132 6474544 Smal_3664 Stenotrophomonas maltophilia R551-3 putative DNA-binding protein YP_002030046.1 4123101 D 391008 CDS YP_002030047.1 194367437 6474545 4124192..4125478 1 NC_011071.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4125478 6474545 Smal_3665 Stenotrophomonas maltophilia R551-3 phosphoribosylamine--glycine ligase YP_002030047.1 4124192 D 391008 CDS YP_002030048.1 194367438 6474546 complement(4125977..4126852) 1 NC_011071.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4126852 6474546 Smal_3666 Stenotrophomonas maltophilia R551-3 RNA polymerase factor sigma-32 YP_002030048.1 4125977 R 391008 CDS YP_002030049.1 194367439 6474547 4127210..4127602 1 NC_011071.1 PFAM: Penicillinase repressor; KEGG: sdn:Sden_0578 penicillinase repressor; CopY family transcriptional repressor 4127602 6474547 Smal_3667 Stenotrophomonas maltophilia R551-3 CopY family transcriptional repressor YP_002030049.1 4127210 D 391008 CDS YP_002030050.1 194367440 6474548 4127599..4129128 1 NC_011071.1 PFAM: Ankyrin; peptidase M56 BlaR1; KEGG: sdn:Sden_0579 peptidase M56, BlaR1; peptidase M56 BlaR1 4129128 6474548 Smal_3668 Stenotrophomonas maltophilia R551-3 peptidase M56 BlaR1 YP_002030050.1 4127599 D 391008 CDS YP_002030051.1 194367441 6474549 4129256..4130779 1 NC_011071.1 PFAM: beta-lactamase; KEGG: sus:Acid_1314 beta-lactamase; beta-lactamase 4130779 6474549 Smal_3669 Stenotrophomonas maltophilia R551-3 beta-lactamase YP_002030051.1 4129256 D 391008 CDS YP_002030052.1 194367442 6474550 complement(4130832..4131545) 1 NC_011071.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4131545 6474550 Smal_3670 Stenotrophomonas maltophilia R551-3 uracil-DNA glycosylase YP_002030052.1 4130832 R 391008 CDS YP_002030053.1 194367443 6474551 complement(4131542..4132384) 1 NC_011071.1 PFAM: response regulator receiver; KEGG: xcv:XCV3951 two-component system response regulator; response regulator receiver protein 4132384 6474551 Smal_3671 Stenotrophomonas maltophilia R551-3 response regulator receiver protein YP_002030053.1 4131542 R 391008 CDS YP_002030054.1 194367444 6474552 complement(4132392..4133339) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3952 cell division protein FtsX; hypothetical protein 4133339 6474552 Smal_3672 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030054.1 4132392 R 391008 CDS YP_002030055.1 194367445 6474553 complement(4133342..4134028) 1 NC_011071.1 KEGG: xac:XAC3828 ABC transporter ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4134028 6474553 Smal_3673 Stenotrophomonas maltophilia R551-3 cell division ATP-binding protein FtsE YP_002030055.1 4133342 R 391008 CDS YP_002030056.1 194367446 6474554 complement(4134225..4135949) 1 NC_011071.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4135949 6474554 Smal_3674 Stenotrophomonas maltophilia R551-3 ATP-dependent RNA helicase RhlB YP_002030056.1 4134225 R 391008 CDS YP_002030057.1 194367447 6474555 4136460..4136789 1 NC_011071.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcb:XC_3849 thioredoxin; thioredoxin 4136789 6474555 Smal_3675 Stenotrophomonas maltophilia R551-3 thioredoxin YP_002030057.1 4136460 D 391008 CDS YP_002030058.1 194367448 6474556 4137022..4138773 1 NC_011071.1 KEGG: xfn:XfasM23_2158 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho 4138773 6474556 Smal_3676 Stenotrophomonas maltophilia R551-3 transcription termination factor Rho YP_002030058.1 4137022 D 391008 CDS YP_002030059.1 194367449 6474557 4138988..4140562 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppg:PputGB1_2050 diguanylate cyclase; diguanylate cyclase 4140562 6474557 Smal_3677 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002030059.1 4138988 D 391008 CDS YP_002030060.1 194367450 6474558 complement(4140597..4141484) 1 NC_011071.1 TIGRFAM: TonB family protein; KEGG: xcb:XC_3851 hypothetical protein; TonB family protein 4141484 6474558 Smal_3678 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002030060.1 4140597 R 391008 CDS YP_002030061.1 194367451 6474559 complement(4141551..4143281) 1 NC_011071.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4143281 aceK 6474559 aceK Stenotrophomonas maltophilia R551-3 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_002030061.1 4141551 R 391008 CDS YP_002030062.1 194367452 6474560 complement(4143428..4143787) 1 NC_011071.1 KEGG: dac:Daci_0558 hypothetical protein; hypothetical protein 4143787 6474560 Smal_3680 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030062.1 4143428 R 391008 CDS YP_002030063.1 194367453 6474561 complement(4143841..4144257) 1 NC_011071.1 PFAM: Roadblock/LC7 family protein; KEGG: ace:Acel_1325 roadblock/LC7 family protein; Roadblock/LC7 family protein 4144257 6474561 Smal_3681 Stenotrophomonas maltophilia R551-3 Roadblock/LC7 family protein YP_002030063.1 4143841 R 391008 CDS YP_002030064.1 194367454 6474562 complement(4144250..4144798) 1 NC_011071.1 PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: dac:Daci_0776 protein of unknown function ATP binding; hypothetical protein 4144798 6474562 Smal_3682 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030064.1 4144250 R 391008 CDS YP_002030065.1 194367455 6474563 complement(4144791..4145756) 1 NC_011071.1 hypothetical protein 4145756 6474563 Smal_3683 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030065.1 4144791 R 391008 CDS YP_002030066.1 194367456 6474564 complement(4146071..4148293) 1 NC_011071.1 KEGG: xcv:XCV3960 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 4148293 6474564 Smal_3684 Stenotrophomonas maltophilia R551-3 isocitrate dehydrogenase YP_002030066.1 4146071 R 391008 CDS YP_002030067.1 194367457 6474565 complement(4148667..4149176) 1 NC_011071.1 KEGG: xac:XAC3844 hypothetical protein; hypothetical protein 4149176 6474565 Smal_3685 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030067.1 4148667 R 391008 CDS YP_002030068.1 194367458 6474566 complement(4149219..4149512) 1 NC_011071.1 PFAM: Peptidoglycan-binding LysM; KEGG: xcb:XC_3856 hypothetical protein; peptidoglycan-binding LysM 4149512 6474566 Smal_3686 Stenotrophomonas maltophilia R551-3 peptidoglycan-binding LysM YP_002030068.1 4149219 R 391008 CDS YP_002030069.1 194367459 6474567 complement(4149810..4150628) 1 NC_011071.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 4150628 queF 6474567 queF Stenotrophomonas maltophilia R551-3 7-cyano-7-deazaguanine reductase YP_002030069.1 4149810 R 391008 CDS YP_002030070.1 194367460 6474568 complement(4151167..4152486) 1 NC_011071.1 KEGG: xcb:XC_3858 N-acyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 4152486 6474568 Smal_3688 Stenotrophomonas maltophilia R551-3 amidohydrolase YP_002030070.1 4151167 R 391008 CDS YP_002030071.1 194367461 6474569 4152673..4153917 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC3848 membrane fusion protein precursor; RND family efflux transporter MFP subunit 4153917 6474569 Smal_3689 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002030071.1 4152673 D 391008 CDS YP_002030072.1 194367462 6474570 4153992..4157225 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xcb:XC_3860 acriflavin resistance protein; acriflavin resistance protein 4157225 6474570 Smal_3690 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002030072.1 4153992 D 391008 CDS YP_002030073.1 194367463 6474571 4157254..4160379 1 NC_011071.1 PFAM: acriflavin resistance protein; KEGG: xcc:XCC3789 acriflavin resistance protein; acriflavin resistance protein 4160379 6474571 Smal_3691 Stenotrophomonas maltophilia R551-3 acriflavin resistance protein YP_002030073.1 4157254 D 391008 CDS YP_002030074.1 194367464 6474572 4160768..4162825 1 NC_011071.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD1163 putative ferric siderophore receptor protein; TonB-dependent siderophore receptor 4162825 6474572 Smal_3692 Stenotrophomonas maltophilia R551-3 TonB-dependent siderophore receptor YP_002030074.1 4160768 D 391008 CDS YP_002030075.1 194367465 6474573 4162988..4165165 1 NC_011071.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: xac:XAC0510 hypothetical protein; YccS/YhfK family integral membrane protein 4165165 6474573 Smal_3693 Stenotrophomonas maltophilia R551-3 YccS/YhfK family integral membrane protein YP_002030075.1 4162988 D 391008 CDS YP_002030076.1 194367466 6474574 4165286..4166080 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_3901 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4166080 6474574 Smal_3694 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002030076.1 4165286 D 391008 CDS YP_002030077.1 194367467 6474575 4166178..4168067 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: xcb:XC_0505 2-acylglycerophosphoethanolamine acyltransferase; phospholipid/glycerol acyltransferase 4168067 6474575 Smal_3695 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002030077.1 4166178 D 391008 CDS YP_002030078.1 194367468 6474576 4168250..4168537 1 NC_011071.1 PFAM: Interferon-induced transmembrane protein; KEGG: pca:Pcar_0370 hypothetical protein; interferon-induced transmembrane protein 4168537 6474576 Smal_3696 Stenotrophomonas maltophilia R551-3 interferon-induced transmembrane protein YP_002030078.1 4168250 D 391008 CDS YP_002030079.1 194367469 6474577 4168572..4168850 1 NC_011071.1 PFAM: Interferon-induced transmembrane protein; KEGG: mva:Mvan_4718 hypothetical protein; interferon-induced transmembrane protein 4168850 6474577 Smal_3697 Stenotrophomonas maltophilia R551-3 interferon-induced transmembrane protein YP_002030079.1 4168572 D 391008 CDS YP_002030080.1 194367470 6474578 4168894..4169319 1 NC_011071.1 KEGG: xac:XAC0505 hypothetical protein; hypothetical protein 4169319 6474578 Smal_3698 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030080.1 4168894 D 391008 CDS YP_002030081.1 194367471 6474579 complement(4169794..4170681) 1 NC_011071.1 KEGG: xcb:XC_0502 transmembrane protein; signaling modulator of AmpD, AmpE 4170681 6474579 Smal_3699 Stenotrophomonas maltophilia R551-3 signaling modulator of AmpD, AmpE YP_002030081.1 4169794 R 391008 CDS YP_002030082.1 194367472 6474580 complement(4170828..4171733) 1 NC_011071.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: xac:XAC0503 NADH pyrophosphatase; NUDIX hydrolase 4171733 6474580 Smal_3700 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002030082.1 4170828 R 391008 CDS YP_002030083.1 194367473 6474581 complement(4171852..4172244) 1 NC_011071.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 4172244 6474581 Smal_3701 Stenotrophomonas maltophilia R551-3 iron-sulfur cluster insertion protein ErpA YP_002030083.1 4171852 R 391008 CDS YP_002030084.1 194367474 6474582 complement(4172276..4172740) 1 NC_011071.1 PFAM: protein of unknown function DUF583; KEGG: xcv:XCV0533 hypothetical protein; hypothetical protein 4172740 6474582 Smal_3702 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030084.1 4172276 R 391008 CDS YP_002030085.1 194367475 6474583 complement(4172745..4173488) 1 NC_011071.1 KEGG: xcb:XC_0498 hypothetical protein; hypothetical protein 4173488 6474583 Smal_3703 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030085.1 4172745 R 391008 CDS YP_002030086.1 194367476 6474584 4173668..4174285 1 NC_011071.1 KEGG: xcv:XCV0531 hypothetical protein; hypothetical protein 4174285 6474584 Smal_3704 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030086.1 4173668 D 391008 CDS YP_002030087.1 194367477 6474585 4174330..4176216 1 NC_011071.1 PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xom:XOO_0483 two-component system regulatory protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4176216 6474585 Smal_3705 Stenotrophomonas maltophilia R551-3 response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_002030087.1 4174330 D 391008 CDS YP_002030088.1 194367478 6474586 4176218..4178434 1 NC_011071.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: xcb:XC_0495 two-component system sensor protein; Hpt sensor hybrid histidine kinase 4178434 6474586 Smal_3706 Stenotrophomonas maltophilia R551-3 Hpt sensor hybrid histidine kinase YP_002030088.1 4176218 D 391008 CDS YP_002030089.1 194367479 6474587 complement(4178493..4178963) 1 NC_011071.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: xcb:XC_0494 bacterioferritin; bacterioferritin 4178963 6474587 Smal_3707 Stenotrophomonas maltophilia R551-3 bacterioferritin YP_002030089.1 4178493 R 391008 CDS YP_002030090.1 194367480 6474588 complement(4179108..4179317) 1 NC_011071.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: xcv:XCV0526 bacterioferritin-associated ferredoxin; BFD (2Fe-2S)-binding domain-containing protein 4179317 6474588 Smal_3708 Stenotrophomonas maltophilia R551-3 BFD (2Fe-2S)-binding domain-containing protein YP_002030090.1 4179108 R 391008 CDS YP_002030091.1 194367481 6474589 complement(4179426..4180046) 1 NC_011071.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 4180046 6474589 Smal_3709 Stenotrophomonas maltophilia R551-3 dinucleoside polyphosphate hydrolase YP_002030091.1 4179426 R 391008 CDS YP_002030092.1 194367482 6474592 complement(4180667..4181059) 1 NC_011071.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4181059 rpsI 6474592 rpsI Stenotrophomonas maltophilia R551-3 30S ribosomal protein S9 YP_002030092.1 4180667 R 391008 CDS YP_002030093.1 194367483 6474593 complement(4181062..4181490) 1 NC_011071.