-- dump date 20140620_080731 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 391008000001 SEQ_END SEQ_END NC_011071.1 4573969 4573969 DR NC_011071.1; contig end 4573969..4573969 Stenotrophomonas maltophilia R551-3 YP_002026389.1 CDS dnaA NC_011071.1 215 1546 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 215..1546 Stenotrophomonas maltophilia R551-3 6474940 YP_002026390.1 CDS Smal_0002 NC_011071.1 1823 2923 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1823..2923 Stenotrophomonas maltophilia R551-3 6477478 YP_002026391.1 CDS recF NC_011071.1 3921 5015 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3921..5015 Stenotrophomonas maltophilia R551-3 6477479 YP_002026392.1 CDS gyrB NC_011071.1 5128 7587 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5128..7587 Stenotrophomonas maltophilia R551-3 6477480 YP_002026393.1 CDS Smal_0005 NC_011071.1 7655 8500 D PFAM: Abortive infection protein; KEGG: xcb:XC_0005 hypothetical protein; abortive infection protein 7655..8500 Stenotrophomonas maltophilia R551-3 6477481 YP_002026394.1 CDS Smal_0006 NC_011071.1 8572 9378 D PFAM: peptidase M48 Ste24p; KEGG: xac:XAC0006 hypothetical protein; peptidase M48 Ste24p 8572..9378 Stenotrophomonas maltophilia R551-3 6477482 YP_002026395.1 CDS Smal_0007 NC_011071.1 9511 10698 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0007 hypothetical protein; hypothetical protein 9511..10698 Stenotrophomonas maltophilia R551-3 6477483 YP_002026396.1 CDS Smal_0008 NC_011071.1 10842 11510 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC0008 TonB protein; TonB family protein 10842..11510 Stenotrophomonas maltophilia R551-3 6477484 YP_002026397.1 CDS Smal_0009 NC_011071.1 11606 12367 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC0009 biopolymer transport ExbB protein; MotA/TolQ/ExbB proton channel 11606..12367 Stenotrophomonas maltophilia R551-3 6477485 YP_002026398.1 CDS Smal_0010 NC_011071.1 12428 12853 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcb:XC_0010 biopolymer transport ExbD1 protein; biopolymer transport protein ExbD/TolR 12428..12853 Stenotrophomonas maltophilia R551-3 6477486 YP_002026399.1 CDS Smal_0011 NC_011071.1 12857 13270 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xom:XOO_0011 biopolymer transport ExbD2 protein; biopolymer transport protein ExbD/TolR 12857..13270 Stenotrophomonas maltophilia R551-3 6477487 YP_002026400.1 CDS Smal_0012 NC_011071.1 13421 14881 D PFAM: phospholipase D/Transphosphatidylase; KEGG: xcv:XCV0015 cardiolipin synthetase; phospholipase D/transphosphatidylase 13421..14881 Stenotrophomonas maltophilia R551-3 6477488 YP_002026401.1 CDS Smal_0013 NC_011071.1 14922 15191 D KEGG: xcv:XCV0014 hypothetical protein; hypothetical protein 14922..15191 Stenotrophomonas maltophilia R551-3 6477489 YP_002026402.1 CDS Smal_0014 NC_011071.1 15201 15944 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 15201..15944 Stenotrophomonas maltophilia R551-3 6477490 YP_002026403.1 CDS Smal_0015 NC_011071.1 16088 17179 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: xcc:XCC0015 hypothetical protein; radical SAM protein 16088..17179 Stenotrophomonas maltophilia R551-3 6477491 YP_002026404.1 CDS Smal_0016 NC_011071.1 17350 20574 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: xac:XAC1305 wall-associated protein; YD repeat-containing protein 17350..20574 Stenotrophomonas maltophilia R551-3 6477492 YP_002026405.1 CDS Smal_0017 NC_011071.1 20769 22985 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: sdn:Sden_2443 YD repeat; YD repeat-containing protein 20769..22985 Stenotrophomonas maltophilia R551-3 6477493 YP_002026406.1 CDS Smal_0018 NC_011071.1 22991 23173 D hypothetical protein 22991..23173 Stenotrophomonas maltophilia R551-3 6477494 YP_002026407.1 CDS Smal_0019 NC_011071.1 23234 23941 R KEGG: xac:XAC0018 hypothetical protein; hypothetical protein complement(23234..23941) Stenotrophomonas maltophilia R551-3 6477495 YP_002026408.1 CDS Smal_0020 NC_011071.1 24049 25065 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(24049..25065) Stenotrophomonas maltophilia R551-3 6477496 YP_002026409.1 CDS Smal_0021 NC_011071.1 25398 26600 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(25398..26600) Stenotrophomonas maltophilia R551-3 6477497 YP_002026410.1 CDS Smal_0022 NC_011071.1 26772 28865 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0101 iron transporter; TonB-dependent receptor 26772..28865 Stenotrophomonas maltophilia R551-3 6477498 YP_002026411.1 CDS Smal_0023 NC_011071.1 29094 29438 R KEGG: xcb:XC_3775 hypothetical protein; hypothetical protein complement(29094..29438) Stenotrophomonas maltophilia R551-3 6477499 YP_002026412.1 CDS Smal_0024 NC_011071.1 29586 29984 D KEGG: xcv:XCV0108 hypothetical protein; hypothetical protein 29586..29984 Stenotrophomonas maltophilia R551-3 6477500 YP_002026413.1 CDS Smal_0025 NC_011071.1 30139 31044 D TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: xcb:XC_0108 hypothetical protein; Ku protein 30139..31044 Stenotrophomonas maltophilia R551-3 6477501 YP_002026414.1 CDS Smal_0026 NC_011071.1 31048 33525 D TIGRFAM: DNA ligase D; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; DNA polymerase LigD, ligase domain protein; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: xcb:XC_1808 ATP-dependent DNA ligase; DNA ligase D 31048..33525 Stenotrophomonas maltophilia R551-3 6477502 YP_002026415.1 CDS Smal_0027 NC_011071.1 33597 33989 R hypothetical protein complement(33597..33989) Stenotrophomonas maltophilia R551-3 6477503 YP_002026416.1 CDS Smal_0028 NC_011071.1 34147 35175 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_2868 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein complement(34147..35175) Stenotrophomonas maltophilia R551-3 6477504 YP_002026417.1 CDS Smal_0029 NC_011071.1 35272 35910 R KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase complement(35272..35910) Stenotrophomonas maltophilia R551-3 6477505 YP_002026418.1 CDS Smal_0030 NC_011071.1 36026 36682 R PFAM: cysteine dioxygenase type I; KEGG: bwe:BcerKBAB4_2507 cysteine dioxygenase type I; cysteine dioxygenase type I complement(36026..36682) Stenotrophomonas maltophilia R551-3 6477506 YP_002026419.1 CDS Smal_0031 NC_011071.1 36856 37911 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcv:XCV0151 transcriptional regulator, LacI family; LacI family transcriptional regulator 36856..37911 Stenotrophomonas maltophilia R551-3 6477507 YP_002026420.1 CDS phhA NC_011071.1 38010 38903 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(38010..38903) Stenotrophomonas maltophilia R551-3 6477508 YP_002026421.1 CDS Smal_0033 NC_011071.1 39029 39514 D PFAM: regulatory protein AsnC/Lrp family; KEGG: xac:XAC0175 transcriptional regulator AsnC family; AsnC family transcriptional regulator 39029..39514 Stenotrophomonas maltophilia R551-3 6477509 YP_002026422.1 CDS Smal_0034 NC_011071.1 39662 40405 D hypothetical protein 39662..40405 Stenotrophomonas maltophilia R551-3 6477510 YP_002026423.1 CDS Smal_0035 NC_011071.1 40452 41444 R PFAM: Patatin; KEGG: xcb:XC_0168 hypothetical protein; patatin complement(40452..41444) Stenotrophomonas maltophilia R551-3 6477511 YP_002026424.1 CDS Smal_0036 NC_011071.1 41729 42745 R PFAM: protein of unknown function DUF124; KEGG: xac:XAC0178 hypothetical protein; hypothetical protein complement(41729..42745) Stenotrophomonas maltophilia R551-3 6477512 YP_002026425.1 CDS Smal_0037 NC_011071.1 42905 45178 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC1143 TonB-dependent receptor; TonB-dependent receptor 42905..45178 Stenotrophomonas maltophilia R551-3 6477513 YP_002026426.1 CDS Smal_0038 NC_011071.1 45291 46130 R PFAM: phosphoesterase PA-phosphatase related; KEGG: xom:XOO_4367 phosphatase precursor; acid phosphatase complement(45291..46130) Stenotrophomonas maltophilia R551-3 6477514 YP_002026427.1 CDS Smal_0039 NC_011071.1 46392 47270 D KEGG: spc:Sputcn32_1417 hypothetical protein; hypothetical protein 46392..47270 Stenotrophomonas maltophilia R551-3 6477515 YP_002026428.1 CDS Smal_0040 NC_011071.1 47282 48484 D KEGG: slo:Shew_3564 hypothetical protein; hypothetical protein 47282..48484 Stenotrophomonas maltophilia R551-3 6477516 YP_002026429.1 CDS Smal_0041 NC_011071.1 48628 49479 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC0179 ABC transporter ATP-binding protein; ABC transporter-like protein complement(48628..49479) Stenotrophomonas maltophilia R551-3 6477517 YP_002026430.1 CDS Smal_0042 NC_011071.1 49601 50803 D PFAM: fatty acid desaturase; KEGG: xac:XAC0180 fatty acid desaturase; fatty acid desaturase 49601..50803 Stenotrophomonas maltophilia R551-3 6477518 YP_002026431.1 CDS Smal_0043 NC_011071.1 50800 51132 D KEGG: xom:XOO_4252 hypothetical protein; hypothetical protein 50800..51132 Stenotrophomonas maltophilia R551-3 6477592 YP_002026432.1 CDS Smal_0044 NC_011071.1 51363 52145 D KEGG: xac:XAC3635 hypothetical protein; hypothetical protein 51363..52145 Stenotrophomonas maltophilia R551-3 6477593 YP_002026433.1 CDS Smal_0045 NC_011071.1 52216 53028 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 52216..53028 Stenotrophomonas maltophilia R551-3 6477594 YP_002026434.1 CDS mdoD NC_011071.1 53134 54738 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 53134..54738 Stenotrophomonas maltophilia R551-3 6477595 YP_002026435.1 CDS Smal_0047 NC_011071.1 55261 55881 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(55261..55881) Stenotrophomonas maltophilia R551-3 6477596 YP_002026436.1 CDS Smal_0048 NC_011071.1 55891 56619 R KEGG: sfu:Sfum_0326 Sel1 domain protein repeat-containing protein; hypothetical protein complement(55891..56619) Stenotrophomonas maltophilia R551-3 6477597 YP_002026437.1 CDS Smal_0049 NC_011071.1 56655 57383 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: xac:XAC2943 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(56655..57383) Stenotrophomonas maltophilia R551-3 6477598 YP_002026438.1 CDS Smal_0050 NC_011071.1 57483 59459 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: xcb:XC_4231 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep 57483..59459 Stenotrophomonas maltophilia R551-3 6477599 YP_002026439.1 CDS Smal_0051 NC_011071.1 59721 60248 D KEGG: xac:XAC4280 acetyltransferase; acetyltransferase 59721..60248 Stenotrophomonas maltophilia R551-3 6477600 YP_002026440.1 CDS Smal_0052 NC_011071.1 60347 60997 R PFAM: protein of unknown function DUF480; KEGG: xcv:XCV4380 hypothetical protein; hypothetical protein complement(60347..60997) Stenotrophomonas maltophilia R551-3 6477601 YP_002026441.1 CDS Smal_0053 NC_011071.1 61099 62022 D TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); KEGG: xcb:XC_4227 acid phosphatase; 5'-nucleotidase 61099..62022 Stenotrophomonas maltophilia R551-3 6477602 YP_002026442.1 CDS Smal_0054 NC_011071.1 62019 62744 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 62019..62744 Stenotrophomonas maltophilia R551-3 6477603 YP_002026443.1 CDS Smal_0055 NC_011071.1 63143 64096 D KEGG: xcb:XC_4221 hypothetical protein; hypothetical protein 63143..64096 Stenotrophomonas maltophilia R551-3 6477604 YP_002026444.1 CDS Smal_0056 NC_011071.1 64096 66732 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 64096..66732 Stenotrophomonas maltophilia R551-3 6477605 YP_002026445.1 CDS Smal_0057 NC_011071.1 66823 67026 R KEGG: xcb:XC_4218 hypothetical protein; hypothetical protein complement(66823..67026) Stenotrophomonas maltophilia R551-3 6477606 YP_002026446.1 CDS Smal_0058 NC_011071.1 67117 68013 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 67117..68013 Stenotrophomonas maltophilia R551-3 6477607 YP_002026447.1 CDS rdgC NC_011071.1 68050 68955 D Required for efficient pilin antigenic variation; recombination associated protein 68050..68955 Stenotrophomonas maltophilia R551-3 6477608 YP_002026448.1 CDS Smal_0060 NC_011071.1 69015 69794 D PFAM: protein of unknown function DUF45; KEGG: xcb:XC_4188 hypothetical protein; hypothetical protein 69015..69794 Stenotrophomonas maltophilia R551-3 6477609 YP_002026449.1 CDS Smal_0061 NC_011071.1 70087 70953 R KEGG: dac:Daci_5146 hypothetical protein; hypothetical protein complement(70087..70953) Stenotrophomonas maltophilia R551-3 6477610 YP_002026450.1 CDS Smal_0062 NC_011071.1 71106 73529 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: reu:Reut_B4471 PAS/PAC sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 71106..73529 Stenotrophomonas maltophilia R551-3 6477611 YP_002026451.1 CDS gltD NC_011071.1 73515 74960 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(73515..74960) Stenotrophomonas maltophilia R551-3 6477612 YP_002026452.1 CDS gltB NC_011071.1 75046 79500 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(75046..79500) Stenotrophomonas maltophilia R551-3 6477613 YP_002026453.1 CDS Smal_0065 NC_011071.1 79676 80065 R KEGG: xac:XAC0034 hypothetical protein; hypothetical protein complement(79676..80065) Stenotrophomonas maltophilia R551-3 6477614 YP_002026454.1 CDS Smal_0066 NC_011071.1 80177 81235 D KEGG: xcb:XC_0034 hypothetical protein; hypothetical protein 80177..81235 Stenotrophomonas maltophilia R551-3 6477615 YP_002026455.1 CDS Smal_0067 NC_011071.1 81223 81531 R KEGG: xom:XOO_0154 hypothetical protein; hypothetical protein complement(81223..81531) Stenotrophomonas maltophilia R551-3 6477616 YP_002026456.1 CDS Smal_0068 NC_011071.1 81748 82854 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 81748..82854 Stenotrophomonas maltophilia R551-3 6477617 YP_002026457.1 CDS Smal_0069 NC_011071.1 82974 84389 D KEGG: xcv:XCV1185 hypothetical protein; hypothetical protein 82974..84389 Stenotrophomonas maltophilia R551-3 6477618 YP_002026458.1 CDS Smal_0070 NC_011071.1 84390 85193 D KEGG: xac:XAC1162 hypothetical protein; hypothetical protein 84390..85193 Stenotrophomonas maltophilia R551-3 6477619 YP_002026459.1 CDS Smal_0071 NC_011071.1 85128 86249 R PFAM: beta-lactamase; KEGG: fjo:Fjoh_3817 beta-lactamase; beta-lactamase complement(85128..86249) Stenotrophomonas maltophilia R551-3 6477620 YP_002026460.1 CDS Smal_0072 NC_011071.1 86394 87341 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csa:Csal_2540 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(86394..87341) Stenotrophomonas maltophilia R551-3 6477621 YP_002026461.1 CDS Smal_0073 NC_011071.1 87475 87861 D KEGG: fph:Fphi_0921 hypothetical protein; hypothetical protein 87475..87861 Stenotrophomonas maltophilia R551-3 6477622 YP_002026462.1 CDS Smal_0074 NC_011071.1 87851 89071 D PFAM: major facilitator superfamily MFS_1; KEGG: fph:Fphi_0920 putative transmembrane transport protein; major facilitator superfamily protein 87851..89071 Stenotrophomonas maltophilia R551-3 6477623 YP_002026463.1 CDS Smal_0075 NC_011071.1 89089 91344 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD2116 putative ferric siderophore receptor protein; TonB-dependent receptor 89089..91344 Stenotrophomonas maltophilia R551-3 6477624 YP_002026464.1 CDS Smal_0076 NC_011071.1 91452 91838 D PFAM: Penicillinase repressor; KEGG: xac:XAC0069 methicillin resistance protein; CopY family transcriptional repressor 91452..91838 Stenotrophomonas maltophilia R551-3 6477625 YP_002026465.1 CDS Smal_0077 NC_011071.1 91842 93836 D PFAM: peptidase M56 BlaR1; KEGG: xcv:XCV0046 BlaR1 peptidase M56 family membrane protein; peptidase M56 BlaR1 91842..93836 Stenotrophomonas maltophilia R551-3 6477626 YP_002026466.1 CDS Smal_0078 NC_011071.1 93930 94244 R KEGG: pap:PSPA7_3327 lipoprotein, putative; lipoprotein complement(93930..94244) Stenotrophomonas maltophilia R551-3 6477627 YP_002026467.1 CDS Smal_0079 NC_011071.1 94311 95333 R KEGG: xcb:XC_0053 hypothetical protein; hypothetical protein complement(94311..95333) Stenotrophomonas maltophilia R551-3 6477628 YP_002026468.1 CDS Smal_0080 NC_011071.1 95330 97819 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: xom:XOO_0145 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(95330..97819) Stenotrophomonas maltophilia R551-3 6477629 YP_002026469.1 CDS Smal_0081 NC_011071.1 98032 98550 D KEGG: mcc:718526 regulatory factor X, 1 (influences HLA class II expression); hypothetical protein 98032..98550 Stenotrophomonas maltophilia R551-3 6477630 YP_002026470.1 CDS Smal_0082 NC_011071.1 98590 99264 D KEGG: xcb:XC_0139 hypothetical protein; hypothetical protein 98590..99264 Stenotrophomonas maltophilia R551-3 6477631 YP_002026471.1 CDS Smal_0083 NC_011071.1 99364 101172 R KEGG: xcb:XC_0088 hypothetical protein; hypothetical protein complement(99364..101172) Stenotrophomonas maltophilia R551-3 6477632 YP_002026472.1 CDS Smal_0084 NC_011071.1 101169 103355 R KEGG: xcb:XC_0089 hypothetical protein; hypothetical protein complement(101169..103355) Stenotrophomonas maltophilia R551-3 6477633 YP_002026473.1 CDS Smal_0085 NC_011071.1 103352 104473 R TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: xac:XAC0116 hypothetical protein; hypothetical protein complement(103352..104473) Stenotrophomonas maltophilia R551-3 6477634 YP_002026474.1 CDS Smal_0086 NC_011071.1 104470 105366 R PFAM: protein of unknown function DUF58; KEGG: xcb:XC_0091 hypothetical protein; hypothetical protein complement(104470..105366) Stenotrophomonas maltophilia R551-3 6477635 YP_002026475.1 CDS Smal_0087 NC_011071.1 105374 106357 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase; ATPase complement(105374..106357) Stenotrophomonas maltophilia R551-3 6477636 YP_002026476.1 CDS Smal_0088 NC_011071.1 106374 107081 R KEGG: xcb:XC_0093 hypothetical protein; hypothetical protein complement(106374..107081) Stenotrophomonas maltophilia R551-3 6477637 YP_002026477.1 CDS Smal_0089 NC_011071.1 107081 108415 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xac:XAC0120 TldD protein; peptidase U62 modulator of DNA gyrase complement(107081..108415) Stenotrophomonas maltophilia R551-3 6477638 YP_002026478.1 CDS Smal_0090 NC_011071.1 108437 110071 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV0092 putative modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(108437..110071) Stenotrophomonas maltophilia R551-3 6477639 YP_002026479.1 CDS Smal_0091 NC_011071.1 110099 111730 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV0093 putative modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(110099..111730) Stenotrophomonas maltophilia R551-3 6477640 YP_002026480.1 CDS Smal_0092 NC_011071.1 112416 113030 D PFAM: protein of unknown function DUF938; KEGG: xoo:XOO0034 hypothetical protein; hypothetical protein 112416..113030 Stenotrophomonas maltophilia R551-3 6477641 YP_002026481.1 CDS Smal_0093 NC_011071.1 113031 114353 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bmu:Bmul_4225 HipA N-terminal domain protein; HipA N-terminal domain-containing protein complement(113031..114353) Stenotrophomonas maltophilia R551-3 6477642 YP_002026482.1 CDS Smal_0094 NC_011071.1 114357 114614 R PFAM: helix-turn-helix domain protein; KEGG: rso:RSp1252 putative transcription regulator protein; XRE family transcriptional regulator complement(114357..114614) Stenotrophomonas maltophilia R551-3 6477643 YP_002026483.1 CDS Smal_0095 NC_011071.1 114772 118458 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(114772..118458) Stenotrophomonas maltophilia R551-3 6477644 YP_002026484.1 CDS Smal_0096 NC_011071.1 118628 119263 D KEGG: xcb:XC_0180 hypothetical protein; hypothetical protein 118628..119263 Stenotrophomonas maltophilia R551-3 6477645 YP_002026485.1 CDS Smal_0097 NC_011071.1 119856 121340 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pap:PSPA7_0798 probable ATPase; ATPase AAA complement(119856..121340) Stenotrophomonas maltophilia R551-3 6477646 YP_002026486.1 CDS Smal_0098 NC_011071.1 121464 122093 D KEGG: xcb:XC_0183 partition protein; partition protein 121464..122093 Stenotrophomonas maltophilia R551-3 6477647 YP_002026487.1 CDS Smal_0099 NC_011071.1 122131 122607 D PFAM: Phosphoglycerate mutase; KEGG: xac:XAC0193 hypothetical protein; putative phosphohistidine phosphatase SixA 122131..122607 Stenotrophomonas maltophilia R551-3 6477648 YP_002026488.1 CDS Smal_0100 NC_011071.1 122612 123229 D PFAM: YceI family protein; KEGG: xac:XAC0194 hypothetical protein; hypothetical protein 122612..123229 Stenotrophomonas maltophilia R551-3 6477649 YP_002026489.1 CDS Smal_0101 NC_011071.1 123226 125277 D PFAM: phospholipase D/Transphosphatidylase; KEGG: xcv:XCV0178 phospholipase precursor; phospholipase D/transphosphatidylase 123226..125277 Stenotrophomonas maltophilia R551-3 6477650 YP_002026490.1 CDS Smal_0102 NC_011071.1 125287 125721 D PFAM: thioesterase superfamily protein; KEGG: xcv:XCV0179 hypothetical protein; thioesterase superfamily protein 125287..125721 Stenotrophomonas maltophilia R551-3 6477651 YP_002026491.1 CDS Smal_0103 NC_011071.1 125842 126633 D PFAM: phospholipid/glycerol acyltransferase; KEGG: xcb:XC_0188 acetyltransferase; phospholipid/glycerol acyltransferase 125842..126633 Stenotrophomonas maltophilia R551-3 6477652 YP_002026492.1 CDS Smal_0104 NC_011071.1 126641 127675 D KEGG: xcb:XC_0189 hypothetical protein; hypothetical protein 126641..127675 Stenotrophomonas maltophilia R551-3 6477653 YP_002026493.1 CDS Smal_0105 NC_011071.1 127732 129801 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0199 hypothetical protein; hypothetical protein 127732..129801 Stenotrophomonas maltophilia R551-3 6477654 YP_002026494.1 CDS Smal_0106 NC_011071.1 129812 130423 D PFAM: PEBP family protein; KEGG: xcb:XC_0191 hypothetical protein; PEBP family protein 129812..130423 Stenotrophomonas maltophilia R551-3 6477655 YP_002026495.1 CDS Smal_0107 NC_011071.1 130556 131383 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein; hypothetical protein complement(130556..131383) Stenotrophomonas maltophilia R551-3 6477656 YP_002026496.1 CDS Smal_0108 NC_011071.1 131457 132251 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(131457..132251) Stenotrophomonas maltophilia R551-3 6477657 YP_002026497.1 CDS Smal_0109 NC_011071.1 132476 133885 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: xcb:XC_0194 glutamine synthetase; glutamine synthetase 132476..133885 Stenotrophomonas maltophilia R551-3 6477658 YP_002026498.1 CDS Smal_0110 NC_011071.1 134155 134493 D PFAM: nitrogen regulatory protein P-II; KEGG: xac:XAC0205 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 134155..134493 Stenotrophomonas maltophilia R551-3 6477659 YP_002026499.1 CDS Smal_0111 NC_011071.1 134515 135945 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: xcb:XC_0196 ammonium transporter; ammonium transporter 134515..135945 Stenotrophomonas maltophilia R551-3 6477660 YP_002026500.1 CDS Smal_0112 NC_011071.1 136241 137965 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: xfa:XF2550 outer membrane hemolysin activator protein; Polypeptide-transport-associated domain-containing protein ShlB-type 136241..137965 Stenotrophomonas maltophilia R551-3 6477661 YP_002026501.1 CDS Smal_0113 NC_011071.1 138072 152972 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pst:PSPTO_3229 filamentous hemagglutinin, intein-containing, putative; filamentous hemagglutinin family outer membrane protein 138072..152972 Stenotrophomonas maltophilia R551-3 6477662 YP_002026502.1 CDS Smal_0114 NC_011071.1 152978 153316 D hypothetical protein 152978..153316 Stenotrophomonas maltophilia R551-3 6477663 YP_002026503.1 CDS Smal_0115 NC_011071.1 153441 154199 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: xcb:XC_3877 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 153441..154199 Stenotrophomonas maltophilia R551-3 6477664 YP_002026504.1 CDS Smal_0116 NC_011071.1 154330 155031 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fjo:Fjoh_4495 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator complement(154330..155031) Stenotrophomonas maltophilia R551-3 6477665 YP_002026505.1 CDS Smal_0117 NC_011071.1 155019 156728 R KEGG: fjo:Fjoh_4494 hypothetical protein; C-terminal ATPase domain signal transduction-like protein complement(155019..156728) Stenotrophomonas maltophilia R551-3 6477666 YP_002026506.1 CDS Smal_0118 NC_011071.1 156856 158367 D PFAM: alpha/beta hydrolase fold; KEGG: mmr:Mmar10_1192 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 156856..158367 Stenotrophomonas maltophilia R551-3 6477667 YP_002026507.1 CDS Smal_0119 NC_011071.1 158433 159593 D PFAM: MltA domain protein; 3D domain protein; KEGG: pst:PSPTO_1025 transglycosylase, putative; MltA domain-containing protein 158433..159593 Stenotrophomonas maltophilia R551-3 6477668 YP_002026508.1 CDS Smal_0120 NC_011071.1 159702 160004 D KEGG: hch:HCH_03534 hypothetical protein; hypothetical protein 159702..160004 Stenotrophomonas maltophilia R551-3 6477669 YP_002026509.1 CDS Smal_0121 NC_011071.1 160084 162129 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0690 TonB-dependent receptor; TonB-dependent receptor 160084..162129 Stenotrophomonas maltophilia R551-3 6477670 YP_002026510.1 CDS Smal_0122 NC_011071.1 162245 163306 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_0197 two-component system sensor protein; signal transduction histidine kinase, nitrogen specific, NtrB 162245..163306 Stenotrophomonas maltophilia R551-3 6477671 YP_002026511.1 CDS Smal_0123 NC_011071.1 163299 164747 D KEGG: xcb:XC_0198 two-component system regulatory protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 163299..164747 Stenotrophomonas maltophilia R551-3 6477672 YP_002026512.1 CDS Smal_0124 NC_011071.1 164841 165410 D PFAM: superoxide dismutase copper/zinc binding; KEGG: xoo:XOO4482 superoxide dismutase like protein; copper/zinc binding superoxide dismutase 164841..165410 Stenotrophomonas maltophilia R551-3 6477673 YP_002026513.1 CDS Smal_0125 NC_011071.1 165442 166062 D PFAM: superoxide dismutase copper/zinc binding; KEGG: xcv:XCV0194 superoxide dismutase; copper/zinc binding superoxide dismutase 165442..166062 Stenotrophomonas maltophilia R551-3 6477756 YP_002026514.1 CDS Smal_0126 NC_011071.1 166147 167214 R TIGRFAM: TonB family protein; TonB family protein complement(166147..167214) Stenotrophomonas maltophilia R551-3 6477757 YP_002026515.1 CDS Smal_0127 NC_011071.1 167311 168198 R KEGG: xac:XAC0212 hypothetical protein; hypothetical protein complement(167311..168198) Stenotrophomonas maltophilia R551-3 6477758 YP_002026516.1 CDS Smal_0128 NC_011071.1 168292 169587 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 168292..169587 Stenotrophomonas maltophilia R551-3 6477759 YP_002026517.1 CDS Smal_0129 NC_011071.1 169716 171011 R PFAM: HemY domain protein; KEGG: xac:XAC0214 porphyrin biosynthesis protein; HemY domain-containing protein complement(169716..171011) Stenotrophomonas maltophilia R551-3 6477760 YP_002026518.1 CDS Smal_0130 NC_011071.1 171018 171992 R KEGG: xac:XAC0215 hypothetical protein; hypothetical protein complement(171018..171992) Stenotrophomonas maltophilia R551-3 6477761 YP_002026519.1 CDS Smal_0131 NC_011071.1 172096 172905 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase complement(172096..172905) Stenotrophomonas maltophilia R551-3 6477762 YP_002026520.1 CDS Smal_0132 NC_011071.1 172941 173408 D TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: xac:XAC0218 hypothetical protein; thioesterase domain-containing protein 172941..173408 Stenotrophomonas maltophilia R551-3 6477763 YP_002026521.1 CDS Smal_0133 NC_011071.1 173441 173866 D KEGG: xcb:XC_0211 hypothetical protein; hypothetical protein 173441..173866 Stenotrophomonas maltophilia R551-3 6477764 YP_002026522.1 CDS Smal_0134 NC_011071.1 173924 174361 D PFAM: Rhodanese domain protein; KEGG: xcb:XC_0212 hypothetical protein; rhodanese domain-containing protein 173924..174361 Stenotrophomonas maltophilia R551-3 6477765 YP_002026523.1 CDS Smal_0135 NC_011071.1 174462 174980 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 174462..174980 Stenotrophomonas maltophilia R551-3 6477766 YP_002026524.1 CDS gpsA NC_011071.1 175001 176026 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 175001..176026 Stenotrophomonas maltophilia R551-3 6477767 YP_002026525.1 CDS Smal_0137 NC_011071.1 176166 176642 R KEGG: cel:F09E10.7 F09E10.7a; hypothetical protein complement(176166..176642) Stenotrophomonas maltophilia R551-3 6477768 YP_002026526.1 CDS Smal_0138 NC_011071.1 176759 177427 D KEGG: ssc:733643 nuclear receptor corepressor 2; hypothetical protein 176759..177427 Stenotrophomonas maltophilia R551-3 6477769 YP_002026527.1 CDS Smal_0139 NC_011071.1 177464 178846 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: bpt:Bpet0232 hypothetical protein; HipA N-terminal domain-containing protein complement(177464..178846) Stenotrophomonas maltophilia R551-3 6477770 YP_002026528.1 CDS Smal_0140 NC_011071.1 178843 179106 R PFAM: helix-turn-helix domain protein; KEGG: reu:Reut_A1911 putative transcription regulator protein; helix-turn-helix domain-containing protein complement(178843..179106) Stenotrophomonas maltophilia R551-3 6477771 YP_002026529.1 CDS Smal_0141 NC_011071.1 179540 180226 R KEGG: cak:Caul_4105 hypothetical protein; hypothetical protein complement(179540..180226) Stenotrophomonas maltophilia R551-3 6477772 YP_002026530.1 CDS Smal_0142 NC_011071.1 180383 180655 R KEGG: nar:Saro_2539 hypothetical protein; hypothetical protein complement(180383..180655) Stenotrophomonas maltophilia R551-3 6477773 YP_002026531.1 CDS Smal_0143 NC_011071.1 180868 181863 R KEGG: swi:Swit_2733 hypothetical protein; hypothetical protein complement(180868..181863) Stenotrophomonas maltophilia R551-3 6477774 YP_002026532.1 CDS Smal_0144 NC_011071.1 182025 182600 D KEGG: xom:XOO_3968 hypothetical protein; hypothetical protein 182025..182600 Stenotrophomonas maltophilia R551-3 6477775 YP_002026533.1 CDS Smal_0145 NC_011071.1 182722 183489 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_4320 transcriptional regulator, AraC family; AraC family transcriptional regulator 182722..183489 Stenotrophomonas maltophilia R551-3 6477776 YP_002026534.1 CDS Smal_0146 NC_011071.1 183558 183926 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_2825 conserved hypothetical protein VCA0415; Glyoxalase/bleomycin resistance protein/dioxygenase 183558..183926 Stenotrophomonas maltophilia R551-3 6477777 YP_002026535.1 CDS Smal_0147 NC_011071.1 184050 185024 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: spe:Spro_2444 Dyp-type peroxidase family; dyp-type peroxidase family protein 184050..185024 Stenotrophomonas maltophilia R551-3 6477778 YP_002026536.1 CDS Smal_0148 NC_011071.1 185110 185526 D KEGG: mms:mma_2366 hypothetical protein; hypothetical protein 185110..185526 Stenotrophomonas maltophilia R551-3 6477779 YP_002026537.1 CDS Smal_0149 NC_011071.1 185635 186204 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: bmu:Bmul_5035 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC complement(185635..186204) Stenotrophomonas maltophilia R551-3 6477780 YP_002026538.1 CDS Smal_0150 NC_011071.1 186213 188402 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcc:XCC0674 putative siderophore receptor; TonB-dependent siderophore receptor complement(186213..188402) Stenotrophomonas maltophilia R551-3 6477781 YP_002026539.1 CDS Smal_0151 NC_011071.1 188678 189802 R PFAM: aminoglycoside phosphotransferase; KEGG: xac:XAC3528 hypothetical protein; aminoglycoside phosphotransferase complement(188678..189802) Stenotrophomonas maltophilia R551-3 6477782 YP_002026540.1 CDS Smal_0152 NC_011071.1 189932 190339 R PFAM: 17 kDa surface antigen; KEGG: bpt:Bpet0245 hypothetical protein; 17 kDa surface antigen complement(189932..190339) Stenotrophomonas maltophilia R551-3 6477783 YP_002026541.1 CDS Smal_0153 NC_011071.1 190588 192585 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: xcv:XCV3751 hypothetical protein; peptidoglycan-binding domain 1 protein complement(190588..192585) Stenotrophomonas maltophilia R551-3 6477784 YP_002026542.1 CDS Smal_0154 NC_011071.1 192697 193647 R KEGG: pfl:PFL_2375 hypothetical protein; hypothetical protein complement(192697..193647) Stenotrophomonas maltophilia R551-3 6477785 YP_002026543.1 CDS Smal_0155 NC_011071.1 193846 194484 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_1107 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(193846..194484) Stenotrophomonas maltophilia R551-3 6477786 YP_002026544.1 CDS Smal_0156 NC_011071.1 194560 198159 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; multi-sensor hybrid histidine kinase 194560..198159 Stenotrophomonas maltophilia R551-3 6477787 YP_002026545.1 CDS Smal_0157 NC_011071.1 198153 198554 R PFAM: cytochrome c class I; KEGG: nar:Saro_0817 cytochrome c, class I; cytochrome c class I complement(198153..198554) Stenotrophomonas maltophilia R551-3 6477788 YP_002026546.1 CDS Smal_0158 NC_011071.1 198620 200296 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rme:Rmet_1146 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(198620..200296) Stenotrophomonas maltophilia R551-3 6477789 YP_002026547.1 CDS Smal_0159 NC_011071.1 200583 201776 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xcb:XC_2809 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 200583..201776 Stenotrophomonas maltophilia R551-3 6477790 YP_002026548.1 CDS Smal_0160 NC_011071.1 201909 202784 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_3289 probable transcriptional regulator, LysR family; LysR family transcriptional regulator complement(201909..202784) Stenotrophomonas maltophilia R551-3 6477791 YP_002026549.1 CDS Smal_0161 NC_011071.1 202888 203205 D PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B0521 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 202888..203205 Stenotrophomonas maltophilia R551-3 6477792 YP_002026550.1 CDS Smal_0162 NC_011071.1 203217 203609 D PFAM: 4-oxalocrotonate tautomerase; KEGG: azc:AZC_3698 putative 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 203217..203609 Stenotrophomonas maltophilia R551-3 6477793 YP_002026551.1 CDS Smal_0163 NC_011071.1 203656 204135 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: xcb:XC_0219 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(203656..204135) Stenotrophomonas maltophilia R551-3 6477794 YP_002026552.1 CDS Smal_0164 NC_011071.1 204205 204681 R KEGG: xac:XAC0231 hypothetical protein; hypothetical protein complement(204205..204681) Stenotrophomonas maltophilia R551-3 6477795 YP_002026553.1 CDS Smal_0165 NC_011071.1 205097 207946 D PFAM: peptidase M16 domain protein; KEGG: xcv:XCV0666 putative zinc metalloprotease precursor; peptidase M16 domain-containing protein 205097..207946 Stenotrophomonas maltophilia R551-3 6477796 YP_002026554.1 CDS Smal_0166 NC_011071.1 208151 208468 D KEGG: xcv:XCV0238 putative secreted protein; hypothetical protein 208151..208468 Stenotrophomonas maltophilia R551-3 6477797 YP_002026555.1 CDS Smal_0167 NC_011071.1 208572 209588 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 208572..209588 Stenotrophomonas maltophilia R551-3 6477798 YP_002026556.1 CDS Smal_0168 NC_011071.1 209705 210595 D PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV0241 putative hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 209705..210595 Stenotrophomonas maltophilia R551-3 6477799 YP_002026557.1 CDS Smal_0169 NC_011071.1 210711 211136 R PFAM: protein of unknown function UPF0153; KEGG: xac:XAC0236 ferredoxin; hypothetical protein complement(210711..211136) Stenotrophomonas maltophilia R551-3 6477800 YP_002026558.1 CDS Smal_0170 NC_011071.1 211241 212899 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 211241..212899 Stenotrophomonas maltophilia R551-3 6477801 YP_002026559.1 CDS Smal_0171 NC_011071.1 212896 213888 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: xcb:XC_0229 NAD(P)H steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 212896..213888 Stenotrophomonas maltophilia R551-3 6477802 YP_002026560.1 CDS Smal_0172 NC_011071.1 213971 214126 D PFAM: protein of unknown function DUF1328; KEGG: xac:XAC0239 hypothetical protein; hypothetical protein 213971..214126 Stenotrophomonas maltophilia R551-3 6477803 YP_002026561.1 CDS ddl NC_011071.1 214313 215407 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(214313..215407) Stenotrophomonas maltophilia R551-3 6477804 YP_002026562.1 CDS Smal_0174 NC_011071.1 215958 216593 D PFAM: Sterol-binding domain protein; KEGG: xcv:XCV0247 hypothetical protein; Sterol-binding domain-containing protein 215958..216593 Stenotrophomonas maltophilia R551-3 6477805 YP_002026563.1 CDS ubiB NC_011071.1 216590 218245 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 216590..218245 Stenotrophomonas maltophilia R551-3 6477806 YP_002026564.1 CDS Smal_0176 NC_011071.1 218251 218829 D PFAM: O-methyltransferase family 3; KEGG: xac:XAC2121 O-methyltransferase; O-methyltransferase family protein 218251..218829 Stenotrophomonas maltophilia R551-3 6477807 YP_002026565.1 CDS Smal_0177 NC_011071.1 218937 219698 D PFAM: pseudouridine synthase; KEGG: xcv:XCV0250 pseudouridylate synthase; pseudouridine synthase 218937..219698 Stenotrophomonas maltophilia R551-3 6477808 YP_002026566.1 CDS Smal_0178 NC_011071.1 219783 220310 R KEGG: xom:XOO_0319 hypothetical protein; hypothetical protein complement(219783..220310) Stenotrophomonas maltophilia R551-3 6477809 YP_002026567.1 CDS Smal_0179 NC_011071.1 220445 220876 D PFAM: Class I peptide chain release factor; KEGG: xcb:XC_0237 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 220445..220876 Stenotrophomonas maltophilia R551-3 6477810 YP_002026568.1 CDS Smal_0180 NC_011071.1 220881 221483 D PFAM: phospholipid/glycerol acyltransferase; KEGG: xcv:XCV0253 putative acyltransferase; phospholipid/glycerol acyltransferase 220881..221483 Stenotrophomonas maltophilia R551-3 6477811 YP_002026569.1 CDS Smal_0181 NC_011071.1 221595 223751 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xoo:XOO0344 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 221595..223751 Stenotrophomonas maltophilia R551-3 6477812 YP_002026570.1 CDS Smal_0182 NC_011071.1 223900 224346 R KEGG: xcb:XC_4173 3-dehydroquinate dehydratase; 3-dehydroquinate dehydratase complement(223900..224346) Stenotrophomonas maltophilia R551-3 6477813 YP_002026571.1 CDS Smal_0183 NC_011071.1 224350 224751 R KEGG: xom:XOO_0298 hypothetical protein; hypothetical protein complement(224350..224751) Stenotrophomonas maltophilia R551-3 6477814 YP_002026572.1 CDS Smal_0184 NC_011071.1 225002 225628 D TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: swd:Swoo_0360 signal peptidase I; signal peptidase I 225002..225628 Stenotrophomonas maltophilia R551-3 6477815 YP_002026573.1 CDS Smal_0185 NC_011071.1 225686 227008 D PFAM: major facilitator superfamily MFS_1; KEGG: mrd:Mrad2831_5565 major facilitator superfamily MFS_1; major facilitator superfamily protein 225686..227008 Stenotrophomonas maltophilia R551-3 6477816 YP_002026574.1 CDS Smal_0186 NC_011071.1 227092 228000 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_0564 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(227092..228000) Stenotrophomonas maltophilia R551-3 6477817 YP_002026575.1 CDS Smal_0187 NC_011071.1 228277 229245 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xac:XAC0255 transcriptional regulator; LysR family transcriptional regulator complement(228277..229245) Stenotrophomonas maltophilia R551-3 6477818 YP_002026576.1 CDS Smal_0188 NC_011071.1 229356 230993 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 229356..230993 Stenotrophomonas maltophilia R551-3 6477819 YP_002026577.1 CDS Smal_0189 NC_011071.1 231058 232359 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: xcv:XCV0265 isocitrate lyase; isocitrate lyase 231058..232359 Stenotrophomonas maltophilia R551-3 6477820 YP_002026578.1 CDS Smal_0190 NC_011071.1 232779 233819 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; KEGG: xcv:XCV0266 putative cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 232779..233819 Stenotrophomonas maltophilia R551-3 6477821 YP_002026579.1 CDS Smal_0191 NC_011071.1 233836 236340 D PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: xcb:XC_0250 hypothetical protein; hypothetical protein 233836..236340 Stenotrophomonas maltophilia R551-3 6477822 YP_002026580.1 CDS Smal_0192 NC_011071.1 236357 236647 R KEGG: xac:XAC0260 hypothetical protein; hypothetical protein complement(236357..236647) Stenotrophomonas maltophilia R551-3 6477823 YP_002026581.1 CDS Smal_0193 NC_011071.1 236812 237990 D KEGG: xcv:XCV0269 hypothetical protein; hypothetical protein 236812..237990 Stenotrophomonas maltophilia R551-3 6477824 YP_002026582.1 CDS Smal_0194 NC_011071.1 238039 238380 R KEGG: xcb:XC_0251 hypothetical protein; hypothetical protein complement(238039..238380) Stenotrophomonas maltophilia R551-3 6477825 YP_002026583.1 CDS Smal_0195 NC_011071.1 238413 238727 R KEGG: xcb:XC_0251 hypothetical protein; hypothetical protein complement(238413..238727) Stenotrophomonas maltophilia R551-3 6477897 YP_002026584.1 CDS Smal_0196 NC_011071.1 239128 241110 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: xcv:XCV0271 biotin carboxylase; carbamoyl-phosphate synthase L chain ATP-binding complement(239128..241110) Stenotrophomonas maltophilia R551-3 6477898 YP_002026585.1 CDS Smal_0197 NC_011071.1 241137 242747 R PFAM: carboxyl transferase; KEGG: xcb:XC_0255 acyl-CoA carboxyltransferase beta chain; propionyl-CoA carboxylase complement(241137..242747) Stenotrophomonas maltophilia R551-3 6477899 YP_002026586.1 CDS Smal_0198 NC_011071.1 242758 243921 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xcv:XCV0273 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(242758..243921) Stenotrophomonas maltophilia R551-3 6477900 YP_002026587.1 CDS Smal_0199 NC_011071.1 244082 244690 D PFAM: regulatory protein TetR; KEGG: xcb:XC_0257 transcriptional regulator AcrR family; TetR family transcriptional regulator 244082..244690 Stenotrophomonas maltophilia R551-3 6477901 YP_002026588.1 CDS Smal_0200 NC_011071.1 244896 245414 D PFAM: cytochrome c class I; KEGG: xcv:XCV0281 putative cytochrome c; cytochrome c class I 244896..245414 Stenotrophomonas maltophilia R551-3 6477902 YP_002026589.1 CDS Smal_0201 NC_011071.1 245598 247043 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0274 nuclease; endonuclease/exonuclease/phosphatase 245598..247043 Stenotrophomonas maltophilia R551-3 6477903 YP_002026590.1 CDS Smal_0202 NC_011071.1 247101 247958 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_0269 integral membrane protein; hypothetical protein complement(247101..247958) Stenotrophomonas maltophilia R551-3 6477904 YP_002026591.1 CDS Smal_0203 NC_011071.1 248002 248673 D KEGG: xcb:XC_0270 hypothetical protein; hypothetical protein 248002..248673 Stenotrophomonas maltophilia R551-3 6477905 YP_002026592.1 CDS Smal_0204 NC_011071.1 248670 249770 D PFAM: AFG1-family ATPase; KEGG: xcv:XCV0288 putative ATPase; AFG1 family ATPase 248670..249770 Stenotrophomonas maltophilia R551-3 6477906 YP_002026593.1 CDS Smal_0205 NC_011071.1 249846 250682 R KEGG: xac:XAC0284 hypothetical protein; hypothetical protein complement(249846..250682) Stenotrophomonas maltophilia R551-3 6477907 YP_002026594.1 CDS Smal_0206 NC_011071.1 251258 253669 D KEGG: mxa:MXAN_5057 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha 251258..253669 Stenotrophomonas maltophilia R551-3 6477908 YP_002026595.1 CDS Smal_0207 NC_011071.1 253799 254818 D PFAM: ribonucleotide reductase; KEGG: bba:Bd1983 ribonucleotide-diphosphate reductase small chain; ribonucleoside-diphosphate reductase 253799..254818 Stenotrophomonas maltophilia R551-3 6477909 YP_002026596.1 CDS Smal_0208 NC_011071.1 254976 255611 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppg:PputGB1_2255 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(254976..255611) Stenotrophomonas maltophilia R551-3 6477910 YP_002026597.1 CDS Smal_0209 NC_011071.1 255764 256165 D PFAM: thioesterase superfamily protein; KEGG: xcb:XC_4072 hypothetical protein; thioesterase superfamily protein 255764..256165 Stenotrophomonas maltophilia R551-3 6477911 YP_002026598.1 CDS Smal_0210 NC_011071.1 256221 257027 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 256221..257027 Stenotrophomonas maltophilia R551-3 6477912 YP_002026599.1 CDS Smal_0211 NC_011071.1 257182 258282 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: xac:XAC0321 FMN oxidoreductase; NADH:flavin oxidoreductase 257182..258282 Stenotrophomonas maltophilia R551-3 6477913 YP_002026600.1 CDS Smal_0212 NC_011071.1 258286 259197 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3052 transcriptional regulator; LysR family transcriptional regulator complement(258286..259197) Stenotrophomonas maltophilia R551-3 6477914 YP_002026601.1 CDS purU NC_011071.1 259312 260163 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 259312..260163 Stenotrophomonas maltophilia R551-3 6477915 YP_002026602.1 CDS Smal_0214 NC_011071.1 260276 260902 R PFAM: isochorismatase hydrolase; KEGG: xfn:XfasM23_1394 nicotinamidase; nicotinamidase complement(260276..260902) Stenotrophomonas maltophilia R551-3 6477916 YP_002026603.1 CDS Smal_0215 NC_011071.1 260958 261644 R PFAM: protein of unknown function DUF208; KEGG: spe:Spro_2683 protein of unknown function DUF208; hypothetical protein complement(260958..261644) Stenotrophomonas maltophilia R551-3 6477917 YP_002026604.1 CDS Smal_0216 NC_011071.1 262147 264021 D PFAM: Patatin; KEGG: sme:SMc01492 probable suppressor of E.COLI RpoH thermosensitive MUTATION transmembrane protein; patatin 262147..264021 Stenotrophomonas maltophilia R551-3 6477918 YP_002026605.1 CDS Smal_0217 NC_011071.1 264101 265075 R PFAM: protein of unknown function DUF1028; KEGG: ade:Adeh_0307 hypothetical protein; hypothetical protein complement(264101..265075) Stenotrophomonas maltophilia R551-3 6477919 YP_002026606.1 CDS Smal_0218 NC_011071.1 265373 266740 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: xac:XAC1311 transcriptional regulator; XRE family transcriptional regulator complement(265373..266740) Stenotrophomonas maltophilia R551-3 6477920 YP_002026607.1 CDS Smal_0219 NC_011071.1 266856 268361 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: xcv:XCV1363 putative aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 266856..268361 Stenotrophomonas maltophilia R551-3 6477921 YP_002026608.1 CDS Smal_0220 NC_011071.1 268376 269542 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC1313 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 268376..269542 Stenotrophomonas maltophilia R551-3 6477922 YP_002026609.1 CDS Smal_0221 NC_011071.1 269539 270336 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 269539..270336 Stenotrophomonas maltophilia R551-3 6477923 YP_002026610.1 CDS Smal_0222 NC_011071.1 270333 271508 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xcv:XCV1366 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 270333..271508 Stenotrophomonas maltophilia R551-3 6477924 YP_002026611.1 CDS Smal_0223 NC_011071.1 271505 272395 D KEGG: xcv:XCV1367 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 271505..272395 Stenotrophomonas maltophilia R551-3 6477925 YP_002026612.1 CDS Smal_0224 NC_011071.1 272531 272956 R PFAM: OsmC family protein; KEGG: psa:PST_0169 organic hydroperoxide resistance protein; OsmC family protein complement(272531..272956) Stenotrophomonas maltophilia R551-3 6477926 YP_002026613.1 CDS Smal_0225 NC_011071.1 273068 274180 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rpd:RPD_3086 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(273068..274180) Stenotrophomonas maltophilia R551-3 6477927 YP_002026614.1 CDS Smal_0226 NC_011071.1 274267 275721 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: xcv:XCV3891 sulfate permease; sulfate transporter 274267..275721 Stenotrophomonas maltophilia R551-3 6477928 YP_002026615.1 CDS Smal_0227 NC_011071.1 276483 277514 D PFAM: dihydrouridine synthase DuS; KEGG: xcb:XC_4033 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 276483..277514 Stenotrophomonas maltophilia R551-3 6477929 YP_002026616.1 CDS Smal_0228 NC_011071.1 277727 278101 D KEGG: xom:XOO_0384 hypothetical protein; hypothetical protein 277727..278101 Stenotrophomonas maltophilia R551-3 6477930 YP_002026617.1 CDS Smal_0229 NC_011071.1 278175 278858 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xom:XOO_0385 two-component system regulatory protein; winged helix family two component transcriptional regulator 278175..278858 Stenotrophomonas maltophilia R551-3 6477931 YP_002026618.1 CDS Smal_0230 NC_011071.1 278881 280308 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xac:XAC4022 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 278881..280308 Stenotrophomonas maltophilia R551-3 6477932 YP_002026619.1 CDS Smal_0231 NC_011071.1 280402 281190 R PFAM: protein of unknown function DUF980; KEGG: xcv:XCV4112 hypothetical protein; hypothetical protein complement(280402..281190) Stenotrophomonas maltophilia R551-3 6477933 YP_002026620.1 CDS Smal_0232 NC_011071.1 281157 281441 R KEGG: xcv:XCV4111 putative secreted protein; hypothetical protein complement(281157..281441) Stenotrophomonas maltophilia R551-3 6477934 YP_002026621.1 CDS Smal_0233 NC_011071.1 281586 282554 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 281586..282554 Stenotrophomonas maltophilia R551-3 6477935 YP_002026622.1 CDS Smal_0234 NC_011071.1 282551 283282 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 282551..283282 Stenotrophomonas maltophilia R551-3 6477936 YP_002026623.1 CDS Smal_0235 NC_011071.1 283292 284140 D PFAM: Sporulation domain protein; KEGG: xac:XAC4016 hypothetical protein; sporulation domain-containing protein 283292..284140 Stenotrophomonas maltophilia R551-3 6477937 YP_002026624.1 CDS Smal_0236 NC_011071.1 284440 284727 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891; addiction module killer protein 284440..284727 Stenotrophomonas maltophilia R551-3 6477939 YP_002026625.1 CDS Smal_0237 NC_011071.1 284786 285088 D TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family; putative transcriptional regulator 284786..285088 Stenotrophomonas maltophilia R551-3 6477940 YP_002026626.1 CDS Smal_0238 NC_011071.1 285891 286811 D TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: xcv:XCV4102 arginase; arginase 285891..286811 Stenotrophomonas maltophilia R551-3 6477941 YP_002026627.1 CDS Smal_0239 NC_011071.1 286974 287111 D PFAM: Entericidin EcnAB; KEGG: xcb:XC_4013 putative entericidin A; entericidin EcnAB 286974..287111 Stenotrophomonas maltophilia R551-3 6477942 YP_002026628.1 CDS Smal_0240 NC_011071.1 287315 287536 D PFAM: CsbD family protein; KEGG: xac:XAC4007 hypothetical protein; CsbD family protein 287315..287536 Stenotrophomonas maltophilia R551-3 6477943 YP_002026629.1 CDS Smal_0241 NC_011071.1 287610 288410 R KEGG: afw:Anae109_3503 hypothetical protein; hypothetical protein complement(287610..288410) Stenotrophomonas maltophilia R551-3 6477944 YP_002026630.1 CDS Smal_0242 NC_011071.1 288519 289811 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 288519..289811 Stenotrophomonas maltophilia R551-3 6477945 YP_002026631.1 CDS Smal_0243 NC_011071.1 289950 290252 D hypothetical protein 289950..290252 Stenotrophomonas maltophilia R551-3 6477946 YP_002026632.1 CDS Smal_0244 NC_011071.1 290408 291340 D PFAM: beta-lactamase domain protein; KEGG: xac:XAC4005 beta-lactamase related protein; beta-lactamase domain-containing protein 290408..291340 Stenotrophomonas maltophilia R551-3 6477947 YP_002026633.1 CDS Smal_0245 NC_011071.1 291446 293098 D PFAM: peptidase M28; KEGG: xcv:XCV4096 putative peptidase precursor; peptidase M28 291446..293098 Stenotrophomonas maltophilia R551-3 6477948 YP_002026634.1 CDS Smal_0246 NC_011071.1 293225 293578 R hypothetical protein complement(293225..293578) Stenotrophomonas maltophilia R551-3 6477949 YP_002026635.1 CDS Smal_0247 NC_011071.1 293589 294923 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xcb:XC_4259 dicarboxylate transport protein; general substrate transporter complement(293589..294923) Stenotrophomonas maltophilia R551-3 6477950 YP_002026636.1 CDS Smal_0248 NC_011071.1 295236 296141 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC4003 hypothetical protein; hypothetical protein 295236..296141 Stenotrophomonas maltophilia R551-3 6477951 YP_002026637.1 CDS Smal_0249 NC_011071.1 296138 297034 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcv:XCV4093 drug/metabolite transporter superfamily protein; RarD protein, DMT superfamily transporter 296138..297034 Stenotrophomonas maltophilia R551-3 6477952 YP_002026638.1 CDS Smal_0250 NC_011071.1 297266 300124 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor complement(297266..300124) Stenotrophomonas maltophilia R551-3 6477953 YP_002026639.1 CDS Smal_0251 NC_011071.1 300495 301817 R PFAM: protein of unknown function DUF214; KEGG: xom:XOO_0138 hypothetical protein; hypothetical protein complement(300495..301817) Stenotrophomonas maltophilia R551-3 6477954 YP_002026640.1 CDS Smal_0252 NC_011071.1 301831 302988 R PFAM: protein of unknown function DUF214; KEGG: xom:XOO_0137 hypothetical protein; hypothetical protein complement(301831..302988) Stenotrophomonas maltophilia R551-3 6477955 YP_002026641.1 CDS Smal_0253 NC_011071.1 303003 303692 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3996 ABC transporter ATP-binding protein; ABC transporter-like protein complement(303003..303692) Stenotrophomonas maltophilia R551-3 6477956 YP_002026642.1 CDS Smal_0254 NC_011071.1 303795 305048 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV4088 membrane fusion protein; RND family efflux transporter MFP subunit complement(303795..305048) Stenotrophomonas maltophilia R551-3 6477957 YP_002026643.1 CDS Smal_0255 NC_011071.1 305251 306147 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccr:CC_1147 ABC transporter, ATP-binding protein; ABC transporter-like protein 305251..306147 Stenotrophomonas maltophilia R551-3 6477958 YP_002026644.1 CDS Smal_0256 NC_011071.1 306144 306920 D PFAM: ABC-2 type transporter; KEGG: ilo:IL0311 ABC-type multidrug transport system, permease component; ABC-2 type transporter 306144..306920 Stenotrophomonas maltophilia R551-3 6477959 YP_002026645.1 CDS Smal_0257 NC_011071.1 306927 308141 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcv:XCV4087 two-component system sensor kinase; integral membrane sensor signal transduction histidine kinase 306927..308141 Stenotrophomonas maltophilia R551-3 6477960 YP_002026646.1 CDS Smal_0258 NC_011071.1 308138 308740 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcv:XCV4086 two-component system response regulator, LuxR family; two component LuxR family transcriptional regulator 308138..308740 Stenotrophomonas maltophilia R551-3 6477961 YP_002026647.1 CDS Smal_0259 NC_011071.1 309349 309885 R PFAM: cytochrome B561; KEGG: xac:XAC3991 cytochrome b561; cytochrome B561 complement(309349..309885) Stenotrophomonas maltophilia R551-3 6477962 YP_002026648.1 CDS Smal_0260 NC_011071.1 309882 310985 R PFAM: Catalase domain protein; KEGG: xac:XAC3990 catalase; Catalase domain-containing protein complement(309882..310985) Stenotrophomonas maltophilia R551-3 6477963 YP_002026649.1 CDS Smal_0261 NC_011071.1 311121 312488 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: xcb:XC_3992 leucine aminopeptidase; leucyl aminopeptidase complement(311121..312488) Stenotrophomonas maltophilia R551-3 6477964 YP_002026650.1 CDS Smal_0262 NC_011071.1 312492 313211 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcb:XC_3991 hydrolase; HAD-superfamily hydrolase complement(312492..313211) Stenotrophomonas maltophilia R551-3 6477965 YP_002026651.1 CDS Smal_0263 NC_011071.1 313243 314352 R PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_3990 transport protein; hypothetical protein complement(313243..314352) Stenotrophomonas maltophilia R551-3 6477966 YP_002026652.1 CDS Smal_0264 NC_011071.1 314420 314887 R KEGG: xcb:XC_3989 hypothetical protein; hypothetical protein complement(314420..314887) Stenotrophomonas maltophilia R551-3 6477967 YP_002026653.1 CDS Smal_0265 NC_011071.1 314884 315354 R KEGG: xcv:XCV4076 hypothetical protein; hypothetical protein complement(314884..315354) Stenotrophomonas maltophilia R551-3 6477968 YP_002026654.1 CDS Smal_0266 NC_011071.1 315363 315728 R KEGG: xcb:XC_3987 hypothetical protein; hypothetical protein complement(315363..315728) Stenotrophomonas maltophilia R551-3 6477969 YP_002026655.1 CDS Smal_0267 NC_011071.1 315830 317263 R KEGG: xcv:XCV4074 protease DO precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(315830..317263) Stenotrophomonas maltophilia R551-3 6477970 YP_002026656.1 CDS Smal_0268 NC_011071.1 317755 318663 D KEGG: bvi:Bcep1808_0573 hypothetical protein; hypothetical protein 317755..318663 Stenotrophomonas maltophilia R551-3 6477971 YP_002026657.1 CDS Smal_0269 NC_011071.1 318771 319460 D KEGG: pde:Pden_1723 hypothetical protein; hypothetical protein 318771..319460 Stenotrophomonas maltophilia R551-3 6477972 YP_002026658.1 CDS Smal_0270 NC_011071.1 319476 319835 R PFAM: protein of unknown function DUF1428; KEGG: xcb:XC_3061 hypothetical protein; hypothetical protein complement(319476..319835) Stenotrophomonas maltophilia R551-3 6477973 YP_002026659.1 CDS Smal_0271 NC_011071.1 320118 320690 D KEGG: xcb:XC_0215 hypothetical protein; hypothetical protein 320118..320690 Stenotrophomonas maltophilia R551-3 6477974 YP_002026660.1 CDS Smal_0272 NC_011071.1 320881 321615 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bpd:BURPS668_A0190 capsula synthesis response regulator transcription regulator protein; two component LuxR family transcriptional regulator 320881..321615 Stenotrophomonas maltophilia R551-3 6477975 YP_002026661.1 CDS Smal_0273 NC_011071.1 321560 321949 R KEGG: xcb:XC_3253 hypothetical protein; hypothetical protein complement(321560..321949) Stenotrophomonas maltophilia R551-3 6477976 YP_002026662.1 CDS Smal_0274 NC_011071.1 322128 322826 D PFAM: conserved hypothetical protein; KEGG: pap:PSPA7_3711 hypothetical protein; hypothetical protein 322128..322826 Stenotrophomonas maltophilia R551-3 6477977 YP_002026663.1 CDS Smal_0275 NC_011071.1 322823 324064 R PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP_1850 hypothetical protein; major facilitator superfamily protein complement(322823..324064) Stenotrophomonas maltophilia R551-3 6477978 YP_002026664.1 CDS Smal_0276 NC_011071.1 324115 325002 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppg:PputGB1_1427 transcriptional regulator, LysR family; LysR family transcriptional regulator 324115..325002 Stenotrophomonas maltophilia R551-3 6478061 YP_002026665.1 CDS Smal_0277 NC_011071.1 324971 325438 R PFAM: protein of unknown function DUF1456; KEGG: xcb:XC_0287 hypothetical protein; hypothetical protein complement(324971..325438) Stenotrophomonas maltophilia R551-3 6478062 YP_002026666.1 CDS Smal_0278 NC_011071.1 325601 326353 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcv:XCV4032 putative oxidoreductase precursor; short-chain dehydrogenase/reductase SDR 325601..326353 Stenotrophomonas maltophilia R551-3 6478063 YP_002026667.1 CDS Smal_0279 NC_011071.1 326515 327426 R PFAM: Sporulation domain protein; KEGG: xcv:XCV4030 putative secreted protein; sporulation domain-containing protein complement(326515..327426) Stenotrophomonas maltophilia R551-3 6478064 YP_002026668.1 CDS argS NC_011071.1 327448 329136 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(327448..329136) Stenotrophomonas maltophilia R551-3 6478065 YP_002026669.1 CDS radC NC_011071.1 329251 329955 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(329251..329955) Stenotrophomonas maltophilia R551-3 6478066 YP_002026670.1 CDS Smal_0282 NC_011071.1 330107 331162 D KEGG: atc:AGR_C_1421 hypothetical protein; hypothetical protein 330107..331162 Stenotrophomonas maltophilia R551-3 6478067 YP_002026671.1 CDS Smal_0283 NC_011071.1 331174 331800 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bcm:Bcenmc03_4702 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(331174..331800) Stenotrophomonas maltophilia R551-3 6478068 YP_002026672.1 CDS Smal_0284 NC_011071.1 332029 333291 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 332029..333291 Stenotrophomonas maltophilia R551-3 6478069 YP_002026673.1 CDS dut NC_011071.1 333288 333761 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 333288..333761 Stenotrophomonas maltophilia R551-3 6478070 YP_002026674.1 CDS Smal_0286 NC_011071.1 333774 336122 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: xcv:XCV4025 phosphomannomutase; phosphomannomutase 333774..336122 Stenotrophomonas maltophilia R551-3 6478071 YP_002026675.1 CDS Smal_0287 NC_011071.1 336218 336931 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC0760 two-component system regulatory protein; winged helix family two component transcriptional regulator complement(336218..336931) Stenotrophomonas maltophilia R551-3 6478072 YP_002026676.1 CDS Smal_0288 NC_011071.1 336912 339587 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: xcb:XC_3529 two-component system sensor protein; osmosensitive K+ channel signal transduction histidine kinase complement(336912..339587) Stenotrophomonas maltophilia R551-3 6478073 YP_002026677.1 CDS Smal_0289 NC_011071.1 339624 340274 R KEGG: xcv:XCV0810 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C complement(339624..340274) Stenotrophomonas maltophilia R551-3 6478074 YP_002026678.1 CDS Smal_0290 NC_011071.1 340271 342328 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(340271..342328) Stenotrophomonas maltophilia R551-3 6478075 YP_002026679.1 CDS Smal_0291 NC_011071.1 342339 344048 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(342339..344048) Stenotrophomonas maltophilia R551-3 6478076 YP_002026680.1 CDS Smal_0292 NC_011071.1 344061 344153 R KEGG: xom:XOO_3625 hypothetical protein; hypothetical protein complement(344061..344153) Stenotrophomonas maltophilia R551-3 6478077 YP_002026681.1 CDS Smal_0293 NC_011071.1 344373 345035 R KEGG: xom:XOO_0473 hypothetical protein; hypothetical protein complement(344373..345035) Stenotrophomonas maltophilia R551-3 6478078 YP_002026682.1 CDS pyrE NC_011071.1 345055 345714 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(345055..345714) Stenotrophomonas maltophilia R551-3 6478079 YP_002026683.1 CDS Smal_0295 NC_011071.1 345877 346677 D KEGG: xcb:XC_3930 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 345877..346677 Stenotrophomonas maltophilia R551-3 6478080 YP_002026684.1 CDS Smal_0296 NC_011071.1 346674 348047 D KEGG: bba:Bd0333 AmpG protein; AmpG protein 346674..348047 Stenotrophomonas maltophilia R551-3 6478081 YP_002026685.1 CDS Smal_0297 NC_011071.1 348126 348356 D KEGG: xac:XAC3900 hypothetical protein; hypothetical protein 348126..348356 Stenotrophomonas maltophilia R551-3 6478082 YP_002026686.1 CDS anmK NC_011071.1 348463 349599 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(348463..349599) Stenotrophomonas maltophilia R551-3 6478083 YP_002026687.1 CDS Smal_0299 NC_011071.1 349655 351127 R PFAM: Opacity-associated protein A; Peptidase M23; KEGG: xcb:XC_3926 hypothetical protein; peptidase M23 complement(349655..351127) Stenotrophomonas maltophilia R551-3 6478084 YP_002026688.1 CDS Smal_0300 NC_011071.1 351295 352506 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 351295..352506 Stenotrophomonas maltophilia R551-3 6478085 YP_002026689.1 CDS Smal_0301 NC_011071.1 364491 366206 R PFAM: peptidase M28; KEGG: xcb:XC_0024 hypothetical protein; peptidase M28 complement(364491..366206) Stenotrophomonas maltophilia R551-3 6478097 YP_002026690.1 CDS Smal_0302 NC_011071.1 366293 366955 R KEGG: xcb:XC_0023 hypothetical protein; hypothetical protein complement(366293..366955) Stenotrophomonas maltophilia R551-3 6478098 YP_002026691.1 CDS Smal_0303 NC_011071.1 367051 368349 D PFAM: Peptidase M23; KEGG: xom:XOO_4323 hypothetical protein; peptidase M23 367051..368349 Stenotrophomonas maltophilia R551-3 6478099 YP_002026692.1 CDS Smal_0304 NC_011071.1 368458 369954 D KEGG: xom:XOO_4322 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 368458..369954 Stenotrophomonas maltophilia R551-3 6478100 YP_002026693.1 CDS Smal_0305 NC_011071.1 370064 370756 R PFAM: Rhomboid family protein; KEGG: xcb:XC_0018 hypothetical protein; rhomboid family protein complement(370064..370756) Stenotrophomonas maltophilia R551-3 6478101 YP_002026694.1 CDS Smal_0306 NC_011071.1 370983 372332 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: xcb:XC_0017 outer membrane protein; aromatic hydrocarbon degradation membrane protein 370983..372332 Stenotrophomonas maltophilia R551-3 6478102 YP_002026695.1 CDS Smal_0307 NC_011071.1 372418 373017 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pmy:Pmen_1541 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 372418..373017 Stenotrophomonas maltophilia R551-3 6478103 YP_002026696.1 CDS Smal_0308 NC_011071.1 373136 376393 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(373136..376393) Stenotrophomonas maltophilia R551-3 6478104 YP_002026697.1 CDS Smal_0309 NC_011071.1 376629 377105 D KEGG: xcv:XCV4007 hypothetical protein; hypothetical protein 376629..377105 Stenotrophomonas maltophilia R551-3 6478105 YP_002026698.1 CDS Smal_0310 NC_011071.1 377117 378079 D KEGG: xac:XAC3888 cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II 377117..378079 Stenotrophomonas maltophilia R551-3 6478106 YP_002026699.1 CDS Smal_0311 NC_011071.1 378139 379746 D KEGG: xac:XAC3887 cytochrome c oxidase subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 378139..379746 Stenotrophomonas maltophilia R551-3 6478107 YP_002026700.1 CDS Smal_0312 NC_011071.1 379755 379988 D KEGG: xom:XOO_3918 hypothetical protein; hypothetical protein 379755..379988 Stenotrophomonas maltophilia R551-3 6478108 YP_002026701.1 CDS Smal_0313 NC_011071.1 379985 380575 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 379985..380575 Stenotrophomonas maltophilia R551-3 6478109 YP_002026702.1 CDS Smal_0314 NC_011071.1 380590 381465 D PFAM: cytochrome c oxidase subunit III; KEGG: xcb:XC_3901 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 380590..381465 Stenotrophomonas maltophilia R551-3 6478110 YP_002026703.1 CDS Smal_0315 NC_011071.1 381486 381704 R KEGG: xcb:XC_3900 hypothetical protein; hypothetical protein complement(381486..381704) Stenotrophomonas maltophilia R551-3 6478111 YP_002026704.1 CDS Smal_0316 NC_011071.1 381762 382490 D KEGG: xcv:XCV4000 hypothetical protein; hypothetical protein 381762..382490 Stenotrophomonas maltophilia R551-3 6478112 YP_002026705.1 CDS Smal_0317 NC_011071.1 382587 383156 D KEGG: xac:XAC3881 hypothetical protein; hypothetical protein 382587..383156 Stenotrophomonas maltophilia R551-3 6478113 YP_002026706.1 CDS Smal_0318 NC_011071.1 383167 384330 D PFAM: cytochrome oxidase assembly; KEGG: xac:XAC3880 hypothetical protein; cytochrome oxidase assembly 383167..384330 Stenotrophomonas maltophilia R551-3 6478114 YP_002026707.1 CDS Smal_0319 NC_011071.1 384335 385228 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 384335..385228 Stenotrophomonas maltophilia R551-3 6478115 YP_002026708.1 CDS Smal_0320 NC_011071.1 385420 386241 D KEGG: mxa:MXAN_1009 putative lipoprotein; hypothetical protein 385420..386241 Stenotrophomonas maltophilia R551-3 6478116 YP_002026709.1 CDS Smal_0321 NC_011071.1 386374 387345 R PFAM: Bile acid:sodium symporter; KEGG: xcb:XC_3894 hypothetical protein; bile acid:sodium symporter complement(386374..387345) Stenotrophomonas maltophilia R551-3 6478117 YP_002026710.1 CDS Smal_0322 NC_011071.1 387374 387874 R PFAM: protein of unknown function DUF442; KEGG: xcb:XC_3893 hypothetical protein; hypothetical protein complement(387374..387874) Stenotrophomonas maltophilia R551-3 6478118 YP_002026711.1 CDS dnaG NC_011071.1 387903 389642 R synthesizes RNA primers at the replication forks; DNA primase complement(387903..389642) Stenotrophomonas maltophilia R551-3 6478119 YP_002026712.1 CDS Smal_0324 NC_011071.1 389703 390647 R PFAM: ribonuclease BN; KEGG: xcv:XCV3993 putative ribonuclease BN; ribonuclease BN complement(389703..390647) Stenotrophomonas maltophilia R551-3 6478120 YP_002026713.1 CDS Smal_0325 NC_011071.1 390751 391194 R KEGG: xac:XAC3873 hypothetical protein; hypothetical protein complement(390751..391194) Stenotrophomonas maltophilia R551-3 6478121 YP_002026714.1 CDS rpsU NC_011071.1 391327 391542 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(391327..391542) Stenotrophomonas maltophilia R551-3 6478122 YP_002026715.1 CDS Smal_0327 NC_011071.1 391709 392734 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 391709..392734 Stenotrophomonas maltophilia R551-3 6478123 YP_002026716.1 CDS Smal_0328 NC_011071.1 392872 393537 R PFAM: protein of unknown function DUF1526; KEGG: pst:PSPTO_0149 hypothetical protein; hypothetical protein complement(392872..393537) Stenotrophomonas maltophilia R551-3 6478124 YP_002026717.1 CDS Smal_0329 NC_011071.1 394054 394407 D TIGRFAM: dihydroneopterin aldolase; KEGG: xcb:XC_3887 dihydroneopterin aldolase; dihydroneopterin aldolase 394054..394407 Stenotrophomonas maltophilia R551-3 6478125 YP_002026718.1 CDS Smal_0330 NC_011071.1 394466 395737 D PFAM: MscS Mechanosensitive ion channel; KEGG: mxa:MXAN_4113 mechanosensitive ion channel family protein; mechanosensitive ion channel MscS 394466..395737 Stenotrophomonas maltophilia R551-3 6478126 YP_002026719.1 CDS Smal_0331 NC_011071.1 395866 398040 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: xcb:XC_3886 beta-glucosidase; glycoside hydrolase family 3 395866..398040 Stenotrophomonas maltophilia R551-3 6478127 YP_002026720.1 CDS Smal_0332 NC_011071.1 398172 398708 D KEGG: gvi:gsl1632 hypothetical protein; hypothetical protein 398172..398708 Stenotrophomonas maltophilia R551-3 6478128 YP_002026721.1 CDS Smal_0333 NC_011071.1 398826 399989 R PFAM: glucose sorbosone dehydrogenase; KEGG: xcv:XCV3987 putative secreted protein; glucose sorbosone dehydrogenase complement(398826..399989) Stenotrophomonas maltophilia R551-3 6478129 YP_002026722.1 CDS Smal_0334 NC_011071.1 400160 400612 D PFAM: YiaAB two helix domain protein; KEGG: xcb:XC_3884 membrane protein; YiaAB two helix domain-containing protein 400160..400612 Stenotrophomonas maltophilia R551-3 6478130 YP_002026723.1 CDS Smal_0335 NC_011071.1 400665 400994 R KEGG: xcb:XC_3883 hypothetical protein; hypothetical protein complement(400665..400994) Stenotrophomonas maltophilia R551-3 6478131 YP_002026724.1 CDS Smal_0336 NC_011071.1 401103 402404 R PFAM: amino acid permease-associated region; KEGG: xcb:XC_3881 cationic amino acid transporter; amino acid permease-associated protein complement(401103..402404) Stenotrophomonas maltophilia R551-3 6478132 YP_002026725.1 CDS Smal_0337 NC_011071.1 402401 403162 R KEGG: xcb:XC_3880 hypothetical protein; hypothetical protein complement(402401..403162) Stenotrophomonas maltophilia R551-3 6478133 YP_002026726.1 CDS Smal_0338 NC_011071.1 403178 404026 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sdy:SDY_2751 putative DNA-binding transcriptional regulator; RpiR family transcriptional regulator complement(403178..404026) Stenotrophomonas maltophilia R551-3 6478208 YP_002026727.1 CDS Smal_0339 NC_011071.1 404448 405542 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xcv:XCV3980 putative chloromuconate cycloisomerase; mandelate racemase/muconate lactonizing protein complement(404448..405542) Stenotrophomonas maltophilia R551-3 6478209 YP_002026728.1 CDS Smal_0340 NC_011071.1 405539 406978 R PFAM: NLP/P60 protein; KEGG: xcv:XCV3979 hypothetical protein; NLP/P60 protein complement(405539..406978) Stenotrophomonas maltophilia R551-3 6478210 YP_002026729.1 CDS Smal_0341 NC_011071.1 407240 408601 D PFAM: transglutaminase domain protein; KEGG: bfs:BF2762 putative lipoprotein; transglutaminase domain-containing protein 407240..408601 Stenotrophomonas maltophilia R551-3 6478211 YP_002026730.1 CDS Smal_0342 NC_011071.1 408653 411676 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_3060 TonB-dependent receptor, plug; TonB-dependent receptor plug 408653..411676 Stenotrophomonas maltophilia R551-3 6478212 YP_002026731.1 CDS Smal_0343 NC_011071.1 411732 413285 D PFAM: beta-lactamase; KEGG: pat:Patl_4159 beta-lactamase; beta-lactamase 411732..413285 Stenotrophomonas maltophilia R551-3 6478213 YP_002026732.1 CDS Smal_0344 NC_011071.1 413218 413931 D PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: xcb:XC_3873 D-alanyl-D-alanine dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase 413218..413931 Stenotrophomonas maltophilia R551-3 6478214 YP_002026733.1 CDS Smal_0345 NC_011071.1 414164 414535 D KEGG: xcb:XC_3871 hypothetical protein; hypothetical protein 414164..414535 Stenotrophomonas maltophilia R551-3 6478215 YP_002026734.1 CDS Smal_0346 NC_011071.1 414768 415178 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: xac:XAC3856 hypothetical protein; calcium-binding domain-containing protein 414768..415178 Stenotrophomonas maltophilia R551-3 6478216 YP_002026735.1 CDS Smal_0347 NC_011071.1 415274 416026 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcc:XCC3796 hydrolase, haloacid delahogenase-like family; haloacid dehalogenase domain-containing protein hydrolase 415274..416026 Stenotrophomonas maltophilia R551-3 6478217 YP_002026736.1 CDS Smal_0348 NC_011071.1 416058 416546 D KEGG: xcv:XCV3969 putative secreted protein; hypothetical protein 416058..416546 Stenotrophomonas maltophilia R551-3 6478218 YP_002026737.1 CDS Smal_0349 NC_011071.1 416709 418073 D PFAM: protein of unknown function DUF1338; KEGG: xcc:XCC3793 hypothetical protein; hypothetical protein 416709..418073 Stenotrophomonas maltophilia R551-3 6478219 YP_002026738.1 CDS Smal_0350 NC_011071.1 418193 419707 R KEGG: xcb:XC_0550 CoA tranferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(418193..419707) Stenotrophomonas maltophilia R551-3 6478220 YP_002026739.1 CDS Smal_0351 NC_011071.1 420094 422889 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: xac:XAC0550 glutamine synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 420094..422889 Stenotrophomonas maltophilia R551-3 6478221 YP_002026740.1 CDS Smal_0352 NC_011071.1 423194 423754 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: xac:XAC0551 hypothetical protein; hypothetical protein complement(423194..423754) Stenotrophomonas maltophilia R551-3 6478222 YP_002026741.1 CDS Smal_0353 NC_011071.1 423830 424345 R KEGG: xcv:XCV0584 hypothetical protein; hypothetical protein complement(423830..424345) Stenotrophomonas maltophilia R551-3 6478223 YP_002026742.1 CDS Smal_0354 NC_011071.1 424378 424881 R KEGG: xcc:XCC3602 hypothetical protein; hypothetical protein complement(424378..424881) Stenotrophomonas maltophilia R551-3 6478224 YP_002026743.1 CDS Smal_0355 NC_011071.1 424901 425752 R KEGG: xcv:XCV0585 hypothetical protein; hypothetical protein complement(424901..425752) Stenotrophomonas maltophilia R551-3 6478225 YP_002026744.1 CDS Smal_0356 NC_011071.1 425801 426028 R hypothetical protein complement(425801..426028) Stenotrophomonas maltophilia R551-3 6478226 YP_002026745.1 CDS Smal_0357 NC_011071.1 426228 427193 R PFAM: protein of unknown function DUF1022; KEGG: xcv:XCV0586 hypothetical protein; hypothetical protein complement(426228..427193) Stenotrophomonas maltophilia R551-3 6478227 YP_002026746.1 CDS Smal_0358 NC_011071.1 427315 427905 D PFAM: nitroreductase; KEGG: xcb:XC_0568 hypothetical protein; hypothetical protein 427315..427905 Stenotrophomonas maltophilia R551-3 6478228 YP_002026747.1 CDS Smal_0359 NC_011071.1 427981 428688 D PFAM: YceI family protein; KEGG: xac:XAC0555 hypothetical protein; hypothetical protein 427981..428688 Stenotrophomonas maltophilia R551-3 6478229 YP_002026748.1 CDS Smal_0360 NC_011071.1 429204 429605 R hypothetical protein complement(429204..429605) Stenotrophomonas maltophilia R551-3 6478230 YP_002026749.1 CDS Smal_0361 NC_011071.1 429842 430786 D PFAM: Integrase catalytic region; KEGG: bpe:BP3519 transposase; integrase catalytic subunit 429842..430786 Stenotrophomonas maltophilia R551-3 6478231 YP_002026750.1 CDS Smal_0362 NC_011071.1 430845 431678 D hypothetical protein 430845..431678 Stenotrophomonas maltophilia R551-3 6478232 YP_002026751.1 CDS Smal_0363 NC_011071.1 431753 432550 R PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: xac:XAC0558 iron utilization protein; Siderophore-interacting protein complement(431753..432550) Stenotrophomonas maltophilia R551-3 6478233 YP_002026752.1 CDS Smal_0364 NC_011071.1 432610 433170 R PFAM: transcriptional regulator PadR family protein; KEGG: xcb:XC_0571 hypothetical protein; PadR-like family transcriptional regulator complement(432610..433170) Stenotrophomonas maltophilia R551-3 6478234 YP_002026753.1 CDS aceE NC_011071.1 433739 436426 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 433739..436426 Stenotrophomonas maltophilia R551-3 6478235 YP_002026754.1 CDS Smal_0366 NC_011071.1 436501 439539 D PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shl:Shal_2181 type III restriction protein res subunit; type III restriction protein res subunit 436501..439539 Stenotrophomonas maltophilia R551-3 6478236 YP_002026755.1 CDS Smal_0367 NC_011071.1 439638 440006 R hypothetical protein complement(439638..440006) Stenotrophomonas maltophilia R551-3 6478237 YP_002026756.1 CDS Smal_0368 NC_011071.1 440459 441037 R TIGRFAM: TonB family protein; KEGG: xfn:XfasM23_0009 TonB family protein; TonB family protein complement(440459..441037) Stenotrophomonas maltophilia R551-3 6478238 YP_002026757.1 CDS Smal_0369 NC_011071.1 441159 441806 R KEGG: she:Shewmr4_1721 hypothetical protein; hypothetical protein complement(441159..441806) Stenotrophomonas maltophilia R551-3 6478239 YP_002026758.1 CDS Smal_0370 NC_011071.1 442089 442187 R hypothetical protein complement(442089..442187) Stenotrophomonas maltophilia R551-3 6478240 YP_002026759.1 CDS Smal_0371 NC_011071.1 442710 443714 D KEGG: hha:Hhal_1283 transcriptional regulator-like protein; transcriptional regulator-like protein 442710..443714 Stenotrophomonas maltophilia R551-3 6478241 YP_002026760.1 CDS Smal_0372 NC_011071.1 443803 445566 D KEGG: pap:PSPA7_6053 hypothetical protein; hypothetical protein 