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4181490 rplM 6474593 rplM Stenotrophomonas maltophilia R551-3 50S ribosomal protein L13 YP_002030093.1 4181062 R 391008 CDS YP_002030094.1 194367484 6474594 4181687..4182331 1 NC_011071.1 KEGG: xom:XOO_3930 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 4182331 6474594 Smal_3712 Stenotrophomonas maltophilia R551-3 ubiquinone biosynthesis protein YP_002030094.1 4181687 D 391008 CDS YP_002030095.1 194367485 6474595 complement(4182429..4182749) 1 NC_011071.1 PFAM: small multidrug resistance protein; KEGG: xcb:XC_0488 SugE protein; small multidrug resistance protein 4182749 6474595 Smal_3713 Stenotrophomonas maltophilia R551-3 small multidrug resistance protein YP_002030095.1 4182429 R 391008 CDS YP_002030096.1 194367486 6474596 complement(4182917..4183711) 1 NC_011071.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 4183711 6474596 Smal_3714 Stenotrophomonas maltophilia R551-3 S-adenosylmethionine decarboxylase YP_002030096.1 4182917 R 391008 CDS YP_002030097.1 194367487 6474597 4183861..4184550 1 NC_011071.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4184550 6474597 Smal_3715 Stenotrophomonas maltophilia R551-3 cAMP-regulatory protein YP_002030097.1 4183861 D 391008 CDS YP_002030098.1 194367488 6474598 4184690..4185451 1 NC_011071.1 PFAM: protein of unknown function DUF81; KEGG: nmu:Nmul_A2681 protein of unknown function DUF81; hypothetical protein 4185451 6474598 Smal_3716 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030098.1 4184690 D 391008 CDS YP_002030099.1 194367489 6474599 complement(4185540..4186256) 1 NC_011071.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xac:XAC0482 hypothetical protein; haloacid dehalogenase domain-containing protein hydrolase 4186256 6474599 Smal_3717 Stenotrophomonas maltophilia R551-3 haloacid dehalogenase domain-containing protein hydrolase YP_002030099.1 4185540 R 391008 CDS YP_002030100.1 194367490 6474600 complement(4186253..4187047) 1 NC_011071.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 4187047 trpC 6474600 trpC Stenotrophomonas maltophilia R551-3 indole-3-glycerol-phosphate synthase YP_002030100.1 4186253 R 391008 CDS YP_002030101.1 194367491 6474601 complement(4187122..4188153) 1 NC_011071.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4188153 trpD 6474601 trpD Stenotrophomonas maltophilia R551-3 anthranilate phosphoribosyltransferase YP_002030101.1 4187122 R 391008 CDS YP_002030102.1 194367492 6474602 complement(4188170..4188757) 1 NC_011071.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 4188757 6474602 Smal_3720 Stenotrophomonas maltophilia R551-3 anthranilate synthase component II YP_002030102.1 4188170 R 391008 CDS YP_002030103.1 194367493 6474603 complement(4188760..4189539) 1 NC_011071.1 PFAM: protein of unknown function DUF541; KEGG: xcv:XCV0507 putative secreted protein; hypothetical protein 4189539 6474603 Smal_3721 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030103.1 4188760 R 391008 CDS YP_002030104.1 194367494 6474604 complement(4189607..4191082) 1 NC_011071.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 4191082 6474604 Smal_3722 Stenotrophomonas maltophilia R551-3 anthranilate synthase component I YP_002030104.1 4189607 R 391008 CDS YP_002030105.1 194367495 6474605 complement(4191375..4192328) 1 NC_011071.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 4192328 6474605 Smal_3723 Stenotrophomonas maltophilia R551-3 lipid kinase YP_002030105.1 4191375 R 391008 CDS YP_002030106.1 194367496 6474606 complement(4192611..4193093) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05438 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 4193093 6474606 Smal_3724 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002030106.1 4192611 R 391008 CDS YP_002030107.1 194367497 6474607 complement(4193152..4193826) 1 NC_011071.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 4193826 6474607 Smal_3725 Stenotrophomonas maltophilia R551-3 ribulose-phosphate 3-epimerase YP_002030107.1 4193152 R 391008 CDS YP_002030108.1 194367498 6474608 complement(4193857..4194222) 1 NC_011071.1 PFAM: heat shock protein DnaJ domain protein; KEGG: xoo:XOO4053 hypothetical protein; heat shock protein DnaJ domain-containing protein 4194222 6474608 Smal_3726 Stenotrophomonas maltophilia R551-3 heat shock protein DnaJ domain-containing protein YP_002030108.1 4193857 R 391008 CDS YP_002030109.1 194367499 6474609 4194328..4195254 1 NC_011071.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4195254 6474609 Smal_3727 Stenotrophomonas maltophilia R551-3 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002030109.1 4194328 D 391008 CDS YP_002030110.1 194367500 6474610 4195475..4195960 1 NC_011071.1 PFAM: protein of unknown function DUF962; KEGG: xcb:XC_0462 hypothetical protein; hypothetical protein 4195960 6474610 Smal_3728 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030110.1 4195475 D 391008 CDS YP_002030111.1 194367501 6474611 4196294..4199125 1 NC_011071.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 4199125 6474611 Smal_3729 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit A YP_002030111.1 4196294 D 391008 CDS YP_002030112.1 194367502 6474612 4199125..4199517 1 NC_011071.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 4199517 6474612 Smal_3730 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit C YP_002030112.1 4199125 D 391008 CDS YP_002030113.1 194367503 6474613 4199514..4201049 1 NC_011071.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 4201049 6474613 Smal_3731 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit D YP_002030113.1 4199514 D 391008 CDS YP_002030114.1 194367504 6474614 4201046..4201552 1 NC_011071.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 4201552 6474614 Smal_3732 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit E YP_002030114.1 4201046 D 391008 CDS YP_002030115.1 194367505 6474615 4201549..4201833 1 NC_011071.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 4201833 6474615 Smal_3733 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit F YP_002030115.1 4201549 D 391008 CDS YP_002030116.1 194367506 6474616 4201830..4202219 1 NC_011071.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 4202219 6474616 Smal_3734 Stenotrophomonas maltophilia R551-3 putative monovalent cation/H+ antiporter subunit G YP_002030116.1 4201830 D 391008 CDS YP_002030117.1 194367507 6474617 complement(4202588..4203553) 1 NC_011071.1 PFAM: sodium/calcium exchanger membrane region; KEGG: wsu:WS2173 hypothetical protein; sodium/calcium exchanger membrane protein 4203553 6474617 Smal_3735 Stenotrophomonas maltophilia R551-3 sodium/calcium exchanger membrane protein YP_002030117.1 4202588 R 391008 CDS YP_002030118.1 194367508 6474618 complement(4203627..4204280) 1 NC_011071.1 KEGG: xcb:XC_0453 hypothetical protein; hypothetical protein 4204280 6474618 Smal_3736 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030118.1 4203627 R 391008 CDS YP_002030119.1 194367509 6474619 4204406..4204945 1 NC_011071.1 KEGG: xcb:XC_0454 hypothetical protein; hypothetical protein 4204945 6474619 Smal_3737 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030119.1 4204406 D 391008 CDS YP_002030120.1 194367510 6474620 complement(4205028..4206326) 1 NC_011071.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 4206326 6474620 Smal_3738 Stenotrophomonas maltophilia R551-3 homogentisate 1,2-dioxygenase YP_002030120.1 4205028 R 391008 CDS YP_002030121.1 194367511 6474621 complement(4206429..4207499) 1 NC_011071.1 KEGG: xac:XAC0452 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 4207499 6474621 Smal_3739 Stenotrophomonas maltophilia R551-3 4-hydroxyphenylpyruvate dioxygenase YP_002030121.1 4206429 R 391008 CDS YP_002030122.1 194367512 6474622 4207671..4208165 1 NC_011071.1 PFAM: regulatory protein MarR; KEGG: xac:XAC0451 transcriptional regulator MarR/EmrR family; MarR family transcriptional regulator 4208165 6474622 Smal_3740 Stenotrophomonas maltophilia R551-3 MarR family transcriptional regulator YP_002030122.1 4207671 D 391008 CDS YP_002030123.1 194367513 6474623 4208394..4209365 1 NC_011071.1 PFAM: protein of unknown function DUF1016; KEGG: rme:Rmet_1237 protein of unknown function DUF1016; hypothetical protein 4209365 6474623 Smal_3741 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030123.1 4208394 D 391008 CDS YP_002030124.1 194367514 6474624 complement(4209384..4210523) 1 NC_011071.1 KEGG: bpt:Bpet1310 hypothetical protein; hypothetical protein 4210523 6474624 Smal_3742 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030124.1 4209384 R 391008 CDS YP_002030125.1 194367515 6474625 complement(4210776..4211375) 1 NC_011071.1 KEGG: xcv:XCV0480 putative thioredoxin; putative thioredoxin 4211375 6474625 Smal_3743 Stenotrophomonas maltophilia R551-3 putative thioredoxin YP_002030125.1 4210776 R 391008 CDS YP_002030126.1 194367516 6474626 complement(4211395..4212894) 1 NC_011071.1 KEGG: xcv:XCV0479 proton-dependent oligopeptide transporter family protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 4212894 6474626 Smal_3744 Stenotrophomonas maltophilia R551-3 amino acid/peptide transporter YP_002030126.1 4211395 R 391008 CDS YP_002030127.1 194367517 6474627 complement(4213075..4213950) 1 NC_011071.1 PFAM: tryptophan 23-dioxygenase; KEGG: xcb:XC_0446 tryptophan 2,3-dioxygenase; tryptophan 23-dioxygenase 4213950 6474627 Smal_3745 Stenotrophomonas maltophilia R551-3 tryptophan 23-dioxygenase YP_002030127.1 4213075 R 391008 CDS YP_002030128.1 194367518 6474628 4214286..4215368 1 NC_011071.1 KEGG: xcb:XC_0444 pyruvate dehydrogenase E1 alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 4215368 6474628 Smal_3746 Stenotrophomonas maltophilia R551-3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_002030128.1 4214286 D 391008 CDS YP_002030129.1 194367519 6474629 4215361..4216428 1 NC_011071.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: xcv:XCV0475 putative pyruvate dehydrogenase E1 component; transketolase central region 4216428 6474629 Smal_3747 Stenotrophomonas maltophilia R551-3 transketolase central region YP_002030129.1 4215361 D 391008 CDS YP_002030130.1 194367520 6474630 4216430..4216783 1 NC_011071.1 PFAM: SH3 domain protein; Variant SH3 domain protein; KEGG: xcv:XCV0474 hypothetical protein; Variant SH3 domain-containing protein 4216783 6474630 Smal_3748 Stenotrophomonas maltophilia R551-3 Variant SH3 domain-containing protein YP_002030130.1 4216430 D 391008 CDS YP_002030131.1 194367521 6474631 4216780..4218168 1 NC_011071.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: xac:XAC0443 branched-chain alpha-keto acid dehydrogenase subunit E2; branched-chain alpha-keto acid dehydrogenase subunit E2 4218168 6474631 Smal_3749 Stenotrophomonas maltophilia R551-3 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_002030131.1 4216780 D 391008 CDS YP_002030132.1 194367522 6474632 4218474..4219424 1 NC_011071.1 hypothetical protein 4219424 6474632 Smal_3750 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030132.1 4218474 D 391008 CDS YP_002030133.1 194367523 6474633 complement(4219461..4219847) 1 NC_011071.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_4163 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 4219847 6474633 Smal_3751 Stenotrophomonas maltophilia R551-3 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002030133.1 4219461 R 391008 CDS YP_002030134.1 194367524 6474634 complement(4220091..4220798) 1 NC_011071.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: bpt:Bpet1599 hypothetical protein; helix-turn-helix type 11 domain-containing protein 4220798 6474634 Smal_3752 Stenotrophomonas maltophilia R551-3 helix-turn-helix type 11 domain-containing protein YP_002030134.1 4220091 R 391008 CDS YP_002030135.1 194367525 6474635 complement(4220798..4221433) 1 NC_011071.1 PFAM: Semialdehyde dehydrogenase NAD - binding; NAD-dependent epimerase/dehydratase; KEGG: xac:XAC0432 hypothetical protein; NAD-dependent epimerase/dehydratase 4221433 6474635 Smal_3753 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002030135.1 4220798 R 391008 CDS YP_002030136.1 194367526 6474636 4221540..4223078 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcb:XC_0420 hypothetical protein; diguanylate cyclase 4223078 6474636 Smal_3754 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002030136.1 4221540 D 391008 CDS YP_002030137.1 194367527 6474637 complement(4223186..4224112) 1 NC_011071.1 PFAM: protein of unknown function DUF808; KEGG: xcb:XC_0418 hypothetical protein; hypothetical protein 4224112 6474637 Smal_3755 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030137.1 4223186 R 391008 CDS YP_002030138.1 194367528 6474638 4224278..4225969 1 NC_011071.1 PFAM: ABC-1 domain protein; KEGG: xcb:XC_0417 ABC transporter substrate binding protein; ABC-1 domain-containing protein 4225969 6474638 Smal_3756 Stenotrophomonas maltophilia R551-3 ABC-1 domain-containing protein YP_002030138.1 4224278 D 391008 CDS YP_002030139.1 194367529 6474639 4226211..4228316 1 NC_011071.