443803..445566 Stenotrophomonas maltophilia R551-3 6478242 YP_002026761.1 CDS Smal_0373 NC_011071.1 445563 447776 D KEGG: pap:PSPA7_6054 hypothetical protein; hypothetical protein 445563..447776 Stenotrophomonas maltophilia R551-3 6478243 YP_002026762.1 CDS Smal_0374 NC_011071.1 447773 449638 D KEGG: pap:PSPA7_6055 hypothetical protein; hypothetical protein 447773..449638 Stenotrophomonas maltophilia R551-3 6478244 YP_002026763.1 CDS Smal_0375 NC_011071.1 450169 451359 D KEGG: rpa:RPA2213 hypothetical protein; hypothetical protein 450169..451359 Stenotrophomonas maltophilia R551-3 6478245 YP_002026764.1 CDS Smal_0376 NC_011071.1 451356 453194 D KEGG: bxe:Bxe_A0848 hypothetical protein; hypothetical protein 451356..453194 Stenotrophomonas maltophilia R551-3 6478246 YP_002026765.1 CDS Smal_0377 NC_011071.1 453194 456406 D PFAM: helicase domain protein; KEGG: bxe:Bxe_A0849 hypothetical protein; helicase domain-containing protein 453194..456406 Stenotrophomonas maltophilia R551-3 6478247 YP_002026766.1 CDS Smal_0378 NC_011071.1 456460 457752 R KEGG: xcc:XCC1056 hypothetical protein; hypothetical protein complement(456460..457752) Stenotrophomonas maltophilia R551-3 6478248 YP_002026767.1 CDS Smal_0379 NC_011071.1 457780 458640 R KEGG: xcb:XC_4270 hypothetical protein; hypothetical protein complement(457780..458640) Stenotrophomonas maltophilia R551-3 6478249 YP_002026768.1 CDS Smal_0380 NC_011071.1 458860 459786 D KEGG: xcc:XCC1902 hypothetical protein; hypothetical protein 458860..459786 Stenotrophomonas maltophilia R551-3 6478250 YP_002026769.1 CDS Smal_0381 NC_011071.1 459952 461097 D KEGG: spe:Spro_0979 hypothetical protein; hypothetical protein 459952..461097 Stenotrophomonas maltophilia R551-3 6478251 YP_002026770.1 CDS Smal_0382 NC_011071.1 461241 461816 D KEGG: xcv:XCV1271 putative secreted protein; hypothetical protein 461241..461816 Stenotrophomonas maltophilia R551-3 6478252 YP_002026771.1 CDS Smal_0383 NC_011071.1 461894 462469 D KEGG: xcv:XCV1271 putative secreted protein; hypothetical protein 461894..462469 Stenotrophomonas maltophilia R551-3 6478253 YP_002026772.1 CDS Smal_0384 NC_011071.1 462510 463577 D KEGG: xcb:XC_3104 hypothetical protein; hypothetical protein 462510..463577 Stenotrophomonas maltophilia R551-3 6478254 YP_002026773.1 CDS Smal_0385 NC_011071.1 463641 464057 R KEGG: xcc:XCC1056 hypothetical protein; hypothetical protein complement(463641..464057) Stenotrophomonas maltophilia R551-3 6478255 YP_002026774.1 CDS Smal_0386 NC_011071.1 464133 464612 R KEGG: ccr:CC_0890 hypothetical protein; hypothetical protein complement(464133..464612) Stenotrophomonas maltophilia R551-3 6478256 YP_002026775.1 CDS Smal_0387 NC_011071.1 464835 465644 D PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_1933 putative arylesterase; alpha/beta hydrolase fold domain-containing protein 464835..465644 Stenotrophomonas maltophilia R551-3 6478257 YP_002026776.1 CDS Smal_0388 NC_011071.1 465764 466714 D KEGG: plu:plu4879 hypothetical protein; hypothetical protein 465764..466714 Stenotrophomonas maltophilia R551-3 6478258 YP_002026777.1 CDS Smal_0389 NC_011071.1 466959 467576 D hypothetical protein 466959..467576 Stenotrophomonas maltophilia R551-3 6478259 YP_002026778.1 CDS Smal_0390 NC_011071.1 467606 468265 D hypothetical protein 467606..468265 Stenotrophomonas maltophilia R551-3 6478260 YP_002026779.1 CDS Smal_0391 NC_011071.1 468400 469368 D PFAM: polysaccharide deacetylase; KEGG: aba:Acid345_1565 polysaccharide deacetylase; polysaccharide deacetylase 468400..469368 Stenotrophomonas maltophilia R551-3 6478261 YP_002026780.1 CDS Smal_0392 NC_011071.1 469372 470214 R KEGG: xcv:XCV0651 hypothetical protein; hypothetical protein complement(469372..470214) Stenotrophomonas maltophilia R551-3 6478262 YP_002026781.1 CDS Smal_0393 NC_011071.1 470669 471331 R hypothetical protein complement(470669..471331) Stenotrophomonas maltophilia R551-3 6478263 YP_002026782.1 CDS Smal_0394 NC_011071.1 471443 471859 R KEGG: pcr:Pcryo_0856 hypothetical protein; hypothetical protein complement(471443..471859) Stenotrophomonas maltophilia R551-3 6478264 YP_002026783.1 CDS Smal_0395 NC_011071.1 471950 472234 D KEGG: xcb:XC_0620 hypothetical protein; hypothetical protein 471950..472234 Stenotrophomonas maltophilia R551-3 6478265 YP_002026784.1 CDS Smal_0396 NC_011071.1 472323 473297 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcb:XC_4064 heavy metal transporter; cation diffusion facilitator family transporter complement(472323..473297) Stenotrophomonas maltophilia R551-3 6478266 YP_002026785.1 CDS Smal_0397 NC_011071.1 473346 473630 D PFAM: protein of unknown function DUF156; KEGG: cph:Cpha266_2130 protein of unknown function DUF156; hypothetical protein 473346..473630 Stenotrophomonas maltophilia R551-3 6478267 YP_002026786.1 CDS Smal_0398 NC_011071.1 474092 474466 R KEGG: xcv:XCV0283 hypothetical protein; hypothetical protein complement(474092..474466) Stenotrophomonas maltophilia R551-3 6478268 YP_002026787.1 CDS Smal_0399 NC_011071.1 474536 475861 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: xom:XOO_4133 nitrile hydratase activator; cobalamin synthesis protein P47K 474536..475861 Stenotrophomonas maltophilia R551-3 6478269 YP_002026788.1 CDS Smal_0400 NC_011071.1 475966 477573 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cti:RALTA_B0293 putative ABC transporter ATP-binding protein; ABC transporter-like protein complement(475966..477573) Stenotrophomonas maltophilia R551-3 6478270 YP_002026789.1 CDS Smal_0401 NC_011071.1 477814 478713 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_A5921 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(477814..478713) Stenotrophomonas maltophilia R551-3 6478271 YP_002026790.1 CDS Smal_0402 NC_011071.1 478941 480119 D PFAM: beta-lactamase; KEGG: bcm:Bcenmc03_4045 beta-lactamase; beta-lactamase 478941..480119 Stenotrophomonas maltophilia R551-3 6478272 YP_002026791.1 CDS Smal_0403 NC_011071.1 480116 481300 D PFAM: major facilitator superfamily MFS_1; KEGG: shw:Sputw3181_2194 major facilitator superfamily MFS_1; major facilitator superfamily protein 480116..481300 Stenotrophomonas maltophilia R551-3 6478273 YP_002026792.1 CDS Smal_0404 NC_011071.1 481619 483235 R PFAM: EAL domain protein; KEGG: swi:Swit_2925 EAL domain protein; EAL domain-containing protein complement(481619..483235) Stenotrophomonas maltophilia R551-3 6478274 YP_002026793.1 CDS Smal_0405 NC_011071.1 483465 484838 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 483465..484838 Stenotrophomonas maltophilia R551-3 6478275 YP_002026794.1 CDS Smal_0406 NC_011071.1 485157 485933 D PFAM: Lytic transglycosylase catalytic; KEGG: xfm:Xfasm12_1946 soluble lytic murein transglycosylase precursor; Lytic transglycosylase 485157..485933 Stenotrophomonas maltophilia R551-3 6478276 YP_002026795.1 CDS Smal_0407 NC_011071.1 486028 487548 R KEGG: cak:Caul_4326 tetratricopeptide TPR_4; hypothetical protein complement(486028..487548) Stenotrophomonas maltophilia R551-3 6478277 YP_002026796.1 CDS Smal_0408 NC_011071.1 487716 489797 D PFAM: NHL repeat containing protein; SMP-30/Gluconolaconase/LRE domain protein; KEGG: ote:Oter_2854 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 487716..489797 Stenotrophomonas maltophilia R551-3 6478278 YP_002026797.1 CDS Smal_0409 NC_011071.1 489775 490182 R PFAM: DGPFAETKE family protein; KEGG: xcb:XC_3733 hypothetical protein; DGPFAETKE family protein complement(489775..490182) Stenotrophomonas maltophilia R551-3 6478279 YP_002026798.1 CDS Smal_0410 NC_011071.1 490914 491327 D PFAM: DGPFAETKE family protein; KEGG: bvi:Bcep1808_3442 DGPFAETKE family protein; DGPFAETKE family protein 490914..491327 Stenotrophomonas maltophilia R551-3 6478280 YP_002026799.1 CDS Smal_0411 NC_011071.1 491397 491819 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpe:RPE_4736 glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase 491397..491819 Stenotrophomonas maltophilia R551-3 6478281 YP_002026800.1 CDS Smal_0412 NC_011071.1 491854 492264 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0020 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 491854..492264 Stenotrophomonas maltophilia R551-3 6478282 YP_002026801.1 CDS Smal_0413 NC_011071.1 492288 492644 D PFAM: protein of unknown function DUF1428; KEGG: rpe:RPE_4844 protein of unknown function DUF1428; hypothetical protein 492288..492644 Stenotrophomonas maltophilia R551-3 6478283 YP_002026802.1 CDS Smal_0414 NC_011071.1 492690 493952 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bmu:Bmul_4925 putative RNA polymerase, sigma-24 subunit, ECF subfamily; putative ECF subfamily RNA polymerase sigma-24 subunit 492690..493952 Stenotrophomonas maltophilia R551-3 6478284 YP_002026803.1 CDS Smal_0415 NC_011071.1 494060 495256 D KEGG: rme:Rmet_5702 hypothetical protein; hypothetical protein 494060..495256 Stenotrophomonas maltophilia R551-3 6478285 YP_002026804.1 CDS Smal_0416 NC_011071.1 495247 496347 D KEGG: rme:Rmet_5701 hypothetical protein; hypothetical protein 495247..496347 Stenotrophomonas maltophilia R551-3 6478286 YP_002026805.1 CDS Smal_0417 NC_011071.1 496482 497159 D KEGG: dac:Daci_1236 hypothetical protein; hypothetical protein 496482..497159 Stenotrophomonas maltophilia R551-3 6478287 YP_002026806.1 CDS Smal_0418 NC_011071.1 497176 498831 D KEGG: dac:Daci_1237 hypothetical protein; hypothetical protein 497176..498831 Stenotrophomonas maltophilia R551-3 6478288 YP_002026807.1 CDS Smal_0419 NC_011071.1 499213 500862 D PFAM: peptidase M28; KEGG: xac:XAC0615 aminopeptidase; peptidase M28 499213..500862 Stenotrophomonas maltophilia R551-3 6478289 YP_002026808.1 CDS Smal_0420 NC_011071.1 501075 502334 D PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: xcv:XCV3840 putative two-component system sensor kinase; signal transduction histidine kinase LytS 501075..502334 Stenotrophomonas maltophilia R551-3 6478372 YP_002026809.1 CDS Smal_0421 NC_011071.1 502324 503094 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: xcb:XC_3747 transcriptional regulator protein; LytTR family two component transcriptional regulator 502324..503094 Stenotrophomonas maltophilia R551-3 6478373 YP_002026810.1 CDS Smal_0422 NC_011071.1 503128 503472 D KEGG: xcv:XCV3838 putative secreted protein; hypothetical protein 503128..503472 Stenotrophomonas maltophilia R551-3 6478374 YP_002026811.1 CDS Smal_0423 NC_011071.1 503512 504126 R KEGG: xcb:XC_3744 hypothetical protein; hypothetical protein complement(503512..504126) Stenotrophomonas maltophilia R551-3 6478375 YP_002026812.1 CDS Smal_0424 NC_011071.1 504436 505365 D KEGG: xcv:XCV3835 hypothetical protein; hypothetical protein 504436..505365 Stenotrophomonas maltophilia R551-3 6478376 YP_002026813.1 CDS Smal_0425 NC_011071.1 505477 506064 R PFAM: regulatory protein TetR; KEGG: eca:ECA1819 TetR-family transcriptional regulator; TetR family transcriptional regulator complement(505477..506064) Stenotrophomonas maltophilia R551-3 6478377 YP_002026814.1 CDS Smal_0426 NC_011071.1 506198 507412 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1818 putative transporter; major facilitator superfamily protein 506198..507412 Stenotrophomonas maltophilia R551-3 6478378 YP_002026815.1 CDS Smal_0427 NC_011071.1 507409 508581 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1817 probable transporter; major facilitator superfamily protein 507409..508581 Stenotrophomonas maltophilia R551-3 6478379 YP_002026816.1 CDS Smal_0428 NC_011071.1 508713 510824 R PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcb:XC_3742 metallopeptidase; endothelin-converting enzyme 1 complement(508713..510824) Stenotrophomonas maltophilia R551-3 6478380 YP_002026817.1 CDS Smal_0429 NC_011071.1 511001 514063 D KEGG: mms:mma_2307 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 511001..514063 Stenotrophomonas maltophilia R551-3 6478381 YP_002026818.1 CDS Smal_0430 NC_011071.1 514157 515038 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3828 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(514157..515038) Stenotrophomonas maltophilia R551-3 6478382 YP_002026819.1 CDS Smal_0431 NC_011071.1 515136 515546 D PFAM: DoxX family protein; KEGG: xac:XAC3707 hypothetical protein; DoxX family protein 515136..515546 Stenotrophomonas maltophilia R551-3 6478383 YP_002026820.1 CDS Smal_0432 NC_011071.1 515578 516366 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: xom:XOO_0607 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 515578..516366 Stenotrophomonas maltophilia R551-3 6478384 YP_002026821.1 CDS Smal_0433 NC_011071.1 516484 518133 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: xoo:XOO0675 Na+:H+ antiporter; Na+/H+ antiporter 516484..518133 Stenotrophomonas maltophilia R551-3 6478385 YP_002026822.1 CDS Smal_0434 NC_011071.1 518201 518449 R KEGG: xcb:XC_3729 hypothetical protein; hypothetical protein complement(518201..518449) Stenotrophomonas maltophilia R551-3 6478386 YP_002026823.1 CDS Smal_0435 NC_011071.1 518539 519081 D KEGG: xcb:XC_3728 hypothetical protein; hypothetical protein 518539..519081 Stenotrophomonas maltophilia R551-3 6478387 YP_002026824.1 CDS Smal_0436 NC_011071.1 519163 519438 R KEGG: xom:XOO_0622 hypothetical protein; hypothetical protein complement(519163..519438) Stenotrophomonas maltophilia R551-3 6478388 YP_002026825.1 CDS Smal_0437 NC_011071.1 519452 519964 R KEGG: xcv:XCV3816 hypothetical protein; hypothetical protein complement(519452..519964) Stenotrophomonas maltophilia R551-3 6478389 YP_002026826.1 CDS motB NC_011071.1 520096 521052 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(520096..521052) Stenotrophomonas maltophilia R551-3 6478390 YP_002026827.1 CDS Smal_0439 NC_011071.1 521056 521910 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(521056..521910) Stenotrophomonas maltophilia R551-3 6478391 YP_002026828.1 CDS Smal_0440 NC_011071.1 522002 522469 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(522002..522469) Stenotrophomonas maltophilia R551-3 6478392 YP_002026829.1 CDS Smal_0441 NC_011071.1 522610 522978 D KEGG: xcb:XC_3721 hypothetical protein; hypothetical protein 522610..522978 Stenotrophomonas maltophilia R551-3 6478393 YP_002026830.1 CDS Smal_0442 NC_011071.1 523166 523318 D KEGG: ddi:DDBDRAFT_0204126 hypothetical protein; hypothetical protein 523166..523318 Stenotrophomonas maltophilia R551-3 6478394 YP_002026831.1 CDS Smal_0443 NC_011071.1 523436 523915 R PFAM: regulatory protein AsnC/Lrp family; KEGG: xcv:XCV3810 leucine-responsive regulatory protein, AsnC family; AsnC family transcriptional regulator complement(523436..523915) Stenotrophomonas maltophilia R551-3 6478395 YP_002026832.1 CDS Smal_0444 NC_011071.1 524065 525369 D PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_6038 D-amino acid dehydrogenase small subunit; D-amino-acid dehydrogenase 524065..525369 Stenotrophomonas maltophilia R551-3 6478396 YP_002026833.1 CDS alr NC_011071.1 525348 526415 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 525348..526415 Stenotrophomonas maltophilia R551-3 6478397 YP_002026834.1 CDS Smal_0446 NC_011071.1 526518 527081 R KEGG: xac:XAC3686 hypothetical protein; hypothetical protein complement(526518..527081) Stenotrophomonas maltophilia R551-3 6478398 YP_002026835.1 CDS Smal_0447 NC_011071.1 527326 529314 D KEGG: xcv:XCV3804 two-component system sensor histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 527326..529314 Stenotrophomonas maltophilia R551-3 6478399 YP_002026836.1 CDS Smal_0448 NC_011071.1 529358 529651 D KEGG: xcb:XC_3713 hypothetical protein; hypothetical protein 529358..529651 Stenotrophomonas maltophilia R551-3 6478400 YP_002026837.1 CDS Smal_0449 NC_011071.1 529737 530000 R KEGG: xcb:XC_3711 hypothetical protein; hypothetical protein complement(529737..530000) Stenotrophomonas maltophilia R551-3 6478401 YP_002026838.1 CDS Smal_0450 NC_011071.1 530159 531229 D PFAM: methyltransferase small; Methyltransferase type 12; KEGG: xac:XAC3679 ribosomal RNA small subunit methyltransferase C; methyltransferase small 530159..531229 Stenotrophomonas maltophilia R551-3 6478402 YP_002026839.1 CDS Smal_0451 NC_011071.1 531226 531927 D PFAM: pseudouridine synthase; KEGG: xcb:XC_3709 ribosomal small subunit pseudouridylate synthase; pseudouridine synthase 531226..531927 Stenotrophomonas maltophilia R551-3 6478403 YP_002026840.1 CDS Smal_0452 NC_011071.1 531924 532607 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcb:XC_3708 hydrolase; HAD-superfamily hydrolase 531924..532607 Stenotrophomonas maltophilia R551-3 6478404 YP_002026841.1 CDS Smal_0453 NC_011071.1 532735 533943 R PFAM: Beta-ketoacyl synthase; KEGG: xcb:XC_3652 beta-ketoacyl-[ACP] synthase I; beta-ketoacyl synthase complement(532735..533943) Stenotrophomonas maltophilia R551-3 6478405 YP_002026842.1 CDS Smal_0454 NC_011071.1 533943 534458 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(533943..534458) Stenotrophomonas maltophilia R551-3 6478406 YP_002026843.1 CDS Smal_0455 NC_011071.1 534649 535719 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 534649..535719 Stenotrophomonas maltophilia R551-3 6478407 YP_002026844.1 CDS Smal_0456 NC_011071.1 535982 536893 R PFAM: beta-lactamase domain protein; KEGG: pfo:PflO1_4474 beta-lactamase-like; beta-lactamase domain-containing protein complement(535982..536893) Stenotrophomonas maltophilia R551-3 6478408 YP_002026845.1 CDS Smal_0457 NC_011071.1 536979 537617 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: bte:BTH_I2861 hypothetical protein; NAD-dependent epimerase/dehydratase complement(536979..537617) Stenotrophomonas maltophilia R551-3 6478409 YP_002026846.1 CDS Smal_0458 NC_011071.1 537726 538655 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB3251 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 537726..538655 Stenotrophomonas maltophilia R551-3 6478410 YP_002026847.1 CDS Smal_0459 NC_011071.1 538652 539443 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dac:Daci_4070 methyltransferase type 11; type 11 methyltransferase 538652..539443 Stenotrophomonas maltophilia R551-3 6478411 YP_002026848.1 CDS Smal_0460 NC_011071.1 539475 540164 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xcc:XCC0584 phosphoglycolate phosphatase; phosphoglycolate phosphatase 539475..540164 Stenotrophomonas maltophilia R551-3 6478412 YP_002026849.1 CDS Smal_0461 NC_011071.1 540306 542147 R TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1091 outer membrane receptor for transport of vitamin B; TonB-dependent vitamin B12 receptor complement(540306..542147) Stenotrophomonas maltophilia R551-3 6478413 YP_002026850.1 CDS Smal_0462 NC_011071.1 542619 543197 D PFAM: Phosphoglycerate mutase; KEGG: bbt:BBta_3134 putative alpha-ribazole phosphatase (anaerobic pathway of cobalamin biosynthesis, CobC); phosphoglycerate mutase 542619..543197 Stenotrophomonas maltophilia R551-3 6478414 YP_002026851.1 CDS Smal_0463 NC_011071.1 543282 543644 R PFAM: TfoX domain protein; KEGG: xcb:XC_3648 hypothetical protein; TfoX domain-containing protein complement(543282..543644) Stenotrophomonas maltophilia R551-3 6478415 YP_002026852.1 CDS Smal_0464 NC_011071.1 543641 544123 R PFAM: GAF domain protein; KEGG: xom:XOO_0696 hypothetical protein; putative GAF sensor protein complement(543641..544123) Stenotrophomonas maltophilia R551-3 6478416 YP_002026853.1 CDS bioD NC_011071.1 544192 544884 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 544192..544884 Stenotrophomonas maltophilia R551-3 6478417 YP_002026854.1 CDS Smal_0466 NC_011071.1 544961 546403 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cvi:CV_1900 probable transcriptional regulator; GntR family transcriptional regulator complement(544961..546403) Stenotrophomonas maltophilia R551-3 6478418 YP_002026855.1 CDS Smal_0467 NC_011071.1 546609 547346 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: dac:Daci_3068 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase complement(546609..547346) Stenotrophomonas maltophilia R551-3 6478419 YP_002026856.1 CDS Smal_0468 NC_011071.1 547361 549130 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: rme:Rmet_1170 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane region complement(547361..549130) Stenotrophomonas maltophilia R551-3 6478420 YP_002026857.1 CDS Smal_0469 NC_011071.1 549133 549705 R TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: nha:Nham_1330 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(549133..549705) Stenotrophomonas maltophilia R551-3 6478421 YP_002026858.1 CDS Smal_0470 NC_011071.1 549850 550569 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpt:Bpet2466 two-component response regulator; winged helix family two component transcriptional regulator 549850..550569 Stenotrophomonas maltophilia R551-3 6478422 YP_002026859.1 CDS Smal_0471 NC_011071.1 550566 552035 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bac:BamMC406_5549 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 550566..552035 Stenotrophomonas maltophilia R551-3 6478423 YP_002026860.1 CDS Smal_0472 NC_011071.1 552032 553378 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cvi:CV_0760 probable two-component sensor protein; integral membrane sensor signal transduction histidine kinase complement(552032..553378) Stenotrophomonas maltophilia R551-3 6478424 YP_002026861.1 CDS Smal_0473 NC_011071.1 553375 554064 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cvi:CV_0761 probable two-component response regulator; winged helix family two component transcriptional regulator complement(553375..554064) Stenotrophomonas maltophilia R551-3 6478425 YP_002026862.1 CDS Smal_0474 NC_011071.1 554414 556315 D PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: xcb:XC_2806 asparagine synthase; asparagine synthase 554414..556315 Stenotrophomonas maltophilia R551-3 6478426 YP_002026863.1 CDS Smal_0475 NC_011071.1 556763 557110 R KEGG: xac:XAC3615 hypothetical protein; hypothetical protein complement(556763..557110) Stenotrophomonas maltophilia R551-3 6478427 YP_002026864.1 CDS Smal_0476 NC_011071.1 557227 557589 R TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xom:XOO_0699 6-pyruvoyl tetrahydrobiopterin synthase; queuosine biosynthesis protein QueD complement(557227..557589) Stenotrophomonas maltophilia R551-3 6478428 YP_002026865.1 CDS Smal_0477 NC_011071.1 557781 560420 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3613 TonB-dependent receptor; TonB-dependent receptor 557781..560420 Stenotrophomonas maltophilia R551-3 6478429 YP_002026866.1 CDS Smal_0478 NC_011071.1 560495 563086 D SMART: peptidase M14 carboxypeptidase A; KEGG: ilo:IL0695 secreted protein containing N-terminal zinc-dependent carboxypeptidase related domain; peptidase M14 carboxypeptidase A 560495..563086 Stenotrophomonas maltophilia R551-3 6478430 YP_002026867.1 CDS Smal_0479 NC_011071.1 563262 564176 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: amr:AM1_6037 transposase, IS116/IS110/IS902 family; transposase IS116/IS110/IS902 family protein complement(563262..564176) Stenotrophomonas maltophilia R551-3 6478431 YP_002026868.1 CDS Smal_0480 NC_011071.1 564863 566278 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV3733 ATP-dependent RNA helicase; DEAD/DEAH box helicase complement(564863..566278) Stenotrophomonas maltophilia R551-3 6478432 YP_002026869.1 CDS Smal_0481 NC_011071.1 567174 568163 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: xac:XAC3609 fumarylacetoacetate hydrolase; fumarylacetoacetate (FAA) hydrolase 567174..568163 Stenotrophomonas maltophilia R551-3 6478433 YP_002026870.1 CDS Smal_0482 NC_011071.1 568178 568846 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV3731 maleylacetoacetate isomerase; maleylacetoacetate isomerase 568178..568846 Stenotrophomonas maltophilia R551-3 6478434 YP_002026871.1 CDS Smal_0483 NC_011071.1 568924 570051 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: xcv:XCV3730 Tfp pilus assembly protein; twitching motility protein complement(568924..570051) Stenotrophomonas maltophilia R551-3 6478435 YP_002026872.1 CDS Smal_0484 NC_011071.1 570173 570538 D KEGG: xac:XAC3606 outer membran protein; outer membrane protein 570173..570538 Stenotrophomonas maltophilia R551-3 6478436 YP_002026873.1 CDS Smal_0485 NC_011071.1 570535 571419 D PFAM: OmpA/MotB domain protein; KEGG: xcb:XC_3638 outer membrane protein; OmpA/MotB domain-containing protein 570535..571419 Stenotrophomonas maltophilia R551-3 6478437 YP_002026874.1 CDS Smal_0486 NC_011071.1 571586 571750 D hypothetical protein 571586..571750 Stenotrophomonas maltophilia R551-3 6478438 YP_002026875.1 CDS Smal_0487 NC_011071.1 571743 571979 D PFAM: protein of unknown function DUF465; KEGG: xcb:XC_3637 hypothetical protein; hypothetical protein 571743..571979 Stenotrophomonas maltophilia R551-3 6478439 YP_002026876.1 CDS Smal_0488 NC_011071.1 572346 573716 D PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_3636 cystathionine beta-synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 572346..573716 Stenotrophomonas maltophilia R551-3 6478440 YP_002026877.1 CDS Smal_0489 NC_011071.1 573840 575012 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: xcb:XC_3635 cystathionine gamma-lyase-like protein; cystathionine gamma-lyase 573840..575012 Stenotrophomonas maltophilia R551-3 6478441 YP_002026878.1 CDS Smal_0490 NC_011071.1 575009 575869 D PFAM: ABC-2 type transporter; KEGG: nha:Nham_2778 ABC-2; ABC-2 type transporter 575009..575869 Stenotrophomonas maltophilia R551-3 6478442 YP_002026879.1 CDS Smal_0491 NC_011071.1 575874 576599 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1877 ABC transporter ATPase; ABC transporter-like protein 575874..576599 Stenotrophomonas maltophilia R551-3 6478443 YP_002026880.1 CDS Smal_0492 NC_011071.1 576600 578840 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_4620 hypothetical protein; type 12 methyltransferase 576600..578840 Stenotrophomonas maltophilia R551-3 6477396 YP_002026881.1 CDS Smal_0493 NC_011071.1 578843 581014 D PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_4619 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 578843..581014 Stenotrophomonas maltophilia R551-3 6477397 YP_002026882.1 CDS Smal_0494 NC_011071.1 581034 583058 D PFAM: glycosyl transferase family 2; KEGG: mxa:MXAN_4619 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 581034..583058 Stenotrophomonas maltophilia R551-3 6477398 YP_002026883.1 CDS Smal_0495 NC_011071.1 583105 584115 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dac:Daci_5547 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(583105..584115) Stenotrophomonas maltophilia R551-3 6477399 YP_002026884.1 CDS Smal_0496 NC_011071.1 584297 585895 D KEGG: mav:MAV_0212 hypothetical protein; hypothetical protein 584297..585895 Stenotrophomonas maltophilia R551-3 6477400 YP_002026885.1 CDS Smal_0497 NC_011071.1 586256 586684 R KEGG: maq:Maqu_1646 hypothetical protein; hypothetical protein complement(586256..586684) Stenotrophomonas maltophilia R551-3 6477401 YP_002026886.1 CDS Smal_0498 NC_011071.1 586681 587412 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC3591 short chain dehydrogenase; short chain dehydrogenase complement(586681..587412) Stenotrophomonas maltophilia R551-3 6477402 YP_002026887.1 CDS Smal_0499 NC_011071.1 587415 588728 R PFAM: FAD linked oxidase domain protein; KEGG: xac:XAC3590 oxidoreductase; FAD linked oxidase domain-containing protein complement(587415..588728) Stenotrophomonas maltophilia R551-3 6477403 YP_002026888.1 CDS Smal_0500 NC_011071.1 588725 590143 R PFAM: UbiA prenyltransferase; KEGG: xac:XAC3589 hypothetical protein; hypothetical protein complement(588725..590143) Stenotrophomonas maltophilia R551-3 6477404 YP_002026889.1 CDS Smal_0501 NC_011071.1 590536 591474 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: xcb:XC_3615 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha complement(590536..591474) Stenotrophomonas maltophilia R551-3 6477405 YP_002026890.1 CDS Smal_0502 NC_011071.1 591474 592220 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: xac:XAC3586 electron transfer flavoprotein beta subunit; electron transfer flavoprotein subunit alpha/beta complement(591474..592220) Stenotrophomonas maltophilia R551-3 6477406 YP_002026891.1 CDS Smal_0503 NC_011071.1 592506 593561 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xcv:XCV3709 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 592506..593561 Stenotrophomonas maltophilia R551-3 6477407 YP_002026892.1 CDS Smal_0504 NC_011071.1 593576 594463 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: xom:XOO_0721 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 593576..594463 Stenotrophomonas maltophilia R551-3 6477408 YP_002026893.1 CDS Smal_0505 NC_011071.1 594460 595017 D KEGG: xac:XAC3583 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 594460..595017 Stenotrophomonas maltophilia R551-3 6477409 YP_002026894.1 CDS Smal_0506 NC_011071.1 595014 595952 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xac:XAC3582 dTDP-4-keto-L-rhamnose reductase; dTDP-4-dehydrorhamnose reductase 595014..595952 Stenotrophomonas maltophilia R551-3 6477410 YP_002026895.1 CDS Smal_0507 NC_011071.1 596071 597909 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 596071..597909 Stenotrophomonas maltophilia R551-3 6477411 YP_002026896.1 CDS Smal_0508 NC_011071.1 598002 599405 R KEGG: xcb:XC_3609 phosphomannose isomerase/GDP-mannose pyrophosphorylase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(598002..599405) Stenotrophomonas maltophilia R551-3 6477412 YP_002026897.1 CDS Smal_0509 NC_011071.1 599417 600763 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: xcb:XC_3608 phosphoglucomutase; phosphomannomutase; phosphomannomutase complement(599417..600763) Stenotrophomonas maltophilia R551-3 6477413 YP_002026898.1 CDS Smal_0510 NC_011071.1 600995 601951 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xfa:XF0611 dTDP-glucose 4-6-dehydratase; NAD-dependent epimerase/dehydratase 600995..601951 Stenotrophomonas maltophilia R551-3 6477414 YP_002026899.1 CDS Smal_0511 NC_011071.1 601962 602906 D PFAM: glycosyl transferase family 2; KEGG: xfa:XF0612 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase 601962..602906 Stenotrophomonas maltophilia R551-3 6477415 YP_002026900.1 CDS Smal_0512 NC_011071.1 602884 603288 D PFAM: GtrA family protein; KEGG: xfn:XfasM23_1626 GtrA family protein; GtrA family protein 602884..603288 Stenotrophomonas maltophilia R551-3 6477416 YP_002026901.1 CDS Smal_0513 NC_011071.1 603285 603884 D KEGG: xfm:Xfasm12_1695 hypothetical protein; hypothetical protein 603285..603884 Stenotrophomonas maltophilia R551-3 6477417 YP_002026902.1 CDS Smal_0514 NC_011071.1 603934 604359 D hypothetical protein 603934..604359 Stenotrophomonas maltophilia R551-3 6477418 YP_002026903.1 CDS Smal_0515 NC_011071.1 604334 605536 D KEGG: sus:Acid_7379 hypothetical protein; hypothetical protein 604334..605536 Stenotrophomonas maltophilia R551-3 6477419 YP_002026904.1 CDS Smal_0516 NC_011071.1 605567 608881 R KEGG: bxe:Bxe_B1664 putative helicase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase complement(605567..608881) Stenotrophomonas maltophilia R551-3 6477420 YP_002026905.1 CDS Smal_0517 NC_011071.1 609042 609773 D KEGG: xom:XOO_0726 IpsJ protein; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 609042..609773 Stenotrophomonas maltophilia R551-3 6477421 YP_002026906.1 CDS Smal_0518 NC_011071.1 609775 610407 D KEGG: xcb:XC_3606 IpsJ protein; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 609775..610407 Stenotrophomonas maltophilia R551-3 6477422 YP_002026907.1 CDS Smal_0519 NC_011071.1 610418 612478 R KEGG: xom:XOO_0728 hypothetical protein; hypothetical protein complement(610418..612478) Stenotrophomonas maltophilia R551-3 6477423 YP_002026908.1 CDS Smal_0520 NC_011071.1 612595 613182 D PFAM: 2OG-Fe(II) oxygenase; KEGG: xac:XAC3574 DNA repair system specific for alkylated DNA; 2OG-Fe(II) oxygenase 612595..613182 Stenotrophomonas maltophilia R551-3 6477424 YP_002026909.1 CDS Smal_0521 NC_011071.1 613254 613895 R PFAM: protein of unknown function DUF330; KEGG: xcb:XC_3602 hypothetical protein; hypothetical protein complement(613254..613895) Stenotrophomonas maltophilia R551-3 6477425 YP_002026910.1 CDS Smal_0522 NC_011071.1 613892 614818 R PFAM: Mammalian cell entry related domain protein; KEGG: xac:XAC3572 hypothetical protein; mammalian cell entry domain-containing protein complement(613892..614818) Stenotrophomonas maltophilia R551-3 6477426 YP_002026911.1 CDS Smal_0523 NC_011071.1 614822 615649 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3571 ABC transporter ATP-binding protein; ABC transporter-like protein complement(614822..615649) Stenotrophomonas maltophilia R551-3 6477427 YP_002026912.1 CDS Smal_0524 NC_011071.1 615651 616772 R PFAM: protein of unknown function DUF140; KEGG: xac:XAC3570 ABC transporter permease; hypothetical protein complement(615651..616772) Stenotrophomonas maltophilia R551-3 6477428 YP_002026913.1 CDS Smal_0525 NC_011071.1 616865 618124 D PFAM: protein of unknown function DUF1212; KEGG: xcb:XC_3598 hypothetical protein; hypothetical protein 616865..618124 Stenotrophomonas maltophilia R551-3 6477429 YP_002026914.1 CDS Smal_0526 NC_011071.1 618255 618638 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: xcb:XC_3597 DNA-binding protein; histone family protein nucleoid-structuring protein H-NS complement(618255..618638) Stenotrophomonas maltophilia R551-3 6477430 YP_002026915.1 CDS Smal_0527 NC_011071.1 618861 620564 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(618861..620564) Stenotrophomonas maltophilia R551-3 6477431 YP_002026916.1 CDS Smal_0528 NC_011071.1 621158 621532 R KEGG: xfn:XfasM23_1728 hypothetical protein; hypothetical protein complement(621158..621532) Stenotrophomonas maltophilia R551-3 6477432 YP_002026917.1 CDS Smal_0529 NC_011071.1 621613 622389 D TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xac:XAC3565 phosphatidylserine synthase; CDP-diacylglycerol/serine O-phosphatidyltransferase 621613..622389 Stenotrophomonas maltophilia R551-3 6477433 YP_002026918.1 CDS Smal_0530 NC_011071.1 622386 622889 D KEGG: xom:XOO_0740 hypothetical protein; hypothetical protein 622386..622889 Stenotrophomonas maltophilia R551-3 6477434 YP_002026919.1 CDS Smal_0531 NC_011071.1 622886 623383 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3688 putative acetyltransferase; ribosomal-protein-alanine acetyltransferase 622886..623383 Stenotrophomonas maltophilia R551-3 6477435 YP_002026920.1 CDS Smal_0532 NC_011071.1 623451 624272 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: cti:RALTA_B0369 putative transmembrane protein; hypothetical protein complement(623451..624272) Stenotrophomonas maltophilia R551-3 6477436 YP_002026921.1 CDS valS NC_011071.1 624366 627194 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(624366..627194) Stenotrophomonas maltophilia R551-3 6477437 YP_002026922.1 CDS Smal_0534 NC_011071.1 627228 627419 R KEGG: bmn:BMA10247_A2104 hypothetical protein; hypothetical protein complement(627228..627419) Stenotrophomonas maltophilia R551-3 6477438 YP_002026923.1 CDS Smal_0535 NC_011071.1 627439 627864 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(627439..627864) Stenotrophomonas maltophilia R551-3 6477439 YP_002026924.1 CDS Smal_0536 NC_011071.1 627947 629425 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(627947..629425) Stenotrophomonas maltophilia R551-3 6477440 YP_002026925.1 CDS Smal_0537 NC_011071.1 629530 630612 D PFAM: permease YjgP/YjgQ family protein; KEGG: xcb:XC_3584 hypothetical protein; YjgP/YjgQ family permease 629530..630612 Stenotrophomonas maltophilia R551-3 6477441 YP_002026926.1 CDS Smal_0538 NC_011071.1 630609 631715 D PFAM: permease YjgP/YjgQ family protein; KEGG: xcb:XC_3583 hypothetical protein; YjgP/YjgQ family permease 630609..631715 Stenotrophomonas maltophilia R551-3 6477442 YP_002026927.1 CDS Smal_0539 NC_011071.1 631798 632289 R PFAM: RDD domain containing protein; KEGG: xom:XOO_0763 hypothetical protein; RDD domain-containing protein complement(631798..632289) Stenotrophomonas maltophilia R551-3 6477443 YP_002026928.1 CDS xerD NC_011071.1 632346 633323 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 632346..633323 Stenotrophomonas maltophilia R551-3 6477444 YP_002026929.1 CDS Smal_0541 NC_011071.1 633424 634215 D KEGG: xcv:XCV3675 protein disulfide isomerase precursor; protein disulfide isomerase 633424..634215 Stenotrophomonas maltophilia R551-3 6477445 YP_002026930.1 CDS Smal_0542 NC_011071.1 634337 636448 R PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Fibronectin type III domain protein; SMART: chitinase II; KEGG: cvi:CV_4240 probable chitinase; glycoside hydrolase family protein complement(634337..636448) Stenotrophomonas maltophilia R551-3 6477446 YP_002026931.1 CDS Smal_0543 NC_011071.1 637280 641164 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 637280..641164 Stenotrophomonas maltophilia R551-3 6477447 YP_002026932.1 CDS Smal_0544 NC_011071.1 641603 648781 D PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: xac:XAC3546 outer membrane protein; YadA domain-containing protein 641603..648781 Stenotrophomonas maltophilia R551-3 6477448 YP_002026933.1 CDS Smal_0545 NC_011071.1 648940 650793 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: xcv:XCV3669 extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 648940..650793 Stenotrophomonas maltophilia R551-3 6477449 YP_002026934.1 CDS Smal_0546 NC_011071.1 650930 652651 D KEGG: xom:XOO_0771 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; general secretory pathway protein E 650930..652651 Stenotrophomonas maltophilia R551-3 6477450 YP_002026935.1 CDS Smal_0547 NC_011071.1 652676 653896 D PFAM: type II secretion system protein; KEGG: xcb:XC_3572 general secretion pathway protein F; type II secretion system protein 652676..653896 Stenotrophomonas maltophilia R551-3 6477451 YP_002026936.1 CDS Smal_0548 NC_011071.1 653946 654389 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: xcv:XCV3666 type II secretory pathway pseudopilin; general secretion pathway protein G 653946..654389 Stenotrophomonas maltophilia R551-3 6477452 YP_002026937.1 CDS Smal_0549 NC_011071.1 654396 654890 D TIGRFAM: general secretion pathway protein H; KEGG: xac:XAC3541 general secretion pathway protein H; general secretion pathway protein H 654396..654890 Stenotrophomonas maltophilia R551-3 6477453 YP_002026938.1 CDS Smal_0550 NC_011071.1 654887 655306 D KEGG: xcv:XCV3664 type II secretory pathway pseudopilin; type II secretory pathway pseudopilin 654887..655306 Stenotrophomonas maltophilia R551-3 6477454 YP_002026939.1 CDS Smal_0551 NC_011071.1 655303 655935 D KEGG: xcv:XCV3663 general secretion pathway protein J; general secretion pathway protein J 655303..655935 Stenotrophomonas maltophilia R551-3 6477455 YP_002026940.1 CDS Smal_0552 NC_011071.1 655932 656795 D PFAM: General secretion pathway protein K; KEGG: xom:XOO_0777 general secretion pathway protein K; General secretion pathway protein K 655932..656795 Stenotrophomonas maltophilia R551-3 6477456 YP_002026941.1 CDS Smal_0553 NC_011071.1 656792 657931 D PFAM: Fimbrial assembly family protein; KEGG: xcb:XC_3566 general secretion pathway protein L; fimbrial assembly family protein 656792..657931 Stenotrophomonas maltophilia R551-3 6477457 YP_002026942.1 CDS Smal_0554 NC_011071.1 657906 658613 D KEGG: xac:XAC3536 general secretion pathway protein M; general secretion pathway protein M 657906..658613 Stenotrophomonas maltophilia R551-3 6477458 YP_002026943.1 CDS Smal_0555 NC_011071.1 658603 659394 D KEGG: xac:XAC3535 general secretion pathway protein N; general secretion pathway protein N 658603..659394 Stenotrophomonas maltophilia R551-3 6477459 YP_002026944.1 CDS Smal_0556 NC_011071.1 659404 661605 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: xom:XOO_0781 general secretion pathway protein D; general secretion pathway protein D 659404..661605 Stenotrophomonas maltophilia R551-3 6477460 YP_002026945.1 CDS Smal_0557 NC_011071.1 662294 663148 D KEGG: xcb:XC_3562 hypothetical protein; hypothetical protein 662294..663148 Stenotrophomonas maltophilia R551-3 6477461 YP_002026946.1 CDS Smal_0558 NC_011071.1 663145 663984 D PFAM: glycosyl transferase family 2; KEGG: xcb:XC_3557 glycosyl transferase; family 2 glycosyl transferase 663145..663984 Stenotrophomonas maltophilia R551-3 6477462 YP_002026947.1 CDS Smal_0559 NC_011071.1 664093 665274 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 664093..665274 Stenotrophomonas maltophilia R551-3 6477463 YP_002026948.1 CDS Smal_0560 NC_011071.1 665294 665659 R KEGG: pap:PSPA7_5934 hypothetical protein; hypothetical protein complement(665294..665659) Stenotrophomonas maltophilia R551-3 6477464 YP_002026949.1 CDS Smal_0561 NC_011071.1 666100 666639 D PFAM: Fimbrial protein; KEGG: aby:ABAYE1856 putative fimbrial protein precursor (pilin); fimbrial protein 666100..666639 Stenotrophomonas maltophilia R551-3 6477465 YP_002026950.1 CDS Smal_0562 NC_011071.1 666725 667456 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: xfn:XfasM23_0053 pili assembly chaperone, N-terminal; Pili assembly chaperone, N-terminal 666725..667456 Stenotrophomonas maltophilia R551-3 6477466 YP_002026951.1 CDS Smal_0563 NC_011071.1 667528 670113 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xfm:Xfasm12_0063 outer membrane usher protein precursor; fimbrial biogenesis outer membrane usher protein 667528..670113 Stenotrophomonas maltophilia R551-3 6477467 YP_002026952.1 CDS Smal_0564 NC_011071.1 670104 671141 D PFAM: Fimbrial protein; KEGG: xfa:XF0077 fimbrial adhesin precursor; fimbrial protein 670104..671141 Stenotrophomonas maltophilia R551-3 6477468 YP_002026953.1 CDS Smal_0565 NC_011071.1 671409 672593 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mms:mma_2625 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 671409..672593 Stenotrophomonas maltophilia R551-3 6477469 YP_002026954.1 CDS Smal_0566 NC_011071.1 672590 674791 D KEGG: mms:mma_2624 hypothetical protein; hypothetical protein 672590..674791 Stenotrophomonas maltophilia R551-3 6477470 YP_002026955.1 CDS nfrB NC_011071.1 674798 676945 D PFAM: General secretory system II protein E domain protein; KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B; bacteriophage N4 adsorption protein B 674798..676945 Stenotrophomonas maltophilia R551-3 6477471 YP_002026956.1 CDS Smal_0568 NC_011071.1 676942 679764 D KEGG: dac:Daci_2942 TPR repeat-containing protein; hypothetical protein 676942..679764 Stenotrophomonas maltophilia R551-3 6477472 YP_002026957.1 CDS Smal_0569 NC_011071.1 679758 680762 R KEGG: dac:Daci_2934 hypothetical protein; hypothetical protein complement(679758..680762) Stenotrophomonas maltophilia R551-3 6477473 YP_002026958.1 CDS Smal_0570 NC_011071.1 680845 682161 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: xcv:XCV0318 major facilitator superfamily protein; xanthine/uracil/vitamin C permease complement(680845..682161) Stenotrophomonas maltophilia R551-3 6477474 YP_002026959.1 CDS Smal_0571 NC_011071.1 682345 684009 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(682345..684009) Stenotrophomonas maltophilia R551-3 6477475 YP_002026960.1 CDS Smal_0572 NC_011071.1 684265 684738 D KEGG: xcv:XCV0793 hypothetical protein; hypothetical protein 684265..684738 Stenotrophomonas maltophilia R551-3 6477476 YP_002026961.1 CDS glyA NC_011071.1 684926 686179 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 684926..686179 Stenotrophomonas maltophilia R551-3 6477477 YP_002026962.1 CDS Smal_0574 NC_011071.1 686304 686723 D KEGG: xfm:Xfasm12_1911 hypothetical protein; hypothetical protein 686304..686723 Stenotrophomonas maltophilia R551-3 6477519 YP_002026963.1 CDS Smal_0575 NC_011071.1 686751 687200 D KEGG: xfm:Xfasm12_1911 hypothetical protein; hypothetical protein 686751..687200 Stenotrophomonas maltophilia R551-3 6477520 YP_002026964.1 CDS nrdR NC_011071.1 687349 687870 D PFAM: ATP-cone domain protein; KEGG: xom:XOO_3637 hypothetical protein; transcriptional regulator NrdR 687349..687870 Stenotrophomonas maltophilia R551-3 6477521 YP_002026965.1 CDS Smal_0577 NC_011071.1 687950 689035 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: xac:XAC0746 5-amino-6-uracil reductase; riboflavin biosynthesis protein RibD 687950..689035 Stenotrophomonas maltophilia R551-3 6477522 YP_002026966.1 CDS Smal_0578 NC_011071.1 689071 689466 R hypothetical protein complement(689071..689466) Stenotrophomonas maltophilia R551-3 6477523 YP_002026967.1 CDS Smal_0579 NC_011071.1 689601 690485 R KEGG: bur:Bcep18194_A3717 hypothetical protein; hypothetical protein complement(689601..690485) Stenotrophomonas maltophilia R551-3 6477524 YP_002026968.1 CDS Smal_0580 NC_011071.1 690638 691258 R KEGG: xcb:XC_3540 hypothetical protein; hypothetical protein complement(690638..691258) Stenotrophomonas maltophilia R551-3 6477525 YP_002026969.1 CDS Smal_0581 NC_011071.1 691783 692409 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 691783..692409 Stenotrophomonas maltophilia R551-3 6477526 YP_002026970.1 CDS Smal_0582 NC_011071.1 692406 693506 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: xcb:XC_3538 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 692406..693506 Stenotrophomonas maltophilia R551-3 6477527 YP_002026971.1 CDS ribH NC_011071.1 693692 694159 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 693692..694159 Stenotrophomonas maltophilia R551-3 6477528 YP_002026972.1 CDS nusB NC_011071.1 694156 694635 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 694156..694635 Stenotrophomonas maltophilia R551-3 6477529 YP_002026973.1 CDS Smal_0585 NC_011071.1 694756 695718 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 694756..695718 Stenotrophomonas maltophilia R551-3 6477530 YP_002026974.1 CDS Smal_0586 NC_011071.1 695950 696135 R hypothetical protein complement(695950..696135) Stenotrophomonas maltophilia R551-3 6477531 YP_002026975.1 CDS Smal_0587 NC_011071.1 696477 697862 R PFAM: FAD linked oxidase domain protein; KEGG: xac:XAC0762 D-lactate dehydrogenase; FAD linked oxidase domain-containing protein complement(696477..697862) Stenotrophomonas maltophilia R551-3 6477532 YP_002026976.1 CDS Smal_0588 NC_011071.1 697859 698440 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: xcv:XCV0815 hypothetical protein; membrane-bound metal-dependent hydrolase complement(697859..698440) Stenotrophomonas maltophilia R551-3 6477533 YP_002026977.1 CDS Smal_0589 NC_011071.1 698551 698946 R PFAM: protein of unknown function UPF0102; KEGG: xcb:XC_3524 hypothetical protein; hypothetical protein complement(698551..698946) Stenotrophomonas maltophilia R551-3 6477534 YP_002026978.1 CDS Smal_0590 NC_011071.1 698909 700630 R PFAM: LppC family lipoprotein; KEGG: xcb:XC_3523 hypothetical protein; LppC family lipoprotein complement(698909..700630) Stenotrophomonas maltophilia R551-3 6477535 YP_002026979.1 CDS Smal_0591 NC_011071.1 700712 701530 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: xoo:XOO3837 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 700712..701530 Stenotrophomonas maltophilia R551-3 6477536 YP_002026980.1 CDS Smal_0592 NC_011071.1 702130 702609 R KEGG: pol:Bpro_4776 hypothetical protein; hypothetical protein complement(702130..702609) Stenotrophomonas maltophilia R551-3 6477538 YP_002026981.1 CDS Smal_0593 NC_011071.1 702968 703720 R PFAM: protein of unknown function DUF833; KEGG: xcb:XC_3519 hypothetical protein; hypothetical protein complement(702968..703720) Stenotrophomonas maltophilia R551-3 6477539 YP_002026982.1 CDS Smal_0594 NC_011071.1 704044 704490 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 704044..704490 Stenotrophomonas maltophilia R551-3 6477540 YP_002026983.1 CDS mraW NC_011071.1 704505 705473 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: xoo:XOO3833 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 704505..705473 Stenotrophomonas maltophilia R551-3 6477541 YP_002026984.1 CDS Smal_0596 NC_011071.1 705470 705733 D PFAM: cell division protein FtsL; KEGG: xfn:XfasM23_1975 cell division protein FtsL; cell division protein FtsL 705470..705733 Stenotrophomonas maltophilia R551-3 6477542 YP_002026985.1 CDS Smal_0597 NC_011071.1 705730 707574 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: xcv:XCV0825 cell division protein FtsI; peptidoglycan glycosyltransferase 705730..707574 Stenotrophomonas maltophilia R551-3 6477543 YP_002026986.1 CDS murE NC_011071.1 707571 709079 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 707571..709079 Stenotrophomonas maltophilia R551-3 6477544 YP_002026987.1 CDS Smal_0599 NC_011071.1 709076 710470 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: xcc:XCC0722 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 709076..710470 Stenotrophomonas maltophilia R551-3 6477545 YP_002026988.1 CDS mraY NC_011071.1 710460 711545 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 710460..711545 Stenotrophomonas maltophilia R551-3 6477546 YP_002026989.1 CDS Smal_0601 NC_011071.1 711547 712872 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: xcb:XC_3511 cell division protein; cell division protein FtsW 711547..712872 Stenotrophomonas maltophilia R551-3 6477547 YP_002026990.1 CDS murG NC_011071.1 712869 713957 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 712869..713957 Stenotrophomonas maltophilia R551-3 6477548 YP_002026991.1 CDS murC NC_011071.1 713998 715434 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 713998..715434 Stenotrophomonas maltophilia R551-3 6477549 YP_002026992.1 CDS ddl NC_011071.1 715431 716393 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 715431..716393 Stenotrophomonas maltophilia R551-3 6477550 YP_002026993.1 CDS Smal_0605 NC_011071.1 716390 717139 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: xcb:XC_3507 cell division protein; Polypeptide-transport-associated domain-containing protein FtsQ-type 716390..717139 Stenotrophomonas maltophilia R551-3 6477551 YP_002026994.1 CDS Smal_0606 NC_011071.1 717136 718371 D PFAM: cell division protein FtsA; KEGG: xac:XAC0783 cell division protein; cell division protein FtsA 717136..718371 Stenotrophomonas maltophilia R551-3 6477552 YP_002026995.1 CDS Smal_0607 NC_011071.1 718542 719777 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 718542..719777 Stenotrophomonas maltophilia R551-3 6477553 YP_002026996.1 CDS lpxC NC_011071.1 719971 720882 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 719971..720882 Stenotrophomonas maltophilia R551-3 6477554 YP_002026997.1 CDS Smal_0609 NC_011071.1 721165 721614 R KEGG: xcv:XCV0837 hypothetical protein; hypothetical protein complement(721165..721614) Stenotrophomonas maltophilia R551-3 6477555 YP_002026998.1 CDS Smal_0610 NC_011071.1 721627 722583 D PFAM: Peptidase M23; KEGG: xcb:XC_3502 peptidase; peptidase M23 721627..722583 Stenotrophomonas maltophilia R551-3 6477556 YP_002026999.1 CDS Smal_0611 NC_011071.1 722882 725614 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 722882..725614 Stenotrophomonas maltophilia R551-3 6477557 YP_002027000.1 CDS Smal_0612 NC_011071.1 725727 726683 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: xom:XOO_3593 hypothetical protein; hypothetical protein 725727..726683 Stenotrophomonas maltophilia R551-3 6477558 YP_002027001.1 CDS Smal_0613 NC_011071.1 726778 727359 R KEGG: xac:XAC0790 hypothetical protein; hypothetical protein complement(726778..727359) Stenotrophomonas maltophilia R551-3 6477559 YP_002027002.1 CDS Smal_0614 NC_011071.1 727400 728227 R KEGG: xac:XAC0791 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(727400..728227) Stenotrophomonas maltophilia R551-3 6477560 YP_002027003.1 CDS Smal_0615 NC_011071.1 728432 729358 D PFAM: alpha/beta hydrolase fold; KEGG: ppg:PputGB1_3185 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 728432..729358 Stenotrophomonas maltophilia R551-3 6477561 YP_002027004.1 CDS Smal_0616 NC_011071.1 729395 730444 D PFAM: histidine kinase internal region; KEGG: sru:SRU_0415 putative transmembrane sensor histidine kinase transcription regulator protein; signal transduction histidine kinase LytS 729395..730444 Stenotrophomonas maltophilia R551-3 6477562 YP_002027005.1 CDS Smal_0617 NC_011071.1 730441 731172 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_0416 two-component system, regulatory protein; LytTR family two component transcriptional regulator 730441..731172 Stenotrophomonas maltophilia R551-3 6477563 YP_002027006.1 CDS Smal_0618 NC_011071.1 731179 732669 R PFAM: amidohydrolase; KEGG: sus:Acid_3398 amidohydrolase; amidohydrolase complement(731179..732669) Stenotrophomonas maltophilia R551-3 6477564 YP_002027007.1 CDS Smal_0619 NC_011071.1 732657 733949 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sse:Ssed_2720 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(732657..733949) Stenotrophomonas maltophilia R551-3 6477565 YP_002027008.1 CDS Smal_0620 NC_011071.1 733946 734635 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sse:Ssed_2721 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(733946..734635) Stenotrophomonas maltophilia R551-3 6477566 YP_002027009.1 CDS Smal_0621 NC_011071.1 734638 735768 R PFAM: ThiJ/PfpI domain protein; KEGG: sse:Ssed_2722 putative intracellular protease/amidase-like protein; ThiJ/PfpI domain-containing protein complement(734638..735768) Stenotrophomonas maltophilia R551-3 6477567 YP_002027010.1 CDS Smal_0622 NC_011071.1 735874 736431 D KEGG: xcb:XC_3484 hypothetical protein; hypothetical protein 735874..736431 Stenotrophomonas maltophilia R551-3 6477568 YP_002027011.1 CDS Smal_0623 NC_011071.1 736541 737176 D TIGRFAM: TonB family protein; KEGG: cya:CYA_2030 TonB family protein; TonB family protein 736541..737176 Stenotrophomonas maltophilia R551-3 6477569 YP_002027012.1 CDS Smal_0624 NC_011071.1 737247 737732 R KEGG: cms:CMS_1721 hypothetical protein; hypothetical protein complement(737247..737732) Stenotrophomonas maltophilia R551-3 6477570 YP_002027013.1 CDS Smal_0625 NC_011071.1 737732 738205 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: psa:PST_2848 YbaK/EbsC protein; ybaK/ebsC protein complement(737732..738205) Stenotrophomonas maltophilia R551-3 6477571 YP_002027014.1 CDS Smal_0626 NC_011071.1 738455 739900 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(738455..739900) Stenotrophomonas maltophilia R551-3 6477572 YP_002027015.1 CDS Smal_0627 NC_011071.1 740140 742662 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xac:XAC0805 hypothetical protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 740140..742662 Stenotrophomonas maltophilia R551-3 6477573 YP_002027016.1 CDS Smal_0628 NC_011071.1 742835 745546 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 742835..745546 Stenotrophomonas maltophilia R551-3 6477574 YP_002027017.1 CDS Smal_0629 NC_011071.1 745663 746169 R PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_2844 thioesterase superfamily protein; thioesterase superfamily protein complement(745663..746169) Stenotrophomonas maltophilia R551-3 6477575 YP_002027018.1 CDS Smal_0630 NC_011071.1 746353 747564 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(746353..747564) Stenotrophomonas maltophilia R551-3 6477576 YP_002027019.1 CDS Smal_0631 NC_011071.1 747898 749613 D PFAM: phospholipid/glycerol acyltransferase; KEGG: aha:AHA_1611 phosphate acyltransferase family protein; phospholipid/glycerol acyltransferase 747898..749613 Stenotrophomonas maltophilia R551-3 6477577 YP_002027020.1 CDS Smal_0632 NC_011071.1 749610 750410 D PFAM: metallophosphoesterase; KEGG: ccr:CC_3344 hypothetical protein; metallophosphoesterase 749610..750410 Stenotrophomonas maltophilia R551-3 6477578 YP_002027021.1 CDS Smal_0633 NC_011071.1 750622 751677 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: xcv:XCV0866 hypothetical protein; membrane-bound metal-dependent hydrolase 750622..751677 Stenotrophomonas maltophilia R551-3 6477579 YP_002027022.1 CDS Smal_0634 NC_011071.1 751736 752734 R PFAM: glycosyl transferase family 2; KEGG: pfl:PFL_5488 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(751736..752734) Stenotrophomonas maltophilia R551-3 6477580 YP_002027023.1 CDS Smal_0635 NC_011071.1 752743 754635 R KEGG: efa:EF2179 hypothetical protein; hypothetical protein complement(752743..754635) Stenotrophomonas maltophilia R551-3 6477581 YP_002027024.1 CDS Smal_0636 NC_011071.1 754906 755733 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC0815 methyltransferase; type 11 methyltransferase complement(754906..755733) Stenotrophomonas maltophilia R551-3 6477582 YP_002027025.1 CDS Smal_0637 NC_011071.1 755848 756843 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: xac:XAC0816 hypothetical protein; nifR3 family TIM-barrel protein complement(755848..756843) Stenotrophomonas maltophilia R551-3 6477583 YP_002027026.1 CDS Smal_0638 NC_011071.1 757002 757433 R KEGG: swd:Swoo_1427 hypothetical protein; hypothetical protein complement(757002..757433) Stenotrophomonas maltophilia R551-3 6477584 YP_002027027.1 CDS Smal_0639 NC_011071.1 757515 758432 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_1493 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(757515..758432) Stenotrophomonas maltophilia R551-3 6477585 YP_002027028.1 CDS Smal_0640 NC_011071.1 758528 759715 D PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3762 general substrate transporter:major facilitator superfamily; major facilitator superfamily protein 758528..759715 Stenotrophomonas maltophilia R551-3 6477586 YP_002027029.1 CDS Smal_0641 NC_011071.1 759769 760734 R PFAM: PfkB domain protein; KEGG: xcv:XCV0870 ribokinase; Ribokinase complement(759769..760734) Stenotrophomonas maltophilia R551-3 6477587 YP_002027030.1 CDS Smal_0642 NC_011071.1 760760 762058 R PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: xcb:XC_3467 nucleoside transporter; Na+ dependent nucleoside transporter domain-containing protein complement(760760..762058) Stenotrophomonas maltophilia R551-3 6477588 YP_002027031.1 CDS Smal_0643 NC_011071.1 762253 763224 D PFAM: aldo/keto reductase; KEGG: xcc:XCC0766 voltage-gated potassium channel beta subunit; aldo/keto reductase 762253..763224 Stenotrophomonas maltophilia R551-3 6477589 YP_002027032.1 CDS Smal_0644 NC_011071.1 763465 763665 D KEGG: xom:XOO_3562 hypothetical protein; hypothetical protein 763465..763665 Stenotrophomonas maltophilia R551-3 6477590 YP_002027033.1 CDS Smal_0645 NC_011071.1 763810 766062 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_3463 outer membrane hemin receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 763810..766062 Stenotrophomonas maltophilia R551-3 6477591 YP_002027034.1 CDS Smal_0646 NC_011071.1 766067 766666 D KEGG: xac:XAC0824 hypothetical protein; hypothetical protein 766067..766666 Stenotrophomonas maltophilia R551-3 6477674 YP_002027035.1 CDS Smal_0647 NC_011071.1 766740 767666 D KEGG: xcb:XC_3461 hypothetical protein; hypothetical protein 766740..767666 Stenotrophomonas maltophilia R551-3 6477675 YP_002027036.1 CDS Smal_0648 NC_011071.1 767817 768308 R hypothetical protein complement(767817..768308) Stenotrophomonas maltophilia R551-3 6477676 YP_002027037.1 CDS Smal_0649 NC_011071.1 768411 770927 R PFAM: protein of unknown function DUF214; KEGG: xac:XAC0831 oxidoreductase; hypothetical protein complement(768411..770927) Stenotrophomonas maltophilia R551-3 6477677 YP_002027038.1 CDS Smal_0650 NC_011071.1 770924 771571 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xom:XOO_3554 ABC transporter ATP-binding protein; ABC transporter-like protein complement(770924..771571) Stenotrophomonas maltophilia R551-3 6477678 YP_002027039.1 CDS Smal_0651 NC_011071.1 771647 772291 D PFAM: lipolytic protein G-D-S-L family; KEGG: xcv:XCV0886 acyl-CoA thioesterase I; lysophospholipase 771647..772291 Stenotrophomonas maltophilia R551-3 6477679 YP_002027040.1 CDS Smal_0652 NC_011071.1 772379 773092 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xom:XOO_3552 two-component system regulatory protein; winged helix family two component transcriptional regulator 772379..773092 Stenotrophomonas maltophilia R551-3 6477680 YP_002027041.1 CDS Smal_0653 NC_011071.1 773249 774520 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3451 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 773249..774520 Stenotrophomonas maltophilia R551-3 6477681 YP_002027042.1 CDS Smal_0654 NC_011071.1 774680 775381 R PFAM: lipolytic protein G-D-S-L family; KEGG: xac:XAC0836 hypothetical protein; G-D-S-L family lipolytic protein complement(774680..775381) Stenotrophomonas maltophilia R551-3 6477682 YP_002027043.1 CDS Smal_0655 NC_011071.1 775594 775989 D PFAM: diacylglycerol kinase; KEGG: xfa:XF2334 diacylglycerol kinase; diacylglycerol kinase 775594..775989 Stenotrophomonas maltophilia R551-3 6477683 YP_002027044.1 CDS Smal_0656 NC_011071.1 776022 776771 D PFAM: Integral membrane protein TerC; KEGG: apj:APJL_1129 hypothetical protein; integral membrane protein TerC 776022..776771 Stenotrophomonas maltophilia R551-3 6477684 YP_002027045.1 CDS Smal_0657 NC_011071.1 777036 778196 D PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1695 MFS transporter, DHA1 family; major facilitator superfamily protein 777036..778196 Stenotrophomonas maltophilia R551-3 6477685 YP_002027046.1 CDS Smal_0658 NC_011071.1 778745 779365 D PFAM: LemA family protein; KEGG: xcv:XCV0891 hypothetical protein; LemA family protein 778745..779365 Stenotrophomonas maltophilia R551-3 6477686 YP_002027047.1 CDS Smal_0659 NC_011071.1 779369 780256 D PFAM: protein of unknown function DUF477; KEGG: xac:XAC0839 glycine rich protein; hypothetical protein 779369..780256 Stenotrophomonas maltophilia R551-3 6477687 YP_002027048.1 CDS Smal_0660 NC_011071.1 780256 780750 D PFAM: protein of unknown function DUF477; KEGG: xcb:XC_3446 hypothetical protein; hypothetical protein 780256..780750 Stenotrophomonas maltophilia R551-3 6477688 YP_002027049.1 CDS Smal_0661 NC_011071.1 780802 781689 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 780802..781689 Stenotrophomonas maltophilia R551-3 6477689 YP_002027050.1 CDS thyA NC_011071.1 781686 782480 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 781686..782480 Stenotrophomonas maltophilia R551-3 6477690 YP_002027051.1 CDS Smal_0663 NC_011071.1 782489 783040 D hypothetical protein 782489..783040 Stenotrophomonas maltophilia R551-3 6477691 YP_002027052.1 CDS Smal_0664 NC_011071.1 783054 783545 D PFAM: dihydrofolate reductase region; KEGG: xcb:XC_3443 dihydrofolate reductase type III; Dihydrofolate reductase 783054..783545 Stenotrophomonas maltophilia R551-3 6477692 YP_002027053.1 CDS Smal_0665 NC_011071.1 783635 784282 R PFAM: protein of unknown function DUF1287; KEGG: pmy:Pmen_2518 protein of unknown function DUF1287; hypothetical protein complement(783635..784282) Stenotrophomonas maltophilia R551-3 6477693 YP_002027054.1 CDS apaH NC_011071.1 784279 785313 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(784279..785313) Stenotrophomonas maltophilia R551-3 6477694 YP_002027055.1 CDS apaG NC_011071.1 785329 785736 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(785329..785736) Stenotrophomonas maltophilia R551-3 6477695 YP_002027056.1 CDS ksgA NC_011071.1 785726 786529 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(785726..786529) Stenotrophomonas maltophilia R551-3 6477696 YP_002027057.1 CDS pdxA NC_011071.1 786526 787506 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(786526..787506) Stenotrophomonas maltophilia R551-3 6477697 YP_002027058.1 CDS Smal_0670 NC_011071.1 787510 788853 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: xac:XAC0865 peptidyl-prolyl cis-trans isomerase; SurA domain complement(787510..788853) Stenotrophomonas maltophilia R551-3 6477698 YP_002027059.1 CDS Smal_0671 NC_011071.1 788850 791330 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(788850..791330) Stenotrophomonas maltophilia R551-3 6477699 YP_002027060.1 CDS Smal_0672 NC_011071.1 791420 792358 R PFAM: histone deacetylase superfamily; KEGG: xom:XOO_3534 acetoin utilization family protein; histone deacetylase superfamily protein complement(791420..792358) Stenotrophomonas maltophilia R551-3 6477700 YP_002027061.1 CDS Smal_0673 NC_011071.1 792368 792922 R TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: xcc:XCC0796 hypothetical protein; ATP/cobalamin adenosyltransferase complement(792368..792922) Stenotrophomonas maltophilia R551-3 6477701 YP_002027062.1 CDS Smal_0674 NC_011071.1 792931 793515 R KEGG: xcv:XCV0906 hypothetical protein; hypothetical protein complement(792931..793515) Stenotrophomonas maltophilia R551-3 6477702 YP_002027063.1 CDS Smal_0675 NC_011071.1 793623 794831 D Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 793623..794831 Stenotrophomonas maltophilia R551-3 6477703 YP_002027064.1 CDS Smal_0676 NC_011071.1 794828 796009 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 794828..796009 Stenotrophomonas maltophilia R551-3 6477704 YP_002027065.1 CDS Smal_0677 NC_011071.1 796078 796473 R KEGG: xcv:XCV0920 hypothetical protein; hypothetical protein complement(796078..796473) Stenotrophomonas maltophilia R551-3 6477705 YP_002027066.1 CDS Smal_0678 NC_011071.1 796523 797590 R KEGG: xcb:XC_3414 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(796523..797590) Stenotrophomonas maltophilia R551-3 6477706 YP_002027067.1 CDS Smal_0679 NC_011071.1 797574 798134 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcb:XC_3413 hypothetical protein; zinc-binding CMP/dCMP deaminase complement(797574..798134) Stenotrophomonas maltophilia R551-3 6477707 YP_002027068.1 CDS Smal_0680 NC_011071.1 798232 798954 R hypothetical protein complement(798232..798954) Stenotrophomonas maltophilia R551-3 6477708 YP_002027069.1 CDS Smal_0681 NC_011071.1 799003 799656 R KEGG: cbe:Cbei_2916 NHL repeat containing protein; hypothetical protein complement(799003..799656) Stenotrophomonas maltophilia R551-3 6477709 YP_002027070.1 CDS Smal_0682 NC_011071.1 799700 801448 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(799700..801448) Stenotrophomonas maltophilia R551-3 6477710 YP_002027071.1 CDS Smal_0683 NC_011071.1 801630 801893 D KEGG: xac:XAC0895 hypothetical protein; hypothetical protein 801630..801893 Stenotrophomonas maltophilia R551-3 6477711 YP_002027072.1 CDS Smal_0684 NC_011071.1 801903 802589 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 801903..802589 Stenotrophomonas maltophilia R551-3 6477712 YP_002027073.1 CDS Smal_0685 NC_011071.1 803259 804215 R PFAM: Transaldolase; KEGG: xcb:XC_3400 transaldolase B; transaldolase B complement(803259..804215) Stenotrophomonas maltophilia R551-3 6477713 YP_002027074.1 CDS Smal_0686 NC_011071.1 804266 804670 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: xcc:XCC0831 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor complement(804266..804670) Stenotrophomonas maltophilia R551-3 6477714 YP_002027075.1 CDS Smal_0687 NC_011071.1 804794 805756 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV0941 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(804794..805756) Stenotrophomonas maltophilia R551-3 6477715 YP_002027076.1 CDS Smal_0688 NC_011071.1 805842 807434 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcv:XCV0942 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F complement(805842..807434) Stenotrophomonas maltophilia R551-3 6477716 YP_002027077.1 CDS Smal_0689 NC_011071.1 807661 808224 R TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pmy:Pmen_1323 peroxiredoxin; peroxiredoxin complement(807661..808224) Stenotrophomonas maltophilia R551-3 6477717 YP_002027078.1 CDS Smal_0690 NC_011071.1 808575 809432 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: xom:XOO_3446 protoporphyrinogen oxidase; protein-(glutamine-N5) methyltransferase 808575..809432 Stenotrophomonas maltophilia R551-3 6477718 YP_002027079.1 CDS Smal_0691 NC_011071.1 809481 810422 D KEGG: xac:XAC0909 proline imino-peptidase, chain A; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 809481..810422 Stenotrophomonas maltophilia R551-3 6477719 YP_002027080.1 CDS Smal_0692 NC_011071.1 810590 811501 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5204 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(810590..811501) Stenotrophomonas maltophilia R551-3 6477720 YP_002027081.1 CDS Smal_0693 NC_011071.1 811580 812998 D PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4316 major facilitator superfamily MFS_1; major facilitator superfamily protein 811580..812998 Stenotrophomonas maltophilia R551-3 6477721 YP_002027082.1 CDS Smal_0694 NC_011071.1 812995 813666 D KEGG: sdn:Sden_0162 50S ribosomal protein L7/L12; hypothetical protein 812995..813666 Stenotrophomonas maltophilia R551-3 6477722 YP_002027083.1 CDS Smal_0695 NC_011071.1 813981 814778 R PFAM: N-formylglutamate amidohydrolase; KEGG: xom:XOO_3440 hypothetical protein; N-formylglutamate amidohydrolase complement(813981..814778) Stenotrophomonas maltophilia R551-3 6477723 YP_002027084.1 CDS Smal_0696 NC_011071.1 814771 815325 R PFAM: NUDIX hydrolase; KEGG: xcb:XC_3392 MutT-like protein; NUDIX hydrolase complement(814771..815325) Stenotrophomonas maltophilia R551-3 6477724 YP_002027085.1 CDS Smal_0697 NC_011071.1 815322 816272 R PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: xcb:XC_3391 exodeoxyribonuclease IX; 5'-3' exonuclease complement(815322..816272) Stenotrophomonas maltophilia R551-3 6477725 YP_002027086.1 CDS Smal_0698 NC_011071.1 816269 816850 R PFAM: nitroreductase; KEGG: xcb:XC_3390 hypothetical protein; nitroreductase complement(816269..816850) Stenotrophomonas maltophilia R551-3 6477726 YP_002027087.1 CDS Smal_0699 NC_011071.1 817182 819503 D PFAM: protein of unknown function DUF1631; KEGG: xcb:XC_3388 hypothetical protein; hypothetical protein 817182..819503 Stenotrophomonas maltophilia R551-3 6477727 YP_002027088.1 CDS Smal_0700 NC_011071.1 819556 820635 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: xcv:XCV0951 putative NAD(P) transhydrogenase; alanine dehydrogenase/PNT domain-containing protein 819556..820635 Stenotrophomonas maltophilia R551-3 6477728 YP_002027089.1 CDS Smal_0701 NC_011071.1 820713 821174 R KEGG: xcv:XCV0952 putative secreted protein; hypothetical protein complement(820713..821174) Stenotrophomonas maltophilia R551-3 6477729 YP_002027090.1 CDS Smal_0702 NC_011071.1 821179 821505 R KEGG: xcv:XCV0953 hypothetical protein; hypothetical protein complement(821179..821505) Stenotrophomonas maltophilia R551-3 6477730 YP_002027091.1 CDS Smal_0703 NC_011071.1 821502 822086 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(821502..822086) Stenotrophomonas maltophilia R551-3 6477731 YP_002027092.1 CDS Smal_0704 NC_011071.1 822185 822505 D KEGG: xom:XOO_3431 pyridine nucleotide transhydrogenase subunit alpha; pyridine nucleotide transhydrogenase subunit alpha 822185..822505 Stenotrophomonas maltophilia R551-3 6477732 YP_002027093.1 CDS Smal_0705 NC_011071.1 822502 823962 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: xcv:XCV0955 putative NAD(P) transhydrogenase beta subunit; NAD(P)(+) transhydrogenase 822502..823962 Stenotrophomonas maltophilia R551-3 6477733 YP_002027094.1 CDS Smal_0706 NC_011071.1 824062 824481 R KEGG: xac:XAC0925 hypothetical protein; hypothetical protein complement(824062..824481) Stenotrophomonas maltophilia R551-3 6477734 YP_002027095.1 CDS Smal_0707 NC_011071.1 824604 825155 D TIGRFAM: FeS assembly SUF system protein SufT; PFAM: protein of unknown function DUF59; KEGG: xom:XOO_3426 hypothetical protein; FeS assembly SUF system protein SufT 824604..825155 Stenotrophomonas maltophilia R551-3 6477735 YP_002027096.1 CDS Smal_0708 NC_011071.1 825215 826309 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 825215..826309 Stenotrophomonas maltophilia R551-3 6477736 YP_002027097.1 CDS Smal_0709 NC_011071.1 826484 827140 D hypothetical protein 826484..827140 Stenotrophomonas maltophilia R551-3 6477737 YP_002027098.1 CDS Smal_0710 NC_011071.1 827137 827472 D PFAM: regulatory protein ArsR; transcriptional regulator PadR family protein; KEGG: sru:SRU_1015 predicted transcription regulator, ArsR family; ArsR family transcriptional regulator 827137..827472 Stenotrophomonas maltophilia R551-3 6477738 YP_002027099.1 CDS Smal_0711 NC_011071.1 827474 828496 D PFAM: Peptidase M23; KEGG: sah:SaurJH1_2272 peptidase M23B; peptidase M23 827474..828496 Stenotrophomonas maltophilia R551-3 6477739 YP_002027100.1 CDS Smal_0712 NC_011071.1 828864 830603 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; peptidase domain protein; KEGG: xcb:XC_3379 extracellular protease; peptidase S8/S53 subtilisin kexin sedolisin 828864..830603 Stenotrophomonas maltophilia R551-3 6477740 YP_002027101.1 CDS Smal_0713 NC_011071.1 830692 831186 R KEGG: xcv:XCV0963 asparaginase; asparaginase complement(830692..831186) Stenotrophomonas maltophilia R551-3 6477741 YP_002027102.1 CDS Smal_0714 NC_011071.1 831257 831592 R KEGG: xcb:XC_3372 hypothetical protein; hypothetical protein complement(831257..831592) Stenotrophomonas maltophilia R551-3 6477742 YP_002027103.1 CDS Smal_0715 NC_011071.1 831589 832182 R TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: xom:XOO_3418 tryptophan repressor binding protein; flavoprotein WrbA complement(831589..832182) Stenotrophomonas maltophilia R551-3 6477743 YP_002027104.1 CDS rbn NC_011071.1 832260 833534 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function; ribonuclease BN/unknown domain fusion protein 832260..833534 Stenotrophomonas maltophilia R551-3 6477744 YP_002027105.1 CDS Smal_0717 NC_011071.1 833531 834106 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_3369 thioredoxin; alkyl hydroperoxide reductase 833531..834106 Stenotrophomonas maltophilia R551-3 6477745 YP_002027106.1 CDS Smal_0718 NC_011071.1 834627 835409 R PFAM: protein of unknown function DUF344; KEGG: xcb:XC_3366 transcriptional regulator; hypothetical protein complement(834627..835409) Stenotrophomonas maltophilia R551-3 6477746 YP_002027107.1 CDS Smal_0719 NC_011071.1 835637 836581 D PFAM: Integrase catalytic region; KEGG: bpe:BP3519 transposase; integrase catalytic subunit 835637..836581 Stenotrophomonas maltophilia R551-3 6477747 YP_002027108.1 CDS Smal_0720 NC_011071.1 836591 838303 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0943 hypothetical protein; hypothetical protein complement(836591..838303) Stenotrophomonas maltophilia R551-3 6477748 YP_002027109.1 CDS prfA NC_011071.1 838309 839391 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(838309..839391) Stenotrophomonas maltophilia R551-3 6477749 YP_002027110.1 CDS hemA NC_011071.1 839369 840652 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(839369..840652) Stenotrophomonas maltophilia R551-3 6477750 YP_002027111.1 CDS Smal_0723 NC_011071.1 840707 842401 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC0946 hypothetical protein; hypothetical protein 840707..842401 Stenotrophomonas maltophilia R551-3 6477751 YP_002027112.1 CDS lolB NC_011071.1 842398 843057 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 842398..843057 Stenotrophomonas maltophilia R551-3 6477752 YP_002027113.1 CDS ipk NC_011071.1 843054 843923 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 843054..843923 Stenotrophomonas maltophilia R551-3 6477753 YP_002027114.1 CDS Smal_0726 NC_011071.1 844150 845109 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 844150..845109 Stenotrophomonas maltophilia R551-3 6477755 YP_002027115.1 CDS Smal_0727 NC_011071.1 845216 845836 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 845216..845836 Stenotrophomonas maltophilia R551-3 6477826 YP_002027116.1 CDS Smal_0728 NC_011071.1 845896 846474 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 845896..846474 Stenotrophomonas maltophilia R551-3 6477827 YP_002027117.1 CDS Smal_0729 NC_011071.1 846580 847671 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 846580..847671 Stenotrophomonas maltophilia R551-3 6477828 YP_002027118.1 CDS Smal_0730 NC_011071.1 848161 848343 R hypothetical protein complement(848161..848343) Stenotrophomonas maltophilia R551-3 6477829 YP_002027119.1 CDS Smal_0731 NC_011071.1 848531 848932 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_5877 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 848531..848932 Stenotrophomonas maltophilia R551-3 6477830 YP_002027120.1 CDS Smal_0732 NC_011071.1 848992 849519 R hypothetical protein complement(848992..849519) Stenotrophomonas maltophilia R551-3 6477831 YP_002027121.1 CDS Smal_0733 NC_011071.1 849629 849856 R hypothetical protein complement(849629..849856) Stenotrophomonas maltophilia R551-3 6477832 YP_002027122.1 CDS Smal_0734 NC_011071.1 850026 853286 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: pfl:PFL_4376 outer membrane autotransporter; outer membrane autotransporter barrel domain-containing protein complement(850026..853286) Stenotrophomonas maltophilia R551-3 6477833 YP_002027123.1 CDS Smal_0735 NC_011071.1 853550 854191 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_3018 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(853550..854191) Stenotrophomonas maltophilia R551-3 6477834 YP_002027124.1 CDS Smal_0736 NC_011071.1 854188 857412 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pap:PSPA7_3017 RcsC; Hpt sensor hybrid histidine kinase complement(854188..857412) Stenotrophomonas maltophilia R551-3 6477835 YP_002027125.1 CDS Smal_0737 NC_011071.1 857538 858758 R PFAM: EAL domain protein; response regulator receiver; KEGG: pfo:PflO1_3039 putative diguanylate phosphodiesterase (EAL domain) with response regulator receiver modulation; response regulator receiver modulated diguanylate phosphodiesterase complement(857538..858758) Stenotrophomonas maltophilia R551-3 6477836 YP_002027126.1 CDS Smal_0738 NC_011071.1 858755 861532 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pap:PSPA7_3015 kinase sensor protein; integral membrane sensor hybrid histidine kinase complement(858755..861532) Stenotrophomonas maltophilia R551-3 6477837 YP_002027127.1 CDS Smal_0739 NC_011071.1 861694 864432 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC2193 