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4228316 6474639 Smal_3757 Stenotrophomonas maltophilia R551-3 phosphoglycerol transferase I YP_002030139.1 4226211 D 391008 CDS YP_002030140.1 194367530 6474640 complement(4228940..4231369) 1 NC_011071.1 PFAM: MscS Mechanosensitive ion channel; KEGG: xac:XAC0420 hypothetical protein; mechanosensitive ion channel MscS 4231369 6474640 Smal_3758 Stenotrophomonas maltophilia R551-3 mechanosensitive ion channel MscS YP_002030140.1 4228940 R 391008 CDS YP_002030141.1 194367531 6474641 complement(4231457..4231705) 1 NC_011071.1 hypothetical protein 4231705 6474641 Smal_3759 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030141.1 4231457 R 391008 CDS YP_002030142.1 194367532 6474642 4231888..4232382 1 NC_011071.1 PFAM: Lipocalin family protein; KEGG: xac:XAC3956 outer membrane lipoprotein Blc; lipocalin family protein 4232382 6474642 Smal_3760 Stenotrophomonas maltophilia R551-3 lipocalin family protein YP_002030142.1 4231888 D 391008 CDS YP_002030143.1 194367533 6474643 4232396..4233604 1 NC_011071.1 PFAM: FAD dependent oxidoreductase; KEGG: xac:XAC2051 oxidoreductase; FAD dependent oxidoreductase 4233604 6474643 Smal_3761 Stenotrophomonas maltophilia R551-3 FAD dependent oxidoreductase YP_002030143.1 4232396 D 391008 CDS YP_002030144.1 194367534 6474644 4233731..4234213 1 NC_011071.1 KEGG: xcb:XC_1161 hypothetical protein; hypothetical protein 4234213 6474644 Smal_3762 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030144.1 4233731 D 391008 CDS YP_002030145.1 194367535 6474645 complement(4234298..4234732) 1 NC_011071.1 KEGG: xcb:XC_0025 hypothetical protein; hypothetical protein 4234732 6474645 Smal_3763 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030145.1 4234298 R 391008 CDS YP_002030146.1 194367536 6474646 4234884..4235174 1 NC_011071.1 KEGG: psa:PST_0852 predicted membrane protein; membrane protein 4235174 6474646 Smal_3764 Stenotrophomonas maltophilia R551-3 membrane protein YP_002030146.1 4234884 D 391008 CDS YP_002030147.1 194367537 6474647 4235174..4235833 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pla:Plav_0928 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 4235833 6474647 Smal_3765 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002030147.1 4235174 D 391008 CDS YP_002030148.1 194367538 6474648 4235830..4237149 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: mmr:Mmar10_0937 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4237149 6474648 Smal_3766 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002030148.1 4235830 D 391008 CDS YP_002030149.1 194367539 6474649 complement(4237693..4238013) 1 NC_011071.1 KEGG: par:Psyc_1584 hypothetical protein; hypothetical protein 4238013 6474649 Smal_3767 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030149.1 4237693 R 391008 CDS YP_002030150.1 194367540 6474650 complement(4238057..4239946) 1 NC_011071.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 4239946 6474650 Smal_3768 Stenotrophomonas maltophilia R551-3 arginine decarboxylase YP_002030150.1 4238057 R 391008 CDS YP_002030151.1 194367541 6474651 4240138..4240989 1 NC_011071.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4240989 6474651 Smal_3769 Stenotrophomonas maltophilia R551-3 spermidine synthase YP_002030151.1 4240138 D 391008 CDS YP_002030152.1 194367542 6474652 complement(4241108..4242016) 1 NC_011071.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: xcb:XC_0394 aspartyl/asparaginyl beta-hydroxylase; Aspartyl/Asparaginyl beta-hydroxylase 4242016 6474652 Smal_3770 Stenotrophomonas maltophilia R551-3 Aspartyl/Asparaginyl beta-hydroxylase YP_002030152.1 4241108 R 391008 CDS YP_002030153.1 194367543 6474653 4242450..4243109 1 NC_011071.1 PFAM: protein of unknown function RIO1; KEGG: xcv:XCV4042 putative kinase; Mn2+-dependent serine/threonine protein kinase 4243109 6474653 Smal_3771 Stenotrophomonas maltophilia R551-3 Mn2+-dependent serine/threonine protein kinase YP_002030153.1 4242450 D 391008 CDS YP_002030154.1 194367544 6474654 complement(4243225..4243563) 1 NC_011071.1 PFAM: nitrogen regulatory protein P-II; KEGG: xcb:XC_3957 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 4243563 6474654 Smal_3772 Stenotrophomonas maltophilia R551-3 nitrogen regulatory protein P-II YP_002030154.1 4243225 R 391008 CDS YP_002030155.1 194367545 6474655 4243719..4243970 1 NC_011071.1 PFAM: protein of unknown function DUF526; KEGG: xac:XAC3930 hypothetical protein; hypothetical protein 4243970 6474655 Smal_3773 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030155.1 4243719 D 391008 CDS YP_002030156.1 194367546 6474656 4244096..4244530 1 NC_011071.1 KEGG: bcm:Bcenmc03_5137 rifampin ADP-ribosyl transferase; rifampin ADP-ribosyl transferase 4244530 6474656 Smal_3774 Stenotrophomonas maltophilia R551-3 rifampin ADP-ribosyl transferase YP_002030156.1 4244096 D 391008 CDS YP_002030157.1 194367547 6474657 complement(4244535..4244969) 1 NC_011071.1 KEGG: xcv:XCV0133 hypothetical protein; hypothetical protein 4244969 6474657 Smal_3775 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030157.1 4244535 R 391008 CDS YP_002030158.1 194367548 6474658 4245301..4247538 1 NC_011071.1 KEGG: cbe:Cbei_2045 AAA ATPase; hypothetical protein 4247538 6474658 Smal_3776 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030158.1 4245301 D 391008 CDS YP_002030159.1 194367549 6474659 complement(4247676..4248041) 1 NC_011071.1 hypothetical protein 4248041 6474659 Smal_3777 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030159.1 4247676 R 391008 CDS YP_002030160.1 194367550 6474660 complement(4248109..4248699) 1 NC_011071.1 KEGG: sbm:Shew185_1693 hypothetical protein; hypothetical protein 4248699 6474660 Smal_3778 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030160.1 4248109 R 391008 CDS YP_002030161.1 194367551 6474661 4249348..4249704 1 NC_011071.1 hypothetical protein 4249704 6474661 Smal_3779 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030161.1 4249348 D 391008 CDS YP_002030162.1 194367552 6474662 4249905..4250567 1 NC_011071.1 PFAM: protein of unknown function DUF1629; KEGG: xac:XAC2246 hypothetical protein; hypothetical protein 4250567 6474662 Smal_3780 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030162.1 4249905 D 391008 CDS YP_002030163.1 194367553 6474663 4250609..4253284 1 NC_011071.1 KEGG: aav:Aave_0538 hypothetical protein; hypothetical protein 4253284 6474663 Smal_3781 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030163.1 4250609 D 391008 CDS YP_002030164.1 194367554 6474664 4253491..4254990 1 NC_011071.1 KEGG: xcb:XC_3959 competence related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4254990 6474664 Smal_3782 Stenotrophomonas maltophilia R551-3 Mg chelatase subunit ChlI YP_002030164.1 4253491 D 391008 CDS YP_002030165.1 194367555 6474665 complement(4255115..4255501) 1 NC_011071.1 hypothetical protein 4255501 6474665 Smal_3783 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030165.1 4255115 R 391008 CDS YP_002030166.1 194367556 6474666 complement(4255622..4257940) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdi:GDI0553 putative TonB-dependent receptor; TonB-dependent receptor 4257940 6474666 Smal_3784 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002030166.1 4255622 R 391008 CDS YP_002030167.1 194367557 6474667 complement(4258385..4259218) 1 NC_011071.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 4259218 6474667 Smal_3785 Stenotrophomonas maltophilia R551-3 sugar phosphatase YP_002030167.1 4258385 R 391008 CDS YP_002030168.1 194367558 6474668 4259368..4260030 1 NC_011071.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: sme:SMc00353 putative transmembrane protein; Exopolysaccharide synthesis ExoD 4260030 6474668 Smal_3786 Stenotrophomonas maltophilia R551-3 Exopolysaccharide synthesis ExoD YP_002030168.1 4259368 D 391008 CDS YP_002030169.1 194367559 6474669 complement(4260170..4261480) 1 NC_011071.1 KEGG: neu:NE2501 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 4261480 6474669 Smal_3787 Stenotrophomonas maltophilia R551-3 L-sorbosone dehydrogenase YP_002030169.1 4260170 R 391008 CDS YP_002030170.1 194367560 6474670 complement(4261473..4261913) 1 NC_011071.1 KEGG: neu:NE2500 hypothetical protein; hypothetical protein 4261913 6474670 Smal_3788 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030170.1 4261473 R 391008 CDS YP_002030171.1 194367561 6474671 4262224..4263990 1 NC_011071.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: xcv:XCV2993 extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 4263990 6474671 Smal_3789 Stenotrophomonas maltophilia R551-3 peptidase S8/S53 subtilisin kexin sedolisin YP_002030171.1 4262224 D 391008 CDS YP_002030172.1 194367562 6474672 4263990..4264583 1 NC_011071.1 KEGG: xcv:XCV2994 putative secreted protein; hypothetical protein 4264583 6474672 Smal_3790 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030172.1 4263990 D 391008 CDS YP_002030173.1 194367563 6474673 complement(4264710..4265504) 1 NC_011071.1 PFAM: electron transport protein SCO1/SenC; KEGG: aav:Aave_3898 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4265504 6474673 Smal_3791 Stenotrophomonas maltophilia R551-3 electron transport protein SCO1/SenC YP_002030173.1 4264710 R 391008 CDS YP_002030174.1 194367564 6474674 complement(4265525..4265857) 1 NC_011071.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: eca:ECA1140 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 4265857 6474674 Smal_3792 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit IV YP_002030174.1 4265525 R 391008 CDS YP_002030175.1 194367565 6474675 complement(4265859..4266494) 1 NC_011071.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ses:SARI_02493 hypothetical protein; cytochrome o ubiquinol oxidase subunit III 4266494 6474675 Smal_3793 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit III YP_002030175.1 4265859 R 391008 CDS YP_002030176.1 194367566 6474676 complement(4266491..4268467) 1 NC_011071.1 KEGG: mfa:Mfla_1294 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 4268467 6474676 Smal_3794 Stenotrophomonas maltophilia R551-3 cytochrome o ubiquinol oxidase subunit I YP_002030176.1 4266491 R 391008 CDS YP_002030177.1 194367567 6474677 complement(4268473..4269378) 1 NC_011071.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: yen:YE3141 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 4269378 6474677 Smal_3795 Stenotrophomonas maltophilia R551-3 ubiquinol oxidase subunit II YP_002030177.1 4268473 R 391008 CDS YP_002030178.1 194367568 6474678 4269562..4270977 1 NC_011071.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bav:BAV1837 GntR-family transcriptional regulator; GntR family transcriptional regulator 4270977 6474678 Smal_3796 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002030178.1 4269562 D 391008 CDS YP_002030179.1 194367569 6474679 4271050..4271310 1 NC_011071.1 KEGG: csa:Csal_1496 hypothetical protein; hypothetical protein 4271310 6474679 Smal_3797 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030179.1 4271050 D 391008 CDS YP_002030180.1 194367570 6474680 4271310..4271909 1 NC_011071.1 KEGG: pau:PA14_04020 hypothetical protein; hypothetical protein 4271909 6474680 Smal_3798 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030180.1 4271310 D 391008 CDS YP_002030181.1 194367571 6474681 4271919..4273433 1 NC_011071.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_4502 transcriptional regulator, GntR family with aminotransferase domain; GntR family transcriptional regulator 4273433 6474681 Smal_3799 Stenotrophomonas maltophilia R551-3 GntR family transcriptional regulator YP_002030181.1 4271919 D 391008 CDS YP_002030182.1 194367572 6474682 complement(4273512..4274813) 1 NC_011071.1 PFAM: aminotransferase class V; KEGG: bbt:BBta_3802 putative aminotransferase; class V aminotransferase 4274813 6474682 Smal_3800 Stenotrophomonas maltophilia R551-3 class V aminotransferase YP_002030182.1 4273512 R 391008 CDS YP_002030183.1 194367573 6474683 complement(4274813..4277215) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2417 TonB-dependent receptor, plug; TonB-dependent receptor 4277215 6474683 Smal_3801 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002030183.1 4274813 R 391008 CDS YP_002030184.1 194367574 6474684 4277456..4278127 1 NC_011071.1 KEGG: xac:XAC0314 hypothetical protein; hypothetical protein 4278127 6474684 Smal_3802 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030184.1 4277456 D 391008 CDS YP_002030185.1 194367575 6474685 complement(4278153..4280000) 1 NC_011071.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: efa:EF2674 oligoendopeptidase F,plasmid; peptidase M3A and M3B thimet/oligopeptidase F 4280000 6474685 Smal_3803 Stenotrophomonas maltophilia R551-3 peptidase M3A and M3B thimet/oligopeptidase F YP_002030185.1 4278153 R 391008 CDS YP_002030186.1 194367576 6474686 complement(4280074..4280586) 1 NC_011071.1 KEGG: xcb:XC_0465 hypothetical protein; hypothetical protein 4280586 6474686 Smal_3804 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030186.1 4280074 R 391008 CDS YP_002030187.1 194367577 6474687 4280669..4281286 1 NC_011071.1 PFAM: protein of unknown function DUF1105; KEGG: xac:XAC0589 hypothetical protein; hypothetical protein 4281286 6474687 Smal_3805 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030187.1 4280669 D 391008 CDS YP_002030188.1 194367578 6474688 complement(4281341..4281775) 1 NC_011071.1 KEGG: uma:UM05853.1 hypothetical protein; hypothetical protein 4281775 6474688 Smal_3806 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030188.1 4281341 R 391008 CDS YP_002030189.1 194367579 6474689 complement(4281776..4283200) 1 NC_011071.1 PFAM: short chain fatty acid transporter; KEGG: psb:Psyr_3239 short chain fatty acid transporter; short chain fatty acid transporter 4283200 6474689 Smal_3807 Stenotrophomonas maltophilia R551-3 short chain fatty acid transporter YP_002030189.1 4281776 R 391008 CDS YP_002030190.1 194367580 6474690 complement(4283676..4284611) 1 NC_011071.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4284611 ubiA 6474690 ubiA Stenotrophomonas maltophilia R551-3 4-hydroxybenzoate octaprenyltransferase YP_002030190.1 4283676 R 391008 CDS YP_002030191.1 194367581 6474692 4284869..4285999 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: hne:HNE_0405 transcriptional regulator, AraC family; AraC family transcriptional regulator 4285999 6474692 Smal_3809 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002030191.1 4284869 D 391008 CDS YP_002030192.1 194367582 6474693 4286082..4287959 1 NC_011071.1 KEGG: gdi:GDI1375 hypothetical protein; hypothetical protein 4287959 6474693 Smal_3810 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030192.1 4286082 D 391008 CDS YP_002030193.1 194367583 6474694 complement(4288003..4288410) 1 NC_011071.1 hypothetical protein 4288410 6474694 Smal_3811 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030193.1 4288003 R 391008 CDS YP_002030194.1 194367584 6474695 complement(4288565..4289920) 1 NC_011071.1 PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_1155 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein 4289920 6474695 Smal_3812 Stenotrophomonas maltophilia R551-3 oxidoreductase domain-containing protein YP_002030194.1 4288565 R 391008 CDS YP_002030195.1 194367585 6474696 complement(4289986..4292961) 1 NC_011071.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfm:Xfasm12_1883 TonB-dependent receptor; TonB-dependent receptor 4292961 6474696 Smal_3813 Stenotrophomonas maltophilia R551-3 TonB-dependent receptor YP_002030195.1 4289986 R 391008 CDS YP_002030196.1 194367586 6474697 complement(4293095..4296454) 1 NC_011071.1 PFAM: glycoside hydrolase family 31; coagulation factor 5/8 type domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: saz:Sama_0156 glycosyl hydrolase, family 31/fibronectin type III domain protein; glycoside hydrolase family protein 4296454 6474697 Smal_3814 Stenotrophomonas maltophilia R551-3 glycoside hydrolase family protein YP_002030196.1 4293095 R 391008 CDS YP_002030197.1 194367587 6474698 4296777..4297931 1 NC_011071.1 PFAM: sugar isomerase (SIS); KEGG: sth:STH562 tagatose-6-phosphate aldose/ketose isomerase; sugar isomerase (SIS) 4297931 6474698 Smal_3815 Stenotrophomonas maltophilia R551-3 sugar isomerase (SIS) YP_002030197.1 4296777 D 391008 CDS YP_002030198.1 194367588 6474699 4297924..4298862 1 NC_011071.1 PFAM: ROK family protein; KEGG: spe:Spro_2576 ROK family protein; ROK family protein 4298862 6474699 Smal_3816 Stenotrophomonas maltophilia R551-3 ROK family protein YP_002030198.1 4297924 D 391008 CDS YP_002030199.1 194367589 6474700 4298879..4300213 1 NC_011071.1 KEGG: ypy:YPK_0994 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 4300213 6474700 Smal_3817 Stenotrophomonas maltophilia R551-3 D-tagatose-bisphosphate aldolase non-catalytic subunit YP_002030199.1 4298879 D 391008 CDS YP_002030200.1 194367590 6474701 4300248..4301024 1 NC_011071.1 transcriptional repressor for the agaZVWA and agaSYBCDI operons; DNA-binding transcriptional regulator AgaR 4301024 6474701 Smal_3818 Stenotrophomonas maltophilia R551-3 DNA-binding transcriptional regulator AgaR YP_002030200.1 4300248 D 391008 CDS YP_002030201.1 194367591 6474702 4301021..4302148 1 NC_011071.1 KEGG: cvi:CV_0556 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; N-acetylglucosamine-6-phosphate deacetylase 4302148 6474702 Smal_3819 Stenotrophomonas maltophilia R551-3 N-acetylglucosamine-6-phosphate deacetylase YP_002030201.1 4301021 D 391008 CDS YP_002030202.1 194367592 6474703 4302390..4304192 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ote:Oter_1004 general substrate transporter; general substrate transporter 4304192 6474703 Smal_3820 Stenotrophomonas maltophilia R551-3 general substrate transporter YP_002030202.1 4302390 D 391008 CDS YP_002030203.1 194367593 6474704 complement(4304245..4304661) 1 NC_011071.1 KEGG: ttj:TTHA0697 bifunctional preprotein translocase subunit SecD/SecF; hypothetical protein 4304661 6474704 Smal_3821 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030203.1 4304245 R 391008 CDS YP_002030204.1 194367594 6474705 complement(4304712..4305263) 1 NC_011071.1 KEGG: dac:Daci_5301 hypothetical protein; hypothetical protein 4305263 6474705 Smal_3822 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030204.1 4304712 R 391008 CDS YP_002030205.1 194367595 6474706 complement(4305322..4306017) 1 NC_011071.1 KEGG: xac:XAC0389 competence protein F; competence protein F 4306017 6474706 Smal_3823 Stenotrophomonas maltophilia R551-3 competence protein F YP_002030205.1 4305322 R 391008 CDS YP_002030206.1 194367596 6474707 complement(4306115..4306777) 1 NC_011071.1 KEGG: swd:Swoo_4306 hypothetical protein; hypothetical protein 4306777 6474707 Smal_3824 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030206.1 4306115 R 391008 CDS YP_002030207.1 194367597 6474708 complement(4306774..4308117) 1 NC_011071.1 PFAM: Chloride channel core; KEGG: xcb:XC_1462 chloride channel; chloride channel core protein 4308117 6474708 Smal_3825 Stenotrophomonas maltophilia R551-3 chloride channel core protein YP_002030207.1 4306774 R 391008 CDS YP_002030208.1 194367598 6474709 4308459..4309865 1 NC_011071.1 KEGG: hch:HCH_03617 hypothetical protein; hypothetical protein 4309865 6474709 Smal_3826 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030208.1 4308459 D 391008 CDS YP_002030209.1 194367599 6474710 4310024..4311067 1 NC_011071.1 KEGG: xcv:XCV0403 biotin synthase BioB; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4311067 6474710 Smal_3827 Stenotrophomonas maltophilia R551-3 biotin synthase YP_002030209.1 4310024 D 391008 CDS YP_002030210.1 194367600 6474711 4311135..4312358 1 NC_011071.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 4312358 6474711 Smal_3828 Stenotrophomonas maltophilia R551-3 8-amino-7-oxononanoate synthase YP_002030210.1 4311135 D 391008 CDS YP_002030211.1 194367601 6474712 4312376..4313155 1 NC_011071.1 KEGG: xom:XOO_0215 biotin biosynthesis protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein 4313155 6474712 Smal_3829 Stenotrophomonas maltophilia R551-3 bioH protein YP_002030211.1 4312376 D 391008 CDS YP_002030212.1 194367602 6474713 4313185..4313964 1 NC_011071.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_0396 oxidoreductase; short-chain dehydrogenase/reductase SDR 4313964 6474713 Smal_3830 Stenotrophomonas maltophilia R551-3 short-chain dehydrogenase/reductase SDR YP_002030212.1 4313185 D 391008 CDS YP_002030213.1 194367603 6474714 4313977..4314861 1 NC_011071.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_0395 biotin synthesis protein; biotin biosynthesis protein BioC 4314861 6474714 Smal_3831 Stenotrophomonas maltophilia R551-3 biotin biosynthesis protein BioC YP_002030213.1 4313977 D 391008 CDS YP_002030214.1 194367604 6474715 complement(4315016..4315648) 1 NC_011071.1 PFAM: protein of unknown function DUF218; KEGG: xac:XAC0380 hypothetical protein; hypothetical protein 4315648 6474715 Smal_3832 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030214.1 4315016 R 391008 CDS YP_002030215.1 194367605 6474716 complement(4315645..4316607) 1 NC_011071.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_0391 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 4316607 6474716 Smal_3833 Stenotrophomonas maltophilia R551-3 pyridoxal-5'-phosphate-dependent protein subunit beta YP_002030215.1 4315645 R 391008 CDS YP_002030216.1 194367606 6474717 4316767..4317252 1 NC_011071.1 KEGG: xcb:XC_0390 hypothetical protein; hypothetical protein 4317252 6474717 Smal_3834 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030216.1 4316767 D 391008 CDS YP_002030217.1 194367607 6474718 4317745..4319634 1 NC_011071.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4319634 6474718 Smal_3835 Stenotrophomonas maltophilia R551-3 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002030217.1 4317745 D 391008 CDS YP_002030218.1 194367608 6474719 complement(4319719..4321134) 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xac:XAC0329 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein 4321134 6474719 Smal_3836 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002030218.1 4319719 R 391008 CDS YP_002030219.1 194367609 6474720 complement(4321131..4324280) 1 NC_011071.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xac:XAC0328 multidrug efflux transporter; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 4324280 6474720 Smal_3837 Stenotrophomonas maltophilia R551-3 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002030219.1 4321131 R 391008 CDS YP_002030220.1 194367610 6474721 complement(4324293..4325489) 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC0327 acriflavin resistance protein; RND family efflux transporter MFP subunit 4325489 6474721 Smal_3838 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002030220.1 4324293 R 391008 CDS YP_002030221.1 194367611 6474722 4325619..4327010 1 NC_011071.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xac:XAC0326 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 4327010 6474722 Smal_3839 Stenotrophomonas maltophilia R551-3 integral membrane sensor signal transduction histidine kinase YP_002030221.1 4325619 D 391008 CDS YP_002030222.1 194367612 6474723 4327007..4327696 1 NC_011071.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV0334 two-component system response regulator; winged helix family two component transcriptional regulator 4327696 6474723 Smal_3840 Stenotrophomonas maltophilia R551-3 winged helix family two component transcriptional regulator YP_002030222.1 4327007 D 391008 CDS YP_002030223.1 194367613 6474724 4327830..4328651 1 NC_011071.1 KEGG: rso:RSc0225 hypothetical protein; hypothetical protein 4328651 6474724 Smal_3841 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030223.1 4327830 D 391008 CDS YP_002030224.1 194367614 6474725 4328818..4329348 1 NC_011071.1 KEGG: xac:XAC0348 transferase; transferase 4329348 6474725 Smal_3842 Stenotrophomonas maltophilia R551-3 transferase YP_002030224.1 4328818 D 391008 CDS YP_002030225.1 194367615 6474726 4329472..4330161 1 NC_011071.1 PFAM: RDD domain containing protein; KEGG: psa:PST_1159 predicted membrane protein; RDD domain-containing protein 4330161 6474726 Smal_3843 Stenotrophomonas maltophilia R551-3 RDD domain-containing protein YP_002030225.1 4329472 D 391008 CDS YP_002030226.1 194367616 6474727 4330158..4331150 1 NC_011071.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: pfl:PFL_4790 integral membrane protein; hypothetical protein 4331150 6474727 Smal_3844 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030226.1 4330158 D 391008 CDS YP_002030227.1 194367617 6474728 4331140..4332756 1 NC_011071.1 KEGG: pmy:Pmen_3318 hypothetical protein; hypothetical protein 4332756 6474728 Smal_3845 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030227.1 4331140 D 391008 CDS YP_002030228.1 194367618 6474729 4332753..4333937 1 NC_011071.1 KEGG: psa:PST_1156 hypothetical protein; hypothetical protein 4333937 6474729 Smal_3846 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030228.1 4332753 D 391008 CDS YP_002030229.1 194367619 6474730 4333934..4334920 1 NC_011071.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3320 ATPase associated with various cellular activities, AAA_3; ATPase 4334920 6474730 Smal_3847 Stenotrophomonas maltophilia R551-3 ATPase YP_002030229.1 4333934 D 391008 CDS YP_002030230.1 194367620 6474731 4334917..4336215 1 NC_011071.1 PFAM: protein of unknown function DUF58; KEGG: pfl:PFL_4794 hypothetical protein; hypothetical protein 4336215 6474731 Smal_3848 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030230.1 4334917 D 391008 CDS YP_002030231.1 194367621 6474732 complement(4336469..4337647) 1 NC_011071.1 PFAM: glutathionylspermidine synthase; KEGG: xcb:XC_1277 synthetase/amidase; glutathionylspermidine synthase 4337647 6474732 Smal_3849 Stenotrophomonas maltophilia R551-3 glutathionylspermidine synthase YP_002030231.1 4336469 R 391008 CDS YP_002030232.1 194367622 6474733 complement(4337655..4338227) 1 NC_011071.1 KEGG: xcb:XC_1276 hypothetical protein; hypothetical protein 4338227 6474733 Smal_3850 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030232.1 4337655 R 391008 CDS YP_002030233.1 194367623 6474734 4338601..4340439 1 NC_011071.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4340439 6474734 Smal_3851 Stenotrophomonas maltophilia R551-3 dihydroxy-acid dehydratase YP_002030233.1 4338601 D 391008 CDS YP_002030234.1 194367624 6474735 complement(4340649..4341047) 1 NC_011071.1 hypothetical protein 4341047 6474735 Smal_3852 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030234.1 4340649 R 391008 CDS YP_002030235.1 194367625 6474736 4341171..4341782 1 NC_011071.1 KEGG: xom:XOO_0436 hypothetical protein; hypothetical protein 4341782 6474736 Smal_3853 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030235.1 4341171 D 391008 CDS YP_002030236.1 194367626 6474737 complement(4341840..4343942) 1 NC_011071.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 4343942 dinG 6474737 dinG Stenotrophomonas maltophilia R551-3 ATP-dependent DNA helicase DinG YP_002030236.1 4341840 R 391008 CDS YP_002030237.1 194367627 6474738 complement(4344110..4344463) 1 NC_011071.1 KEGG: xac:XAC4033 hypothetical protein; hypothetical protein 4344463 6474738 Smal_3855 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030237.1 4344110 R 391008 CDS YP_002030238.1 194367628 6474739 complement(4344467..4345312) 1 NC_011071.