TonB-dependent receptor; TonB-dependent receptor complement(861694..864432) Stenotrophomonas maltophilia R551-3 6477838 YP_002027128.1 CDS Smal_0740 NC_011071.1 864603 865622 D PFAM: peptidase S51 dipeptidase E; KEGG: cak:Caul_1121 peptidase S51 dipeptidase E; peptidase S51 dipeptidase E 864603..865622 Stenotrophomonas maltophilia R551-3 6477839 YP_002027129.1 CDS Smal_0741 NC_011071.1 865727 866743 D PFAM: peptidase T2 asparaginase 2; KEGG: xcv:XCV0254 asparaginase precursor; peptidase T2 asparaginase 2 865727..866743 Stenotrophomonas maltophilia R551-3 6477840 YP_002027130.1 CDS Smal_0742 NC_011071.1 867230 868420 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 867230..868420 Stenotrophomonas maltophilia R551-3 6477844 YP_002027131.1 CDS secE NC_011071.1 868649 869062 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 868649..869062 Stenotrophomonas maltophilia R551-3 6477846 YP_002027132.1 CDS nusG NC_011071.1 869073 869633 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 869073..869633 Stenotrophomonas maltophilia R551-3 6477847 YP_002027133.1 CDS rplK NC_011071.1 869931 870359 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 869931..870359 Stenotrophomonas maltophilia R551-3 6477848 YP_002027134.1 CDS rplA NC_011071.1 870364 871062 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 870364..871062 Stenotrophomonas maltophilia R551-3 6477849 YP_002027135.1 CDS rplJ NC_011071.1 871446 871982 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 871446..871982 Stenotrophomonas maltophilia R551-3 6477850 YP_002027136.1 CDS rplL NC_011071.1 872046 872414 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 872046..872414 Stenotrophomonas maltophilia R551-3 6477851 YP_002027137.1 CDS rpoB NC_011071.1 872779 876933 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 872779..876933 Stenotrophomonas maltophilia R551-3 6477852 YP_002027138.1 CDS Smal_0750 NC_011071.1 877021 881244 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 877021..881244 Stenotrophomonas maltophilia R551-3 6477853 YP_002027139.1 CDS rpsL NC_011071.1 881528 881902 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 881528..881902 Stenotrophomonas maltophilia R551-3 6477854 YP_002027140.1 CDS Smal_0752 NC_011071.1 881915 882388 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 881915..882388 Stenotrophomonas maltophilia R551-3 6477855 YP_002027141.1 CDS Smal_0753 NC_011071.1 882527 884668 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 882527..884668 Stenotrophomonas maltophilia R551-3 6477856 YP_002027142.1 CDS Smal_0754 NC_011071.1 884720 885910 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 884720..885910 Stenotrophomonas maltophilia R551-3 6477857 YP_002027143.1 CDS rpsJ NC_011071.1 886244 886555 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 886244..886555 Stenotrophomonas maltophilia R551-3 6477858 YP_002027144.1 CDS rplC NC_011071.1 886567 887217 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 886567..887217 Stenotrophomonas maltophilia R551-3 6477859 YP_002027145.1 CDS rplD NC_011071.1 887230 887835 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 887230..887835 Stenotrophomonas maltophilia R551-3 6477860 YP_002027146.1 CDS rplW NC_011071.1 887832 888131 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 887832..888131 Stenotrophomonas maltophilia R551-3 6477861 YP_002027147.1 CDS rplB NC_011071.1 888142 888969 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 888142..888969 Stenotrophomonas maltophilia R551-3 6477862 YP_002027148.1 CDS rpsS NC_011071.1 888976 889245 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 888976..889245 Stenotrophomonas maltophilia R551-3 6477863 YP_002027149.1 CDS rplV NC_011071.1 889258 889593 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 889258..889593 Stenotrophomonas maltophilia R551-3 6477864 YP_002027150.1 CDS rpsC NC_011071.1 889612 890346 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 889612..890346 Stenotrophomonas maltophilia R551-3 6477865 YP_002027151.1 CDS rplP NC_011071.1 890352 890765 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 890352..890765 Stenotrophomonas maltophilia R551-3 6477866 YP_002027152.1 CDS Smal_0764 NC_011071.1 890765 890950 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 890765..890950 Stenotrophomonas maltophilia R551-3 6477867 YP_002027153.1 CDS rpsQ NC_011071.1 890962 891231 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 890962..891231 Stenotrophomonas maltophilia R551-3 6477868 YP_002027154.1 CDS rplN NC_011071.1 891244 891612 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 891244..891612 Stenotrophomonas maltophilia R551-3 6477869 YP_002027155.1 CDS rplX NC_011071.1 891629 891946 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 891629..891946 Stenotrophomonas maltophilia R551-3 6477870 YP_002027156.1 CDS rplE NC_011071.1 891958 892500 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 891958..892500 Stenotrophomonas maltophilia R551-3 6477871 YP_002027157.1 CDS rpsN NC_011071.1 892519 892824 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 892519..892824 Stenotrophomonas maltophilia R551-3 6477872 YP_002027158.1 CDS rpsH NC_011071.1 893084 893482 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 893084..893482 Stenotrophomonas maltophilia R551-3 6477873 YP_002027159.1 CDS rplF NC_011071.1 893501 894025 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 893501..894025 Stenotrophomonas maltophilia R551-3 6477874 YP_002027160.1 CDS rplR NC_011071.1 894112 894465 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 894112..894465 Stenotrophomonas maltophilia R551-3 6477875 YP_002027161.1 CDS rpsE NC_011071.1 894627 895169 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 894627..895169 Stenotrophomonas maltophilia R551-3 6477876 YP_002027162.1 CDS rpmD NC_011071.1 895162 895353 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 895162..895353 Stenotrophomonas maltophilia R551-3 6477877 YP_002027163.1 CDS rplO NC_011071.1 895360 895803 D late assembly protein; 50S ribosomal protein L15 895360..895803 Stenotrophomonas maltophilia R551-3 6477878 YP_002027164.1 CDS secY NC_011071.1 895811 897178 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 895811..897178 Stenotrophomonas maltophilia R551-3 6477879 YP_002027165.1 CDS rpsM NC_011071.1 897526 897882 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 897526..897882 Stenotrophomonas maltophilia R551-3 6477880 YP_002027166.1 CDS Smal_0778 NC_011071.1 897894 898283 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 897894..898283 Stenotrophomonas maltophilia R551-3 6477881 YP_002027167.1 CDS rpsD NC_011071.1 898299 898928 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 898299..898928 Stenotrophomonas maltophilia R551-3 6477882 YP_002027168.1 CDS Smal_0780 NC_011071.1 898984 899982 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 898984..899982 Stenotrophomonas maltophilia R551-3 6477883 YP_002027169.1 CDS rplQ NC_011071.1 900180 900563 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 900180..900563 Stenotrophomonas maltophilia R551-3 6477884 YP_002027170.1 CDS Smal_0782 NC_011071.1 900801 901307 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 900801..901307 Stenotrophomonas maltophilia R551-3 6477885 YP_002027171.1 CDS Smal_0783 NC_011071.1 901413 903539 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xom:XOO_0893 colicin I receptor; TonB-dependent receptor complement(901413..903539) Stenotrophomonas maltophilia R551-3 6477886 YP_002027172.1 CDS Smal_0784 NC_011071.1 903761 905152 D KEGG: xom:XOO_0892 family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 903761..905152 Stenotrophomonas maltophilia R551-3 6477887 YP_002027173.1 CDS Smal_0785 NC_011071.1 905925 907112 D PFAM: MscS Mechanosensitive ion channel; KEGG: xcb:XC_3312 membrane protein; mechanosensitive ion channel MscS 905925..907112 Stenotrophomonas maltophilia R551-3 6477888 YP_002027174.1 CDS Smal_0786 NC_011071.1 907189 908811 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(907189..908811) Stenotrophomonas maltophilia R551-3 6477889 YP_002027175.1 CDS Smal_0787 NC_011071.1 908853 909320 R KEGG: xcb:XC_3310 hypothetical protein; hypothetical protein complement(908853..909320) Stenotrophomonas maltophilia R551-3 6477890 YP_002027176.1 CDS Smal_0788 NC_011071.1 909332 911179 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: xcv:XCV1032 GTP-binding elongation factor protein; GTP-binding protein TypA complement(909332..911179) Stenotrophomonas maltophilia R551-3 6477891 YP_002027177.1 CDS Smal_0789 NC_011071.1 911419 911910 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: xac:XAC1005 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 911419..911910 Stenotrophomonas maltophilia R551-3 6477892 YP_002027178.1 CDS Smal_0790 NC_011071.1 912029 913015 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 912029..913015 Stenotrophomonas maltophilia R551-3 6477893 YP_002027179.1 CDS Smal_0791 NC_011071.1 913138 913752 D PFAM: pseudouridine synthase; KEGG: dar:Daro_4154 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 913138..913752 Stenotrophomonas maltophilia R551-3 6477894 YP_002027180.1 CDS prpE NC_011071.1 914433 916313 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 914433..916313 Stenotrophomonas maltophilia R551-3 6477895 YP_002027181.1 CDS Smal_0793 NC_011071.1 916536 917051 D KEGG: reh:H16_A1920 hypothetical protein; hypothetical protein 916536..917051 Stenotrophomonas maltophilia R551-3 6477896 YP_002027182.1 CDS Smal_0794 NC_011071.1 917085 918140 D KEGG: bur:Bcep18194_A6286 hypothetical protein; hypothetical protein 917085..918140 Stenotrophomonas maltophilia R551-3 6477979 YP_002027183.1 CDS Smal_0795 NC_011071.1 918219 918830 R PFAM: Glutathione S-transferase domain; KEGG: bpa:BPP2935 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(918219..918830) Stenotrophomonas maltophilia R551-3 6477980 YP_002027184.1 CDS Smal_0796 NC_011071.1 918915 919373 R PFAM: cell wall hydrolase SleB; KEGG: xcb:XC_3305 hypothetical protein; cell wall hydrolase SleB complement(918915..919373) Stenotrophomonas maltophilia R551-3 6477981 YP_002027185.1 CDS Smal_0797 NC_011071.1 919671 921701 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: xac:XAC1010 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase complement(919671..921701) Stenotrophomonas maltophilia R551-3 6477982 YP_002027186.1 CDS Smal_0798 NC_011071.1 921775 922416 R PFAM: protein of unknown function DUF161; KEGG: cmi:CMM_0762 hypothetical protein; hypothetical protein complement(921775..922416) Stenotrophomonas maltophilia R551-3 6477983 YP_002027187.1 CDS Smal_0799 NC_011071.1 922654 923673 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xac:XAC1011 oxidoreductase; zinc-binding alcohol dehydrogenase family protein complement(922654..923673) Stenotrophomonas maltophilia R551-3 6477984 YP_002027188.1 CDS Smal_0800 NC_011071.1 924031 925119 D PFAM: OmpA/MotB domain protein; KEGG: xac:XAC1012 outer membrane protein; OmpA/MotB domain-containing protein 924031..925119 Stenotrophomonas maltophilia R551-3 6477985 YP_002027189.1 CDS Smal_0801 NC_011071.1 925349 925855 D KEGG: xom:XOO_3489 hypothetical protein; hypothetical protein 925349..925855 Stenotrophomonas maltophilia R551-3 6477986 YP_002027190.1 CDS Smal_0802 NC_011071.1 925876 926682 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xom:XOO_3488 pseudouridylate synthase; pseudouridine synthase 925876..926682 Stenotrophomonas maltophilia R551-3 6477987 YP_002027191.1 CDS Smal_0803 NC_011071.1 926767 927102 D KEGG: xfn:XfasM23_0617 hypothetical protein; hypothetical protein 926767..927102 Stenotrophomonas maltophilia R551-3 6477988 YP_002027192.1 CDS Smal_0804 NC_011071.1 927202 928410 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(927202..928410) Stenotrophomonas maltophilia R551-3 6477989 YP_002027193.1 CDS Smal_0805 NC_011071.1 928616 929311 D PFAM: conserved hypothetical protein; KEGG: xcv:XCV1051 putative secreted protein; hypothetical protein 928616..929311 Stenotrophomonas maltophilia R551-3 6477990 YP_002027194.1 CDS tdh NC_011071.1 929472 930509 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(929472..930509) Stenotrophomonas maltophilia R551-3 6477991 YP_002027195.1 CDS Smal_0807 NC_011071.1 930802 932964 D KEGG: xom:XOO_3477 hypothetical protein; hypothetical protein 930802..932964 Stenotrophomonas maltophilia R551-3 6477992 YP_002027196.1 CDS Smal_0808 NC_011071.1 933164 933808 D PFAM: Phosphoglycerate mutase; KEGG: xcb:XC_3287 phosphoglycerate mutase; phosphoglycerate mutase 933164..933808 Stenotrophomonas maltophilia R551-3 6477993 YP_002027197.1 CDS Smal_0809 NC_011071.1 933850 935121 D TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: xcb:XC_3285 folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 933850..935121 Stenotrophomonas maltophilia R551-3 6477994 YP_002027198.1 CDS Smal_0810 NC_011071.1 935203 936243 D PFAM: Sporulation domain protein; KEGG: xcb:XC_3284 hypothetical protein; sporulation domain-containing protein 935203..936243 Stenotrophomonas maltophilia R551-3 6477995 YP_002027199.1 CDS Smal_0811 NC_011071.1 936290 937069 D PFAM: Colicin V production protein; KEGG: xcb:XC_3283 colicin V production protein; colicin V production protein 936290..937069 Stenotrophomonas maltophilia R551-3 6477996 YP_002027200.1 CDS Smal_0812 NC_011071.1 937100 938566 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 937100..938566 Stenotrophomonas maltophilia R551-3 6477997 YP_002027201.1 CDS Smal_0813 NC_011071.1 938576 939400 D PFAM: protein of unknown function DUF455; KEGG: xcb:XC_3281 hypothetical protein; hypothetical protein 938576..939400 Stenotrophomonas maltophilia R551-3 6477998 YP_002027202.1 CDS Smal_0814 NC_011071.1 939468 940925 R KEGG: pfo:PflO1_5597 rhs element Vgr protein; rhs element Vgr protein complement(939468..940925) Stenotrophomonas maltophilia R551-3 6477999 YP_002027203.1 CDS Smal_0815 NC_011071.1 941151 942404 D KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; peptidyl-Asp metalloendopeptidase 941151..942404 Stenotrophomonas maltophilia R551-3 6478000 YP_002027204.1 CDS Smal_0816 NC_011071.1 942492 943238 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(942492..943238) Stenotrophomonas maltophilia R551-3 6478001 YP_002027205.1 CDS Smal_0817 NC_011071.1 943399 943938 R PFAM: phosphoesterase PA-phosphatase related; KEGG: xcb:XC_3277 hypothetical protein; PA-phosphatase-like phosphoesterase complement(943399..943938) Stenotrophomonas maltophilia R551-3 6478002 YP_002027206.1 CDS Smal_0818 NC_011071.1 943919 945064 R PFAM: glycosyl transferase group 1; KEGG: xac:XAC1038 glycosyl transferase; group 1 glycosyl transferase complement(943919..945064) Stenotrophomonas maltophilia R551-3 6478003 YP_002027207.1 CDS Smal_0819 NC_011071.1 945209 948133 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor plug complement(945209..948133) Stenotrophomonas maltophilia R551-3 6478004 YP_002027208.1 CDS Smal_0820 NC_011071.1 948466 951393 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor complement(948466..951393) Stenotrophomonas maltophilia R551-3 6478005 YP_002027209.1 CDS Smal_0821 NC_011071.1 951688 953214 R PFAM: Ppx/GppA phosphatase; KEGG: xcb:XC_3275 exopolyphosphatase; Ppx/GppA phosphatase complement(951688..953214) Stenotrophomonas maltophilia R551-3 6478006 YP_002027210.1 CDS Smal_0822 NC_011071.1 953571 955658 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(953571..955658) Stenotrophomonas maltophilia R551-3 6478007 YP_002027211.1 CDS Smal_0823 NC_011071.1 955663 956994 R TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3273 two-component system sensor protein; PAS/PAC sensor signal transduction histidine kinase complement(955663..956994) Stenotrophomonas maltophilia R551-3 6478008 YP_002027212.1 CDS Smal_0824 NC_011071.1 957101 957790 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcb:XC_3272 two-component system regulatory protein; winged helix family two component transcriptional regulator complement(957101..957790) Stenotrophomonas maltophilia R551-3 6478009 YP_002027213.1 CDS Smal_0825 NC_011071.1 957907 959607 R PFAM: peptidase M48 Ste24p; KEGG: xcb:XC_3271 hypothetical protein; peptidase M48 Ste24p complement(957907..959607) Stenotrophomonas maltophilia R551-3 6478010 YP_002027214.1 CDS Smal_0826 NC_011071.1 959696 959986 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: xac:XAC1044 glutaredoxin; glutaredoxin 3 959696..959986 Stenotrophomonas maltophilia R551-3 6478011 YP_002027215.1 CDS Smal_0827 NC_011071.1 959983 960375 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: xcb:XC_3269 hypothetical protein; alkylhydroperoxidase-like protein 959983..960375 Stenotrophomonas maltophilia R551-3 6478012 YP_002027216.1 CDS Smal_0828 NC_011071.1 960733 961737 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 960733..961737 Stenotrophomonas maltophilia R551-3 6478013 YP_002027217.1 CDS Smal_0829 NC_011071.1 961997 962731 D PFAM: isochorismatase hydrolase; KEGG: bcm:Bcenmc03_5543 isochorismatase hydrolase; isochorismatase hydrolase 961997..962731 Stenotrophomonas maltophilia R551-3 6478014 YP_002027218.1 CDS Smal_0830 NC_011071.1 962815 963723 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcm:Bcenmc03_4209 transcriptional regulator, LysR family; LysR family transcriptional regulator 962815..963723 Stenotrophomonas maltophilia R551-3 6478015 YP_002027219.1 CDS Smal_0831 NC_011071.1 963749 964510 D PFAM: protein of unknown function DUF81; KEGG: dac:Daci_2500 protein of unknown function DUF81; hypothetical protein 963749..964510 Stenotrophomonas maltophilia R551-3 6478016 YP_002027220.1 CDS Smal_0832 NC_011071.1 964514 965134 R KEGG: aav:Aave_0081 hypothetical protein; hypothetical protein complement(964514..965134) Stenotrophomonas maltophilia R551-3 6478017 YP_002027221.1 CDS Smal_0833 NC_011071.1 965289 966047 R PFAM: protein of unknown function DUF1112; KEGG: xcb:XC_3267 hypothetical protein; hypothetical protein complement(965289..966047) Stenotrophomonas maltophilia R551-3 6478018 YP_002027222.1 CDS Smal_0834 NC_011071.1 967324 967692 D KEGG: tbr:Tb10.70.3190 hypothetical protein; hypothetical protein 967324..967692 Stenotrophomonas maltophilia R551-3 6478024 YP_002027223.1 CDS tig NC_011071.1 968106 969401 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 968106..969401 Stenotrophomonas maltophilia R551-3 6478026 YP_002027224.1 CDS clpP NC_011071.1 969478 970104 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 969478..970104 Stenotrophomonas maltophilia R551-3 6478027 YP_002027225.1 CDS clpX NC_011071.1 970231 971520 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 970231..971520 Stenotrophomonas maltophilia R551-3 6478028 YP_002027226.1 CDS Smal_0838 NC_011071.1 971663 974113 D KEGG: xcb:XC_3263 ATP-dependent serine proteinase La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 971663..974113 Stenotrophomonas maltophilia R551-3 6478029 YP_002027227.1 CDS Smal_0839 NC_011071.1 974331 974603 D PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV1084 histone-like protein; histone family protein DNA-binding protein 974331..974603 Stenotrophomonas maltophilia R551-3 6478030 YP_002027228.1 CDS Smal_0840 NC_011071.1 975495 977450 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xcv:XCV1085 peptidylprolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 975495..977450 Stenotrophomonas maltophilia R551-3 6478036 YP_002027229.1 CDS Smal_0841 NC_011071.1 977660 978859 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: xcv:XCV1086 membrane-bound murein hydrolase D; Lytic transglycosylase complement(977660..978859) Stenotrophomonas maltophilia R551-3 6478037 YP_002027230.1 CDS Smal_0842 NC_011071.1 978856 979620 R KEGG: xcb:XC_3258 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(978856..979620) Stenotrophomonas maltophilia R551-3 6478038 YP_002027231.1 CDS Smal_0843 NC_011071.1 979632 980276 D KEGG: xcb:XC_3257 hypothetical protein; hypothetical protein 979632..980276 Stenotrophomonas maltophilia R551-3 6478039 YP_002027232.1 CDS rnhA NC_011071.1 980290 980742 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 980290..980742 Stenotrophomonas maltophilia R551-3 6478040 YP_002027233.1 CDS Smal_0845 NC_011071.1 980747 981478 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 980747..981478 Stenotrophomonas maltophilia R551-3 6478041 YP_002027234.1 CDS Smal_0846 NC_011071.1 981548 982252 R PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: xcb:XC_3254 protein phosphatase; protein serine/threonine phosphatase complement(981548..982252) Stenotrophomonas maltophilia R551-3 6478042 YP_002027235.1 CDS Smal_0847 NC_011071.1 983834 986848 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: xau:Xaut_3532 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein complement(983834..986848) Stenotrophomonas maltophilia R551-3 6478044 YP_002027236.1 CDS Smal_0848 NC_011071.1 987140 987544 D KEGG: xcb:XC_3253 hypothetical protein; hypothetical protein 987140..987544 Stenotrophomonas maltophilia R551-3 6478045 YP_002027237.1 CDS Smal_0849 NC_011071.1 987563 988609 R PFAM: glycosyl transferase family 9; KEGG: xac:XAC1094 saccharide biosynthesis regulatory protein; glycosyl transferase family protein complement(987563..988609) Stenotrophomonas maltophilia R551-3 6478046 YP_002027238.1 CDS Smal_0850 NC_011071.1 988630 989379 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 988630..989379 Stenotrophomonas maltophilia R551-3 6478047 YP_002027239.1 CDS Smal_0851 NC_011071.1 989379 990146 D PFAM: beta-lactamase domain protein; KEGG: xac:XAC1096 hypothetical protein; beta-lactamase domain-containing protein 989379..990146 Stenotrophomonas maltophilia R551-3 6478048 YP_002027240.1 CDS Smal_0852 NC_011071.1 990143 990532 D KEGG: xcb:XC_3248 hypothetical protein; hypothetical protein 990143..990532 Stenotrophomonas maltophilia R551-3 6478049 YP_002027241.1 CDS Smal_0853 NC_011071.1 991036 991353 D PFAM: small multidrug resistance protein; KEGG: dac:Daci_0685 small multidrug resistance protein; small multidrug resistance protein 991036..991353 Stenotrophomonas maltophilia R551-3 6478051 YP_002027242.1 CDS Smal_0854 NC_011071.1 991711 1002600 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein; KEGG: bmu:Bmul_4115 outer membrane autotransporter barrel domain protein; outer membrane autotransporter barrel domain-containing protein 991711..1002600 Stenotrophomonas maltophilia R551-3 6478052 YP_002027243.1 CDS Smal_0855 NC_011071.1 1002658 1003101 R PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_3986 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1002658..1003101) Stenotrophomonas maltophilia R551-3 6478053 YP_002027244.1 CDS Smal_0856 NC_011071.1 1003222 1004016 D KEGG: sbm:Shew185_3483 hypothetical protein; hypothetical protein 1003222..1004016 Stenotrophomonas maltophilia R551-3 6478054 YP_002027245.1 CDS Smal_0857 NC_011071.1 1004691 1006736 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1004691..1006736 Stenotrophomonas maltophilia R551-3 6478056 YP_002027246.1 CDS Smal_0858 NC_011071.1 1006743 1007063 D PFAM: conserved hypothetical protein; KEGG: xcv:XCV1128 hypothetical protein; hypothetical protein 1006743..1007063 Stenotrophomonas maltophilia R551-3 6478057 YP_002027247.1 CDS recR NC_011071.1 1007175 1007774 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1007175..1007774 Stenotrophomonas maltophilia R551-3 6478058 YP_002027248.1 CDS Smal_0860 NC_011071.1 1007842 1008201 D PFAM: histidine triad (HIT) protein; KEGG: xfn:XfasM23_1120 histidine triad (HIT) protein; histidine triad (HIT) protein 1007842..1008201 Stenotrophomonas maltophilia R551-3 6478059 YP_002027249.1 CDS Smal_0861 NC_011071.1 1008282 1008809 R PFAM: outer membrane lipoprotein Slp; KEGG: xcb:XC_3240 outer membrane protein Slp; outer membrane lipoprotein Slp complement(1008282..1008809) Stenotrophomonas maltophilia R551-3 6478060 YP_002027250.1 CDS Smal_0862 NC_011071.1 1008806 1010755 R PFAM: transglutaminase domain protein; KEGG: xcv:XCV1132 putative transglutaminase-like superfamily protein; transglutaminase domain-containing protein complement(1008806..1010755) Stenotrophomonas maltophilia R551-3 6478134 YP_002027251.1 CDS Smal_0863 NC_011071.1 1010748 1011692 R PFAM: protein of unknown function DUF58; KEGG: xom:XOO_0970 hypothetical protein; hypothetical protein complement(1010748..1011692) Stenotrophomonas maltophilia R551-3 6478135 YP_002027252.1 CDS Smal_0864 NC_011071.1 1011695 1012648 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV1134 MoxR-like ATPase; ATPase complement(1011695..1012648) Stenotrophomonas maltophilia R551-3 6478136 YP_002027253.1 CDS Smal_0865 NC_011071.1 1012691 1014526 D KEGG: xcb:XC_3236 hypothetical protein; hypothetical protein 1012691..1014526 Stenotrophomonas maltophilia R551-3 6478137 YP_002027254.1 CDS Smal_0866 NC_011071.1 1014647 1015216 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: xom:XOO_0800 Maf-like protein; maf protein complement(1014647..1015216) Stenotrophomonas maltophilia R551-3 6478138 YP_002027255.1 CDS Smal_0867 NC_011071.1 1015330 1015839 D PFAM: protein of unknown function DUF177; KEGG: xcb:XC_3231 hypothetical protein; hypothetical protein 1015330..1015839 Stenotrophomonas maltophilia R551-3 6478139 YP_002027256.1 CDS rpmF NC_011071.1 1015948 1016142 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1015948..1016142 Stenotrophomonas maltophilia R551-3 6478140 YP_002027257.1 CDS Smal_0869 NC_011071.1 1016234 1017211 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1016234..1017211 Stenotrophomonas maltophilia R551-3 6478141 YP_002027258.1 CDS Smal_0870 NC_011071.1 1017288 1018070 D KEGG: ngo:NGO0688 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 1017288..1018070 Stenotrophomonas maltophilia R551-3 6478142 YP_002027259.1 CDS Smal_0871 NC_011071.1 1018239 1019183 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: xcb:XC_3228 acyl-carrier-protein S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1018239..1019183 Stenotrophomonas maltophilia R551-3 6478143 YP_002027260.1 CDS fabG NC_011071.1 1019266 1020009 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1019266..1020009 Stenotrophomonas maltophilia R551-3 6478144 YP_002027261.1 CDS acpP NC_011071.1 1020162 1020401 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1020162..1020401 Stenotrophomonas maltophilia R551-3 6478145 YP_002027262.1 CDS Smal_0874 NC_011071.1 1020545 1021807 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1020545..1021807 Stenotrophomonas maltophilia R551-3 6478146 YP_002027263.1 CDS Smal_0875 NC_011071.1 1021900 1023264 D KEGG: xcb:XC_3224 hypothetical protein; TIGRFAM: para-aminobenzoate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; hypothetical protein 1021900..1023264 Stenotrophomonas maltophilia R551-3 6478147 YP_002027264.1 CDS Smal_0876 NC_011071.1 1023462 1024523 D PFAM: aminodeoxychorismate lyase; KEGG: xcb:XC_3223 hypothetical protein; aminodeoxychorismate lyase 1023462..1024523 Stenotrophomonas maltophilia R551-3 6478148 YP_002027265.1 CDS Smal_0877 NC_011071.1 1024520 1025185 D PFAM: thymidylate kinase; KEGG: pmy:Pmen_1633 thymidylate kinase; dTMP kinase 1024520..1025185 Stenotrophomonas maltophilia R551-3 6478149 YP_002027266.1 CDS Smal_0878 NC_011071.1 1025182 1026138 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1025182..1026138 Stenotrophomonas maltophilia R551-3 6478150 YP_002027267.1 CDS Smal_0879 NC_011071.1 1026135 1026488 D PFAM: type IV pilus assembly PilZ; KEGG: xcb:XC_3221 type IV fimbriae assembly protein; type IV pilus assembly PilZ 1026135..1026488 Stenotrophomonas maltophilia R551-3 6478151 YP_002027268.1 CDS Smal_0880 NC_011071.1 1026985 1027365 D PFAM: 4-oxalocrotonate tautomerase; KEGG: pfo:PflO1_3399 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 1026985..1027365 Stenotrophomonas maltophilia R551-3 6478153 YP_002027269.1 CDS Smal_0881 NC_011071.1 1027397 1028470 R PFAM: late control D family protein; KEGG: xfa:XF2479 hypothetical protein; late control D family protein complement(1027397..1028470) Stenotrophomonas maltophilia R551-3 6478154 YP_002027270.1 CDS Smal_0882 NC_011071.1 1028461 1028676 R PFAM: tail X family protein; KEGG: xfa:XF2480 phage-related tail protein; tail X family protein complement(1028461..1028676) Stenotrophomonas maltophilia R551-3 6478155 YP_002027271.1 CDS Smal_0883 NC_011071.1 1028660 1029127 R PFAM: P2 GpU family protein; KEGG: xfm:Xfasm12_1132 phage-related tail protein; P2 GpU family protein complement(1028660..1029127) Stenotrophomonas maltophilia R551-3 6478156 YP_002027272.1 CDS Smal_0884 NC_011071.1 1029130 1031601 R TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: spe:Spro_4911 phage tail tape measure protein, TP901 family; phage tail tape measure protein, TP901 family complement(1029130..1031601) Stenotrophomonas maltophilia R551-3 6478157 YP_002027273.1 CDS Smal_0885 NC_011071.1 1031722 1032012 R KEGG: xfn:XfasM23_1156 hypothetical protein; hypothetical protein complement(1031722..1032012) Stenotrophomonas maltophilia R551-3 6478158 YP_002027274.1 CDS Smal_0886 NC_011071.1 1032093 1032596 R TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: xfa:XF2484 hypothetical protein; phage major tail tube protein complement(1032093..1032596) Stenotrophomonas maltophilia R551-3 6478159 YP_002027275.1 CDS Smal_0887 NC_011071.1 1032599 1033801 R PFAM: tail sheath protein; KEGG: sit:TM1040_1284 phage tail sheath protein; tail sheath protein complement(1032599..1033801) Stenotrophomonas maltophilia R551-3 6478160 YP_002027276.1 CDS Smal_0888 NC_011071.1 1033908 1034567 R KEGG: xac:XAC2659 hypothetical protein; hypothetical protein complement(1033908..1034567) Stenotrophomonas maltophilia R551-3 6478161 YP_002027277.1 CDS Smal_0889 NC_011071.1 1034569 1036539 R KEGG: xoo:XOO1698 hypothetical protein; hypothetical protein complement(1034569..1036539) Stenotrophomonas maltophilia R551-3 6478162 YP_002027278.1 CDS Smal_0890 NC_011071.1 1036547 1037848 R TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: xac:XAC2656 phage-related tail protein; phage tail protein I complement(1036547..1037848) Stenotrophomonas maltophilia R551-3 6478163 YP_002027279.1 CDS Smal_0891 NC_011071.1 1037841 1038737 R PFAM: Baseplate J family protein; KEGG: xac:XAC2655 phage-related baseplate assembly protein; baseplate J family protein complement(1037841..1038737) Stenotrophomonas maltophilia R551-3 6478164 YP_002027280.1 CDS Smal_0892 NC_011071.1 1038740 1039078 R PFAM: GPW/gp25 family protein; KEGG: sit:TM1040_1292 gpW/GP25; GPW/gp25 family protein complement(1038740..1039078) Stenotrophomonas maltophilia R551-3 6478165 YP_002027281.1 CDS Smal_0893 NC_011071.1 1039131 1039721 R TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: xfm:Xfasm12_1145 phage-related baseplate assembly protein; phage baseplate assembly protein V complement(1039131..1039721) Stenotrophomonas maltophilia R551-3 6478166 YP_002027282.1 CDS Smal_0894 NC_011071.1 1039718 1040272 R KEGG: xfa:XF2493 hypothetical protein; hypothetical protein complement(1039718..1040272) Stenotrophomonas maltophilia R551-3 6478167 YP_002027283.1 CDS Smal_0895 NC_011071.1 1040625 1041002 R hypothetical protein complement(1040625..1041002) Stenotrophomonas maltophilia R551-3 6478168 YP_002027284.1 CDS Smal_0896 NC_011071.1 1040999 1041484 R PFAM: glycoside hydrolase family 24; KEGG: rso:RSc1700 probable bacteriophage endolysin protein; lysozyme complement(1040999..1041484) Stenotrophomonas maltophilia R551-3 6478169 YP_002027285.1 CDS Smal_0897 NC_011071.1 1041481 1041831 R KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein complement(1041481..1041831) Stenotrophomonas maltophilia R551-3 6478170 YP_002027286.1 CDS Smal_0898 NC_011071.1 1041828 1042277 R KEGG: xfn:XfasM23_1179 hypothetical protein; hypothetical protein complement(1041828..1042277) Stenotrophomonas maltophilia R551-3 6478171 YP_002027287.1 CDS Smal_0899 NC_011071.1 1042612 1042995 R hypothetical protein complement(1042612..1042995) Stenotrophomonas maltophilia R551-3 6478172 YP_002027288.1 CDS Smal_0900 NC_011071.1 1043148 1043786 R KEGG: pna:Pnap_2274 hypothetical protein; hypothetical protein complement(1043148..1043786) Stenotrophomonas maltophilia R551-3 6478173 YP_002027289.1 CDS Smal_0901 NC_011071.1 1043828 1044055 R hypothetical protein complement(1043828..1044055) Stenotrophomonas maltophilia R551-3 6478174 YP_002027290.1 CDS Smal_0902 NC_011071.1 1044130 1044405 R hypothetical protein complement(1044130..1044405) Stenotrophomonas maltophilia R551-3 6478175 YP_002027291.1 CDS Smal_0903 NC_011071.1 1044406 1046742 R PFAM: virulence-associated E family protein; KEGG: ppu:PP_3038 pyocin R2_PP, TraC domain protein; virulence-associated E family protein complement(1044406..1046742) Stenotrophomonas maltophilia R551-3 6478176 YP_002027292.1 CDS Smal_0904 NC_011071.1 1047228 1047452 D hypothetical protein 1047228..1047452 Stenotrophomonas maltophilia R551-3 6478177 YP_002027293.1 CDS Smal_0905 NC_011071.1 1047464 1047718 D hypothetical protein 1047464..1047718 Stenotrophomonas maltophilia R551-3 6478178 YP_002027294.1 CDS Smal_0906 NC_011071.1 1047935 1048330 D KEGG: xom:XOO_2682 hypothetical protein; hypothetical protein 1047935..1048330 Stenotrophomonas maltophilia R551-3 6478179 YP_002027295.1 CDS Smal_0907 NC_011071.1 1048460 1050598 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0405 TonB-dependent receptor; TonB-dependent siderophore receptor 1048460..1050598 Stenotrophomonas maltophilia R551-3 6478180 YP_002027296.1 CDS Smal_0908 NC_011071.1 1050610 1052109 D PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_0065 hypothetical protein; PepSY-associated TM helix domain-containing protein 1050610..1052109 Stenotrophomonas maltophilia R551-3 6478181 YP_002027297.1 CDS Smal_0909 NC_011071.1 1052119 1053252 R PFAM: major facilitator superfamily MFS_1; KEGG: psp:PSPPH_3280 transporter, putative; major facilitator superfamily protein complement(1052119..1053252) Stenotrophomonas maltophilia R551-3 6478182 YP_002027298.1 CDS Smal_0910 NC_011071.1 1053264 1054040 R PFAM: regulatory protein DeoR; KEGG: atc:AGR_C_4939 hypothetical protein; DeoR family transcriptional regulator complement(1053264..1054040) Stenotrophomonas maltophilia R551-3 6478183 YP_002027299.1 CDS Smal_0911 NC_011071.1 1054199 1054846 D PFAM: pentapeptide repeat protein; KEGG: spe:Spro_2059 pentapeptide repeat protein; pentapeptide repeat-containing protein 1054199..1054846 Stenotrophomonas maltophilia R551-3 6478184 YP_002027300.1 CDS Smal_0912 NC_011071.1 1054850 1055524 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpb:RPB_3655 SAM binding protein; type 12 methyltransferase complement(1054850..1055524) Stenotrophomonas maltophilia R551-3 6478185 YP_002027301.1 CDS Smal_0913 NC_011071.1 1055623 1057002 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ppw:PputW619_3084 transcriptional regulator, GntR family with aminotransferase domain; GntR family transcriptional regulator complement(1055623..1057002) Stenotrophomonas maltophilia R551-3 6478186 YP_002027302.1 CDS Smal_0914 NC_011071.1 1057136 1057999 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: dac:Daci_1891 protein of unknown function DUF6 transmembrane; hypothetical protein 1057136..1057999 Stenotrophomonas maltophilia R551-3 6478187 YP_002027303.1 CDS Smal_0915 NC_011071.1 1058039 1058983 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2016 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1058039..1058983) Stenotrophomonas maltophilia R551-3 6478188 YP_002027304.1 CDS Smal_0916 NC_011071.1 1059082 1060599 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2916 major facilitator family transporter; major facilitator superfamily protein 1059082..1060599 Stenotrophomonas maltophilia R551-3 6478189 YP_002027305.1 CDS Smal_0917 NC_011071.1 1060583 1062673 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3560 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1060583..1062673) Stenotrophomonas maltophilia R551-3 6478190 YP_002027306.1 CDS Smal_0918 NC_011071.1 1062773 1064158 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_2572 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1062773..1064158) Stenotrophomonas maltophilia R551-3 6478191 YP_002027307.1 CDS Smal_0919 NC_011071.1 1064136 1064819 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3127 response regulator receiver:transcriptional regulatory protein, C-terminal; winged helix family two component transcriptional regulator complement(1064136..1064819) Stenotrophomonas maltophilia R551-3 6478192 YP_002027308.1 CDS Smal_0920 NC_011071.1 1064973 1066151 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2381 component of acridine efflux pump; RND family efflux transporter MFP subunit 1064973..1066151 Stenotrophomonas maltophilia R551-3 6478193 YP_002027309.1 CDS Smal_0921 NC_011071.1 1066156 1069257 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: nar:Saro_1219 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1066156..1069257 Stenotrophomonas maltophilia R551-3 6478194 YP_002027310.1 CDS Smal_0922 NC_011071.1 1069528 1069932 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aha:AHA_3760 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(1069528..1069932) Stenotrophomonas maltophilia R551-3 6478195 YP_002027311.1 CDS Smal_0923 NC_011071.1 1070104 1071078 D KEGG: xcv:XCV0860 hypothetical protein; hypothetical protein 1070104..1071078 Stenotrophomonas maltophilia R551-3 6478196 YP_002027312.1 CDS Smal_0924 NC_011071.1 1071078 1073102 D KEGG: xcb:XC_3476 hypothetical protein; hypothetical protein 1071078..1073102 Stenotrophomonas maltophilia R551-3 6478197 YP_002027313.1 CDS Smal_0925 NC_011071.1 1073226 1074563 R PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV3150 major facilitator superfamily protein; major facilitator superfamily protein complement(1073226..1074563) Stenotrophomonas maltophilia R551-3 6478198 YP_002027314.1 CDS Smal_0926 NC_011071.1 1074677 1075111 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: xac:XAC3000 transcriptional regulator SoxR family; MerR family transcriptional regulator 1074677..1075111 Stenotrophomonas maltophilia R551-3 6478199 YP_002027315.1 CDS Smal_0927 NC_011071.1 1075184 1075786 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc3331 short chain dehydrogenase; short chain dehydrogenase complement(1075184..1075786) Stenotrophomonas maltophilia R551-3 6478200 YP_002027316.1 CDS Smal_0928 NC_011071.1 1075887 1076762 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_3137 transcriptional regulator, LysR family; LysR family transcriptional regulator 1075887..1076762 Stenotrophomonas maltophilia R551-3 6478201 YP_002027317.1 CDS Smal_0929 NC_011071.1 1076822 1077643 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1076822..1077643) Stenotrophomonas maltophilia R551-3 6478202 YP_002027318.1 CDS Smal_0930 NC_011071.1 1077662 1078339 R PFAM: alanine racemase domain protein; KEGG: xcv:XCV3069 hypothetical protein; alanine racemase domain-containing protein complement(1077662..1078339) Stenotrophomonas maltophilia R551-3 6478203 YP_002027319.1 CDS Smal_0931 NC_011071.1 1078427 1079464 D KEGG: xac:XAC2924 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1078427..1079464 Stenotrophomonas maltophilia R551-3 6478204 YP_002027320.1 CDS Smal_0932 NC_011071.1 1079474 1080691 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: xac:XAC2923 twitching motility protein; twitching motility protein 1079474..1080691 Stenotrophomonas maltophilia R551-3 6478205 YP_002027321.1 CDS Smal_0933 NC_011071.1 1080844 1081827 D PFAM: aldo/keto reductase; KEGG: xcb:XC_1436 oxidoreductase; aldo/keto reductase 1080844..1081827 Stenotrophomonas maltophilia R551-3 6478206 YP_002027322.1 CDS Smal_0934 NC_011071.1 1081883 1082782 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_1437 transcriptional regulator LysR family; LysR family transcriptional regulator complement(1081883..1082782) Stenotrophomonas maltophilia R551-3 6478207 YP_002027323.1 CDS Smal_0935 NC_011071.1 1082876 1083085 D KEGG: pfl:PFL_2771 hypothetical protein; hypothetical protein 1082876..1083085 Stenotrophomonas maltophilia R551-3 6478290 YP_002027324.1 CDS Smal_0936 NC_011071.1 1083182 1083631 D PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_1842 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1083182..1083631 Stenotrophomonas maltophilia R551-3 6478291 YP_002027325.1 CDS Smal_0937 NC_011071.1 1083725 1084432 D PFAM: protein of unknown function DUF161; KEGG: xcv:XCV3066 hypothetical protein; hypothetical protein 1083725..1084432 Stenotrophomonas maltophilia R551-3 6478292 YP_002027326.1 CDS Smal_0938 NC_011071.1 1084506 1085048 R PFAM: methyladenine glycosylase; KEGG: xcv:XCV3064 DNA-3-methyladenine glycosylase I; methyladenine glycosylase complement(1084506..1085048) Stenotrophomonas maltophilia R551-3 6478293 YP_002027327.1 CDS Smal_0939 NC_011071.1 1085045 1086832 R KEGG: xcb:XC_1364 hypothetical protein; hypothetical protein complement(1085045..1086832) Stenotrophomonas maltophilia R551-3 6478294 YP_002027328.1 CDS Smal_0940 NC_011071.1 1086924 1087490 D PFAM: protein of unknown function DUF179; KEGG: xcb:XC_1365 hypothetical protein; hypothetical protein 1086924..1087490 Stenotrophomonas maltophilia R551-3 6478295 YP_002027329.1 CDS Smal_0941 NC_011071.1 1087483 1087977 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1087483..1087977 Stenotrophomonas maltophilia R551-3 6478296 YP_002027330.1 CDS pyrB NC_011071.1 1087993 1088943 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1087993..1088943 Stenotrophomonas maltophilia R551-3 6478297 YP_002027331.1 CDS Smal_0943 NC_011071.1 1089192 1089683 D PFAM: protein of unknown function DUF1568; KEGG: psb:Psyr_4421 protein of unknown function DUF1568; hypothetical protein 1089192..1089683 Stenotrophomonas maltophilia R551-3 6478298 YP_002027332.1 CDS Smal_0944 NC_011071.1 1089804 1090601 R KEGG: xac:XAC2981 hypothetical protein; hypothetical protein complement(1089804..1090601) Stenotrophomonas maltophilia R551-3 6478299 YP_002027333.1 CDS Smal_0945 NC_011071.1 1090672 1090938 R hypothetical protein complement(1090672..1090938) Stenotrophomonas maltophilia R551-3 6478300 YP_002027334.1 CDS Smal_0946 NC_011071.1 1091000 1092361 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: xac:XAC2980 Mg++ transporter; magnesium transporter complement(1091000..1092361) Stenotrophomonas maltophilia R551-3 6478301 YP_002027335.1 CDS Smal_0947 NC_011071.1 1092542 1094311 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: xcc:XCC2809 phosphotransferase system enzyme I; phosphoenolpyruvate-protein phosphotransferase complement(1092542..1094311) Stenotrophomonas maltophilia R551-3 6478302 YP_002027336.1 CDS Smal_0948 NC_011071.1 1094314 1094583 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: xcb:XC_1305 phosphotransferase system HPr enzyme; phosphotransferase system, phosphocarrier protein HPr complement(1094314..1094583) Stenotrophomonas maltophilia R551-3 6478303 YP_002027337.1 CDS Smal_0949 NC_011071.1 1094576 1094968 R PFAM: PTS system fructose subfamily IIA component; KEGG: xom:XOO_1177 hypothetical protein; PTS system fructose subfamily transporter subunit IIA complement(1094576..1094968) Stenotrophomonas maltophilia R551-3 6478304 YP_002027338.1 CDS Smal_0950 NC_011071.1 1095541 1096425 R PFAM: conserved hypothetical protein; KEGG: xcb:XC_1307 hypothetical protein; hypothetical protein complement(1095541..1096425) Stenotrophomonas maltophilia R551-3 6478305 YP_002027339.1 CDS Smal_0951 NC_011071.1 1096453 1097403 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(1096453..1097403) Stenotrophomonas maltophilia R551-3 6478306 YP_002027340.1 CDS Smal_0952 NC_011071.1 1097400 1097852 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: xcv:XCV3120 putative nitrogen regulatory IIA protein (protein-N(pi)-phosphohistidine-sugar phosphotransferase); putative PTS IIA-like nitrogen-regulatory protein PtsN complement(1097400..1097852) Stenotrophomonas maltophilia R551-3 6478307 YP_002027341.1 CDS Smal_0953 NC_011071.1 1097874 1098191 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: xac:XAC2973 sigma-54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1097874..1098191) Stenotrophomonas maltophilia R551-3 6478308 YP_002027342.1 CDS Smal_0954 NC_011071.1 1098250 1099674 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1098250..1099674) Stenotrophomonas maltophilia R551-3 6478309 YP_002027343.1 CDS Smal_0955 NC_011071.1 1099715 1100434 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1312 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1099715..1100434) Stenotrophomonas maltophilia R551-3 6478310 YP_002027344.1 CDS Smal_0956 NC_011071.1 1100434 1100985 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: xac:XAC2970 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA complement(1100434..1100985) Stenotrophomonas maltophilia R551-3 6478311 YP_002027345.1 CDS Smal_0957 NC_011071.1 1101090 1101665 R PFAM: protein of unknown function DUF1239; KEGG: xac:XAC2969 hypothetical protein; hypothetical protein complement(1101090..1101665) Stenotrophomonas maltophilia R551-3 6478312 YP_002027346.1 CDS Smal_0958 NC_011071.1 1101662 1102210 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: xcb:XC_1315 hypothetical protein; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1101662..1102210) Stenotrophomonas maltophilia R551-3 6478313 YP_002027347.1 CDS Smal_0959 NC_011071.1 1102277 1103278 R KEGG: xom:XOO_1188 polysialic acid capsule expression protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(1102277..1103278) Stenotrophomonas maltophilia R551-3 6478314 YP_002027348.1 CDS Smal_0960 NC_011071.1 1103333 1103563 D PFAM: BolA family protein; KEGG: xfn:XfasM23_0676 BolA family protein; BolA family protein 1103333..1103563 Stenotrophomonas maltophilia R551-3 6478315 YP_002027349.1 CDS Smal_0961 NC_011071.1 1103585 1104856 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1103585..1104856 Stenotrophomonas maltophilia R551-3 6478316 YP_002027350.1 CDS Smal_0962 NC_011071.1 1104853 1105182 D KEGG: xcv:XCV3109 hypothetical protein; hypothetical protein 1104853..1105182 Stenotrophomonas maltophilia R551-3 6478317 YP_002027351.1 CDS Smal_0963 NC_011071.1 1105313 1105996 R KEGG: xac:XAC2963 hypothetical protein; hypothetical protein complement(1105313..1105996) Stenotrophomonas maltophilia R551-3 6478318 YP_002027352.1 CDS Smal_0964 NC_011071.1 1105999 1106820 R KEGG: xcv:XCV3107 putative secreted protein; hypothetical protein complement(1105999..1106820) Stenotrophomonas maltophilia R551-3 6478319 YP_002027353.1 CDS purN NC_011071.1 1106888 1107547 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1106888..1107547) Stenotrophomonas maltophilia R551-3 6478320 YP_002027354.1 CDS Smal_0966 NC_011071.1 1107544 1108206 R KEGG: xom:XOO_1196 hypothetical protein; hypothetical protein complement(1107544..1108206) Stenotrophomonas maltophilia R551-3 6478321 YP_002027355.1 CDS Smal_0967 NC_011071.1 1108249 1108671 R KEGG: pca:Pcar_2289 hypothetical protein; hypothetical protein complement(1108249..1108671) Stenotrophomonas maltophilia R551-3 6478322 YP_002027356.1 CDS Smal_0968 NC_011071.1 1108668 1109156 R KEGG: xac:XAC2960 hypothetical protein; hypothetical protein complement(1108668..1109156) Stenotrophomonas maltophilia R551-3 6478323 YP_002027357.1 CDS Smal_0969 NC_011071.1 1109179 1110237 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1109179..1110237) Stenotrophomonas maltophilia R551-3 6478324 YP_002027358.1 CDS Smal_0970 NC_011071.1 1110349 1111476 D KEGG: xcb:XC_1325 hypothetical protein; hypothetical protein 1110349..1111476 Stenotrophomonas maltophilia R551-3 6478325 YP_002027359.1 CDS Smal_0971 NC_011071.1 1111473 1112642 D PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_1326 permease; hypothetical protein 1111473..1112642 Stenotrophomonas maltophilia R551-3 6478326 YP_002027360.1 CDS Smal_0972 NC_011071.1 1112642 1113349 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: xac:XAC2956 hypothetical protein; hypothetical protein 1112642..1113349 Stenotrophomonas maltophilia R551-3 6478327 YP_002027361.1 CDS Smal_0973 NC_011071.1 1113836 1114357 D PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein 1113836..1114357 Stenotrophomonas maltophilia R551-3 6478328 YP_002027362.1 CDS Smal_0974 NC_011071.1 1114354 1115187 D PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit 1114354..1115187 Stenotrophomonas maltophilia R551-3 6478329 YP_002027363.1 CDS Smal_0975 NC_011071.1 1115299 1116009 R PFAM: Nucleotidyl transferase; KEGG: xcv:XCV3100 putative nucleotidyltransferase; nucleotidyl transferase complement(1115299..1116009) Stenotrophomonas maltophilia R551-3 6478330 YP_002027364.1 CDS Smal_0976 NC_011071.1 1116006 1117031 R PFAM: aminoglycoside phosphotransferase; KEGG: xcv:XCV3099 putative phosphotransferase family protein; aminoglycoside phosphotransferase complement(1116006..1117031) Stenotrophomonas maltophilia R551-3 6478331 YP_002027365.1 CDS Smal_0977 NC_011071.1 1117096 1117365 R PFAM: Transglycosylase-associated protein; KEGG: xcb:XC_1330 hypothetical protein; transglycosylase-associated protein complement(1117096..1117365) Stenotrophomonas maltophilia R551-3 6478332 YP_002027366.1 CDS Smal_0978 NC_011071.1 1117436 1118929 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xcb:XC_1331 succinyl-diaminopimelate desuccinylase; peptidase M20 complement(1117436..1118929) Stenotrophomonas maltophilia R551-3 6478333 YP_002027367.1 CDS Smal_0979 NC_011071.1 1119129 1119455 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: xom:XOO_1207 DNA transport competence protein; competence protein ComEA 1119129..1119455 Stenotrophomonas maltophilia R551-3 6478334 YP_002027368.1 CDS Smal_0980 NC_011071.1 1119808 1120893 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pae:PA0732 hypothetical protein; hypothetical protein 1119808..1120893 Stenotrophomonas maltophilia R551-3 6478335 YP_002027369.1 CDS Smal_0981 NC_011071.1 1120911 1121636 D KEGG: xcb:XC_2385 hypothetical protein; hypothetical protein 1120911..1121636 Stenotrophomonas maltophilia R551-3 6478336 YP_002027370.1 CDS Smal_0982 NC_011071.1 1121671 1122282 D PFAM: protein of unknown function DUF886; KEGG: xcb:XC_1333 hypothetical protein; hypothetical protein 1121671..1122282 Stenotrophomonas maltophilia R551-3 6478337 YP_002027371.1 CDS Smal_0983 NC_011071.1 1122358 1123962 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: xcb:XC_1334 sulfite reductase; flavodoxin/nitric oxide synthase complement(1122358..1123962) Stenotrophomonas maltophilia R551-3 6478338 YP_002027372.1 CDS Smal_0984 NC_011071.1 1123959 1124930 R PFAM: ApbE family lipoprotein; KEGG: xcb:XC_1335 thiamine biosynthesis lipoprotein ApbE precursor; ApbE family lipoprotein complement(1123959..1124930) Stenotrophomonas maltophilia R551-3 6478339 YP_002027373.1 CDS Smal_0985 NC_011071.1 1124983 1125786 R KEGG: xac:XAC2946 hypothetical protein; hypothetical protein complement(1124983..1125786) Stenotrophomonas maltophilia R551-3 6478340 YP_002027374.1 CDS Smal_0986 NC_011071.1 1125863 1126381 R KEGG: xac:XAC2945 hypothetical protein; hypothetical protein complement(1125863..1126381) Stenotrophomonas maltophilia R551-3 6478341 YP_002027375.1 CDS Smal_0987 NC_011071.1 1126408 1127022 R PFAM: PepSY-associated TM helix domain protein; KEGG: xcb:XC_1338 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(1126408..1127022) Stenotrophomonas maltophilia R551-3 6478342 YP_002027376.1 CDS Smal_0988 NC_011071.1 1127278 1129698 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hne:HNE_1653 TonB-dependent receptor; TonB-dependent receptor plug complement(1127278..1129698) Stenotrophomonas maltophilia R551-3 6478343 YP_002027377.1 CDS Smal_0989 NC_011071.1 1129845 1130255 R KEGG: cpv:cgd5_2180 large low complexity protein with proline/alanine-rich repeat; hypothetical protein complement(1129845..1130255) Stenotrophomonas maltophilia R551-3 6478344 YP_002027378.1 CDS Smal_0990 NC_011071.1 1130420 1131097 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: mms:mma_3620 PiuC iron-regulated protein; 2OG-Fe(II) oxygenase complement(1130420..1131097) Stenotrophomonas maltophilia R551-3 6478345 YP_002027379.1 CDS Smal_0991 NC_011071.1 1131108 1131827 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: xac:XAC2943 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(1131108..1131827) Stenotrophomonas maltophilia R551-3 6478346 YP_002027380.1 CDS Smal_0992 NC_011071.1 1131896 1134184 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0864 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor complement(1131896..1134184) Stenotrophomonas maltophilia R551-3 6478347 YP_002027381.1 CDS Smal_0993 NC_011071.1 1134336 1134740 R KEGG: cel:F46H5.6 GRounDhog (hedgehog-like family); hypothetical protein complement(1134336..1134740) Stenotrophomonas maltophilia R551-3 6478348 YP_002027382.1 CDS Smal_0994 NC_011071.1 1134944 1135276 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: xac:XAC2940 benzene 1,2-dioxygenase ferredoxin protein; Rieske (2Fe-2S) domain-containing protein complement(1134944..1135276) Stenotrophomonas maltophilia R551-3 6478349 YP_002027383.1 CDS Smal_0995 NC_011071.1 1135273 1135812 R PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1343 acetyltransferase; N-acetyltransferase GCN5 complement(1135273..1135812) Stenotrophomonas maltophilia R551-3 6478350 YP_002027384.1 CDS Smal_0996 NC_011071.1 1136021 1136671 D PFAM: protein of unknown function DUF1568; KEGG: rru:Rru_B0033 hypothetical protein; hypothetical protein 1136021..1136671 Stenotrophomonas maltophilia R551-3 6478351 YP_002027385.1 CDS Smal_0997 NC_011071.1 1136788 1138044 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: xac:XAC2938 cysteine desulfurase; cysteine desulfurase complement(1136788..1138044) Stenotrophomonas maltophilia R551-3 6478352 YP_002027386.1 CDS Smal_0998 NC_011071.1 1138041 1139303 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: xcb:XC_1345 ABC transporter permease; FeS assembly protein SufD complement(1138041..1139303) Stenotrophomonas maltophilia R551-3 6478353 YP_002027387.1 CDS Smal_0999 NC_011071.1 1139303 1140073 R KEGG: xcb:XC_1346 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC complement(1139303..1140073) Stenotrophomonas maltophilia R551-3 6478354 YP_002027388.1 CDS Smal_1000 NC_011071.1 1140070 1140471 R hypothetical protein complement(1140070..1140471) Stenotrophomonas maltophilia R551-3 6478355 YP_002027389.1 CDS Smal_1001 NC_011071.1 1140471 1141946 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(1140471..1141946) Stenotrophomonas maltophilia R551-3 6478356 YP_002027390.1 CDS Smal_1002 NC_011071.1 1141964 1142419 R TIGRFAM: transcriptional regulator, Rrf2 family; FeS assembly SUF system regulator; PFAM: regulatory protein MarR; protein of unknown function UPF0074; transcriptional regulator TrmB; KEGG: xcv:XCV3078 putative transcriptional regulator, Rrf2 family; transcriptional regulator TrmB complement(1141964..1142419) Stenotrophomonas maltophilia R551-3 6478357 YP_002027391.1 CDS Smal_1003 NC_011071.1 1142631 1143098 D PFAM: nuclear protein SET; KEGG: xoo:XOO1407 hypothetical protein; nuclear protein SET 1142631..1143098 Stenotrophomonas maltophilia R551-3 6478358 YP_002027392.1 CDS Smal_1004 NC_011071.1 1143171 1143767 R KEGG: xcb:XC_1351 hypothetical protein; hypothetical protein complement(1143171..1143767) Stenotrophomonas maltophilia R551-3 6478359 YP_002027393.1 CDS Smal_1005 NC_011071.1 1143850 1144380 R KEGG: xac:XAC2930 hypothetical protein; hypothetical protein complement(1143850..1144380) Stenotrophomonas maltophilia R551-3 6478360 YP_002027394.1 CDS Smal_1006 NC_011071.1 1144437 1144745 R KEGG: xac:XAC2929 hypothetical protein; hypothetical protein complement(1144437..1144745) Stenotrophomonas maltophilia R551-3 6478361 YP_002027395.1 CDS Smal_1007 NC_011071.1 1144999 1145397 R PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1144999..1145397) Stenotrophomonas maltophilia R551-3 6478362 YP_002027396.1 CDS Smal_1008 NC_011071.1 1145769 1146200 D PFAM: OsmC family protein; KEGG: xom:XOO_1312 osmotically inducible protein; OsmC family protein 1145769..1146200 Stenotrophomonas maltophilia R551-3 6478363 YP_002027397.1 CDS Smal_1009 NC_011071.1 1146281 1147159 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: xcv:XCV3058 phenazine biosynthesis PhzF family protein; phenazine biosynthesis protein PhzF family complement(1146281..1147159) Stenotrophomonas maltophilia R551-3 6478364 YP_002027398.1 CDS Smal_1010 NC_011071.1 1147255 1148127 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: xcb:XC_1371 hypothetical protein; phenazine biosynthesis protein PhzF family complement(1147255..1148127) Stenotrophomonas maltophilia R551-3 6478365 YP_002027399.1 CDS Smal_1011 NC_011071.1 1148203 1150797 D catalyzes the 4-phospho-L-aspartate from L-aspartate and the formation of lysine from meso-2,6-diaminoheptanedioate; bifunctional aspartate kinase/diaminopimelate decarboxylase protein 1148203..1150797 Stenotrophomonas maltophilia R551-3 6478366 YP_002027400.1 CDS Smal_1012 NC_011071.1 1150877 1152229 D KEGG: xom:XOO_1319 hypothetical protein; hypothetical protein 1150877..1152229 Stenotrophomonas maltophilia R551-3 6478367 YP_002027401.1 CDS murD NC_011071.1 1152210 1153619 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1152210..1153619 Stenotrophomonas maltophilia R551-3 6478368 YP_002027402.1 CDS Smal_1014 NC_011071.1 1153743 1154339 R KEGG: bur:Bcep18194_C6971 hypothetical protein; hypothetical protein complement(1153743..1154339) Stenotrophomonas maltophilia R551-3 6478369 YP_002027403.1 CDS Smal_1015 NC_011071.1 1154470 1155255 D PFAM: dienelactone hydrolase; KEGG: xcv:XCV3051 putative carboxymethylenebutenolidase; dienelactone hydrolase 1154470..1155255 Stenotrophomonas maltophilia R551-3 6478370 YP_002027404.1 CDS Smal_1016 NC_011071.1 1155388 1156386 R PFAM: Polyprenyl synthetase; KEGG: xcb:XC_1377 octaprenyl-diphosphate synthase; polyprenyl synthetase complement(1155388..1156386) Stenotrophomonas maltophilia R551-3 6478371 YP_002027405.1 CDS Smal_1017 NC_011071.1 1156601 1158214 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_1642 alpha-glucosidase; alpha amylase catalytic protein 1156601..1158214 Stenotrophomonas maltophilia R551-3 6478444 YP_002027406.1 CDS Smal_1018 NC_011071.1 1158447 1161203 R TIGRFAM: outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1644 TonB-dependent receptor; outer membrane insertion C-terminal signal complement(1158447..1161203) Stenotrophomonas maltophilia R551-3 6478445 YP_002027407.1 CDS Smal_1019 NC_011071.1 1161455 1163506 R KEGG: xcb:XC_1645 alpha-glucosidase; alpha-glucosidase complement(1161455..1163506) Stenotrophomonas maltophilia R551-3 6478446 YP_002027408.1 CDS Smal_1020 NC_011071.1 1163744 1165936 D KEGG: xac:XAC2598 hypothetical protein; hypothetical protein 1163744..1165936 Stenotrophomonas maltophilia R551-3 6478447 YP_002027409.1 CDS Smal_1021 NC_011071.1 1165933 1167420 D PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2798 glycoside-pentoside-hexuronide:cation symporter family protein; major facilitator superfamily protein 1165933..1167420 Stenotrophomonas maltophilia R551-3 6478448 YP_002027410.1 CDS Smal_1022 NC_011071.1 1167420 1169135 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_1648 cyclomaltodextrin glucanotransferase (CGTase); alpha amylase catalytic protein 1167420..1169135 Stenotrophomonas maltophilia R551-3 6478449 YP_002027411.1 CDS Smal_1023 NC_011071.1 1169258 1169644 D KEGG: cms:CMS_2225 hypothetical protein; hypothetical protein 1169258..1169644 Stenotrophomonas maltophilia R551-3 6478450 YP_002027412.1 CDS Smal_1024 NC_011071.1 1169758 1170216 D PFAM: GCN5-related N-acetyltransferase; KEGG: shl:Shal_0014 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1169758..1170216 Stenotrophomonas maltophilia R551-3 6478451 YP_002027413.1 CDS Smal_1025 NC_011071.1 1170267 1170641 R hypothetical protein complement(1170267..1170641) Stenotrophomonas maltophilia R551-3 6478452 YP_002027414.1 CDS Smal_1026 NC_011071.1 1170652 1171551 R hypothetical protein complement(1170652..1171551) Stenotrophomonas maltophilia R551-3 6478453 YP_002027415.1 CDS Smal_1027 NC_011071.1 1171800 1172087 D hypothetical protein 1171800..1172087 Stenotrophomonas maltophilia R551-3 6478454 YP_002027416.1 CDS Smal_1028 NC_011071.1 1172164 1175748 R KEGG: xac:XAC1388 hypothetical protein; hypothetical protein complement(1172164..1175748) Stenotrophomonas maltophilia R551-3 6478455 YP_002027417.1 CDS Smal_1029 NC_011071.1 1175761 1176663 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1389 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1175761..1176663) Stenotrophomonas maltophilia R551-3 6478456 YP_002027418.1 CDS Smal_1030 NC_011071.1 1176937 1178433 D KEGG: xcb:XC_2577 hypothetical protein; PFAM: KaiA binding; SMART: AAA ATPase; Non-specific serine/threonine protein kinase 1176937..1178433 Stenotrophomonas maltophilia R551-3 6478457 YP_002027419.1 CDS Smal_1031 NC_011071.1 1178423 1180492 D KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1178423..1180492 Stenotrophomonas maltophilia R551-3 6478458 YP_002027420.1 CDS Smal_1032 NC_011071.1 1180589 1181719 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_1649 maltose transport gene repressor; LacI family transcriptional regulator complement(1180589..1181719) Stenotrophomonas maltophilia R551-3 6478459 YP_002027421.1 CDS Smal_1033 NC_011071.1 1181914 1182489 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1181914..1182489 Stenotrophomonas maltophilia R551-3 6478460 YP_002027422.1 CDS Smal_1034 NC_011071.1 1182895 1186275 D PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: abo:ABO_1832 type I restriction-modification system, R subunit; type III restriction protein res subunit 1182895..1186275 Stenotrophomonas maltophilia R551-3 6478461 YP_002027423.1 CDS Smal_1035 NC_011071.1 1186284 1188122 D PFAM: protein of unknown function DUF195; KEGG: pha:PSHAb0004 DNA recombination protein RmuC; hypothetical protein 1186284..1188122 Stenotrophomonas maltophilia R551-3 6478462 YP_002027424.1 CDS Smal_1036 NC_011071.1 1188134 1189717 D PFAM: N-6 DNA methylase; KEGG: abo:ABO_1830 type I restriction-modification system, M subunit; N-6 DNA methylase 1188134..1189717 Stenotrophomonas maltophilia R551-3 6478463 YP_002027425.1 CDS Smal_1037 NC_011071.1 1189714 1190808 D PFAM: restriction modification system DNA specificity domain; KEGG: rba:RB11619 type I restriction modification enzyme, S subunit; restriction modification system DNA specificity domain 1189714..1190808 Stenotrophomonas maltophilia R551-3 6478464 YP_002027426.1 CDS Smal_1038 NC_011071.1 1191309 1191719 D hypothetical protein 1191309..1191719 Stenotrophomonas maltophilia R551-3 6478465 YP_002027427.1 CDS Smal_1039 NC_011071.1 1191783 1192511 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bur:Bcep18194_B0662 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1191783..1192511) Stenotrophomonas maltophilia R551-3 6478466 YP_002027428.1 CDS Smal_1040 NC_011071.1 1192605 1193504 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bid:Bind_1829 transcriptional regulator, AraC family; AraC family transcriptional regulator 1192605..1193504 Stenotrophomonas maltophilia R551-3 6478467 YP_002027429.1 CDS Smal_1041 NC_011071.1 1193653 1194549 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pat:Patl_2687 twin-arginine translocation pathway signal; Xylose isomerase domain-containing protein 1193653..1194549 Stenotrophomonas maltophilia R551-3 6478468 YP_002027430.1 CDS Smal_1042 NC_011071.1 1194577 1196262 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: atc:AGR_L_980 hypothetical protein; glucose-methanol-choline oxidoreductase 1194577..1196262 Stenotrophomonas maltophilia R551-3 6478469 YP_002027431.1 CDS Smal_1043 NC_011071.1 1196262 1196843 D KEGG: pat:Patl_2685 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 1196262..1196843 Stenotrophomonas maltophilia R551-3 6478470 YP_002027432.1 CDS Smal_1044 NC_011071.1 1196858 1197601 D PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_2684 protein of unknown function DUF1080; hypothetical protein 1196858..1197601 Stenotrophomonas maltophilia R551-3 6478471 YP_002027433.1 CDS Smal_1045 NC_011071.1 1197632 1197928 R PFAM: cytochrome c class I; KEGG: swi:Swit_1900 quinoprotein glucose dehydrogenase; cytochrome c class I complement(1197632..1197928) Stenotrophomonas maltophilia R551-3 6478472 YP_002027434.1 CDS Smal_1046 NC_011071.1 1197947 1198810 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_982 hypothetical protein; Xylose isomerase domain-containing protein complement(1197947..1198810) Stenotrophomonas maltophilia R551-3 6478473 YP_002027435.1 CDS Smal_1047 NC_011071.1 1198831 1199955 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_1886 oxidoreductase family, NAD-binding Rossmann fold domain protein; oxidoreductase domain-containing protein complement(1198831..1199955) Stenotrophomonas maltophilia R551-3 6478474 YP_002027436.1 CDS Smal_1048 NC_011071.1 1199968 1201185 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: csa:Csal_0765 nucleoside:H+ symporter; nucleoside:H symporter complement(1199968..1201185) Stenotrophomonas maltophilia R551-3 6478475 YP_002027437.1 CDS Smal_1049 NC_011071.1 1201213 1202265 R PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: cak:Caul_4609 xylose isomerase domain protein TIM barrel; Xylose isomerase domain-containing protein complement(1201213..1202265) Stenotrophomonas maltophilia R551-3 6478476 YP_002027438.1 CDS Smal_1050 NC_011071.1 1202361 1203368 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ccr:CC_1627 transcriptional regulator, LacI family; LacI family transcriptional regulator 1202361..1203368 Stenotrophomonas maltophilia R551-3 6478477 YP_002027439.1 CDS Smal_1051 NC_011071.1 1203522 1204574 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ent:Ent638_2010 diguanylate cyclase; diguanylate cyclase 1203522..1204574 Stenotrophomonas maltophilia R551-3 6478478 YP_002027440.1 CDS Smal_1052 NC_011071.1 1204611 1205525 R PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: pfo:PflO1_2408 transcriptional regulator, MarR family; MarR family transcriptional regulator with acetyltransferase activity complement(1204611..1205525) Stenotrophomonas maltophilia R551-3 6478479 YP_002027441.1 CDS Smal_1053 NC_011071.1 1205585 1206517 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:RL0361 putative LysR family transcriptional regulator; LysR family transcriptional regulator complement(1205585..1206517) Stenotrophomonas maltophilia R551-3 6478480 YP_002027442.1 CDS Smal_1054 NC_011071.1 1206626 1207474 D KEGG: shw:Sputw3181_3788 isocitrate lyase family protein; isocitrate lyase family protein 1206626..1207474 Stenotrophomonas maltophilia R551-3 6478481 YP_002027443.1 CDS Smal_1055 NC_011071.1 1207600 1208625 D KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein 1207600..1208625 Stenotrophomonas maltophilia R551-3 6478482 YP_002027444.1 CDS Smal_1056 NC_011071.1 1208788 1210530 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: reh:H16_B1591 putative GGDEF family protein; diguanylate cyclase 1208788..1210530 Stenotrophomonas maltophilia R551-3 6478483 YP_002027445.1 CDS Smal_1057 NC_011071.1 1210602 1211039 D hypothetical protein 1210602..1211039 Stenotrophomonas maltophilia R551-3 6478484 YP_002027446.1 CDS Smal_1058 NC_011071.1 1211054 1211554 D KEGG: atc:AGR_C_4417 hypothetical protein; hypothetical protein 1211054..1211554 Stenotrophomonas maltophilia R551-3 6478485 YP_002027447.1 CDS Smal_1059 NC_011071.1 1211558 1212532 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7340 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1211558..1212532) Stenotrophomonas maltophilia R551-3 6478486 YP_002027448.1 CDS Smal_1060 NC_011071.1 1212671 1213597 D KEGG: reu:Reut_A1824 conserved hypothetical protein YcjY; hypothetical protein 1212671..1213597 Stenotrophomonas maltophilia R551-3 6478487 YP_002027449.1 CDS Smal_1061 NC_011071.1 1213640 1215034 R KEGG: xcv:XCV2950 hypothetical protein; hypothetical protein complement(1213640..1215034) Stenotrophomonas maltophilia R551-3 6478488 YP_002027450.1 CDS Smal_1062 NC_011071.1 1215059 1215370 R PFAM: regulatory protein ArsR; KEGG: mex:Mext_0720 regulatory protein ArsR; ArsR family transcriptional regulator complement(1215059..1215370) Stenotrophomonas maltophilia R551-3 6478489 YP_002027451.1 CDS Smal_1063 NC_011071.1 1215499 1216080 D KEGG: mpt:Mpe_A2322 hypothetical protein; hypothetical protein 1215499..1216080 Stenotrophomonas maltophilia R551-3 6478490 YP_002027452.1 CDS Smal_1064 NC_011071.1 1216291 1216758 D KEGG: eli:ELI_14445 hypothetical protein; hypothetical protein 1216291..1216758 Stenotrophomonas maltophilia R551-3 6478491 YP_002027453.1 CDS Smal_1065 NC_011071.1 1216758 1216982 D SMART: helix-turn-helix domain protein; KEGG: nar:Saro_0028 transcriptional regulator, XRE family; XRE family transcriptional regulator 1216758..1216982 Stenotrophomonas maltophilia R551-3 6478492 YP_002027454.1 CDS Smal_1066 NC_011071.1 1217026 1218567 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: rru:Rru_A2870 integral membrane protein TerC; integral membrane protein TerC 1217026..1218567 Stenotrophomonas maltophilia R551-3 6478493 YP_002027455.1 CDS Smal_1067 NC_011071.1 1218764 1219825 D PFAM: metallophosphoesterase; KEGG: psp:PSPPH_2766 Ser/Thr protein phosphatase family protein; metallophosphoesterase 1218764..1219825 Stenotrophomonas maltophilia R551-3 6478494 YP_002027456.1 CDS Smal_1068 NC_011071.1 1219898 1220308 D hypothetical protein 1219898..1220308 Stenotrophomonas maltophilia R551-3 6478495 YP_002027457.1 CDS Smal_1069 NC_011071.1 1220406 1221419 D KEGG: aha:AHA_1467 hypothetical protein; hypothetical protein 1220406..1221419 Stenotrophomonas maltophilia R551-3 6478496 YP_002027458.1 CDS Smal_1070 NC_011071.1 1221497 1222756 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_0464 general substrate transporter; major facilitator superfamily protein 1221497..1222756 Stenotrophomonas maltophilia R551-3 6478497 YP_002027459.1 CDS Smal_1071 NC_011071.1 1222761 1223708 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sme:SMc03175 putative nucleoside hydrolase protein; inosine/uridine-preferring nucleoside hydrolase complement(1222761..1223708) Stenotrophomonas maltophilia R551-3 6478498 YP_002027460.1 CDS Smal_1072 NC_011071.1 1223830 1224186 D KEGG: mdo:100032204 hypothetical protein LOC100032204; hypothetical protein 1223830..1224186 Stenotrophomonas maltophilia R551-3 6478499 YP_002027461.1 CDS Smal_1073 NC_011071.1 1224258 1224977 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: xcb:XC_0580 transcriptional regulator MdcY family; GntR family transcriptional regulator complement(1224258..1224977) Stenotrophomonas maltophilia R551-3 6478500 YP_002027462.1 CDS Smal_1074 NC_011071.1 1225084 1226451 R PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: xcb:XC_0579 dicarboxylate carrier protein; dicarboxylate carrier MatC domain-containing protein complement(1225084..1226451) Stenotrophomonas maltophilia R551-3 6478501 YP_002027463.1 CDS Smal_1075 NC_011071.1 1226556 1227476 R TIGRFAM: malonate decarboxylase, epsilon subunit; KEGG: xcb:XC_0578 acyl-carrier-protein S-malonyltransferase; malonate decarboxylase subunit epsilon complement(1226556..1227476) Stenotrophomonas maltophilia R551-3 6478502 YP_002027464.1 CDS Smal_1076 NC_011071.1 1227473 1228330 R KEGG: xcb:XC_0577 CitG protein; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase MdcB; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase MdcB complement(1227473..1228330) Stenotrophomonas maltophilia R551-3 6478503 YP_002027465.1 CDS Smal_1077 NC_011071.1 1228327 1228968 R catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase complement(1228327..1228968) Stenotrophomonas maltophilia R551-3 6478504 YP_002027466.1 CDS Smal_1078 NC_011071.1 1228961 1229671 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: xcb:XC_0575 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma complement(1228961..1229671) Stenotrophomonas maltophilia R551-3 6478505 YP_002027467.1 CDS Smal_1079 NC_011071.1 1229668 1230576 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(1229668..1230576) Stenotrophomonas maltophilia R551-3 6478506 YP_002027468.1 CDS Smal_1080 NC_011071.1 1230573 1230893 R acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta complement(1230573..1230893) Stenotrophomonas maltophilia R551-3 6478507 YP_002027469.1 CDS Smal_1081 NC_011071.1 1230904 1232547 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: xcb:XC_0572 alpha subunit of malonate decarboxylase; malonate decarboxylase subunit alpha complement(1230904..1232547) Stenotrophomonas maltophilia R551-3 6478508 YP_002027470.1 CDS Smal_1082 NC_011071.1 1232738 1234930 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV0159 TonB-dependent outer membrane receptor; TonB-dependent siderophore receptor complement(1232738..1234930) Stenotrophomonas maltophilia R551-3 6478509 YP_002027471.1 CDS Smal_1083 NC_011071.1 1235229 1236929 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(1235229..1236929) Stenotrophomonas maltophilia R551-3 6478510 YP_002027472.1 CDS Smal_1084 NC_011071.1 1237125 1237571 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppg:PputGB1_2958 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1237125..1237571) Stenotrophomonas maltophilia R551-3 6478511 YP_002027473.1 CDS Smal_1085 NC_011071.1 1237755 1238660 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1237755..1238660) Stenotrophomonas maltophilia R551-3 6478512 YP_002027474.1 CDS Smal_1086 NC_011071.1 1238798 1239433 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB0235 probable transporter; lysine exporter protein LysE/YggA 1238798..1239433 Stenotrophomonas maltophilia R551-3 6478513 YP_002027475.1 CDS Smal_1087 NC_011071.1 1239601 1241553 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xac:XAC1200 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1239601..1241553 Stenotrophomonas maltophilia R551-3 6478514 YP_002027476.1 CDS Smal_1088 NC_011071.1 1241609 1243363 R TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: sdn:Sden_0945 amino acid/peptide transporter; amino acid/peptide transporter complement(1241609..1243363) Stenotrophomonas maltophilia R551-3 6478515 YP_002027477.1 CDS Smal_1089 NC_011071.1 1243453 1244601 R PFAM: protein of unknown function DUF1624; KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein complement(1243453..1244601) Stenotrophomonas maltophilia R551-3 6478516 YP_002027478.1 CDS Smal_1090 NC_011071.1 1244804 1246768 D TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter, OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: xcv:XCV1230 oligopeptide transporter family protein; OPT family oligopeptide transporter 1244804..1246768 Stenotrophomonas maltophilia R551-3 6474941 YP_002027479.1 CDS Smal_1091 NC_011071.1 1247023 1249101 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: xac:XAC1204 alanyl dipeptidyl peptidase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 1247023..1249101 Stenotrophomonas maltophilia R551-3 6474942 YP_002027480.1 CDS Smal_1092 NC_011071.1 1249243 1250487 D PFAM: protein of unknown function DUF819; KEGG: xcv:XCV3040 hypothetical protein; hypothetical protein 1249243..1250487 Stenotrophomonas maltophilia R551-3 6474943 YP_002027481.1 CDS Smal_1093 NC_011071.1 1250575 1251063 R KEGG: xcb:XC_3124 hypothetical protein; hypothetical protein complement(1250575..1251063) Stenotrophomonas maltophilia R551-3 6474944 YP_002027482.1 CDS minE NC_011071.1 1251101 1251361 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1251101..1251361) Stenotrophomonas maltophilia R551-3 6474945 YP_002027483.1 CDS Smal_1095 NC_011071.1 1251364 1252173 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xom:XOO_3337 septum site-determining protein; septum site-determining protein MinD complement(1251364..1252173) Stenotrophomonas maltophilia R551-3 6474946 YP_002027484.1 CDS minC NC_011071.1 1252209 1252997 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1252209..1252997) Stenotrophomonas maltophilia R551-3 6474947 YP_002027485.1 CDS Smal_1097 NC_011071.1 1253000 1253596 R PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC1227 hypothetical protein; N-acetyltransferase GCN5 complement(1253000..1253596) Stenotrophomonas maltophilia R551-3 6474948 YP_002027486.1 CDS Smal_1098 NC_011071.1 1253747 1254943 D PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcb:XC_3118 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 1253747..1254943 Stenotrophomonas maltophilia R551-3 6474949 YP_002027487.1 CDS Smal_1099 NC_011071.1 1254943 1255584 D PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: xom:XOO_3333 two-component system regulatory protein; two component LuxR family transcriptional regulator 1254943..1255584 Stenotrophomonas maltophilia R551-3 6474950 YP_002027488.1 CDS Smal_1100 NC_011071.1 1255819 1256892 D KEGG: xac:XAC1230 hypothetical protein; hypothetical protein 1255819..1256892 Stenotrophomonas maltophilia R551-3 6474951 YP_002027489.1 CDS Smal_1101 NC_011071.1 1256998 1257369 D PFAM: protein of unknown function DUF423; KEGG: xcb:XC_3113 hypothetical protein; hypothetical protein 1256998..1257369 Stenotrophomonas maltophilia R551-3 6474952 YP_002027490.1 CDS Smal_1102 NC_011071.1 1257764 1258573 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: xoo:XOO3523 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(1257764..1258573) Stenotrophomonas maltophilia R551-3 6474953 YP_002027491.1 CDS Smal_1103 NC_011071.1 1258583 1259176 R KEGG: cyt:cce_3711 hypothetical protein; hypothetical protein complement(1258583..1259176) Stenotrophomonas maltophilia R551-3 6474954 YP_002027492.1 CDS Smal_1104 NC_011071.1 1259180 1259359 R KEGG: xcb:XC_3110 