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4345312 aroE 6474739 aroE Stenotrophomonas maltophilia R551-3 shikimate 5-dehydrogenase YP_002030238.1 4344467 R 391008 CDS YP_002030239.1 194367629 6474740 4345361..4346233 1 NC_011071.1 PFAM: WD40 domain protein beta Propeller; KEGG: xcb:XC_4042 hypothetical protein; WD40 domain-containing protein 4346233 6474740 Smal_3857 Stenotrophomonas maltophilia R551-3 WD40 domain-containing protein YP_002030239.1 4345361 D 391008 CDS YP_002030240.1 194367630 6474741 complement(4346267..4346536) 1 NC_011071.1 hypothetical protein 4346536 6474741 Smal_3858 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030240.1 4346267 R 391008 CDS YP_002030241.1 194367631 6474742 complement(4346569..4347558) 1 NC_011071.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4347558 6474742 Smal_3859 Stenotrophomonas maltophilia R551-3 delta-aminolevulinic acid dehydratase YP_002030241.1 4346569 R 391008 CDS YP_002030242.1 194367632 6474743 complement(4347578..4348495) 1 NC_011071.1 PFAM: protein of unknown function UPF0187; KEGG: met:M446_0834 protein of unknown function UPF0187; hypothetical protein 4348495 6474743 Smal_3860 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030242.1 4347578 R 391008 CDS YP_002030243.1 194367633 6474744 complement(4348618..4348866) 1 NC_011071.1 KEGG: xac:XAC4041 hypothetical protein; hypothetical protein 4348866 6474744 Smal_3861 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030243.1 4348618 R 391008 CDS YP_002030244.1 194367634 6474745 4349051..4349509 1 NC_011071.1 KEGG: xac:XAC4042 hypothetical protein; hypothetical protein 4349509 6474745 Smal_3862 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030244.1 4349051 D 391008 CDS YP_002030245.1 194367635 6474746 complement(4349601..4351403) 1 NC_011071.1 PFAM: protein of unknown function DUF885; KEGG: xcb:XC_4049 hypothetical protein; hypothetical protein 4351403 6474746 Smal_3863 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030245.1 4349601 R 391008 CDS YP_002030246.1 194367636 6474747 complement(4351609..4352124) 1 NC_011071.1 KEGG: xcb:XC_4050 hypothetical protein; hypothetical protein 4352124 6474747 Smal_3864 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030246.1 4351609 R 391008 CDS YP_002030247.1 194367637 6474748 complement(4352150..4354375) 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xcb:XC_4051 dipeptidyl peptidase IV; peptidase S9B dipeptidylpeptidase IV domain-containing protein 4354375 6474748 Smal_3865 Stenotrophomonas maltophilia R551-3 peptidase S9B dipeptidylpeptidase IV domain-containing protein YP_002030247.1 4352150 R 391008 CDS YP_002030248.1 194367638 6474749 complement(4354546..4355235) 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: xac:XAC4047 glutathione S-transferase; glutathione S-transferase domain-containing protein 4355235 6474749 Smal_3866 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002030248.1 4354546 R 391008 CDS YP_002030249.1 194367639 6474750 4355348..4355968 1 NC_011071.1 PFAM: conserved hypothetical protein; KEGG: bbr:BB2252 hypothetical protein; hypothetical protein 4355968 6474750 Smal_3867 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030249.1 4355348 D 391008 CDS YP_002030250.1 194367640 6474751 4356169..4357173 1 NC_011071.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xcv:XCV4142 hypothetical protein; TonB family protein 4357173 6474751 Smal_3868 Stenotrophomonas maltophilia R551-3 TonB family protein YP_002030250.1 4356169 D 391008 CDS YP_002030251.1 194367641 6474752 complement(4357257..4357511) 1 NC_011071.1 KEGG: bcn:Bcen_4127 hypothetical protein; hypothetical protein 4357511 6474752 Smal_3869 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030251.1 4357257 R 391008 CDS YP_002030252.1 194367642 6474753 4357589..4358386 1 NC_011071.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bpd:BURPS668_A1029 transcriptional regulator, AraC family; AraC family transcriptional regulator 4358386 6474753 Smal_3870 Stenotrophomonas maltophilia R551-3 AraC family transcriptional regulator YP_002030252.1 4357589 D 391008 CDS YP_002030253.1 194367643 6474754 4358487..4359197 1 NC_011071.1 PFAM: protein of unknown function DUF1568; KEGG: hch:HCH_01378 transposase and inactivated derivatives; hypothetical protein 4359197 6474754 Smal_3871 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030253.1 4358487 D 391008 CDS YP_002030254.1 194367644 6474755 complement(4359221..4360405) 1 NC_011071.1 KEGG: xac:XAC4053 ABC transporter sodium permease; ABC transporter sodium permease 4360405 6474755 Smal_3872 Stenotrophomonas maltophilia R551-3 ABC transporter sodium permease YP_002030254.1 4359221 R 391008 CDS YP_002030255.1 194367645 6474756 complement(4360402..4361148) 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_4059 sodium ABC transporter ATP-binding protein; ABC transporter-like protein 4361148 6474756 Smal_3873 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002030255.1 4360402 R 391008 CDS YP_002030256.1 194367646 6474757 complement(4361145..4362671) 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: xac:XAC4055 cysteine proteinase; TAP domain-containing protein 4362671 6474757 Smal_3874 Stenotrophomonas maltophilia R551-3 TAP domain-containing protein YP_002030256.1 4361145 R 391008 CDS YP_002030257.1 194367647 6474758 complement(4362740..4363942) 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase 4363942 6474758 Smal_3875 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002030257.1 4362740 R 391008 CDS YP_002030258.1 194367648 6474759 4364098..4364625 1 NC_011071.1 KEGG: bat:BAS2986 hypothetical protein; hypothetical protein 4364625 6474759 Smal_3876 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030258.1 4364098 D 391008 CDS YP_002030259.1 194367649 6474760 4364817..4365989 1 NC_011071.1 PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor; chitin-binding protein 4365989 6474760 Smal_3877 Stenotrophomonas maltophilia R551-3 chitin-binding protein YP_002030259.1 4364817 D 391008 CDS YP_002030260.1 194367650 6474761 4366168..4367343 1 NC_011071.1 PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor; chitin-binding protein 4367343 6474761 Smal_3878 Stenotrophomonas maltophilia R551-3 chitin-binding protein YP_002030260.1 4366168 D 391008 CDS YP_002030261.1 194367651 6474762 complement(4367434..4368183) 1 NC_011071.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xcv:XCV4151 putative phenol hydroxylase component; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4368183 6474762 Smal_3879 Stenotrophomonas maltophilia R551-3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002030261.1 4367434 R 391008 CDS YP_002030262.1 194367652 6474763 4368268..4369236 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_4066 ABC transporter ATP-binding protein; ABC transporter-like protein 4369236 6474763 Smal_3880 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002030262.1 4368268 D 391008 CDS YP_002030263.1 194367653 6474764 4369233..4370024 1 NC_011071.1 PFAM: ABC-2 type transporter; KEGG: xcb:XC_4068 permease; ABC-2 type transporter 4370024 6474764 Smal_3881 Stenotrophomonas maltophilia R551-3 ABC-2 type transporter YP_002030263.1 4369233 D 391008 CDS YP_002030264.1 194367654 6474765 4370384..4371151 1 NC_011071.1 KEGG: hch:HCH_03986 hypothetical protein; hypothetical protein 4371151 6474765 Smal_3882 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030264.1 4370384 D 391008 CDS YP_002030265.1 194367655 6474766 4371458..4372396 1 NC_011071.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 4372396 6474766 Smal_3883 Stenotrophomonas maltophilia R551-3 2-dehydropantoate 2-reductase YP_002030265.1 4371458 D 391008 CDS YP_002030266.1 194367656 6474767 4372405..4373295 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ccr:CC_1055 hypothetical protein; NAD-dependent epimerase/dehydratase 4373295 6474767 Smal_3884 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002030266.1 4372405 D 391008 CDS YP_002030267.1 194367657 6474768 complement(4373362..4374165) 1 NC_011071.1 PFAM: TatD-related deoxyribonuclease; KEGG: xcv:XCV0322 TatD-related DNase; TatD-related deoxyribonuclease 4374165 6474768 Smal_3885 Stenotrophomonas maltophilia R551-3 TatD-related deoxyribonuclease YP_002030267.1 4373362 R 391008 CDS YP_002030268.1 194367658 6474769 4374227..4376731 1 NC_011071.1 KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 4376731 6474769 Smal_3886 Stenotrophomonas maltophilia R551-3 ATP-dependent helicase HrpB YP_002030268.1 4374227 D 391008 CDS YP_002030269.1 194367659 6474770 4376933..4377307 1 NC_011071.1 KEGG: xac:XAC0292 hypothetical protein; hypothetical protein 4377307 6474770 Smal_3887 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030269.1 4376933 D 391008 CDS YP_002030270.1 194367660 6474771 complement(4377455..4378024) 1 NC_011071.1 PFAM: pseudouridine synthase; KEGG: xcv:XCV0298 pseudouridylate synthase; pseudouridine synthase 4378024 6474771 Smal_3888 Stenotrophomonas maltophilia R551-3 pseudouridine synthase YP_002030270.1 4377455 R 391008 CDS YP_002030271.1 194367661 6474772 complement(4378063..4378323) 1 NC_011071.1 hypothetical protein 4378323 6474772 Smal_3889 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030271.1 4378063 R 391008 CDS YP_002030272.1 194367662 6474773 complement(4378425..4379282) 1 NC_011071.1 KEGG: xcv:XCV0297 putative methyltransferase; putative methyltransferase 4379282 6474773 Smal_3890 Stenotrophomonas maltophilia R551-3 putative methyltransferase YP_002030272.1 4378425 R 391008 CDS YP_002030273.1 194367663 6474774 4379452..4380408 1 NC_011071.1 PFAM: aldo/keto reductase; KEGG: xcv:XCV0296 putative oxidoreductase; aldo/keto reductase 4380408 6474774 Smal_3891 Stenotrophomonas maltophilia R551-3 aldo/keto reductase YP_002030273.1 4379452 D 391008 CDS YP_002030274.1 194367664 6474776 4381484..4382608 1 NC_011071.1 PFAM: band 7 protein; KEGG: xac:XAC3964 hypothetical protein; hypothetical protein 4382608 6474776 Smal_3892 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030274.1 4381484 D 391008 CDS YP_002030275.1 194367665 6474777 4382665..4383885 1 NC_011071.1 PFAM: protein of unknown function UPF0027; KEGG: xcv:XCV4058 hypothetical protein; hypothetical protein 4383885 6474777 Smal_3893 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030275.1 4382665 D 391008 CDS YP_002030276.1 194367666 6474778 complement(4384037..4384942) 1 NC_011071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bch:Bcen2424_3571 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4384942 6474778 Smal_3894 Stenotrophomonas maltophilia R551-3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002030276.1 4384037 R 391008 CDS YP_002030277.1 194367667 6474779 complement(4384932..4385387) 1 NC_011071.1 PFAM: protein of unknown function UPF0074; KEGG: pla:Plav_0970 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 4385387 6474779 Smal_3895 Stenotrophomonas maltophilia R551-3 BadM/Rrf2 family transcriptional regulator YP_002030277.1 4384932 R 391008 CDS YP_002030278.1 194367668 6474780 4385571..4387691 1 NC_011071.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_0286 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4387691 6474780 Smal_3896 Stenotrophomonas maltophilia R551-3 methyl-accepting chemotaxis sensory transducer YP_002030278.1 4385571 D 391008 CDS YP_002030279.1 194367669 6474781 complement(4387889..4388791) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II2155 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 4388791 6474781 Smal_3897 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002030279.1 4387889 R 391008 CDS YP_002030280.1 194367670 6474782 4388899..4390113 1 NC_011071.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5537 major facilitator family transporter; major facilitator superfamily protein 4390113 6474782 Smal_3898 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002030280.1 4388899 D 391008 CDS YP_002030281.1 194367671 6474783 4390202..4391011 1 NC_011071.1 PFAM: aldo/keto reductase; KEGG: xcb:XC_0279 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 4391011 6474783 Smal_3899 Stenotrophomonas maltophilia R551-3 aldo/keto reductase YP_002030281.1 4390202 D 391008 CDS YP_002030282.1 194367672 6474784 complement(4391126..4391833) 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xac:XAC0283 hydrolase; alpha/beta hydrolase fold domain-containing protein 4391833 6474784 Smal_3900 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002030282.1 4391126 R 391008 CDS YP_002030283.1 194367673 6474785 4391972..4392352 1 NC_011071.1 PFAM: protein of unknown function DUF74; KEGG: cvi:CV_4322 hypothetical protein; hypothetical protein 4392352 6474785 Smal_3901 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030283.1 4391972 D 391008 CDS YP_002030284.1 194367674 6474786 complement(4392415..4395135) 1 NC_011071.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: xac:XAC4077 hypothetical protein; N-acetyltransferase GCN5 4395135 6474786 Smal_3902 Stenotrophomonas maltophilia R551-3 N-acetyltransferase GCN5 YP_002030284.1 4392415 R 391008 CDS YP_002030285.1 194367675 6474787 complement(4395220..4396590) 1 NC_011071.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: xac:XAC4078 Mg++ transporter; magnesium transporter 4396590 6474787 Smal_3903 Stenotrophomonas maltophilia R551-3 magnesium transporter YP_002030285.1 4395220 R 391008 CDS YP_002030286.1 194367676 6474788 4396931..4398718 1 NC_011071.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xac:XAC4080 glutathione-regulated potassium-efflux system protein; potassium efflux system protein 4398718 6474788 Smal_3904 Stenotrophomonas maltophilia R551-3 potassium efflux system protein YP_002030286.1 4396931 D 391008 CDS YP_002030287.1 194367677 6474789 complement(4398923..4402261) 1 NC_011071.1 PFAM: Ankyrin; KEGG: xcv:XCV4170 putative ankyrin-like membrane protein; ankyrin 4402261 6474789 Smal_3905 Stenotrophomonas maltophilia R551-3 ankyrin YP_002030287.1 4398923 R 391008 CDS YP_002030288.1 194367678 6474790 complement(4402254..4402514) 1 NC_011071.1 PFAM: protein of unknown function DUF709; KEGG: xcv:XCV4171 hypothetical protein; hypothetical protein 4402514 6474790 Smal_3906 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030288.1 4402254 R 391008 CDS YP_002030289.1 194367679 6474791 complement(4402675..4403115) 1 NC_011071.1 KEGG: pen:PSEEN0343 hypothetical protein; hypothetical protein 4403115 6474791 Smal_3907 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030289.1 4402675 R 391008 CDS YP_002030290.1 194367680 6474792 complement(4403178..4404416) 1 NC_011071.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4404416 6474792 Smal_3908 Stenotrophomonas maltophilia R551-3 3-oxoacyl-(acyl carrier protein) synthase II YP_002030290.1 4403178 R 391008 CDS YP_002030291.1 194367681 6474793 complement(4404416..4405147) 1 NC_011071.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_4391 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 4405147 6474793 Smal_3909 Stenotrophomonas maltophilia R551-3 3-oxoacyl-(acyl-carrier-protein) reductase YP_002030291.1 4404416 R 391008 CDS YP_002030292.1 194367682 6474794 complement(4405144..4405599) 1 NC_011071.1 KEGG: rme:Rmet_4390 hypothetical protein; hypothetical protein 4405599 6474794 Smal_3910 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030292.1 4405144 R 391008 CDS YP_002030293.1 194367683 6474795 complement(4405596..4406780) 1 NC_011071.1 PFAM: Beta-ketoacyl synthase; KEGG: rme:Rmet_4389 beta-ketoacyl synthase; beta-ketoacyl synthase 4406780 6474795 Smal_3911 Stenotrophomonas maltophilia R551-3 beta-ketoacyl synthase YP_002030293.1 4405596 R 391008 CDS YP_002030294.1 194367684 6474796 complement(4406777..4407334) 1 NC_011071.1 KEGG: rme:Rmet_4388 hypothetical protein; hypothetical protein 4407334 6474796 Smal_3912 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030294.1 4406777 R 391008 CDS YP_002030295.1 194367685 6474797 complement(4407322..4408572) 1 NC_011071.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rme:Rmet_4387 tryptophan halogenase; monooxygenase FAD-binding 4408572 6474797 Smal_3913 Stenotrophomonas maltophilia R551-3 monooxygenase FAD-binding YP_002030295.1 4407322 R 391008 CDS YP_002030296.1 194367686 6474798 complement(4408626..4410980) 1 NC_011071.1 KEGG: rme:Rmet_4386 putative lipoprotein transmembrane; putative lipoprotein transmembrane 4410980 6474798 Smal_3914 Stenotrophomonas maltophilia R551-3 putative lipoprotein transmembrane YP_002030296.1 4408626 R 391008 CDS YP_002030297.1 194367687 6474799 complement(4410973..4411602) 1 NC_011071.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rme:Rmet_4385 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 4411602 6474799 Smal_3915 Stenotrophomonas maltophilia R551-3 outer membrane lipoprotein carrier protein LolA YP_002030297.1 4410973 R 391008 CDS YP_002030298.1 194367688 6474800 complement(4411599..4412030) 1 NC_011071.1 PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4384 thioesterase superfamily; thioesterase superfamily protein 4412030 6474800 Smal_3916 Stenotrophomonas maltophilia R551-3 thioesterase superfamily protein YP_002030298.1 4411599 R 391008 CDS YP_002030299.1 194367689 6474801 complement(4412017..4413567) 1 NC_011071.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: pen:PSEEN0356 phenylalanine/histidine ammonia-lyase; Histidine ammonia-lyase 4413567 6474801 Smal_3917 Stenotrophomonas maltophilia R551-3 Histidine ammonia-lyase YP_002030299.1 4412017 R 391008 CDS YP_002030300.1 194367690 6474802 complement(4413557..4414498) 1 NC_011071.1 KEGG: rme:Rmet_4383 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 4414498 6474802 Smal_3918 Stenotrophomonas maltophilia R551-3 lipid A biosynthesis acyltransferase YP_002030300.1 4413557 R 391008 CDS YP_002030301.1 194367691 6474803 complement(4414500..4415270) 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: psp:PSPPH_0424 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 4415270 6474803 Smal_3919 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002030301.1 4414500 R 391008 CDS YP_002030302.1 194367692 6474804 complement(4415260..4416945) 1 NC_011071.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4381 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4416945 6474804 Smal_3920 Stenotrophomonas maltophilia R551-3 AMP-dependent synthetase and ligase YP_002030302.1 4415260 R 391008 CDS YP_002030303.1 194367693 6474805 complement(4416938..4417489) 1 NC_011071.1 KEGG: rme:Rmet_4380 hypothetical protein; hypothetical protein 4417489 6474805 Smal_3921 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030303.1 4416938 R 391008 CDS YP_002030304.1 194367694 6474806 complement(4417512..4417769) 1 NC_011071.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4417769 6474806 Smal_3922 Stenotrophomonas maltophilia R551-3 acyl carrier protein YP_002030304.1 4417512 R 391008 CDS YP_002030305.1 194367695 6474807 complement(4417787..4418044) 1 NC_011071.1 KEGG: csa:Csal_2749 acyl carrier protein, putative; acyl carrier protein 4418044 6474807 Smal_3923 Stenotrophomonas maltophilia R551-3 acyl carrier protein YP_002030305.1 4417787 R 391008 CDS YP_002030306.1 194367696 6474808 complement(4418031..4418828) 1 NC_011071.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4418828 6474808 Smal_3924 Stenotrophomonas maltophilia R551-3 phospholipid/glycerol acyltransferase YP_002030306.1 4418031 R 391008 CDS YP_002030307.1 194367697 6474809 complement(4418821..4419564) 1 NC_011071.1 KEGG: rme:Rmet_4376 hypothetical protein; hypothetical protein 4419564 6474809 Smal_3925 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030307.1 4418821 R 391008 CDS YP_002030308.1 194367698 6474810 complement(4419782..4420795) 1 NC_011071.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xcb:XC_1301 quinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 4420795 6474810 Smal_3926 Stenotrophomonas maltophilia R551-3 cytochrome d ubiquinol oxidase subunit II YP_002030308.1 4419782 R 391008 CDS YP_002030309.1 194367699 6474811 complement(4420797..4422194) 1 NC_011071.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: xcv:XCV3129 quinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 4422194 6474811 Smal_3927 Stenotrophomonas maltophilia R551-3 cytochrome bd ubiquinol oxidase subunit I YP_002030309.1 4420797 R 391008 CDS YP_002030310.1 194367700 6474812 complement(4422323..4423522) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xac:XAC3641 ABC transporter permease; hypothetical protein 4423522 6474812 Smal_3928 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030310.1 4422323 R 391008 CDS YP_002030311.1 194367701 6474813 complement(4423524..4424822) 1 NC_011071.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein; hypothetical protein 4424822 6474813 Smal_3929 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030311.1 4423524 R 391008 CDS YP_002030312.1 194367702 6474814 complement(4425141..4425356) 1 NC_011071.1 hypothetical protein 4425356 6474814 Smal_3930 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030312.1 4425141 R 391008 CDS YP_002030313.1 194367703 6474815 complement(4425353..4426006) 1 NC_011071.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pca:Pcar_3124 RNA polymerase, sigma-E factor; ECF subfamily RNA polymerase sigma-24 subunit 4426006 6474815 Smal_3931 Stenotrophomonas maltophilia R551-3 ECF subfamily RNA polymerase sigma-24 subunit YP_002030313.1 4425353 R 391008 CDS YP_002030314.1 194367704 6474816 complement(4426044..4426373) 1 NC_011071.1 hypothetical protein 4426373 6474816 Smal_3932 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030314.1 4426044 R 391008 CDS YP_002030315.1 194367705 6474817 4426541..4428910 1 NC_011071.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xcb:XC_4105 dipeptidyl-peptidase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 4428910 6474817 Smal_3933 Stenotrophomonas maltophilia R551-3 peptidase S9 prolyl oligopeptidase active site domain-containing protein YP_002030315.1 4426541 D 391008 CDS YP_002030316.1 194367706 6474818 4428907..4429326 1 NC_011071.1 PFAM: NUDIX hydrolase; KEGG: msm:MSMEG_4488 hydrolase, NUDIX family protein; NUDIX hydrolase 4429326 6474818 Smal_3934 Stenotrophomonas maltophilia R551-3 NUDIX hydrolase YP_002030316.1 4428907 D 391008 CDS YP_002030317.1 194367707 6474819 4429357..4429917 1 NC_011071.1 KEGG: xcb:XC_4107 hypothetical protein; hypothetical protein 4429917 6474819 Smal_3935 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030317.1 4429357 D 391008 CDS YP_002030318.1 194367708 6474820 4429953..4431074 1 NC_011071.1 hypothetical protein 4431074 6474820 Smal_3936 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030318.1 4429953 D 391008 CDS YP_002030319.1 194367709 6474821 4431112..4432728 1 NC_011071.1 KEGG: mgr:MGG_00209 hypothetical protein; hypothetical protein 4432728 6474821 Smal_3937 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030319.1 4431112 D 391008 CDS YP_002030320.1 194367710 6474822 4432783..4433679 1 NC_011071.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 4433679 6474822 Smal_3938 Stenotrophomonas maltophilia R551-3 coproporphyrinogen III oxidase YP_002030320.1 4432783 D 391008 CDS YP_002030321.1 194367711 6474823 4433773..4435293 1 NC_011071.1 hypothetical protein 4435293 6474823 Smal_3939 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030321.1 4433773 D 391008 CDS YP_002030322.1 194367712 6474824 complement(4435354..4435833) 1 NC_011071.1 KEGG: reu:Reut_A3332 hypothetical protein; hypothetical protein 4435833 6474824 Smal_3940 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030322.1 4435354 R 391008 CDS YP_002030323.1 194367713 6474825 complement(4436164..4438938) 1 NC_011071.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4438938 6474825 Smal_3941 Stenotrophomonas maltophilia R551-3 DNA polymerase I YP_002030323.1 4436164 R 391008 CDS YP_002030324.1 194367714 6474826 4439037..4439321 1 NC_011071.1 KEGG: xcv:XCV4201 putative secreted protein; hypothetical protein 4439321 6474826 Smal_3942 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030324.1 4439037 D 391008 CDS YP_002030325.1 194367715 6474827 complement(4439456..4439902) 1 NC_011071.1 PFAM: UspA domain protein; KEGG: xcv:XCV4245 universal stress protein family protein; UspA domain-containing protein 4439902 6474827 Smal_3943 Stenotrophomonas maltophilia R551-3 UspA domain-containing protein YP_002030325.1 4439456 R 391008 CDS YP_002030326.1 194367716 6474828 4440086..4440232 1 NC_011071.1 hypothetical protein 4440232 6474828 Smal_3944 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030326.1 4440086 D 391008 CDS YP_002030327.1 194367717 6474829 complement(4440317..4440871) 1 NC_011071.1 KEGG: pst:PSPTO_3337 hypothetical protein; hypothetical protein 4440871 6474829 Smal_3945 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030327.1 4440317 R 391008 CDS YP_002030328.1 194367718 6474830 complement(4441050..4441376) 1 NC_011071.1 KEGG: pfl:PFL_2687 phosphatase; phosphatase 4441376 6474830 Smal_3946 Stenotrophomonas maltophilia R551-3 phosphatase YP_002030328.1 4441050 R 391008 CDS YP_002030329.1 194367719 6474831 complement(4441475..4443667) 1 NC_011071.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4443667 uvrD 6474831 uvrD Stenotrophomonas maltophilia R551-3 DNA-dependent helicase II YP_002030329.1 4441475 R 391008 CDS YP_002030330.1 194367720 6474832 complement(4443677..4445098) 1 NC_011071.1 KEGG: xcb:XC_4116 hypothetical protein; hypothetical protein 4445098 6474832 Smal_3948 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030330.1 4443677 R 391008 CDS YP_002030331.1 194367721 6474833 complement(4445144..4446562) 1 NC_011071.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: xcb:XC_4117 cardiolipin synthase; phospholipase D/transphosphatidylase 4446562 6474833 Smal_3949 Stenotrophomonas maltophilia R551-3 phospholipase D/transphosphatidylase YP_002030331.1 4445144 R 391008 CDS YP_002030332.1 194367722 6474834 complement(4446805..4446969) 1 NC_011071.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4446969 rpmG 6474834 rpmG Stenotrophomonas maltophilia R551-3 50S ribosomal protein L33 YP_002030332.1 4446805 R 391008 CDS YP_002030333.1 194367723 6474835 complement(4446983..4447219) 1 NC_011071.