hypothetical protein; hypothetical protein complement(1259180..1259359) Stenotrophomonas maltophilia R551-3 6474955 YP_002027493.1 CDS Smal_1105 NC_011071.1 1259356 1259535 R KEGG: xcv:XCV1266 hypothetical protein; hypothetical protein complement(1259356..1259535) Stenotrophomonas maltophilia R551-3 6474956 YP_002027494.1 CDS Smal_1106 NC_011071.1 1259581 1260462 R PFAM: band 7 protein; KEGG: xac:XAC1236 hypothetical protein; hypothetical protein complement(1259581..1260462) Stenotrophomonas maltophilia R551-3 6474957 YP_002027495.1 CDS purT NC_011071.1 1260600 1261787 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1260600..1261787 Stenotrophomonas maltophilia R551-3 6474958 YP_002027496.1 CDS Smal_1108 NC_011071.1 1261898 1263103 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_3102 hypothetical protein; endonuclease/exonuclease/phosphatase complement(1261898..1263103) Stenotrophomonas maltophilia R551-3 6474959 YP_002027497.1 CDS Smal_1109 NC_011071.1 1263142 1263897 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1263142..1263897) Stenotrophomonas maltophilia R551-3 6474960 YP_002027498.1 CDS Smal_1110 NC_011071.1 1264054 1264617 D KEGG: xcb:XC_3100 hypothetical protein; hypothetical protein 1264054..1264617 Stenotrophomonas maltophilia R551-3 6474961 YP_002027499.1 CDS Smal_1111 NC_011071.1 1264669 1265886 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcv:XCV1276 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 subunit complement(1264669..1265886) Stenotrophomonas maltophilia R551-3 6474962 YP_002027500.1 CDS Smal_1112 NC_011071.1 1266094 1266603 R KEGG: xom:XOO_1500 pathogenicity-related protein; pathogenicity-like protein complement(1266094..1266603) Stenotrophomonas maltophilia R551-3 6474963 YP_002027501.1 CDS Smal_1113 NC_011071.1 1266608 1267528 R KEGG: xac:XAC1243 acyl-CoA thiolesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(1266608..1267528) Stenotrophomonas maltophilia R551-3 6474964 YP_002027502.1 CDS Smal_1114 NC_011071.1 1267656 1268432 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xoo:XOO1616 hypothetical protein; enoyl-CoA hydratase/isomerase complement(1267656..1268432) Stenotrophomonas maltophilia R551-3 6474965 YP_002027503.1 CDS Smal_1115 NC_011071.1 1268467 1268913 D PFAM: protein of unknown function DUF461; KEGG: xcv:XCV1281 hypothetical protein; hypothetical protein 1268467..1268913 Stenotrophomonas maltophilia R551-3 6474966 YP_002027504.1 CDS Smal_1116 NC_011071.1 1269022 1269747 R KEGG: dac:Daci_4474 hypothetical protein; hypothetical protein complement(1269022..1269747) Stenotrophomonas maltophilia R551-3 6474967 YP_002027505.1 CDS Smal_1117 NC_011071.1 1269833 1270240 R PFAM: thioesterase superfamily protein; KEGG: xcb:XC_3095 hypothetical protein; thioesterase superfamily protein complement(1269833..1270240) Stenotrophomonas maltophilia R551-3 6474968 YP_002027506.1 CDS uvrA NC_011071.1 1270240 1273230 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1270240..1273230) Stenotrophomonas maltophilia R551-3 6474969 YP_002027507.1 CDS rplU NC_011071.1 1273581 1273898 D PFAM: ribosomal protein L21; KEGG: xcb:XC_3093 50S ribosomal protein L21; 50S ribosomal protein L21 1273581..1273898 Stenotrophomonas maltophilia R551-3 6474970 YP_002027508.1 CDS rpmA NC_011071.1 1273910 1274173 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1273910..1274173 Stenotrophomonas maltophilia R551-3 6474971 YP_002027509.1 CDS obgE NC_011071.1 1274390 1275442 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1274390..1275442 Stenotrophomonas maltophilia R551-3 6474972 YP_002027510.1 CDS rpsT NC_011071.1 1275665 1275934 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1275665..1275934) Stenotrophomonas maltophilia R551-3 6474973 YP_002027511.1 CDS Smal_1123 NC_011071.1 1276052 1277656 D TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: xom:XOO_1510 virulence factor; integral membrane protein MviN 1276052..1277656 Stenotrophomonas maltophilia R551-3 6474974 YP_002027512.1 CDS Smal_1124 NC_011071.1 1277732 1278679 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1277732..1278679 Stenotrophomonas maltophilia R551-3 6474975 YP_002027513.1 CDS ileS NC_011071.1 1278676 1281507 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1278676..1281507 Stenotrophomonas maltophilia R551-3 6474976 YP_002027514.1 CDS lspA NC_011071.1 1281507 1282031 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1281507..1282031 Stenotrophomonas maltophilia R551-3 6474977 YP_002027515.1 CDS ispH NC_011071.1 1282059 1283009 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1282059..1283009 Stenotrophomonas maltophilia R551-3 6474978 YP_002027516.1 CDS Smal_1128 NC_011071.1 1283204 1285087 D PFAM: peptidase M61 domain protein; KEGG: xcv:XCV1311 putative glycyl aminopeptidase precursor; peptidase M61 domain-containing protein 1283204..1285087 Stenotrophomonas maltophilia R551-3 6474979 YP_002027517.1 CDS Smal_1129 NC_011071.1 1285084 1285749 D PFAM: YhhN family protein; KEGG: oan:Oant_1326 YhhN family protein; hypothetical protein 1285084..1285749 Stenotrophomonas maltophilia R551-3 6474980 YP_002027518.1 CDS Smal_1130 NC_011071.1 1285834 1286541 R KEGG: fjo:Fjoh_3948 hypothetical protein; hypothetical protein complement(1285834..1286541) Stenotrophomonas maltophilia R551-3 6474981 YP_002027519.1 CDS Smal_1131 NC_011071.1 1286538 1287494 R KEGG: fjo:Fjoh_3949 hypothetical protein; hypothetical protein complement(1286538..1287494) Stenotrophomonas maltophilia R551-3 6474982 YP_002027520.1 CDS Smal_1132 NC_011071.1 1287544 1290336 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbl:Sbal_0680 TonB-dependent receptor; TonB-dependent receptor plug complement(1287544..1290336) Stenotrophomonas maltophilia R551-3 6474983 YP_002027521.1 CDS Smal_1133 NC_011071.1 1290349 1291317 R PFAM: FecR protein; KEGG: psp:PSPPH_2117 FecR protein superfamily; anti-FecI sigma factor FecR complement(1290349..1291317) Stenotrophomonas maltophilia R551-3 6474984 YP_002027522.1 CDS Smal_1134 NC_011071.1 1291314 1291841 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4331 sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(1291314..1291841) Stenotrophomonas maltophilia R551-3 6474985 YP_002027523.1 CDS Smal_1135 NC_011071.1 1292078 1294960 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: bpa:BPP0822 autotransporter; outer membrane autotransporter barrel domain-containing protein 1292078..1294960 Stenotrophomonas maltophilia R551-3 6474986 YP_002027524.1 CDS Smal_1136 NC_011071.1 1295059 1296063 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: csa:Csal_3144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1295059..1296063 Stenotrophomonas maltophilia R551-3 6474987 YP_002027525.1 CDS Smal_1137 NC_011071.1 1296385 1296819 D KEGG: ypg:YpAngola_0066 hypothetical protein; hypothetical protein 1296385..1296819 Stenotrophomonas maltophilia R551-3 6474989 YP_002027526.1 CDS Smal_1138 NC_011071.1 1296938 1297273 R hypothetical protein complement(1296938..1297273) Stenotrophomonas maltophilia R551-3 6474990 YP_002027527.1 CDS Smal_1139 NC_011071.1 1297287 1297919 R KEGG: bid:Bind_2941 hypothetical protein; hypothetical protein complement(1297287..1297919) Stenotrophomonas maltophilia R551-3 6474991 YP_002027528.1 CDS Smal_1140 NC_011071.1 1298271 1299326 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: xac:XAC1258 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 1298271..1299326 Stenotrophomonas maltophilia R551-3 6474992 YP_002027529.1 CDS Smal_1141 NC_011071.1 1299329 1301326 D KEGG: xac:XAC1259 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 1299329..1301326 Stenotrophomonas maltophilia R551-3 6474993 YP_002027530.1 CDS Smal_1142 NC_011071.1 1301323 1301961 D TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: xoo:XOO1631 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 1301323..1301961 Stenotrophomonas maltophilia R551-3 6474994 YP_002027531.1 CDS Smal_1143 NC_011071.1 1301961 1302302 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: xom:XOO_1518 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 1301961..1302302 Stenotrophomonas maltophilia R551-3 6474995 YP_002027532.1 CDS Smal_1144 NC_011071.1 1302420 1304480 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pap:PSPA7_3579 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(1302420..1304480) Stenotrophomonas maltophilia R551-3 6474996 YP_002027533.1 CDS Smal_1145 NC_011071.1 1304630 1306006 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1304630..1306006 Stenotrophomonas maltophilia R551-3 6474997 YP_002027534.1 CDS Smal_1146 NC_011071.1 1306196 1308052 D KEGG: xom:XOO_1267 Hsp90xo protein; Hsp90xo protein 1306196..1308052 Stenotrophomonas maltophilia R551-3 6474998 YP_002027535.1 CDS Smal_1147 NC_011071.1 1308101 1310407 D KEGG: xom:XOO_1268 hypothetical protein; hypothetical protein 1308101..1310407 Stenotrophomonas maltophilia R551-3 6474999 YP_002027536.1 CDS Smal_1148 NC_011071.1 1310511 1310975 D KEGG: psp:PSPPH_2865 hypothetical protein; hypothetical protein 1310511..1310975 Stenotrophomonas maltophilia R551-3 6475000 YP_002027537.1 CDS Smal_1149 NC_011071.1 1311066 1311860 R PFAM: cytochrome c assembly protein; KEGG: xcb:XC_3049 hypothetical protein; cytochrome c assembly protein complement(1311066..1311860) Stenotrophomonas maltophilia R551-3 6475001 YP_002027538.1 CDS Smal_1150 NC_011071.1 1311983 1313359 D KEGG: xcb:XC_3048 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1311983..1313359 Stenotrophomonas maltophilia R551-3 6475002 YP_002027539.1 CDS Smal_1151 NC_011071.1 1313451 1314527 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: xcb:XC_3045 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 1313451..1314527 Stenotrophomonas maltophilia R551-3 6475003 YP_002027540.1 CDS Smal_1152 NC_011071.1 1314524 1315336 D KEGG: xfa:XF0075 hypothetical protein; hypothetical protein 1314524..1315336 Stenotrophomonas maltophilia R551-3 6475004 YP_002027541.1 CDS rpsP NC_011071.1 1315438 1315698 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1315438..1315698 Stenotrophomonas maltophilia R551-3 6475005 YP_002027542.1 CDS rimM NC_011071.1 1315743 1316255 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1315743..1316255 Stenotrophomonas maltophilia R551-3 6475006 YP_002027543.1 CDS trmD NC_011071.1 1316264 1317022 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1316264..1317022 Stenotrophomonas maltophilia R551-3 6475007 YP_002027544.1 CDS rplS NC_011071.1 1317177 1317578 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1317177..1317578 Stenotrophomonas maltophilia R551-3 6475008 YP_002027545.1 CDS Smal_1157 NC_011071.1 1317661 1318041 D KEGG: esa:ESA_02980 hypothetical protein; hypothetical protein 1317661..1318041 Stenotrophomonas maltophilia R551-3 6475009 YP_002027546.1 CDS Smal_1158 NC_011071.1 1318121 1318555 D PFAM: Domain of unknown function DUF1801; KEGG: mlo:mll2250 hypothetical protein; hypothetical protein 1318121..1318555 Stenotrophomonas maltophilia R551-3 6475010 YP_002027547.1 CDS Smal_1159 NC_011071.1 1318594 1319001 D PFAM: Domain of unknown function DUF1801; KEGG: pde:Pden_0329 hypothetical protein; hypothetical protein 1318594..1319001 Stenotrophomonas maltophilia R551-3 6475011 YP_002027548.1 CDS Smal_1160 NC_011071.1 1319161 1320621 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: xcb:XC_3039 hypothetical protein; MATE efflux family protein complement(1319161..1320621) Stenotrophomonas maltophilia R551-3 6475012 YP_002027549.1 CDS Smal_1161 NC_011071.1 1320684 1320923 D hypothetical protein 1320684..1320923 Stenotrophomonas maltophilia R551-3 6475013 YP_002027550.1 CDS Smal_1162 NC_011071.1 1320933 1321340 D PFAM: RNA-binding S4 domain protein; KEGG: xcb:XC_3038 heat shock protein 15 homolog; RNA-binding S4 domain-containing protein 1320933..1321340 Stenotrophomonas maltophilia R551-3 6475014 YP_002027551.1 CDS Smal_1163 NC_011071.1 1321454 1322641 D PFAM: glycoside hydrolase family 5; KEGG: pen:PSEEN1388 glycosidase, family 5; glycoside hydrolase family protein 1321454..1322641 Stenotrophomonas maltophilia R551-3 6475015 YP_002027552.1 CDS Smal_1164 NC_011071.1 1322714 1323316 R KEGG: bpt:Bpet2936 hypothetical protein; hypothetical protein complement(1322714..1323316) Stenotrophomonas maltophilia R551-3 6475016 YP_002027553.1 CDS Smal_1165 NC_011071.1 1323425 1325068 R PFAM: Catalase domain protein; KEGG: swi:Swit_0269 catalase; catalase complement(1323425..1325068) Stenotrophomonas maltophilia R551-3 6475017 YP_002027554.1 CDS Smal_1166 NC_011071.1 1325263 1327854 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1325263..1327854) Stenotrophomonas maltophilia R551-3 6475018 YP_002027555.1 CDS Smal_1167 NC_011071.1 1328060 1328518 D KEGG: bpm:BURPS1710b_0566 hypothetical protein; hypothetical protein 1328060..1328518 Stenotrophomonas maltophilia R551-3 6475019 YP_002027556.1 CDS Smal_1168 NC_011071.1 1328563 1328955 R KEGG: rha:RHA1_ro03362 possible barnase inhibitor; putative barnase inhibitor complement(1328563..1328955) Stenotrophomonas maltophilia R551-3 6475020 YP_002027557.1 CDS Smal_1169 NC_011071.1 1329236 1331458 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_2304 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1329236..1331458 Stenotrophomonas maltophilia R551-3 6475021 YP_002027558.1 CDS Smal_1170 NC_011071.1 1331632 1331994 D PFAM: 17 kDa surface antigen; KEGG: xcb:XC_0723 hypothetical protein; 17 kDa surface antigen 1331632..1331994 Stenotrophomonas maltophilia R551-3 6475022 YP_002027559.1 CDS Smal_1171 NC_011071.1 1332114 1333241 R KEGG: aci:ACIAD2651 hypothetical protein; hypothetical protein complement(1332114..1333241) Stenotrophomonas maltophilia R551-3 6475023 YP_002027560.1 CDS Smal_1172 NC_011071.1 1333238 1334425 R KEGG: dac:Daci_4570 ABC-2 type transporter; ABC-2 type transporter complement(1333238..1334425) Stenotrophomonas maltophilia R551-3 6475024 YP_002027561.1 CDS Smal_1173 NC_011071.1 1334410 1335423 R PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_4571 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1334410..1335423) Stenotrophomonas maltophilia R551-3 6475025 YP_002027562.1 CDS Smal_1174 NC_011071.1 1335416 1336789 R PFAM: outer membrane efflux protein; KEGG: ppr:PBPRB0513 hypothetical protein; outer membrane efflux protein complement(1335416..1336789) Stenotrophomonas maltophilia R551-3 6475026 YP_002027563.1 CDS Smal_1175 NC_011071.1 1336895 1337788 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1336895..1337788) Stenotrophomonas maltophilia R551-3 6475027 YP_002027564.1 CDS Smal_1176 NC_011071.1 1337896 1338516 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xac:XAC3133 membrane transport protein; lysine exporter protein LysE/YggA 1337896..1338516 Stenotrophomonas maltophilia R551-3 6475028 YP_002027565.1 CDS Smal_1177 NC_011071.1 1338692 1339360 D KEGG: spe:Spro_2143 hypothetical protein; hypothetical protein 1338692..1339360 Stenotrophomonas maltophilia R551-3 6475029 YP_002027566.1 CDS Smal_1178 NC_011071.1 1339357 1340145 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: xac:XAC3782 methionine aminopeptidase; methionine aminopeptidase complement(1339357..1340145) Stenotrophomonas maltophilia R551-3 6475030 YP_002027567.1 CDS Smal_1179 NC_011071.1 1340150 1340362 R KEGG: xcv:XCV3895 hypothetical protein; hypothetical protein complement(1340150..1340362) Stenotrophomonas maltophilia R551-3 6475031 YP_002027568.1 CDS Smal_1180 NC_011071.1 1340431 1340790 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nmu:Nmul_A2014 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1340431..1340790) Stenotrophomonas maltophilia R551-3 6475032 YP_002027569.1 CDS Smal_1181 NC_011071.1 1340998 1341882 R KEGG: dac:Daci_0135 hypothetical protein; hypothetical protein complement(1340998..1341882) Stenotrophomonas maltophilia R551-3 6475033 YP_002027570.1 CDS Smal_1182 NC_011071.1 1341886 1342950 R KEGG: aav:Aave_4332 hypothetical protein; hypothetical protein complement(1341886..1342950) Stenotrophomonas maltophilia R551-3 6475034 YP_002027571.1 CDS Smal_1183 NC_011071.1 1342979 1344379 R PFAM: aminotransferase class-III; KEGG: dac:Daci_0137 aminotransferase class-III; class III aminotransferase complement(1342979..1344379) Stenotrophomonas maltophilia R551-3 6475035 YP_002027572.1 CDS Smal_1184 NC_011071.1 1344442 1345158 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: HAD-superfamily hydrolase subfamily IB hypothetical 1; KEGG: aav:Aave_4326 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(1344442..1345158) Stenotrophomonas maltophilia R551-3 6475036 YP_002027573.1 CDS Smal_1185 NC_011071.1 1345333 1346535 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dac:Daci_0133 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1345333..1346535) Stenotrophomonas maltophilia R551-3 6475037 YP_002027574.1 CDS Smal_1186 NC_011071.1 1346546 1346929 R KEGG: aav:Aave_4329 hypothetical protein; hypothetical protein complement(1346546..1346929) Stenotrophomonas maltophilia R551-3 6475038 YP_002027575.1 CDS Smal_1187 NC_011071.1 1346941 1347300 R KEGG: dac:Daci_0131 hypothetical protein; hypothetical protein complement(1346941..1347300) Stenotrophomonas maltophilia R551-3 6475039 YP_002027576.1 CDS Smal_1188 NC_011071.1 1347302 1348138 R PFAM: alpha/beta hydrolase fold; KEGG: dac:Daci_0130 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(1347302..1348138) Stenotrophomonas maltophilia R551-3 6475040 YP_002027577.1 CDS Smal_1189 NC_011071.1 1348219 1349598 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: mca:MCA1765 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1348219..1349598) Stenotrophomonas maltophilia R551-3 6475041 YP_002027578.1 CDS Smal_1190 NC_011071.1 1349595 1350278 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: reu:Reut_A0526 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1349595..1350278) Stenotrophomonas maltophilia R551-3 6475042 YP_002027579.1 CDS Smal_1191 NC_011071.1 1350411 1351538 R PFAM: metallophosphoesterase; KEGG: slo:Shew_1182 metallophosphoesterase; metallophosphoesterase complement(1350411..1351538) Stenotrophomonas maltophilia R551-3 6475043 YP_002027580.1 CDS Smal_1192 NC_011071.1 1351612 1352061 R PFAM: helix-turn-helix HxlR type; KEGG: bbr:BB2332 putative transcriptional regulator; HxlR family transcriptional regulator complement(1351612..1352061) Stenotrophomonas maltophilia R551-3 6475044 YP_002027581.1 CDS Smal_1193 NC_011071.1 1352139 1353323 D PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3735 major facilitator superfamily MFS_1; major facilitator superfamily protein 1352139..1353323 Stenotrophomonas maltophilia R551-3 6475045 YP_002027582.1 CDS Smal_1194 NC_011071.1 1353348 1354763 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: psa:PST_0006 GGDEF domain protein; diguanylate cyclase complement(1353348..1354763) Stenotrophomonas maltophilia R551-3 6475046 YP_002027583.1 CDS Smal_1195 NC_011071.1 1355053 1357302 D Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 1355053..1357302 Stenotrophomonas maltophilia R551-3 6475047 YP_002027584.1 CDS Smal_1196 NC_011071.1 1357522 1358502 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV1368 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 1357522..1358502 Stenotrophomonas maltophilia R551-3 6475048 YP_002027585.1 CDS Smal_1197 NC_011071.1 1358627 1359310 R PFAM: Endonuclease V; KEGG: xcb:XC_1403 endonuclease V; Deoxyribonuclease V complement(1358627..1359310) Stenotrophomonas maltophilia R551-3 6475049 YP_002027586.1 CDS gpmA NC_011071.1 1359405 1360154 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1359405..1360154 Stenotrophomonas maltophilia R551-3 6475050 YP_002027587.1 CDS Smal_1199 NC_011071.1 1360315 1362408 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcv:XCV3027 metallopeptidase precursor; endothelin-converting enzyme 1 1360315..1362408 Stenotrophomonas maltophilia R551-3 6475051 YP_002027588.1 CDS Smal_1200 NC_011071.1 1362501 1363112 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: mfa:Mfla_1725 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1362501..1363112) Stenotrophomonas maltophilia R551-3 6475052 YP_002027589.1 CDS Smal_1201 NC_011071.1 1363164 1366628 R KEGG: xom:XOO_1373 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1363164..1366628) Stenotrophomonas maltophilia R551-3 6475053 YP_002027590.1 CDS Smal_1202 NC_011071.1 1366778 1367323 R PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1417 hypothetical protein; N-acetyltransferase GCN5 complement(1366778..1367323) Stenotrophomonas maltophilia R551-3 6475054 YP_002027591.1 CDS Smal_1203 NC_011071.1 1367419 1368276 R PFAM: protein of unknown function DUF519; KEGG: xcv:XCV3016 hypothetical protein; hypothetical protein complement(1367419..1368276) Stenotrophomonas maltophilia R551-3 6475055 YP_002027592.1 CDS Smal_1204 NC_011071.1 1368312 1369040 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 1368312..1369040 Stenotrophomonas maltophilia R551-3 6475056 YP_002027593.1 CDS Smal_1205 NC_011071.1 1369044 1370504 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 1369044..1370504 Stenotrophomonas maltophilia R551-3 6475057 YP_002027594.1 CDS Smal_1206 NC_011071.1 1370586 1371905 D PFAM: Inner membrane CreD family protein; KEGG: xcb:XC_1423 hypothetical protein; hypothetical protein 1370586..1371905 Stenotrophomonas maltophilia R551-3 6475058 YP_002027595.1 CDS Smal_1207 NC_011071.1 1371916 1372326 D hypothetical protein 1371916..1372326 Stenotrophomonas maltophilia R551-3 6475059 YP_002027596.1 CDS Smal_1208 NC_011071.1 1372498 1374075 D PFAM: peptidase M20; peptidase M28; KEGG: aba:Acid345_2940 peptidase M28; peptidase M28 1372498..1374075 Stenotrophomonas maltophilia R551-3 6475060 YP_002027597.1 CDS gltX NC_011071.1 1374229 1375632 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1374229..1375632 Stenotrophomonas maltophilia R551-3 6475061 YP_002027598.1 CDS Smal_1210 NC_011071.1 1375667 1376158 D PFAM: ferric-uptake regulator; KEGG: xcb:XC_1430 transcriptional regulator fur family; Fur family ferric uptake regulator 1375667..1376158 Stenotrophomonas maltophilia R551-3 6475062 YP_002027599.1 CDS Smal_1211 NC_011071.1 1376251 1377411 R PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_4248 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1376251..1377411) Stenotrophomonas maltophilia R551-3 6475063 YP_002027600.1 CDS Smal_1212 NC_011071.1 1377422 1379095 R PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4249 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1377422..1379095) Stenotrophomonas maltophilia R551-3 6475064 YP_002027601.1 CDS Smal_1213 NC_011071.1 1379095 1379661 R PFAM: regulatory protein TetR; KEGG: dac:Daci_4250 transcriptional regulator, TetR family; regulatory protein TetR complement(1379095..1379661) Stenotrophomonas maltophilia R551-3 6475065 YP_002027602.1 CDS Smal_1214 NC_011071.1 1379891 1382095 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1459 outer membrane hemin receptor; TonB-dependent receptor complement(1379891..1382095) Stenotrophomonas maltophilia R551-3 6475066 YP_002027603.1 CDS Smal_1215 NC_011071.1 1382232 1382645 D KEGG: xom:XOO_1421 hypothetical protein; hypothetical protein 1382232..1382645 Stenotrophomonas maltophilia R551-3 6475067 YP_002027604.1 CDS Smal_1216 NC_011071.1 1382756 1382935 D KEGG: xom:XOO_1422 hypothetical protein; hypothetical protein 1382756..1382935 Stenotrophomonas maltophilia R551-3 6475068 YP_002027605.1 CDS Smal_1217 NC_011071.1 1383089 1384342 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: xac:XAC2824 phosphodiesterase-nucleotide pyrophosphatase; Nucleotide diphosphatase complement(1383089..1384342) Stenotrophomonas maltophilia R551-3 6475069 YP_002027606.1 CDS Smal_1218 NC_011071.1 1384777 1385268 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: xac:XAC2823 6-O-methylguanine-DNA methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(1384777..1385268) Stenotrophomonas maltophilia R551-3 6475070 YP_002027607.1 CDS Smal_1219 NC_011071.1 1385265 1386743 R PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: xcb:XC_1465 DNA methylation and regulatory protein Ada; AraC family transcriptional regulator complement(1385265..1386743) Stenotrophomonas maltophilia R551-3 6475071 YP_002027608.1 CDS Smal_1220 NC_011071.1 1387182 1388345 D KEGG: xcv:XCV2982 putative secreted protein; hypothetical protein 1387182..1388345 Stenotrophomonas maltophilia R551-3 6475072 YP_002027609.1 CDS Smal_1221 NC_011071.1 1388404 1388949 D KEGG: xcv:XCV2980 putative secreted protein; hypothetical protein 1388404..1388949 Stenotrophomonas maltophilia R551-3 6475073 YP_002027610.1 CDS Smal_1222 NC_011071.1 1388961 1389350 D KEGG: xcv:XCV2979 hypothetical protein; hypothetical protein 1388961..1389350 Stenotrophomonas maltophilia R551-3 6475074 YP_002027611.1 CDS Smal_1223 NC_011071.1 1389431 1390609 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: xcc:XCC2647 hypothetical protein; hypothetical protein 1389431..1390609 Stenotrophomonas maltophilia R551-3 6475075 YP_002027612.1 CDS Smal_1224 NC_011071.1 1390635 1390856 R KEGG: xcv:XCV2977 hypothetical protein; hypothetical protein complement(1390635..1390856) Stenotrophomonas maltophilia R551-3 6475076 YP_002027613.1 CDS Smal_1225 NC_011071.1 1391122 1393062 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV2974 ATP-dependent RNA helicase; DEAD/DEAH box helicase 1391122..1393062 Stenotrophomonas maltophilia R551-3 6475077 YP_002027614.1 CDS Smal_1226 NC_011071.1 1393290 1395713 D KEGG: xcv:XCV2973 putative signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1393290..1395713 Stenotrophomonas maltophilia R551-3 6475078 YP_002027615.1 CDS Smal_1227 NC_011071.1 1395823 1397487 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mms:mma_1623 diguanylate cyclase; diguanylate cyclase 1395823..1397487 Stenotrophomonas maltophilia R551-3 6475079 YP_002027616.1 CDS Smal_1228 NC_011071.1 1397522 1398244 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xcb:XC_1477 pseudouridylate synthase; pseudouridine synthase 1397522..1398244 Stenotrophomonas maltophilia R551-3 6475080 YP_002027617.1 CDS Smal_1229 NC_011071.1 1398389 1399459 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: xcv:XCV2971 putative sensor protein; diguanylate cyclase 1398389..1399459 Stenotrophomonas maltophilia R551-3 6475081 YP_002027618.1 CDS Smal_1230 NC_011071.1 1399580 1400740 D KEGG: pmy:Pmen_1016 SMC domain protein; SMC domain-containing protein 1399580..1400740 Stenotrophomonas maltophilia R551-3 6475082 YP_002027619.1 CDS Smal_1231 NC_011071.1 1400771 1401718 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC2809 hypothetical protein; hypothetical protein complement(1400771..1401718) Stenotrophomonas maltophilia R551-3 6475083 YP_002027620.1 CDS Smal_1232 NC_011071.1 1401764 1402576 R PFAM: protein of unknown function DUF72; KEGG: xac:XAC2808 hypothetical protein; hypothetical protein complement(1401764..1402576) Stenotrophomonas maltophilia R551-3 6475084 YP_002027621.1 CDS Smal_1233 NC_011071.1 1402576 1403019 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: har:HEAR0063 putative glyoxalase/bleomycin resistance protein/dihydroxybiphenyl dioxygenase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1402576..1403019) Stenotrophomonas maltophilia R551-3 6475085 YP_002027622.1 CDS Smal_1234 NC_011071.1 1403130 1404689 D PFAM: beta-lactamase; KEGG: xac:XAC2806 beta-lactamase; beta-lactamase 1403130..1404689 Stenotrophomonas maltophilia R551-3 6475086 YP_002027623.1 CDS Smal_1235 NC_011071.1 1404861 1406693 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1484 ABC transporter ATP-binding protein; ABC transporter-like protein 1404861..1406693 Stenotrophomonas maltophilia R551-3 6475087 YP_002027624.1 CDS Smal_1236 NC_011071.1 1406813 1408036 D PFAM: histidine acid phosphatase; KEGG: spt:SPA1733 glucose-1-phosphatase/inositol phosphatase; glucose-1-phosphatase/inositol phosphatase 1406813..1408036 Stenotrophomonas maltophilia R551-3 6475088 YP_002027625.1 CDS Smal_1237 NC_011071.1 1408178 1409986 R PFAM: protein of unknown function DUF885; KEGG: xcb:XC_1485 hypothetical protein; hypothetical protein complement(1408178..1409986) Stenotrophomonas maltophilia R551-3 6475089 YP_002027626.1 CDS Smal_1238 NC_011071.1 1410100 1410456 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: xcv:XCV2953 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1410100..1410456 Stenotrophomonas maltophilia R551-3 6475090 YP_002027627.1 CDS Smal_1239 NC_011071.1 1410453 1411256 D KEGG: xcv:XCV2952 putative secreted protein; hypothetical protein 1410453..1411256 Stenotrophomonas maltophilia R551-3 6475091 YP_002027628.1 CDS Smal_1240 NC_011071.1 1411369 1411662 R KEGG: xcb:XC_1487 hypothetical protein; hypothetical protein complement(1411369..1411662) Stenotrophomonas maltophilia R551-3 6475092 YP_002027629.1 CDS Smal_1241 NC_011071.1 1411731 1412675 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_1490 transcriptional regulator; LysR family transcriptional regulator complement(1411731..1412675) Stenotrophomonas maltophilia R551-3 6475093 YP_002027630.1 CDS Smal_1242 NC_011071.1 1412792 1413664 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_1491 hypothetical protein; hypothetical protein 1412792..1413664 Stenotrophomonas maltophilia R551-3 6475094 YP_002027631.1 CDS Smal_1243 NC_011071.1 1414242 1415144 R KEGG: xcv:XCV2946 putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type; putative secreted cyclophilin type peptidyl prolyl cis-trans isomerase complement(1414242..1415144) Stenotrophomonas maltophilia R551-3 6475095 YP_002027632.1 CDS Smal_1244 NC_011071.1 1415281 1415646 D PFAM: transcriptional regulator PadR family protein; KEGG: xac:XAC1398 hypothetical protein; PadR-like family transcriptional regulator 1415281..1415646 Stenotrophomonas maltophilia R551-3 6475096 YP_002027633.1 CDS Smal_1245 NC_011071.1 1415643 1416632 D KEGG: xcv:XCV1456 hypothetical protein; hypothetical protein 1415643..1416632 Stenotrophomonas maltophilia R551-3 6475097 YP_002027634.1 CDS Smal_1246 NC_011071.1 1416771 1418078 R TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: xcb:XC_2885 PHB depolymerase; polyhydroxyalkanoate depolymerase complement(1416771..1418078) Stenotrophomonas maltophilia R551-3 6475098 YP_002027635.1 CDS Smal_1247 NC_011071.1 1418172 1418762 R PFAM: Methyltransferase type 12; KEGG: xcb:XC_2884 hypothetical protein; type 12 methyltransferase complement(1418172..1418762) Stenotrophomonas maltophilia R551-3 6475099 YP_002027636.1 CDS Smal_1248 NC_011071.1 1418910 1419365 D PFAM: conserved hypothetical protein; KEGG: xac:XAC1402 hypothetical protein; hypothetical protein 1418910..1419365 Stenotrophomonas maltophilia R551-3 6475100 YP_002027637.1 CDS Smal_1249 NC_011071.1 1419506 1420465 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1419506..1420465) Stenotrophomonas maltophilia R551-3 6475101 YP_002027638.1 CDS Smal_1250 NC_011071.1 1420579 1421448 R KEGG: esa:ESA_03296 hypothetical protein; hypothetical protein complement(1420579..1421448) Stenotrophomonas maltophilia R551-3 6475102 YP_002027639.1 CDS dnaE NC_011071.1 1421504 1425094 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1421504..1425094) Stenotrophomonas maltophilia R551-3 6475103 YP_002027640.1 CDS Smal_1252 NC_011071.1 1425354 1426028 R PFAM: ribonuclease HII/HIII; KEGG: xcb:XC_2879 ribonuclease HII; Ribonuclease H complement(1425354..1426028) Stenotrophomonas maltophilia R551-3 6475104 YP_002027641.1 CDS lpxB NC_011071.1 1426025 1427284 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(1426025..1427284) Stenotrophomonas maltophilia R551-3 6475105 YP_002027642.1 CDS Smal_1254 NC_011071.1 1427281 1428072 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1427281..1428072) Stenotrophomonas maltophilia R551-3 6475106 YP_002027643.1 CDS fabZ NC_011071.1 1428089 1428547 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1428089..1428547) Stenotrophomonas maltophilia R551-3 6475107 YP_002027644.1 CDS lpxD NC_011071.1 1428544 1429566 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1428544..1429566) Stenotrophomonas maltophilia R551-3 6475108 YP_002027645.1 CDS Smal_1257 NC_011071.1 1430030 1432393 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xac:XAC1413 outer membrane antigen; outer membrane protein assembly complex, YaeT protein complement(1430030..1432393) Stenotrophomonas maltophilia R551-3 6475109 YP_002027646.1 CDS Smal_1258 NC_011071.1 1432468 1433826 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: xcv:XCV1471 putative membrane-associated zinc metalloprotease; membrane-associated zinc metalloprotease complement(1432468..1433826) Stenotrophomonas maltophilia R551-3 6475110 YP_002027647.1 CDS Smal_1259 NC_011071.1 1433882 1435072 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1433882..1435072) Stenotrophomonas maltophilia R551-3 6475111 YP_002027648.1 CDS Smal_1260 NC_011071.1 1435075 1435911 R PFAM: phosphatidate cytidylyltransferase; KEGG: xac:XAC1416 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1435075..1435911) Stenotrophomonas maltophilia R551-3 6475112 YP_002027649.1 CDS Smal_1261 NC_011071.1 1435908 1436675 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1435908..1436675) Stenotrophomonas maltophilia R551-3 6475113 YP_002027650.1 CDS frr NC_011071.1 1436681 1437235 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1436681..1437235) Stenotrophomonas maltophilia R551-3 6475114 YP_002027651.1 CDS pyrH NC_011071.1 1437332 1438060 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1437332..1438060) Stenotrophomonas maltophilia R551-3 6475115 YP_002027652.1 CDS Smal_1264 NC_011071.1 1438181 1439719 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; KEGG: xac:XAC1420 hypothetical protein; diguanylate cyclase complement(1438181..1439719) Stenotrophomonas maltophilia R551-3 6475116 YP_002027653.1 CDS tsf NC_011071.1 1439977 1440852 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1439977..1440852) Stenotrophomonas maltophilia R551-3 6475117 YP_002027654.1 CDS rpsB NC_011071.1 1440978 1441781 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1440978..1441781) Stenotrophomonas maltophilia R551-3 6475118 YP_002027655.1 CDS Smal_1267 NC_011071.1 1442002 1442715 R KEGG: xcb:XC_2862 pili assembly chaperone; pili assembly chaperone complement(1442002..1442715) Stenotrophomonas maltophilia R551-3 6475119 YP_002027656.1 CDS Smal_1268 NC_011071.1 1442715 1442954 R hypothetical protein complement(1442715..1442954) Stenotrophomonas maltophilia R551-3 6475120 YP_002027657.1 CDS Smal_1269 NC_011071.1 1443036 1444055 R PFAM: Spore coat U domain protein; KEGG: xom:XOO_1870 hypothetical protein; Spore coat U domain-containing protein complement(1443036..1444055) Stenotrophomonas maltophilia R551-3 6475121 YP_002027658.1 CDS Smal_1270 NC_011071.1 1444052 1446424 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: xcb:XC_2859 outer membrane usher protein FasD; fimbrial biogenesis outer membrane usher protein complement(1444052..1446424) Stenotrophomonas maltophilia R551-3 6475122 YP_002027659.1 CDS Smal_1271 NC_011071.1 1446432 1447166 R KEGG: xom:XOO_1872 pili assembly chaperone; pili assembly chaperone complement(1446432..1447166) Stenotrophomonas maltophilia R551-3 6475123 YP_002027660.1 CDS Smal_1272 NC_011071.1 1447177 1447704 R PFAM: Spore coat U domain protein; KEGG: xcv:XCV1484 putative secreted protein; Spore coat U domain-containing protein complement(1447177..1447704) Stenotrophomonas maltophilia R551-3 6475124 YP_002027661.1 CDS Smal_1273 NC_011071.1 1447944 1448720 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1447944..1448720 Stenotrophomonas maltophilia R551-3 6475125 YP_002027662.1 CDS Smal_1274 NC_011071.1 1448723 1451350 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1448723..1451350 Stenotrophomonas maltophilia R551-3 6475126 YP_002027663.1 CDS dapD NC_011071.1 1451350 1452441 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1451350..1452441 Stenotrophomonas maltophilia R551-3 6475127 YP_002027664.1 CDS Smal_1276 NC_011071.1 1452444 1453313 D KEGG: bur:Bcep18194_C6887 hypothetical protein; hypothetical protein 1452444..1453313 Stenotrophomonas maltophilia R551-3 6475128 YP_002027665.1 CDS Smal_1277 NC_011071.1 1453345 1453716 D PFAM: arsenate reductase and related; KEGG: xcb:XC_2852 hypothetical protein; arsenate reductase-like protein 1453345..1453716 Stenotrophomonas maltophilia R551-3 6475129 YP_002027666.1 CDS Smal_1278 NC_011071.1 1453713 1454840 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1453713..1454840 Stenotrophomonas maltophilia R551-3 6475130 YP_002027667.1 CDS Smal_1279 NC_011071.1 1454921 1455799 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: xcb:XC_2850 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(1454921..1455799) Stenotrophomonas maltophilia R551-3 6475131 YP_002027668.1 CDS asnB NC_011071.1 1456135 1457826 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1456135..1457826 Stenotrophomonas maltophilia R551-3 6475132 YP_002027669.1 CDS Smal_1281 NC_011071.1 1457933 1459315 D PFAM: sodium/hydrogen exchanger; KEGG: bfs:BF3186 putative Na/H exchanger membrane protein; sodium/hydrogen exchanger 1457933..1459315 Stenotrophomonas maltophilia R551-3 6475133 YP_002027670.1 CDS Smal_1282 NC_011071.1 1459398 1461725 R PFAM: peptidase S45 penicillin amidase; KEGG: xcb:XC_2845 penicillin acylase II; peptidase S45 penicillin amidase complement(1459398..1461725) Stenotrophomonas maltophilia R551-3 6475134 YP_002027671.1 CDS Smal_1283 NC_011071.1 1461851 1462339 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: xac:XAC1438 bacterioferritin; bacterioferritin 1461851..1462339 Stenotrophomonas maltophilia R551-3 6475135 YP_002027672.1 CDS Smal_1284 NC_011071.1 1462644 1464887 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1462644..1464887) Stenotrophomonas maltophilia R551-3 6475136 YP_002027673.1 CDS Smal_1285 NC_011071.1 1464948 1465829 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_2841 transcriptional regulator; AraC family transcriptional regulator complement(1464948..1465829) Stenotrophomonas maltophilia R551-3 6475137 YP_002027674.1 CDS Smal_1286 NC_011071.1 1466002 1466445 D PFAM: regulatory protein MarR; KEGG: xcb:XC_2840 transcriptional regulator MarR family; MarR family transcriptional regulator 1466002..1466445 Stenotrophomonas maltophilia R551-3 6475138 YP_002027675.1 CDS Smal_1287 NC_011071.1 1466442 1467938 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xac:XAC1444 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1466442..1467938 Stenotrophomonas maltophilia R551-3 6475139 YP_002027676.1 CDS Smal_1288 NC_011071.1 1467950 1469128 D PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_2838 multidrug resistance efflux pump; secretion protein HlyD family protein 1467950..1469128 Stenotrophomonas maltophilia R551-3 6475140 YP_002027677.1 CDS Smal_1289 NC_011071.1 1469136 1470725 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_2837 multidrug resistance membrane translocase; EmrB/QacA subfamily drug resistance transporter 1469136..1470725 Stenotrophomonas maltophilia R551-3 6475141 YP_002027678.1 CDS Smal_1290 NC_011071.1 1470858 1471136 R KEGG: ecp:ECP_1918 hypothetical protein; hypothetical protein complement(1470858..1471136) Stenotrophomonas maltophilia R551-3 6475142 YP_002027679.1 CDS Smal_1291 NC_011071.1 1471603 1472502 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A1632 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1471603..1472502) Stenotrophomonas maltophilia R551-3 6475144 YP_002027680.1 CDS Smal_1292 NC_011071.1 1472602 1473348 D PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A1633 protein of unknown function DUF81; hypothetical protein 1472602..1473348 Stenotrophomonas maltophilia R551-3 6475145 YP_002027681.1 CDS Smal_1293 NC_011071.1 1473936 1476395 D KEGG: xcv:XCV1607 RNase R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 1473936..1476395 Stenotrophomonas maltophilia R551-3 6475148 YP_002027682.1 CDS Smal_1294 NC_011071.1 1476499 1476993 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: xac:XAC1568 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1476499..1476993 Stenotrophomonas maltophilia R551-3 6475149 YP_002027683.1 CDS Smal_1295 NC_011071.1 1477192 1477935 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: xcv:XCV1609 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase 1477192..1477935 Stenotrophomonas maltophilia R551-3 6475150 YP_002027684.1 CDS Smal_1296 NC_011071.1 1478095 1479534 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dac:Daci_2315 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein complement(1478095..1479534) Stenotrophomonas maltophilia R551-3 6475151 YP_002027685.1 CDS Smal_1297 NC_011071.1 1479531 1481489 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO_0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein complement(1479531..1481489) Stenotrophomonas maltophilia R551-3 6475152 YP_002027686.1 CDS Smal_1298 NC_011071.1 1481486 1482718 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aci:ACIAD3109 putative secretion protein (HlyD family); RND family efflux transporter MFP subunit complement(1481486..1482718) Stenotrophomonas maltophilia R551-3 6475153 YP_002027687.1 CDS Smal_1299 NC_011071.1 1482923 1483651 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo2745 probable DNA-binding response regulator; winged helix family two component transcriptional regulator 1482923..1483651 Stenotrophomonas maltophilia R551-3 6475154 YP_002027688.1 CDS Smal_1300 NC_011071.1 1483658 1485067 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mes:Meso_2910 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1483658..1485067 Stenotrophomonas maltophilia R551-3 6475155 YP_002027689.1 CDS Smal_1301 NC_011071.1 1485245 1488271 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV1610 putative sensor protein; two component regulator propeller domain-containing protein 1485245..1488271 Stenotrophomonas maltophilia R551-3 6475156 YP_002027690.1 CDS Smal_1302 NC_011071.1 1488686 1489270 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1488686..1489270) Stenotrophomonas maltophilia R551-3 6475157 YP_002027691.1 CDS Smal_1303 NC_011071.1 1489496 1490017 R PFAM: DoxX family protein; KEGG: pfo:PflO1_3375 DoxX; DoxX family protein complement(1489496..1490017) Stenotrophomonas maltophilia R551-3 6475158 YP_002027692.1 CDS Smal_1304 NC_011071.1 1490045 1490800 R KEGG: pfo:PflO1_2082 hypothetical protein; hypothetical protein complement(1490045..1490800) Stenotrophomonas maltophilia R551-3 6475159 YP_002027693.1 CDS Smal_1305 NC_011071.1 1490793 1491668 R PFAM: protein of unknown function DUF692; KEGG: pfo:PflO1_2081 hypothetical protein; hypothetical protein complement(1490793..1491668) Stenotrophomonas maltophilia R551-3 6475160 YP_002027694.1 CDS Smal_1306 NC_011071.1 1491655 1492011 R KEGG: spl:Spea_1502 hypothetical protein; hypothetical protein complement(1491655..1492011) Stenotrophomonas maltophilia R551-3 6475161 YP_002027695.1 CDS Smal_1307 NC_011071.1 1492270 1492977 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: xcv:XCV1613 phosphate transport system regulatory protein; phosphate uptake regulator PhoU complement(1492270..1492977) Stenotrophomonas maltophilia R551-3 6475162 YP_002027696.1 CDS pstB NC_011071.1 1493075 1493905 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1493075..1493905) Stenotrophomonas maltophilia R551-3 6475163 YP_002027697.1 CDS Smal_1309 NC_011071.1 1493925 1494788 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcc:XCC1525 ABC transporter phosphate permease; phosphate ABC transporter permease complement(1493925..1494788) Stenotrophomonas maltophilia R551-3 6475164 YP_002027698.1 CDS Smal_1310 NC_011071.1 1494788 1495756 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xac:XAC1576 ABC transporter phosphate permease; phosphate ABC transporter permease complement(1494788..1495756) Stenotrophomonas maltophilia R551-3 6475165 YP_002027699.1 CDS Smal_1311 NC_011071.1 1495839 1496927 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_2708 ABC transporter phosphate binding protein; phosphate ABC transporter substrate-binding protein complement(1495839..1496927) Stenotrophomonas maltophilia R551-3 6475166 YP_002027700.1 CDS Smal_1312 NC_011071.1 1497570 1498586 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: xom:XOO_2333 phosphate binding protein; phosphate ABC transporter substrate-binding protein complement(1497570..1498586) Stenotrophomonas maltophilia R551-3 6475167 YP_002027701.1 CDS Smal_1313 NC_011071.1 1499139 1500371 D PFAM: phosphate-selective porin O and P; KEGG: zmo:ZMO1045 hypothetical protein; phosphate-selective porin O and P 1499139..1500371 Stenotrophomonas maltophilia R551-3 6475168 YP_002027702.1 CDS Smal_1314 NC_011071.1 1500452 1501144 R KEGG: xcv:XCV1623 putative endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III complement(1500452..1501144) Stenotrophomonas maltophilia R551-3 6475169 YP_002027703.1 CDS Smal_1315 NC_011071.1 1501144 1501497 R KEGG: xoo:XOO2453 hypothetical protein; hypothetical protein complement(1501144..1501497) Stenotrophomonas maltophilia R551-3 6475170 YP_002027704.1 CDS Smal_1316 NC_011071.1 1501502 1502284 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xac:XAC1584 3-hydroxybutyryl-CoA dehydratase; enoyl-CoA hydratase/isomerase complement(1501502..1502284) Stenotrophomonas maltophilia R551-3 6475171 YP_002027705.1 CDS Smal_1317 NC_011071.1 1502452 1503153 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: xom:XOO_2322 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidyl-prolyl isomerase domain-containing protein 1502452..1503153 Stenotrophomonas maltophilia R551-3 6475172 YP_002027706.1 CDS Smal_1318 NC_011071.1 1503439 1504242 D PFAM: NUDIX hydrolase; protein of unknown function DUF1289; KEGG: xcv:XCV1627 putative NUDIX hydrolase family protein; hypothetical protein 1503439..1504242 Stenotrophomonas maltophilia R551-3 6475173 YP_002027707.1 CDS Smal_1319 NC_011071.1 1504239 1505141 D PFAM: Rhodanese domain protein; KEGG: xcv:XCV1628 thiosulfate sulfurtransferase; rhodanese domain-containing protein 1504239..1505141 Stenotrophomonas maltophilia R551-3 6475174 YP_002027708.1 CDS Smal_1320 NC_011071.1 1505569 1506135 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: xcb:XC_2695 hypothetical protein; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(1505569..1506135) Stenotrophomonas maltophilia R551-3 6475175 YP_002027709.1 CDS Smal_1321 NC_011071.1 1506208 1506735 D KEGG: xac:XAC1591 hypothetical protein; hypothetical protein 1506208..1506735 Stenotrophomonas maltophilia R551-3 6475176 YP_002027710.1 CDS rlmL NC_011071.1 1506880 1509018 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1506880..1509018 Stenotrophomonas maltophilia R551-3 6475177 YP_002027711.1 CDS Smal_1323 NC_011071.1 1509140 1509469 R KEGG: xcb:XC_0260 hypothetical protein; hypothetical protein complement(1509140..1509469) Stenotrophomonas maltophilia R551-3 6475178 YP_002027712.1 CDS Smal_1324 NC_011071.1 1509466 1511103 R KEGG: xcv:XCV0278 hypothetical protein; hypothetical protein complement(1509466..1511103) Stenotrophomonas maltophilia R551-3 6475179 YP_002027713.1 CDS Smal_1325 NC_011071.1 1511100 1511414 R KEGG: xcv:XCV0279 hypothetical protein; hypothetical protein complement(1511100..1511414) Stenotrophomonas maltophilia R551-3 6475180 YP_002027714.1 CDS Smal_1326 NC_011071.1 1511522 1513747 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:PflO1_2583 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1511522..1513747) Stenotrophomonas maltophilia R551-3 6475181 YP_002027715.1 CDS Smal_1327 NC_011071.1 1514039 1515325 R PFAM: protein of unknown function DUF445; KEGG: xac:XAC2491 hypothetical protein; hypothetical protein complement(1514039..1515325) Stenotrophomonas maltophilia R551-3 6475182 YP_002027716.1 CDS Smal_1328 NC_011071.1 1515444 1516322 R KEGG: xcv:XCV2669 hypothetical protein; hypothetical protein complement(1515444..1516322) Stenotrophomonas maltophilia R551-3 6475183 YP_002027717.1 CDS Smal_1329 NC_011071.1 1516386 1517738 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1516386..1517738) Stenotrophomonas maltophilia R551-3 6475184 YP_002027718.1 CDS Smal_1330 NC_011071.1 1517905 1519401 D PFAM: Aldehyde Dehydrogenase_; KEGG: psa:PST_0046 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 1517905..1519401 Stenotrophomonas maltophilia R551-3 6475185 YP_002027719.1 CDS Smal_1331 NC_011071.1 1519555 1520196 R KEGG: rru:Rru_A0746 hypothetical protein; hypothetical protein complement(1519555..1520196) Stenotrophomonas maltophilia R551-3 6475186 YP_002027720.1 CDS Smal_1332 NC_011071.1 1520344 1521645 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xoo:XOO2788 metabolite transport protein; major facilitator superfamily protein 1520344..1521645 Stenotrophomonas maltophilia R551-3 6475187 YP_002027721.1 CDS Smal_1333 NC_011071.1 1521626 1522087 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: xcb:XC_1765 hypothetical protein; hypothetical protein complement(1521626..1522087) Stenotrophomonas maltophilia R551-3 6475188 YP_002027722.1 CDS Smal_1334 NC_011071.1 1522173 1523516 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: xcv:XCV2660 two-component system response regulator; response regulator receiver modulated diguanylate cyclase complement(1522173..1523516) Stenotrophomonas maltophilia R551-3 6475189 YP_002027723.1 CDS Smal_1335 NC_011071.1 1523575 1525185 R PFAM: MASE1 domain protein; KEGG: xcb:XC_2013 sensor kinase; MASE1 domain-containing protein complement(1523575..1525185) Stenotrophomonas maltophilia R551-3 6475190 YP_002027724.1 CDS Smal_1336 NC_011071.1 1525486 1525911 D KEGG: aav:Aave_0536 putative secreted protein; hypothetical protein 1525486..1525911 Stenotrophomonas maltophilia R551-3 6475191 YP_002027725.1 CDS Smal_1337 NC_011071.1 1526039 1527637 R PFAM: MASE1 domain protein; KEGG: xcv:XCV1810 putative sugar transporter component; MASE1 domain-containing protein complement(1526039..1527637) Stenotrophomonas maltophilia R551-3 6475192 YP_002027726.1 CDS Smal_1338 NC_011071.1 1527836 1529113 R PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_1767 hypothetical protein; FAD dependent oxidoreductase complement(1527836..1529113) Stenotrophomonas maltophilia R551-3 6475193 YP_002027727.1 CDS Smal_1339 NC_011071.1 1529275 1530036 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: xcb:XC_1769 glutamine amidotransferase; peptidase C26 1529275..1530036 Stenotrophomonas maltophilia R551-3 6475194 YP_002027728.1 CDS Smal_1340 NC_011071.1 1530033 1531427 D PFAM: glutamine synthetase catalytic region; KEGG: xoo:XOO2782 glutamine synthetase; glutamate--putrescine ligase 1530033..1531427 Stenotrophomonas maltophilia R551-3 6475195 YP_002027729.1 CDS Smal_1341 NC_011071.1 1531519 1532628 D PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_1772 periplasmic putrescine-binding protein; permease protein; family 1 extracellular solute-binding protein 1531519..1532628 Stenotrophomonas maltophilia R551-3 6475196 YP_002027730.1 CDS Smal_1342 NC_011071.1 1532685 1534085 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2255 putative flavoprotein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1532685..1534085) Stenotrophomonas maltophilia R551-3 6475197 YP_002027731.1 CDS Smal_1343 NC_011071.1 1534359 1535495 D KEGG: xac:XAC2472 ATP-binding component of putrescine transport system; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1534359..1535495 Stenotrophomonas maltophilia R551-3 6475198 YP_002027732.1 CDS Smal_1344 NC_011071.1 1535492 1536424 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV2649 putrescine ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1535492..1536424 Stenotrophomonas maltophilia R551-3 6475199 YP_002027733.1 CDS Smal_1345 NC_011071.1 1536421 1537263 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV2648 putrescine ABC transporter permease; ornithine carbamoyltransferase 1536421..1537263 Stenotrophomonas maltophilia R551-3 6475200 YP_002027734.1 CDS Smal_1346 NC_011071.1 1537347 1538711 D PFAM: Aldehyde Dehydrogenase_; KEGG: xcv:XCV2647 putative aldehyde dehydrogenase; aldehyde dehydrogenase 1537347..1538711 Stenotrophomonas maltophilia R551-3 6475201 YP_002027735.1 CDS Smal_1347 NC_011071.1 1538852 1539874 R PFAM: Mg2 transporter protein CorA family protein; KEGG: xac:XAC2468 magnesium and cobalt transport protein; Mg2 transporter protein CorA family protein complement(1538852..1539874) Stenotrophomonas maltophilia R551-3 6475202 YP_002027736.1 CDS Smal_1348 NC_011071.1 1539881 1541131 R KEGG: xac:XAC2467 hypothetical protein; hypothetical protein complement(1539881..1541131) Stenotrophomonas maltophilia R551-3 6475203 YP_002027737.1 CDS Smal_1349 NC_011071.1 1541128 1542009 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: xcv:XCV2644 magnesium and cobalt efflux protein; hypothetical protein complement(1541128..1542009) Stenotrophomonas maltophilia R551-3 6475204 YP_002027738.1 CDS Smal_1350 NC_011071.1 1542074 1542631 R KEGG: xac:XAC2465 hypothetical protein; hypothetical protein complement(1542074..1542631) Stenotrophomonas maltophilia R551-3 6475205 YP_002027739.1 CDS Smal_1351 NC_011071.1 1542660 1543268 R hypothetical protein complement(1542660..1543268) Stenotrophomonas maltophilia R551-3 6475206 YP_002027740.1 CDS Smal_1352 NC_011071.1 1543311 1543796 R PFAM: protein of unknown function UPF0054; KEGG: xac:XAC2464 hypothetical protein; putative metalloprotease complement(1543311..1543796) Stenotrophomonas maltophilia R551-3 6475207 YP_002027741.1 CDS Smal_1353 NC_011071.1 1543793 1544779 R PFAM: PhoH family protein; KEGG: xac:XAC2462 ATP-binding protein; PhoH family protein complement(1543793..1544779) Stenotrophomonas maltophilia R551-3 6475208 YP_002027742.1 CDS Smal_1354 NC_011071.1 1545298 1546248 D PFAM: secretion protein HlyD family protein; KEGG: saz:Sama_3589 putative HlyD family secretion protein; secretion protein HlyD family protein 1545298..1546248 Stenotrophomonas maltophilia R551-3 6475209 YP_002027743.1 CDS Smal_1355 NC_011071.1 1546245 1547192 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_2574 ABC transporter related; ABC transporter-like protein 1546245..1547192 Stenotrophomonas maltophilia R551-3 6475210 YP_002027744.1 CDS Smal_1356 NC_011071.1 1547189 1548301 D PFAM: ABC-2 type transporter; KEGG: aha:AHA_0486 ABC-type multidrug transport system, permease component; ABC-2 type transporter 1547189..1548301 Stenotrophomonas maltophilia R551-3 6475211 YP_002027745.1 CDS Smal_1357 NC_011071.1 1548368 1549786 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1548368..1549786) Stenotrophomonas maltophilia R551-3 6475212 YP_002027746.1 CDS Smal_1358 NC_011071.1 1549956 1550576 R PFAM: Glutathione S-transferase domain; KEGG: met:M446_4826 glutathione S-transferase domain; glutathione S-transferase domain-containing protein complement(1549956..1550576) Stenotrophomonas maltophilia R551-3 6475213 YP_002027747.1 CDS Smal_1359 NC_011071.1 1550657 1551625 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: xcb:XC_1790 repressor; helix-turn-helix type 11 domain-containing protein 1550657..1551625 Stenotrophomonas maltophilia R551-3 6475214 YP_002027748.1 CDS Smal_1360 NC_011071.1 1551672 1552586 D PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC2458 soluble lytic murein transglycosylase; Lytic transglycosylase 1551672..1552586 Stenotrophomonas maltophilia R551-3 6475215 YP_002027749.1 CDS Smal_1361 NC_011071.1 1552798 1553418 D KEGG: xcb:XC_1792 ubiquinol cytochrome c oxidoreductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1552798..1553418 Stenotrophomonas maltophilia R551-3 6475216 YP_002027750.1 CDS Smal_1362 NC_011071.1 1553418 1554677 D PFAM: Cytochrome b/b6 domain; KEGG: xom:XOO_2601 ubiquinol cytochrome c oxidoreductase; Cytochrome b/b6 domain 1553418..1554677 Stenotrophomonas maltophilia R551-3 6475217 YP_002027751.1 CDS Smal_1363 NC_011071.1 1554670 1555419 D PFAM: cytochrome c1; KEGG: xcb:XC_1794 ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit; cytochrome c1 1554670..1555419 Stenotrophomonas maltophilia R551-3 6475218 YP_002027752.1 CDS Smal_1364 NC_011071.1 1555554 1556189 D PFAM: Glutathione S-transferase domain; KEGG: xac:XAC2454 stringent starvation protein A; glutathione S-transferase domain-containing protein 1555554..1556189 Stenotrophomonas maltophilia R551-3 6475219 YP_002027753.1 CDS Smal_1365 NC_011071.1 1556274 1556726 D PFAM: Stringent starvation protein B; KEGG: xac:XAC2453 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 1556274..1556726 Stenotrophomonas maltophilia R551-3 6475220 YP_002027754.1 CDS Smal_1366 NC_011071.1 1556880 1557230 R KEGG: xcb:XC_1798 hypothetical protein; hypothetical protein complement(1556880..1557230) Stenotrophomonas maltophilia R551-3 6475221 YP_002027755.1 CDS Smal_1367 NC_011071.1 1557298 1558299 R KEGG: xcv:XCV2832 putative secreted protein; hypothetical protein complement(1557298..1558299) Stenotrophomonas maltophilia R551-3 6475222 YP_002027756.1 CDS Smal_1368 NC_011071.1 1558415 1559266 R KEGG: xcb:XC_1611 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(1558415..1559266) Stenotrophomonas maltophilia R551-3 6475223 YP_002027757.1 CDS Smal_1369 NC_011071.1 1559263 1559532 R PFAM: protein of unknown function DUF343; KEGG: xac:XAC2680 hypothetical protein; hypothetical protein complement(1559263..1559532) Stenotrophomonas maltophilia R551-3 6475224 YP_002027758.1 CDS Smal_1370 NC_011071.1 1559591 1560094 D KEGG: xcb:XC_1613 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1559591..1560094 Stenotrophomonas maltophilia R551-3 6475225 YP_002027759.1 CDS Smal_1371 NC_011071.1 1560091 1561239 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1560091..1561239 Stenotrophomonas maltophilia R551-3 6475226 YP_002027760.1 CDS Smal_1372 NC_011071.1 1561352 1561693 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_A3878 alkylhydroperoxidase AhpD core; alkylhydroperoxidase-like protein 1561352..1561693 Stenotrophomonas maltophilia R551-3 6475227 YP_002027761.1 CDS Smal_1373 NC_011071.1 1561732 1562310 R PFAM: manganese and iron superoxide dismutase; KEGG: xac:XAC2677 iron superoxide dismutase; Superoxide dismutase complement(1561732..1562310) Stenotrophomonas maltophilia R551-3 6475228 YP_002027762.1 CDS Smal_1374 NC_011071.1 1562430 1562750 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: xcb:XC_1616 hypothetical protein; glutaredoxin-like protein 1562430..1562750 Stenotrophomonas maltophilia R551-3 6475229 YP_002027763.1 CDS Smal_1375 NC_011071.1 1562747 1563523 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_3039 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1562747..1563523 Stenotrophomonas maltophilia R551-3 6475230 YP_002027764.1 CDS Smal_1376 NC_011071.1 1563754 1566999 D KEGG: xcv:XCV2823 TonB-dependent outer membrane receptor; TonB-dependent outer membrane receptor 1563754..1566999 Stenotrophomonas maltophilia R551-3 6475231 YP_002027765.1 CDS Smal_1377 NC_011071.1 1567253 1568641 D PFAM: conserved hypothetical protein; KEGG: xcv:XCV2822 hypothetical protein; hypothetical protein 1567253..1568641 Stenotrophomonas maltophilia R551-3 6475232 YP_002027766.1 CDS Smal_1378 NC_011071.1 1568815 1569330 D KEGG: xcv:XCV2821 putative type IV pilus assembly protein FimT; putative type IV pilus assembly protein FimT 1568815..1569330 Stenotrophomonas maltophilia R551-3 6475233 YP_002027767.1 CDS Smal_1379 NC_011071.1 1569327 1569824 D TIGRFAM: type IV pilus modification protein PilV; KEGG: xcv:XCV2820 putative type IV pilus assembly protein PilV; type IV pilus modification protein PilV 1569327..1569824 Stenotrophomonas maltophilia R551-3 6475234 YP_002027768.1 CDS Smal_1380 NC_011071.1 1569833 1570990 D KEGG: xcb:XC_1623 hypothetical protein; hypothetical protein 1569833..1570990 Stenotrophomonas maltophilia R551-3 6475235 YP_002027769.1 CDS Smal_1381 NC_011071.1 1570996 1571517 D KEGG: xom:XOO_3032 PilX protein; PilX protein 1570996..1571517 Stenotrophomonas maltophilia R551-3 6475236 YP_002027770.1 CDS Smal_1382 NC_011071.1 1571531 1575295 D KEGG: xom:XOO_3031 PilY1 protein; PilY1 protein 1571531..1575295 Stenotrophomonas maltophilia R551-3 6475237 YP_002027771.1 CDS Smal_1383 NC_011071.1 1575319 1575726 D KEGG: xcv:XCV2814 type IV pilin PilE; type IV pilin PilE 1575319..1575726 Stenotrophomonas maltophilia R551-3 6475238 YP_002027772.1 CDS Smal_1384 NC_011071.1 1575903 1576397 R KEGG: xcb:XC_1627 fimbrial biogenesis protein; fimbrial biogenesis protein complement(1575903..1576397) Stenotrophomonas maltophilia R551-3 6475240 YP_002027773.1 CDS Smal_1385 NC_011071.1 1576568 1578592 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1576568..1578592 Stenotrophomonas maltophilia R551-3 6475241 YP_002027774.1 CDS Smal_1386 NC_011071.1 1579038 1579379 R hypothetical protein complement(1579038..1579379) Stenotrophomonas maltophilia R551-3 6475244 YP_002027775.1 CDS Smal_1387 NC_011071.1 1579609 1579800 R hypothetical protein complement(1579609..1579800) Stenotrophomonas maltophilia R551-3 6475245 YP_002027776.1 CDS Smal_1388 NC_011071.1 1579832 1580020 R hypothetical protein complement(1579832..1580020) Stenotrophomonas maltophilia R551-3 6475246 YP_002027777.1 CDS Smal_1389 NC_011071.1 1580132 1580701 R PFAM: Redoxin domain protein; KEGG: tcx:Tcr_1569 putative thioredoxin; redoxin domain-containing protein complement(1580132..1580701) Stenotrophomonas maltophilia R551-3 6475247 YP_002027778.1 CDS Smal_1390 NC_011071.1 1580864 1581004 D hypothetical protein 1580864..1581004 Stenotrophomonas maltophilia R551-3 6475248 YP_002027779.1 CDS Smal_1391 NC_011071.1 1581059 1581343 R hypothetical protein complement(1581059..1581343) Stenotrophomonas maltophilia R551-3 6475249 YP_002027780.1 CDS Smal_1392 NC_011071.1 1581376 1582143 R PFAM: MltA-interacting MipA family protein; KEGG: spe:Spro_3701 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(1581376..1582143) Stenotrophomonas maltophilia R551-3 6475250 YP_002027781.1 CDS Smal_1393 NC_011071.1 1582288 1582959 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator; winged helix family two component transcriptional regulator 1582288..1582959 Stenotrophomonas maltophilia R551-3 6475251 YP_002027782.1 CDS Smal_1394 NC_011071.1 1582961 1584304 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bja:blr4803 two-component hybrid sensor and regulator; integral membrane sensor signal transduction histidine kinase 1582961..1584304 Stenotrophomonas maltophilia R551-3 6475252 YP_002027783.1 CDS Smal_1395 NC_011071.1 1584363 1586762 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: xac:XAC2084 competence protein; DNA internalization-related competence protein ComEC/Rec2 1584363..1586762 Stenotrophomonas maltophilia R551-3 6475253 YP_002027784.1 CDS Smal_1396 NC_011071.1 1586766 1587428 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC2085 biopolymer transport protein; MotA/TolQ/ExbB proton channel 1586766..1587428 Stenotrophomonas maltophilia R551-3 6475254 YP_002027785.1 CDS Smal_1397 NC_011071.1 1587432 1587854 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV2253 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR 1587432..1587854 Stenotrophomonas maltophilia R551-3 6475255 YP_002027786.1 CDS Smal_1398 NC_011071.1 1587851 1589599 D KEGG: xcb:XC_1995 ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 1587851..1589599 Stenotrophomonas maltophilia R551-3 6475256 YP_002027787.1 CDS lpxK NC_011071.1 1589599 1590618 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1589599..1590618 Stenotrophomonas maltophilia R551-3 6475257 YP_002027788.1 CDS Smal_1400 NC_011071.1 1590694 1591467 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1590694..1591467 Stenotrophomonas maltophilia R551-3 6475258 YP_002027789.1 CDS Smal_1401 NC_011071.1 1591464 1591952 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: xcb:XC_1998 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1591464..1591952 Stenotrophomonas maltophilia R551-3 6475259 YP_002027790.1 CDS Smal_1402 NC_011071.1 1591949 1593361 D PFAM: NHL repeat containing protein; KEGG: xac:XAC2091 hypothetical protein; NHL repeat containing protein 1591949..1593361 Stenotrophomonas maltophilia R551-3 6475260 YP_002027791.1 CDS uvrC NC_011071.1 1593358 1595202 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1593358..1595202 Stenotrophomonas maltophilia R551-3 6475261 YP_002027792.1 CDS Smal_1404 NC_011071.1 1595221 1595847 D KEGG: xcc:XCC2114 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1595221..1595847 Stenotrophomonas maltophilia R551-3 6475262 YP_002027793.1 CDS Smal_1405 NC_011071.1 1596232 1597338 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rme:Rmet_1653 monooxygenase, FAD-binding; monooxygenase FAD-binding 1596232..1597338 Stenotrophomonas maltophilia R551-3 6475264 YP_002027794.1 CDS Smal_1406 NC_011071.1 1597596 1597898 R KEGG: pfl:PFL_6208 hypothetical protein; hypothetical protein complement(1597596..1597898) Stenotrophomonas maltophilia R551-3 6475266 YP_002027795.1 CDS Smal_1407 NC_011071.1 1598272 1599597 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aav:Aave_4322 transcriptional regulator, fis family; NodT family RND efflux system outer membrane lipoprotein 1598272..1599597 Stenotrophomonas maltophilia R551-3 6475267 YP_002027796.1 CDS Smal_1408 NC_011071.1 1599594 1600733 D PFAM: protein of unknown function DUF214; KEGG: dac:Daci_0126 protein of unknown function DUF214; hypothetical protein 1599594..1600733 Stenotrophomonas maltophilia R551-3 6475268 YP_002027797.1 CDS Smal_1409 NC_011071.1 1600744 1601472 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4324 ABC transporter-related protein; ABC transporter-like protein 1600744..1601472 Stenotrophomonas maltophilia R551-3 6475269 YP_002027798.1 CDS Smal_1410 NC_011071.1 1601469 1602383 D PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_0128 secretion protein HlyD family protein; secretion protein HlyD family protein 1601469..1602383 Stenotrophomonas maltophilia R551-3 6475270 YP_002027799.1 CDS Smal_1411 NC_011071.1 1602386 1602835 R KEGG: lic:LIC11069 hypothetical protein; hypothetical protein complement(1602386..1602835) Stenotrophomonas maltophilia R551-3 6475271 YP_002027800.1 CDS Smal_1412 NC_011071.1 1602828 1603229 R KEGG: pfo:PflO1_5588 hypothetical protein; hypothetical protein complement(1602828..1603229) Stenotrophomonas maltophilia R551-3 6475272 YP_002027801.1 CDS Smal_1413 NC_011071.1 1603983 1604798 D KEGG: mgi:Mflv_2084 hypothetical protein; hypothetical protein 1603983..1604798 Stenotrophomonas maltophilia R551-3 6475276 YP_002027802.1 CDS Smal_1414 NC_011071.1 1604891 1605568 R KEGG: bcl:ABC1173 hypothetical protein; hypothetical protein complement(1604891..1605568) Stenotrophomonas maltophilia R551-3 6475277 YP_002027803.1 CDS Smal_1415 NC_011071.1 1605674 1606378 D PFAM: regulatory protein ArsR; KEGG: met:M446_4445 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1605674..1606378 Stenotrophomonas maltophilia R551-3 6475278 YP_002027804.1 CDS Smal_1416 NC_011071.1 1606503 1606772 D hypothetical protein 1606503..1606772 Stenotrophomonas maltophilia R551-3 6475279 YP_002027805.1 CDS Smal_1417 NC_011071.1 1606791 1607555 R KEGG: sen:SACE_5385 hypothetical protein; hypothetical protein complement(1606791..1607555) Stenotrophomonas maltophilia R551-3 6475280 YP_002027806.1 CDS Smal_1418 NC_011071.1 1607673 1607873 R hypothetical protein complement(1607673..1607873) Stenotrophomonas maltophilia R551-3 6475281 YP_002027807.1 CDS Smal_1419 NC_011071.1 1607964 1609040 R KEGG: sus:Acid_1970 hypothetical protein; hypothetical protein complement(1607964..1609040) Stenotrophomonas maltophilia R551-3 6475282 YP_002027808.1 CDS Smal_1420 NC_011071.1 1609303 1609815 D KEGG: dac:Daci_3561 hypothetical protein; hypothetical protein 1609303..1609815 Stenotrophomonas maltophilia R551-3 6475283 YP_002027809.1 CDS Smal_1421 NC_011071.1 1609912 1610745 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_0168 transcriptional regulator, AraC family; AraC family transcriptional regulator 1609912..1610745 Stenotrophomonas maltophilia R551-3 6475284 YP_002027810.1 CDS Smal_1422 NC_011071.1 1610749 1611141 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: nha:Nham_3430 CrcB protein; CrcB protein complement(1610749..1611141) Stenotrophomonas maltophilia R551-3 6475285 YP_002027811.1 CDS Smal_1423 NC_011071.1 1611310 1611711 R KEGG: tpt:Tpet_1197 phosphoesterase, RecJ domain protein; hypothetical protein complement(1611310..1611711) Stenotrophomonas maltophilia R551-3 6475286 YP_002027812.1 CDS Smal_1424 NC_011071.1 1611823 1612032 D hypothetical protein 1611823..1612032 Stenotrophomonas maltophilia R551-3 6475287 YP_002027813.1 CDS Smal_1425 NC_011071.1 1612386 1612622 D KEGG: xcb:XC_3779 hypothetical protein; hypothetical protein 1612386..1612622 Stenotrophomonas maltophilia R551-3 6475288 YP_002027814.1 CDS Smal_1426 NC_011071.1 1612624 1613673 R KEGG: aeh:Mlg_1877 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1612624..1613673) Stenotrophomonas maltophilia R551-3 6475289 YP_002027815.1 CDS Smal_1427 NC_011071.1 1613670 1613957 R KEGG: aeh:Mlg_1878 hypothetical protein; hypothetical protein complement(1613670..1613957) Stenotrophomonas maltophilia R551-3 6475290 YP_002027816.1 CDS Smal_1428 NC_011071.1 1614136 1614576 D KEGG: net:Neut_1441 putative sec-independent protein translocase protein TatC; putative sec-independent protein translocase protein TatC 1614136..1614576 Stenotrophomonas maltophilia R551-3 6475291 YP_002027817.1 CDS Smal_1429 NC_011071.1 1614621 1616030 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1614621..1616030 Stenotrophomonas maltophilia R551-3 6475292 YP_002027818.1 CDS Smal_1430 NC_011071.1 1616282 1616716 D PFAM: BLUF domain protein; KEGG: xac:XAC2120 hypothetical protein; BLUF domain-containing protein 1616282..1616716 Stenotrophomonas maltophilia R551-3 6475294 YP_002027819.1 CDS Smal_1431 NC_011071.1 1616858 1618144 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: xom:XOO_2935 polysaccharide biosynthetic protein; nucleotide sugar dehydrogenase 1616858..1618144 Stenotrophomonas maltophilia R551-3 6475295 YP_002027820.1 CDS Smal_1432 NC_011071.1 1618200 1619822 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: maq:Maqu_2046 ferredoxin-dependent glutamate synthase; glutamate synthase 1618200..1619822 Stenotrophomonas maltophilia R551-3 6475296 YP_002027821.1 CDS Smal_1433 NC_011071.1 1619926 1620387 D PFAM: GCN5-related N-acetyltransferase; KEGG: swd:Swoo_1850 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1619926..1620387 Stenotrophomonas maltophilia R551-3 6475297 YP_002027822.1 CDS Smal_1434 NC_011071.1 1620497 1621744 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_2092 hypothetical protein; hypothetical protein complement(1620497..1621744) Stenotrophomonas maltophilia R551-3 6475298 YP_002027823.1 CDS Smal_1435 NC_011071.1 1621731 1622165 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: xom:XOO_2933 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(1621731..1622165) Stenotrophomonas maltophilia R551-3 6475299 YP_002027824.1 CDS Smal_1436 NC_011071.1 1622236 1622601 D KEGG: xcb:XC_2094 hypothetical protein; hypothetical protein 1622236..1622601 Stenotrophomonas maltophilia R551-3 6475300 YP_002027825.1 CDS Smal_1437 NC_011071.1 1622907 1623674 D PFAM: Rhodanese domain protein; KEGG: xcb:XC_2095 hypothetical protein; rhodanese superfamily protein 1622907..1623674 Stenotrophomonas maltophilia R551-3 6475301 YP_002027826.1 CDS Smal_1438 NC_011071.1 1623883 1624878 D PFAM: Luciferase-like monooxygenase; KEGG: xac:XAC1706 hypothetical protein; luciferase-like monooxygenase 1623883..1624878 Stenotrophomonas maltophilia R551-3 6475302 YP_002027827.1 CDS Smal_1439 NC_011071.1 1624947 1625444 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: xcb:XC_2544 general stress protein; pyridoxamine 5'-phosphate oxidase-like protein 1624947..1625444 Stenotrophomonas maltophilia R551-3 6475303 YP_002027828.1 CDS Smal_1440 NC_011071.1 1625537 1626196 R PFAM: Exopolysaccharide synthesis ExoD; KEGG: xcv:XCV1742 exopolysaccharide synthesis protein ExoD; Exopolysaccharide synthesis ExoD complement(1625537..1626196) Stenotrophomonas maltophilia R551-3 6475304 YP_002027829.1 CDS Smal_1441 NC_011071.1 1626180 1627499 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: xac:XAC1709 hemolysin; hypothetical protein complement(1626180..1627499) Stenotrophomonas maltophilia R551-3 6475305 YP_002027830.1 CDS Smal_1442 NC_011071.1 1627777 1628403 D KEGG: xac:XAC1710 hypothetical protein; hypothetical protein 1627777..1628403 Stenotrophomonas maltophilia R551-3 6475306 YP_002027831.1 CDS Smal_1443 NC_011071.1 1628417 1629538 D PFAM: phosphate transporter; KEGG: xcb:XC_2540 transport protein; phosphate transporter 1628417..1629538 Stenotrophomonas maltophilia R551-3 6475307 YP_002027832.1 CDS Smal_1444 NC_011071.1 1629936 1631432 R PFAM: peptidase S10 serine carboxypeptidase; KEGG: xcb:XC_2538 carboxypeptidase-related protein; peptidase S10 serine carboxypeptidase complement(1629936..1631432) Stenotrophomonas maltophilia R551-3 6475308 YP_002027833.1 CDS Smal_1445 NC_011071.1 1631543 1632121 R PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3191 putative acetyltransferase; N-acetyltransferase GCN5 complement(1631543..1632121) Stenotrophomonas maltophilia R551-3 6475309 YP_002027834.1 CDS Smal_1446 NC_011071.1 1632356 1634245 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1632356..1634245) Stenotrophomonas maltophilia R551-3 6475310 YP_002027835.1 CDS Smal_1447 NC_011071.1 1634388 1634651 D KEGG: xom:XOO_2818 hypothetical protein; hypothetical protein 1634388..1634651 Stenotrophomonas maltophilia R551-3 6475311 YP_002027836.1 CDS pyrG NC_011071.1 1635052 1636716 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1635052..1636716 Stenotrophomonas maltophilia R551-3 6475312 YP_002027837.1 CDS Smal_1449 NC_011071.1 1636806 1637636 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1636806..1637636 Stenotrophomonas maltophilia R551-3 6475313 YP_002027838.1 CDS Smal_1450 NC_011071.1 1637633 1637977 D KEGG: xcb:XC_2532 hypothetical protein; hypothetical protein 1637633..1637977 Stenotrophomonas maltophilia R551-3 6475314 YP_002027839.1 CDS Smal_1451 NC_011071.1 1637977 1638306 D KEGG: xcb:XC_2532 hypothetical protein; hypothetical protein 1637977..1638306 Stenotrophomonas maltophilia R551-3 6475315 YP_002027840.1 CDS eno NC_011071.1 1638404 1639696 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1638404..1639696 Stenotrophomonas maltophilia R551-3 6475316 YP_002027841.1 CDS ftsB NC_011071.1 1639701 1640054 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1639701..1640054 Stenotrophomonas maltophilia R551-3 6475317 YP_002027842.1 CDS ispD NC_011071.1 1640051 1640749 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1640051..1640749 Stenotrophomonas maltophilia R551-3 6475318 YP_002027843.1 CDS ispF NC_011071.1 1640784 1641281 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1640784..1641281 Stenotrophomonas maltophilia R551-3 6475319 YP_002027844.1 CDS truD NC_011071.1 1641278 1642309 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1641278..1642309 Stenotrophomonas maltophilia R551-3 6475320 YP_002027845.1 CDS Smal_1457 NC_011071.1 1642379 1642918 R PFAM: Smr protein/MutS2; KEGG: xom:XOO_2809 hypothetical protein; Smr protein/MutS2 complement(1642379..1642918) Stenotrophomonas maltophilia R551-3 6475321 YP_002027846.1 CDS surE NC_011071.1 1643128 1643907 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1643128..1643907 Stenotrophomonas maltophilia R551-3 6475322 YP_002027847.1 CDS Smal_1459 NC_011071.1 1643904 1644581 D KEGG: xac:XAC1726 L-isoaspartate protein carboxylmethyltransferase type II; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1643904..1644581 Stenotrophomonas maltophilia R551-3 6475323 YP_002027848.1 CDS Smal_1460 NC_011071.1 1644600 1645214 D KEGG: xom:XOO_2806 hypothetical protein; hypothetical protein 1644600..1645214 Stenotrophomonas maltophilia R551-3 6475324 YP_002027849.1 CDS Smal_1461 NC_011071.1 1645211 1645996 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: xcv:XCV1761 outer membrane lipoprotein; peptidase M23 1645211..1645996 Stenotrophomonas maltophilia R551-3 6475325 YP_002027850.1 CDS Smal_1462 NC_011071.1 1646048 1647013 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein complement(1646048..1647013) Stenotrophomonas maltophilia R551-3 6475326 YP_002027851.1 CDS Smal_1463 NC_011071.1 1647399 1647887 D KEGG: kpn:KPN_00898 putative lipoprotein; hypothetical protein 1647399..1647887 Stenotrophomonas maltophilia R551-3 6475327 YP_002027852.1 CDS Smal_1464 NC_011071.1 1647915 1648289 R PFAM: protein of unknown function DUF498; KEGG: xac:XAC1729 hypothetical protein; hypothetical protein complement(1647915..1648289) Stenotrophomonas maltophilia R551-3 6475328 YP_002027853.1 CDS Smal_1465 NC_011071.1 1648303 1648608 R PFAM: protein of unknown function UPF0044; KEGG: xac:XAC1730 hypothetical protein; hypothetical protein complement(1648303..1648608) Stenotrophomonas maltophilia R551-3 6475329 YP_002027854.1 CDS Smal_1466 NC_011071.1 1648674 1649306 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: xac:XAC1731 cell division protein; ribosomal RNA methyltransferase RrmJ/FtsJ 1648674..1649306 Stenotrophomonas maltophilia R551-3 6475330 YP_002027855.1 CDS Smal_1467 NC_011071.1 1649376 1651310 D KEGG: xac:XAC1732 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1649376..1651310 Stenotrophomonas maltophilia R551-3 6475331 YP_002027856.1 CDS Smal_1468 NC_011071.1 1651415 1651600 D KEGG: mfa:Mfla_1716 hypothetical protein; hypothetical protein 1651415..1651600 Stenotrophomonas maltophilia R551-3 6475332 YP_002027857.1 CDS Smal_1469 NC_011071.1 1652147 1653043 D KEGG: xcb:XC_2517 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 