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4447219 rpmB 6474835 rpmB Stenotrophomonas maltophilia R551-3 50S ribosomal protein L28 YP_002030333.1 4446983 R 391008 CDS YP_002030334.1 194367724 6474836 complement(4447541..4448050) 1 NC_011071.1 KEGG: lpc:LPC_0800 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4448050 6474836 Smal_3952 Stenotrophomonas maltophilia R551-3 DNA polymerase III subunit epsilon YP_002030334.1 4447541 R 391008 CDS YP_002030335.1 194367725 6474837 complement(4448216..4449109) 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_1308 transcriptional regulator, LysR family; LysR family transcriptional regulator 4449109 6474837 Smal_3953 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002030335.1 4448216 R 391008 CDS YP_002030336.1 194367726 6474838 4449218..4449607 1 NC_011071.1 PFAM: Endoribonuclease L-PSP; KEGG: csa:Csal_0759 endoribonuclease L-PSP; endoribonuclease L-PSP 4449607 6474838 Smal_3954 Stenotrophomonas maltophilia R551-3 endoribonuclease L-PSP YP_002030336.1 4449218 D 391008 CDS YP_002030337.1 194367727 6474839 4450062..4450397 1 NC_011071.1 hypothetical protein 4450397 6474839 Smal_3955 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030337.1 4450062 D 391008 CDS YP_002030338.1 194367728 6474840 4450454..4451707 1 NC_011071.1 PFAM: outer membrane efflux protein; KEGG: cak:Caul_2284 outer membrane efflux protein; outer membrane efflux protein 4451707 6474840 Smal_3956 Stenotrophomonas maltophilia R551-3 outer membrane efflux protein YP_002030338.1 4450454 D 391008 CDS YP_002030339.1 194367729 6474841 4451704..4452909 1 NC_011071.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cak:Caul_2295 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4452909 6474841 Smal_3957 Stenotrophomonas maltophilia R551-3 RND family efflux transporter MFP subunit YP_002030339.1 4451704 D 391008 CDS YP_002030340.1 194367730 6474842 4452920..4456129 1 NC_011071.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cak:Caul_2297 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux pump 4456129 6474842 Smal_3958 Stenotrophomonas maltophilia R551-3 CzcA family heavy metal efflux pump YP_002030340.1 4452920 D 391008 CDS YP_002030341.1 194367731 6474843 complement(4456263..4458035) 1 NC_011071.1 PFAM: protein of unknown function DUF885; KEGG: xcb:XC_4129 hypothetical protein; hypothetical protein 4458035 6474843 Smal_3959 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030341.1 4456263 R 391008 CDS YP_002030342.1 194367732 6474844 4458273..4459217 1 NC_011071.1 PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 4459217 6474844 Smal_3960 Stenotrophomonas maltophilia R551-3 integrase catalytic subunit YP_002030342.1 4458273 D 391008 CDS YP_002030343.1 194367733 6474845 complement(4459429..4459779) 1 NC_011071.1 PFAM: lipid A biosynthesis domain protein; KEGG: xcb:XC_3939 hypothetical protein; lipid A biosynthesis domain-containing protein 4459779 6474845 Smal_3961 Stenotrophomonas maltophilia R551-3 lipid A biosynthesis domain-containing protein YP_002030343.1 4459429 R 391008 CDS YP_002030344.1 194367734 6474846 complement(4459776..4460498) 1 NC_011071.1 PFAM: glycosyl transferase family 2; KEGG: xac:XAC3909 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase 4460498 6474846 Smal_3962 Stenotrophomonas maltophilia R551-3 family 2 glycosyl transferase YP_002030344.1 4459776 R 391008 CDS YP_002030345.1 194367735 6474847 complement(4460589..4461554) 1 NC_011071.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xac:XAC3908 nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase 4461554 6474847 Smal_3963 Stenotrophomonas maltophilia R551-3 NAD-dependent epimerase/dehydratase YP_002030345.1 4460589 R 391008 CDS YP_002030346.1 194367736 6474848 complement(4461600..4462325) 1 NC_011071.1 KEGG: xcb:XC_3936 hypothetical protein; hypothetical protein 4462325 6474848 Smal_3964 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030346.1 4461600 R 391008 CDS YP_002030347.1 194367737 6474849 complement(4462450..4463373) 1 NC_011071.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: xcb:XC_3934 chromosome partitioning protein; parB-like partition protein 4463373 6474849 Smal_3965 Stenotrophomonas maltophilia R551-3 parB-like partition protein YP_002030347.1 4462450 R 391008 CDS YP_002030348.1 194367738 6474850 complement(4463373..4464170) 1 NC_011071.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xac:XAC3905 chromosome partitioning protein; Cobyrinic acid ac-diamide synthase 4464170 6474850 Smal_3966 Stenotrophomonas maltophilia R551-3 Cobyrinic acid ac-diamide synthase YP_002030348.1 4463373 R 391008 CDS YP_002030349.1 194367739 6474851 complement(4464283..4464921) 1 NC_011071.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4464921 gidB 6474851 gidB Stenotrophomonas maltophilia R551-3 16S rRNA methyltransferase GidB YP_002030349.1 4464283 R 391008 CDS YP_002030350.1 194367740 6474852 complement(4464961..4465560) 1 NC_011071.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: xac:XAC4168 HetI protein; 4'-phosphopantetheinyl transferase 4465560 6474852 Smal_3968 Stenotrophomonas maltophilia R551-3 4'-phosphopantetheinyl transferase YP_002030350.1 4464961 R 391008 CDS YP_002030351.1 194367741 6474853 4465645..4465896 1 NC_011071.1 PFAM: Transglycosylase-associated protein; KEGG: xac:XAC4169 transglycosylase associated protein; transglycosylase-associated protein 4465896 6474853 Smal_3969 Stenotrophomonas maltophilia R551-3 transglycosylase-associated protein YP_002030351.1 4465645 D 391008 CDS YP_002030352.1 194367742 6474854 complement(4465969..4466745) 1 NC_011071.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_4135 exodeoxyribonuclease III; exodeoxyribonuclease III 4466745 6474854 Smal_3970 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease III YP_002030352.1 4465969 R 391008 CDS YP_002030353.1 194367743 6474855 complement(4466901..4468310) 1 NC_011071.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bcs:BCAN_B1080 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 4468310 6474855 Smal_3971 Stenotrophomonas maltophilia R551-3 aldehyde dehydrogenase YP_002030353.1 4466901 R 391008 CDS YP_002030354.1 194367744 6474856 complement(4468495..4470156) 1 NC_011071.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: har:HEAR1389 putative sugar transport protein; major facilitator superfamily protein 4470156 6474856 Smal_3972 Stenotrophomonas maltophilia R551-3 major facilitator superfamily protein YP_002030354.1 4468495 R 391008 CDS YP_002030355.1 194367745 6474857 complement(4470255..4471682) 1 NC_011071.1 KEGG: xcv:XCV4274 putative secreted protein; hypothetical protein 4471682 6474857 Smal_3973 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030355.1 4470255 R 391008 CDS YP_002030356.1 194367746 6474858 4471928..4473871 1 NC_011071.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4473871 6474858 Smal_3974 Stenotrophomonas maltophilia R551-3 acetyl-CoA synthetase YP_002030356.1 4471928 D 391008 CDS YP_002030357.1 194367747 6474859 4473993..4474658 1 NC_011071.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcb:XC_4150 two-component system regulatory protein; two component LuxR family transcriptional regulator 4474658 6474859 Smal_3975 Stenotrophomonas maltophilia R551-3 two component LuxR family transcriptional regulator YP_002030357.1 4473993 D 391008 CDS YP_002030358.1 194367748 6474860 complement(4474713..4475168) 1 NC_011071.1 KEGG: ppf:Pput_5083 protein of unknown function DUF1568; hypothetical protein 4475168 6474860 Smal_3976 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030358.1 4474713 R 391008 CDS YP_002030359.1 194367749 6474861 complement(4475335..4475910) 1 NC_011071.1 PFAM: protein of unknown function DUF204; KEGG: xcb:XC_4166 hypothetical protein; hypothetical protein 4475910 6474861 Smal_3977 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030359.1 4475335 R 391008 CDS YP_002030360.1 194367750 6474862 complement(4476351..4479809) 1 NC_011071.1 KEGG: xom:XOO_0308 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 4479809 6474862 Smal_3978 Stenotrophomonas maltophilia R551-3 multi-sensor hybrid histidine kinase YP_002030360.1 4476351 R 391008 CDS YP_002030361.1 194367751 6474863 complement(4479945..4482092) 1 NC_011071.1 KEGG: xom:XOO_3477 hypothetical protein; hypothetical protein 4482092 6474863 Smal_3979 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030361.1 4479945 R 391008 CDS YP_002030362.1 194367752 6474864 complement(4482282..4486139) 1 NC_011071.1 PFAM: protein of unknown function DUF490; KEGG: xcb:XC_4175 hypothetical protein; hypothetical protein 4486139 6474864 Smal_3980 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030362.1 4482282 R 391008 CDS YP_002030363.1 194367753 6474865 complement(4486136..4487932) 1 NC_011071.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xoo:XOO4305 hypothetical protein; surface antigen (D15) 4487932 6474865 Smal_3981 Stenotrophomonas maltophilia R551-3 surface antigen (D15) YP_002030363.1 4486136 R 391008 CDS YP_002030364.1 194367754 6474866 complement(4488145..4490220) 1 NC_011071.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 4490220 glyS 6474866 glyS Stenotrophomonas maltophilia R551-3 glycyl-tRNA synthetase subunit beta YP_002030364.1 4488145 R 391008 CDS YP_002030365.1 194367755 6474867 complement(4490292..4491203) 1 NC_011071.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 4491203 glyQ 6474867 glyQ Stenotrophomonas maltophilia R551-3 glycyl-tRNA synthetase subunit alpha YP_002030365.1 4490292 R 391008 CDS YP_002030366.1 194367756 6474868 4491287..4493122 1 NC_011071.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: xcb:XC_4179 general secretory pathway related protein; type II secretion system protein E 4493122 6474868 Smal_3984 Stenotrophomonas maltophilia R551-3 type II secretion system protein E YP_002030366.1 4491287 D 391008 CDS YP_002030367.1 194367757 6474869 4493094..4493840 1 NC_011071.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 4493840 6474869 Smal_3985 Stenotrophomonas maltophilia R551-3 glutamine amidotransferase YP_002030367.1 4493094 D 391008 CDS YP_002030368.1 194367758 6474870 4493892..4494803 1 NC_011071.1 KEGG: xcb:XC_4181 hypothetical protein; hypothetical protein 4494803 6474870 Smal_3986 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030368.1 4493892 D 391008 CDS YP_002030369.1 194367759 6474871 complement(4494894..4495643) 1 NC_011071.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: xcv:XCV4319 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 4495643 6474871 Smal_3987 Stenotrophomonas maltophilia R551-3 Sec-independent protein translocase subunit TatC YP_002030369.1 4494894 R 391008 CDS YP_002030370.1 194367760 6474872 complement(4495640..4496137) 1 NC_011071.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: xcb:XC_4183 sec-independent translocase; twin-arginine translocation protein subunit TatB 4496137 6474872 Smal_3988 Stenotrophomonas maltophilia R551-3 twin-arginine translocation protein subunit TatB YP_002030370.1 4495640 R 391008 CDS YP_002030371.1 194367761 6474873 complement(4496153..4496380) 1 NC_011071.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4496380 tatA 6474873 tatA Stenotrophomonas maltophilia R551-3 twin arginine translocase protein A YP_002030371.1 4496153 R 391008 CDS YP_002030372.1 194367762 6474874 complement(4496456..4497355) 1 NC_011071.1 PFAM: protein of unknown function DUF500; KEGG: xcv:XCV4322 putative secreted protein; hypothetical protein 4497355 6474874 Smal_3990 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030372.1 4496456 R 391008 CDS YP_002030373.1 194367763 6474875 4497521..4498483 1 NC_011071.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 4498483 hemH 6474875 hemH Stenotrophomonas maltophilia R551-3 ferrochelatase YP_002030373.1 4497521 D 391008 CDS YP_002030374.1 194367764 6474876 4498480..4499334 1 NC_011071.1 PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV4324 hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 4499334 6474876 Smal_3992 Stenotrophomonas maltophilia R551-3 alpha/beta hydrolase fold domain-containing protein YP_002030374.1 4498480 D 391008 CDS YP_002030375.1 194367765 6474877 4499625..4501730 1 NC_011071.1 PFAM: chemotaxis sensory transducer; PAS fold domain protein; KEGG: xac:XAC1897 chemotaxis protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 4501730 6474877 Smal_3993 Stenotrophomonas maltophilia R551-3 Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer YP_002030375.1 4499625 D 391008 CDS YP_002030376.1 194367766 6474888 4513639..4514826 1 NC_011071.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease; benzoate transporter 4514826 6474888 Smal_3994 Stenotrophomonas maltophilia R551-3 benzoate transporter YP_002030376.1 4513639 D 391008 CDS YP_002030377.1 194367767 6474889 complement(4514833..4515606) 1 NC_011071.1 KEGG: reu:Reut_B3543 hypothetical protein; hypothetical protein 4515606 6474889 Smal_3995 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030377.1 4514833 R 391008 CDS YP_002030378.1 194367768 6474890 complement(4515657..4516523) 1 NC_011071.1 PFAM: Aldose 1-epimerase; KEGG: xcb:XC_4244 transglycolase; epimerase; aldose 1-epimerase 4516523 6474890 Smal_3996 Stenotrophomonas maltophilia R551-3 aldose 1-epimerase YP_002030378.1 4515657 R 391008 CDS YP_002030379.1 194367769 6474891 complement(4516564..4517832) 1 NC_011071.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: xcc:XCC4157 epimerase; lytic murein transglycosylase 4517832 6474891 Smal_3997 Stenotrophomonas maltophilia R551-3 lytic murein transglycosylase YP_002030379.1 4516564 R 391008 CDS YP_002030380.1 194367770 6474892 complement(4517917..4518891) 1 NC_011071.1 TIGRFAM: methyltransferase; KEGG: xcb:XC_0177 hypothetical protein; methyltransferase 4518891 6474892 Smal_3998 Stenotrophomonas maltophilia R551-3 methyltransferase YP_002030380.1 4517917 R 391008 CDS YP_002030381.1 194367771 6474893 complement(4518888..4520159) 1 NC_011071.1 PFAM: protein of unknown function DUF323; KEGG: xcv:XCV0169 hypothetical protein; hypothetical protein 4520159 6474893 Smal_3999 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030381.1 4518888 R 391008 CDS YP_002030382.1 194367772 6474894 4520310..4521590 1 NC_011071.