1652147..1653043 Stenotrophomonas maltophilia R551-3 6475333 YP_002027858.1 CDS miaA NC_011071.1 1653043 1653996 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1653043..1653996 Stenotrophomonas maltophilia R551-3 6475334 YP_002027859.1 CDS hfq NC_011071.1 1654093 1654368 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1654093..1654368 Stenotrophomonas maltophilia R551-3 6475335 YP_002027860.1 CDS Smal_1472 NC_011071.1 1654383 1655693 D TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: xcv:XCV1769 GTP-binding protein; GTP-binding proten HflX 1654383..1655693 Stenotrophomonas maltophilia R551-3 6475336 YP_002027861.1 CDS Smal_1473 NC_011071.1 1655791 1656291 D PFAM: CinA domain protein; KEGG: xac:XAC1737 hypothetical protein; CinA domain-containing protein 1655791..1656291 Stenotrophomonas maltophilia R551-3 6475337 YP_002027862.1 CDS Smal_1474 NC_011071.1 1656323 1658008 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: xcb:XC_2511 ubiquinone biosynthesis protein; 2-polyprenylphenol 6-hydroxylase 1656323..1658008 Stenotrophomonas maltophilia R551-3 6475338 YP_002027863.1 CDS Smal_1475 NC_011071.1 1658228 1658863 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1658228..1658863 Stenotrophomonas maltophilia R551-3 6475339 YP_002027864.1 CDS recA NC_011071.1 1659068 1660105 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1659068..1660105 Stenotrophomonas maltophilia R551-3 6475340 YP_002027865.1 CDS recX NC_011071.1 1660216 1660707 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1660216..1660707 Stenotrophomonas maltophilia R551-3 6475341 YP_002027866.1 CDS alaS NC_011071.1 1660817 1663465 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1660817..1663465 Stenotrophomonas maltophilia R551-3 6475342 YP_002027867.1 CDS Smal_1479 NC_011071.1 1663613 1663816 D PFAM: carbon storage regulator; KEGG: xom:XOO_2790 carbon storage regulator; carbon starvation protein CstA 1663613..1663816 Stenotrophomonas maltophilia R551-3 6475343 YP_002027868.1 CDS Smal_1480 NC_011071.1 1664108 1666438 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: prw:PsycPRwf_2339 TonB-dependent receptor; TonB-dependent receptor complement(1664108..1666438) Stenotrophomonas maltophilia R551-3 6475345 YP_002027869.1 CDS Smal_1481 NC_011071.1 1666578 1667516 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator; AraC family transcriptional regulator 1666578..1667516 Stenotrophomonas maltophilia R551-3 6475346 YP_002027870.1 CDS Smal_1482 NC_011071.1 1667628 1669799 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor; TonB-dependent siderophore receptor 1667628..1669799 Stenotrophomonas maltophilia R551-3 6475347 YP_002027871.1 CDS Smal_1483 NC_011071.1 1669817 1670923 R PFAM: protein of unknown function DUF218; KEGG: ava:Ava_0399 protein of unknown function DUF218; hypothetical protein complement(1669817..1670923) Stenotrophomonas maltophilia R551-3 6475348 YP_002027872.1 CDS Smal_1484 NC_011071.1 1670923 1673418 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_0316 TonB-dependent receptor; TonB-dependent receptor plug complement(1670923..1673418) Stenotrophomonas maltophilia R551-3 6475349 YP_002027873.1 CDS Smal_1485 NC_011071.1 1673505 1674662 R PFAM: ROK family protein; KEGG: yps:YPTB2018 putative transcriptional regulatory protein; ROK family protein complement(1673505..1674662) Stenotrophomonas maltophilia R551-3 6475350 YP_002027874.1 CDS Smal_1486 NC_011071.1 1674659 1676017 R KEGG: xom:XOO_3493 hypothetical protein; hypothetical protein complement(1674659..1676017) Stenotrophomonas maltophilia R551-3 6475351 YP_002027875.1 CDS Smal_1487 NC_011071.1 1676078 1676560 D KEGG: xcv:XCV0097 putative secreted protein; hypothetical protein 1676078..1676560 Stenotrophomonas maltophilia R551-3 6475352 YP_002027876.1 CDS Smal_1488 NC_011071.1 1676612 1679284 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(1676612..1679284) Stenotrophomonas maltophilia R551-3 6475353 YP_002027877.1 CDS Smal_1489 NC_011071.1 1679529 1679828 R KEGG: pde:Pden_3453 hypothetical protein; hypothetical protein complement(1679529..1679828) Stenotrophomonas maltophilia R551-3 6475354 YP_002027878.1 CDS Smal_1490 NC_011071.1 1679967 1680482 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: xac:XAC4129 ECF sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1679967..1680482 Stenotrophomonas maltophilia R551-3 6475355 YP_002027879.1 CDS Smal_1491 NC_011071.1 1680479 1681501 D PFAM: FecR protein; KEGG: xac:XAC4130 transmembrane sensor; anti-FecI sigma factor FecR 1680479..1681501 Stenotrophomonas maltophilia R551-3 6475356 YP_002027880.1 CDS Smal_1492 NC_011071.1 1681643 1684576 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1341 TonB-dependent outer membrane receptor; TonB-dependent receptor 1681643..1684576 Stenotrophomonas maltophilia R551-3 6475357 YP_002027881.1 CDS Smal_1493 NC_011071.1 1684587 1686182 D KEGG: gox:GOX0675 alkaline phosphatase; alkaline phosphatase 1684587..1686182 Stenotrophomonas maltophilia R551-3 6475358 YP_002027882.1 CDS Smal_1494 NC_011071.1 1686283 1688391 R KEGG: xcb:XC_1121 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; phosphocholine-specific phospholipase C complement(1686283..1688391) Stenotrophomonas maltophilia R551-3 6475359 YP_002027883.1 CDS Smal_1495 NC_011071.1 1688400 1690778 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1122 TonB-dependent receptor; TonB-dependent receptor complement(1688400..1690778) Stenotrophomonas maltophilia R551-3 6475360 YP_002027884.1 CDS Smal_1496 NC_011071.1 1690897 1691823 R KEGG: oan:Oant_0690 cytochrome c class I; cytochrome c class I complement(1690897..1691823) Stenotrophomonas maltophilia R551-3 6475361 YP_002027885.1 CDS Smal_1497 NC_011071.1 1691820 1693166 R PFAM: cytochrome c class I; KEGG: oan:Oant_0689 gluconate 2-dehydrogenase (acceptor); gluconate 2-dehydrogenase complement(1691820..1693166) Stenotrophomonas maltophilia R551-3 6475362 YP_002027886.1 CDS Smal_1498 NC_011071.1 1693352 1694470 D PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_4003 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 1693352..1694470 Stenotrophomonas maltophilia R551-3 6475363 YP_002027887.1 CDS Smal_1499 NC_011071.1 1694552 1695691 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4038 transporter, putative; major facilitator superfamily protein complement(1694552..1695691) Stenotrophomonas maltophilia R551-3 6475364 YP_002027888.1 CDS Smal_1500 NC_011071.1 1695876 1696571 D KEGG: pap:PSPA7_2469 esterase/lipase/thioesterase domain-containing protein; esterase/lipase/thioesterase domain-containing protein 1695876..1696571 Stenotrophomonas maltophilia R551-3 6475365 YP_002027889.1 CDS Smal_1501 NC_011071.1 1696719 1698917 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_33680 ferripyoverdine receptor; TonB-dependent siderophore receptor 1696719..1698917 Stenotrophomonas maltophilia R551-3 6475366 YP_002027890.1 CDS Smal_1502 NC_011071.1 1699034 1699735 R PFAM: Pirin domain protein; KEGG: xcv:XCV1780 putative pirin-related protein; Pirin domain-containing protein complement(1699034..1699735) Stenotrophomonas maltophilia R551-3 6475367 YP_002027891.1 CDS Smal_1503 NC_011071.1 1699876 1700796 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xom:XOO_2783 transcriptional regulator; LysR family transcriptional regulator 1699876..1700796 Stenotrophomonas maltophilia R551-3 6475368 YP_002027892.1 CDS Smal_1504 NC_011071.1 1701810 1702736 R KEGG: xcv:XCV1783 hypothetical protein; hypothetical protein complement(1701810..1702736) Stenotrophomonas maltophilia R551-3 6475372 YP_002027893.1 CDS Smal_1505 NC_011071.1 1702733 1703542 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(1702733..1703542) Stenotrophomonas maltophilia R551-3 6475373 YP_002027894.1 CDS Smal_1506 NC_011071.1 1703649 1704317 R PFAM: protein of unknown function DUF1275; KEGG: xcv:XCV1785 hypothetical protein; hypothetical protein complement(1703649..1704317) Stenotrophomonas maltophilia R551-3 6475374 YP_002027895.1 CDS Smal_1507 NC_011071.1 1704330 1704836 R KEGG: xcv:XCV1786 putative secreted protein; hypothetical protein complement(1704330..1704836) Stenotrophomonas maltophilia R551-3 6475375 YP_002027896.1 CDS Smal_1508 NC_011071.1 1704833 1706233 R PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: xac:XAC1756 hypothetical protein; PhoH family protein complement(1704833..1706233) Stenotrophomonas maltophilia R551-3 6475376 YP_002027897.1 CDS Smal_1509 NC_011071.1 1706318 1706797 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xom:XOO_2777 bacterioferritin comigratory protein; alkyl hydroperoxide reductase complement(1706318..1706797) Stenotrophomonas maltophilia R551-3 6475377 YP_002027898.1 CDS Smal_1510 NC_011071.1 1706876 1707436 R PFAM: amino acid-binding ACT domain protein; KEGG: xcb:XC_2494 glycine cleavage system transcriptional repressor; amino acid-binding ACT domain-containing protein complement(1706876..1707436) Stenotrophomonas maltophilia R551-3 6475378 YP_002027899.1 CDS Smal_1511 NC_011071.1 1707601 1708494 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1707601..1708494 Stenotrophomonas maltophilia R551-3 6475379 YP_002027900.1 CDS Smal_1512 NC_011071.1 1708527 1709042 D KEGG: xac:XAC1761 hypothetical protein; hypothetical protein 1708527..1709042 Stenotrophomonas maltophilia R551-3 6475380 YP_002027901.1 CDS Smal_1513 NC_011071.1 1709207 1709530 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: xcb:XC_2491 ferredoxin; 4Fe-4S ferredoxin complement(1709207..1709530) Stenotrophomonas maltophilia R551-3 6475381 YP_002027902.1 CDS Smal_1514 NC_011071.1 1709722 1711146 D KEGG: xcv:XCV1809 sugar porter family protein; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 1709722..1711146 Stenotrophomonas maltophilia R551-3 6475382 YP_002027903.1 CDS Smal_1515 NC_011071.1 1711792 1713177 D KEGG: xcv:XCV1814 polynucleotide adenylyltransferase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 1711792..1713177 Stenotrophomonas maltophilia R551-3 6475384 YP_002027904.1 CDS Smal_1516 NC_011071.1 1713181 1713666 D KEGG: xcb:XC_2469 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1713181..1713666 Stenotrophomonas maltophilia R551-3 6475385 YP_002027905.1 CDS panB NC_011071.1 1713701 1714516 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1713701..1714516 Stenotrophomonas maltophilia R551-3 6475386 YP_002027906.1 CDS panC NC_011071.1 1714513 1715352 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1714513..1715352 Stenotrophomonas maltophilia R551-3 6475387 YP_002027907.1 CDS Smal_1519 NC_011071.1 1715424 1715921 D hypothetical protein 1715424..1715921 Stenotrophomonas maltophilia R551-3 6475388 YP_002027908.1 CDS Smal_1520 NC_011071.1 1716009 1716389 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1716009..1716389 Stenotrophomonas maltophilia R551-3 6475389 YP_002027909.1 CDS pgi NC_011071.1 1716386 1717900 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1716386..1717900 Stenotrophomonas maltophilia R551-3 6475390 YP_002027910.1 CDS Smal_1522 NC_011071.1 1718010 1718579 R PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: xac:XAC1797 two-component system regulatory protein; two component Fis family transcriptional regulator complement(1718010..1718579) Stenotrophomonas maltophilia R551-3 6475391 YP_002027911.1 CDS Smal_1523 NC_011071.1 1718576 1719802 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_2456 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase complement(1718576..1719802) Stenotrophomonas maltophilia R551-3 6475392 YP_002027912.1 CDS ispG NC_011071.1 1719917 1721182 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1719917..1721182 Stenotrophomonas maltophilia R551-3 6475393 YP_002027913.1 CDS Smal_1525 NC_011071.1 1721163 1721912 D PFAM: phosphoesterase PA-phosphatase related; KEGG: xcv:XCV1830 putative membrane-associated phosphoesterase; PA-phosphatase-like phosphoesterase 1721163..1721912 Stenotrophomonas maltophilia R551-3 6475394 YP_002027914.1 CDS Smal_1526 NC_011071.1 1722113 1722760 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: xcb:XC_2096 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator 1722113..1722760 Stenotrophomonas maltophilia R551-3 6475395 YP_002027915.1 CDS Smal_1527 NC_011071.1 1723093 1723752 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1723093..1723752) Stenotrophomonas maltophilia R551-3 6475396 YP_002027916.1 CDS Smal_1528 NC_011071.1 1723989 1725905 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1723989..1725905) Stenotrophomonas maltophilia R551-3 6475397 YP_002027917.1 CDS Smal_1529 NC_011071.1 1725964 1726689 R TIGRFAM: 6-phosphogluconolactonase; KEGG: xcb:XC_1975 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(1725964..1726689) Stenotrophomonas maltophilia R551-3 6475398 YP_002027918.1 CDS glk NC_011071.1 1726686 1727693 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(1726686..1727693) Stenotrophomonas maltophilia R551-3 6475399 YP_002027919.1 CDS Smal_1531 NC_011071.1 1727690 1729126 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1727690..1729126) Stenotrophomonas maltophilia R551-3 6475400 YP_002027920.1 CDS Smal_1532 NC_011071.1 1729479 1730561 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: xcb:XC_1978 sugar ABC transporter ATP-binding protein; ABC transporter-like protein 1729479..1730561 Stenotrophomonas maltophilia R551-3 6475401 YP_002027921.1 CDS Smal_1533 NC_011071.1 1730666 1731541 R TIGRFAM: folate-binding protein YgfZ; PFAM: Glycine cleavage T-protein barrel; KEGG: xom:XOO_2189 hypothetical protein; folate-binding protein YgfZ complement(1730666..1731541) Stenotrophomonas maltophilia R551-3 6475402 YP_002027922.1 CDS Smal_1534 NC_011071.1 1731581 1731751 D PFAM: protein of unknown function DUF1674; KEGG: xcb:XC_1979 hypothetical protein; hypothetical protein 1731581..1731751 Stenotrophomonas maltophilia R551-3 6475403 YP_002027923.1 CDS Smal_1535 NC_011071.1 1731808 1732200 D TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: xfn:XfasM23_0342 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 1731808..1732200 Stenotrophomonas maltophilia R551-3 6475404 YP_002027924.1 CDS Smal_1536 NC_011071.1 1732197 1732583 D TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: xac:XAC2076 succinate dehydrogenase membrane anchor subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 1732197..1732583 Stenotrophomonas maltophilia R551-3 6475405 YP_002027925.1 CDS sdhA NC_011071.1 1732615 1734405 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1732615..1734405 Stenotrophomonas maltophilia R551-3 6475406 YP_002027926.1 CDS sdhB NC_011071.1 1734472 1735257 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1734472..1735257 Stenotrophomonas maltophilia R551-3 6475407 YP_002027927.1 CDS Smal_1539 NC_011071.1 1735356 1735604 D PFAM: protein of unknown function DUF339; KEGG: xcb:XC_1986 hypothetical protein; hypothetical protein 1735356..1735604 Stenotrophomonas maltophilia R551-3 6475408 YP_002027928.1 CDS Smal_1540 NC_011071.1 1735555 1736004 D KEGG: xcv:XCV2247 hypothetical protein; hypothetical protein 1735555..1736004 Stenotrophomonas maltophilia R551-3 6475409 YP_002027929.1 CDS Smal_1541 NC_011071.1 1736028 1737269 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: xcb:XC_1988 lipoprotein releasing system transmembrane protein; lipoprotein releasing system transmembrane protein LolC/E family 1736028..1737269 Stenotrophomonas maltophilia R551-3 6475410 YP_002027930.1 CDS Smal_1542 NC_011071.1 1737262 1737975 D KEGG: xom:XOO_2181 ABC transporter ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1737262..1737975 Stenotrophomonas maltophilia R551-3 6475411 YP_002027931.1 CDS Smal_1543 NC_011071.1 1738164 1738613 D KEGG: xcb:XC_1692 hypothetical protein; hypothetical protein 1738164..1738613 Stenotrophomonas maltophilia R551-3 6475412 YP_002027932.1 CDS Smal_1544 NC_011071.1 1738688 1738957 R PFAM: Fe(II) trafficking protein YggX; KEGG: xac:XAC2554 hypothetical protein; hypothetical protein complement(1738688..1738957) Stenotrophomonas maltophilia R551-3 6475413 YP_002027933.1 CDS Smal_1545 NC_011071.1 1738963 1740087 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: xcv:XCV2752 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1738963..1740087) Stenotrophomonas maltophilia R551-3 6475414 YP_002027934.1 CDS Smal_1546 NC_011071.1 1740171 1741496 R KEGG: xcb:XC_1695 cell division protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(1740171..1741496) Stenotrophomonas maltophilia R551-3 6475415 YP_002027935.1 CDS Smal_1547 NC_011071.1 1741626 1741925 D KEGG: xcv:XCV2735 hypothetical protein; hypothetical protein 1741626..1741925 Stenotrophomonas maltophilia R551-3 6475416 YP_002027936.1 CDS Smal_1548 NC_011071.1 1742276 1744168 R molecular chaperone; heat shock protein 90 complement(1742276..1744168) Stenotrophomonas maltophilia R551-3 6475417 YP_002027937.1 CDS Smal_1549 NC_011071.1 1744811 1745389 D TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: xcv:XCV2710 putative methyltransferase; methyltransferase 1744811..1745389 Stenotrophomonas maltophilia R551-3 6475418 YP_002027938.1 CDS coaD NC_011071.1 1745416 1745925 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1745416..1745925 Stenotrophomonas maltophilia R551-3 6475419 YP_002027939.1 CDS Smal_1551 NC_011071.1 1745987 1746478 D KEGG: xcv:XCV2708 putative secreted protein; hypothetical protein 1745987..1746478 Stenotrophomonas maltophilia R551-3 6475420 YP_002027940.1 CDS Smal_1552 NC_011071.1 1746611 1746892 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: xac:XAC2524 ferredoxin; 4Fe-4S ferredoxin 1746611..1746892 Stenotrophomonas maltophilia R551-3 6475421 YP_002027941.1 CDS Smal_1553 NC_011071.1 1746889 1748619 D KEGG: xcv:XCV2706 gamma-glutamyltranspeptidase precursor; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1746889..1748619 Stenotrophomonas maltophilia R551-3 6475422 YP_002027942.1 CDS Smal_1554 NC_011071.1 1748741 1749628 D PFAM: beta-lactamase domain protein; KEGG: pap:PSPA7_0898 hypothetical protein; beta-lactamase domain-containing protein 1748741..1749628 Stenotrophomonas maltophilia R551-3 6475423 YP_002027943.1 CDS Smal_1555 NC_011071.1 1749725 1750018 R PFAM: PsiF repeat protein; KEGG: pfo:PflO1_0574 PsiF; PsiF repeat-containing protein complement(1749725..1750018) Stenotrophomonas maltophilia R551-3 6475424 YP_002027944.1 CDS upp NC_011071.1 1750162 1750794 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1750162..1750794) Stenotrophomonas maltophilia R551-3 6475425 YP_002027945.1 CDS Smal_1557 NC_011071.1 1750964 1753525 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV2702 TonB-dependent outer membrane receptor; TonB-dependent receptor 1750964..1753525 Stenotrophomonas maltophilia R551-3 6475426 YP_002027946.1 CDS Smal_1558 NC_011071.1 1753525 1754640 D PFAM: NHL repeat containing protein; KEGG: xcb:XC_1730 putative phytase precursor; NHL repeat containing protein 1753525..1754640 Stenotrophomonas maltophilia R551-3 6475427 YP_002027947.1 CDS Smal_1559 NC_011071.1 1754637 1756004 D PFAM: metallophosphoesterase; KEGG: xac:XAC2518 hypothetical protein; metallophosphoesterase 1754637..1756004 Stenotrophomonas maltophilia R551-3 6475428 YP_002027948.1 CDS Smal_1560 NC_011071.1 1756016 1756627 D PFAM: Inorganic pyrophosphatase; KEGG: oan:Oant_1233 inorganic diphosphatase; inorganic diphosphatase 1756016..1756627 Stenotrophomonas maltophilia R551-3 6475429 YP_002027949.1 CDS Smal_1561 NC_011071.1 1756647 1757231 R KEGG: pap:PSPA7_0464 hypothetical protein; hypothetical protein complement(1756647..1757231) Stenotrophomonas maltophilia R551-3 6475430 YP_002027950.1 CDS Smal_1562 NC_011071.1 1757341 1758756 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: xcb:XC_2803 photolyase-like protein; deoxyribodipyrimidine photo-lyase 1757341..1758756 Stenotrophomonas maltophilia R551-3 6475431 YP_002027951.1 CDS Smal_1563 NC_011071.1 1758896 1759591 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: xcb:XC_2802 outer membrane protein; OmpA/MotB domain-containing protein 1758896..1759591 Stenotrophomonas maltophilia R551-3 6475432 YP_002027952.1 CDS Smal_1564 NC_011071.1 1759834 1760865 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV1538 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1759834..1760865) Stenotrophomonas maltophilia R551-3 6475433 YP_002027953.1 CDS Smal_1565 NC_011071.1 1761013 1761240 D hypothetical protein 1761013..1761240 Stenotrophomonas maltophilia R551-3 6475434 YP_002027954.1 CDS Smal_1566 NC_011071.1 1761237 1762007 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_2800 aklaviketone reductase; short-chain dehydrogenase/reductase SDR 1761237..1762007 Stenotrophomonas maltophilia R551-3 6475435 YP_002027955.1 CDS Smal_1567 NC_011071.1 1762099 1763325 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_2799 RND multidrug efflux membrane fusion protein; RND family efflux transporter MFP subunit 1762099..1763325 Stenotrophomonas maltophilia R551-3 6475436 YP_002027956.1 CDS Smal_1568 NC_011071.1 1763438 1766608 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xac:XAC1483 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1763438..1766608 Stenotrophomonas maltophilia R551-3 6475437 YP_002027957.1 CDS Smal_1569 NC_011071.1 1766673 1767410 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_2797 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1766673..1767410 Stenotrophomonas maltophilia R551-3 6475438 YP_002027958.1 CDS Smal_1570 NC_011071.1 1767404 1768825 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xcv:XCV1543 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1767404..1768825 Stenotrophomonas maltophilia R551-3 6475439 YP_002027959.1 CDS Smal_1571 NC_011071.1 1768991 1769254 D hypothetical protein 1768991..1769254 Stenotrophomonas maltophilia R551-3 6475440 YP_002027960.1 CDS Smal_1572 NC_011071.1 1769274 1770128 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_0717 hypothetical protein; endonuclease/exonuclease/phosphatase complement(1769274..1770128) Stenotrophomonas maltophilia R551-3 6475441 YP_002027961.1 CDS Smal_1573 NC_011071.1 1770537 1771763 D PFAM: cytochrome P450; KEGG: sen:SACE_2802 putative cytochrome P450 hydroxylase; cytochrome P450 1770537..1771763 Stenotrophomonas maltophilia R551-3 6475442 YP_002027962.1 CDS Smal_1574 NC_011071.1 1771835 1772071 R hypothetical protein complement(1771835..1772071) Stenotrophomonas maltophilia R551-3 6475443 YP_002027963.1 CDS Smal_1575 NC_011071.1 1772159 1772863 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2869 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1772159..1772863) Stenotrophomonas maltophilia R551-3 6475444 YP_002027964.1 CDS Smal_1576 NC_011071.1 1772869 1773741 R Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA complement(1772869..1773741) Stenotrophomonas maltophilia R551-3 6475445 YP_002027965.1 CDS Smal_1577 NC_011071.1 1773847 1774830 R hypothetical protein complement(1773847..1774830) Stenotrophomonas maltophilia R551-3 6475446 YP_002027966.1 CDS Smal_1578 NC_011071.1 1774893 1776911 R PFAM: PGAP1 family protein; KEGG: pla:Plav_3441 hypothetical protein; PGAP1 family protein complement(1774893..1776911) Stenotrophomonas maltophilia R551-3 6475447 YP_002027967.1 CDS Smal_1579 NC_011071.1 1777065 1777526 D KEGG: xom:XOO_4078 hypothetical protein; hypothetical protein 1777065..1777526 Stenotrophomonas maltophilia R551-3 6475448 YP_002027968.1 CDS Smal_1580 NC_011071.1 1777537 1778019 R KEGG: vei:Veis_1423 hypothetical protein; hypothetical protein complement(1777537..1778019) Stenotrophomonas maltophilia R551-3 6475449 YP_002027969.1 CDS Smal_1581 NC_011071.1 1778047 1778493 R KEGG: yen:YE2300 hypothetical protein; hypothetical protein complement(1778047..1778493) Stenotrophomonas maltophilia R551-3 6475450 YP_002027970.1 CDS Smal_1582 NC_011071.1 1778680 1780185 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: xcv:XCV0960 extracellular protease precursor; peptidase S8/S53 subtilisin kexin sedolisin complement(1778680..1780185) Stenotrophomonas maltophilia R551-3 6475451 YP_002027971.1 CDS Smal_1583 NC_011071.1 1780557 1781801 R PFAM: secretion protein HlyD family protein; KEGG: xfa:XF1216 colicin V secretion protein; secretion protein HlyD family protein complement(1780557..1781801) Stenotrophomonas maltophilia R551-3 6475452 YP_002027972.1 CDS Smal_1584 NC_011071.1 1781798 1783864 R PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: xom:XOO_1681 colicin V secretion ABC transporter ATP-binding protein; ABC transporter-like protein complement(1781798..1783864) Stenotrophomonas maltophilia R551-3 6475453 YP_002027973.1 CDS Smal_1585 NC_011071.1 1784079 1784705 R PFAM: Abortive infection protein; KEGG: ypy:YPK_0793 abortive infection protein; abortive infection protein complement(1784079..1784705) Stenotrophomonas maltophilia R551-3 6475454 YP_002027974.1 CDS Smal_1586 NC_011071.1 1784769 1784963 R hypothetical protein complement(1784769..1784963) Stenotrophomonas maltophilia R551-3 6475455 YP_002027975.1 CDS Smal_1587 NC_011071.1 1786141 1787160 D hypothetical protein 1786141..1787160 Stenotrophomonas maltophilia R551-3 6475457 YP_002027976.1 CDS Smal_1588 NC_011071.1 1787236 1787667 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_2792 probable acetyltransferase; N-acetyltransferase GCN5 1787236..1787667 Stenotrophomonas maltophilia R551-3 6475458 YP_002027977.1 CDS Smal_1589 NC_011071.1 1787808 1788380 D hypothetical protein 1787808..1788380 Stenotrophomonas maltophilia R551-3 6475459 YP_002027978.1 CDS smpB NC_011071.1 1788506 1789009 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1788506..1789009) Stenotrophomonas maltophilia R551-3 6475460 YP_002027979.1 CDS Smal_1591 NC_011071.1 1789067 1789492 D PFAM: cyclase/dehydrase; KEGG: xcv:XCV1557 hypothetical protein; cyclase/dehydrase 1789067..1789492 Stenotrophomonas maltophilia R551-3 6475461 YP_002027980.1 CDS Smal_1592 NC_011071.1 1789496 1789753 D PFAM: protein of unknown function UPF0125; KEGG: xcb:XC_2769 hypothetical protein; hypothetical protein 1789496..1789753 Stenotrophomonas maltophilia R551-3 6475462 YP_002027981.1 CDS Smal_1593 NC_011071.1 1789790 1790182 R PFAM: SmpA/OmlA domain protein; KEGG: xac:XAC1516 outer membrane protein; SmpA/OmlA domain-containing protein complement(1789790..1790182) Stenotrophomonas maltophilia R551-3 6475463 YP_002027982.1 CDS Smal_1594 NC_011071.1 1790286 1790693 D PFAM: ferric-uptake regulator; KEGG: xac:XAC1517 ferric uptake regulator; Fur family ferric uptake regulator 1790286..1790693 Stenotrophomonas maltophilia R551-3 6475464 YP_002027983.1 CDS Smal_1595 NC_011071.1 1790810 1792066 R PFAM: lipolytic protein G-D-S-L family; KEGG: pau:PA14_23690 putative secreted protein; G-D-S-L family lipolytic protein complement(1790810..1792066) Stenotrophomonas maltophilia R551-3 6475465 YP_002027984.1 CDS Smal_1596 NC_011071.1 1792164 1793081 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA3124 probable transcriptional regulator; LysR family transcriptional regulator 1792164..1793081 Stenotrophomonas maltophilia R551-3 6475466 YP_002027985.1 CDS Smal_1597 NC_011071.1 1793206 1794867 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: xcc:XCC1471 recombination protein N; DNA repair protein RecN complement(1793206..1794867) Stenotrophomonas maltophilia R551-3 6475467 YP_002027986.1 CDS hrcA NC_011071.1 1794982 1796046 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1794982..1796046 Stenotrophomonas maltophilia R551-3 6475468 YP_002027987.1 CDS Smal_1599 NC_011071.1 1796110 1796625 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1796110..1796625 Stenotrophomonas maltophilia R551-3 6475469 YP_002027988.1 CDS dnaK NC_011071.1 1796806 1798731 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1796806..1798731 Stenotrophomonas maltophilia R551-3 6475470 YP_002027989.1 CDS Smal_1601 NC_011071.1 1798886 1800016 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1798886..1800016 Stenotrophomonas maltophilia R551-3 6475471 YP_002027990.1 CDS Smal_1602 NC_011071.1 1800109 1800906 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psa:PST_1310 AraC protein; AraC family transcriptional regulator complement(1800109..1800906) Stenotrophomonas maltophilia R551-3 6475472 YP_002027991.1 CDS Smal_1603 NC_011071.1 1800979 1802178 D PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_1146 major facilitator superfamily MFS_1; major facilitator superfamily protein 1800979..1802178 Stenotrophomonas maltophilia R551-3 6475473 YP_002027992.1 CDS Smal_1604 NC_011071.1 1802823 1803731 D TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: xcv:XCV1566 pyridoxine kinase; pyridoxal kinase 1802823..1803731 Stenotrophomonas maltophilia R551-3 6475474 YP_002027993.1 CDS Smal_1605 NC_011071.1 1803728 1804852 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1803728..1804852 Stenotrophomonas maltophilia R551-3 6475475 YP_002027994.1 CDS Smal_1606 NC_011071.1 1805084 1805278 R KEGG: xcb:XC_2759 hypothetical protein; hypothetical protein complement(1805084..1805278) Stenotrophomonas maltophilia R551-3 6475476 YP_002027995.1 CDS Smal_1607 NC_011071.1 1805350 1807122 R KEGG: xcb:XC_2754 ABC transporter ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter family, fused ATPase and inner membrane subunits complement(1805350..1807122) Stenotrophomonas maltophilia R551-3 6475477 YP_002027996.1 CDS Smal_1608 NC_011071.1 1807115 1807720 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: xcv:XCV1574 hypothetical protein; hypothetical protein complement(1807115..1807720) Stenotrophomonas maltophilia R551-3 6475478 YP_002027997.1 CDS Smal_1609 NC_011071.1 1807752 1808738 R KEGG: azo:azo0076 hypothetical protein; hypothetical protein complement(1807752..1808738) Stenotrophomonas maltophilia R551-3 6475479 YP_002027998.1 CDS Smal_1610 NC_011071.1 1808735 1809358 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1808735..1809358) Stenotrophomonas maltophilia R551-3 6475480 YP_002027999.1 CDS Smal_1611 NC_011071.1 1809501 1812341 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: cps:CPS_4411 GAF domain/GGDEF domain/EAL domain protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 1809501..1812341 Stenotrophomonas maltophilia R551-3 6475481 YP_002028000.1 CDS Smal_1612 NC_011071.1 1812361 1812954 R PFAM: conserved hypothetical protein; KEGG: xcb:XC_2752 hypothetical protein; hypothetical protein complement(1812361..1812954) Stenotrophomonas maltophilia R551-3 6475482 YP_002028001.1 CDS Smal_1613 NC_011071.1 1813145 1814641 R PFAM: aminotransferase class-III; KEGG: xcv:XCV2698 putative ornithine/acetylornithine aminotransferase; class III aminotransferase complement(1813145..1814641) Stenotrophomonas maltophilia R551-3 6475483 YP_002028002.1 CDS queA NC_011071.1 1814888 1815919 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1814888..1815919 Stenotrophomonas maltophilia R551-3 6475484 YP_002028003.1 CDS tgt NC_011071.1 1816046 1817176 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1816046..1817176 Stenotrophomonas maltophilia R551-3 6475485 YP_002028004.1 CDS yajC NC_011071.1 1817311 1817655 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1817311..1817655 Stenotrophomonas maltophilia R551-3 6475486 YP_002028005.1 CDS secD NC_011071.1 1817717 1819573 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1817717..1819573 Stenotrophomonas maltophilia R551-3 6475487 YP_002028006.1 CDS secF NC_011071.1 1819589 1820569 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1819589..1820569 Stenotrophomonas maltophilia R551-3 6475488 YP_002028007.1 CDS Smal_1619 NC_011071.1 1821286 1822545 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 1821286..1822545 Stenotrophomonas maltophilia R551-3 6475489 YP_002028008.1 CDS Smal_1620 NC_011071.1 1822657 1824726 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xoo:XOO2725 hypothetical protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1822657..1824726) Stenotrophomonas maltophilia R551-3 6475490 YP_002028009.1 CDS Smal_1621 NC_011071.1 1824818 1826002 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_1825 hypothetical protein; hypothetical protein complement(1824818..1826002) Stenotrophomonas maltophilia R551-3 6475491 YP_002028010.1 CDS Smal_1622 NC_011071.1 1825999 1826547 R PFAM: YaeQ family protein; KEGG: xac:XAC2396 hypothetical protein; YaeQ family protein complement(1825999..1826547) Stenotrophomonas maltophilia R551-3 6475492 YP_002028011.1 CDS Smal_1623 NC_011071.1 1826671 1827549 D PFAM: pseudouridine synthase; KEGG: pae:PA2043 hypothetical protein; pseudouridine synthase 1826671..1827549 Stenotrophomonas maltophilia R551-3 6475493 YP_002028012.1 CDS Smal_1624 NC_011071.1 1827556 1828044 R PFAM: protein of unknown function DUF188; KEGG: xcb:XC_1827 hypothetical protein; hypothetical protein complement(1827556..1828044) Stenotrophomonas maltophilia R551-3 6475494 YP_002028013.1 CDS Smal_1625 NC_011071.1 1828346 1828555 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xac:XAC2395 major cold shock protein; cold-shock DNA-binding domain-containing protein 1828346..1828555 Stenotrophomonas maltophilia R551-3 6475495 YP_002028014.1 CDS Smal_1626 NC_011071.1 1828710 1829399 D PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV2591 glutathione transferase; glutathione S-transferase domain-containing protein 1828710..1829399 Stenotrophomonas maltophilia R551-3 6475496 YP_002028015.1 CDS Smal_1627 NC_011071.1 1829432 1830997 D PFAM: protein of unknown function UPF0061; KEGG: xcv:XCV2589 hypothetical protein; hypothetical protein 1829432..1830997 Stenotrophomonas maltophilia R551-3 6475497 YP_002028016.1 CDS Smal_1628 NC_011071.1 1831559 1832122 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1831559..1832122 Stenotrophomonas maltophilia R551-3 6475498 YP_002028017.1 CDS Smal_1629 NC_011071.1 1832265 1833641 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(1832265..1833641) Stenotrophomonas maltophilia R551-3 6475499 YP_002028018.1 CDS Smal_1630 NC_011071.1 1833796 1834875 R PFAM: conserved hypothetical protein; KEGG: xoo:XOO2200 hypothetical protein; hypothetical protein complement(1833796..1834875) Stenotrophomonas maltophilia R551-3 6475500 YP_002028019.1 CDS Smal_1631 NC_011071.1 1834978 1835853 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV2184 transcriptional regulator, LysR family; LysR family transcriptional regulator 1834978..1835853 Stenotrophomonas maltophilia R551-3 6475501 YP_002028020.1 CDS Smal_1632 NC_011071.1 1836182 1838065 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_1834 ABC transporter ATP-binding protein; ABC transporter-like protein 1836182..1838065 Stenotrophomonas maltophilia R551-3 6475502 YP_002028021.1 CDS Smal_1633 NC_011071.1 1838496 1839461 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 1838496..1839461 Stenotrophomonas maltophilia R551-3 6475503 YP_002028022.1 CDS Smal_1634 NC_011071.1 1839512 1839973 R PFAM: cytochrome c class I; KEGG: xoo:XOO2646 cytochrome c552; cytochrome c class I complement(1839512..1839973) Stenotrophomonas maltophilia R551-3 6475504 YP_002028023.1 CDS Smal_1635 NC_011071.1 1839983 1840372 R KEGG: xcv:XCV2229 putative cytochrome; putative cytochrome complement(1839983..1840372) Stenotrophomonas maltophilia R551-3 6475505 YP_002028024.1 CDS Smal_1636 NC_011071.1 1840579 1841730 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV2230 membrane fusion protein; RND family efflux transporter MFP subunit 1840579..1841730 Stenotrophomonas maltophilia R551-3 6475506 YP_002028025.1 CDS Smal_1637 NC_011071.1 1841727 1845248 D PFAM: acriflavin resistance protein; KEGG: xcv:XCV2231 RND superfamily protein; acriflavin resistance protein 1841727..1845248 Stenotrophomonas maltophilia R551-3 6475507 YP_002028026.1 CDS Smal_1638 NC_011071.1 1845245 1848325 D PFAM: acriflavin resistance protein; KEGG: xcb:XC_1972 transport protein; acriflavin resistance protein 1845245..1848325 Stenotrophomonas maltophilia R551-3 6475508 YP_002028027.1 CDS Smal_1639 NC_011071.1 1848518 1849750 R TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: xcb:XC_1917 pheromone shutdown protein; TraB family protein complement(1848518..1849750) Stenotrophomonas maltophilia R551-3 6475509 YP_002028028.1 CDS Smal_1640 NC_011071.1 1849743 1850273 R PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_1918 phosphinothricin N-acetyltransferase; N-acetyltransferase GCN5 complement(1849743..1850273) Stenotrophomonas maltophilia R551-3 6475510 YP_002028029.1 CDS Smal_1641 NC_011071.1 1850288 1851175 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xom:XOO_2045 beta-alanine synthetase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1850288..1851175) Stenotrophomonas maltophilia R551-3 6475511 YP_002028030.1 CDS Smal_1642 NC_011071.1 1851340 1852377 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: xcb:XC_1920 hypothetical protein; Agmatine deiminase complement(1851340..1852377) Stenotrophomonas maltophilia R551-3 6475512 YP_002028031.1 CDS Smal_1643 NC_011071.1 1852417 1852746 R KEGG: xom:XOO_2047 hypothetical protein; hypothetical protein complement(1852417..1852746) Stenotrophomonas maltophilia R551-3 6475513 YP_002028032.1 CDS rpmJ NC_011071.1 1852893 1853018 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(1852893..1853018) Stenotrophomonas maltophilia R551-3 6475514 YP_002028033.1 CDS cmk NC_011071.1 1853216 1853893 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1853216..1853893 Stenotrophomonas maltophilia R551-3 6475515 YP_002028034.1 CDS rpsA NC_011071.1 1854092 1855777 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1854092..1855777 Stenotrophomonas maltophilia R551-3 6475516 YP_002028035.1 CDS ihfB NC_011071.1 1855865 1856170 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1855865..1856170 Stenotrophomonas maltophilia R551-3 6475517 YP_002028036.1 CDS Smal_1648 NC_011071.1 1856248 1856532 D KEGG: xcb:XC_1926 hypothetical protein; hypothetical protein 1856248..1856532 Stenotrophomonas maltophilia R551-3 6475518 YP_002028037.1 CDS Smal_1649 NC_011071.1 1856539 1857717 D KEGG: xac:XAC2295 hypothetical protein; hypothetical protein 1856539..1857717 Stenotrophomonas maltophilia R551-3 6475519 YP_002028038.1 CDS Smal_1650 NC_011071.1 1857721 1858710 D PFAM: glycosyl transferase family 4; KEGG: xcc:XCC2190 lipopolysaccharide core biosynthesis protein; glycosyl transferase family protein 1857721..1858710 Stenotrophomonas maltophilia R551-3 6475520 YP_002028039.1 CDS Smal_1651 NC_011071.1 1858714 1860627 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: xcv:XCV2491 putative sugar epimerase; polysaccharide biosynthesis protein CapD 1858714..1860627 Stenotrophomonas maltophilia R551-3 6475521 YP_002028040.1 CDS Smal_1652 NC_011071.1 1860624 1861502 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: xcv:XCV2490 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 1860624..1861502 Stenotrophomonas maltophilia R551-3 6475522 YP_002028041.1 CDS Smal_1653 NC_011071.1 1861977 1863185 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1861977..1863185) Stenotrophomonas maltophilia R551-3 6475523 YP_002028042.1 CDS Smal_1654 NC_011071.1 1863322 1865694 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xcb:XC_2205 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(1863322..1865694) Stenotrophomonas maltophilia R551-3 6475524 YP_002028043.1 CDS Smal_1655 NC_011071.1 1865721 1866389 R PFAM: regulatory protein TetR; KEGG: xcb:XC_2204 transcriptional regulator TetR family; TetR family transcriptional regulator complement(1865721..1866389) Stenotrophomonas maltophilia R551-3 6475525 YP_002028044.1 CDS ndk NC_011071.1 1866758 1867183 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1866758..1867183 Stenotrophomonas maltophilia R551-3 6475526 YP_002028045.1 CDS Smal_1657 NC_011071.1 1867194 1868399 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: xac:XAC2016 hypothetical protein; radical SAM enzyme, Cfr family 1867194..1868399 Stenotrophomonas maltophilia R551-3 6475527 YP_002028046.1 CDS Smal_1658 NC_011071.1 1868386 1869171 D TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC2017 fimbrial biogenesis protein; type IV pilus biogenesis/stability protein PilW 1868386..1869171 Stenotrophomonas maltophilia R551-3 6475528 YP_002028047.1 CDS Smal_1659 NC_011071.1 1869190 1870059 D SMART: helix-turn-helix domain protein; KEGG: xcb:XC_2200 hypothetical protein; XRE family transcriptional regulator 1869190..1870059 Stenotrophomonas maltophilia R551-3 6475529 YP_002028048.1 CDS Smal_1660 NC_011071.1 1870125 1870763 D KEGG: xac:XAC2019 hypothetical protein; hypothetical protein 1870125..1870763 Stenotrophomonas maltophilia R551-3 6475530 YP_002028049.1 CDS Smal_1661 NC_011071.1 1870763 1871971 D TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: xcb:XC_2198 hypothetical protein; outer membrane assembly lipoprotein YfgL 1870763..1871971 Stenotrophomonas maltophilia R551-3 6475531 YP_002028050.1 CDS engA NC_011071.1 1871988 1873385 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1871988..1873385 Stenotrophomonas maltophilia R551-3 6475532 YP_002028051.1 CDS Smal_1663 NC_011071.1 1873524 1874306 R KEGG: bav:BAV1106 amino acid efflux protein; hypothetical protein complement(1873524..1874306) Stenotrophomonas maltophilia R551-3 6475533 YP_002028052.1 CDS Smal_1664 NC_011071.1 1874401 1875030 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA complement(1874401..1875030) Stenotrophomonas maltophilia R551-3 6475534 YP_002028053.1 CDS Smal_1665 NC_011071.1 1875105 1875920 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bav:BAV1107 AraC-family transcriptional regulator; AraC family transcriptional regulator complement(1875105..1875920) Stenotrophomonas maltophilia R551-3 6475535 YP_002028054.1 CDS Smal_1666 NC_011071.1 1876010 1877146 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1876010..1877146 Stenotrophomonas maltophilia R551-3 6475536 YP_002028055.1 CDS Smal_1668 NC_011071.1 1877587 1879419 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xcb:XC_1931 transport protein; potassium efflux system protein 1877587..1879419 Stenotrophomonas maltophilia R551-3 6475538 YP_002028056.1 CDS Smal_1669 NC_011071.1 1879646 1880524 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1879646..1880524 Stenotrophomonas maltophilia R551-3 6475539 YP_002028057.1 CDS Smal_1670 NC_011071.1 1881008 1882465 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1881008..1882465 Stenotrophomonas maltophilia R551-3 6475540 YP_002028058.1 CDS Smal_1671 NC_011071.1 1882465 1883049 D hypothetical protein 1882465..1883049 Stenotrophomonas maltophilia R551-3 6475541 YP_002028059.1 CDS guaA NC_011071.1 1883046 1884611 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1883046..1884611 Stenotrophomonas maltophilia R551-3 6475542 YP_002028060.1 CDS Smal_1673 NC_011071.1 1884692 1884904 R KEGG: psb:Psyr_0099 hypothetical protein; hypothetical protein complement(1884692..1884904) Stenotrophomonas maltophilia R551-3 6475543 YP_002028061.1 CDS Smal_1674 NC_011071.1 1884907 1886682 R PFAM: protein of unknown function DUF87; KEGG: mms:mma_0005 hypothetical protein; hypothetical protein complement(1884907..1886682) Stenotrophomonas maltophilia R551-3 6475544 YP_002028062.1 CDS Smal_1675 NC_011071.1 1886682 1887869 R KEGG: mms:mma_0004 hypothetical protein; hypothetical protein complement(1886682..1887869) Stenotrophomonas maltophilia R551-3 6475545 YP_002028063.1 CDS Smal_1676 NC_011071.1 1887911 1889320 R KEGG: bbt:BBta_p0034 hypothetical protein; hypothetical protein complement(1887911..1889320) Stenotrophomonas maltophilia R551-3 6475546 YP_002028064.1 CDS Smal_1677 NC_011071.1 1890089 1890445 R hypothetical protein complement(1890089..1890445) Stenotrophomonas maltophilia R551-3 6475547 YP_002028065.1 CDS Smal_1678 NC_011071.1 1890998 1891915 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_2436 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1890998..1891915) Stenotrophomonas maltophilia R551-3 6475548 YP_002028066.1 CDS Smal_1679 NC_011071.1 1892012 1892851 D PFAM: ThiJ/PfpI domain protein; KEGG: pfo:PflO1_2435 ThiJ/PfpI; ThiJ/PfpI domain-containing protein 1892012..1892851 Stenotrophomonas maltophilia R551-3 6475549 YP_002028067.1 CDS Smal_1680 NC_011071.1 1892949 1893686 D hypothetical protein 1892949..1893686 Stenotrophomonas maltophilia R551-3 6475550 YP_002028068.1 CDS Smal_1681 NC_011071.1 1893726 1895102 R KEGG: mmr:Mmar10_1918 peptidase M1, membrane alanine aminopeptidase; hypothetical protein complement(1893726..1895102) Stenotrophomonas maltophilia R551-3 6475551 YP_002028069.1 CDS Smal_1682 NC_011071.1 1895255 1896037 D TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpt:Bpet1600 putative oxidoreductase; 3-hydroxybutyrate dehydrogenase 1895255..1896037 Stenotrophomonas maltophilia R551-3 6475552 YP_002028070.1 CDS Smal_1683 NC_011071.1 1896110 1896568 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bur:Bcep18194_A3794 hypothetical protein; Activator of Hsp90 ATPase 1 family protein complement(1896110..1896568) Stenotrophomonas maltophilia R551-3 6475553 YP_002028071.1 CDS Smal_1684 NC_011071.1 1896571 1896885 R PFAM: regulatory protein ArsR; KEGG: lbi:LEPBI_I0212 putative transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1896571..1896885) Stenotrophomonas maltophilia R551-3 6475554 YP_002028072.1 CDS Smal_1685 NC_011071.1 1896897 1897352 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: afw:Anae109_3662 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein complement(1896897..1897352) Stenotrophomonas maltophilia R551-3 6475555 YP_002028073.1 CDS Smal_1686 NC_011071.1 1897516 1898040 D PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_C7217 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1897516..1898040 Stenotrophomonas maltophilia R551-3 6475556 YP_002028074.1 CDS Smal_1687 NC_011071.1 1898147 1898986 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bvi:Bcep1808_5648 short chain dehydrogenase; short chain dehydrogenase complement(1898147..1898986) Stenotrophomonas maltophilia R551-3 6475557 YP_002028075.1 CDS Smal_1688 NC_011071.1 1899089 1900039 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA1380 probable transcriptional regulator; AraC family transcriptional regulator 1899089..1900039 Stenotrophomonas maltophilia R551-3 6475558 YP_002028076.1 CDS Smal_1689 NC_011071.1 1900174 1900761 D PFAM: regulatory protein TetR; KEGG: bid:Bind_2880 transcriptional regulator, TetR family; TetR family transcriptional regulator 1900174..1900761 Stenotrophomonas maltophilia R551-3 6475559 YP_002028077.1 CDS Smal_1690 NC_011071.1 1900851 1901351 D KEGG: fjo:Fjoh_3894 hypothetical protein; hypothetical protein 1900851..1901351 Stenotrophomonas maltophilia R551-3 6475560 YP_002028078.1 CDS Smal_1691 NC_011071.1 1901370 1902614 R hypothetical protein complement(1901370..1902614) Stenotrophomonas maltophilia R551-3 6475561 YP_002028079.1 CDS Smal_1692 NC_011071.1 1902738 1903739 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bac:BamMC406_4864 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1902738..1903739) Stenotrophomonas maltophilia R551-3 6475562 YP_002028080.1 CDS Smal_1693 NC_011071.1 1904057 1906633 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_C0393 putative TonB-dependent siderophore receptor; TonB-dependent receptor 1904057..1906633 Stenotrophomonas maltophilia R551-3 6475563 YP_002028081.1 CDS Smal_1694 NC_011071.1 1906715 1907296 D PFAM: NADPH-dependent FMN reductase; KEGG: pfo:PflO1_3915 FMN reductase; FMN reductase 1906715..1907296 Stenotrophomonas maltophilia R551-3 6475564 YP_002028082.1 CDS Smal_1695 NC_011071.1 1907454 1907816 D KEGG: bja:bll1287 hypothetical protein; hypothetical protein 1907454..1907816 Stenotrophomonas maltophilia R551-3 6475565 YP_002028083.1 CDS Smal_1696 NC_011071.1 1907831 1908808 D PFAM: Luciferase-like monooxygenase; KEGG: bmn:BMA10247_A0562 luciferase-like monooxygenase; luciferase-like monooxygenase 1907831..1908808 Stenotrophomonas maltophilia R551-3 6475566 YP_002028084.1 CDS Smal_1697 NC_011071.1 1908827 1910170 D KEGG: bur:Bcep18194_B1532 flavin-dependent oxidoreductase; flavin-dependent oxidoreductase 1908827..1910170 Stenotrophomonas maltophilia R551-3 6475567 YP_002028085.1 CDS Smal_1698 NC_011071.1 1910175 1911395 D KEGG: oan:Oant_4353 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1910175..1911395 Stenotrophomonas maltophilia R551-3 6475568 YP_002028086.1 CDS Smal_1699 NC_011071.1 1911392 1911943 D PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_L_2808 hypothetical protein; N-acetyltransferase GCN5 1911392..1911943 Stenotrophomonas maltophilia R551-3 6475569 YP_002028087.1 CDS Smal_1700 NC_011071.1 1911940 1913685 D KEGG: atc:AGR_L_2810 polar amino acid transport system permease proetin / polar amino acid transport system ATP-binding proetin; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; SMART: AAA ATPase; polar amino acid ABC transporter inner membrane subunit 1911940..1913685 Stenotrophomonas maltophilia R551-3 6475570 YP_002028088.1 CDS Smal_1701 NC_011071.1 1913702 1914676 D PFAM: extracellular solute-binding protein family 3; KEGG: oan:Oant_4349 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1913702..1914676 Stenotrophomonas maltophilia R551-3 6475571 YP_002028089.1 CDS Smal_1702 NC_011071.1 1914740 1917856 R PFAM: coagulation factor 5/8 type domain protein; KEGG: mca:MCA0553 discoidin domain protein; coagulation factor 5/8 type domain-containing protein complement(1914740..1917856) Stenotrophomonas maltophilia R551-3 6475572 YP_002028090.1 CDS Smal_1703 NC_011071.1 1918079 1918321 D KEGG: dac:Daci_0496 hypothetical protein; hypothetical protein 1918079..1918321 Stenotrophomonas maltophilia R551-3 6475573 YP_002028091.1 CDS Smal_1704 NC_011071.1 1918352 1918852 D KEGG: dac:Daci_0495 prophage CP4-57 regulatory; prophage CP4-57 regulatory 1918352..1918852 Stenotrophomonas maltophilia R551-3 6475574 YP_002028092.1 CDS Smal_1705 NC_011071.1 1918941 1919834 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_2480 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1918941..1919834) Stenotrophomonas maltophilia R551-3 6475575 YP_002028093.1 CDS Smal_1706 NC_011071.1 1919858 1920355 R KEGG: pol:Bpro_4766 hypothetical protein; hypothetical protein complement(1919858..1920355) Stenotrophomonas maltophilia R551-3 6475576 YP_002028094.1 CDS Smal_1707 NC_011071.1 1920372 1921115 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KR domain protein; KEGG: xac:XAC0083 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1920372..1921115) Stenotrophomonas maltophilia R551-3 6475577 YP_002028095.1 CDS Smal_1708 NC_011071.1 1921338 1922414 R KEGG: bxe:Bxe_C1221 hypothetical protein; hypothetical protein complement(1921338..1922414) Stenotrophomonas maltophilia R551-3 6475578 YP_002028096.1 CDS Smal_1709 NC_011071.1 1922519 1923130 D PFAM: regulatory protein TetR; KEGG: xcv:XCV0258 transcriptional regulator, TetR family; TetR family transcriptional regulator 1922519..1923130 Stenotrophomonas maltophilia R551-3 6475579 YP_002028097.1 CDS Smal_1710 NC_011071.1 1923127 1925073 R PFAM: EAL domain protein; KEGG: atc:AGR_C_2062 hypothetical protein; diguanylate phosphodiesterase complement(1923127..1925073) Stenotrophomonas maltophilia R551-3 6475580 YP_002028098.1 CDS Smal_1711 NC_011071.1 1925137 1926039 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: plu:plu1320 hypothetical protein; LysR family transcriptional regulator complement(1925137..1926039) Stenotrophomonas maltophilia R551-3 6475581 YP_002028099.1 CDS Smal_1712 NC_011071.1 1926159 1927670 D PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3197 hypothetical protein; major facilitator superfamily protein 1926159..1927670 Stenotrophomonas maltophilia R551-3 6475582 YP_002028100.1 CDS Smal_1713 NC_011071.1 1927664 1928380 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ppu:PP_2507 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(1927664..1928380) Stenotrophomonas maltophilia R551-3 6475583 YP_002028101.1 CDS Smal_1714 NC_011071.1 1928409 1929137 R KEGG: hch:HCH_03439 probable acetyltransferase; putative acetyltransferase complement(1928409..1929137) Stenotrophomonas maltophilia R551-3 6475584 YP_002028102.1 CDS Smal_1715 NC_011071.1 1929152 1929817 R PFAM: Rhodanese domain protein; regulatory protein ArsR; KEGG: pfl:PFL_5005 transcriptional regulator, ArsR family/rhodanese-like domain protein; ArsR family transcriptional regulator complement(1929152..1929817) Stenotrophomonas maltophilia R551-3 6475585 YP_002028103.1 CDS Smal_1716 NC_011071.1 1929873 1930376 D KEGG: pfl:PFL_5006 hypothetical protein; hypothetical protein 1929873..1930376 Stenotrophomonas maltophilia R551-3 6475586 YP_002028104.1 CDS Smal_1717 NC_011071.1 1930418 1931221 D PFAM: aminoglycoside phosphotransferase; KEGG: ret:RHE_CH02947 putative aminoglycoside 3'-phosphotransferase protein; aminoglycoside phosphotransferase 1930418..1931221 Stenotrophomonas maltophilia R551-3 6475587 YP_002028105.1 CDS Smal_1718 NC_011071.1 1931194 1931619 R PFAM: DoxX family protein; KEGG: pau:PA14_09540 hypothetical protein; DoxX family protein complement(1931194..1931619) Stenotrophomonas maltophilia R551-3 6475588 YP_002028106.1 CDS Smal_1719 NC_011071.1 1931763 1932353 D PFAM: regulatory protein TetR; KEGG: dac:Daci_4533 transcriptional regulator, TetR family; TetR family transcriptional regulator 1931763..1932353 Stenotrophomonas maltophilia R551-3 6475589 YP_002028107.1 CDS Smal_1720 NC_011071.1 1932350 1933384 D KEGG: dac:Daci_4532 transport protein; transporter 1932350..1933384 Stenotrophomonas maltophilia R551-3 6475590 YP_002028108.1 CDS Smal_1721 NC_011071.1 1933483 1934490 D PFAM: aminoglycoside phosphotransferase; KEGG: lpn:lpg1492 spectinomycin phosphotransferase; aminoglycoside phosphotransferase 1933483..1934490 Stenotrophomonas maltophilia R551-3 6475591 YP_002028109.1 CDS Smal_1722 NC_011071.1 1934633 1935556 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC1803 integral membrane protein; hypothetical protein complement(1934633..1935556) Stenotrophomonas maltophilia R551-3 6475592 YP_002028110.1 CDS murB NC_011071.1 1935553 1936614 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1935553..1936614) Stenotrophomonas maltophilia R551-3 6475593 YP_002028111.1 CDS Smal_1724 NC_011071.1 1936623 1937678 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1936623..1937678) Stenotrophomonas maltophilia R551-3 6475594 YP_002028112.1 CDS Smal_1725 NC_011071.1 1937687 1938457 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2447 hypothetical protein; type 11 methyltransferase complement(1937687..1938457) Stenotrophomonas maltophilia R551-3 6475595 YP_002028113.1 CDS Smal_1726 NC_011071.1 1938463 1938747 R KEGG: xac:XAC1807 hypothetical protein; hypothetical protein complement(1938463..1938747) Stenotrophomonas maltophilia R551-3 6475596 YP_002028114.1 CDS Smal_1727 NC_011071.1 1938886 1939725 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_0429 3-oxoacyl-[ACP] reductase; short-chain dehydrogenase/reductase SDR complement(1938886..1939725) Stenotrophomonas maltophilia R551-3 6475597 YP_002028115.1 CDS Smal_1728 NC_011071.1 1939725 1941257 R PFAM: Aldehyde Dehydrogenase_; KEGG: xcb:XC_2445 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1939725..1941257) Stenotrophomonas maltophilia R551-3 6475598 YP_002028116.1 CDS Smal_1729 NC_011071.1 1941554 1942444 R PFAM: dihydrodipicolinate synthetase; KEGG: sen:SACE_1253 dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(1941554..1942444) Stenotrophomonas maltophilia R551-3 6475600 YP_002028117.1 CDS Smal_1730 NC_011071.1 1942583 1943056 D PFAM: GCN5-related N-acetyltransferase; KEGG: bav:BAV2497 acetyltransferase; N-acetyltransferase GCN5 1942583..1943056 Stenotrophomonas maltophilia R551-3 6475601 YP_002028118.1 CDS Smal_1731 NC_011071.1 1943063 1943620 R PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_0807 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1943063..1943620) Stenotrophomonas maltophilia R551-3 6475602 YP_002028119.1 CDS Smal_1732 NC_011071.1 1943734 1944660 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppf:Pput_2154 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 1943734..1944660 Stenotrophomonas maltophilia R551-3 6475603 YP_002028120.1 CDS Smal_1733 NC_011071.1 1944608 1945438 R PFAM: UspA domain protein; KEGG: bpt:Bpet4186 hypothetical protein; UspA domain-containing protein complement(1944608..1945438) Stenotrophomonas maltophilia R551-3 6475604 YP_002028121.1 CDS Smal_1734 NC_011071.1 1945609 1946175 D KEGG: xom:XOO_2873 transcriptional regulator NfxB; transcriptional regulator NfxB 1945609..1946175 Stenotrophomonas maltophilia R551-3 6475605 YP_002028122.1 CDS Smal_1735 NC_011071.1 1946207 1946566 R PFAM: response regulator receiver; KEGG: xac:XAC1284 two-component system regulatory protein; response regulator receiver protein complement(1946207..1946566) Stenotrophomonas maltophilia R551-3 6475606 YP_002028123.1 CDS Smal_1736 NC_011071.1 1946556 1947719 R KEGG: xac:XAC1282 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(1946556..1947719) Stenotrophomonas maltophilia R551-3 6475607 YP_002028124.1 CDS Smal_1737 NC_011071.1 1947872 1950985 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3057 two-component system sensor protein; multi-sensor hybrid histidine kinase 1947872..1950985 Stenotrophomonas maltophilia R551-3 6475608 YP_002028125.1 CDS Smal_1738 NC_011071.1 1950982 1951806 D PFAM: MCP methyltransferase CheR-type; KEGG: xcb:XC_3058 chemotaxis protein; CheR-type MCP methyltransferase 1950982..1951806 Stenotrophomonas maltophilia R551-3 6475609 YP_002028126.1 CDS Smal_1739 NC_011071.1 1951806 1952381 D PFAM: CheB methylesterase; KEGG: xac:XAC1280 protein-glutamate methylesterase; CheB methylesterase 1951806..1952381 Stenotrophomonas maltophilia R551-3 6475610 YP_002028127.1 CDS Smal_1740 NC_011071.1 1952378 1953511 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_3060 two-component system regulatory protein; response regulator receiver sensor signal transduction histidine kinase 1952378..1953511 Stenotrophomonas maltophilia R551-3 6475611 YP_002028128.1 CDS Smal_1741 NC_011071.1 1953595 1954023 D PFAM: BLUF domain protein; KEGG: xac:XAC2120 hypothetical protein; BLUF domain-containing protein 1953595..1954023 Stenotrophomonas maltophilia R551-3 6475612 YP_002028129.1 CDS Smal_1742 NC_011071.1 1954039 1954359 R PFAM: regulatory protein ArsR; KEGG: hch:HCH_04177 predicted transcriptional regulator; ArsR family transcriptional regulator complement(1954039..1954359) Stenotrophomonas maltophilia R551-3 6475613 YP_002028130.1 CDS Smal_1743 NC_011071.1 1954446 1954883 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: abo:ABO_2636 hypothetical protein; hypothetical protein 1954446..1954883 Stenotrophomonas maltophilia R551-3 6475614 YP_002028131.1 CDS Smal_1744 NC_011071.1 1954880 1955293 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mrd:Mrad2831_5966 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 1954880..1955293 Stenotrophomonas maltophilia R551-3 6475615 YP_002028132.1 CDS Smal_1745 NC_011071.1 1955361 1956413 D PFAM: Choloylglycine hydrolase; peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: bvi:Bcep1808_5029 choloylglycine hydrolase; Choloylglycine hydrolase 1955361..1956413 Stenotrophomonas maltophilia R551-3 6475616 YP_002028133.1 CDS Smal_1746 NC_011071.1 1956410 1957189 R KEGG: xcb:XC_2926 hypothetical protein; hypothetical protein complement(1956410..1957189) Stenotrophomonas maltophilia R551-3 6475617 YP_002028134.1 CDS Smal_1747 NC_011071.1 1957271 1957966 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_3410 transcriptional regulator; AraC family transcriptional regulator 1957271..1957966 Stenotrophomonas maltophilia R551-3 6475618 YP_002028135.1 CDS Smal_1748 NC_011071.1 1958132 1959082 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: xcb:XC_3411 integral membrane protein; hypothetical protein 1958132..1959082 Stenotrophomonas maltophilia R551-3 6475619 YP_002028136.1 CDS thrA NC_011071.1 1959440 1961944 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1959440..1961944 Stenotrophomonas maltophilia R551-3 6475620 YP_002028137.1 CDS Smal_1750 NC_011071.1 1961941 1962855 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1961941..1962855 Stenotrophomonas maltophilia R551-3 6475621 YP_002028138.1 CDS Smal_1751 NC_011071.1 1962885 1964171 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1962885..1964171 Stenotrophomonas maltophilia R551-3 6475622 YP_002028139.1 CDS Smal_1752 NC_011071.1 1964275 1965027 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: xac:XAC1825 fumarate and nitrate reduction regulatory protein; Crp/Fnr family transcriptional regulator complement(1964275..1965027) Stenotrophomonas maltophilia R551-3 6475623 YP_002028140.1 CDS hisS NC_011071.1 1965155 1966552 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1965155..1966552 Stenotrophomonas maltophilia R551-3 6475624 YP_002028141.1 CDS Smal_1754 NC_011071.1 1966552 1966845 D hypothetical protein 1966552..1966845 Stenotrophomonas maltophilia R551-3 6475625 YP_002028142.1 CDS Smal_1755 NC_011071.1 1967119 1967427 D TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: xac:XAC1827 hypothetical protein; TrpR-like protein, YerC/YecD 1967119..1967427 Stenotrophomonas maltophilia R551-3 6475626 YP_002028143.1 CDS hisG NC_011071.1 1967462 1968373 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1967462..1968373 Stenotrophomonas maltophilia R551-3 6475627 YP_002028144.1 CDS hisD NC_011071.1 1968370 1969665 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1968370..1969665 Stenotrophomonas maltophilia R551-3 6475628 YP_002028145.1 CDS Smal_1758 NC_011071.1 1969662 1970756 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1969662..1970756 Stenotrophomonas maltophilia R551-3 6475629 YP_002028146.1 CDS Smal_1759 NC_011071.1 1970753 1971826 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1970753..1971826 Stenotrophomonas maltophilia R551-3 6475630 YP_002028147.1 CDS hisH NC_011071.1 1971823 1972425 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1971823..1972425 Stenotrophomonas maltophilia R551-3 6475631 YP_002028148.1 CDS Smal_1761 NC_011071.1 1972422 1973156 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1972422..1973156 Stenotrophomonas maltophilia R551-3 6475632 YP_002028149.1 CDS Smal_1762 NC_011071.1 1973150 1973926 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1973150..1973926 Stenotrophomonas maltophilia R551-3 6475633 YP_002028150.1 CDS Smal_1763 NC_011071.1 1973916 1974536 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1973916..1974536 Stenotrophomonas maltophilia R551-3 6475634 YP_002028151.1 CDS Smal_1764 NC_011071.1 1974693 1976282 D PFAM: metallophosphoesterase; KEGG: xcv:XCV1882 putative secreted protein; metallophosphoesterase 1974693..1976282 Stenotrophomonas maltophilia R551-3 6475635 YP_002028152.1 CDS Smal_1765 NC_011071.1 1976319 1976603 D hypothetical protein 1976319..1976603 Stenotrophomonas maltophilia R551-3 6475636 YP_002028153.1 CDS Smal_1766 NC_011071.1 1976688 1977710 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1976688..1977710 Stenotrophomonas maltophilia R551-3 6475637 YP_002028154.1 CDS Smal_1767 NC_011071.1 1977762 1978760 D PFAM: peptidase T2 asparaginase 2; KEGG: xcv:XCV3222 asparaginase precursor; N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase 1977762..1978760 Stenotrophomonas maltophilia R551-3 6475638 YP_002028155.1 CDS Smal_1768 NC_011071.1 1978757 1979488 D PFAM: CutC family protein; KEGG: xac:XAC3091 copper homeostasis protein; CutC family protein 1978757..1979488 Stenotrophomonas maltophilia R551-3 6475639 YP_002028156.1 CDS Smal_1769 NC_011071.1 1979890 1982847 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_4311 hypothetical protein; TonB-dependent receptor 1979890..1982847 Stenotrophomonas maltophilia R551-3 6475640 YP_002028157.1 CDS Smal_1770 NC_011071.1 1983041 1985542 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1983041..1985542 Stenotrophomonas maltophilia R551-3 6475641 YP_002028158.1 CDS Smal_1771 NC_011071.1 1985554 1986009 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1985554..1986009 Stenotrophomonas maltophilia R551-3 6475642 YP_002028159.1 CDS Smal_1772 NC_011071.1 1986091 1986285 R PFAM: Heavy metal transport/detoxification protein; KEGG: stm:STM0355 putative copper chaperone; heavy metal transport/detoxification protein complement(1986091..1986285) Stenotrophomonas maltophilia R551-3 6475725 YP_002028160.1 CDS Smal_1773 NC_011071.1 1986487 1989630 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV1963 TonB-dependent outer membrane receptor; TonB-dependent receptor complement(1986487..1989630) Stenotrophomonas maltophilia R551-3 6475726 YP_002028161.1 CDS Smal_1774 NC_011071.1 1990663 1993128 D TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xcb:XC_4310 hypothetical protein; alpha-1,2-mannosidase 1990663..1993128 Stenotrophomonas maltophilia R551-3 6475727 YP_002028162.1 CDS Smal_1775 NC_011071.1 1993225 1994277 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_2729 transcriptional regulator; LacI family transcriptional regulator 1993225..1994277 Stenotrophomonas maltophilia R551-3 6475728 YP_002028163.1 CDS Smal_1776 NC_011071.1 1994338 1995651 D TIGRFAM: L-fucose transporter; glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_2728 glucose/galactose transporter; glucose/galactose transporter 1994338..1995651 Stenotrophomonas maltophilia R551-3 6475729 YP_002028164.1 CDS Smal_1777 NC_011071.1 1995659 1996654 D PFAM: PfkB domain protein; KEGG: xcb:XC_2727 fructokinase; PfkB domain-containing protein 1995659..1996654 Stenotrophomonas maltophilia R551-3 6475730 YP_002028165.1 CDS Smal_1778 NC_011071.1 1996651 1997877 D PFAM: N-acylglucosamine 2-epimerase; KEGG: xom:XOO_1953 hypothetical protein; N-acylglucosamine 2-epimerase 1996651..1997877 Stenotrophomonas maltophilia R551-3 6475731 YP_002028166.1 CDS Smal_1779 NC_011071.1 1998040 2000658 D PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 sugar binding; KEGG: xcb:XC_1218 beta-mannosidase; glycoside hydrolase family 2 1998040..2000658 Stenotrophomonas maltophilia R551-3 6475732 YP_002028167.1 CDS Smal_1780 NC_011071.1 2000745 2001440 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xac:XAC1838 enolase-phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(2000745..2001440) Stenotrophomonas maltophilia R551-3 6475733 YP_002028168.1 CDS Smal_1781 NC_011071.1 2001444 2002001 R PFAM: Acireductone dioxygenase ARD; KEGG: xcv:XCV1885 acireductone dioxygenase family protein; Acireductone dioxygenase ARD complement(2001444..2002001) Stenotrophomonas maltophilia R551-3 6475734 YP_002028169.1 CDS Smal_1782 NC_011071.1 2002089 2002730 R catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase complement(2002089..2002730) Stenotrophomonas maltophilia R551-3 6475735 YP_002028170.1 CDS Smal_1783 NC_011071.1 2002983 2003357 D KEGG: sgl:SG0774 hypothetical protein; hypothetical protein 2002983..2003357 Stenotrophomonas maltophilia R551-3 6475736 YP_002028171.1 CDS Smal_1784 NC_011071.1 2003418 2004845 R PFAM: amino acid permease-associated region; KEGG: xac:XAC1841 cationic amino acid transporter; amino acid permease-associated protein complement(2003418..2004845) Stenotrophomonas maltophilia R551-3 6475737 YP_002028172.1 CDS Smal_1785 NC_011071.1 2004928 2006403 R PFAM: amino acid permease-associated region; KEGG: xac:XAC1842 cationic amino acid transporter; amino acid permease-associated protein complement(2004928..2006403) Stenotrophomonas maltophilia R551-3 6475738 YP_002028173.1 CDS Smal_1786 NC_011071.1 2006537 2007151 D PFAM: NUDIX hydrolase; KEGG: xoo:XOO2142 hypothetical protein; NUDIX hydrolase 2006537..2007151 Stenotrophomonas maltophilia R551-3 6475739 YP_002028174.1 CDS Smal_1787 NC_011071.1 2007231 2008472 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(2007231..2008472) Stenotrophomonas maltophilia R551-3 6475740 YP_002028175.1 CDS Smal_1788 NC_011071.1 2008642 2010030 D PFAM: FAD linked oxidase domain protein; KEGG: xcv:XCV1891 FAD linked oxidase; FAD linked oxidase domain-containing protein 2008642..2010030 Stenotrophomonas maltophilia R551-3 6475741 YP_002028176.1 CDS Smal_1789 NC_011071.1 2010093 2010392 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: xcv:XCV1892 putative secreted protein; hypothetical protein 2010093..2010392 Stenotrophomonas maltophilia R551-3 6475742 YP_002028177.1 CDS Smal_1790 NC_011071.1 2010433 2012229 D KEGG: xac:XAC1847 hypothetical protein; hypothetical protein 2010433..2012229 Stenotrophomonas maltophilia R551-3 6475743 YP_002028178.1 CDS Smal_1791 NC_011071.1 2012207 2013283 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aav:Aave_2525 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2012207..2013283) Stenotrophomonas maltophilia R551-3 6475744 YP_002028179.1 CDS Smal_1792 NC_011071.1 2013283 2014032 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_4353 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(2013283..2014032) Stenotrophomonas maltophilia R551-3 6475745 YP_002028180.1 CDS Smal_1793 NC_011071.1 2014129 2015277 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit 2014129..2015277 Stenotrophomonas maltophilia R551-3 6475746 YP_002028181.1 CDS Smal_1794 NC_011071.1 2015314 2018463 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dac:Daci_5741 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2015314..2018463 Stenotrophomonas maltophilia R551-3 6475747 YP_002028182.1 CDS Smal_1795 NC_011071.1 2018444 2018836 D hypothetical protein 2018444..2018836 Stenotrophomonas maltophilia R551-3 6475748 YP_002028183.1 CDS Smal_1796 NC_011071.1 2018920 2019606 D KEGG: aeh:Mlg_1709 hypothetical protein; hypothetical protein 2018920..2019606 Stenotrophomonas maltophilia R551-3 6475749 YP_002028184.1 CDS Smal_1797 NC_011071.1 2019771 2020316 R KEGG: xcb:XC_2360 hypothetical protein; hypothetical protein complement(2019771..2020316) Stenotrophomonas maltophilia R551-3 6475750 YP_002028185.1 CDS Smal_1798 NC_011071.1 2020306 2020872 R Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P complement(2020306..2020872) Stenotrophomonas maltophilia R551-3 6475751 YP_002028186.1 CDS Smal_1799 NC_011071.1 2020923 2021693 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_2754 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR complement(2020923..2021693) Stenotrophomonas maltophilia R551-3 6475752 YP_002028187.1 CDS Smal_1800 NC_011071.1 2021793 2022689 R PFAM: pyruvate carboxyltransferase; KEGG: xcv:XCV1897 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(2021793..2022689) Stenotrophomonas maltophilia R551-3 6475753 YP_002028188.1 CDS Smal_1801 NC_011071.1 2022686 2023087 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0736 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(2022686..2023087) Stenotrophomonas maltophilia R551-3 6475754 YP_002028189.1 CDS Smal_1802 NC_011071.1 2023090 2023878 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xcb:XC_2356 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(2023090..2023878) Stenotrophomonas maltophilia R551-3 6475755 YP_002028190.1 CDS Smal_1803 NC_011071.1 2023998 2024252 D PFAM: FeoA family protein; KEGG: xcb:XC_2355 ferrous iron transport protein; FeoA family protein 2023998..2024252 Stenotrophomonas maltophilia R551-3 6475756 YP_002028191.1 CDS Smal_1804 NC_011071.1 2024249 2026114 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: xcv:XCV1901 ferrous iron transport protein FeoB; ferrous iron transport protein B 2024249..2026114 Stenotrophomonas maltophilia R551-3 6475757 YP_002028192.1 CDS Smal_1805 NC_011071.1 2026114 2026368 D KEGG: xac:XAC1856 hypothetical protein; hypothetical protein 2026114..2026368 Stenotrophomonas maltophilia R551-3 6475758 YP_002028193.1 CDS Smal_1806 NC_011071.1 2026414 2026875 R KEGG: fjo:Fjoh_0892 hypothetical protein; hypothetical protein complement(2026414..2026875) Stenotrophomonas maltophilia R551-3 6475759 YP_002028194.1 CDS Smal_1807 NC_011071.1 2027034 2027615 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: azo:azo1477 probable NAD(P)H quinone oxidoreductase; NAD(P)H dehydrogenase (quinone) complement(2027034..2027615) Stenotrophomonas maltophilia R551-3 6475760 YP_002028195.1 CDS Smal_1808 NC_011071.1 2027671 2028066 R PFAM: regulatory protein MerR; KEGG: azo:azo1478 probable MerR-family transcriptional regulator; MerR family transcriptional regulator complement(2027671..2028066) Stenotrophomonas maltophilia R551-3 6475761 YP_002028196.1 CDS fabG NC_011071.1 2028071 2028850 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2028071..2028850) Stenotrophomonas maltophilia R551-3 6475762 YP_002028197.1 CDS Smal_1810 NC_011071.1 2028923 2029642 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2028923..2029642 Stenotrophomonas maltophilia R551-3 6475763 YP_002028198.1 CDS Smal_1811 NC_011071.1 2029944 2031125 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2029944..2031125 Stenotrophomonas maltophilia R551-3 6475764 YP_002028199.1 CDS carB NC_011071.1 2031275 2034517 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2031275..2034517 Stenotrophomonas maltophilia R551-3 6475765 YP_002028200.1 CDS greA NC_011071.1 2034514 2034990 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2034514..2034990 Stenotrophomonas maltophilia R551-3 6475766 YP_002028201.1 CDS Smal_1814 NC_011071.1 2034995 2035912 D KEGG: xom:XOO_2737 regulatory protein; regulatory protein 2034995..2035912 Stenotrophomonas maltophilia R551-3 6475767 YP_002028202.1 CDS Smal_1815 NC_011071.1 2036022 2037092 R PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein complement(2036022..2037092) Stenotrophomonas maltophilia R551-3 6475768 YP_002028203.1 CDS Smal_1816 NC_011071.1 2037093 2038136 R PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein complement(2037093..2038136) Stenotrophomonas maltophilia R551-3 6475769 YP_002028204.1 CDS Smal_1817 NC_011071.1 2038259 2040016 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: xac:XAC1865 single-stranded-DNA-specific exonuclease; single-stranded-DNA-specific exonuclease RecJ 2038259..2040016 Stenotrophomonas maltophilia R551-3 6475770 YP_002028205.1 CDS Smal_1818 NC_011071.1 2040100 2041149 R PFAM: protein of unknown function DUF1176; KEGG: xcb:XC_2342 regulatory protein RpfI; hypothetical protein complement(2040100..2041149) Stenotrophomonas maltophilia R551-3 6475771 YP_002028206.1 CDS Smal_1819 NC_011071.1 2041281 2044172 D PFAM: Vault protein inter-alpha-trypsin domain protein; KEGG: rfr:Rfer_2477 hypothetical protein; Vault protein inter-alpha-trypsin domain-containing protein 2041281..2044172 Stenotrophomonas maltophilia R551-3 6475772 YP_002028207.1 CDS Smal_1820 NC_011071.1 2044515 2045480 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2044515..2045480 Stenotrophomonas maltophilia R551-3 6475773 YP_002028208.1 CDS Smal_1821 NC_011071.1 2045516 2046724 R KEGG: xcv:XCV1913 hypothetical protein; hypothetical protein complement(2045516..2046724) Stenotrophomonas maltophilia R551-3 6475774 YP_002028209.1 CDS Smal_1822 NC_011071.1 2046859 2047761 D PFAM: LytTr DNA-binding region; KEGG: xac:XAC1874 regulatory protein; response regulator receiver protein 2046859..2047761 Stenotrophomonas maltophilia R551-3 6475775 YP_002028210.1 CDS Smal_1823 NC_011071.1 2047832 2048957 D catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 join(2047832..2047906,2047908..2048957) Stenotrophomonas maltophilia R551-3 6475776 YP_002028211.1 CDS Smal_1824 NC_011071.1 2049006 2049785 D SMART: helix-turn-helix domain protein; KEGG: rle:RL4049 hypothetical protein; XRE family transcriptional regulator 2049006..2049785 Stenotrophomonas maltophilia R551-3 6475777 YP_002028212.1 CDS Smal_1825 NC_011071.1 2050587 2051972 D PFAM: Aldehyde Dehydrogenase_; KEGG: pst:PSPTO_2660 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2050587..2051972 Stenotrophomonas maltophilia R551-3 6475778 YP_002028213.1 CDS Smal_1826 NC_011071.1 2052036 2053676 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rle:pRL120271 acetolactate synthase; thiamine pyrophosphate domain-containing TPP-binding protein 2052036..2053676 Stenotrophomonas maltophilia R551-3 6475779 YP_002028214.1 CDS lysS NC_011071.1 2053950 2055461 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2053950..2055461 Stenotrophomonas maltophilia R551-3 6475780 YP_002028215.1 CDS Smal_1828 NC_011071.1 2055667 2056806 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: xac:XAC1877 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 2055667..2056806 Stenotrophomonas maltophilia R551-3 6475781 YP_002028216.1 CDS Smal_1829 NC_011071.1 2056808 2059531 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: xcv:XCV1919 sensory/regulatory protein RpfC; multi-sensor hybrid histidine kinase 2056808..2059531 Stenotrophomonas maltophilia R551-3 6475782 YP_002028217.1 CDS Smal_1830 NC_011071.1 2059544 2060413 R regulator of pathogenicity factor RpfF; involved in synthesis of a diffusible signal factor involved in the regulation of extracellular enzymes; enoyl-CoA hydratase complement(2059544..2060413) Stenotrophomonas maltophilia R551-3 6475783 YP_002028218.1 CDS Smal_1831 NC_011071.1 2060615 2062291 R PFAM: AMP-dependent synthetase and ligase; KEGG: xac:XAC1880 long-chain fatty acyl CoA ligase; putative long-chain fatty acyl CoA ligase complement(2060615..2062291) Stenotrophomonas maltophilia R551-3 6475784 YP_002028219.1 CDS Smal_1832 NC_011071.1 2062514 2064196 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2062514..2064196) Stenotrophomonas maltophilia R551-3 6475785 YP_002028220.1 CDS Smal_1833 NC_011071.1 2064299 2065771 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(2064299..2065771) Stenotrophomonas maltophilia R551-3 6475786 YP_002028221.1 CDS Smal_1834 NC_011071.1 2065810 2066400 R TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR; KEGG: pmy:Pmen_0483 transcriptional regulator BetI; TetR family transcriptional regulator complement(2065810..2066400) Stenotrophomonas maltophilia R551-3 6475787 YP_002028222.1 CDS Smal_1835 NC_011071.1 2066571 2068121 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aci:ACIAD1011 putative choline/carnitine/betaine transporter family protein; choline/carnitine/betaine transporter 2066571..2068121 Stenotrophomonas maltophilia R551-3 6475788 YP_002028223.1 CDS Smal_1836 NC_011071.1 2068232 2070985 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2068232..2070985) Stenotrophomonas maltophilia R551-3 6475789 YP_002028224.1 CDS Smal_1837 NC_011071.1 2071287 2071511 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: xcb:XC_2328 hypothetical protein; AbrB family transcriptional regulator 2071287..2071511 Stenotrophomonas maltophilia R551-3 6475790 YP_002028225.1 CDS Smal_1838 NC_011071.1 2071518 2071916 D KEGG: xfn:XfasM23_0226 hypothetical protein; hypothetical protein 2071518..2071916 Stenotrophomonas maltophilia R551-3 6475791 YP_002028226.1 CDS Smal_1839 NC_011071.1 2071956 2074547 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2071956..2074547 Stenotrophomonas maltophilia R551-3 6475792 YP_002028227.1 CDS Smal_1840 NC_011071.1 2074663 2075079 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC0008 TonB protein; TonB family protein 2074663..2075079 Stenotrophomonas maltophilia R551-3 6475793 YP_002028228.1 CDS Smal_1841 NC_011071.1 2075079 2075582 D TIGRFAM: TonB family protein; KEGG: xcb:XC_2641 hypothetical protein; TonB family protein 2075079..2075582 Stenotrophomonas maltophilia R551-3 6475794 YP_002028229.1 CDS Smal_1842 NC_011071.1 2075636 2076439 R PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_2325 beta-ketoadipate enol-lactone hydrolase; alpha/beta hydrolase fold domain-containing protein complement(2075636..2076439) Stenotrophomonas maltophilia R551-3 6475867 YP_002028230.1 CDS Smal_1843 NC_011071.1 2076759 2077832 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2076759..2077832) Stenotrophomonas maltophilia R551-3 6475868 YP_002028231.1 CDS Smal_1844 NC_011071.1 2077829 2078425 R catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD complement(2077829..2078425) Stenotrophomonas maltophilia R551-3 6475869 YP_002028232.1 CDS Smal_1845 NC_011071.1 2078422 2079291 R PFAM: MCP methyltransferase CheR-type; KEGG: xac:XAC1890 chemotaxis protein methyltransferase; CheR-type MCP methyltransferase complement(2078422..2079291) Stenotrophomonas maltophilia R551-3 6475870 YP_002028233.1 CDS Smal_1846 NC_011071.1 2079329 2081596 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: xcv:XCV1952 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2079329..2081596) Stenotrophomonas maltophilia R551-3 6475871 YP_002028234.1 CDS Smal_1847 NC_011071.1 2082327 2084708 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcv:XCV1933 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2082327..2084708) Stenotrophomonas maltophilia R551-3 6475872 YP_002028235.1 CDS Smal_1848 NC_011071.1 2084810 2085193 R KEGG: xcv:XCV1934 putative secreted protein; hypothetical protein complement(2084810..2085193) Stenotrophomonas maltophilia R551-3 6475873 YP_002028236.1 CDS Smal_1849 NC_011071.1 2085330 2085821 R PFAM: CheW domain protein; KEGG: xcb:XC_2318 chemotaxis protein; CheW protein complement(2085330..2085821) Stenotrophomonas maltophilia R551-3 6475874 YP_002028237.1 CDS Smal_1850 NC_011071.1 2086026 2086799 R PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: xcb:XC_2317 hypothetical protein; YcgR family protein complement(2086026..2086799) Stenotrophomonas maltophilia R551-3 6475875 YP_002028238.1 CDS Smal_1851 NC_011071.1 2086952 2089189 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_2309 chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2086952..2089189) Stenotrophomonas maltophilia R551-3 6475876 YP_002028239.1 CDS Smal_1852 NC_011071.1 2089582 2091576 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xcb:XC_2303 chemotaxis protein; CheA signal transduction histidine kinase complement(2089582..2091576) Stenotrophomonas maltophilia R551-3 6475877 YP_002028240.1 CDS Smal_1853 NC_011071.1 2091622 2091987 R PFAM: response regulator receiver; KEGG: xom:XOO_2692 chemotaxis response regulator; response regulator receiver protein complement(2091622..2091987) Stenotrophomonas maltophilia R551-3 6475878 YP_002028241.1 CDS Smal_1854 NC_011071.1 2091984 2092292 R KEGG: xcb:XC_2301 hypothetical protein; hypothetical protein complement(2091984..2092292) Stenotrophomonas maltophilia R551-3 6475879 YP_002028242.1 CDS Smal_1855 NC_011071.1 2092578 2093867 R PFAM: CheW domain protein; KEGG: xcv:XCV1959 chemotaxis signal transduction protein; CheW protein complement(2092578..2093867) Stenotrophomonas maltophilia R551-3 6475880 YP_002028243.1 CDS Smal_1856 NC_011071.1 2093864 2094646 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV1960 putative ParA family ATPase; Cobyrinic acid ac-diamide synthase complement(2093864..2094646) Stenotrophomonas maltophilia R551-3 6475881 YP_002028244.1 CDS Smal_1857 NC_011071.1 2094651 2095667 R Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD complement(2094651..2095667) Stenotrophomonas maltophilia R551-3 6475882 YP_002028245.1 CDS motC NC_011071.1 2095669 2096409 R homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein complement(2095669..2096409) Stenotrophomonas maltophilia R551-3 6475883 YP_002028246.1 CDS Smal_1859 NC_011071.1 2096557 2098401 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xom:XOO_2483 chemotaxis related protein; CheA signal transduction histidine kinase complement(2096557..2098401) Stenotrophomonas maltophilia R551-3 6475884 YP_002028247.1 CDS Smal_1860 NC_011071.1 2098404 2099009 R KEGG: xcb:XC_2283 chemotaxis related protein; putative chemotaxis phosphatase, CheZ complement(2098404..2099009) Stenotrophomonas maltophilia R551-3 6475885 YP_002028248.1 CDS Smal_1861 NC_011071.1 2099009 2099389 R PFAM: response regulator receiver; KEGG: xom:XOO_2481 chemotaxis protein; response regulator receiver protein complement(2099009..2099389) Stenotrophomonas maltophilia R551-3 6475886 YP_002028249.1 CDS Smal_1862 NC_011071.1 2099459 2100202 R KEGG: xcb:XC_2281 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma-28 subunit FliA/WhiG complement(2099459..2100202) Stenotrophomonas maltophilia R551-3 6475887 YP_002028250.1 CDS Smal_1863 NC_011071.1 2100199 2101086 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcb:XC_2280 flagellar biosynthesis switch protein; Cobyrinic acid ac-diamide synthase complement(2100199..2101086) Stenotrophomonas maltophilia R551-3 6475888 YP_002028251.1 CDS Smal_1864 NC_011071.1 2101073 2102701 R Positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(2101073..2102701) Stenotrophomonas maltophilia R551-3 6475889 YP_002028252.1 CDS flhA NC_011071.1 2102847 2104955 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2102847..2104955) Stenotrophomonas maltophilia R551-3 6475890 YP_002028253.1 CDS flhB NC_011071.1 2104952 2106082 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2104952..2106082) Stenotrophomonas maltophilia R551-3 6475891 YP_002028254.1 CDS Smal_1867 NC_011071.1 2106201 2108333 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pau:PA14_42220 putative integral membrane sensor domain; diguanylate cyclase/phosphodiesterase complement(2106201..2108333) Stenotrophomonas maltophilia R551-3 6475892 YP_002028255.1 CDS Smal_1868 NC_011071.1 2108498 2109289 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: xcb:XC_2273 flagellar biosynthetic protein; flagellar biosynthetic protein FliR complement(2108498..2109289) Stenotrophomonas maltophilia R551-3 6475893 YP_002028256.1 CDS Smal_1869 NC_011071.1 2109303 2109572 R PFAM: export protein FliQ family 3; KEGG: xom:XOO_2471 flagellar biosynthesis; export protein FliQ family 3 complement(2109303..2109572) Stenotrophomonas maltophilia R551-3 6475894 YP_002028257.1 CDS fliP NC_011071.1 2109655 2110434 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2109655..2110434) Stenotrophomonas maltophilia R551-3 6475895 YP_002028258.1 CDS Smal_1871 NC_011071.1 2110436 2110855 R PFAM: flagellar biosynthesis protein FliO; KEGG: xcb:XC_2269 flagellar protein; flagellar biosynthesis protein FliO complement(2110436..2110855) Stenotrophomonas maltophilia R551-3 6475896 YP_002028259.1 CDS Smal_1872 NC_011071.1 2110852 2111187 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: xac:XAC1946 flagellar protein; flagellar motor switch protein FliN complement(2110852..2111187) Stenotrophomonas maltophilia R551-3 6475897 YP_002028260.1 CDS fliM NC_011071.1 2111184 2112188 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(2111184..2112188) Stenotrophomonas maltophilia R551-3 6475898 YP_002028261.1 CDS Smal_1874 NC_011071.1 2112199 2112714 R PFAM: flagellar basal body-associated protein FliL; KEGG: xcv:XCV1992 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(2112199..2112714) Stenotrophomonas maltophilia R551-3 6475899 YP_002028262.1 CDS Smal_1875 NC_011071.1 2112887 2114056 R PFAM: flagellar hook-length control protein; KEGG: xcb:XC_2265 flagellar protein; flagellar hook-length control protein complement(2112887..2114056) Stenotrophomonas maltophilia R551-3 6475900 YP_002028263.1 CDS Smal_1876 NC_011071.1 2114056 2114523 R TIGRFAM: flagellar export protein FliJ; KEGG: xcb:XC_2264 flagellar FliJ protein; flagellar export protein FliJ complement(2114056..2114523) Stenotrophomonas maltophilia R551-3 6475901 YP_002028264.1 CDS Smal_1877 NC_011071.1 2114527 2115912 R KEGG: xcb:XC_2263 flagellar protein; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase complement(2114527..2115912) Stenotrophomonas maltophilia R551-3 6475902 YP_002028265.1 CDS Smal_1878 NC_011071.1 2115909 2116550 R PFAM: flagellar assembly protein FliH; KEGG: xac:XAC1952 flagellar protein; flagellar assembly protein FliH complement(2115909..2116550) Stenotrophomonas maltophilia R551-3 6475903 YP_002028266.1 CDS Smal_1879 NC_011071.1 2116547 2117548 R PFAM: flagellar motor switch protein FliG; KEGG: xac:XAC1953 flagellar protein; flagellar motor switch protein FliG complement(2116547..2117548) Stenotrophomonas maltophilia R551-3 6475904 YP_002028267.1 CDS fliF NC_011071.1 2117541 2119187 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(2117541..2119187) Stenotrophomonas maltophilia R551-3 6475905 YP_002028268.1 CDS Smal_1881 NC_011071.1 2119200 2119565 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: xoo:XOO2600 flagellar protein; flagellar hook-basal body complex subunit FliE complement(2119200..2119565) Stenotrophomonas maltophilia R551-3 6475906 YP_002028269.1 CDS Smal_1882 NC_011071.1 2120004 2120420 R KEGG: cvi:CV_1372 hypothetical protein; hypothetical protein complement(2120004..2120420) Stenotrophomonas maltophilia R551-3 6475907 YP_002028270.1 CDS Smal_1883 NC_011071.1 2120618 2122123 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: xom:XOO_2447 transcriptional regulator; Fis family sigma-54 specific transcriptional regulator complement(2120618..2122123) Stenotrophomonas maltophilia R551-3 6475908 YP_002028271.1 CDS Smal_1884 NC_011071.1 2122120 2122497 R PFAM: response regulator receiver; KEGG: xac:XAC1968 response regulator; response regulator receiver protein complement(2122120..2122497) Stenotrophomonas maltophilia R551-3 6475909 YP_002028272.1 CDS Smal_1885 NC_011071.1 2122512 2123921 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: xac:XAC1969 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN complement(2122512..2123921) Stenotrophomonas maltophilia R551-3 6475910 YP_002028273.1 CDS Smal_1886 NC_011071.1 2124335 2125279 D PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 2124335..2125279 Stenotrophomonas maltophilia R551-3 6475911 YP_002028274.1 CDS Smal_1887 NC_011071.1 2125364 2126308 D PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 2125364..2126308 Stenotrophomonas maltophilia R551-3 6475912 YP_002028275.1 CDS Smal_1888 NC_011071.1 2126430 2127068 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcv:XCV2017 two-component system response regulator, LuxR family; two component LuxR family transcriptional regulator complement(2126430..2127068) Stenotrophomonas maltophilia R551-3 6475913 YP_002028276.1 CDS Smal_1889 NC_011071.1 2127154 2127732 R KEGG: xom:XOO_2443 hypothetical protein; hypothetical protein complement(2127154..2127732) Stenotrophomonas maltophilia R551-3 6475914 YP_002028277.1 CDS Smal_1890 NC_011071.1 2127729 2128022 R KEGG: xac:XAC1972 hypothetical protein; hypothetical protein complement(2127729..2128022) Stenotrophomonas maltophilia R551-3 6475915 YP_002028278.1 CDS Smal_1891 NC_011071.1 2128019 2128435 R PFAM: flagellar protein FliS; KEGG: xcv:XCV2020 flagellin-specific chaperone FliS; flagellar protein FliS complement(2128019..2128435) Stenotrophomonas maltophilia R551-3 6475916 YP_002028279.1 CDS Smal_1892 NC_011071.1 2128566 2129984 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: ppu:PP_4376 flagellar cap protein FliD; flagellar hook-associated 2 domain-containing protein complement(2128566..2129984) Stenotrophomonas maltophilia R551-3 6475917 YP_002028280.1 CDS Smal_1893 NC_011071.1 2130426 2131604 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2130426..2131604) Stenotrophomonas maltophilia R551-3 6475918 YP_002028281.1 CDS Smal_1894 NC_011071.1 2131691 2132878 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2131691..2132878) Stenotrophomonas maltophilia R551-3 6475919 YP_002028282.1 CDS Smal_1895 NC_011071.1 2132951 2134168 R structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus; flagellin complement(2132951..2134168) Stenotrophomonas maltophilia R551-3 6475920 YP_002028283.1 CDS flgL NC_011071.1 2134586 2135788 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(2134586..2135788) Stenotrophomonas maltophilia R551-3 6475921 YP_002028284.1 CDS flgK NC_011071.1 2135785 2137665 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(2135785..2137665) Stenotrophomonas maltophilia R551-3 6475922 YP_002028285.1 CDS flgJ NC_011071.1 2137674 2138873 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(2137674..2138873) Stenotrophomonas maltophilia R551-3 6475923 YP_002028286.1 CDS flgI NC_011071.1 2138875 2140005 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(2138875..2140005) Stenotrophomonas maltophilia R551-3 6475924 YP_002028287.1 CDS flgH NC_011071.1 2140014 2140706 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(2140014..2140706) Stenotrophomonas maltophilia R551-3 6475925 YP_002028288.1 CDS flgG NC_011071.1 2140729 2141514 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(2140729..2141514) Stenotrophomonas maltophilia R551-3 6475926 YP_002028289.1 CDS flgF NC_011071.1 2141617 2142366 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(2141617..2142366) Stenotrophomonas maltophilia R551-3 6475927 YP_002028290.1 CDS flgE NC_011071.1 2142399 2143622 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(2142399..2143622) Stenotrophomonas maltophilia R551-3 6475928 YP_002028291.1 CDS flgD NC_011071.1 2143655 2144338 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein complement(2143655..2144338) Stenotrophomonas maltophilia R551-3 6475929 YP_002028292.1 CDS flgC NC_011071.1 2144362 2144769 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(2144362..2144769) Stenotrophomonas maltophilia R551-3 6475930 YP_002028293.1 CDS flgB NC_011071.1 2144773 2145168 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(2144773..2145168) Stenotrophomonas maltophilia R551-3 6475931 YP_002028294.1 CDS Smal_1907 NC_011071.1 2145318 2146262 R PFAM: response regulator receiver; CheW domain protein; KEGG: xcb:XC_2233 chemotaxis protein; response regulator receiver modulated CheW protein complement(2145318..2146262) Stenotrophomonas maltophilia R551-3 6475932 YP_002028295.1 CDS flgA NC_011071.1 2146474 2147130 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2146474..2147130 Stenotrophomonas maltophilia R551-3 6475933 YP_002028296.1 CDS Smal_1909 NC_011071.1 2147206 2147511 D KEGG: xcb:XC_2231 flagellar protein; putative anti-sigma-28 factor FlgM 2147206..2147511 Stenotrophomonas maltophilia R551-3 6475934 YP_002028297.1 CDS Smal_1910 NC_011071.1 2147508 2147846 D KEGG: xac:XAC1990 hypothetical protein; hypothetical protein 2147508..2147846 Stenotrophomonas maltophilia R551-3 6475935 YP_002028298.1 CDS Smal_1911 NC_011071.1 2147938 2149158 D PFAM: ATP-binding region ATPase domain protein; KEGG: xom:XOO_2423 histidine kinase; histidine kinase 2147938..2149158 Stenotrophomonas maltophilia R551-3 6475936 YP_002028299.1 CDS Smal_1912 NC_011071.1 2149252 2151024 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xom:XOO_2422 C-di-GMP phosphodiesterase A; cyclic nucleotide-binding protein complement(2149252..2151024) Stenotrophomonas maltophilia R551-3 6475937 YP_002028300.1 CDS Smal_1913 NC_011071.1 2151029 2153131 R KEGG: xcb:XC_2227 HrpX related protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2151029..2153131) Stenotrophomonas maltophilia R551-3 6475938 YP_002028301.1 CDS Smal_1914 NC_011071.1 2153263 2156022 D KEGG: xcv:XCV2041 putative signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2153263..2156022 Stenotrophomonas maltophilia R551-3 6475939 YP_002028302.1 CDS Smal_1915 NC_011071.1 2156140 2156667 R KEGG: xcb:XC_3797 hypothetical protein; hypothetical protein complement(2156140..2156667) Stenotrophomonas maltophilia R551-3 6475940 YP_002028303.1 CDS Smal_1916 NC_011071.1 2156735 2157049 R KEGG: scl:sce2419 putative DnaJ class molecular chaperone; hypothetical protein complement(2156735..2157049) Stenotrophomonas maltophilia R551-3 6475941 YP_002028304.1 CDS Smal_1917 NC_011071.1 2157055 2158245 R PFAM: chemotaxis sensory transducer; KEGG: xac:XAC1996 chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2157055..2158245) Stenotrophomonas maltophilia R551-3 6475942 YP_002028305.1 CDS Smal_1918 NC_011071.1 2158411 2159025 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2158411..2159025) Stenotrophomonas maltophilia R551-3 6475943 YP_002028306.1 CDS mnmA NC_011071.1 2159022 2160164 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2159022..2160164) Stenotrophomonas maltophilia R551-3 6475944 YP_002028307.1 CDS Smal_1920 NC_011071.1 2160161 2160622 R PFAM: NUDIX hydrolase; KEGG: xcv:XCV2047 NUDIX hydrolase family protein; NUDIX hydrolase complement(2160161..2160622) Stenotrophomonas maltophilia R551-3 6475945 YP_002028308.1 CDS Smal_1921 NC_011071.1 2160624 2161097 R KEGG: tel:tlr0323 unknown protein; hypothetical protein complement(2160624..2161097) Stenotrophomonas maltophilia R551-3 6475946 YP_002028309.1 CDS Smal_1922 NC_011071.1 2161210 2161536 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: xcv:XCV2048 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 2161210..2161536 Stenotrophomonas maltophilia R551-3 6475947 YP_002028310.1 CDS Smal_1923 NC_011071.1 2161617 2162429 R PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: spe:Spro_2227 aminoglycoside/hydroxyurea antibiotic resistance kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase complement(2161617..2162429) Stenotrophomonas maltophilia R551-3 6475948 YP_002028311.1 CDS Smal_1924 NC_011071.1 2162568 2164853 D KEGG: xac:XAC2001 ATP-dependent Clp protease subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2162568..2164853 Stenotrophomonas maltophilia R551-3 6476031 YP_002028312.1 CDS Smal_1925 NC_011071.1 2164929 2165312 R hypothetical protein complement(2164929..2165312) Stenotrophomonas maltophilia R551-3 6476032 YP_002028313.1 CDS Smal_1926 NC_011071.1 2165441 2165713 R hypothetical protein complement(2165441..2165713) Stenotrophomonas maltophilia R551-3 6476033 YP_002028314.1 CDS infA NC_011071.1 2165885 2166103 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2165885..2166103) Stenotrophomonas maltophilia R551-3 6476034 YP_002028315.1 CDS aat NC_011071.1 2166190 2166930 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2166190..2166930) Stenotrophomonas maltophilia R551-3 6476035 YP_002028316.1 CDS Smal_1929 NC_011071.1 2167003 2168271 D KEGG: ccv:CCV52592_1566 hypothetical protein; hypothetical protein 2167003..2168271 Stenotrophomonas maltophilia R551-3 6476036 YP_002028317.1 CDS Smal_1930 NC_011071.1 2168449 2169573 R PFAM: protein of unknown function DUF482; KEGG: xom:XOO_2407 hypothetical protein; hypothetical protein complement(2168449..2169573) Stenotrophomonas maltophilia R551-3 6476037 YP_002028318.1 CDS Smal_1931 NC_011071.1 2169742 2171262 D PFAM: cell wall hydrolase/autolysin; KEGG: xac:XAC3279 hypothetical protein; cell wall hydrolase/autolysin 2169742..2171262 Stenotrophomonas maltophilia R551-3 6476038 YP_002028319.1 CDS Smal_1932 NC_011071.1 2171344 2172315 R KEGG: xcb:XC_2214 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(2171344..2172315) Stenotrophomonas maltophilia R551-3 6476039 YP_002028320.1 CDS Smal_1933 NC_011071.1 2172548 2174908 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: xcb:XC_2213 cell division protein; cell division protein FtsK 2172548..2174908 Stenotrophomonas maltophilia R551-3 6476040 YP_002028321.1 CDS Smal_1934 NC_011071.1 2174948 2176891 D KEGG: spe:Spro_2485 hypothetical protein; hypothetical protein 2174948..2176891 Stenotrophomonas maltophilia R551-3 6476041 YP_002028322.1 CDS lolA NC_011071.1 2177003 2177641 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2177003..2177641 Stenotrophomonas maltophilia R551-3 6476042 YP_002028323.1 CDS Smal_1936 NC_011071.1 2177876 2179237 D PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcb:XC_2209 recombination factor protein RarA; recombination factor protein RarA 2177876..2179237 Stenotrophomonas maltophilia R551-3 6476043 YP_002028324.1 CDS Smal_1937 NC_011071.1 2179436 2179798 D PFAM: protein of unknown function DUF805; KEGG: nar:Saro_1148 protein of unknown function DUF805; hypothetical protein 2179436..2179798 Stenotrophomonas maltophilia R551-3 6476044 YP_002028325.1 CDS Smal_1938 NC_011071.1 2179872 2180246 R KEGG: pen:PSEEN4324 hypothetical protein; hypothetical protein complement(2179872..2180246) Stenotrophomonas maltophilia R551-3 6476045 YP_002028326.1 CDS Smal_1939 NC_011071.1 2180529 2181557 D PFAM: putative esterase; KEGG: ppw:PputW619_0583 putative esterase; putative esterase 2180529..2181557 Stenotrophomonas maltophilia R551-3 6476046 YP_002028327.1 CDS Smal_1940 NC_011071.1 2181680 2183056 D KEGG: pde:Pden_2566 hypothetical protein; hypothetical protein 2181680..2183056 Stenotrophomonas maltophilia R551-3 6476047 YP_002028328.1 CDS Smal_1941 NC_011071.1 2183108 2184157 D PFAM: periplasmic binding protein; KEGG: cau:Caur_2428 periplasmic binding protein; periplasmic binding protein 2183108..2184157 Stenotrophomonas maltophilia R551-3 6476048 YP_002028329.1 CDS Smal_1942 NC_011071.1 2184154 2185197 D PFAM: transport system permease protein; KEGG: tfu:Tfu_2385 FecCD-family membrane transport protein; transport system permease 2184154..2185197 Stenotrophomonas maltophilia R551-3 6476049 YP_002028330.1 CDS Smal_1943 NC_011071.1 2185194 2185955 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa29260 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2185194..2185955 Stenotrophomonas maltophilia R551-3 6476050 YP_002028331.1 CDS Smal_1944 NC_011071.1 2186020 2186769 D hypothetical protein 2186020..2186769 Stenotrophomonas maltophilia R551-3 6476051 YP_002028332.1 CDS Smal_1945 NC_011071.1 2187210 2189246 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: syn:sll1098 elongation factor EF-G 2; translation elongation factor G 2187210..2189246 Stenotrophomonas maltophilia R551-3 6476052 YP_002028333.1 CDS Smal_1946 NC_011071.1 2189478 2189750 D hypothetical protein 2189478..2189750 Stenotrophomonas maltophilia R551-3 6476053 YP_002028334.1 CDS Smal_1947 NC_011071.1 2189861 2190616 D PFAM: SapC family protein; KEGG: bav:BAV1948 SapC-related protein; SapC family protein 2189861..2190616 Stenotrophomonas maltophilia R551-3 6476054 YP_002028335.1 CDS Smal_1948 NC_011071.1 2190617 2192800 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cvi:CV_2400 sensor protein EvgS precursor; histidine kinase complement(2190617..2192800) Stenotrophomonas maltophilia R551-3 6476055 YP_002028336.1 CDS Smal_1949 NC_011071.1 2192941 2193567 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bam:Bamb_2835 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2192941..2193567) Stenotrophomonas maltophilia R551-3 6476056 YP_002028337.1 CDS Smal_1950 NC_011071.1 2193737 2194270 R PFAM: Lipocalin family protein; KEGG: xom:XOO_0248 outer membrane lipoprotein; lipocalin family protein complement(2193737..2194270) Stenotrophomonas maltophilia R551-3 6476057 YP_002028338.1 CDS Smal_1951 NC_011071.1 2194279 2195352 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2913 hypothetical protein; type 11 methyltransferase complement(2194279..2195352) Stenotrophomonas maltophilia R551-3 6476058 YP_002028339.1 CDS Smal_1952 NC_011071.1 2195349 2196134 R PFAM: protein of unknown function DUF1295; KEGG: xcb:XC_2912 hypothetical protein; hypothetical protein complement(2195349..2196134) Stenotrophomonas maltophilia R551-3 6476059 YP_002028340.1 CDS Smal_1953 NC_011071.1 2196131 2196691 R KEGG: xom:XOO_1811 hypothetical protein; hypothetical protein complement(2196131..2196691) Stenotrophomonas maltophilia R551-3 6476060 YP_002028341.1 CDS Smal_1954 NC_011071.1 2196681 2197940 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_2910 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(2196681..2197940) Stenotrophomonas maltophilia R551-3 6476061 YP_002028342.1 CDS Smal_1955 NC_011071.1 2197937 2198704 R PFAM: protein of unknown function DUF1365; KEGG: xcb:XC_2909 hypothetical protein; hypothetical protein complement(2197937..2198704) Stenotrophomonas maltophilia R551-3 6476062 YP_002028343.1 CDS Smal_1956 NC_011071.1 2198701 2199978 R PFAM: amine oxidase; KEGG: xcb:XC_2908 dehydrogenase; amine oxidase complement(2198701..2199978) Stenotrophomonas maltophilia R551-3 6476063 YP_002028344.1 CDS Smal_1957 NC_011071.1 2199980 2200930 R PFAM: fatty acid desaturase; KEGG: xcb:XC_2907 delta 9 acyl-lipid fatty acid desaturase; stearoyl-CoA 9-desaturase complement(2199980..2200930) Stenotrophomonas maltophilia R551-3 6476064 YP_002028345.1 CDS Smal_1958 NC_011071.1 2201012 2201779 R KEGG: xcb:XC_2903 hypothetical protein; hypothetical protein complement(2201012..2201779) Stenotrophomonas maltophilia R551-3 6476065 YP_002028346.1 CDS Smal_1959 NC_011071.1 2201910 2202533 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2201910..2202533 Stenotrophomonas maltophilia R551-3 6476066 YP_002028347.1 CDS Smal_1960 NC_011071.1 2202566 2203210 D TIGRFAM: anti-sigma factor, , ChrR family; KEGG: psp:PSPPH_0926 transcriptional activator ChrR; anti-ECF sigma factor ChrR 2202566..2203210 Stenotrophomonas maltophilia R551-3 6476067 YP_002028348.1 CDS Smal_1961 NC_011071.1 2203232 2203915 D KEGG: rpe:RPE_4489 hypothetical protein; hypothetical protein 2203232..2203915 Stenotrophomonas maltophilia R551-3 6476068 YP_002028349.1 CDS Smal_1962 NC_011071.1 2203945 2204430 R PFAM: TspO/MBR family protein; KEGG: net:Neut_1064 TspO and MBR like proteins; TspO and MBR-like protein complement(2203945..2204430) Stenotrophomonas maltophilia R551-3 6476069 YP_002028350.1 CDS Smal_1963 NC_011071.1 2204503 2206698 R KEGG: xcb:XC_0551 hypothetical protein; hypothetical protein complement(2204503..2206698) Stenotrophomonas maltophilia R551-3 6476070 YP_002028351.1 CDS Smal_1964 NC_011071.1 2206831 2207310 D PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_1642 acetyltransferase; N-acetyltransferase GCN5 2206831..2207310 Stenotrophomonas maltophilia R551-3 6476071 YP_002028352.1 CDS Smal_1965 NC_011071.1 2207385 2207993 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: bur:Bcep18194_C7380 (acyl-carrier protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(2207385..2207993) Stenotrophomonas maltophilia R551-3 6476072 YP_002028353.1 CDS Smal_1966 NC_011071.1 2208300 2208722 D PFAM: DoxX family protein; KEGG: neu:NE1546 hypothetical protein; DoxX family protein 2208300..2208722 Stenotrophomonas maltophilia R551-3 6476073 YP_002028354.1 CDS Smal_1967 NC_011071.1 2208812 2209705 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_0040 transcriptional regulator LysR family; LysR family transcriptional regulator 2208812..2209705 Stenotrophomonas maltophilia R551-3 6476074 YP_002028355.1 CDS Smal_1968 NC_011071.1 2209872 2210744 D PFAM: Pirin domain protein; KEGG: cvi:CV_3253 probable pirin-related protein; Pirin domain-containing protein 2209872..2210744 Stenotrophomonas maltophilia R551-3 6476075 YP_002028356.1 CDS Smal_1969 NC_011071.1 2210785 2211633 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sus:Acid_0395 transcriptional regulator, fis family; AraC family transcriptional regulator complement(2210785..2211633) Stenotrophomonas maltophilia R551-3 6476076 YP_002028357.1 CDS Smal_1970 NC_011071.1 2211724 2212185 D KEGG: mmr:Mmar10_2831 hypothetical protein; hypothetical protein 2211724..2212185 Stenotrophomonas maltophilia R551-3 6476077 YP_002028358.1 CDS Smal_1971 NC_011071.1 2212577 2213482 R KEGG: xcv:XCVd0070 putative cointegrate resolution protein T; putative cointegrate resolution protein T complement(2212577..2213482) Stenotrophomonas maltophilia R551-3 6476078 YP_002028359.1 CDS Smal_1972 NC_011071.1 2213586 2214665 D PFAM: integrase family protein; KEGG: xcv:XCVd0071 phage integrase family protein; integrase family protein 2213586..2214665 Stenotrophomonas maltophilia R551-3 6476079 YP_002028360.1 CDS Smal_1973 NC_011071.1 2214814 2216661 D KEGG: hsl:OE2743F hypothetical protein; hypothetical protein 2214814..2216661 Stenotrophomonas maltophilia R551-3 6476080 YP_002028361.1 CDS Smal_1974 NC_011071.1 2216658 2218235 D KEGG: rpd:RPD_3631 conserved hypothetical protein, interruption-N; hypothetical protein 2216658..2218235 Stenotrophomonas maltophilia R551-3 6476081 YP_002028362.1 CDS Smal_1975 NC_011071.1 2218340 2219203 R KEGG: pat:Patl_1415 hypothetical protein; hypothetical protein complement(2218340..2219203) Stenotrophomonas maltophilia R551-3 6476082 YP_002028363.1 CDS Smal_1976 NC_011071.1 2219739 2220941 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: bav:BAV1573 chromate transporter; chromate transporter complement(2219739..2220941) Stenotrophomonas maltophilia R551-3 6476083 YP_002028364.1 CDS Smal_1977 NC_011071.1 2220996 2221415 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: xau:Xaut_0876 arsenate reductase; arsenate reductase complement(2220996..2221415) Stenotrophomonas maltophilia R551-3 6476084 YP_002028365.1 CDS Smal_1978 NC_011071.1 2221412 2222152 R TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: bxe:Bxe_B0301 putative arsinic resistance protein ArsH; arsenical resistance protein ArsH complement(2221412..2222152) Stenotrophomonas maltophilia R551-3 6476085 YP_002028366.1 CDS Smal_1979 NC_011071.1 2222193 2222507 D PFAM: regulatory protein ArsR; KEGG: rme:Rmet_0333 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2222193..2222507 Stenotrophomonas maltophilia R551-3 6476086 YP_002028367.1 CDS Smal_1980 NC_011071.1 2222532 2223023 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rle:RL2884 putative arsenate reductase; protein tyrosine phosphatase 2222532..2223023 Stenotrophomonas maltophilia R551-3 6476087 YP_002028368.1 CDS Smal_1981 NC_011071.1 2223044 2224102 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: oan:Oant_3198 arsenical-resistance protein; arsenical-resistance protein 2223044..2224102 Stenotrophomonas maltophilia R551-3 6476088 YP_002028369.1 CDS Smal_1982 NC_011071.1 2224106 2225092 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xcb:XC_2214 thioredoxin reductase; thioredoxin reductase 2224106..2225092 Stenotrophomonas maltophilia R551-3 6476089 YP_002028370.1 CDS Smal_1983 NC_011071.1 2225117 2226202 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: psa:PST_2095 monooxygenase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2225117..2226202 Stenotrophomonas maltophilia R551-3 6476090 YP_002028371.1 CDS Smal_1984 NC_011071.1 2226163 2226696 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: psa:PST_0236 arsenate reductase, putative; protein tyrosine phosphatase complement(2226163..2226696) Stenotrophomonas maltophilia R551-3 6476091 YP_002028372.1 CDS Smal_1985 NC_011071.1 2227127 2227669 R KEGG: cya:CYA_1240 cytochrome c assembly protein; hypothetical protein complement(2227127..2227669) Stenotrophomonas maltophilia R551-3 6476092 YP_002028373.1 CDS Smal_1986 NC_011071.1 2227837 2228592 D KEGG: rso:RSc0994 probable transmembrane protein; putative transmembrane protein 2227837..2228592 Stenotrophomonas maltophilia R551-3 6476093 YP_002028374.1 CDS Smal_1987 NC_011071.1 2229049 2229405 D hypothetical protein 2229049..2229405 Stenotrophomonas maltophilia R551-3 6476094 YP_002028375.1 CDS Smal_1988 NC_011071.1 2229646 2229876 D hypothetical protein 2229646..2229876 Stenotrophomonas maltophilia R551-3 6476095 YP_002028376.1 CDS Smal_1989 NC_011071.1 2229981 2230607 R KEGG: xcb:XC_1389 hypothetical protein; hypothetical protein complement(2229981..2230607) Stenotrophomonas maltophilia R551-3 6476096 YP_002028377.1 CDS Smal_1990 NC_011071.1 2230583 2231644 R PFAM: protein of unknown function DUF182; KEGG: gka:GK0381 hypothetical protein; hypothetical protein complement(2230583..2231644) Stenotrophomonas maltophilia R551-3 6476097 YP_002028378.1 CDS Smal_1991 NC_011071.1 2231654 2233858 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bra:BRADO2884 putative xanthine dehydrogenase, molybdenum binding subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(2231654..2233858) Stenotrophomonas maltophilia R551-3 6476098 YP_002028379.1 CDS Smal_1992 NC_011071.1 2233858 2234808 R PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: aav:Aave_1486 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding complement(2233858..2234808) Stenotrophomonas maltophilia R551-3 6476099 YP_002028380.1 CDS Smal_1993 NC_011071.1 2234805 2235452 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rpc:RPC_1133 putative xanthine dehydrogenase iron-sulfur-binding subunit; putative xanthine dehydrogenase iron-sulfur-binding subunit complement(2234805..2235452) Stenotrophomonas maltophilia R551-3 6476100 YP_002028381.1 CDS Smal_1994 NC_011071.1 2235933 2236448 R PFAM: OsmC family protein; KEGG: bch:Bcen2424_5605 OsmC family protein; OsmC family protein complement(2235933..2236448) Stenotrophomonas maltophilia R551-3 6476101 YP_002028382.1 CDS Smal_1995 NC_011071.1 2236471 2237238 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: reh:H16_B1984 hypothetical protein; NmrA family protein complement(2236471..2237238) Stenotrophomonas maltophilia R551-3 6476173 YP_002028383.1 CDS Smal_1996 NC_011071.1 2237377 2238408 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bph:Bphy_6638 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2237377..2238408) Stenotrophomonas maltophilia R551-3 6476174 YP_002028384.1 CDS Smal_1997 NC_011071.1 2238405 2238713 R PFAM: Sigma-70 region 4 type 2; KEGG: rpa:RPA1116 RNA polymerase sigma factor SigJ; ECF subfamily RNA polymerase sigma-24 subunit complement(2238405..2238713) Stenotrophomonas maltophilia R551-3 6476175 YP_002028385.1 CDS Smal_1998 NC_011071.1 2238803 2239282 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB3699 hypothetical protein; alkylhydroperoxidase-like protein 2238803..2239282 Stenotrophomonas maltophilia R551-3 6476176 YP_002028386.1 CDS Smal_1999 NC_011071.1 2239338 2239742 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: reh:H16_B1404 hypothetical protein; cupin 2239338..2239742 Stenotrophomonas maltophilia R551-3 6476177 YP_002028387.1 CDS Smal_2000 NC_011071.1 2239818 2240699 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pol:Bpro_2922 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit 2239818..2240699 Stenotrophomonas maltophilia R551-3 6476178 YP_002028388.1 CDS Smal_2001 NC_011071.1 2240814 2241734 R PFAM: beta-lactamase domain protein; KEGG: rle:RL2294 putative beta-lactamase/hydrolase; beta-lactamase domain-containing protein complement(2240814..2241734) Stenotrophomonas maltophilia R551-3 6476179 YP_002028389.1 CDS Smal_2002 NC_011071.1 2242006 2242482 R PFAM: protein of unknown function DUF1348; KEGG: xcv:XCV4431 hypothetical protein; hypothetical protein complement(2242006..2242482) Stenotrophomonas maltophilia R551-3 6476180 YP_002028390.1 CDS Smal_2003 NC_011071.1 2242545 2243114 R PFAM: regulatory protein TetR; KEGG: xcv:XCV4432 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2242545..2243114) Stenotrophomonas maltophilia R551-3 6476181 YP_002028391.1 CDS Smal_2004 NC_011071.1 2243283 2244236 D PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_0170 non-heme chloroperoxidase; alpha/beta hydrolase fold domain-containing protein 2243283..2244236 Stenotrophomonas maltophilia R551-3 6476182 YP_002028392.1 CDS Smal_2005 NC_011071.1 2244352 2244933 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2244352..2244933) Stenotrophomonas maltophilia R551-3 6476183 YP_002028393.1 CDS Smal_2006 NC_011071.1 2245106 2246200 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ent:Ent638_2277 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2245106..2246200 Stenotrophomonas maltophilia R551-3 6476184 YP_002028394.1 CDS Smal_2007 NC_011071.1 2246264 2247052 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bac:BamMC406_5270 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2246264..2247052 Stenotrophomonas maltophilia R551-3 6476185 YP_002028395.1 CDS Smal_2008 NC_011071.1 2247096 2248097 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2803 oxidoreductase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein 2247096..2248097 Stenotrophomonas maltophilia R551-3 6476186 YP_002028396.1 CDS Smal_2009 NC_011071.1 2248194 2250836 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: har:HEAR2032 putative excinuclease ABC subunit A2 UvrA; excinuclease ABC subunit A complement(2248194..2250836) Stenotrophomonas maltophilia R551-3 6476187 YP_002028397.1 CDS Smal_2010 NC_011071.1 2250975 2251862 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cti:RALTA_B0300 putative transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2250975..2251862) Stenotrophomonas maltophilia R551-3 6476188 YP_002028398.1 CDS Smal_2011 NC_011071.1 2252030 2253259 D PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_5629 major facilitator superfamily MFS_1; major facilitator superfamily protein 2252030..2253259 Stenotrophomonas maltophilia R551-3 6476189 YP_002028399.1 CDS Smal_2012 NC_011071.1 2253271 2254257 D PFAM: aldo/keto reductase; KEGG: xfa:XF1724 sugar-phosphate dehydrogenase; aldo/keto reductase 2253271..2254257 Stenotrophomonas maltophilia R551-3 6476190 YP_002028400.1 CDS Smal_2013 NC_011071.1 2254283 2254759 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: xcb:XC_1438 hypothetical protein; cupin 2254283..2254759 Stenotrophomonas maltophilia R551-3 6476191 YP_002028401.1 CDS Smal_2014 NC_011071.1 2254756 2255793 D KEGG: sbl:Sbal_0635 conserved hypothetical signal peptide protein; hypothetical protein 2254756..2255793 Stenotrophomonas maltophilia R551-3 6476192 YP_002028402.1 CDS Smal_2015 NC_011071.1 2255815 2257698 R PFAM: PepSY-associated TM helix domain protein; KEGG: xcb:XC_0559 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(2255815..2257698) Stenotrophomonas maltophilia R551-3 6476193 YP_002028403.1 CDS Smal_2016 NC_011071.1 2257745 2260210 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1927 Ton-B dependent siderophore receptor, putative; TonB-dependent siderophore receptor complement(2257745..2260210) Stenotrophomonas maltophilia R551-3 6476194 YP_002028404.1 CDS Smal_2017 NC_011071.1 2260310 2261347 R PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(2260310..2261347) Stenotrophomonas maltophilia R551-3 6476195 YP_002028405.1 CDS Smal_2018 NC_011071.1 2261344 2262030 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_47400 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(2261344..2262030) Stenotrophomonas maltophilia R551-3 6476196 YP_002028406.1 CDS Smal_2019 NC_011071.1 2262151 2262831 R KEGG: rpc:RPC_3028 hypothetical protein; hypothetical protein complement(2262151..2262831) Stenotrophomonas maltophilia R551-3 6476197 YP_002028407.1 CDS Smal_2020 NC_011071.1 2263097 2263507 R KEGG: stm:STM2697 phage tail-like protein; hypothetical protein complement(2263097..2263507) Stenotrophomonas maltophilia R551-3 6476198 YP_002028408.1 CDS Smal_2021 NC_011071.1 2263683 2264873 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcv:XCV2086 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2263683..2264873) Stenotrophomonas maltophilia R551-3 6476199 YP_002028409.1 CDS Smal_2022 NC_011071.1 2265163 2266239 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xfn:XfasM23_0188 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2265163..2266239 Stenotrophomonas maltophilia R551-3 6476200 YP_002028410.1 CDS Smal_2023 NC_011071.1 2266236 2269283 D PFAM: acriflavin resistance protein; KEGG: xac:XAC2799 acriflavin resistance protein; acriflavin resistance protein 2266236..2269283 Stenotrophomonas maltophilia R551-3 6476201 YP_002028411.1 CDS Smal_2024 NC_011071.1 2269283 2270815 D PFAM: outer membrane efflux protein; KEGG: cak:Caul_1086 RND efflux system, outer membrane lipoprotein, NodT family; outer membrane efflux protein 2269283..2270815 Stenotrophomonas maltophilia R551-3 6476202 YP_002028412.1 CDS Smal_2025 NC_011071.1 2270877 2271467 D PFAM: regulatory protein TetR; KEGG: nmu:Nmul_A0041 transcriptional regulator, TetR family; TetR family transcriptional regulator 2270877..2271467 Stenotrophomonas maltophilia R551-3 6476203 YP_002028413.1 CDS Smal_2026 NC_011071.1 2271524 2272180 D PFAM: regulatory protein TetR; KEGG: pfo:PflO1_1281 transcriptional regulator, TetR family; TetR family transcriptional regulator 2271524..2272180 Stenotrophomonas maltophilia R551-3 6476204 YP_002028414.1 CDS Smal_2027 NC_011071.1 2272190 2273500 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2272190..2273500) Stenotrophomonas maltophilia R551-3 6476205 YP_002028415.1 CDS Smal_2028 NC_011071.1 2273739 2274146 R KEGG: xoo:XOO2199 hypothetical protein; hypothetical protein complement(2273739..2274146) Stenotrophomonas maltophilia R551-3 6476206 YP_002028416.1 CDS Smal_2029 NC_011071.1 2274179 2275192 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcb:XC_1745 transcriptional regulator LacI family; LacI family transcriptional regulator complement(2274179..2275192) Stenotrophomonas maltophilia R551-3 6476207 YP_002028417.1 CDS Smal_2030 NC_011071.1 2275351 2277861 D TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: xac:XAC2501 multiphosphoryl transfer protein; phosphoenolpyruvate-protein phosphotransferase 2275351..2277861 Stenotrophomonas maltophilia R551-3 6476208 YP_002028418.1 CDS Smal_2031 NC_011071.1 2277858 2278814 D KEGG: xac:XAC2502 1-phosphofructokinase (fructose 1-phosphate kinase); TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 2277858..2278814 Stenotrophomonas maltophilia R551-3 6476209 YP_002028419.1 CDS Smal_2032 NC_011071.1 2278901 2280607 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: xom:XOO_2652 PTS system fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 2278901..2280607 Stenotrophomonas maltophilia R551-3 6476210 YP_002028420.1 CDS Smal_2033 NC_011071.1 2280622 2281875 D PFAM: Carbohydrate-selective porin OprB; KEGG: xoo:XOO2813 regulator of pathogenicity factors; carbohydrate-selective porin OprB 2280622..2281875 Stenotrophomonas maltophilia R551-3 6476211 YP_002028421.1 CDS Smal_2034 NC_011071.1 2282011 2282571 D PFAM: beta-Ig-H3/fasciclin; KEGG: xom:XOO_0610 hypothetical protein; beta-Ig-H3/fasciclin 2282011..2282571 Stenotrophomonas maltophilia R551-3 6476212 YP_002028422.1 CDS Smal_2035 NC_011071.1 2282710 2283231 R KEGG: ent:Ent638_3124 hypothetical protein; hypothetical protein complement(2282710..2283231) Stenotrophomonas maltophilia R551-3 6476213 YP_002028423.1 CDS Smal_2036 NC_011071.1 2283328 2284164 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: swd:Swoo_3247 peptidase S1 and S6 chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap complement(2283328..2284164) Stenotrophomonas maltophilia R551-3 6476214 YP_002028424.1 CDS Smal_2037 NC_011071.1 2284354 2284632 D KEGG: xac:XAC2135 hypothetical protein; hypothetical protein 2284354..2284632 Stenotrophomonas maltophilia R551-3 6476215 YP_002028425.1 CDS Smal_2038 NC_011071.1 2284664 2285533 R PFAM: methylenetetrahydrofolate reductase; KEGG: dac:Daci_2669 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(2284664..2285533) Stenotrophomonas maltophilia R551-3 6476216 YP_002028426.1 CDS Smal_2039 NC_011071.1 2285533 2286447 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV0342 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2285533..2286447) Stenotrophomonas maltophilia R551-3 6476217 YP_002028427.1 CDS Smal_2040 NC_011071.1 2286624 2287205 D PFAM: NADPH-dependent FMN reductase; KEGG: dac:Daci_2548 FMN reductase; FMN reductase 2286624..2287205 Stenotrophomonas maltophilia R551-3 6476218 YP_002028428.1 CDS Smal_2041 NC_011071.1 2287264 2288241 D PFAM: Domain of unknown function DUF1852; KEGG: bur:Bcep18194_C7370 hypothetical protein; hypothetical protein 2287264..2288241 Stenotrophomonas maltophilia R551-3 6476219 YP_002028429.1 CDS Smal_2042 NC_011071.1 2288280 2289314 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2288280..2289314 Stenotrophomonas maltophilia R551-3 6476220 YP_002028430.1 CDS Smal_2043 NC_011071.1 2289271 2289894 R KEGG: ptr:747020 hypothetical protein LOC747020; hypothetical protein complement(2289271..2289894) Stenotrophomonas maltophilia R551-3 6476221 YP_002028431.1 CDS Smal_2044 NC_011071.1 2289920 2290132 R hypothetical protein complement(2289920..2290132) Stenotrophomonas maltophilia R551-3 6476222 YP_002028432.1 CDS Smal_2045 NC_011071.1 2290379 2291626 D PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: ppg:PputGB1_3669 arsenical pump membrane protein; Arsenical pump membrane protein 2290379..2291626 Stenotrophomonas maltophilia R551-3 6476223 YP_002028433.1 CDS Smal_2046 NC_011071.1 2291661 2293313 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bcm:Bcenmc03_4176 ABC transporter related; ABC transporter-like protein complement(2291661..2293313) Stenotrophomonas maltophilia R551-3 6476224 YP_002028434.1 CDS Smal_2047 NC_011071.1 2293406 2295817 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2600 TonB-dependent receptor; TonB-dependent receptor 2293406..2295817 Stenotrophomonas maltophilia R551-3 6476225 YP_002028435.1 CDS Smal_2048 NC_011071.1 2295826 2297289 D KEGG: gvi:glr3105 hypothetical protein; hypothetical protein 2295826..2297289 Stenotrophomonas maltophilia R551-3 6476226 YP_002028436.1 CDS Smal_2049 NC_011071.1 2297286 2298644 D KEGG: bbt:BBta_3359 putative membrane protein of unknown function; multi- copper enzyme maturation ABC transporter permease-like protein 2297286..2298644 Stenotrophomonas maltophilia R551-3 6476227 YP_002028437.1 CDS Smal_2050 NC_011071.1 2298657 2299367 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_3330 ABC transporter related; ABC transporter-like protein 2298657..2299367 Stenotrophomonas maltophilia R551-3 6476228 YP_002028438.1 CDS Smal_2051 NC_011071.1 2299364 2301205 R PFAM: asparagine synthase; KEGG: cak:Caul_5191 asparagine synthase; asparagine synthase complement(2299364..2301205) Stenotrophomonas maltophilia R551-3 6476229 YP_002028439.1 CDS Smal_2052 NC_011071.1 2301217 2301918 R KEGG: cak:Caul_2240 hypothetical protein; hypothetical protein complement(2301217..2301918) Stenotrophomonas maltophilia R551-3 6476230 YP_002028440.1 CDS Smal_2053 NC_011071.1 2301994 2302155 R hypothetical protein complement(2301994..2302155) Stenotrophomonas maltophilia R551-3 6476231 YP_002028441.1 CDS Smal_2054 NC_011071.1 2302361 2303287 D hypothetical protein 2302361..2303287 Stenotrophomonas maltophilia R551-3 6476232 YP_002028442.1 CDS Smal_2055 NC_011071.1 2303589 2304437 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pap:PSPA7_4421 putative HTH-type transcriptional regulator YeaM; AraC family transcriptional regulator 2303589..2304437 Stenotrophomonas maltophilia R551-3 6476233 YP_002028443.1 CDS Smal_2056 NC_011071.1 2304487 2305491 R TIGRFAM: esterase, PHB depolymerase family; KEGG: mxa:MXAN_7314 esterase, PHB depolymerase family; PHB depolymerase family esterase complement(2304487..2305491) Stenotrophomonas maltophilia R551-3 6476234 YP_002028444.1 CDS Smal_2057 NC_011071.1 2305689 2307875 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL2154 outer membrane protein; TonB-dependent receptor 2305689..2307875 Stenotrophomonas maltophilia R551-3 6476235 YP_002028445.1 CDS Smal_2058 NC_011071.1 2307908 2308786 D PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_3634 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 2307908..2308786 Stenotrophomonas maltophilia R551-3 6476236 YP_002028446.1 CDS Smal_2059 NC_011071.1 2308783 2309268 D PFAM: MaoC domain protein dehydratase; KEGG: mlo:mll1143 nodulation protein N; MaoC domain-containing protein dehydratase 2308783..2309268 Stenotrophomonas maltophilia R551-3 6476237 YP_002028447.1 CDS Smal_2060 NC_011071.1 2309305 2312640 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pae:PA3271 probable two-component sensor; multi-sensor hybrid histidine kinase 2309305..2312640 Stenotrophomonas maltophilia R551-3 6476238 YP_002028448.1 CDS Smal_2061 NC_011071.1 2312645 2313319 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: maq:Maqu_2218 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2312645..2313319) Stenotrophomonas maltophilia R551-3 6476239 YP_002028449.1 CDS Smal_2062 NC_011071.1 2313449 2315089 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_B1335 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; AMP-dependent synthetase and ligase 2313449..2315089 Stenotrophomonas maltophilia R551-3 6476240 YP_002028450.1 CDS Smal_2063 NC_011071.1 2315217 2315708 R KEGG: xac:XAC2495 hypothetical protein; hypothetical protein complement(2315217..2315708) Stenotrophomonas maltophilia R551-3 6476241 YP_002028451.1 CDS Smal_2064 NC_011071.1 2315887 2316630 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mmr:Mmar10_0254 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2315887..2316630) Stenotrophomonas maltophilia R551-3 6476242 YP_002028452.1 CDS Smal_2065 NC_011071.1 2316733 2319624 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2991 hypothetical protein; TonB-dependent receptor complement(2316733..2319624) Stenotrophomonas maltophilia R551-3 6476243 YP_002028453.1 CDS Smal_2066 NC_011071.1 2319866 2321305 D KEGG: pha:PSHAa1749 alginate lyase precursor; alginate lyase 2319866..2321305 Stenotrophomonas maltophilia R551-3 6476244 YP_002028454.1 CDS Smal_2067 NC_011071.1 2321302 2323536 D PFAM: Heparinase II/III family protein; KEGG: sde:Sde_3284 hypothetical protein; heparinase II/III family protein 2321302..2323536 Stenotrophomonas maltophilia R551-3 6476245 YP_002028455.1 CDS Smal_2068 NC_011071.1 2323533 2324837 D PFAM: major facilitator superfamily MFS_1; KEGG: spu:767491 similar to CG3036-PA; major facilitator superfamily protein 2323533..2324837 Stenotrophomonas maltophilia R551-3 6476246 YP_002028456.1 CDS Smal_2069 NC_011071.1 2324898 2325650 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0259 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2324898..2325650 Stenotrophomonas maltophilia R551-3 6476247 YP_002028457.1 CDS Smal_2070 NC_011071.1 2325672 2326859 D PFAM: lipolytic protein G-D-S-L family; KEGG: xcb:XC_0121 hypothetical protein; G-D-S-L family lipolytic protein 2325672..2326859 Stenotrophomonas maltophilia R551-3 6476248 YP_002028458.1 CDS Smal_2071 NC_011071.1 2326870 2327889 D PFAM: PfkB domain protein; KEGG: xcv:XCV0122 2-keto-3-deoxygluconate kinase; PfkB domain-containing protein 2326870..2327889 Stenotrophomonas maltophilia R551-3 6476249 YP_002028459.1 CDS Smal_2072 NC_011071.1 2327907 2328800 R KEGG: sdn:Sden_1685 hypothetical protein; hypothetical protein complement(2327907..2328800) Stenotrophomonas maltophilia R551-3 6476250 YP_002028460.1 CDS Smal_2073 NC_011071.1 2328922 2330373 R KEGG: dac:Daci_3058 hypothetical protein; hypothetical protein complement(2328922..2330373) Stenotrophomonas maltophilia R551-3 6476251 YP_002028461.1 CDS Smal_2074 NC_011071.1 2330461 2332035 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: xcb:XC_3534 hypothetical protein; peptidase S15 complement(2330461..2332035) Stenotrophomonas maltophilia R551-3 6476252 YP_002028462.1 CDS Smal_2075 NC_011071.1 2332283 2333767 R KEGG: sgr:SGR_759 putative secreted serine protease; hypothetical protein complement(2332283..2333767) Stenotrophomonas maltophilia R551-3 6476253 YP_002028463.1 CDS Smal_2076 NC_011071.1 2334582 2335322 D PFAM: DNA/RNA non-specific endonuclease; KEGG: xcb:XC_2580 endonuclease precursor; DNA/RNA non-specific endonuclease 2334582..2335322 Stenotrophomonas maltophilia R551-3 6476254 YP_002028464.1 CDS Smal_2077 NC_011071.1 2335433 2336128 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD-superfamily hydrolase 2335433..2336128 Stenotrophomonas maltophilia R551-3 6476337 YP_002028465.1 CDS Smal_2078 NC_011071.1 2336136 2336366 R KEGG: pla:Plav_0473 hypothetical protein; hypothetical protein complement(2336136..2336366) Stenotrophomonas maltophilia R551-3 6476338 YP_002028466.1 CDS Smal_2079 NC_011071.1 2336363 2336788 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A1507 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(2336363..2336788) Stenotrophomonas maltophilia R551-3 6476339 YP_002028467.1 CDS Smal_2080 NC_011071.1 2337026 2339503 D PFAM: aminotransferase class V; MCP methyltransferase CheR-type; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1950 hypothetical protein; CheR-type MCP methyltransferase 2337026..2339503 Stenotrophomonas maltophilia R551-3 6476340 YP_002028468.1 CDS Smal_2081 NC_011071.1 2339547 2340008 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A1506 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2339547..2340008) Stenotrophomonas maltophilia R551-3 6476341 YP_002028469.1 CDS Smal_2082 NC_011071.1 2340005 2340931 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_3951 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2340005..2340931) Stenotrophomonas maltophilia R551-3 6476342 YP_002028470.1 CDS Smal_2083 NC_011071.1 2341022 2342062 D KEGG: aba:Acid345_2173 hypothetical protein; hypothetical protein 2341022..2342062 Stenotrophomonas maltophilia R551-3 6476343 YP_002028471.1 CDS Smal_2084 NC_011071.1 2342059 2342940 D PFAM: WD40 domain protein beta Propeller; KEGG: xcb:XC_4042 hypothetical protein; WD40 domain-containing protein 2342059..2342940 Stenotrophomonas maltophilia R551-3 6476344 YP_002028472.1 CDS Smal_2085 NC_011071.1 2343009 2343545 D KEGG: mxa:MXAN_2139 hypothetical protein; hypothetical protein 2343009..2343545 Stenotrophomonas maltophilia R551-3 6476345 YP_002028473.1 CDS Smal_2086 NC_011071.1 2343538 2343846 D KEGG: jan:Jann_2414 hypothetical protein; hypothetical protein 2343538..2343846 Stenotrophomonas maltophilia R551-3 6476346 YP_002028474.1 CDS Smal_2087 NC_011071.1 2343847 2345202 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ppw:PputW619_2769 sigma54 specific transcriptional regulator, fis family; Fis family sigma-54 specific transcriptional regulator complement(2343847..2345202) Stenotrophomonas maltophilia R551-3 6476347 YP_002028475.1 CDS Smal_2088 NC_011071.1 2345599 2346132 D KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 2345599..2346132 Stenotrophomonas maltophilia R551-3 6476348 YP_002028476.1 CDS Smal_2089 NC_011071.1 2346129 2346746 D KEGG: pfl:PFL_3119 hypothetical protein; hypothetical protein 2346129..2346746 Stenotrophomonas maltophilia R551-3 6476349 YP_002028477.1 CDS Smal_2090 NC_011071.1 2346790 2348106 D KEGG: swd:Swoo_4128 hypothetical protein; hypothetical protein 2346790..2348106 Stenotrophomonas maltophilia R551-3 6476350 YP_002028478.1 CDS Smal_2091 NC_011071.1 2348206 2348910 D PFAM: peptidase C39 bacteriocin processing; KEGG: ppw:PputW619_2765 peptidase C39 bacteriocin processing; peptidase C39 bacteriocin processing 2348206..2348910 Stenotrophomonas maltophilia R551-3 6476351 YP_002028479.1 CDS Smal_2092 NC_011071.1 2348924 2349673 D KEGG: pae:PA1952 hypothetical protein; hypothetical protein 2348924..2349673 Stenotrophomonas maltophilia R551-3 6476352 YP_002028480.1 CDS Smal_2093 NC_011071.1 2349720 2351012 D KEGG: cvi:CV_0689 hypothetical protein; hypothetical protein 2349720..2351012 Stenotrophomonas maltophilia R551-3 6476353 YP_002028481.1 CDS Smal_2094 NC_011071.1 2351201 2352724 D hypothetical protein 2351201..2352724 Stenotrophomonas maltophilia R551-3 6476354 YP_002028482.1 CDS Smal_2095 NC_011071.1 2352816 2353886 D PFAM: NUDIX hydrolase; KEGG: ptr:465814 angiomotin; NUDIX hydrolase 2352816..2353886 Stenotrophomonas maltophilia R551-3 6476355 YP_002028483.1 CDS Smal_2096 NC_011071.1 2354108 2354398 D KEGG: xac:XAC3014 RebB protein; RebB protein 2354108..2354398 Stenotrophomonas maltophilia R551-3 6476356 YP_002028484.1 CDS Smal_2097 NC_011071.1 2354442 2354711 D KEGG: xac:XAC3014 RebB protein; RebB protein 2354442..2354711 Stenotrophomonas maltophilia R551-3 6476357 YP_002028485.1 CDS Smal_2098 NC_011071.1 2354738 2355004 D KEGG: xac:XAC3016 RebA protein; RebA protein 2354738..2355004 Stenotrophomonas maltophilia R551-3 6476358 YP_002028486.1 CDS Smal_2099 NC_011071.1 2355065 2355337 D KEGG: xac:XAC3017 RebB protein; RebB protein 2355065..2355337 Stenotrophomonas maltophilia R551-3 6476359 YP_002028487.1 CDS Smal_2100 NC_011071.1 2355408 2355644 D KEGG: xac:XAC3019 hypothetical protein; hypothetical protein 2355408..2355644 Stenotrophomonas maltophilia R551-3 6476360 YP_002028488.1 CDS Smal_2101 NC_011071.1 2355641 2356225 D KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein 2355641..2356225 Stenotrophomonas maltophilia R551-3 6476361 YP_002028489.1 CDS Smal_2102 NC_011071.1 2356273 2356620 D KEGG: xac:XAC3020 hypothetical protein; hypothetical protein 2356273..2356620 Stenotrophomonas maltophilia R551-3 6476362 YP_002028490.1 CDS Smal_2103 NC_011071.1 2356639 2357724 D KEGG: xac:XAC3021 hypothetical protein; hypothetical protein 2356639..2357724 Stenotrophomonas maltophilia R551-3 6476363 YP_002028491.1 CDS Smal_2104 NC_011071.1 2357937 2358173 D KEGG: met:M446_4535 hypothetical protein; hypothetical protein 2357937..2358173 Stenotrophomonas maltophilia R551-3 6476364 YP_002028492.1 CDS Smal_2105 NC_011071.1 2358230 2359723 R PFAM: helix-turn-helix- domain containing protein AraC type; sigma-54 factor interaction domain-containing protein; KEGG: xac:XAC3026 transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(2358230..2359723) Stenotrophomonas maltophilia R551-3 6476365 YP_002028493.1 CDS Smal_2106 NC_011071.1 2360244 2361383 D KEGG: xcb:XC_2139 hypothetical protein; hypothetical protein 2360244..2361383 Stenotrophomonas maltophilia R551-3 6476366 YP_002028494.1 CDS Smal_2107 NC_011071.1 2361404 2362756 D KEGG: xcb:XC_2140 hypothetical protein; hypothetical protein 2361404..2362756 Stenotrophomonas maltophilia R551-3 6476367 YP_002028495.1 CDS Smal_2108 NC_011071.1 2362753 2363010 D KEGG: xcb:XC_2141 hypothetical protein; hypothetical protein 2362753..2363010 Stenotrophomonas maltophilia R551-3 6476368 YP_002028496.1 CDS Smal_2109 NC_011071.1 2363113 2364009 R KEGG: oih:OB2740 hypothetical protein; protein tyrosine/serine phosphatase complement(2363113..2364009) Stenotrophomonas maltophilia R551-3 6476369 YP_002028497.1 CDS Smal_2110 NC_011071.1 2364027 2366324 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_2950 TonB-dependent receptor, plug; TonB-dependent receptor complement(2364027..2366324) Stenotrophomonas maltophilia R551-3 6476370 YP_002028498.1 CDS Smal_2111 NC_011071.1 2366439 2367083 D PFAM: regulatory protein TetR; KEGG: azo:azo0243 putative TetR family transcriptional regulator; TetR family transcriptional regulator 2366439..2367083 Stenotrophomonas maltophilia R551-3 6476371 YP_002028499.1 CDS Smal_2112 NC_011071.1 2367154 2367738 D KEGG: mes:Meso_3393 outer membrane lipoprotein omp19; hypothetical protein 2367154..2367738 Stenotrophomonas maltophilia R551-3 6476372 YP_002028500.1 CDS Smal_2113 NC_011071.1 2367865 2369115 D KEGG: dge:Dgeo_1247 cytochrome c assembly protein; hypothetical protein 2367865..2369115 Stenotrophomonas maltophilia R551-3 6476373 YP_002028501.1 CDS Smal_2114 NC_011071.1 2369287 2370996 D KEGG: xcc:XCC4224 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2369287..2370996 Stenotrophomonas maltophilia R551-3 6476374 YP_002028502.1 CDS Smal_2115 NC_011071.1 2371074 2373017 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: dac:Daci_2316 ABC transporter related; ABC transporter-like protein complement(2371074..2373017) Stenotrophomonas maltophilia R551-3 6476375 YP_002028503.1 CDS Smal_2116 NC_011071.1 2373020 2374201 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dac:Daci_2317 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2373020..2374201) Stenotrophomonas maltophilia R551-3 6476376 YP_002028504.1 CDS Smal_2117 NC_011071.1 2374396 2375007 D KEGG: met:M446_5855 AsmA family protein; hypothetical protein 2374396..2375007 Stenotrophomonas maltophilia R551-3 6476377 YP_002028505.1 CDS Smal_2118 NC_011071.1 2375067 2375783 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcm:Bcenmc03_4368 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2375067..2375783 Stenotrophomonas maltophilia R551-3 6476378 YP_002028506.1 CDS Smal_2119 NC_011071.1 2375787 2376863 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bur:Bcep18194_C6826 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2375787..2376863 Stenotrophomonas maltophilia R551-3 6476379 YP_002028507.1 CDS Smal_2120 NC_011071.1 2377064 2377990 D KEGG: pfl:PFL_6025 hypothetical protein; hypothetical protein 2377064..2377990 Stenotrophomonas maltophilia R551-3 6476380 YP_002028508.1 CDS Smal_2121 NC_011071.1 2378251 2378865 R KEGG: ppu:PP_2597 hypothetical protein; hypothetical protein complement(2378251..2378865) Stenotrophomonas maltophilia R551-3 6476381 YP_002028509.1 CDS Smal_2122 NC_011071.1 2379036 2379872 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: cgb:cg0054 iron-chelator utilization protein; Siderophore-interacting protein 2379036..2379872 Stenotrophomonas maltophilia R551-3 6476382 YP_002028510.1 CDS Smal_2123 NC_011071.1 2380068 2382245 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2492 TonB-dependent siderophore receptor BauA; TonB-dependent siderophore receptor 2380068..2382245 Stenotrophomonas maltophilia R551-3 6476383 YP_002028511.1 CDS Smal_2124 NC_011071.1 2382298 2382597 D KEGG: dac:Daci_0273 hypothetical protein; hypothetical protein 2382298..2382597 Stenotrophomonas maltophilia R551-3 6476384 YP_002028512.1 CDS Smal_2125 NC_011071.1 2382594 2384204 D PFAM: PepSY-associated TM helix domain protein; KEGG: dac:Daci_0272 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 2382594..2384204 Stenotrophomonas maltophilia R551-3 6476385 YP_002028513.1 CDS Smal_2126 NC_011071.1 2384201 2384479 D KEGG: dac:Daci_0271 hypothetical protein; hypothetical protein 2384201..2384479 Stenotrophomonas maltophilia R551-3 6476386 YP_002028514.1 CDS Smal_2127 NC_011071.1 2384651 2385763 R KEGG: dac:Daci_2290 hypothetical protein; hypothetical protein complement(2384651..2385763) Stenotrophomonas maltophilia R551-3 6476387 YP_002028515.1 CDS Smal_2128 NC_011071.1 2385817 2386431 R KEGG: ppu:PP_2597 hypothetical protein; putative TetR family transcriptional regulator complement(2385817..2386431) Stenotrophomonas maltophilia R551-3 6476388 YP_002028516.1 CDS Smal_2129 NC_011071.1 2386749 2388917 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2492 TonB-dependent siderophore receptor BauA; TonB-dependent siderophore receptor 2386749..2388917 Stenotrophomonas maltophilia R551-3 6476389 YP_002028517.1 CDS Smal_2130 NC_011071.1 2388985 2391669 R PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sen:SACE_4025 membrane translocator; serine/threonine protein kinase complement(2388985..2391669) Stenotrophomonas maltophilia R551-3 6476390 YP_002028518.1 CDS Smal_2131 NC_011071.1 2391838 2391963 R hypothetical protein complement(2391838..2391963) Stenotrophomonas maltophilia R551-3 6476391 YP_002028519.1 CDS Smal_2132 NC_011071.1 2392131 2392775 R PFAM: TraX family protein; KEGG: xom:XOO_2140 TrbP protein; conjugal transfer protein TrbP complement(2392131..2392775) Stenotrophomonas maltophilia R551-3 6476392 YP_002028520.1 CDS Smal_2133 NC_011071.1 2392911 2393858 D KEGG: xac:XAC0909 proline imino-peptidase, chain A; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 2392911..2393858 Stenotrophomonas maltophilia R551-3 6476393 YP_002028521.1 CDS Smal_2134 NC_011071.1 2394164 2394463 D hypothetical protein 2394164..2394463 Stenotrophomonas maltophilia R551-3 6476394 YP_002028522.1 CDS Smal_2135 NC_011071.1 2394757 2395056 D KEGG: aav:Aave_0650 hypothetical protein; hypothetical protein 2394757..2395056 Stenotrophomonas maltophilia R551-3 6476395 YP_002028523.1 CDS Smal_2136 NC_011071.1 2395119 2397878 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 2395119..2397878 Stenotrophomonas maltophilia R551-3 6476396 YP_002028524.1 CDS Smal_2137 NC_011071.1 2397910 2398647 D PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; MgtC/SapB transporter 2397910..2398647 Stenotrophomonas maltophilia R551-3 6476397 YP_002028525.1 CDS Smal_2138 NC_011071.1 2398777 2399832 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbr:BB1101 two component sensor kinase; integral membrane sensor signal transduction histidine kinase 2398777..2399832 Stenotrophomonas maltophilia R551-3 6476398 YP_002028526.1 CDS Smal_2139 NC_011071.1 2399825 2400466 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: azc:AZC_0194 nodulation protein W, DNA-binding response regulator; two component LuxR family transcriptional regulator 2399825..2400466 Stenotrophomonas maltophilia R551-3 6476399 YP_002028527.1 CDS Smal_2140 NC_011071.1 2400463 2401008 D PFAM: protein of unknown function DUF1697; KEGG: bja:bll4334 hypothetical protein; hypothetical protein 2400463..2401008 Stenotrophomonas maltophilia R551-3 6476400 YP_002028528.1 CDS Smal_2141 NC_011071.1 2401120 2402292 R PFAM: low temperature requirement A; KEGG: bid:Bind_1086 low temperature requirement A; low temperature requirement A complement(2401120..2402292) Stenotrophomonas maltophilia R551-3 6476401 YP_002028529.1 CDS Smal_2142 NC_011071.1 2402302 2402568 R KEGG: pap:PSPA7_2235 hypothetical protein; hypothetical protein complement(2402302..2402568) Stenotrophomonas maltophilia R551-3 6476402 YP_002028530.1 CDS Smal_2143 NC_011071.1 2402772 2403296 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA1363 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2402772..2403296 Stenotrophomonas maltophilia R551-3 6476403 YP_002028531.1 CDS Smal_2144 NC_011071.1 2403293 2404144 D PFAM: FecR protein; KEGG: pae:PA1364 probable transmembrane sensor; anti-FecI sigma factor FecR 2403293..2404144 Stenotrophomonas maltophilia R551-3 6476404 YP_002028532.1 CDS Smal_2145 NC_011071.1 2404216 2406645 D PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: hch:HCH_03460 outer membrane receptor protein, mostly Fe transport; TonB-dependent receptor 2404216..2406645 Stenotrophomonas maltophilia R551-3 6476405 YP_002028533.1 CDS Smal_2146 NC_011071.1 2406741 2407613 D PFAM: beta-lactamase domain protein; KEGG: ote:Oter_1111 beta-lactamase; beta-lactamase 2406741..2407613 Stenotrophomonas maltophilia R551-3 6476406 YP_002028534.1 CDS Smal_2147 NC_011071.1 2407787 2408326 R PFAM: protein of unknown function DUF411; KEGG: har:HEAR2924 Conserved hypothetical protein; putative exported protein. putative conserved domains; hypothetical protein complement(2407787..2408326) Stenotrophomonas maltophilia R551-3 6476407 YP_002028535.1 CDS Smal_2148 NC_011071.1 2408804 2411089 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sal:Sala_0186 oxidoreductase alpha (molybdopterin) subunit; oxidoreductase alpha (molybdopterin) subunit complement(2408804..2411089) Stenotrophomonas maltophilia R551-3 6476408 YP_002028536.1 CDS Smal_2149 NC_011071.1 2411333 2412181 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: reh:H16_A0643 uncharacterized protein required for formate dehydrogenase activity; formate dehydrogenase family accessory protein FdhD 2411333..2412181 Stenotrophomonas maltophilia R551-3 6476480 YP_002028537.1 CDS Smal_2150 NC_011071.1 2412220 2412756 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB2474 hypothetical protein; hypothetical protein complement(2412220..2412756) Stenotrophomonas maltophilia R551-3 6476481 YP_002028538.1 CDS Smal_2151 NC_011071.1 2412863 2413744 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB2473 putative AraC-family transcriptional regulator; AraC family transcriptional regulator 2412863..2413744 Stenotrophomonas maltophilia R551-3 6476482 YP_002028539.1 CDS Smal_2152 NC_011071.1 2413862 2414419 R PFAM: regulatory protein TetR; KEGG: sgr:SGR_6919 putative TetR-family transcriptional regulator; TetR family transcriptional regulator complement(2413862..2414419) Stenotrophomonas maltophilia R551-3 6476483 YP_002028540.1 CDS Smal_2153 NC_011071.1 2414424 2415956 R PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_6920 putative permease of the major facilitator superfamily; major facilitator superfamily protein complement(2414424..2415956) Stenotrophomonas maltophilia R551-3 6476484 YP_002028541.1 CDS Smal_2154 NC_011071.1 2416138 2416887 R hypothetical protein complement(2416138..2416887) Stenotrophomonas maltophilia R551-3 6476485 YP_002028542.1 CDS Smal_2155 NC_011071.1 2416887 2417507 R KEGG: ppu:PP_0505 lipoprotein, putative; hypothetical protein complement(2416887..2417507) Stenotrophomonas maltophilia R551-3 6476486 YP_002028543.1 CDS Smal_2156 NC_011071.1 2417497 2418048 R KEGG: maq:Maqu_3430 hypothetical protein; hypothetical protein complement(2417497..2418048) Stenotrophomonas maltophilia R551-3 6476487 YP_002028544.1 CDS Smal_2157 NC_011071.1 2418051 2419304 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein complement(2418051..2419304) Stenotrophomonas maltophilia R551-3 6476488 YP_002028545.1 CDS Smal_2158 NC_011071.1 2419297 2419977 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein complement(2419297..2419977) Stenotrophomonas maltophilia R551-3 6476489 YP_002028546.1 CDS Smal_2159 NC_011071.1 2419989 2420522 R KEGG: hch:HCH_00656 ABC-type metal ion transport system, periplasmic component/surface adhesin; hypothetical protein complement(2419989..2420522) Stenotrophomonas maltophilia R551-3 6476490 YP_002028547.1 CDS Smal_2160 NC_011071.1 2420555 2421031 D KEGG: xfm:Xfasm12_1848 hypothetical protein; hypothetical protein 2420555..2421031 Stenotrophomonas maltophilia R551-3 6476491 YP_002028548.1 CDS Smal_2161 NC_011071.1 2421146 2423335 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5246 TonB-dependent receptor; TonB-dependent receptor complement(2421146..2423335) Stenotrophomonas maltophilia R551-3 6476492 YP_002028549.1 CDS Smal_2162 NC_011071.1 2423467 2424321 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cak:Caul_5108 transcriptional regulator, AraC family; AraC family transcriptional regulator 2423467..2424321 Stenotrophomonas maltophilia R551-3 6476493 YP_002028550.1 CDS Smal_2163 NC_011071.1 2424433 2424810 D PFAM: copper resistance protein CopC; KEGG: reh:H16_B2183 copper resistance protein C; copper resistance protein CopC 2424433..2424810 Stenotrophomonas maltophilia R551-3 6476494 YP_002028551.1 CDS Smal_2164 NC_011071.1 2424821 2425705 D PFAM: copper resistance D domain protein; KEGG: reu:Reut_A2486 copper resistance D; copper resistance D domain-containing protein 2424821..2425705 Stenotrophomonas maltophilia R551-3 6476495 YP_002028552.1 CDS Smal_2165 NC_011071.1 2425751 2426449 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSp0655 probable two component response regulator transcription regulator protein; two component heavy metal response transcriptional regulator, winged helix family 2425751..2426449 Stenotrophomonas maltophilia R551-3 6476496 YP_002028553.1 CDS Smal_2166 NC_011071.1 2426446 2427813 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: reu:Reut_A2491 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 2426446..2427813 Stenotrophomonas maltophilia R551-3 6476497 YP_002028554.1 CDS Smal_2167 NC_011071.1 2427879 2428772 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI2671 putative transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2427879..2428772) Stenotrophomonas maltophilia R551-3 6476498 YP_002028555.1 CDS Smal_2168 NC_011071.1 2428879 2429622 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC0083 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2428879..2429622 Stenotrophomonas maltophilia R551-3 6476499 YP_002028556.1 CDS Smal_2169 NC_011071.1 2429767 2432844 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cti:RALTA_B0380 putative cation efflux system transmembrane protein; CzcA family heavy metal efflux pump complement(2429767..2432844) Stenotrophomonas maltophilia R551-3 6476500 YP_002028557.1 CDS Smal_2170 NC_011071.1 2432841 2434013 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rme:Rmet_3837 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2432841..2434013) Stenotrophomonas maltophilia R551-3 6476501 YP_002028558.1 CDS Smal_2171 NC_011071.1 2434010 2435257 R PFAM: outer membrane efflux protein; KEGG: dar:Daro_1877 outer membrane efflux protein; outer membrane efflux protein complement(2434010..2435257) Stenotrophomonas maltophilia R551-3 6476502 YP_002028559.1 CDS Smal_2172 NC_011071.1 2435320 2435994 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo0975 probable two-component response regulatory protein; winged helix family two component transcriptional regulator 2435320..2435994 Stenotrophomonas maltophilia R551-3 6476503 YP_002028560.1 CDS Smal_2173 NC_011071.1 2435987 2437360 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: mca:MCA1765 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2435987..2437360 Stenotrophomonas maltophilia R551-3 6476504 YP_002028561.1 CDS Smal_2174 NC_011071.1 2437492 2439846 R TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xac:XAC1179 hypothetical protein; alpha-1,2-mannosidase complement(2437492..2439846) Stenotrophomonas maltophilia R551-3 6476505 YP_002028562.1 CDS Smal_2175 NC_011071.1 2439943 2440266 R PFAM: Thioredoxin domain; KEGG: xcb:XC_0083 thioredoxin; Thioredoxin domain complement(2439943..2440266) Stenotrophomonas maltophilia R551-3 6476506 YP_002028563.1 CDS Smal_2176 NC_011071.1 2440272 2440688 R KEGG: xcv:XCV0079 hypothetical protein; hypothetical protein complement(2440272..2440688) Stenotrophomonas maltophilia R551-3 6476507 YP_002028564.1 CDS Smal_2177 NC_011071.1 2440924 2441082 R hypothetical protein complement(2440924..2441082) Stenotrophomonas maltophilia R551-3 6476508 YP_002028565.1 CDS Smal_2178 NC_011071.1 2441552 2443039 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: xcb:XC_0084 proline/betaine transporter; general substrate transporter 2441552..2443039 Stenotrophomonas maltophilia R551-3 6476509 YP_002028566.1 CDS Smal_2179 NC_011071.1 2443059 2443700 R hypothetical protein complement(2443059..2443700) Stenotrophomonas maltophilia R551-3 6476510 YP_002028567.1 CDS Smal_2180 NC_011071.1 2443810 2444436 R KEGG: xcv:XCV1821 hypothetical protein; hypothetical protein complement(2443810..2444436) Stenotrophomonas maltophilia R551-3 6476511 YP_002028568.1 CDS Smal_2181 NC_011071.1 2444440 2444781 R KEGG: xom:XOO_2241 hypothetical protein; hypothetical protein complement(2444440..2444781) Stenotrophomonas maltophilia R551-3 6476512 YP_002028569.1 CDS Smal_2182 NC_011071.1 2444852 2446438 R KEGG: mrd:Mrad2831_4235 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase complement(2444852..2446438) Stenotrophomonas maltophilia R551-3 6476513 YP_002028570.1 CDS Smal_2183 NC_011071.1 2446448 2446852 R PFAM: response regulator receiver; KEGG: xau:Xaut_2532 response regulator receiver protein; response regulator receiver protein complement(2446448..2446852) Stenotrophomonas maltophilia R551-3 6476514 YP_002028571.1 CDS Smal_2184 NC_011071.1 2446965 2448419 R KEGG: ppg:PputGB1_1525 conserved hypothetical protein; putative peptide signal; hypothetical protein complement(2446965..2448419) Stenotrophomonas maltophilia R551-3 6476515 YP_002028572.1 CDS Smal_2185 NC_011071.1 2448511 2449275 R KEGG: mmw:Mmwyl1_4302 hypothetical protein; hypothetical protein complement(2448511..2449275) Stenotrophomonas maltophilia R551-3 6476516 YP_002028573.1 CDS Smal_2186 NC_011071.1 2449330 2452452 R PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_4301 TonB-dependent receptor; TonB-dependent receptor complement(2449330..2452452) Stenotrophomonas maltophilia R551-3 6476517 YP_002028574.1 CDS Smal_2187 NC_011071.1 2452635 2453591 R PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein; anti-FecI sigma factor FecR complement(2452635..2453591) Stenotrophomonas maltophilia R551-3 6476518 YP_002028575.1 CDS Smal_2188 NC_011071.1 2453674 2454177 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: xau:Xaut_2777 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(2453674..2454177) Stenotrophomonas maltophilia R551-3 6476519 YP_002028576.1 CDS Smal_2189 NC_011071.1 2454318 2455244 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_3305 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2454318..2455244) Stenotrophomonas maltophilia R551-3 6476520 YP_002028577.1 CDS Smal_2190 NC_011071.1 2455396 2456262 D PFAM: Pirin domain protein; KEGG: bch:Bcen2424_1152 pirin domain protein domain protein; Pirin domain-containing protein 2455396..2456262 Stenotrophomonas maltophilia R551-3 6476521 YP_002028578.1 CDS Smal_2191 NC_011071.1 2456334 2457014 D PFAM: isochorismatase hydrolase; KEGG: oan:Oant_3983 isochorismatase hydrolase; isochorismatase hydrolase 2456334..2457014 Stenotrophomonas maltophilia R551-3 6476522 YP_002028579.1 CDS Smal_2192 NC_011071.1 2457069 2457710 D PFAM: isochorismatase hydrolase; KEGG: rso:RS01788 hypothetical protein; isochorismatase hydrolase 2457069..2457710 Stenotrophomonas maltophilia R551-3 6476523 YP_002028580.1 CDS Smal_2193 NC_011071.1 2457796 2458185 D PFAM: OsmC family protein; KEGG: bam:Bamb_5525 OsmC family protein; OsmC family protein 2457796..2458185 Stenotrophomonas maltophilia R551-3 6476524 YP_002028581.1 CDS Smal_2194 NC_011071.1 2458312 2459706 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2138 ABC transporter with duplicated ATPase domain; ABC transporter-like protein 2458312..2459706 Stenotrophomonas maltophilia R551-3 6476525 YP_002028582.1 CDS Smal_2195 NC_011071.1 2459838 2460167 R hypothetical protein complement(2459838..2460167) Stenotrophomonas maltophilia R551-3 6476526 YP_002028583.1 CDS Smal_2196 NC_011071.1 2460265 2462010 R KEGG: mms:mma_2376 hypothetical protein; hypothetical protein complement(2460265..2462010) Stenotrophomonas maltophilia R551-3 6476527 YP_002028584.1 CDS Smal_2197 NC_011071.1 2462053 2462754 R KEGG: mms:mma_2377 hypothetical protein; hypothetical protein complement(2462053..2462754) Stenotrophomonas maltophilia R551-3 6476528 YP_002028585.1 CDS Smal_2198 NC_011071.1 2462758 2463171 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_2378 ExbD transport protein; biopolymer transport protein ExbD/TolR complement(2462758..2463171) Stenotrophomonas maltophilia R551-3 6476529 YP_002028586.1 CDS Smal_2199 NC_011071.1 2463182 2464966 R PFAM: MotA/TolQ/ExbB proton channel; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mms:mma_2379 ExbB transport protein; MotA/TolQ/ExbB proton channel complement(2463182..2464966) Stenotrophomonas maltophilia R551-3 6476530 YP_002028587.1 CDS Smal_2200 NC_011071.1 2465005 2466630 R PFAM: surface antigen (D15); Polypeptide-transport-associated domain protein ShlB-type; KEGG: mms:mma_2380 hemolysin activation/secretion protein; Polypeptide-transport-associated domain-containing protein ShlB-type complement(2465005..2466630) Stenotrophomonas maltophilia R551-3 6476531 YP_002028588.1 CDS Smal_2201 NC_011071.1 2466823 2467158 D KEGG: reh:H16_A1275 hypothetical protein; hypothetical protein 2466823..2467158 Stenotrophomonas maltophilia R551-3 6476532 YP_002028589.1 CDS Smal_2202 NC_011071.1 2467250 2467714 R KEGG: pap:PSPA7_4831 hypothetical protein; hypothetical protein complement(2467250..2467714) Stenotrophomonas maltophilia R551-3 6476533 YP_002028590.1 CDS Smal_2203 NC_011071.1 2467818 2468264 D TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN2111 type II secretion system protein G; general secretion pathway protein H 2467818..2468264 Stenotrophomonas maltophilia R551-3 6476534 YP_002028591.1 CDS Smal_2204 NC_011071.1 2468273 2468623 D TIGRFAM: general secretion pathway protein I; KEGG: pap:PSPA7_4830 general secretion pathway protein I; general secretion pathway protein I 2468273..2468623 Stenotrophomonas maltophilia R551-3 6476535 YP_002028592.1 CDS Smal_2205 NC_011071.1 2468620 2469234 D KEGG: pen:PSEEN2110 type II secretion system protein J; type II secretion system protein J 2468620..2469234 Stenotrophomonas maltophilia R551-3 6476536 YP_002028593.1 CDS Smal_2206 NC_011071.1 2469696 2482094 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mms:mma_2368 uncharacterized giant conserved protein; filamentous hemagglutinin family outer membrane protein complement(2469696..2482094) Stenotrophomonas maltophilia R551-3 6476537 YP_002028594.1 CDS Smal_2207 NC_011071.1 2482301 2483488 R KEGG: pae:PA0688 probable binding protein component of ABC transporter; alkaline phosphatase complement(2482301..2483488) Stenotrophomonas maltophilia R551-3 6476538 YP_002028595.1 CDS Smal_2208 NC_011071.1 2483587 2484780 R KEGG: pae:PA0688 probable binding protein component of ABC transporter; alkaline phosphatase complement(2483587..2484780) Stenotrophomonas maltophilia R551-3 6476539 YP_002028596.1 CDS Smal_2209 NC_011071.1 2484998 2486197 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pae:PA0687 probable type II secretion system protein; general secretion pathway protein F complement(2484998..2486197) Stenotrophomonas maltophilia R551-3 6476540 YP_002028597.1 CDS Smal_2210 NC_011071.1 2486205 2487638 R KEGG: pae:PA0686 probable type II secretion system protein; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(2486205..2487638) Stenotrophomonas maltophilia R551-3 6476541 YP_002028598.1 CDS Smal_2211 NC_011071.1 2487635 2490016 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN2332 type II secretion system protein XcpQ-2; signal peptide; general secretion pathway protein D complement(2487635..2490016) Stenotrophomonas maltophilia R551-3 6476542 YP_002028599.1 CDS Smal_2212 NC_011071.1 2490013 2490540 R KEGG: pau:PA14_55460 probable type II secretion system protein; putative type II secretion system protein complement(2490013..2490540) Stenotrophomonas maltophilia R551-3 6476543 YP_002028600.1 CDS Smal_2213 NC_011071.1 2490537 2491700 R PFAM: General secretion pathway L; KEGG: pfo:PflO1_3177 probable type II secretion system protein; general secretion pathway protein L complement(2490537..2491700) Stenotrophomonas maltophilia R551-3 6476544 YP_002028601.1 CDS Smal_2214 NC_011071.1 2491697 2492602 R PFAM: General secretion pathway protein K; KEGG: pfl:PFL_2753 general secretion pathway protein K; General secretion pathway protein K complement(2491697..2492602) Stenotrophomonas maltophilia R551-3 6476545 YP_002028602.1 CDS Smal_2215 NC_011071.1 2492612 2493049 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bpt:Bpet2856 general secretion pathway protein G; general secretion pathway protein G complement(2492612..2493049) Stenotrophomonas maltophilia R551-3 6476546 YP_002028603.1 CDS Smal_2216 NC_011071.1 2493107 2493691 R KEGG: pfl:PFL_2819 prevent-host-death family protein; hypothetical protein complement(2493107..2493691) Stenotrophomonas maltophilia R551-3 6476547 YP_002028604.1 CDS Smal_2217 NC_011071.1 2493812 2494363 R KEGG: pap:PSPA7_4820 hypothetical protein; hypothetical protein complement(2493812..2494363) Stenotrophomonas maltophilia R551-3 6476548 YP_002028605.1 CDS Smal_2218 NC_011071.1 2494422 2495402 R KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component; Fe2+-dicitrate sensor, membrane protein complement(2494422..2495402) Stenotrophomonas maltophilia R551-3 6476549 YP_002028606.1 CDS Smal_2219 NC_011071.1 2495472 2496002 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(2495472..2496002) Stenotrophomonas maltophilia R551-3 6476550 YP_002028607.1 CDS Smal_2220 NC_011071.1 2496019 2496699 R PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein; Secretin/TonB short domain complement(2496019..2496699) Stenotrophomonas maltophilia R551-3 6476551 YP_002028608.1 CDS Smal_2221 NC_011071.1 2497170 2497634 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_I0319 AsnC family regulatory protein; AsnC family transcriptional regulator complement(2497170..2497634) Stenotrophomonas maltophilia R551-3 6476552 YP_002028609.1 CDS Smal_2222 NC_011071.1 2497762 2498493 D PFAM: AzlC family protein; KEGG: bpd:BURPS668_0362 AzlC family protein; AzlC family protein 2497762..2498493 Stenotrophomonas maltophilia R551-3 6476553 YP_002028610.1 CDS Smal_2223 NC_011071.1 2498490 2498804 D PFAM: branched-chain amino acid transport; KEGG: oan:Oant_3947 branched-chain amino acid transport; branched-chain amino acid transport 2498490..2498804 Stenotrophomonas maltophilia R551-3 6476554 YP_002028611.1 CDS Smal_2224 NC_011071.1 2499012 2499440 D KEGG: wsu:WS1556 diguanylate cyclase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 2499012..2499440 Stenotrophomonas maltophilia R551-3 6476555 YP_002028612.1 CDS Smal_2225 NC_011071.1 2499437 2500966 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: acr:Acry_2801 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 2499437..2500966 Stenotrophomonas maltophilia R551-3 6476556 YP_002028613.1 CDS Smal_2226 NC_011071.1 2501328 2501996 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B2850 ABC molybdate transporter, ATPase subunit; ABC transporter-like protein complement(2501328..2501996) Stenotrophomonas maltophilia R551-3 6476557 YP_002028614.1 CDS Smal_2227 NC_011071.1 2501986 2502669 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA2579 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit complement(2501986..2502669) Stenotrophomonas maltophilia R551-3 6476558 YP_002028615.1 CDS Smal_2228 NC_011071.1 2502673 2503416 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: reh:H16_A0677 ABC-type transporter, periplasmic component: MolT family; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2502673..2503416) Stenotrophomonas maltophilia R551-3 6476559 YP_002028616.1 CDS Smal_2229 NC_011071.1 2503436 2504212 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aeh:Mlg_0319 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(2503436..2504212) Stenotrophomonas maltophilia R551-3 6476560 YP_002028617.1 CDS Smal_2230 NC_011071.1 2504224 2505447 R PFAM: HemN domain protein; KEGG: xcb:XC_2090 coproporphyrinogen III oxidase; HemN domain-containing protein complement(2504224..2505447) Stenotrophomonas maltophilia R551-3 6476561 YP_002028618.1 CDS Smal_2231 NC_011071.1 2505561 2506892 R PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_3862 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(2505561..2506892) Stenotrophomonas maltophilia R551-3 6476644 YP_002028619.1 CDS Smal_2232 NC_011071.1 2506916 2507815 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: csa:Csal_1334 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2506916..2507815) Stenotrophomonas maltophilia R551-3 6476645 YP_002028620.1 CDS Smal_2233 NC_011071.1 2507819 2508526 R KEGG: abo:ABO_0543 respiratory nitrate reductase 1 gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma complement(2507819..2508526) Stenotrophomonas maltophilia R551-3 6476646 YP_002028621.1 CDS Smal_2234 NC_011071.1 2508523 2509203 R TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone complement(2508523..2509203) Stenotrophomonas maltophilia R551-3 6476647 YP_002028622.1 CDS Smal_2235 NC_011071.1 2509203 2510747 R TIGRFAM: nitrate reductase, beta subunit; KEGG: hch:HCH_04010 nitrate reductase, beta subunit; nitrate reductase subunit beta complement(2509203..2510747) Stenotrophomonas maltophilia R551-3 6476648 YP_002028623.1 CDS Smal_2236 NC_011071.1 2510747 2514490 R TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: maq:Maqu_3086 nitrate reductase, alpha subunit; nitrate reductase subunit alpha complement(2510747..2514490) Stenotrophomonas maltophilia R551-3 6476649 YP_002028624.1 CDS Smal_2237 NC_011071.1 2514563 2515981 R TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_1233 nitrite extrusion protein 2; nitrite transporter complement(2514563..2515981) Stenotrophomonas maltophilia R551-3 6476650 YP_002028625.1 CDS Smal_2238 NC_011071.1 2516127 2516492 R KEGG: xom:XOO_2950 hypothetical protein; hypothetical protein complement(2516127..2516492) Stenotrophomonas maltophilia R551-3 6476651 YP_002028626.1 CDS Smal_2239 NC_011071.1 2516489 2517037 R KEGG: xcb:XC_2183 molybdopterin guanine dinucleotide synthase; molybdopterin guanine dinucleotide synthase complement(2516489..2517037) Stenotrophomonas maltophilia R551-3 6476652 YP_002028627.1 CDS Smal_2240 NC_011071.1 2517074 2517574 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: syf:Synpcc7942_1283 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein complement(2517074..2517574) Stenotrophomonas maltophilia R551-3 6476653 YP_002028628.1 CDS Smal_2241 NC_011071.1 2517578 2517838 R PFAM: thiamineS protein; KEGG: ade:Adeh_1120 molybdopterin synthase subunit MoaE / molybdopterin synthase subunit MoaD; sulfur transfer protein ThiS complement(2517578..2517838) Stenotrophomonas maltophilia R551-3 6476654 YP_002028629.1 CDS Smal_2242 NC_011071.1 2517838 2519091 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: xcv:XCV2083 molybdopterin biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein complement(2517838..2519091) Stenotrophomonas maltophilia R551-3 6476655 YP_002028630.1 CDS moaC NC_011071.1 2519091 2520086 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA complement(2519091..2520086) Stenotrophomonas maltophilia R551-3 6476656 YP_002028631.1 CDS Smal_2244 NC_011071.1 2520095 2521075 R KEGG: asa:ASA_2774 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(2520095..2521075) Stenotrophomonas maltophilia R551-3 6476657 YP_002028632.1 CDS Smal_2245 NC_011071.1 2521270 2521674 D KEGG: psa:PST_3997 ribonucleotide reductase, alpha subunit; ribonucleotide reductase subunit alpha 2521270..2521674 Stenotrophomonas maltophilia R551-3 6476658 YP_002028633.1 CDS Smal_2246 NC_011071.1 2521668 2521997 R KEGG: nar:Saro_1049 RhaT L-rhamnose-proton symport 2; hypothetical protein complement(2521668..2521997) Stenotrophomonas maltophilia R551-3 6476659 YP_002028634.1 CDS Smal_2247 NC_011071.1 2522567 2522941 D hypothetical protein 2522567..2522941 Stenotrophomonas maltophilia R551-3 6476660 YP_002028635.1 CDS Smal_2248 NC_011071.1 2522987 2523322 R KEGG: art:Arth_0991 hypothetical protein; hypothetical protein complement(2522987..2523322) Stenotrophomonas maltophilia R551-3 6476661 YP_002028636.1 CDS Smal_2250 NC_011071.1 2523842 2524183 R hypothetical protein complement(2523842..2524183) Stenotrophomonas maltophilia R551-3 6476663 YP_002028637.1 CDS Smal_2251 NC_011071.1 2524422 2529155 R TIGRFAM: YD repeat protein; KEGG: xcb:XC_0136 RhsD protein; YD repeat-containing protein complement(2524422..2529155) Stenotrophomonas maltophilia R551-3 6476664 YP_002028638.1 CDS Smal_2252 NC_011071.1 2529597 2530391 R PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bch:Bcen2424_3244 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2529597..2530391) Stenotrophomonas maltophilia R551-3 6476665 YP_002028639.1 CDS Smal_2253 NC_011071.1 2530471 2532432 D PFAM: Fusaric acid resistance protein conserved region; KEGG: rpc:RPC_1992 fusaric acid resistance protein conserved region; fusaric acid resistance protein 2530471..2532432 Stenotrophomonas maltophilia R551-3 6476666 YP_002028640.1 CDS Smal_2254 NC_011071.1 2532437 2532646 D PFAM: protein of unknown function DUF1656; KEGG: rpa:RPA2708a hypothetical membrane protein; hypothetical protein 2532437..2532646 Stenotrophomonas maltophilia R551-3 6476667 YP_002028641.1 CDS Smal_2255 NC_011071.1 2532648 2533532 D PFAM: secretion protein HlyD family protein; KEGG: rpc:RPC_1991 secretion protein HlyD; secretion protein HlyD family protein 2532648..2533532 Stenotrophomonas maltophilia R551-3 6476668 YP_002028642.1 CDS Smal_2256 NC_011071.1 2533529 2534965 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bbr:BB3084 probable outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2533529..2534965 Stenotrophomonas maltophilia R551-3 6476669 YP_002028643.1 CDS Smal_2257 NC_011071.1 2535100 2535447 D KEGG: bte:BTH_I0992 hypothetical protein; hypothetical protein 2535100..2535447 Stenotrophomonas maltophilia R551-3 6476670 YP_002028644.1 CDS Smal_2258 NC_011071.1 2535557 2536099 D hypothetical protein 2535557..2536099 Stenotrophomonas maltophilia R551-3 6476671 YP_002028645.1 CDS Smal_2259 NC_011071.1 2536096 2536239 D hypothetical protein 2536096..2536239 Stenotrophomonas maltophilia R551-3 6476672 YP_002028646.1 CDS Smal_2260 NC_011071.1 2536324 2536851 D KEGG: fjo:Fjoh_0994 hypothetical protein; hypothetical protein 2536324..2536851 Stenotrophomonas maltophilia R551-3 6476673 YP_002028647.1 CDS Smal_2261 NC_011071.1 2536901 2537527 D hypothetical protein 2536901..2537527 Stenotrophomonas maltophilia R551-3 6476674 YP_002028648.1 CDS Smal_2262 NC_011071.1 2537610 2538002 D PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase 2537610..2538002 Stenotrophomonas maltophilia R551-3 6476675 YP_002028649.1 CDS Smal_2263 NC_011071.1 2538052 2538972 R KEGG: mxa:MXAN_5214 hypothetical protein; hypothetical protein complement(2538052..2538972) Stenotrophomonas maltophilia R551-3 6476676 YP_002028650.1 CDS Smal_2264 NC_011071.1 2539118 2539771 D KEGG: xcv:XCV3871 hypothetical protein; hypothetical protein 2539118..2539771 Stenotrophomonas maltophilia R551-3 6476677 YP_002028651.1 CDS Smal_2265 NC_011071.1 2539782 2542046 D PFAM: protein of unknown function DUF802; KEGG: bte:BTH_II1149 domain of unknown function (DUF802) family; hypothetical protein 2539782..2542046 Stenotrophomonas maltophilia R551-3 6476678 YP_002028652.1 CDS Smal_2266 NC_011071.1 2542043 2542681 D PFAM: OmpA/MotB domain protein; KEGG: xcb:XC_3783 hypothetical protein; hypothetical protein 2542043..2542681 Stenotrophomonas maltophilia R551-3 6476679 YP_002028653.1 CDS Smal_2267 NC_011071.1 2542671 2543048 D KEGG: xcb:XC_3784 hypothetical protein; hypothetical protein 2542671..2543048 Stenotrophomonas maltophilia R551-3 6476680 YP_002028654.1 CDS Smal_2268 NC_011071.1 2543439 2544404 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2543439..2544404 Stenotrophomonas maltophilia R551-3 6476681 YP_002028655.1 CDS Smal_2269 NC_011071.1 2544603 2546921 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_4325 TonB-dependent receptor; TonB-dependent receptor 2544603..2546921 Stenotrophomonas maltophilia R551-3 6476682 YP_002028656.1 CDS Smal_2270 NC_011071.1 2546943 2548403 D KEGG: swi:Swit_1485 hypothetical protein; hypothetical protein 2546943..2548403 Stenotrophomonas maltophilia R551-3 6476683 YP_002028657.1 CDS Smal_2271 NC_011071.1 2548523 2549281 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: pde:Pden_2384 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2548523..2549281) Stenotrophomonas maltophilia R551-3 6476684 YP_002028658.1 CDS entF NC_011071.1 2549272 2553162 R with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F complement(2549272..2553162) Stenotrophomonas maltophilia R551-3 6476685 YP_002028659.1 CDS Smal_2273 NC_011071.1 2553159 2553416 R PFAM: phosphopantetheine-binding; KEGG: scl:sce3881 isochorismatase; phosphopantetheine-binding protein complement(2553159..2553416) Stenotrophomonas maltophilia R551-3 6476686 YP_002028660.1 CDS Smal_2274 NC_011071.1 2553413 2554048 R PFAM: isochorismatase hydrolase; KEGG: pde:Pden_2383 isochorismatase; isochorismatase complement(2553413..2554048) Stenotrophomonas maltophilia R551-3 6476687 YP_002028661.1 CDS Smal_2275 NC_011071.1 2554048 2555700 R PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_3645 2,3-dihydroxybenzoate-AMP ligase; AMP-dependent synthetase and ligase complement(2554048..2555700) Stenotrophomonas maltophilia R551-3 6476688 YP_002028662.1 CDS Smal_2276 NC_011071.1 2555697 2556890 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: pde:Pden_2382 isochorismate synthases; isochorismate synthase complement(2555697..2556890) Stenotrophomonas maltophilia R551-3 6476689 YP_002028663.1 CDS Smal_2277 NC_011071.1 2556887 2558083 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_3503 transporter, putative; major facilitator superfamily protein complement(2556887..2558083) Stenotrophomonas maltophilia R551-3 6476690 YP_002028664.1 CDS Smal_2278 NC_011071.1 2558238 2558567 R KEGG: xcb:XC_0609 inner membrane protein; inner membrane protein complement(2558238..2558567) Stenotrophomonas maltophilia R551-3 6476691 YP_002028665.1 CDS Smal_2279 NC_011071.1 2558703 2559638 R PFAM: Luciferase-like monooxygenase; KEGG: cef:CE2119 hypothetical protein; luciferase-like monooxygenase complement(2558703..2559638) Stenotrophomonas maltophilia R551-3 6476692 YP_002028666.1 CDS Smal_2280 NC_011071.1 2559705 2560154 D PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_2146 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2559705..2560154 Stenotrophomonas maltophilia R551-3 6476693 YP_002028667.1 CDS Smal_2281 NC_011071.1 2560274 2561788 D PFAM: Thioredoxin domain; KEGG: xcv:XCV3996 putative disulphide-isomerase precursor; Thioredoxin domain 2560274..2561788 Stenotrophomonas maltophilia R551-3 6476694 YP_002028668.1 CDS Smal_2282 NC_011071.1 2562073 2562702 D PFAM: manganese and iron superoxide dismutase; KEGG: dac:Daci_2970 superoxide dismutase; Superoxide dismutase 2562073..2562702 Stenotrophomonas maltophilia R551-3 6476695 YP_002028669.1 CDS Smal_2283 NC_011071.1 2562699 2563274 D PFAM: flavin reductase domain protein FMN-binding; KEGG: rso:RSc1836 hypothetical protein; flavin reductase domain-containing protein 2562699..2563274 Stenotrophomonas maltophilia R551-3 6476696 YP_002028670.1 CDS Smal_2284 NC_011071.1 2563271 2563609 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: psa:PST_0013 hypothetical protein; hypothetical protein 2563271..2563609 Stenotrophomonas maltophilia R551-3 6476697 YP_002028671.1 CDS Smal_2285 NC_011071.1 2563615 2564763 R PFAM: fatty acid desaturase; KEGG: xac:XAC3959 hypothetical protein; fatty acid desaturase complement(2563615..2564763) Stenotrophomonas maltophilia R551-3 6476698 YP_002028672.1 CDS Smal_2286 NC_011071.1 2564776 2565885 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xom:XOO_4187 oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(2564776..2565885) Stenotrophomonas maltophilia R551-3 6476699 YP_002028673.1 CDS Smal_2287 NC_011071.1 2565939 2566595 D PFAM: regulatory protein TetR; KEGG: xcb:XC_3966 transcriptional regulator TetR family; TetR family transcriptional regulator 2565939..2566595 Stenotrophomonas maltophilia R551-3 6476700 YP_002028674.1 CDS Smal_2288 NC_011071.1 2566958 2569378 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: ent:Ent638_4206 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 2566958..2569378 Stenotrophomonas maltophilia R551-3 6476701 YP_002028675.1 CDS Smal_2289 NC_011071.1 2569638 2571797 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0504 TonB-dependent outer membrane receptor; TonB-dependent receptor plug 2569638..2571797 Stenotrophomonas maltophilia R551-3 6476702 YP_002028676.1 CDS Smal_2290 NC_011071.1 2571787 2572347 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: spu:759710 similar to nucleoredoxin; alkyl hydroperoxide reductase 2571787..2572347 Stenotrophomonas maltophilia R551-3 6476703 YP_002028677.1 CDS Smal_2291 NC_011071.1 2572416 2572886 R Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR complement(2572416..2572886) Stenotrophomonas maltophilia R551-3 6476704 YP_002028678.1 CDS Smal_2292 NC_011071.1 2573004 2574335 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: xcv:XCV2197 manganese transport protein MntH; NRAMP family Mn2+/Fe2+ transporter 2573004..2574335 Stenotrophomonas maltophilia R551-3 6476705 YP_002028679.1 CDS Smal_2293 NC_011071.1 2574477 2574803 R PFAM: Thioredoxin domain; KEGG: xac:XAC4072 thioredoxin; Thioredoxin domain complement(2574477..2574803) Stenotrophomonas maltophilia R551-3 6476706 YP_002028680.1 CDS Smal_2294 NC_011071.1 2574775 2575239 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(2574775..2575239) Stenotrophomonas maltophilia R551-3 6476707 YP_002028681.1 CDS nrdF NC_011071.1 2575268 2576308 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(2575268..2576308) Stenotrophomonas maltophilia R551-3 6476708 YP_002028682.1 CDS Smal_2296 NC_011071.1 2576417 2578780 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2576417..2578780) Stenotrophomonas maltophilia R551-3 6476709 YP_002028683.1 CDS Smal_2297 NC_011071.1 2579211 2580188 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pcr:Pcryo_0019 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase zinc-binding domain-containing protein 2579211..2580188 Stenotrophomonas maltophilia R551-3 6476710 YP_002028684.1 CDS Smal_2298 NC_011071.1 2580415 2583039 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL2488 outer membrane protein; TonB-dependent receptor 2580415..2583039 Stenotrophomonas maltophilia R551-3 6476711 YP_002028685.1 CDS Smal_2299 NC_011071.1 2583132 2585111 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: xcc:XCC3402 high-affinity choline transport; choline/carnitine/betaine transporter complement(2583132..2585111) Stenotrophomonas maltophilia R551-3 6476712 YP_002028686.1 CDS Smal_2300 NC_011071.1 2585307 2585687 R KEGG: hne:HNE_0558 glyoxalase family protein; glyoxalase family protein complement(2585307..2585687) Stenotrophomonas maltophilia R551-3 6476783 YP_002028687.1 CDS Smal_2301 NC_011071.1 2585827 2586351 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2585827..2586351 Stenotrophomonas maltophilia R551-3 6476784 YP_002028688.1 CDS Smal_2302 NC_011071.1 2586348 2587292 D PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 2586348..2587292 Stenotrophomonas maltophilia R551-3 6476785 YP_002028689.1 CDS Smal_2303 NC_011071.1 2587362 2590310 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2365 HasR; TonB-dependent receptor 2587362..2590310 Stenotrophomonas maltophilia R551-3 6476786 YP_002028690.1 CDS Smal_2304 NC_011071.1 2590453 2590776 R PFAM: small multidrug resistance protein; KEGG: cvi:CV_1278 probable multidrug transmembrane resistance signal peptide protein; small multidrug resistance protein complement(2590453..2590776) Stenotrophomonas maltophilia R551-3 6476787 YP_002028691.1 CDS Smal_2305 NC_011071.1 2590776 2591129 R PFAM: small multidrug resistance protein; KEGG: cvi:CV_1279 probable multidrug transmembrane resistance signal peptide protein; small multidrug resistance protein complement(2590776..2591129) Stenotrophomonas maltophilia R551-3 6476788 YP_002028692.1 CDS Smal_2306 NC_011071.1 2591290 2592141 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1223 putative LysR-family transcriptional regulatory protein; LysR family transcriptional regulator 2591290..2592141 Stenotrophomonas maltophilia R551-3 6476789 YP_002028693.1 CDS Smal_2307 NC_011071.1 2592243 2593163 R KEGG: xcv:XCV2100 hypothetical protein; hypothetical protein complement(2592243..2593163) Stenotrophomonas maltophilia R551-3 6476790 YP_002028694.1 CDS Smal_2308 NC_011071.1 2593295 2595376 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: reu:Reut_B4646 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2593295..2595376 Stenotrophomonas maltophilia R551-3 6476791 YP_002028695.1 CDS Smal_2309 NC_011071.1 2595439 2597211 D PFAM: CBS domain containing protein; Chloride channel core; KEGG: xcv:XCV3892 voltage gated chloride channel family protein; chloride channel core protein 2595439..2597211 Stenotrophomonas maltophilia R551-3 6476792 YP_002028696.1 CDS Smal_2310 NC_011071.1 2597314 2598030 D PFAM: MgtC/SapB transporter; KEGG: bja:bll7766 hypothetical protein; MgtC/SapB transporter 2597314..2598030 Stenotrophomonas maltophilia R551-3 6476793 YP_002028697.1 CDS Smal_2311 NC_011071.1 2598046 2598453 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pap:PSPA7_5849 probable transcriptional regulator; MerR family transcriptional regulator complement(2598046..2598453) Stenotrophomonas maltophilia R551-3 6476794 YP_002028698.1 CDS Smal_2312 NC_011071.1 2598517 2599344 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cti:RALTA_A0018 conserved hypothetical protein; putative methyltransferase; type 11 methyltransferase 2598517..2599344 Stenotrophomonas maltophilia R551-3 6476795 YP_002028699.1 CDS Smal_2313 NC_011071.1 2599427 2599729 R hypothetical protein complement(2599427..2599729) Stenotrophomonas maltophilia R551-3 6476796 YP_002028700.1 CDS Smal_2314 NC_011071.1 2599839 2600675 R PFAM: OmpA/MotB domain protein; SmpA/OmlA domain protein; KEGG: bte:BTH_II1488 outer membrane lipoprotein, OmpA/SmpA/OmlA family; OmpA/MotB domain-containing protein complement(2599839..2600675) Stenotrophomonas maltophilia R551-3 6476797 YP_002028701.1 CDS Smal_2315 NC_011071.1 2600737 2605878 R PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: ecc:c4424 putative adhesin; YadA domain-containing protein complement(2600737..2605878) Stenotrophomonas maltophilia R551-3 6476798 YP_002028702.1 CDS Smal_2316 NC_011071.1 2606114 2607124 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bxe:Bxe_A4440 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2606114..2607124) Stenotrophomonas maltophilia R551-3 6476799 YP_002028703.1 CDS Smal_2317 NC_011071.1 2607787 2607978 D PFAM: Flp/Fap pilin component; KEGG: bmu:Bmul_1736 Flp/Fap pilin component; Flp/Fap pilin component 2607787..2607978 Stenotrophomonas maltophilia R551-3 6476800 YP_002028704.1 CDS Smal_2318 NC_011071.1 2608045 2608590 D PFAM: peptidase A24A prepilin type IV; KEGG: rso:RSp1091 probable prepilin peptidase transmembrane protein; peptidase A24A prepilin type IV 2608045..2608590 Stenotrophomonas maltophilia R551-3 6476801 YP_002028705.1 CDS Smal_2319 NC_011071.1 2608587 2609063 D PFAM: TadE family protein; KEGG: bte:BTH_I2544 hypothetical protein; TadE family protein 2608587..2609063 Stenotrophomonas maltophilia R551-3 6476802 YP_002028706.1 CDS Smal_2320 NC_011071.1 2609087 2610124 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: mms:mma_3317 CpaB pilus assembly protein; Flp pilus assembly protein CpaB 2609087..2610124 Stenotrophomonas maltophilia R551-3 6476803 YP_002028707.1 CDS Smal_2321 NC_011071.1 2610143 2611501 D PFAM: type II and III secretion system protein; KEGG: mms:mma_3316 pilus assembly protein CpaC; type II and III secretion system protein 2610143..2611501 Stenotrophomonas maltophilia R551-3 6476804 YP_002028708.1 CDS Smal_2322 NC_011071.1 2611574 2612785 D KEGG: bur:Bcep18194_A4662 response regulator receiver domain protein (CheY-like); response regulator receiver domain-containing protein (CheY-like) 2611574..2612785 Stenotrophomonas maltophilia R551-3 6476805 YP_002028709.1 CDS Smal_2323 NC_011071.1 2612770 2614119 D PFAM: type II secretion system protein E; KEGG: bpd:BURPS668_1770 type II/IV secretion system protein; type II secretion system protein E 2612770..2614119 Stenotrophomonas maltophilia R551-3 6476806 YP_002028710.1 CDS Smal_2324 NC_011071.1 2614122 2615078 D PFAM: type II secretion system protein; KEGG: mms:mma_3313 Flp pilus assembly protein TadB; type II secretion system protein 2614122..2615078 Stenotrophomonas maltophilia R551-3 6476807 YP_002028711.1 CDS Smal_2325 NC_011071.1 2615107 2616042 D PFAM: type II secretion system protein; KEGG: dac:Daci_2068 type II secretion system protein; type II secretion system protein 2615107..2616042 Stenotrophomonas maltophilia R551-3 6476808 YP_002028712.1 CDS Smal_2326 NC_011071.1 2616042 2616962 D PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: reh:H16_B0190 flp pilus assembly protein TadD; hypothetical protein 2616042..2616962 Stenotrophomonas maltophilia R551-3 6476809 YP_002028713.1 CDS Smal_2327 NC_011071.1 2616959 2617399 D KEGG: bbr:BB1832 hypothetical protein; hypothetical protein 2616959..2617399 Stenotrophomonas maltophilia R551-3 6476810 YP_002028714.1 CDS Smal_2328 NC_011071.1 2617408 2619561 D KEGG: dac:Daci_2063 membrane protein-like protein; hypothetical protein 2617408..2619561 Stenotrophomonas maltophilia R551-3 6476811 YP_002028715.1 CDS Smal_2329 NC_011071.1 2619661 2620374 D KEGG: bpt:Bpet3370 putative lipoprotein; hypothetical protein 2619661..2620374 Stenotrophomonas maltophilia R551-3 6476812 YP_002028716.1 CDS Smal_2330 NC_011071.1 2620449 2620832 R KEGG: xcv:XCV2462 putative secreted protein; hypothetical protein complement(2620449..2620832) Stenotrophomonas maltophilia R551-3 6476813 YP_002028717.1 CDS Smal_2331 NC_011071.1 2621021 2621845 D PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1946 non-heme chloroperoxidase; alpha/beta hydrolase fold domain-containing protein 2621021..2621845 Stenotrophomonas maltophilia R551-3 6476814 YP_002028718.1 CDS Smal_2332 NC_011071.1 2621960 2623609 R PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: xcb:XC_1944 MFS transporter; hypothetical protein complement(2621960..2623609) Stenotrophomonas maltophilia R551-3 6476815 YP_002028719.1 CDS Smal_2333 NC_011071.1 2623603 2624886 R KEGG: gsu:GSU0801 hypothetical protein; hypothetical protein complement(2623603..2624886) Stenotrophomonas maltophilia R551-3 6476816 YP_002028720.1 CDS Smal_2334 NC_011071.1 2624865 2626835 R PFAM: Amidohydrolase 3; KEGG: xcb:XC_1943 hypothetical protein; amidohydrolase complement(2624865..2626835) Stenotrophomonas maltophilia R551-3 6476817 YP_002028721.1 CDS Smal_2335 NC_011071.1 2626832 2627257 R PFAM: DoxX family protein; KEGG: xcb:XC_1942 hypothetical protein; DoxX family protein complement(2626832..2627257) Stenotrophomonas maltophilia R551-3 6476818 YP_002028722.1 CDS Smal_2336 NC_011071.1 2627260 2627916 R PFAM: isochorismatase hydrolase; KEGG: xac:XAC2165 hydrolase; isochorismatase hydrolase complement(2627260..2627916) Stenotrophomonas maltophilia R551-3 6476819 YP_002028723.1 CDS Smal_2337 NC_011071.1 2627913 2628329 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xcb:XC_1940 transcriptional regulator; AraC family transcriptional regulator complement(2627913..2628329) Stenotrophomonas maltophilia R551-3 6476820 YP_002028724.1 CDS Smal_2338 NC_011071.1 2628407 2628739 R KEGG: aba:Acid345_2444 hypothetical protein; hypothetical protein complement(2628407..2628739) Stenotrophomonas maltophilia R551-3 6476821 YP_002028725.1 CDS Smal_2339 NC_011071.1 2628836 2631865 D PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; Two component regulator three Y domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: xcb:XC_1939 two-component system sensor protein; histidine kinase 2628836..2631865 Stenotrophomonas maltophilia R551-3 6476822 YP_002028726.1 CDS Smal_2340 NC_011071.1 2631858 2632511 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcv:XCV2187 two-component system regulatory protein, LuxR family; two component LuxR family transcriptional regulator 2631858..2632511 Stenotrophomonas maltophilia R551-3 6476823 YP_002028727.1 CDS Smal_2341 NC_011071.1 2632734 2634050 R PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; BAAT/Acyl-CoA thioester hydrolase; KEGG: pth:PTH_2363 hydrolases of the alpha/beta superfamily; BAAT/Acyl-CoA thioester hydrolase complement(2632734..2634050) Stenotrophomonas maltophilia R551-3 6476824 YP_002028728.1 CDS Smal_2342 NC_011071.1 2634164 2634886 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: ote:Oter_0067 two component transcriptional regulator, LytTR family; LytTR family two component transcriptional regulator complement(2634164..2634886) Stenotrophomonas maltophilia R551-3 6476825 YP_002028729.1 CDS Smal_2343 NC_011071.1 2634883 2635968 R PFAM: histidine kinase internal region; KEGG: cvi:CV_0103 probable two-component system sensor protein; histidine kinase internal region complement(2634883..2635968) Stenotrophomonas maltophilia R551-3 6476826 YP_002028730.1 CDS Smal_2344 NC_011071.1 2636105 2637562 R PFAM: amidohydrolase; KEGG: swi:Swit_2922 amidohydrolase; amidohydrolase complement(2636105..2637562) Stenotrophomonas maltophilia R551-3 6476827 YP_002028731.1 CDS Smal_2345 NC_011071.1 2637614 2638315 R PFAM: Ankyrin; KEGG: bav:BAV1818 ankyrin repeat-containing exported protein; ankyrin complement(2637614..2638315) Stenotrophomonas maltophilia R551-3 6476828 YP_002028732.1 CDS Smal_2346 NC_011071.1 2638438 2639319 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 2638438..2639319 Stenotrophomonas maltophilia R551-3 6476829 YP_002028733.1 CDS Smal_2347 NC_011071.1 2639487 2639924 D KEGG: bfr:BF1581 hypothetical protein; hypothetical protein 2639487..2639924 Stenotrophomonas maltophilia R551-3 6476830 YP_002028734.1 CDS Smal_2348 NC_011071.1 2639974 2641167 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2639974..2641167) Stenotrophomonas maltophilia R551-3 6476831 YP_002028735.1 CDS Smal_2349 NC_011071.1 2641318 2641959 D KEGG: met:M446_3051 hypothetical protein; hypothetical protein 2641318..2641959 Stenotrophomonas maltophilia R551-3 6476832 YP_002028736.1 CDS Smal_2350 NC_011071.1 2642006 2642443 R hypothetical protein complement(2642006..2642443) Stenotrophomonas maltophilia R551-3 6476833 YP_002028737.1 CDS Smal_2351 NC_011071.1 2642730 2642948 R hypothetical protein complement(2642730..2642948) Stenotrophomonas maltophilia R551-3 6476834 YP_002028738.1 CDS Smal_2352 NC_011071.1 2643228 2644607 D KEGG: bpm:BURPS1710b_A1616 hypothetical protein; hypothetical protein 2643228..2644607 Stenotrophomonas maltophilia R551-3 6476835 YP_002028739.1 CDS Smal_2353 NC_011071.1 2644665 2647391 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cvi:CV_1019 probable TonB-dependent receptor; TonB-dependent receptor complement(2644665..2647391) Stenotrophomonas maltophilia R551-3 6476836 YP_002028740.1 CDS Smal_2354 NC_011071.1 2647611 2648210 D KEGG: mes:Meso_0758 GCN5-related N-acetyltransferase; hypothetical protein 2647611..2648210 Stenotrophomonas maltophilia R551-3 6476837 YP_002028741.1 CDS Smal_2355 NC_011071.1 2648207 2648986 R PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: xcb:XC_2537 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase complement(2648207..2648986) Stenotrophomonas maltophilia R551-3 6476838 YP_002028742.1 CDS Smal_2356 NC_011071.1 2649055 2649711 R hypothetical protein complement(2649055..2649711) Stenotrophomonas maltophilia R551-3 6476839 YP_002028743.1 CDS Smal_2357 NC_011071.1 2649883 2650179 D KEGG: xcb:XC_0033 hypothetical protein; hypothetical protein 2649883..2650179 Stenotrophomonas maltophilia R551-3 6476840 YP_002028744.1 CDS Smal_2358 NC_011071.1 2650275 2651159 R KEGG: ccr:CC_0866 hypothetical protein; hypothetical protein complement(2650275..2651159) Stenotrophomonas maltophilia R551-3 6476841 YP_002028745.1 CDS Smal_2359 NC_011071.1 2651322 2653028 R component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase complement(2651322..2653028) Stenotrophomonas maltophilia R551-3 6476842 YP_002028746.1 CDS Smal_2360 NC_011071.1 2653025 2654164 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: xcv:XCV0110 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(2653025..2654164) Stenotrophomonas maltophilia R551-3 6476843 YP_002028747.1 CDS Smal_2361 NC_011071.1 2654169 2654933 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: cko:CKO_05060 hypothetical protein; GntR family transcriptional regulator complement(2654169..2654933) Stenotrophomonas maltophilia R551-3 6476844 YP_002028748.1 CDS Smal_2362 NC_011071.1 2654987 2656645 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: cko:CKO_05059 hypothetical protein; L-lactate transport complement(2654987..2656645) Stenotrophomonas maltophilia R551-3 6476845 YP_002028749.1 CDS Smal_2363 NC_011071.1 2656868 2657320 R PFAM: MgtC/SapB transporter; KEGG: hch:HCH_00686 uncharacterized membrane protein; MgtC/SapB transporter complement(2656868..2657320) Stenotrophomonas maltophilia R551-3 6476846 YP_002028750.1 CDS Smal_2364 NC_011071.1 2657450 2658208 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmw:Mmwyl1_2434 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2657450..2658208) Stenotrophomonas maltophilia R551-3 6476847 YP_002028751.1 CDS Smal_2365 NC_011071.1 2658654 2659607 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bbr:BB3898 transcriptional regulator; AraC family transcriptional regulator 2658654..2659607 Stenotrophomonas maltophilia R551-3 6476848 YP_002028752.1 CDS Smal_2366 NC_011071.1 2659653 2661506 R hypothetical protein complement(2659653..2661506) Stenotrophomonas maltophilia R551-3 6476849 YP_002028753.1 CDS Smal_2367 NC_011071.1 2661639 2663576 R PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: xcb:XC_1881 glutaryl-7-ACA acylase precursor; X-Pro dipeptidyl-peptidase domain-containing protein complement(2661639..2663576) Stenotrophomonas maltophilia R551-3 6476850 YP_002028754.1 CDS Smal_2368 NC_011071.1 2663752 2664138 R KEGG: pap:PSPA7_4077 hypothetical protein; hypothetical protein complement(2663752..2664138) Stenotrophomonas maltophilia R551-3 6476851 YP_002028755.1 CDS Smal_2369 NC_011071.1 2664138 2665496 R PFAM: major facilitator superfamily MFS_1; KEGG: pfo:PflO1_0943 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(2664138..2665496) Stenotrophomonas maltophilia R551-3 6476852 YP_002028756.1 CDS Smal_2370 NC_011071.1 2665602 2666498 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0944 transcriptional regulator, LysR family; LysR family transcriptional regulator 2665602..2666498 Stenotrophomonas maltophilia R551-3 6476853 YP_002028757.1 CDS Smal_2371 NC_011071.1 2666597 2669392 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: xcv:XCV1505 beta-glucosidase precursor; beta-glucosidase complement(2666597..2669392) Stenotrophomonas maltophilia R551-3 6476854 YP_002028758.1 CDS Smal_2372 NC_011071.1 2669731 2670165 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pau:PA14_09780 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 2669731..2670165 Stenotrophomonas maltophilia R551-3 6476855 YP_002028759.1 CDS Smal_2373 NC_011071.1 2670454 2671158 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_4540 transcriptional regulator, AraC family; AraC family transcriptional regulator 2670454..2671158 Stenotrophomonas maltophilia R551-3 6476856 YP_002028760.1 CDS Smal_2374 NC_011071.1 2671168 2672058 R PFAM: fatty acid hydroxylase; KEGG: pap:PSPA7_4808 hypothetical protein; fatty acid hydroxylase complement(2671168..2672058) Stenotrophomonas maltophilia R551-3 6476857 YP_002028761.1 CDS Smal_2375 NC_011071.1 2672238 2673143 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_4036 transcriptional regulator, LysR family; LysR family transcriptional regulator 2672238..2673143 Stenotrophomonas maltophilia R551-3 6476858 YP_002028762.1 CDS Smal_2376 NC_011071.1 2673236 2673886 D PFAM: DSBA oxidoreductase; KEGG: sit:TM1040_3237 DsbA oxidoreductase; DSBA oxidoreductase 2673236..2673886 Stenotrophomonas maltophilia R551-3 6476859 YP_002028763.1 CDS Smal_2377 NC_011071.1 2673922 2674929 D PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase; cyclase family protein 2673922..2674929 Stenotrophomonas maltophilia R551-3 6476860 YP_002028764.1 CDS Smal_2378 NC_011071.1 2675226 2675840 D KEGG: psa:PST_2344 cell division inhibitor SulA, putative; cell division inhibitor SulA 2675226..2675840 Stenotrophomonas maltophilia R551-3 6476861 YP_002028765.1 CDS Smal_2379 NC_011071.1 2675850 2677259 D KEGG: pmy:Pmen_1935 nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein; DNA repair nucleotidyltransferase/DNA polymerase-like protein 2675850..2677259 Stenotrophomonas maltophilia R551-3 6476862 YP_002028766.1 CDS dnaE2 NC_011071.1 2677266 2680376 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2677266..2680376 Stenotrophomonas maltophilia R551-3 6476863 YP_002028767.1 CDS Smal_2381 NC_011071.1 2680458 2680964 D KEGG: ade:Adeh_0025 hypothetical protein; hypothetical protein 2680458..2680964 Stenotrophomonas maltophilia R551-3 6476864 YP_002028768.1 CDS Smal_2382 NC_011071.1 2681067 2682353 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bbr:BB2872 GntR-family transcriptional regulator; GntR family transcriptional regulator complement(2681067..2682353) Stenotrophomonas maltophilia R551-3 6476865 YP_002028769.1 CDS Smal_2383 NC_011071.1 2682430 2683203 D PFAM: alanine racemase domain protein; KEGG: bbr:BB2871 hypothetical protein; alanine racemase domain-containing protein 2682430..2683203 Stenotrophomonas maltophilia R551-3 6476866 YP_002028770.1 CDS Smal_2384 NC_011071.1 2683200 2683901 D PFAM: glutamine amidotransferase class-I; KEGG: cvi:CV_3746 glutamine amidotransferase; glutamine amidotransferase 2683200..2683901 Stenotrophomonas maltophilia R551-3 6476867 YP_002028771.1 CDS Smal_2385 NC_011071.1 2683898 2684122 D KEGG: stt:t0422 hypothetical protein; hypothetical protein 2683898..2684122 Stenotrophomonas maltophilia R551-3 6476868 YP_002028772.1 CDS Smal_2386 NC_011071.1 2684220 2684726 D KEGG: pfl:PFL_3437 hypothetical protein; hypothetical protein 2684220..2684726 Stenotrophomonas maltophilia R551-3 6476869 YP_002028773.1 CDS Smal_2387 NC_011071.1 2684854 2685363 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_19990 putative sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 2684854..2685363 Stenotrophomonas maltophilia R551-3 6476870 YP_002028774.1 CDS Smal_2388 NC_011071.1 2685360 2686286 D PFAM: FecR protein; KEGG: nwi:Nwi_3044 FecR protein; anti-FecI sigma factor FecR 2685360..2686286 Stenotrophomonas maltophilia R551-3 6476871 YP_002028775.1 CDS Smal_2389 NC_011071.1 2686351 2688822 D PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: sbc:SbBS512_A0115 TonB-dependent receptor; TonB-dependent receptor 2686351..2688822 Stenotrophomonas maltophilia R551-3 6476872 YP_002028776.1 CDS Smal_2390 NC_011071.1 2688809 2689609 D PFAM: protein of unknown function DUF399; KEGG: cko:CKO_00039 hypothetical protein; hypothetical protein 2688809..2689609 Stenotrophomonas maltophilia R551-3 6476873 YP_002028777.1 CDS Smal_2391 NC_011071.1 2689602 2690315 D TIGRFAM: TonB family protein; KEGG: pfo:PflO1_5557 TonB-like; TonB family protein 2689602..2690315 Stenotrophomonas maltophilia R551-3 6476874 YP_002028778.1 CDS Smal_2392 NC_011071.1 2690513 2691415 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpp:lpp2043 hypothetical protein; cation diffusion facilitator family transporter complement(2690513..2691415) Stenotrophomonas maltophilia R551-3 6476875 YP_002028779.1 CDS Smal_2393 NC_011071.1 2691444 2693732 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: psa:PST_2250 probable Orn/Arg/Lys decarboxylase; lysine decarboxylase complement(2691444..2693732) Stenotrophomonas maltophilia R551-3 6476876 YP_002028780.1 CDS Smal_2394 NC_011071.1 2693753 2695105 R PFAM: amino acid permease-associated region; KEGG: bvi:Bcep1808_5439 arginine:agmatin antiporter; arginine:agmatin antiporter complement(2693753..2695105) Stenotrophomonas maltophilia R551-3 6476877 YP_002028781.1 CDS Smal_2395 NC_011071.1 2695182 2696615 R PFAM: porin; KEGG: sus:Acid_5803 hypothetical protein; porin complement(2695182..2696615) Stenotrophomonas maltophilia R551-3 6476878 YP_002028782.1 CDS Smal_2396 NC_011071.1 2697129 2697971 R KEGG: bav:BAV2728 thiol:disulfide interchange protein; thiol:disulfide interchange protein complement(2697129..2697971) Stenotrophomonas maltophilia R551-3 6476879 YP_002028783.1 CDS Smal_2397 NC_011071.1 2698002 2698805 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: psa:PST_3696 thiol-disulfide isomerase and thioredoxin; redoxin domain-containing protein complement(2698002..2698805) Stenotrophomonas maltophilia R551-3 6476880 YP_002028784.1 CDS Smal_2398 NC_011071.1 2698886 2699953 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfl:PFL_5538 transcriptional regulator, AraC family; cyclic nucleotide-binding protein complement(2698886..2699953) Stenotrophomonas maltophilia R551-3 6476881 YP_002028785.1 CDS Smal_2399 NC_011071.1 2700140 2700538 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: met:M446_0747 transcriptional regulator, MerR family; MerR family transcriptional regulator 2700140..2700538 Stenotrophomonas maltophilia R551-3 6476882 YP_002028786.1 CDS Smal_2400 NC_011071.1 2701615 2702031 R PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_0341 AttT protein; N-acetyltransferase GCN5 complement(2701615..2702031) Stenotrophomonas maltophilia R551-3 6476889 YP_002028787.1 CDS Smal_2401 NC_011071.1 2702109 2703065 D KEGG: bph:Bphy_7577 putative uncharacterized conserved protein; hypothetical protein 2702109..2703065 Stenotrophomonas maltophilia R551-3 6476890 YP_002028788.1 CDS Smal_2402 NC_011071.1 2703076 2703456 R PFAM: response regulator receiver; KEGG: xac:XAC2055 two-component system regulatory protein; response regulator receiver and unknown domain-containing protein complement(2703076..2703456) Stenotrophomonas maltophilia R551-3 6476891 YP_002028789.1 CDS Smal_2403 NC_011071.1 2703746 2704288 D PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3593 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2703746..2704288 Stenotrophomonas maltophilia R551-3 6476893 YP_002028790.1 CDS Smal_2404 NC_011071.1 2704404 2705843 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_2634 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase 2704404..2705843 Stenotrophomonas maltophilia R551-3 6476894 YP_002028791.1 CDS Smal_2405 NC_011071.1 2705840 2707666 R KEGG: bra:BRADO1824 putative methyl-accepting chemotaxis protein (MCP) with multiple PAS domains; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer complement(2705840..2707666) Stenotrophomonas maltophilia R551-3 6476895 YP_002028792.1 CDS Smal_2406 NC_011071.1 2707922 2708467 R PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_5716 acetyltransferase; N-acetyltransferase GCN5 complement(2707922..2708467) Stenotrophomonas maltophilia R551-3 6476896 YP_002028793.1 CDS Smal_2407 NC_011071.1 2708622 2709710 D KEGG: xcc:XCC2402 hypothetical protein; hypothetical protein 2708622..2709710 Stenotrophomonas maltophilia R551-3 6476897 YP_002028794.1 CDS Smal_2408 NC_011071.1 2709757 2709987 R hypothetical protein complement(2709757..2709987) Stenotrophomonas maltophilia R551-3 6476898 YP_002028795.1 CDS Smal_2409 NC_011071.1 2710050 2712239 R KEGG: xcv:XCV0667 putative sensor protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2710050..2712239) Stenotrophomonas maltophilia R551-3 6476899 YP_002028796.1 CDS Smal_2410 NC_011071.1 2712447 2714834 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: xcb:XC_1964 transcription-related protein; RNA binding S1 domain-containing protein complement(2712447..2714834) Stenotrophomonas maltophilia R551-3 6476900 YP_002028797.1 CDS Smal_2411 NC_011071.1 2715042 2715257 R KEGG: xcv:XCV2213 hypothetical protein; hypothetical protein complement(2715042..2715257) Stenotrophomonas maltophilia R551-3 6476901 YP_002028798.1 CDS Smal_2412 NC_011071.1 2716029 2716481 R KEGG: xcb:XC_1961 hypothetical protein; hypothetical protein complement(2716029..2716481) Stenotrophomonas maltophilia R551-3 6476902 YP_002028799.1 CDS Smal_2413 NC_011071.1 2716478 2716681 R PFAM: PspC domain protein; KEGG: xom:XOO_2087 hypothetical protein; phage shock protein C, PspC complement(2716478..2716681) Stenotrophomonas maltophilia R551-3 6476903 YP_002028800.1 CDS Smal_2414 NC_011071.1 2716746 2717099 R KEGG: xcb:XC_0338 hypothetical protein; hypothetical protein complement(2716746..2717099) Stenotrophomonas maltophilia R551-3 6476904 YP_002028801.1 CDS Smal_2415 NC_011071.1 2717176 2718243 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1959 poly (3-hydroxybutyric acid) synthase; poly(R)-hydroxyalkanoic acid synthase subunit PhaC complement(2717176..2718243) Stenotrophomonas maltophilia R551-3 6476905 YP_002028802.1 CDS Smal_2416 NC_011071.1 2718240 2719304 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit; PFAM: Poly(R)-hydroxyalkanoic acid synthase class III PhaE subunit; KEGG: xcb:XC_1958 PHA synthase subunit; poly(R)-hydroxyalkanoic acid synthase subunit PhaE complement(2718240..2719304) Stenotrophomonas maltophilia R551-3 6476906 YP_002028803.1 CDS Smal_2417 NC_011071.1 2719327 2719941 R TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xcv:XCV2207 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(2719327..2719941) Stenotrophomonas maltophilia R551-3 6476907 YP_002028804.1 CDS Smal_2418 NC_011071.1 2720286 2720936 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ilo:IL0784 SAM-dependent methyltransferase; type 11 methyltransferase 2720286..2720936 Stenotrophomonas maltophilia R551-3 6476908 YP_002028805.1 CDS Smal_2419 NC_011071.1 2721012 2721500 R PFAM: NUDIX hydrolase; KEGG: xac:XAC2044 7,8-dihydro-8-oxoguanine-triphosphatase; NUDIX hydrolase complement(2721012..2721500) Stenotrophomonas maltophilia R551-3 6476909 YP_002028806.1 CDS Smal_2420 NC_011071.1 2721541 2722050 R PFAM: protein of unknown function DUF1249; KEGG: xcb:XC_1954 hypothetical protein; hypothetical protein complement(2721541..2722050) Stenotrophomonas maltophilia R551-3 6476910 YP_002028807.1 CDS Smal_2421 NC_011071.1 2722220 2723041 R PFAM: protein of unknown function DUF299; KEGG: xom:XOO_2080 hypothetical protein; hypothetical protein complement(2722220..2723041) Stenotrophomonas maltophilia R551-3 6476911 YP_002028808.1 CDS Smal_2422 NC_011071.1 2723186 2725564 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2723186..2725564 Stenotrophomonas maltophilia R551-3 6476912 YP_002028809.1 CDS Smal_2423 NC_011071.1 2725701 2726594 D PFAM: MscS Mechanosensitive ion channel; KEGG: xac:XAC2040 small conductance mechanosensitive ion channel; mechanosensitive ion channel MscS 2725701..2726594 Stenotrophomonas maltophilia R551-3 6476913 YP_002028810.1 CDS Smal_2424 NC_011071.1 2726682 2727797 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pap:PSPA7_4051 probable oxidoreductase; NADH:flavin oxidoreductase complement(2726682..2727797) Stenotrophomonas maltophilia R551-3 6476914 YP_002028811.1 CDS Smal_2425 NC_011071.1 2727990 2728862 R KEGG: pfl:PFL_2383 LasA; LasA protein complement(2727990..2728862) Stenotrophomonas maltophilia R551-3 6476915 YP_002028812.1 CDS Smal_2426 NC_011071.1 2729022 2729594 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(2729022..2729594) Stenotrophomonas maltophilia R551-3 6476916 YP_002028813.1 CDS Smal_2427 NC_011071.1 2729669 2730193 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcv:XCV2199 putative cytidine / deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase complement(2729669..2730193) Stenotrophomonas maltophilia R551-3 6476917 YP_002028814.1 CDS Smal_2428 NC_011071.1 2730269 2730628 R PFAM: helix-turn-helix HxlR type; KEGG: azc:AZC_0421 putative transcriptional regulator; HxlR family transcriptional regulator complement(2730269..2730628) Stenotrophomonas maltophilia R551-3 6476918 YP_002028815.1 CDS Smal_2429 NC_011071.1 2730706 2731473 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: csa:Csal_0147 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2730706..2731473 Stenotrophomonas maltophilia R551-3 6476919 YP_002028816.1 CDS Smal_2430 NC_011071.1 2731542 2731979 D PFAM: GCN5-related N-acetyltransferase; KEGG: dac:Daci_4376 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2731542..2731979 Stenotrophomonas maltophilia R551-3 6476920 YP_002028817.1 CDS Smal_2431 NC_011071.1 2732038 2732244 D hypothetical protein 2732038..2732244 Stenotrophomonas maltophilia R551-3 6476921 YP_002028818.1 CDS Smal_2432 NC_011071.1 2732263 2732769 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3291 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2732263..2732769) Stenotrophomonas maltophilia R551-3 6476922 YP_002028819.1 CDS Smal_2433 NC_011071.1 2733048 2733398 D hypothetical protein 2733048..2733398 Stenotrophomonas maltophilia R551-3 6476923 YP_002028820.1 CDS Smal_2434 NC_011071.1 2733438 2734091 D KEGG: xcb:XC_0585 hypothetical protein; hypothetical protein 2733438..2734091 Stenotrophomonas maltophilia R551-3 6476924 YP_002028821.1 CDS Smal_2435 NC_011071.1 2734088 2735416 D KEGG: xcv:XCV0608 putative lipase; putative lipase 2734088..2735416 Stenotrophomonas maltophilia R551-3 6476925 YP_002028822.1 CDS Smal_2436 NC_011071.1 2735471 2736745 R KEGG: xac:XAC1162 hypothetical protein; hypothetical protein complement(2735471..2736745) Stenotrophomonas maltophilia R551-3 6476926 YP_002028823.1 CDS Smal_2437 NC_011071.1 2736843 2737850 R KEGG: xac:XAC0466 lytic enzyme; chitinase-like protein complement(2736843..2737850) Stenotrophomonas maltophilia R551-3 6476927 YP_002028824.1 CDS Smal_2438 NC_011071.1 2737908 2738444 R KEGG: xac:XAC0467 hypothetical protein; hypothetical protein complement(2737908..2738444) Stenotrophomonas maltophilia R551-3 6476928 YP_002028825.1 CDS Smal_2439 NC_011071.1 2743048 2744208 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xcb:XC_2016 VirB6 protein; TrbL/VirB6 plasmid conjugal transfer protein complement(2743048..2744208) Stenotrophomonas maltophilia R551-3 6476929 YP_002028826.1 CDS Smal_2440 NC_011071.1 2744255 2745106 R KEGG: xcv:XCV3391 hypothetical protein; hypothetical protein complement(2744255..2745106) Stenotrophomonas maltophilia R551-3 6476930 YP_002028827.1 CDS Smal_2441 NC_011071.1 2745103 2747550 R TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: xac:XAC2614 VirB4 protein; type IV secretion/conjugal transfer ATPase complement(2745103..2747550) Stenotrophomonas maltophilia R551-3 6476931 YP_002028828.1 CDS Smal_2442 NC_011071.1 2747632 2747940 R PFAM: type IV secretory pathway VirB3 family protein; KEGG: xcb:XC_1638 VirB3 protein; type IV secretory pathway VirB3 family protein complement(2747632..2747940) Stenotrophomonas maltophilia R551-3 6476932 YP_002028829.1 CDS Smal_2443 NC_011071.1 2747933 2748343 R PFAM: Conjugal transfer protein TrbC; KEGG: xcb:XC_1637 VirB2 protein; conjugal transfer protein Trbc complement(2747933..2748343) Stenotrophomonas maltophilia R551-3 6476933 YP_002028830.1 CDS Smal_2444 NC_011071.1 2748417 2749400 R PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC2617 VirB1 protein; Lytic transglycosylase complement(2748417..2749400) Stenotrophomonas maltophilia R551-3 6476934 YP_002028831.1 CDS Smal_2445 NC_011071.1 2749404 2750447 R TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E; KEGG: xcb:XC_1635 VirB11 protein; P-type DNA transfer ATPase VirB11 complement(2749404..2750447) Stenotrophomonas maltophilia R551-3 6476935 YP_002028832.1 CDS Smal_2446 NC_011071.1 2750462 2751715 R PFAM: conjugation TrbI family protein; KEGG: xcb:XC_1634 VirB10 protein; conjugation TrbI family protein complement(2750462..2751715) Stenotrophomonas maltophilia R551-3 6476936 YP_002028833.1 CDS Smal_2447 NC_011071.1 2751712 2752491 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: xac:XAC2620 VirB9 protein; conjugal transfer protein TrbG complement(2751712..2752491) Stenotrophomonas maltophilia R551-3 6476937 YP_002028834.1 CDS Smal_2448 NC_011071.1 2752488 2753543 R PFAM: VirB8 family protein; KEGG: xac:XAC2621 VirB8 protein; VirB8 family protein complement(2752488..2753543) Stenotrophomonas maltophilia R551-3 6476938 YP_002028835.1 CDS Smal_2449 NC_011071.1 2753633 2754079 R KEGG: xac:XAC2622 hypothetical protein; hypothetical protein complement(2753633..2754079) Stenotrophomonas maltophilia R551-3 6476939 YP_002028836.1 CDS Smal_2450 NC_011071.1 2754076 2754303 R hypothetical protein complement(2754076..2754303) Stenotrophomonas maltophilia R551-3 6476940 YP_002028837.1 CDS Smal_2451 NC_011071.1 2754506 2756185 R PFAM: TRAG family protein; KEGG: xcv:XCV2810 type IV secretion system protein VirD4; TRAG family protein complement(2754506..2756185) Stenotrophomonas maltophilia R551-3 6476941 YP_002028838.1 CDS Smal_2452 NC_011071.1 2756222 2756479 R KEGG: xcb:XC_1629 hypothetical protein; hypothetical protein complement(2756222..2756479) Stenotrophomonas maltophilia R551-3 6476942 YP_002028839.1 CDS Smal_2453 NC_011071.1 2756682 2757926 D PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV1418 putative arabinose efflux porter; major facilitator superfamily protein 2756682..2757926 Stenotrophomonas maltophilia R551-3 6476943 YP_002028840.1 CDS Smal_2454 NC_011071.1 2757943 2758422 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pmy:Pmen_3219 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2757943..2758422) Stenotrophomonas maltophilia R551-3 6476944 YP_002028841.1 CDS Smal_2455 NC_011071.1 2758512 2759750 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bmc:BAbS19_II02080 NADH oxidase; NADH:flavin oxidoreductase 2758512..2759750 Stenotrophomonas maltophilia R551-3 6476945 YP_002028842.1 CDS Smal_2456 NC_011071.1 2759844 2760320 D hypothetical protein 2759844..2760320 Stenotrophomonas maltophilia R551-3 6476946 YP_002028843.1 CDS Smal_2457 NC_011071.1 2760371 2760694 D hypothetical protein 2760371..2760694 Stenotrophomonas maltophilia R551-3 6476947 YP_002028844.1 CDS Smal_2458 NC_011071.1 2760821 2761066 D hypothetical protein 2760821..2761066 Stenotrophomonas maltophilia R551-3 6476948 YP_002028845.1 CDS Smal_2459 NC_011071.1 2761112 2762641 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bxe:Bxe_B2639 putative oxygenase; monooxygenase FAD-binding complement(2761112..2762641) Stenotrophomonas maltophilia R551-3 6476949 YP_002028846.1 CDS Smal_2460 NC_011071.1 2762724 2763368 D PFAM: regulatory protein TetR; KEGG: mrd:Mrad2831_4515 transcriptional regulator, TetR family; TetR family transcriptional regulator 2762724..2763368 Stenotrophomonas maltophilia R551-3 6476950 YP_002028847.1 CDS Smal_2461 NC_011071.1 2763442 2765583 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_2846 iron receptor; TonB-dependent siderophore receptor 2763442..2765583 Stenotrophomonas maltophilia R551-3 6476951 YP_002028848.1 CDS Smal_2462 NC_011071.1 2765640 2765921 R KEGG: mmr:Mmar10_0666 hypothetical protein; hypothetical protein complement(2765640..2765921) Stenotrophomonas maltophilia R551-3 6476952 YP_002028849.1 CDS Smal_2463 NC_011071.1 2766131 2766805 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bja:blr4802 two-component response regulator; winged helix family two component transcriptional regulator 2766131..2766805 Stenotrophomonas maltophilia R551-3 6476953 YP_002028850.1 CDS Smal_2464 NC_011071.1 2766805 2768154 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: atc:AGR_L_2107 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2766805..2768154 Stenotrophomonas maltophilia R551-3 6476954 YP_002028851.1 CDS Smal_2465 NC_011071.1 2768229 2768894 D KEGG: bpm:BURPS1710b_2133 ABC transporter, permease protein; hypothetical protein 2768229..2768894 Stenotrophomonas maltophilia R551-3 6476955 YP_002028852.1 CDS Smal_2466 NC_011071.1 2769030 2770220 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO5685 putative accessory protein to ABC-type macrolide transport protein MacB; RND family efflux transporter MFP subunit 2769030..2770220 Stenotrophomonas maltophilia R551-3 6476956 YP_002028853.1 CDS Smal_2467 NC_011071.1 2770229 2772181 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: bav:BAV2813 macrolide-specific ABC-type efflux carrier; ABC transporter-like protein 2770229..2772181 Stenotrophomonas maltophilia R551-3 6476957 YP_002028854.1 CDS Smal_2468 NC_011071.1 2772272 2772667 D KEGG: ret:RHE_CH02573 hypothetical protein; hypothetical protein 2772272..2772667 Stenotrophomonas maltophilia R551-3 6476958 YP_002028855.1 CDS Smal_2469 NC_011071.1 2772694 2773071 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: reu:Reut_A3217 calcium-binding EF-hand; putative signal transduction protein 2772694..2773071 Stenotrophomonas maltophilia R551-3 6476959 YP_002028856.1 CDS Smal_2470 NC_011071.1 2773187 2773384 D hypothetical protein 2773187..2773384 Stenotrophomonas maltophilia R551-3 6476960 YP_002028857.1 CDS Smal_2473 NC_011071.1 2774849 2775712 R KEGG: xcb:XC_4270 hypothetical protein; hypothetical protein complement(2774849..2775712) Stenotrophomonas maltophilia R551-3 6476962 YP_002028858.1 CDS Smal_2474 NC_011071.1 2775910 2776257 R PFAM: helix-turn-helix HxlR type; KEGG: bmn:BMA10247_1870 transcriptional regulator family protein; HxlR family transcriptional regulator complement(2775910..2776257) Stenotrophomonas maltophilia R551-3 6476963 YP_002028859.1 CDS Smal_2475 NC_011071.1 2776360 2777349 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pol:Bpro_0105 alcohol dehydrogenase, zinc-binding; YhdH/YhfP family quinone oxidoreductase 2776360..2777349 Stenotrophomonas maltophilia R551-3 6476964 YP_002028860.1 CDS Smal_2476 NC_011071.1 2777406 2777798 D hypothetical protein 2777406..2777798 Stenotrophomonas maltophilia R551-3 6476965 YP_002028861.1 CDS Smal_2477 NC_011071.1 2777868 2778092 R hypothetical protein complement(2777868..2778092) Stenotrophomonas maltophilia R551-3 6476966 YP_002028862.1 CDS Smal_2478 NC_011071.1 2778256 2781009 D PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: pna:Pnap_4961 UvrD/REP helicase; UvrD/REP helicase 2778256..2781009 Stenotrophomonas maltophilia R551-3 6476967 YP_002028863.1 CDS Smal_2479 NC_011071.1 2781264 2782517 R KEGG: aav:Aave_0511 hypothetical protein; hypothetical protein complement(2781264..2782517) Stenotrophomonas maltophilia R551-3 6476968 YP_002028864.1 CDS Smal_2480 NC_011071.1 2783039 2784232 D PFAM: integrase family protein; KEGG: bxe:Bxe_C0409 putative phage integrase; integrase family protein 2783039..2784232 Stenotrophomonas maltophilia R551-3 6476969 YP_002028865.1 CDS Smal_2481 NC_011071.1 2784229 2784870 R KEGG: sbm:Shew185_2095 hypothetical protein; hypothetical protein complement(2784229..2784870) Stenotrophomonas maltophilia R551-3 6476970 YP_002028866.1 CDS Smal_2482 NC_011071.1 2785288 2786325 R KEGG: rde:RD1_4058 hypothetical protein; hypothetical protein complement(2785288..2786325) Stenotrophomonas maltophilia R551-3 6476971 YP_002028867.1 CDS Smal_2483 NC_011071.1 2786719 2787309 R hypothetical protein complement(2786719..2787309) Stenotrophomonas maltophilia R551-3 6476972 YP_002028868.1 CDS Smal_2484 NC_011071.1 2788120 2788734 R hypothetical protein complement(2788120..2788734) Stenotrophomonas maltophilia R551-3 6476973 YP_002028869.1 CDS Smal_2485 NC_011071.1 2789221 2790096 D KEGG: ecc:c5321 hypothetical protein; hypothetical protein 2789221..2790096 Stenotrophomonas maltophilia R551-3 6476974 YP_002028870.1 CDS Smal_2486 NC_011071.1 2790739 2791407 R hypothetical protein complement(2790739..2791407) Stenotrophomonas maltophilia R551-3 6476975 YP_002028871.1 CDS Smal_2487 NC_011071.1 2791407 2791703 R hypothetical protein complement(2791407..2791703) Stenotrophomonas maltophilia R551-3 6476976 YP_002028872.1 CDS Smal_2488 NC_011071.1 2791755 2795117 R PFAM: Carbohydrate-binding CenC domain protein; KEGG: ppg:PputGB1_3392 protein of unknown function DUF1983; carbohydrate-binding CenC domain-containing protein complement(2791755..2795117) Stenotrophomonas maltophilia R551-3 6476977 YP_002028873.1 CDS Smal_2489 NC_011071.1 2795124 2799707 R TIGRFAM: phage tape measure protein; KEGG: pst:PSPTO_4046 tail tape meausure protein; phage tape measure protein complement(2795124..2799707) Stenotrophomonas maltophilia R551-3 6476978 YP_002028874.1 CDS Smal_2490 NC_011071.1 2800126 2800869 R hypothetical protein complement(2800126..2800869) Stenotrophomonas maltophilia R551-3 6476979 YP_002028875.1 CDS Smal_2491 NC_011071.1 2800892 2802859 R KEGG: rci:RRC34 hypothetical protein; hypothetical protein complement(2800892..2802859) Stenotrophomonas maltophilia R551-3 6476980 YP_002028876.1 CDS Smal_2492 NC_011071.1 2802862 2803077 R hypothetical protein complement(2802862..2803077) Stenotrophomonas maltophilia R551-3 6476981 YP_002028877.1 CDS Smal_2493 NC_011071.1 2803155 2803529 R hypothetical protein complement(2803155..2803529) Stenotrophomonas maltophilia R551-3 6476982 YP_002028878.1 CDS Smal_2494 NC_011071.1 2803651 2804124 R KEGG: shw:Sputw3181_2473 prophage LambdaSo, major tail protein V, putative; hypothetical protein complement(2803651..2804124) Stenotrophomonas maltophilia R551-3 6476983 YP_002028879.1 CDS Smal_2495 NC_011071.1 2804203 2804565 R KEGG: shw:Sputw3181_2474 hypothetical protein; hypothetical protein complement(2804203..2804565) Stenotrophomonas maltophilia R551-3 6476984 YP_002028880.1 CDS Smal_2496 NC_011071.1 2804562 2805065 R TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: acb:A1S_1593 hypothetical protein; phage protein, HK97 gp10 family complement(2804562..2805065) Stenotrophomonas maltophilia R551-3 6476985 YP_002028881.1 CDS Smal_2497 NC_011071.1 2805058 2805393 R TIGRFAM: phage head-tail adaptor; KEGG: abm:ABSDF1034 putative head-tail adaptor; phage head-tail adaptor complement(2805058..2805393) Stenotrophomonas maltophilia R551-3 6476986 YP_002028882.1 CDS Smal_2498 NC_011071.1 2805390 2805869 R KEGG: dac:Daci_1636 hypothetical protein; hypothetical protein complement(2805390..2805869) Stenotrophomonas maltophilia R551-3 6476987 YP_002028883.1 CDS Smal_2499 NC_011071.1 2805871 2806341 R KEGG: bmu:Bmul_3868 hypothetical protein; hypothetical protein complement(2805871..2806341) Stenotrophomonas maltophilia R551-3 6476988 YP_002028884.1 CDS Smal_2500 NC_011071.1 2806403 2807653 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bmu:Bmul_3867 phage major capsid protein, HK97 family; phage major capsid protein, HK97 family complement(2806403..2807653) Stenotrophomonas maltophilia R551-3 6476989 YP_002028885.1 CDS Smal_2501 NC_011071.1 2807665 2808507 R PFAM: peptidase S14 ClpP; KEGG: bmu:Bmul_3866 peptidase S14 ClpP; peptidase S14 ClpP complement(2807665..2808507) Stenotrophomonas maltophilia R551-3 6476990 YP_002028886.1 CDS Smal_2502 NC_011071.1 2808485 2809747 R TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bmu:Bmul_3865 phage portal protein, HK97 family; phage portal protein, HK97 family complement(2808485..2809747) Stenotrophomonas maltophilia R551-3 6476991 YP_002028887.1 CDS Smal_2503 NC_011071.1 2809756 2811564 R PFAM: Terminase; KEGG: rsh:Rsph17029_0645 phage terminase; terminase complement(2809756..2811564) Stenotrophomonas maltophilia R551-3 6476992 YP_002028888.1 CDS Smal_2504 NC_011071.1 2811593 2811844 R KEGG: bja:bll8251 hypothetical protein; hypothetical protein complement(2811593..2811844) Stenotrophomonas maltophilia R551-3 6476993 YP_002028889.1 CDS Smal_2505 NC_011071.1 2812122 2812445 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mem:Memar_0383 HNH endonuclease; HNH endonuclease complement(2812122..2812445) Stenotrophomonas maltophilia R551-3 6476994 YP_002028890.1 CDS Smal_2506 NC_011071.1 2812445 2812735 R hypothetical protein complement(2812445..2812735) Stenotrophomonas maltophilia R551-3 6476995 YP_002028891.1 CDS Smal_2507 NC_011071.1 2812898 2813257 R KEGG: bmu:Bmul_3855 hypothetical protein; hypothetical protein complement(2812898..2813257) Stenotrophomonas maltophilia R551-3 6476996 YP_002028892.1 CDS Smal_2508 NC_011071.1 2813363 2813959 R KEGG: xac:XAC2244 hypothetical protein; hypothetical protein complement(2813363..2813959) Stenotrophomonas maltophilia R551-3 6476997 YP_002028893.1 CDS Smal_2509 NC_011071.1 2814130 2814366 R KEGG: cau:Caur_2913 hypothetical protein; hypothetical protein complement(2814130..2814366) Stenotrophomonas maltophilia R551-3 6476998 YP_002028894.1 CDS Smal_2510 NC_011071.1 2814571 2814885 R hypothetical protein complement(2814571..2814885) Stenotrophomonas maltophilia R551-3 6476999 YP_002028895.1 CDS Smal_2511 NC_011071.1 2814882 2815370 R PFAM: glycoside hydrolase family 24; KEGG: ecx:EcHS_A0304 phage lysozyme; lysozyme complement(2814882..2815370) Stenotrophomonas maltophilia R551-3 6477000 YP_002028896.1 CDS Smal_2512 NC_011071.1 2815467 2816171 R KEGG: xfm:Xfasm12_1313 hypothetical protein; hypothetical protein complement(2815467..2816171) Stenotrophomonas maltophilia R551-3 6477001 YP_002028897.1 CDS Smal_2513 NC_011071.1 2816242 2816445 R hypothetical protein complement(2816242..2816445) Stenotrophomonas maltophilia R551-3 6477002 YP_002028898.1 CDS Smal_2514 NC_011071.1 2816442 2816810 R hypothetical protein complement(2816442..2816810) Stenotrophomonas maltophilia R551-3 6477003 YP_002028899.1 CDS Smal_2515 NC_011071.1 2817000 2817713 R KEGG: xfm:Xfasm12_1334 hypothetical protein; hypothetical protein complement(2817000..2817713) Stenotrophomonas maltophilia R551-3 6477004 YP_002028900.1 CDS Smal_2517 NC_011071.1 2818999 2819310 R hypothetical protein complement(2818999..2819310) Stenotrophomonas maltophilia R551-3 6477006 YP_002028901.1 CDS Smal_2518 NC_011071.1 2819307 2819837 R KEGG: bbr:BB1679 hypothetical protein; hypothetical protein complement(2819307..2819837) Stenotrophomonas maltophilia R551-3 6477007 YP_002028902.1 CDS Smal_2519 NC_011071.1 2819947 2820378 R PFAM: CI repressor; KEGG: bja:bll5480 putative chaperone; CI repressor complement(2819947..2820378) Stenotrophomonas maltophilia R551-3 6477008 YP_002028903.1 CDS Smal_2520 NC_011071.1 2820899 2821240 D hypothetical protein 2820899..2821240 Stenotrophomonas maltophilia R551-3 6477009 YP_002028904.1 CDS Smal_2521 NC_011071.1 2821392 2821583 D hypothetical protein 2821392..2821583 Stenotrophomonas maltophilia R551-3 6477010 YP_002028905.1 CDS Smal_2522 NC_011071.1 2821580 2821795 D hypothetical protein 2821580..2821795 Stenotrophomonas maltophilia R551-3 6477011 YP_002028906.1 CDS Smal_2523 NC_011071.1 2821792 2822091 D hypothetical protein 2821792..2822091 Stenotrophomonas maltophilia R551-3 6477012 YP_002028907.1 CDS Smal_2524 NC_011071.1 2822091 2822333 D hypothetical protein 2822091..2822333 Stenotrophomonas maltophilia R551-3 6477013 YP_002028908.1 CDS Smal_2525 NC_011071.1 2822421 2822804 D hypothetical protein 2822421..2822804 Stenotrophomonas maltophilia R551-3 6477014 YP_002028909.1 CDS Smal_2526 NC_011071.1 2822808 2823059 D hypothetical protein 2822808..2823059 Stenotrophomonas maltophilia R551-3 6477015 YP_002028910.1 CDS Smal_2527 NC_011071.1 2823059 2823610 D KEGG: pap:PSPA7_2371 hypothetical protein; hypothetical protein 2823059..2823610 Stenotrophomonas maltophilia R551-3 6477016 YP_002028911.1 CDS Smal_2528 NC_011071.1 2823603 2824454 D hypothetical protein 2823603..2824454 Stenotrophomonas maltophilia R551-3 6477017 YP_002028912.1 CDS Smal_2529 NC_011071.1 2824753 2825067 D KEGG: xom:XOO_1573 hypothetical protein; hypothetical protein 2824753..2825067 Stenotrophomonas maltophilia R551-3 6477018 YP_002028913.1 CDS Smal_2530 NC_011071.1 2825054 2825269 D PFAM: Prophage CP4-57 regulatory; KEGG: ecp:ECP_2020 putative regulatory protein; phage transcriptional regulator AlpA 2825054..2825269 Stenotrophomonas maltophilia R551-3 6477019 YP_002028914.1 CDS Smal_2531 NC_011071.1 2825548 2826618 D KEGG: ret:RHE_CH03886 hypothetical protein; hypothetical protein 2825548..2826618 Stenotrophomonas maltophilia R551-3 6477021 YP_002028915.1 CDS Smal_2532 NC_011071.1 2826700 2827692 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_2639 transcriptional regulator; LysR family transcriptional regulator complement(2826700..2827692) Stenotrophomonas maltophilia R551-3 6477022 YP_002028916.1 CDS Smal_2533 NC_011071.1 2827820 2828407 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: xac:XAC1654 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase (quinone) 2827820..2828407 Stenotrophomonas maltophilia R551-3 6477023 YP_002028917.1 CDS Smal_2534 NC_011071.1 2828639 2828995 D PFAM: Variant SH3 domain protein; KEGG: pen:PSEEN2253 hypothetical protein; Variant SH3 domain-containing protein 2828639..2828995 Stenotrophomonas maltophilia R551-3 6477024 YP_002028918.1 CDS Smal_2535 NC_011071.1 2829038 2830318 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2829038..2830318) Stenotrophomonas maltophilia R551-3 6477025 YP_002028919.1 CDS Smal_2536 NC_011071.1 2830432 2831070 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC1652 hypothetical protein; TonB family protein 2830432..2831070 Stenotrophomonas maltophilia R551-3 6477026 YP_002028920.1 CDS Smal_2537 NC_011071.1 2831190 2831762 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC1651 TonB-like protein; TonB family protein 2831190..2831762 Stenotrophomonas maltophilia R551-3 6477027 YP_002028921.1 CDS Smal_2538 NC_011071.1 2832055 2833362 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2832055..2833362) Stenotrophomonas maltophilia R551-3 6477028 YP_002028922.1 CDS Smal_2539 NC_011071.1 2833439 2834638 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: xcb:XC_2644 P-protein; chorismate mutase complement(2833439..2834638) Stenotrophomonas maltophilia R551-3 6477029 YP_002028923.1 CDS Smal_2540 NC_011071.1 2834690 2835775 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2834690..2835775) Stenotrophomonas maltophilia R551-3 6477030 YP_002028924.1 CDS Smal_2541 NC_011071.1 2835956 2836762 R PFAM: Forkhead-associated protein; KEGG: xcb:XC_2648 hypothetical protein; FHA domain-containing protein complement(2835956..2836762) Stenotrophomonas maltophilia R551-3 6477031 YP_002028925.1 CDS Smal_2542 NC_011071.1 2836888 2837163 D TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: xom:XOO_2272 hypothetical protein; polyhydroxyalkanoic acid system protein 2836888..2837163 Stenotrophomonas maltophilia R551-3 6477032 YP_002028926.1 CDS Smal_2543 NC_011071.1 2837244 2837735 D TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: xom:XOO_2273 poly(hydroxyalcanoate) granule associated protein; poly(hydroxyalkanoate) granule-associated protein 2837244..2837735 Stenotrophomonas maltophilia R551-3 6477033 YP_002028927.1 CDS Smal_2544 NC_011071.1 2837972 2838982 D KEGG: xcc:XCC1583 hypothetical protein; hypothetical protein 2837972..2838982 Stenotrophomonas maltophilia R551-3 6477034 YP_002028928.1 CDS Smal_2545 NC_011071.1 2839103 2839495 R PFAM: protein of unknown function UPF0150; KEGG: pna:Pnap_2645 protein of unknown function UPF0150; hypothetical protein complement(2839103..2839495) Stenotrophomonas maltophilia R551-3 6477035 YP_002028929.1 CDS Smal_2546 NC_011071.1 2839504 2839686 R PFAM: YcfA family protein; KEGG: gdi:GDI3800 hypothetical protein; hypothetical protein complement(2839504..2839686) Stenotrophomonas maltophilia R551-3 6477036 YP_002028930.1 CDS Smal_2547 NC_011071.1 2839760 2840488 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: xcv:XCV1682 transcriptional regulator, GntR family; transcriptional regulator, histidine utilization repressor, GntR family complement(2839760..2840488) Stenotrophomonas maltophilia R551-3 6477037 YP_002028931.1 CDS Smal_2548 NC_011071.1 2840517 2841887 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(2840517..2841887) Stenotrophomonas maltophilia R551-3 6477038 YP_002028932.1 CDS Smal_2549 NC_011071.1 2841955 2843178 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2841955..2843178 Stenotrophomonas maltophilia R551-3 6477039 YP_002028933.1 CDS Smal_2550 NC_011071.1 2843175 2844716 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2843175..2844716 Stenotrophomonas