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pmy:Pmen_4080 diguanylate cyclase; diguanylate cyclase 4521590 6474894 Smal_4000 Stenotrophomonas maltophilia R551-3 diguanylate cyclase YP_002030382.1 4520310 D 391008 CDS YP_002030383.1 194367773 6474895 complement(4521594..4522010) 1 NC_011071.1 KEGG: xcb:XC_4246 hypothetical protein; hypothetical protein 4522010 6474895 Smal_4001 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030383.1 4521594 R 391008 CDS YP_002030384.1 194367774 6474896 4522090..4522869 1 NC_011071.1 PFAM: protein of unknown function DUF81; KEGG: xcb:XC_4248 hypothetical protein; hypothetical protein 4522869 6474896 Smal_4002 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030384.1 4522090 D 391008 CDS YP_002030385.1 194367775 6474897 complement(4522966..4526346) 1 NC_011071.1 KEGG: xom:XOO_4331 hypothetical protein; hypothetical protein 4526346 6474897 Smal_4003 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030385.1 4522966 R 391008 CDS YP_002030386.1 194367776 6474898 complement(4526363..4527064) 1 NC_011071.1 KEGG: xom:XOO_4332 hypothetical protein; hypothetical protein 4527064 6474898 Smal_4004 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030386.1 4526363 R 391008 CDS YP_002030387.1 194367777 6474899 complement(4527051..4528520) 1 NC_011071.1 KEGG: xoo:XOO4597 hypothetical protein; hypothetical protein 4528520 6474899 Smal_4005 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030387.1 4527051 R 391008 CDS YP_002030388.1 194367778 6474900 complement(4528633..4529244) 1 NC_011071.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4529244 folE 6474900 folE Stenotrophomonas maltophilia R551-3 GTP cyclohydrolase I YP_002030388.1 4528633 R 391008 CDS YP_002030389.1 194367779 6474901 4529849..4530304 1 NC_011071.1 PFAM: regulatory protein MarR; KEGG: xcb:XC_4254 transcriptional regulator for cryptic hemolysin; MarR family transcriptional regulator 4530304 6474901 Smal_4007 Stenotrophomonas maltophilia R551-3 MarR family transcriptional regulator YP_002030389.1 4529849 D 391008 CDS YP_002030390.1 194367780 6474902 4530413..4530622 1 NC_011071.1 PFAM: protein of unknown function DUF1656; KEGG: xcb:XC_4255 hypothetical protein; hypothetical protein 4530622 6474902 Smal_4008 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030390.1 4530413 D 391008 CDS YP_002030391.1 194367781 6474903 4530619..4531536 1 NC_011071.1 PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_4256 fusaric acid resistance protein; secretion protein HlyD family protein 4531536 6474903 Smal_4009 Stenotrophomonas maltophilia R551-3 secretion protein HlyD family protein YP_002030391.1 4530619 D 391008 CDS YP_002030392.1 194367782 6474904 4531533..4532993 1 NC_011071.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xcb:XC_4257 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 4532993 6474904 Smal_4010 Stenotrophomonas maltophilia R551-3 NodT family RND efflux system outer membrane lipoprotein YP_002030392.1 4531533 D 391008 CDS YP_002030393.1 194367783 6474905 4532997..4535036 1 NC_011071.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: xac:XAC4307 hypothetical protein; fusaric acid resistance protein 4535036 6474905 Smal_4011 Stenotrophomonas maltophilia R551-3 fusaric acid resistance protein YP_002030393.1 4532997 D 391008 CDS YP_002030394.1 194367784 6474906 4535131..4535529 1 NC_011071.1 KEGG: fnu:FN0983 hypothetical protein; hypothetical protein 4535529 6474906 Smal_4012 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030394.1 4535131 D 391008 CDS YP_002030395.1 194367785 6474907 complement(4535576..4537456) 1 NC_011071.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: xac:XAC4335 exodeoxyribonuclease V alpha chain; exodeoxyribonuclease V subunit alpha 4537456 6474907 Smal_4013 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease V subunit alpha YP_002030395.1 4535576 R 391008 CDS YP_002030396.1 194367786 6474908 complement(4537453..4541133) 1 NC_011071.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: xcv:XCV4442 exodeoxyribonuclease V beta chain; exodeoxyribonuclease V subunit beta 4541133 6474908 Smal_4014 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease V subunit beta YP_002030396.1 4537453 R 391008 CDS YP_002030397.1 194367787 6474909 complement(4541130..4544474) 1 NC_011071.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: xcb:XC_4289 exodeoxyribonuclease V gamma chain; exodeoxyribonuclease V subunit gamma 4544474 6474909 Smal_4015 Stenotrophomonas maltophilia R551-3 exodeoxyribonuclease V subunit gamma YP_002030397.1 4541130 R 391008 CDS YP_002030398.1 194367788 6474910 4544659..4545456 1 NC_011071.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcv:XCV4450 ABC transporter ATP-binding protein; ABC transporter-like protein 4545456 6474910 Smal_4016 Stenotrophomonas maltophilia R551-3 ABC transporter-like protein YP_002030398.1 4544659 D 391008 CDS YP_002030399.1 194367789 6474911 4545456..4546205 1 NC_011071.1 PFAM: protein of unknown function DUF140; KEGG: xac:XAC4340 toluene tolerance protein; hypothetical protein 4546205 6474911 Smal_4017 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030399.1 4545456 D 391008 CDS YP_002030400.1 194367790 6474912 4546264..4546788 1 NC_011071.1 PFAM: Mammalian cell entry related domain protein; KEGG: xcb:XC_4298 toluene tolerance protein; mammalian cell entry domain-containing protein 4546788 6474912 Smal_4018 Stenotrophomonas maltophilia R551-3 mammalian cell entry domain-containing protein YP_002030400.1 4546264 D 391008 CDS YP_002030401.1 194367791 6474913 4546785..4547447 1 NC_011071.1 PFAM: toluene tolerance family protein; KEGG: xom:XOO_0278 toluene tolerance protein; toluene tolerance family protein 4547447 6474913 Smal_4019 Stenotrophomonas maltophilia R551-3 toluene tolerance family protein YP_002030401.1 4546785 D 391008 CDS YP_002030402.1 194367792 6474914 4547437..4547748 1 NC_011071.1 KEGG: xcb:XC_4300 hypothetical protein; hypothetical protein 4547748 6474914 Smal_4020 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030402.1 4547437 D 391008 CDS YP_002030403.1 194367793 6474915 4547750..4548760 1 NC_011071.1 PFAM: VacJ family lipoprotein; KEGG: xcv:XCV4455 putative outer membrane lipoprotein; VacJ family lipoprotein 4548760 6474915 Smal_4021 Stenotrophomonas maltophilia R551-3 VacJ family lipoprotein YP_002030403.1 4547750 D 391008 CDS YP_002030404.1 194367794 6474916 complement(4548868..4549413) 1 NC_011071.1 PFAM: glutathione peroxidase; KEGG: xac:XAC4346 glutathione peroxidase; glutathione peroxidase 4549413 6474916 Smal_4022 Stenotrophomonas maltophilia R551-3 glutathione peroxidase YP_002030404.1 4548868 R 391008 CDS YP_002030405.1 194367795 6474917 complement(4549550..4549948) 1 NC_011071.1 KEGG: xcv:XCV4458 putative secreted protein; hypothetical protein 4549948 6474917 Smal_4023 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030405.1 4549550 R 391008 CDS YP_002030406.1 194367796 6474918 complement(4550020..4551576) 1 NC_011071.1 PFAM: protein of unknown function DUF195; KEGG: xcb:XC_4304 hypothetical protein; hypothetical protein 4551576 6474918 Smal_4024 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030406.1 4550020 R 391008 CDS YP_002030407.1 194367797 6474919 4551622..4552227 1 NC_011071.1 PFAM: Glutathione S-transferase domain; KEGG: aha:AHA_2659 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 4552227 6474919 Smal_4025 Stenotrophomonas maltophilia R551-3 glutathione S-transferase domain-containing protein YP_002030407.1 4551622 D 391008 CDS YP_002030408.1 194367798 6474920 complement(4552267..4553274) 1 NC_011071.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xac:XAC4349 alginate lyase; zinc-binding alcohol dehydrogenase family protein 4553274 6474920 Smal_4026 Stenotrophomonas maltophilia R551-3 zinc-binding alcohol dehydrogenase family protein YP_002030408.1 4552267 R 391008 CDS YP_002030409.1 194367799 6474921 4553372..4554337 1 NC_011071.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_4306 transcriptional regulator; LysR family transcriptional regulator 4554337 6474921 Smal_4027 Stenotrophomonas maltophilia R551-3 LysR family transcriptional regulator YP_002030409.1 4553372 D 391008 CDS YP_002030410.1 194367800 6474922 4554353..4554982 1 NC_011071.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: lch:Lcho_4198 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4554982 6474922 Smal_4028 Stenotrophomonas maltophilia R551-3 lysine exporter protein LysE/YggA YP_002030410.1 4554353 D 391008 CDS YP_002030411.1 194367801 6474923 4554979..4555407 1 NC_011071.1 KEGG: bur:Bcep18194_B0083 hypothetical protein; hypothetical protein 4555407 6474923 Smal_4029 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030411.1 4554979 D 391008 CDS YP_002030412.1 194367802 6474924 4555404..4556102 1 NC_011071.1 KEGG: pfl:PFL_2452 hypothetical protein; hypothetical protein 4556102 6474924 Smal_4030 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030412.1 4555404 D 391008 CDS YP_002030413.1 194367803 6474925 4556280..4557707 1 NC_011071.1 PFAM: amino acid permease-associated region; KEGG: xcv:XCV4466 amino acid-polyamine-organocation superfamily protein; amino acid permease-associated protein 4557707 6474925 Smal_4031 Stenotrophomonas maltophilia R551-3 amino acid permease-associated protein YP_002030413.1 4556280 D 391008 CDS YP_002030414.1 194367804 6474926 complement(4557800..4559041) 1 NC_011071.1 PFAM: peptidase M19 renal dipeptidase; KEGG: xac:XAC4362 dipeptidase; membrane dipeptidase 4559041 6474926 Smal_4032 Stenotrophomonas maltophilia R551-3 membrane dipeptidase YP_002030414.1 4557800 R 391008 CDS YP_002030415.1 194367805 6474927 4559196..4560005 1 NC_011071.1 KEGG: aci:ACIAD2254 putative tellurium resistant protein (KlaA/KilA); hypothetical protein 4560005 6474927 Smal_4033 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030415.1 4559196 D 391008 CDS YP_002030416.1 194367806 6474928 4560002..4560880 1 NC_011071.1 hypothetical protein 4560880 6474928 Smal_4034 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030416.1 4560002 D 391008 CDS YP_002030417.1 194367807 6474929 complement(4560921..4562090) 1 NC_011071.1 SMART: PUA domain containing protein; KEGG: xcb:XC_4320 oxidoreductase; PUA domain-containing protein 4562090 6474929 Smal_4035 Stenotrophomonas maltophilia R551-3 PUA domain-containing protein YP_002030417.1 4560921 R 391008 CDS YP_002030418.1 194367808 6474930 4562440..4563402 1 NC_011071.1 PFAM: Integral membrane protein TerC; KEGG: xfn:XfasM23_1762 integral membrane protein TerC; integral membrane protein TerC 4563402 6474930 Smal_4036 Stenotrophomonas maltophilia R551-3 integral membrane protein TerC YP_002030418.1 4562440 D 391008 CDS YP_002030419.1 194367809 6474931 4563497..4564267 1 NC_011071.1 PFAM: Rhomboid family protein; KEGG: xcv:XCV4478 hypothetical protein; rhomboid family protein 4564267 6474931 Smal_4037 Stenotrophomonas maltophilia R551-3 rhomboid family protein YP_002030419.1 4563497 D 391008 CDS YP_002030420.1 194367810 6474932 complement(4564354..4565469) 1 NC_011071.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: xcc:XCC4234 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4565469 6474932 Smal_4038 Stenotrophomonas maltophilia R551-3 glycerophosphoryl diester phosphodiesterase YP_002030420.1 4564354 R 391008 CDS YP_002030421.1 194367811 6474933 4565670..4566758 1 NC_011071.1 KEGG: reh:H16_A0011 hypothetical protein; hypothetical protein 4566758 6474933 Smal_4039 Stenotrophomonas maltophilia R551-3 hypothetical protein YP_002030421.1 4565670 D 391008 CDS YP_002030422.1 194367812 6474934 complement(4566706..4567293) 1 NC_011071.1 KEGG: reh:H16_A0010 putative phage-related protein; putative phage-like protein 4567293 6474934 Smal_4040 Stenotrophomonas maltophilia R551-3 putative phage-like protein YP_002030422.1 4566706 R 391008 CDS YP_002030423.1 194367813 6474935 complement(4567399..4568748) 1 NC_011071.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4568748 trmE 6474935 trmE Stenotrophomonas maltophilia R551-3 tRNA modification GTPase TrmE YP_002030423.1 4567399 R 391008 CDS YP_002030424.1 194367814 6474936 complement(4568752..4571424) 1 NC_011071.1 PFAM: TPR repeat-containing protein; polysaccharide deacetylase; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xcb:XC_4329 polysaccharide deacetylase; polysaccharide deacetylase 4571424 6474936 Smal_4042 Stenotrophomonas maltophilia R551-3 polysaccharide deacetylase YP_002030424.1 4568752 R 391008 CDS YP_002030425.1 194367815 6474937 complement(4571574..4573289) 1 NC_011071.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4573289 6474937 Smal_4043 Stenotrophomonas maltophilia R551-3 putative inner membrane protein translocase component YidC YP_002030425.1 4571574 R 391008 CDS YP_002030426.1 194367816 6474938 complement(4573289..4573747) 1 NC_011071.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: xoo:XOO4637 ribonuclease P; ribonuclease P protein component 4573747 6474938 Smal_4044 Stenotrophomonas maltophilia R551-3 ribonuclease P protein component YP_002030426.1 4573289 R 391008 CDS YP_002030427.1 194367817 6474939 complement(4573789..4573929) 1 NC_011071.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4573929 rpmH 6474939 rpmH Stenotrophomonas maltophilia R551-3 50S ribosomal protein L34 YP_002030427.1 4573789 R 391008 CDS