maltophilia R551-3 6477040 YP_002028934.1 CDS Smal_2551 NC_011071.1 2844713 2845567 D PFAM: N-formylglutamate amidohydrolase; KEGG: xcv:XCV1677 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 2844713..2845567 Stenotrophomonas maltophilia R551-3 6477041 YP_002028935.1 CDS Smal_2552 NC_011071.1 2845564 2847231 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2845564..2847231 Stenotrophomonas maltophilia R551-3 6477042 YP_002028936.1 CDS Smal_2553 NC_011071.1 2847420 2848856 D PFAM: beta-lactamase; KEGG: fjo:Fjoh_2768 beta-lactamase; beta-lactamase 2847420..2848856 Stenotrophomonas maltophilia R551-3 6477043 YP_002028937.1 CDS Smal_2554 NC_011071.1 2849188 2850153 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 2849188..2850153 Stenotrophomonas maltophilia R551-3 6477044 YP_002028938.1 CDS Smal_2555 NC_011071.1 2850274 2852382 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmy:Pmen_4581 TonB-dependent receptor; TonB-dependent receptor 2850274..2852382 Stenotrophomonas maltophilia R551-3 6477045 YP_002028939.1 CDS Smal_2556 NC_011071.1 2852429 2852956 R hypothetical protein complement(2852429..2852956) Stenotrophomonas maltophilia R551-3 6477046 YP_002028940.1 CDS Smal_2557 NC_011071.1 2853073 2853852 R KEGG: xcb:XC_1522 hypothetical protein; hypothetical protein complement(2853073..2853852) Stenotrophomonas maltophilia R551-3 6477047 YP_002028941.1 CDS Smal_2558 NC_011071.1 2854058 2854381 D hypothetical protein 2854058..2854381 Stenotrophomonas maltophilia R551-3 6477048 YP_002028942.1 CDS Smal_2559 NC_011071.1 2854416 2854991 R PFAM: regulatory protein TetR; KEGG: rso:RS01911 putative transcription regulator protein; TetR family transcriptional regulator complement(2854416..2854991) Stenotrophomonas maltophilia R551-3 6477049 YP_002028943.1 CDS Smal_2560 NC_011071.1 2855061 2855606 D KEGG: aeh:Mlg_2112 hypothetical protein; hypothetical protein 2855061..2855606 Stenotrophomonas maltophilia R551-3 6477050 YP_002028944.1 CDS Smal_2561 NC_011071.1 2855613 2856746 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pau:PA14_48450 putative peptidyl-arginine deiminase; Agmatine deiminase complement(2855613..2856746) Stenotrophomonas maltophilia R551-3 6477051 YP_002028945.1 CDS Smal_2562 NC_011071.1 2856852 2857736 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_48500 putative transcriptional regulator; LysR family transcriptional regulator 2856852..2857736 Stenotrophomonas maltophilia R551-3 6477052 YP_002028946.1 CDS Smal_2563 NC_011071.1 2857711 2858496 R PFAM: lipolytic protein G-D-S-L family; KEGG: sus:Acid_2072 lipolytic enzyme, G-D-S-L family; G-D-S-L family lipolytic protein complement(2857711..2858496) Stenotrophomonas maltophilia R551-3 6477053 YP_002028947.1 CDS Smal_2564 NC_011071.1 2858545 2859504 R KEGG: swi:Swit_2733 hypothetical protein; hypothetical protein complement(2858545..2859504) Stenotrophomonas maltophilia R551-3 6477054 YP_002028948.1 CDS Smal_2565 NC_011071.1 2859649 2860632 D KEGG: rba:RB9964 hypothetical protein-transmembrane prediction; hypothetical protein 2859649..2860632 Stenotrophomonas maltophilia R551-3 6477055 YP_002028949.1 CDS Smal_2566 NC_011071.1 2860643 2860963 R hypothetical protein complement(2860643..2860963) Stenotrophomonas maltophilia R551-3 6477056 YP_002028950.1 CDS Smal_2567 NC_011071.1 2861180 2863642 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: xfa:XF2551 hypothetical protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(2861180..2863642) Stenotrophomonas maltophilia R551-3 6477057 YP_002028951.1 CDS Smal_2568 NC_011071.1 2863810 2864139 R KEGG: cak:Caul_3766 hypothetical protein; hypothetical protein complement(2863810..2864139) Stenotrophomonas maltophilia R551-3 6477058 YP_002028952.1 CDS Smal_2569 NC_011071.1 2864601 2865218 D KEGG: xcb:XC_2289 hypothetical protein; hypothetical protein 2864601..2865218 Stenotrophomonas maltophilia R551-3 6477059 YP_002028953.1 CDS Smal_2570 NC_011071.1 2865231 2866649 D KEGG: xcb:XC_2288 hypothetical protein; hypothetical protein 2865231..2866649 Stenotrophomonas maltophilia R551-3 6477060 YP_002028954.1 CDS Smal_2571 NC_011071.1 2866709 2867485 D KEGG: gvi:gll2767 hypothetical protein; hypothetical protein 2866709..2867485 Stenotrophomonas maltophilia R551-3 6477061 YP_002028955.1 CDS Smal_2572 NC_011071.1 2867463 2867855 D KEGG: aav:Aave_1550 hypothetical protein; hypothetical protein 2867463..2867855 Stenotrophomonas maltophilia R551-3 6477062 YP_002028956.1 CDS Smal_2573 NC_011071.1 2867872 2869302 R PFAM: beta-lactamase; KEGG: eli:ELI_02300 beta-lactamase class C family protein; beta-lactamase complement(2867872..2869302) Stenotrophomonas maltophilia R551-3 6477063 YP_002028957.1 CDS Smal_2574 NC_011071.1 2869367 2869876 R KEGG: lil:LA3260 hypothetical protein; hypothetical protein complement(2869367..2869876) Stenotrophomonas maltophilia R551-3 6477064 YP_002028958.1 CDS Smal_2575 NC_011071.1 2869928 2870833 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS05458 probable transcription regulator protein; LysR family transcriptional regulator complement(2869928..2870833) Stenotrophomonas maltophilia R551-3 6477065 YP_002028959.1 CDS Smal_2576 NC_011071.1 2870953 2871942 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5639 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein 2870953..2871942 Stenotrophomonas maltophilia R551-3 6477066 YP_002028960.1 CDS Smal_2577 NC_011071.1 2871986 2874508 R TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: xcv:XCV1673 glucose dehydrogenase; membrane-bound PQQ-dependent dehydrogenase complement(2871986..2874508) Stenotrophomonas maltophilia R551-3 6477067 YP_002028961.1 CDS Smal_2578 NC_011071.1 2874640 2877354 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2874640..2877354) Stenotrophomonas maltophilia R551-3 6477068 YP_002028962.1 CDS mtnA NC_011071.1 2877574 2878638 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(2877574..2878638) Stenotrophomonas maltophilia R551-3 6477069 YP_002028963.1 CDS Smal_2580 NC_011071.1 2878686 2879417 R KEGG: xcb:XC_2662 hypothetical protein; hypothetical protein complement(2878686..2879417) Stenotrophomonas maltophilia R551-3 6477070 YP_002028964.1 CDS Smal_2581 NC_011071.1 2879558 2880514 R PFAM: tRNA synthetase class II (D K and N); KEGG: xcb:XC_2663 lysyl-tRNA synthetase; lysine--tRNA ligase complement(2879558..2880514) Stenotrophomonas maltophilia R551-3 6477071 YP_002028965.1 CDS Smal_2582 NC_011071.1 2880511 2880996 R PFAM: GCN5-related N-acetyltransferase; KEGG: xfn:XfasM23_2046 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2880511..2880996) Stenotrophomonas maltophilia R551-3 6477072 YP_002028966.1 CDS ligA NC_011071.1 2881047 2883512 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2881047..2883512) Stenotrophomonas maltophilia R551-3 6477073 YP_002028967.1 CDS Smal_2584 NC_011071.1 2883801 2884925 D PFAM: aminotransferase class I and II; KEGG: xcb:XC_2665 putative aminotransferase; putative aminotransferase 2883801..2884925 Stenotrophomonas maltophilia R551-3 6477074 YP_002028968.1 CDS Smal_2585 NC_011071.1 2885016 2885756 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2885016..2885756) Stenotrophomonas maltophilia R551-3 6477075 YP_002028969.1 CDS Smal_2586 NC_011071.1 2885803 2889306 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: xcv:XCV1664 chromosome segregation protein; chromosome segregation protein SMC complement(2885803..2889306) Stenotrophomonas maltophilia R551-3 6477076 YP_002028970.1 CDS rplI NC_011071.1 2889569 2890021 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2889569..2890021) Stenotrophomonas maltophilia R551-3 6477077 YP_002028971.1 CDS rpsR NC_011071.1 2890126 2890356 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2890126..2890356) Stenotrophomonas maltophilia R551-3 6477078 YP_002028972.1 CDS rpsF NC_011071.1 2890368 2890805 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2890368..2890805) Stenotrophomonas maltophilia R551-3 6477079 YP_002028973.1 CDS Smal_2590 NC_011071.1 2891035 2891577 R PFAM: protein of unknown function UPF0167; KEGG: dac:Daci_1537 hypothetical protein; hypothetical protein complement(2891035..2891577) Stenotrophomonas maltophilia R551-3 6477080 YP_002028974.1 CDS Smal_2591 NC_011071.1 2891671 2892009 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: xac:XAC1619 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(2891671..2892009) Stenotrophomonas maltophilia R551-3 6477081 YP_002028975.1 CDS asnC NC_011071.1 2892139 2893533 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2892139..2893533 Stenotrophomonas maltophilia R551-3 6477082 YP_002028976.1 CDS Smal_2593 NC_011071.1 2893567 2893866 D KEGG: xcv:XCV1658 hypothetical protein; hypothetical protein 2893567..2893866 Stenotrophomonas maltophilia R551-3 6477083 YP_002028977.1 CDS Smal_2594 NC_011071.1 2893874 2894188 D KEGG: xac:XAC1616 hypothetical protein; hypothetical protein 2893874..2894188 Stenotrophomonas maltophilia R551-3 6477084 YP_002028978.1 CDS Smal_2595 NC_011071.1 2894198 2894836 D PFAM: Negative transcriptional regulator; KEGG: xcb:XC_2677 transcriptional regulator protein Pai2; FMN-binding negative transcriptional regulator 2894198..2894836 Stenotrophomonas maltophilia R551-3 6477085 YP_002028979.1 CDS Smal_2596 NC_011071.1 2894910 2895572 D PFAM: carbonic anhydrase; KEGG: xac:XAC1604 carbonic anhydrase; carbonate dehydratase 2894910..2895572 Stenotrophomonas maltophilia R551-3 6477086 YP_002028980.1 CDS Smal_2597 NC_011071.1 2895594 2896115 D catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis; 3-hydroxyanthranilate 3,4-dioxygenase 2895594..2896115 Stenotrophomonas maltophilia R551-3 6477087 YP_002028981.1 CDS Smal_2598 NC_011071.1 2896257 2897531 D KEGG: xcv:XCV1642 putative kynureninase; TIGRFAM: kynureninase; PFAM: aminotransferase class V; kynureninase 2896257..2897531 Stenotrophomonas maltophilia R551-3 6477088 YP_002028982.1 CDS Smal_2599 NC_011071.1 2897563 2898930 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: xcb:XC_2682 kynurenine 3-monooxygenase; kynurenine 3-monooxygenase 2897563..2898930 Stenotrophomonas maltophilia R551-3 6477089 YP_002028983.1 CDS sbcB NC_011071.1 2898930 2900369 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2898930..2900369 Stenotrophomonas maltophilia R551-3 6477090 YP_002028984.1 CDS Smal_2601 NC_011071.1 2900366 2901052 D PFAM: conserved hypothetical protein; KEGG: xcb:XC_2684 hypothetical protein; hypothetical protein 2900366..2901052 Stenotrophomonas maltophilia R551-3 6477091 YP_002028985.1 CDS Smal_2602 NC_011071.1 2901108 2901659 D KEGG: xac:XAC1597 hypothetical protein; hypothetical protein 2901108..2901659 Stenotrophomonas maltophilia R551-3 6477092 YP_002028986.1 CDS Smal_2603 NC_011071.1 2901813 2902757 R PFAM: 5-nucleotidase; KEGG: xac:XAC1596 5'-nucleotidase; 5'-nucleotidase complement(2901813..2902757) Stenotrophomonas maltophilia R551-3 6477093 YP_002028987.1 CDS ppnK NC_011071.1 2902806 2903579 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(2902806..2903579) Stenotrophomonas maltophilia R551-3 6477094 YP_002028988.1 CDS Smal_2605 NC_011071.1 2903770 2908746 R PFAM: NAD-glutamate dehydrogenase; KEGG: xcv:XCV2674 NAD-specific glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(2903770..2908746) Stenotrophomonas maltophilia R551-3 6477095 YP_002028989.1 CDS Smal_2606 NC_011071.1 2908997 2909653 D PFAM: regulatory protein TetR; KEGG: xcv:XCV2675 transcriptional regulator, TetR family; TetR family transcriptional regulator 2908997..2909653 Stenotrophomonas maltophilia R551-3 6477096 YP_002028990.1 CDS Smal_2607 NC_011071.1 2909653 2910921 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcc:XCC2367 multidrug resistance protein; RND family efflux transporter MFP subunit 2909653..2910921 Stenotrophomonas maltophilia R551-3 6477097 YP_002028991.1 CDS Smal_2608 NC_011071.1 2910937 2914110 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xcb:XC_1747 multidrug-efflux transporter AcrB; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2910937..2914110 Stenotrophomonas maltophilia R551-3 6477098 YP_002028992.1 CDS Smal_2609 NC_011071.1 2914244 2915392 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC1562 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2914244..2915392) Stenotrophomonas maltophilia R551-3 6477099 YP_002028993.1 CDS Smal_2610 NC_011071.1 2915545 2916474 D PFAM: regulatory protein ArsR; methyltransferase small; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcv:XCV1604 putative transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2915545..2916474 Stenotrophomonas maltophilia R551-3 6477100 YP_002028994.1 CDS Smal_2611 NC_011071.1 2916488 2917579 D PFAM: homocysteine S-methyltransferase; KEGG: xcv:XCV1603 5-methyltetrahydrofolate-homocysteine methyltransferase (fragment); homocysteine S-methyltransferase 2916488..2917579 Stenotrophomonas maltophilia R551-3 6477101 YP_002028995.1 CDS Smal_2612 NC_011071.1 2917637 2920321 D KEGG: xac:XAC1559 5-methyltetrahydrofolate-homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; methionine synthase 2917637..2920321 Stenotrophomonas maltophilia R551-3 6477102 YP_002028996.1 CDS Smal_2613 NC_011071.1 2920400 2921590 D PFAM: major facilitator superfamily MFS_1; KEGG: hha:Hhal_1813 major facilitator superfamily MFS_1; major facilitator superfamily protein 2920400..2921590 Stenotrophomonas maltophilia R551-3 6477103 YP_002028997.1 CDS Smal_2614 NC_011071.1 2921636 2922322 R KEGG: xcb:XC_2731 hypothetical protein; hypothetical protein complement(2921636..2922322) Stenotrophomonas maltophilia R551-3 6477104 YP_002028998.1 CDS Smal_2615 NC_011071.1 2922333 2922572 R PFAM: SlyX family protein; KEGG: xom:XOO_1947 hypothetical protein; hypothetical protein complement(2922333..2922572) Stenotrophomonas maltophilia R551-3 6477105 YP_002028999.1 CDS Smal_2616 NC_011071.1 2922565 2923914 R KEGG: xcb:XC_2733 UDP-glucose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(2922565..2923914) Stenotrophomonas maltophilia R551-3 6477106 YP_002029000.1 CDS Smal_2617 NC_011071.1 2923938 2924915 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: xcv:XCV1593 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(2923938..2924915) Stenotrophomonas maltophilia R551-3 6477107 YP_002029001.1 CDS Smal_2618 NC_011071.1 2925012 2925599 R PFAM: glutathione peroxidase; KEGG: xcb:XC_2735 ABC transporter vitamin B12 uptake permease; glutathione peroxidase complement(2925012..2925599) Stenotrophomonas maltophilia R551-3 6477108 YP_002029002.1 CDS Smal_2619 NC_011071.1 2925969 2926205 D hypothetical protein 2925969..2926205 Stenotrophomonas maltophilia R551-3 6477109 YP_002029003.1 CDS Smal_2620 NC_011071.1 2926208 2926567 D PFAM: regulatory protein GntR HTH; KEGG: xac:XAC1548 transcriptional regulator GntR family; GntR family transcriptional regulator 2926208..2926567 Stenotrophomonas maltophilia R551-3 6477110 YP_002029004.1 CDS Smal_2621 NC_011071.1 2926567 2927457 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1547 ABC transporter ATP-binding protein; ABC transporter-like protein 2926567..2927457 Stenotrophomonas maltophilia R551-3 6477111 YP_002029005.1 CDS Smal_2622 NC_011071.1 2927454 2928476 D KEGG: xcb:XC_2738 hypothetical protein; hypothetical protein 2927454..2928476 Stenotrophomonas maltophilia R551-3 6477112 YP_002029006.1 CDS Smal_2623 NC_011071.1 2928502 2929389 D KEGG: xcv:XCV1588 putative secreted protein; hypothetical protein 2928502..2929389 Stenotrophomonas maltophilia R551-3 6477113 YP_002029007.1 CDS Smal_2624 NC_011071.1 2929420 2930037 D KEGG: xcv:XCV1587 putative secreted protein; hypothetical protein 2929420..2930037 Stenotrophomonas maltophilia R551-3 6477114 YP_002029008.1 CDS Smal_2625 NC_011071.1 2930110 2930568 D KEGG: xcb:XC_2741 hypothetical protein; hypothetical protein 2930110..2930568 Stenotrophomonas maltophilia R551-3 6477115 YP_002029009.1 CDS fumC NC_011071.1 2930696 2932123 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2930696..2932123) Stenotrophomonas maltophilia R551-3 6477116 YP_002029010.1 CDS Smal_2627 NC_011071.1 2932413 2933780 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2932413..2933780 Stenotrophomonas maltophilia R551-3 6477117 YP_002029011.1 CDS Smal_2628 NC_011071.1 2934503 2935918 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: xoo:XOO2046 hypothetical protein; cupin 2934503..2935918 Stenotrophomonas maltophilia R551-3 6477118 YP_002029012.1 CDS Smal_2629 NC_011071.1 2935928 2936824 D PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV1579 hypothetical protein; N-acetyltransferase GCN5 2935928..2936824 Stenotrophomonas maltophilia R551-3 6477119 YP_002029013.1 CDS sucA NC_011071.1 2937011 2939842 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2937011..2939842 Stenotrophomonas maltophilia R551-3 6477120 YP_002029014.1 CDS Smal_2631 NC_011071.1 2939882 2941084 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 2939882..2941084 Stenotrophomonas maltophilia R551-3 6477121 YP_002029015.1 CDS Smal_2632 NC_011071.1 2941148 2942584 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2941148..2942584 Stenotrophomonas maltophilia R551-3 6477122 YP_002029016.1 CDS Smal_2633 NC_011071.1 2942733 2942981 R hypothetical protein complement(2942733..2942981) Stenotrophomonas maltophilia R551-3 6477123 YP_002029017.1 CDS Smal_2634 NC_011071.1 2942978 2943190 R KEGG: ote:Oter_1333 hypothetical protein; hypothetical protein complement(2942978..2943190) Stenotrophomonas maltophilia R551-3 6477124 YP_002029018.1 CDS Smal_2635 NC_011071.1 2943359 2944948 R KEGG: gvi:gll0490 phosphodiesterase/alkaline phosphatase D; alkaline phosphatase complement(2943359..2944948) Stenotrophomonas maltophilia R551-3 6477125 YP_002029019.1 CDS Smal_2636 NC_011071.1 2944948 2947191 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC4368 TonB-dependent receptor; TonB-dependent receptor complement(2944948..2947191) Stenotrophomonas maltophilia R551-3 6477126 YP_002029020.1 CDS Smal_2637 NC_011071.1 2947359 2948789 R unwinds double stranded DNA; replicative DNA helicase complement(2947359..2948789) Stenotrophomonas maltophilia R551-3 6477127 YP_002029021.1 CDS Smal_2638 NC_011071.1 2949135 2949695 R PFAM: NADPH-dependent FMN reductase; KEGG: xac:XAC1476 hypothetical protein; NADPH-dependent FMN reductase complement(2949135..2949695) Stenotrophomonas maltophilia R551-3 6477128 YP_002029022.1 CDS Smal_2639 NC_011071.1 2949762 2951705 R KEGG: xcv:XCV1533 asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase complement(2949762..2951705) Stenotrophomonas maltophilia R551-3 6477129 YP_002029023.1 CDS Smal_2640 NC_011071.1 2951709 2953988 R PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: rha:RHA1_ro03301 probable pyruvate dehydrogenase (acetyl-transferring) beta subunit; transketolase domain-containing protein complement(2951709..2953988) Stenotrophomonas maltophilia R551-3 6477130 YP_002029024.1 CDS Smal_2641 NC_011071.1 2954066 2954722 R PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV1532 glutathione transferase; glutathione S-transferase domain-containing protein complement(2954066..2954722) Stenotrophomonas maltophilia R551-3 6477131 YP_002029025.1 CDS Smal_2642 NC_011071.1 2954896 2955438 R PFAM: GCN5-related N-acetyltransferase; KEGG: hne:HNE_3215 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2954896..2955438) Stenotrophomonas maltophilia R551-3 6477132 YP_002029026.1 CDS Smal_2643 NC_011071.1 2955570 2956412 R PFAM: 17 kDa surface antigen; KEGG: xcb:XC_2810 hypothetical protein; 17 kDa surface antigen complement(2955570..2956412) Stenotrophomonas maltophilia R551-3 6477133 YP_002029027.1 CDS Smal_2644 NC_011071.1 2956575 2956793 D KEGG: xcb:XC_2811 hypothetical protein; hypothetical protein 2956575..2956793 Stenotrophomonas maltophilia R551-3 6477134 YP_002029028.1 CDS Smal_2645 NC_011071.1 2956790 2957560 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: xcv:XCV1526 putative TatD related DNase; TatD family hydrolase 2956790..2957560 Stenotrophomonas maltophilia R551-3 6477135 YP_002029029.1 CDS Smal_2646 NC_011071.1 2957639 2958466 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: xcb:XC_2813 molybdopterin biosynthesis protein; UBA/THIF-type NAD/FAD binding protein complement(2957639..2958466) Stenotrophomonas maltophilia R551-3 6477136 YP_002029030.1 CDS Smal_2647 NC_011071.1 2958544 2958978 D KEGG: xcv:XCV1524 hypothetical protein; hypothetical protein 2958544..2958978 Stenotrophomonas maltophilia R551-3 6477137 YP_002029031.1 CDS Smal_2648 NC_011071.1 2959115 2959609 D PFAM: 17 kDa surface antigen; KEGG: xcb:XC_2815 peptidoglycan-associated outer membrane lipoprotein; 17 kDa surface antigen 2959115..2959609 Stenotrophomonas maltophilia R551-3 6477138 YP_002029032.1 CDS Smal_2649 NC_011071.1 2959697 2959906 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xac:XAC1465 major cold shock protein; cold-shock DNA-binding domain-containing protein complement(2959697..2959906) Stenotrophomonas maltophilia R551-3 6477139 YP_002029033.1 CDS Smal_2650 NC_011071.1 2960142 2960627 D PFAM: protein of unknown function DUF456; KEGG: xcb:XC_2817 hypothetical protein; hypothetical protein 2960142..2960627 Stenotrophomonas maltophilia R551-3 6477140 YP_002029034.1 CDS Smal_2651 NC_011071.1 2960747 2961901 D PFAM: phospholipase A1; KEGG: xcb:XC_2818 phospholipase; phospholipase A(1) 2960747..2961901 Stenotrophomonas maltophilia R551-3 6477141 YP_002029035.1 CDS Smal_2652 NC_011071.1 2961901 2962242 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: dac:Daci_1593 arsenate reductase; arsenate reductase 2961901..2962242 Stenotrophomonas maltophilia R551-3 6477142 YP_002029036.1 CDS Smal_2653 NC_011071.1 2962314 2962949 R PFAM: Glutathione S-transferase domain; KEGG: xcv:XCV1518 glutathione transferase; glutathione S-transferase domain-containing protein complement(2962314..2962949) Stenotrophomonas maltophilia R551-3 6477143 YP_002029037.1 CDS Smal_2654 NC_011071.1 2963008 2963343 R hypothetical protein complement(2963008..2963343) Stenotrophomonas maltophilia R551-3 6477144 YP_002029038.1 CDS Smal_2655 NC_011071.1 2963464 2964981 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: xcv:XCV1517 putative fumarate hydratase; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(2963464..2964981) Stenotrophomonas maltophilia R551-3 6477145 YP_002029039.1 CDS Smal_2656 NC_011071.1 2965161 2966057 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 subunit 2965161..2966057 Stenotrophomonas maltophilia R551-3 6477146 YP_002029040.1 CDS Smal_2657 NC_011071.1 2966094 2966543 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein; alkylhydroperoxidase-like protein 2966094..2966543 Stenotrophomonas maltophilia R551-3 6477147 YP_002029041.1 CDS Smal_2658 NC_011071.1 2966786 2968657 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1459 ABC transporter ATP-binding protein; ABC transporter-like protein 2966786..2968657 Stenotrophomonas maltophilia R551-3 6477148 YP_002029042.1 CDS Smal_2659 NC_011071.1 2968737 2969516 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: xcb:XC_2824 ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2968737..2969516 Stenotrophomonas maltophilia R551-3 6477149 YP_002029043.1 CDS Smal_2660 NC_011071.1 2969595 2970074 R PFAM: glutathione peroxidase; KEGG: xcb:XC_2825 glutathione peroxidase-like protein; glutathione peroxidase complement(2969595..2970074) Stenotrophomonas maltophilia R551-3 6477150 YP_002029044.1 CDS Smal_2661 NC_011071.1 2970235 2972373 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xac:XAC1456 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 2970235..2972373 Stenotrophomonas maltophilia R551-3 6477151 YP_002029045.1 CDS Smal_2662 NC_011071.1 2972465 2973580 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(2972465..2973580) Stenotrophomonas maltophilia R551-3 6477152 YP_002029046.1 CDS Smal_2663 NC_011071.1 2973600 2974481 R KEGG: xcb:XC_2828 hypothetical protein; hypothetical protein complement(2973600..2974481) Stenotrophomonas maltophilia R551-3 6477153 YP_002029047.1 CDS Smal_2664 NC_011071.1 2974519 2974821 R KEGG: bbr:BB3384 hypothetical protein; hypothetical protein complement(2974519..2974821) Stenotrophomonas maltophilia R551-3 6477154 YP_002029048.1 CDS Smal_2665 NC_011071.1 2975031 2975192 D KEGG: xom:XOO_2230 hypothetical protein; hypothetical protein 2975031..2975192 Stenotrophomonas maltophilia R551-3 6477155 YP_002029049.1 CDS Smal_2666 NC_011071.1 2975248 2975874 R PFAM: Rhomboid family protein; KEGG: xcb:XC_2831 hypothetical protein; rhomboid family protein complement(2975248..2975874) Stenotrophomonas maltophilia R551-3 6477156 YP_002029050.1 CDS Smal_2667 NC_011071.1 2975882 2977447 R PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: xcv:XCV1507 proton-dependent oligopeptide transporter family protein; TGF-beta receptor type I/II extracellular region complement(2975882..2977447) Stenotrophomonas maltophilia R551-3 6477157 YP_002029051.1 CDS Smal_2668 NC_011071.1 2977610 2978446 D KEGG: xcb:XC_1916 hypothetical protein; hypothetical protein 2977610..2978446 Stenotrophomonas maltophilia R551-3 6477158 YP_002029052.1 CDS Smal_2669 NC_011071.1 2978611 2979222 R PFAM: manganese and iron superoxide dismutase; KEGG: xcb:XC_1837 superoxide dismutase; Superoxide dismutase complement(2978611..2979222) Stenotrophomonas maltophilia R551-3 6477159 YP_002029053.1 CDS Smal_2670 NC_011071.1 2979442 2979891 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: xcb:XC_1836 ribonuclease; guanine-specific ribonuclease N1 and T1 2979442..2979891 Stenotrophomonas maltophilia R551-3 6477160 YP_002029054.1 CDS Smal_2671 NC_011071.1 2979891 2980304 D KEGG: xac:XAC2388 hypothetical protein; hypothetical protein 2979891..2980304 Stenotrophomonas maltophilia R551-3 6477161 YP_002029055.1 CDS Smal_2672 NC_011071.1 2980448 2982214 R KEGG: xcv:XCV2430 hypothetical protein; hypothetical protein complement(2980448..2982214) Stenotrophomonas maltophilia R551-3 6477162 YP_002029056.1 CDS Smal_2673 NC_011071.1 2982225 2982824 R PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: xac:XAC2117 hypothetical protein; HesB/YadR/YfhF-family protein complement(2982225..2982824) Stenotrophomonas maltophilia R551-3 6477163 YP_002029057.1 CDS phhB NC_011071.1 2982915 2983265 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 2982915..2983265 Stenotrophomonas maltophilia R551-3 6477164 YP_002029058.1 CDS Smal_2675 NC_011071.1 2983262 2983678 D TIGRFAM: TonB family protein; KEGG: xcv:XCV2427 putative secreted protein; TonB family protein 2983262..2983678 Stenotrophomonas maltophilia R551-3 6477165 YP_002029059.1 CDS Smal_2676 NC_011071.1 2983776 2984585 D PFAM: zinc/iron permease; KEGG: xcb:XC_2100 zinc transporter ZupT; zinc transporter ZupT 2983776..2984585 Stenotrophomonas maltophilia R551-3 6477166 YP_002029060.1 CDS Smal_2677 NC_011071.1 2984677 2985651 R KEGG: xcb:XC_2099 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(2984677..2985651) Stenotrophomonas maltophilia R551-3 6477167 YP_002029061.1 CDS Smal_2678 NC_011071.1 2986059 2989334 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: xcb:XC_2098 ribonuclease E; ribonuclease, Rne/Rng family 2986059..2989334 Stenotrophomonas maltophilia R551-3 6477168 YP_002029062.1 CDS Smal_2679 NC_011071.1 2989477 2990370 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC2306 hypothetical protein; endonuclease/exonuclease/phosphatase complement(2989477..2990370) Stenotrophomonas maltophilia R551-3 6477169 YP_002029063.1 CDS Smal_2680 NC_011071.1 2990373 2993540 R PFAM: coagulation factor 5/8 type domain protein; KEGG: xcv:XCV2505 putative secreted protein; coagulation factor 5/8 type domain-containing protein complement(2990373..2993540) Stenotrophomonas maltophilia R551-3 6477170 YP_002029064.1 CDS Smal_2681 NC_011071.1 2993537 2994373 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xac:XAC2308 ABC transporter sugar permease; monosaccharide-transporting ATPase complement(2993537..2994373) Stenotrophomonas maltophilia R551-3 6477171 YP_002029065.1 CDS Smal_2682 NC_011071.1 2994370 2995251 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xom:XOO_2039 ABC transporter sugar permease; binding-protein-dependent transport system inner membrane protein complement(2994370..2995251) Stenotrophomonas maltophilia R551-3 6477172 YP_002029066.1 CDS Smal_2683 NC_011071.1 2995248 2996588 R PFAM: extracellular solute-binding protein family 1; KEGG: xcb:XC_1912 ABC transporter sugar binding protein; family 1 extracellular solute-binding protein complement(2995248..2996588) Stenotrophomonas maltophilia R551-3 6477173 YP_002029067.1 CDS Smal_2684 NC_011071.1 2996593 2998197 R KEGG: xcv:XCV2509 putative secreted protein; hypothetical protein complement(2996593..2998197) Stenotrophomonas maltophilia R551-3 6477174 YP_002029068.1 CDS Smal_2685 NC_011071.1 2998450 3001530 R PFAM: TonB-dependent receptor; KEGG: xac:XAC4274 OmpA-related protein; TonB-dependent receptor complement(2998450..3001530) Stenotrophomonas maltophilia R551-3 6477175 YP_002029069.1 CDS Smal_2686 NC_011071.1 3001608 3002630 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xcv:XCV2511 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(3001608..3002630) Stenotrophomonas maltophilia R551-3 6477176 YP_002029070.1 CDS Smal_2687 NC_011071.1 3002794 3003069 R PFAM: BolA family protein; KEGG: xcb:XC_1908 hypothetical protein; BolA family protein complement(3002794..3003069) Stenotrophomonas maltophilia R551-3 6477177 YP_002029071.1 CDS Smal_2688 NC_011071.1 3003066 3003365 R PFAM: YCII-related; KEGG: xac:XAC2315 YciI-like protein; hypothetical protein complement(3003066..3003365) Stenotrophomonas maltophilia R551-3 6477178 YP_002029072.1 CDS Smal_2689 NC_011071.1 3003727 3004632 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: xcb:XC_1906 hypothetical protein; chromosome segregation and condensation protein ScpA 3003727..3004632 Stenotrophomonas maltophilia R551-3 6477179 YP_002029073.1 CDS Smal_2690 NC_011071.1 3004646 3005521 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: xom:XOO_2031 hypothetical protein; segregation and condensation protein B 3004646..3005521 Stenotrophomonas maltophilia R551-3 6477180 YP_002029074.1 CDS Smal_2691 NC_011071.1 3005514 3007163 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: xac:XAC2318 pseudouridylate synthase; RNA-binding S4 domain-containing protein 3005514..3007163 Stenotrophomonas maltophilia R551-3 6477181 YP_002029075.1 CDS Smal_2692 NC_011071.1 3007280 3008080 R PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_4070 transcriptional regulator, AraC family; AraC protein arabinose-binding/dimerisation complement(3007280..3008080) Stenotrophomonas maltophilia R551-3 6477182 YP_002029076.1 CDS Smal_2693 NC_011071.1 3008159 3009313 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4069 multidrug resistance protein D; major facilitator superfamily protein 3008159..3009313 Stenotrophomonas maltophilia R551-3 6477183 YP_002029077.1 CDS Smal_2694 NC_011071.1 3009392 3009799 R hypothetical protein complement(3009392..3009799) Stenotrophomonas maltophilia R551-3 6477184 YP_002029078.1 CDS Smal_2695 NC_011071.1 3010153 3010446 D hypothetical protein 3010153..3010446 Stenotrophomonas maltophilia R551-3 6477185 YP_002029079.1 CDS Smal_2696 NC_011071.1 3010433 3010867 R KEGG: xcb:XC_1903 hypothetical protein; hypothetical protein complement(3010433..3010867) Stenotrophomonas maltophilia R551-3 6477186 YP_002029080.1 CDS Smal_2697 NC_011071.1 3010969 3011775 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xcv:XCV2520 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(3010969..3011775) Stenotrophomonas maltophilia R551-3 6477187 YP_002029081.1 CDS Smal_2698 NC_011071.1 3011789 3012937 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(3011789..3012937) Stenotrophomonas maltophilia R551-3 6477188 YP_002029082.1 CDS Smal_2699 NC_011071.1 3013124 3013753 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3013124..3013753 Stenotrophomonas maltophilia R551-3 6477189 YP_002029083.1 CDS Smal_2700 NC_011071.1 3013750 3014445 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: xcb:XC_1897 ABC transporter heme permease; heme exporter protein CcmB 3013750..3014445 Stenotrophomonas maltophilia R551-3 6477190 YP_002029084.1 CDS Smal_2701 NC_011071.1 3014489 3015259 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: xac:XAC2325 ABC transporter heme permease; heme exporter protein CcmC 3014489..3015259 Stenotrophomonas maltophilia R551-3 6477191 YP_002029085.1 CDS Smal_2702 NC_011071.1 3015256 3015444 D TIGRFAM: heme exporter protein CcmD; KEGG: xcv:XCV2525 heme exporter protein D (c-type cytochrome biogenesis protein CcmD); heme exporter protein CcmD 3015256..3015444 Stenotrophomonas maltophilia R551-3 6477192 YP_002029086.1 CDS Smal_2703 NC_011071.1 3015441 3015902 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3015441..3015902 Stenotrophomonas maltophilia R551-3 6477193 YP_002029087.1 CDS Smal_2704 NC_011071.1 3015903 3017822 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: xcb:XC_1893 C-type cytochrome biogenesis membrane protein; cytochrome c-type biogenesis protein CcmF 3015903..3017822 Stenotrophomonas maltophilia R551-3 6477194 YP_002029088.1 CDS Smal_2705 NC_011071.1 3017831 3018448 D TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_1892 C-type cytochrome biogenesis protein/thioredoxin DsbE; protein thiol/disulfide oxidoreductase DsbE 3017831..3018448 Stenotrophomonas maltophilia R551-3 6477195 YP_002029089.1 CDS Smal_2706 NC_011071.1 3018453 3018902 D PFAM: cytochrome C biogenesis protein; KEGG: xac:XAC2330 C-type cytochrome biogenesis protein; cytochrome C biogenesis protein 3018453..3018902 Stenotrophomonas maltophilia R551-3 6477196 YP_002029090.1 CDS Smal_2707 NC_011071.1 3018899 3019885 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xac:XAC2331 C-type cytochrome biogenesis protein; hypothetical protein 3018899..3019885 Stenotrophomonas maltophilia R551-3 6477197 YP_002029091.1 CDS metX NC_011071.1 3020048 3021160 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 3020048..3021160 Stenotrophomonas maltophilia R551-3 6477198 YP_002029092.1 CDS Smal_2709 NC_011071.1 3021215 3021505 D PFAM: protein of unknown function DUF1294; KEGG: xcv:XCV2532 hypothetical protein; hypothetical protein 3021215..3021505 Stenotrophomonas maltophilia R551-3 6477199 YP_002029093.1 CDS Smal_2710 NC_011071.1 3021597 3023270 R KEGG: xcv:XCV2533 ABC transporter permease and ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC complement(3021597..3023270) Stenotrophomonas maltophilia R551-3 6477200 YP_002029094.1 CDS Smal_2711 NC_011071.1 3023267 3025012 R KEGG: xcv:XCV2534 ABC transporter permease and ATP-binding protein; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydD complement(3023267..3025012) Stenotrophomonas maltophilia R551-3 6477201 YP_002029095.1 CDS Smal_2712 NC_011071.1 3025241 3026824 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: xcb:XC_1885 cytochrome d ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 3025241..3026824 Stenotrophomonas maltophilia R551-3 6477202 YP_002029096.1 CDS Smal_2713 NC_011071.1 3026840 3027994 D KEGG: xcb:XC_1884 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3026840..3027994 Stenotrophomonas maltophilia R551-3 6477203 YP_002029097.1 CDS Smal_2714 NC_011071.1 3028049 3028165 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: xom:XOO_2508 hypothetical protein; cyd operon protein YbgT 3028049..3028165 Stenotrophomonas maltophilia R551-3 6477204 YP_002029098.1 CDS Smal_2715 NC_011071.1 3028717 3029922 D PFAM: major facilitator superfamily MFS_1; KEGG: xom:XOO_2509 MFS transporter; major facilitator superfamily protein 3028717..3029922 Stenotrophomonas maltophilia R551-3 6477207 YP_002029099.1 CDS Smal_2716 NC_011071.1 3030265 3032292 D KEGG: xom:XOO_3691 HmsH protein; HmsH protein 3030265..3032292 Stenotrophomonas maltophilia R551-3 6477208 YP_002029100.1 CDS Smal_2717 NC_011071.1 3032294 3034180 D PFAM: polysaccharide deacetylase; KEGG: xom:XOO_3692 HmsF protein; polysaccharide deacetylase 3032294..3034180 Stenotrophomonas maltophilia R551-3 6477209 YP_002029101.1 CDS Smal_2718 NC_011071.1 3034182 3035438 D predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 3034182..3035438 Stenotrophomonas maltophilia R551-3 6477210 YP_002029102.1 CDS Smal_2719 NC_011071.1 3035435 3035905 D KEGG: xom:XOO_3694 hypothetical protein; hypothetical protein 3035435..3035905 Stenotrophomonas maltophilia R551-3 6477211 YP_002029103.1 CDS proA NC_011071.1 3035945 3037216 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3035945..3037216) Stenotrophomonas maltophilia R551-3 6477212 YP_002029104.1 CDS Smal_2721 NC_011071.1 3037213 3038370 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3037213..3038370) Stenotrophomonas maltophilia R551-3 6477213 YP_002029105.1 CDS Smal_2722 NC_011071.1 3038381 3038644 R PFAM: YCII-related; KEGG: xcv:XCV2543 hypothetical protein; hypothetical protein complement(3038381..3038644) Stenotrophomonas maltophilia R551-3 6477214 YP_002029106.1 CDS Smal_2723 NC_011071.1 3038644 3039939 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(3038644..3039939) Stenotrophomonas maltophilia R551-3 6477215 YP_002029107.1 CDS argC NC_011071.1 3039960 3040913 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(3039960..3040913) Stenotrophomonas maltophilia R551-3 6477216 YP_002029108.1 CDS Smal_2725 NC_011071.1 3040910 3041509 R KEGG: xcb:XC_1874 amino-acid acetyltransferase; amino-acid acetyltransferase complement(3040910..3041509) Stenotrophomonas maltophilia R551-3 6477217 YP_002029109.1 CDS Smal_2726 NC_011071.1 3041514 3042842 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(3041514..3042842) Stenotrophomonas maltophilia R551-3 6477218 YP_002029110.1 CDS Smal_2727 NC_011071.1 3042918 3044006 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3042918..3044006) Stenotrophomonas maltophilia R551-3 6477219 YP_002029111.1 CDS Smal_2728 NC_011071.1 3044139 3045332 R catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate; argininosuccinate synthase complement(3044139..3045332) Stenotrophomonas maltophilia R551-3 6477220 YP_002029112.1 CDS Smal_2729 NC_011071.1 3045401 3046411 R catalyzes the conversion of N-acetylornithine to N-acetylcitrulline in an alternative arginine biosynthesis pathway; N-acetylornithine carbamoyltransferase complement(3045401..3046411) Stenotrophomonas maltophilia R551-3 6477221 YP_002029113.1 CDS Smal_2730 NC_011071.1 3046731 3047300 R KEGG: xcv:XCV2552 hypothetical protein; hypothetical protein complement(3046731..3047300) Stenotrophomonas maltophilia R551-3 6477222 YP_002029114.1 CDS cysS NC_011071.1 3047489 3048865 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3047489..3048865 Stenotrophomonas maltophilia R551-3 6477223 YP_002029115.1 CDS Smal_2732 NC_011071.1 3048920 3049372 D PFAM: Fe-S metabolism associated SufE; KEGG: xac:XAC2355 hypothetical protein; Fe-S metabolism associated SufE 3048920..3049372 Stenotrophomonas maltophilia R551-3 6477224 YP_002029116.1 CDS Smal_2733 NC_011071.1 3049369 3050616 D PFAM: major facilitator superfamily MFS_1; KEGG: xac:XAC2356 drug:proton antiporter; major facilitator superfamily protein 3049369..3050616 Stenotrophomonas maltophilia R551-3 6477225 YP_002029117.1 CDS Smal_2734 NC_011071.1 3051008 3052225 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: xac:XAC2358 DnaK supressor; TraR/DksA family transcriptional regulator complement(3051008..3052225) Stenotrophomonas maltophilia R551-3 6477226 YP_002029118.1 CDS Smal_2735 NC_011071.1 3052498 3052752 D PFAM: protein of unknown function DUF37; KEGG: xcb:XC_1859 hypothetical protein; hypothetical protein 3052498..3052752 Stenotrophomonas maltophilia R551-3 6477227 YP_002029119.1 CDS Smal_2736 NC_011071.1 3052754 3054100 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 3052754..3054100 Stenotrophomonas maltophilia R551-3 6477228 YP_002029120.1 CDS Smal_2737 NC_011071.1 3054100 3054945 D PFAM: Peptidase M23; KEGG: xcc:XCC2258 peptidase; peptidase M23 3054100..3054945 Stenotrophomonas maltophilia R551-3 6477229 YP_002029121.1 CDS Smal_2738 NC_011071.1 3054992 3055696 R KEGG: xac:XAC2375 hypothetical protein; hypothetical protein complement(3054992..3055696) Stenotrophomonas maltophilia R551-3 6477230 YP_002029122.1 CDS Smal_2739 NC_011071.1 3055708 3056403 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3055708..3056403) Stenotrophomonas maltophilia R551-3 6477231 YP_002029123.1 CDS Smal_2740 NC_011071.1 3056400 3057116 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(3056400..3057116) Stenotrophomonas maltophilia R551-3 6477232 YP_002029124.1 CDS Smal_2741 NC_011071.1 3057140 3058483 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase complement(3057140..3058483) Stenotrophomonas maltophilia R551-3 6477233 YP_002029125.1 CDS Smal_2742 NC_011071.1 3058642 3059208 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(3058642..3059208) Stenotrophomonas maltophilia R551-3 6477234 YP_002029126.1 CDS Smal_2743 NC_011071.1 3059306 3060346 D KEGG: xcb:XC_1842 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 3059306..3060346 Stenotrophomonas maltophilia R551-3 6477235 YP_002029127.1 CDS Smal_2744 NC_011071.1 3060420 3062546 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: xac:XAC2382 GGDEF family protein; diguanylate cyclase/phosphodiesterase complement(3060420..3062546) Stenotrophomonas maltophilia R551-3 6477236 YP_002029128.1 CDS Smal_2745 NC_011071.1 3062543 3063445 R KEGG: xom:XOO_2554 phosphate-binding protein; phosphate-binding protein complement(3062543..3063445) Stenotrophomonas maltophilia R551-3 6477237 YP_002029129.1 CDS Smal_2746 NC_011071.1 3063522 3064292 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: xac:XAC2384 tRNA/rRNA methyltransferase; TrmH family, group 1 RNA methyltransferase complement(3063522..3064292) Stenotrophomonas maltophilia R551-3 6477238 YP_002029130.1 CDS Smal_2747 NC_011071.1 3064413 3065240 D PFAM: inositol monophosphatase; KEGG: xac:XAC2385 extragenic supressor protein SuhB; inositol-phosphate phosphatase 3064413..3065240 Stenotrophomonas maltophilia R551-3 6477239 YP_002029131.1 CDS Smal_2748 NC_011071.1 3065500 3066366 R putative metalloprotease; heat shock protein HtpX complement(3065500..3066366) Stenotrophomonas maltophilia R551-3 6477240 YP_002029132.1 CDS Smal_2749 NC_011071.1 3066460 3067380 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: xcb:XC_1822 aminoacyl-tRNA synthetase: glutamyl-like protein; glutamate--tRNA ligase 3066460..3067380 Stenotrophomonas maltophilia R551-3 6477241 YP_002029133.1 CDS Smal_2750 NC_011071.1 3067398 3068138 D TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: xcb:XC_1821 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase 3067398..3068138 Stenotrophomonas maltophilia R551-3 6477242 YP_002029134.1 CDS Smal_2751 NC_011071.1 3068323 3068868 D TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: xcb:XC_1820 hypothetical protein; polyhydroxyalkonate synthesis repressor PhaR 3068323..3068868 Stenotrophomonas maltophilia R551-3 6477243 YP_002029135.1 CDS Smal_2752 NC_011071.1 3068944 3069900 R PFAM: GumN family protein; KEGG: xcv:XCV2600 putative secreted protein; GumN family protein complement(3068944..3069900) Stenotrophomonas maltophilia R551-3 6477244 YP_002029136.1 CDS Smal_2753 NC_011071.1 3069902 3070831 R PFAM: protein of unknown function DUF1684; KEGG: xcv:XCV2601 hypothetical protein; hypothetical protein complement(3069902..3070831) Stenotrophomonas maltophilia R551-3 6477245 YP_002029137.1 CDS mutL NC_011071.1 3070843 3072747 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3070843..3072747) Stenotrophomonas maltophilia R551-3 6477246 YP_002029138.1 CDS Smal_2755 NC_011071.1 3072892 3074457 R PFAM: cell wall hydrolase/autolysin; KEGG: xac:XAC2406 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3072892..3074457) Stenotrophomonas maltophilia R551-3 6477247 YP_002029139.1 CDS Smal_2756 NC_011071.1 3074540 3075022 R PFAM: protein of unknown function UPF0079; KEGG: xcv:XCV2604 hypothetical protein; hypothetical protein complement(3074540..3075022) Stenotrophomonas maltophilia R551-3 6477248 YP_002029140.1 CDS Smal_2757 NC_011071.1 3075019 3076503 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: xcv:XCV2605 hypothetical protein; carbohydrate kinase complement(3075019..3076503) Stenotrophomonas maltophilia R551-3 6477249 YP_002029141.1 CDS Smal_2758 NC_011071.1 3076527 3077597 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: xcb:XC_1813 iron-sulfur cluster-binding protein; iron-sulfur cluster binding protein 3076527..3077597 Stenotrophomonas maltophilia R551-3 6477250 YP_002029142.1 CDS xseA NC_011071.1 3077642 3078973 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3077642..3078973 Stenotrophomonas maltophilia R551-3 6477251 YP_002029143.1 CDS Smal_2760 NC_011071.1 3079512 3080408 R PFAM: peptidase M48 Ste24p; KEGG: gfo:GFO_1860 membrane or secreted peptidase, family M48; peptidase M48 Ste24p complement(3079512..3080408) Stenotrophomonas maltophilia R551-3 6477252 YP_002029144.1 CDS Smal_2761 NC_011071.1 3080497 3082383 R PFAM: protein of unknown function DUF323; KEGG: xcv:XCV2610 hypothetical protein; hypothetical protein complement(3080497..3082383) Stenotrophomonas maltophilia R551-3 6477253 YP_002029145.1 CDS Smal_2762 NC_011071.1 3082468 3083544 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: xcb:XC_1809 ribonuclease D; ribonuclease D 3082468..3083544 Stenotrophomonas maltophilia R551-3 6477254 YP_002029146.1 CDS Smal_2763 NC_011071.1 3083646 3084473 D hypothetical protein 3083646..3084473 Stenotrophomonas maltophilia R551-3 6477255 YP_002029147.1 CDS Smal_2764 NC_011071.1 3084563 3086893 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV1326 TonB-dependent outer membrane receptor; TonB-dependent receptor complement(3084563..3086893) Stenotrophomonas maltophilia R551-3 6477256 YP_002029148.1 CDS Smal_2765 NC_011071.1 3087047 3087637 R PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B3093 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3087047..3087637) Stenotrophomonas maltophilia R551-3 6477257 YP_002029149.1 CDS Smal_2766 NC_011071.1 3087739 3088794 D PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_B3092 xylose isomerase-like TIM barrel; Xylose isomerase domain-containing protein 3087739..3088794 Stenotrophomonas maltophilia R551-3 6477258 YP_002029150.1 CDS Smal_2767 NC_011071.1 3088815 3089708 D PFAM: alpha/beta hydrolase fold; KEGG: dac:Daci_3925 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 3088815..3089708 Stenotrophomonas maltophilia R551-3 6477259 YP_002029151.1 CDS Smal_2768 NC_011071.1 3089698 3090624 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: spe:Spro_2542 alpha/beta hydrolase fold-3 domain protein; Alpha/beta hydrolase fold-3 domain-containing protein 3089698..3090624 Stenotrophomonas maltophilia R551-3 6477260 YP_002029152.1 CDS Smal_2769 NC_011071.1 3090851 3091024 R KEGG: xcb:XC_1804 hypothetical protein; hypothetical protein complement(3090851..3091024) Stenotrophomonas maltophilia R551-3 6477262 YP_002029153.1 CDS Smal_2770 NC_011071.1 3091167 3091670 D hypothetical protein 3091167..3091670 Stenotrophomonas maltophilia R551-3 6477263 YP_002029154.1 CDS Smal_2771 NC_011071.1 3091677 3092438 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dac:Daci_4456 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(3091677..3092438) Stenotrophomonas maltophilia R551-3 6477264 YP_002029155.1 CDS Smal_2772 NC_011071.1 3092472 3093413 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: reh:H16_B1093 methylated-DNA-[protein]-cysteine S-methyltransferase; AraC family transcriptional regulator 3092472..3093413 Stenotrophomonas maltophilia R551-3 6477265 YP_002029156.1 CDS Smal_2773 NC_011071.1 3093493 3094518 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV0295 zinc-containing alcohol dehydrogenase superfamily protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(3093493..3094518) Stenotrophomonas maltophilia R551-3 6477266 YP_002029157.1 CDS Smal_2774 NC_011071.1 3095177 3095752 D KEGG: mxa:MXAN_0875 hypothetical protein; hypothetical protein 3095177..3095752 Stenotrophomonas maltophilia R551-3 6477269 YP_002029158.1 CDS Smal_2775 NC_011071.1 3095848 3096399 D PFAM: Lipocalin family protein; KEGG: xcb:XC_1682 outer membrane lipoprotein; lipocalin family protein 3095848..3096399 Stenotrophomonas maltophilia R551-3 6477270 YP_002029159.1 CDS Smal_2776 NC_011071.1 3096562 3097038 D KEGG: xcb:XC_1681 hypothetical protein; hypothetical protein 3096562..3097038 Stenotrophomonas maltophilia R551-3 6477271 YP_002029160.1 CDS Smal_2777 NC_011071.1 3097099 3098889 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xac:XAC2563 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3097099..3098889 Stenotrophomonas maltophilia R551-3 6477272 YP_002029161.1 CDS Smal_2778 NC_011071.1 3099287 3099952 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: xcb:XC_1679 hypothetical protein; HNH endonuclease 3099287..3099952 Stenotrophomonas maltophilia R551-3 6477273 YP_002029162.1 CDS Smal_2779 NC_011071.1 3100055 3101965 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3100055..3101965 Stenotrophomonas maltophilia R551-3 6477274 YP_002029163.1 CDS Smal_2780 NC_011071.1 3102037 3102240 R hypothetical protein complement(3102037..3102240) Stenotrophomonas maltophilia R551-3 6477275 YP_002029164.1 CDS Smal_2781 NC_011071.1 3102407 3102967 R KEGG: xac:XAC3155 hypothetical protein; hypothetical protein complement(3102407..3102967) Stenotrophomonas maltophilia R551-3 6477276 YP_002029165.1 CDS Smal_2782 NC_011071.1 3103101 3103304 R hypothetical protein complement(3103101..3103304) Stenotrophomonas maltophilia R551-3 6477277 YP_002029166.1 CDS Smal_2783 NC_011071.1 3103538 3103639 D hypothetical protein 3103538..3103639 Stenotrophomonas maltophilia R551-3 6477278 YP_002029167.1 CDS Smal_2784 NC_011071.1 3103702 3103986 D KEGG: bch:Bcen2424_3169 hypothetical protein; hypothetical protein 3103702..3103986 Stenotrophomonas maltophilia R551-3 6477279 YP_002029168.1 CDS Smal_2785 NC_011071.1 3103999 3104232 D PFAM: protein of unknown function DUF1653; KEGG: xcb:XC_2583 hypothetical protein; hypothetical protein 3103999..3104232 Stenotrophomonas maltophilia R551-3 6477280 YP_002029169.1 CDS Smal_2786 NC_011071.1 3104318 3104890 D PFAM: regulatory protein TetR; KEGG: atc:AGR_C_4219 hypothetical protein; TetR family transcriptional regulator 3104318..3104890 Stenotrophomonas maltophilia R551-3 6477281 YP_002029170.1 CDS Smal_2787 NC_011071.1 3104904 3105236 D PFAM: small multidrug resistance protein; KEGG: aav:Aave_4701 small multidrug resistance protein; small multidrug resistance protein 3104904..3105236 Stenotrophomonas maltophilia R551-3 6477282 YP_002029171.1 CDS Smal_2788 NC_011071.1 3105259 3105432 R PFAM: protein of unknown function DUF1328; KEGG: xac:XAC1353 hypothetical protein; hypothetical protein complement(3105259..3105432) Stenotrophomonas maltophilia R551-3 6477283 YP_002029172.1 CDS Smal_2789 NC_011071.1 3105527 3106168 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rru:Rru_A0048 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3105527..3106168) Stenotrophomonas maltophilia R551-3 6477284 YP_002029173.1 CDS clpP NC_011071.1 3106267 3106875 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3106267..3106875) Stenotrophomonas maltophilia R551-3 6477285 YP_002029174.1 CDS Smal_2791 NC_011071.1 3106913 3107263 R KEGG: sme:SMc03842 hypothetical protein; hypothetical protein complement(3106913..3107263) Stenotrophomonas maltophilia R551-3 6477286 YP_002029175.1 CDS Smal_2792 NC_011071.1 3107263 3107574 R PFAM: regulatory protein ArsR; KEGG: dac:Daci_2050 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(3107263..3107574) Stenotrophomonas maltophilia R551-3 6477287 YP_002029176.1 CDS Smal_2793 NC_011071.1 3107661 3108353 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: cak:Caul_0902 aspartate racemase; aspartate racemase 3107661..3108353 Stenotrophomonas maltophilia R551-3 6477288 YP_002029177.1 CDS Smal_2794 NC_011071.1 3108378 3108773 R hypothetical protein complement(3108378..3108773) Stenotrophomonas maltophilia R551-3 6477289 YP_002029178.1 CDS Smal_2795 NC_011071.1 3109015 3109524 D KEGG: xcb:XC_1127 hypothetical protein; hypothetical protein 3109015..3109524 Stenotrophomonas maltophilia R551-3 6477290 YP_002029179.1 CDS Smal_2796 NC_011071.1 3109611 3109964 D KEGG: hch:HCH_04660 hypothetical protein; hypothetical protein 3109611..3109964 Stenotrophomonas maltophilia R551-3 6477291 YP_002029180.1 CDS Smal_2797 NC_011071.1 3109961 3110401 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1830 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3109961..3110401 Stenotrophomonas maltophilia R551-3 6477292 YP_002029181.1 CDS Smal_2798 NC_011071.1 3110612 3110968 R PFAM: regulatory protein MerR; KEGG: xom:XOO_3020 hypothetical protein; MerR family transcriptional regulator complement(3110612..3110968) Stenotrophomonas maltophilia R551-3 6477294 YP_002029182.1 CDS ihfA NC_011071.1 3110949 3111248 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3110949..3111248) Stenotrophomonas maltophilia R551-3 6477295 YP_002029183.1 CDS pheT NC_011071.1 3111276 3113684 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3111276..3113684) Stenotrophomonas maltophilia R551-3 6477296 YP_002029184.1 CDS pheS NC_011071.1 3113741 3114736 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3113741..3114736) Stenotrophomonas maltophilia R551-3 6477297 YP_002029185.1 CDS rplT NC_011071.1 3114929 3115288 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3114929..3115288) Stenotrophomonas maltophilia R551-3 6477298 YP_002029186.1 CDS rpmI NC_011071.1 3115300 3115497 R PFAM: ribosomal protein L35; KEGG: xom:XOO_3025 50S ribosomal protein L35; 50S ribosomal protein L35 complement(3115300..3115497) Stenotrophomonas maltophilia R551-3 6477299 YP_002029187.1 CDS infC NC_011071.1 3115782 3116324 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(3115782..3116324) Stenotrophomonas maltophilia R551-3 6477300 YP_002029188.1 CDS thrS NC_011071.1 3116374 3118275 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(3116374..3118275) Stenotrophomonas maltophilia R551-3 6477301 YP_002029189.1 CDS Smal_2806 NC_011071.1 3118705 3119001 D KEGG: xcb:XC_0146 hypothetical protein; hypothetical protein 3118705..3119001 Stenotrophomonas maltophilia R551-3 6477302 YP_002029190.1 CDS Smal_2807 NC_011071.1 3119001 3119264 D KEGG: xcb:XC_0147 hypothetical protein; hypothetical protein 3119001..3119264 Stenotrophomonas maltophilia R551-3 6477303 YP_002029191.1 CDS Smal_2808 NC_011071.1 3119275 3120834 D PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_A1449 hypothetical protein; PepSY-associated TM helix domain-containing protein 3119275..3120834 Stenotrophomonas maltophilia R551-3 6477304 YP_002029192.1 CDS Smal_2809 NC_011071.1 3120871 3122061 R PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_0270 glycoside hydrolase, family 18; glycoside hydrolase family protein complement(3120871..3122061) Stenotrophomonas maltophilia R551-3 6477305 YP_002029193.1 CDS Smal_2810 NC_011071.1 3122216 3123250 D KEGG: dac:Daci_4219 hypothetical protein; hypothetical protein 3122216..3123250 Stenotrophomonas maltophilia R551-3 6477306 YP_002029194.1 CDS Smal_2811 NC_011071.1 3123378 3125486 R KEGG: xcb:XC_1609 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3123378..3125486) Stenotrophomonas maltophilia R551-3 6477307 YP_002029195.1 CDS rpsO NC_011071.1 3125638 3125898 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3125638..3125898) Stenotrophomonas maltophilia R551-3 6477308 YP_002029196.1 CDS truB NC_011071.1 3126072 3126980 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3126072..3126980) Stenotrophomonas maltophilia R551-3 6477309 YP_002029197.1 CDS rbfA NC_011071.1 3127090 3127473 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3127090..3127473) Stenotrophomonas maltophilia R551-3 6477310 YP_002029198.1 CDS infB NC_011071.1 3127635 3130286 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3127635..3130286) Stenotrophomonas maltophilia R551-3 6477311 YP_002029199.1 CDS nusA NC_011071.1 3130379 3131890 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3130379..3131890) Stenotrophomonas maltophilia R551-3 6477312 YP_002029200.1 CDS Smal_2817 NC_011071.1 3131895 3132485 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3131895..3132485) Stenotrophomonas maltophilia R551-3 6477313 YP_002029201.1 CDS Smal_2818 NC_011071.1 3133250 3134710 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3133250..3134710) Stenotrophomonas maltophilia R551-3 6477316 YP_002029202.1 CDS Smal_2819 NC_011071.1 3134726 3136234 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3134726..3136234) Stenotrophomonas maltophilia R551-3 6477317 YP_002029203.1 CDS Smal_2820 NC_011071.1 3136258 3138432 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(3136258..3138432) Stenotrophomonas maltophilia R551-3 6477318 YP_002029204.1 CDS Smal_2821 NC_011071.1 3138440 3138745 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3138440..3138745) Stenotrophomonas maltophilia R551-3 6477319 YP_002029205.1 CDS Smal_2822 NC_011071.1 3138742 3139398 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(3138742..3139398) Stenotrophomonas maltophilia R551-3 6477320 YP_002029206.1 CDS Smal_2823 NC_011071.1 3139408 3139896 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3139408..3139896) Stenotrophomonas maltophilia R551-3 6477321 YP_002029207.1 CDS Smal_2824 NC_011071.1 3139900 3140994 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3139900..3140994) Stenotrophomonas maltophilia R551-3 6477322 YP_002029208.1 CDS Smal_2825 NC_011071.1 3140991 3143225 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(3140991..3143225) Stenotrophomonas maltophilia R551-3 6477323 YP_002029209.1 CDS Smal_2826 NC_011071.1 3143222 3144562 R KEGG: xcb:XC_1594 NADH-ubiquinone oxidoreductase NQO1 subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(3143222..3144562) Stenotrophomonas maltophilia R551-3 6477324 YP_002029210.1 CDS Smal_2827 NC_011071.1 3144567 3145094 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(3144567..3145094) Stenotrophomonas maltophilia R551-3 6477325 YP_002029211.1 CDS Smal_2828 NC_011071.1 3145192 3146499 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3145192..3146499) Stenotrophomonas maltophilia R551-3 6477326 YP_002029212.1 CDS Smal_2829 NC_011071.1 3146496 3147245 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3146496..3147245) Stenotrophomonas maltophilia R551-3 6477327 YP_002029213.1 CDS Smal_2830 NC_011071.1 3147279 3147833 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3147279..3147833) Stenotrophomonas maltophilia R551-3 6477328 YP_002029214.1 CDS Smal_2831 NC_011071.1 3147824 3148228 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(3147824..3148228) Stenotrophomonas maltophilia R551-3 6477329 YP_002029215.1 CDS secG NC_011071.1 3148428 3148865 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: xom:XOO_3068 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(3148428..3148865) Stenotrophomonas maltophilia R551-3 6477331 YP_002029216.1 CDS tpiA NC_011071.1 3148897 3149652 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3148897..3149652) Stenotrophomonas maltophilia R551-3 6477332 YP_002029217.1 CDS Smal_2834 NC_011071.1 3150531 3151466 R PFAM: 2OG-Fe(II) oxygenase; KEGG: xcb:XC_1580 oxidoreductase; 2OG-Fe(II) oxygenase complement(3150531..3151466) Stenotrophomonas maltophilia R551-3 6477333 YP_002029218.1 CDS Smal_2835 NC_011071.1 3151669 3153546 D PFAM: sulfatase; KEGG: spc:Sputcn32_3889 sulfatase; sulfatase 3151669..3153546 Stenotrophomonas maltophilia R551-3 6477334 YP_002029219.1 CDS Smal_2836 NC_011071.1 3153565 3154710 D PFAM: glycosyl transferase group 1; KEGG: xfn:XfasM23_0723 glycosyl transferase group 1; group 1 glycosyl transferase 3153565..3154710 Stenotrophomonas maltophilia R551-3 6477335 YP_002029220.1 CDS Smal_2837 NC_011071.1 3154703 3155560 D PFAM: polysaccharide deacetylase; KEGG: xfn:XfasM23_0722 polysaccharide deacetylase; polysaccharide deacetylase 3154703..3155560 Stenotrophomonas maltophilia R551-3 6477336 YP_002029221.1 CDS Smal_2838 NC_011071.1 3155629 3156651 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; KEGG: xcb:XC_3767 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3155629..3156651 Stenotrophomonas maltophilia R551-3 6477337 YP_002029222.1 CDS glmM NC_011071.1 3156872 3158233 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3156872..3158233) Stenotrophomonas maltophilia R551-3 6477338 YP_002029223.1 CDS Smal_2840 NC_011071.1 3158233 3159108 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(3158233..3159108) Stenotrophomonas maltophilia R551-3 6477339 YP_002029224.1 CDS trpA NC_011071.1 3159328 3160137 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(3159328..3160137) Stenotrophomonas maltophilia R551-3 6477340 YP_002029225.1 CDS Smal_2842 NC_011071.1 3160139 3160819 R KEGG: xcb:XC_1576 hypothetical protein; hypothetical protein complement(3160139..3160819) Stenotrophomonas maltophilia R551-3 6477341 YP_002029226.1 CDS Smal_2843 NC_011071.1 3160816 3162033 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3160816..3162033) Stenotrophomonas maltophilia R551-3 6477342 YP_002029227.1 CDS Smal_2844 NC_011071.1 3162131 3163018 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0102 transcriptional regulator, LysR family; LysR family transcriptional regulator 3162131..3163018 Stenotrophomonas maltophilia R551-3 6477343 YP_002029228.1 CDS Smal_2845 NC_011071.1 3163096 3164205 R PFAM: toxic anion resistance family protein; KEGG: aci:ACIAD2252 putative tellurique resistant protein (KlaB/TelA); toxic anion resistance family protein complement(3163096..3164205) Stenotrophomonas maltophilia R551-3 6477344 YP_002029229.1 CDS Smal_2846 NC_011071.1 3164249 3164956 R KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY complement(3164249..3164956) Stenotrophomonas maltophilia R551-3 6477345 YP_002029230.1 CDS Smal_2847 NC_011071.1 3164953 3170325 R KEGG: pap:PSPA7_1392 hypothetical protein; hypothetical protein complement(3164953..3170325) Stenotrophomonas maltophilia R551-3 6477346 YP_002029231.1 CDS Smal_2848 NC_011071.1 3170411 3172429 R KEGG: pap:PSPA7_1390 hypothetical protein; hypothetical protein complement(3170411..3172429) Stenotrophomonas maltophilia R551-3 6477347 YP_002029232.1 CDS Smal_2849 NC_011071.1 3172426 3173100 R KEGG: pfl:PFL_1113 hypothetical protein; hypothetical protein complement(3172426..3173100) Stenotrophomonas maltophilia R551-3 6477348 YP_002029233.1 CDS Smal_2850 NC_011071.1 3173268 3173924 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(3173268..3173924) Stenotrophomonas maltophilia R551-3 6477349 YP_002029234.1 CDS truA NC_011071.1 3173921 3174691 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(3173921..3174691) Stenotrophomonas maltophilia R551-3 6477350 YP_002029235.1 CDS Smal_2852 NC_011071.1 3174724 3175086 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC2721 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3174724..3175086) Stenotrophomonas maltophilia R551-3 6477351 YP_002029236.1 CDS Smal_2853 NC_011071.1 3175113 3177152 R KEGG: xcv:XCV2874 hypothetical protein; hypothetical protein complement(3175113..3177152) Stenotrophomonas maltophilia R551-3 6477352 YP_002029237.1 CDS Smal_2854 NC_011071.1 3177325 3178353 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3177325..3178353) Stenotrophomonas maltophilia R551-3 6477353 YP_002029238.1 CDS Smal_2855 NC_011071.1 3178446 3179483 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: xcv:XCV2876 2-hydroxyacid dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(3178446..3179483) Stenotrophomonas maltophilia R551-3 6477354 YP_002029239.1 CDS Smal_2856 NC_011071.1 3179476 3180579 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3179476..3180579) Stenotrophomonas maltophilia R551-3 6477355 YP_002029240.1 CDS Smal_2857 NC_011071.1 3180576 3181505 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3180576..3181505) Stenotrophomonas maltophilia R551-3 6477356 YP_002029241.1 CDS Smal_2858 NC_011071.1 3181628 3182278 D PFAM: electron transport protein SCO1/SenC; KEGG: xcv:XCV2879 putative SCO1/SenC family protein; electron transport protein SCO1/SenC 3181628..3182278 Stenotrophomonas maltophilia R551-3 6477357 YP_002029242.1 CDS psd NC_011071.1 3182275 3183117 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3182275..3183117 Stenotrophomonas maltophilia R551-3 6477358 YP_002029243.1 CDS Smal_2860 NC_011071.1 3183229 3183576 R PFAM: protein of unknown function DUF1260; KEGG: shn:Shewana3_2238 hypothetical protein; hypothetical protein complement(3183229..3183576) Stenotrophomonas maltophilia R551-3 6477359 YP_002029244.1 CDS Smal_2861 NC_011071.1 3183601 3185205 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: xcv:XCV2881 lytic mureine transglycosylase precursor; Lytic transglycosylase complement(3183601..3185205) Stenotrophomonas maltophilia R551-3 6477360 YP_002029245.1 CDS Smal_2862 NC_011071.1 3185328 3186833 D PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: xcb:XC_1560 hypothetical protein; hypothetical protein 3185328..3186833 Stenotrophomonas maltophilia R551-3 6477361 YP_002029246.1 CDS greB NC_011071.1 3186923 3187429 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3186923..3187429 Stenotrophomonas maltophilia R551-3 6477362 YP_002029247.1 CDS Smal_2864 NC_011071.1 3187517 3188353 R KEGG: cvi:CV_0811 probable putative transmembrane protein; putative putative transmembrane protein complement(3187517..3188353) Stenotrophomonas maltophilia R551-3 6477363 YP_002029248.1 CDS rimO NC_011071.1 3188350 3189711 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(3188350..3189711) Stenotrophomonas maltophilia R551-3 6477364 YP_002029249.1 CDS Smal_2866 NC_011071.1 3189915 3190586 D PFAM: dienelactone hydrolase; KEGG: xcv:XCV2888 putative dienelactone hydrolase; dienelactone hydrolase 3189915..3190586 Stenotrophomonas maltophilia R551-3 6477365 YP_002029250.1 CDS Smal_2867 NC_011071.1 3190583 3191005 D PFAM: histidine triad (HIT) protein; KEGG: xcv:XCV2889 hypothetical protein; histidine triad (HIT) protein 3190583..3191005 Stenotrophomonas maltophilia R551-3 6477366 YP_002029251.1 CDS Smal_2868 NC_011071.1 3191020 3191187 D KEGG: xcb:XC_1550 hypothetical protein; hypothetical protein 3191020..3191187 Stenotrophomonas maltophilia R551-3 6477367 YP_002029252.1 CDS dcd NC_011071.1 3191286 3191858 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(3191286..3191858) Stenotrophomonas maltophilia R551-3 6477368 YP_002029253.1 CDS Smal_2870 NC_011071.1 3191937 3192791 R KEGG: xcb:XC_1547 hypothetical protein; hypothetical protein complement(3191937..3192791) Stenotrophomonas maltophilia R551-3 6477369 YP_002029254.1 CDS Smal_2871 NC_011071.1 3193005 3195812 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xom:XOO_4140 hypothetical protein; TonB-dependent receptor 3193005..3195812 Stenotrophomonas maltophilia R551-3 6477370 YP_002029255.1 CDS Smal_2872 NC_011071.1 3196206 3199154 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1099 TonB-dependent receptor; TonB-dependent receptor 3196206..3199154 Stenotrophomonas maltophilia R551-3 6477371 YP_002029256.1 CDS Smal_2873 NC_011071.1 3199251 3201284 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: saz:Sama_2025 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase active site domain-containing protein 3199251..3201284 Stenotrophomonas maltophilia R551-3 6477372 YP_002029257.1 CDS Smal_2874 NC_011071.1 3201353 3203557 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcv:XCV2898 metallopeptidase; endothelin-converting enzyme 1 3201353..3203557 Stenotrophomonas maltophilia R551-3 6477373 YP_002029258.1 CDS Smal_2875 NC_011071.1 3203761 3205767 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: xcb:XC_1542 metallopeptidase; neprilysin 3203761..3205767 Stenotrophomonas maltophilia R551-3 6477374 YP_002029259.1 CDS Smal_2876 NC_011071.1 3205907 3208930 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1545 Oar protein; TonB-dependent receptor complement(3205907..3208930) Stenotrophomonas maltophilia R551-3 6477375 YP_002029260.1 CDS Smal_2877 NC_011071.1 3209248 3209742 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rso:RS03882 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 3209248..3209742 Stenotrophomonas maltophilia R551-3 6477376 YP_002029261.1 CDS Smal_2878 NC_011071.1 3209818 3211401 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: xac:XAC2744 phytoene dehydrogenase; amine oxidase 3209818..3211401 Stenotrophomonas maltophilia R551-3 6477377 YP_002029262.1 CDS Smal_2879 NC_011071.1 3211631 3212305 R PFAM: Rhomboid family protein; KEGG: xcb:XC_1541 integral membrane protein; rhomboid family protein complement(3211631..3212305) Stenotrophomonas maltophilia R551-3 6477378 YP_002029263.1 CDS Smal_2880 NC_011071.1 3212399 3212701 R PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: xac:XAC2749 methylated-DNA-protein-cysteine S-methyltransferase related protein; methylated-DNA--protein-cysteine methyltransferase complement(3212399..3212701) Stenotrophomonas maltophilia R551-3 6477379 YP_002029264.1 CDS Smal_2881 NC_011071.1 3212734 3213654 R PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: pna:Pnap_3236 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3212734..3213654) Stenotrophomonas maltophilia R551-3 6477380 YP_002029265.1 CDS Smal_2882 NC_011071.1 3214038 3215003 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 3214038..3215003 Stenotrophomonas maltophilia R551-3 6477381 YP_002029266.1 CDS Smal_2883 NC_011071.1 3215037 3216395 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: xcc:XCC2579 reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation protein complement(3215037..3216395) Stenotrophomonas maltophilia R551-3 6477382 YP_002029267.1 CDS Smal_2885 NC_011071.1 3216611 3217855 R PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: xac:XAC2752 transport protein; hypothetical protein complement(3216611..3217855) Stenotrophomonas maltophilia R551-3 6477384 YP_002029268.1 CDS Smal_2886 NC_011071.1 3217955 3218437 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: xcb:XC_1536 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(3217955..3218437) Stenotrophomonas maltophilia R551-3 6477385 YP_002029269.1 CDS Smal_2887 NC_011071.1 3218549 3219088 D PFAM: NLP/P60 protein; KEGG: xcb:XC_1535 lipoprotein; NLP/P60 protein 3218549..3219088 Stenotrophomonas maltophilia R551-3 6477386 YP_002029270.1 CDS Smal_2888 NC_011071.1 3219288 3219992 D PFAM: NLP/P60 protein; KEGG: xcb:XC_1534 hypothetical protein; NLP/P60 protein 3219288..3219992 Stenotrophomonas maltophilia R551-3 6477387 YP_002029271.1 CDS Smal_2889 NC_011071.1 3220353 3221687 R PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC2758 glutamate symport protein; sodium:dicarboxylate symporter complement(3220353..3221687) Stenotrophomonas maltophilia R551-3 6477388 YP_002029272.1 CDS Smal_2890 NC_011071.1 3221842 3223548 D PFAM: Alkaline phosphatase; KEGG: xcb:XC_1519 alkaline phosphatase; alkaline phosphatase 3221842..3223548 Stenotrophomonas maltophilia R551-3 6477389 YP_002029273.1 CDS Smal_2891 NC_011071.1 3223548 3224090 D KEGG: lbi:LEPBI_I3169 hypothetical protein; putative signal peptide; hypothetical protein 3223548..3224090 Stenotrophomonas maltophilia R551-3 6477390 YP_002029274.1 CDS Smal_2892 NC_011071.1 3224481 3225911 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: xcb:XC_1518 cell cycle protein; tRNA(Ile)-lysidine synthetase 3224481..3225911 Stenotrophomonas maltophilia R551-3 6477391 YP_002029275.1 CDS Smal_2893 NC_011071.1 3225948 3226208 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 3225948..3226208 Stenotrophomonas maltophilia R551-3 6477392 YP_002029276.1 CDS Smal_2894 NC_011071.1 3226198 3227076 D PFAM: Polyprenyl synthetase; KEGG: xcb:XC_1516 geranyltranstransferase; farnesyl-diphosphate synthase; polyprenyl synthetase 3226198..3227076 Stenotrophomonas maltophilia R551-3 6477393 YP_002029277.1 CDS Smal_2895 NC_011071.1 3227187 3227558 R KEGG: xcb:XC_1513 hypothetical protein; hypothetical protein complement(3227187..3227558) Stenotrophomonas maltophilia R551-3 6477394 YP_002029278.1 CDS Smal_2896 NC_011071.1 3227646 3229013 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcb:XC_1512 PmbA protein; peptidase U62 modulator of DNA gyrase complement(3227646..3229013) Stenotrophomonas maltophilia R551-3 6477395 YP_002029279.1 CDS Smal_2897 NC_011071.1 3229082 3229672 D PFAM: protein of unknown function DUF615; KEGG: xcb:XC_1511 hypothetical protein; hypothetical protein 3229082..3229672 Stenotrophomonas maltophilia R551-3 6475643 YP_002029280.1 CDS Smal_2898 NC_011071.1 3229714 3231159 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: xcv:XCV2923 putative modulator of DNA gyrase TldD; peptidase U62 modulator of DNA gyrase complement(3229714..3231159) Stenotrophomonas maltophilia R551-3 6475644 YP_002029281.1 CDS Smal_2899 NC_011071.1 3231219 3235070 R KEGG: xcb:XC_1508 hypothetical protein; hypothetical protein complement(3231219..3235070) Stenotrophomonas maltophilia R551-3 6475645 YP_002029282.1 CDS Smal_2900 NC_011071.1 3235101 3236588 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: xcb:XC_1507 ribonuclease G; ribonuclease, Rne/Rng family complement(3235101..3236588) Stenotrophomonas maltophilia R551-3 6475646 YP_002029283.1 CDS Smal_2901 NC_011071.1 3236581 3237189 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: xcb:XC_1506 Maf-like protein; maf protein complement(3236581..3237189) Stenotrophomonas maltophilia R551-3 6475647 YP_002029284.1 CDS Smal_2902 NC_011071.1 3237319 3238056 D PFAM: protein of unknown function DUF541; KEGG: xcv:XCV2929 putative outer membrane protein; hypothetical protein 3237319..3238056 Stenotrophomonas maltophilia R551-3 6475648 YP_002029285.1 CDS Smal_2903 NC_011071.1 3238274 3238930 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC2774 TonB-like protein; TonB family protein 3238274..3238930 Stenotrophomonas maltophilia R551-3 6475649 YP_002029286.1 CDS Smal_2904 NC_011071.1 3239131 3241965 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfn:XfasM23_1806 TonB-dependent receptor; TonB-dependent receptor 3239131..3241965 Stenotrophomonas maltophilia R551-3 6475650 YP_002029287.1 CDS Smal_2905 NC_011071.1 3242104 3243525 D TIGRFAM: arginine/ornithine antiporter; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: ppw:PputW619_4221 arginine/ornithine antiporter; arginine/ornithine antiporter 3242104..3243525 Stenotrophomonas maltophilia R551-3 6475651 YP_002029288.1 CDS Smal_2906 NC_011071.1 3243609 3244568 R KEGG: xcb:XC_1120 xylanase; xylanase complement(3243609..3244568) Stenotrophomonas maltophilia R551-3 6475652 YP_002029289.1 CDS Smal_2907 NC_011071.1 3244759 3245229 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(3244759..3245229) Stenotrophomonas maltophilia R551-3 6475654 YP_002029290.1 CDS Smal_2908 NC_011071.1 3245294 3245707 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: xac:XAC2777 hypothetical protein; iojap family protein complement(3245294..3245707) Stenotrophomonas maltophilia R551-3 6475655 YP_002029291.1 CDS nadD NC_011071.1 3245766 3246431 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(3245766..3246431) Stenotrophomonas maltophilia R551-3 6475656 YP_002029292.1 CDS holA NC_011071.1 3246436 3247473 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(3246436..3247473) Stenotrophomonas maltophilia R551-3 6475657 YP_002029293.1 CDS Smal_2911 NC_011071.1 3247483 3248067 R PFAM: Rare lipoprotein B; KEGG: xcv:XCV2936 rare lipoprotein B; Rare lipoprotein B complement(3247483..3248067) Stenotrophomonas maltophilia R551-3 6475658 YP_002029294.1 CDS leuS NC_011071.1 3248204 3250846 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(3248204..3250846) Stenotrophomonas maltophilia R551-3 6475659 YP_002029295.1 CDS Smal_2913 NC_011071.1 3250952 3251548 R KEGG: xom:XOO_3143 hypothetical protein; hypothetical protein complement(3250952..3251548) Stenotrophomonas maltophilia R551-3 6475660 YP_002029296.1 CDS Smal_2914 NC_011071.1 3251673 3252530 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcb:XC_1495 thioredoxin; thioredoxin 3251673..3252530 Stenotrophomonas maltophilia R551-3 6475661 YP_002029297.1 CDS Smal_2915 NC_011071.1 3252638 3254338 D PFAM: Peptidoglycan-binding LysM; KEGG: eba:ebA2921 hypothetical protein; peptidoglycan-binding LysM 3252638..3254338 Stenotrophomonas maltophilia R551-3 6475662 YP_002029298.1 CDS Smal_2916 NC_011071.1 3254335 3255966 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE2 domain protein; KEGG: cvi:CV_3192 probable two component sensor; diguanylate cyclase with Chase2 sensor 3254335..3255966 Stenotrophomonas maltophilia R551-3 6475663 YP_002029299.1 CDS Smal_2917 NC_011071.1 3256041 3256493 D KEGG: xac:XAC2784 hypothetical protein; hypothetical protein 3256041..3256493 Stenotrophomonas maltophilia R551-3 6475664 YP_002029300.1 CDS Smal_2918 NC_011071.1 3256541 3257257 D KEGG: xcb:XC_3191 hypothetical protein; hypothetical protein 3256541..3257257 Stenotrophomonas maltophilia R551-3 6475665 YP_002029301.1 CDS Smal_2919 NC_011071.1 3257266 3258579 R KEGG: xac:XAC1396 hypothetical protein; hypothetical protein complement(3257266..3258579) Stenotrophomonas maltophilia R551-3 6475666 YP_002029302.1 CDS Smal_2920 NC_011071.1 3258656 3259339 D PFAM: protein of unknown function DUF502; KEGG: xcb:XC_2891 hypothetical protein; hypothetical protein 3258656..3259339 Stenotrophomonas maltophilia R551-3 6475667 YP_002029303.1 CDS Smal_2921 NC_011071.1 3259336 3260121 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: xcb:XC_2892 hypothetical protein; hypothetical protein 3259336..3260121 Stenotrophomonas maltophilia R551-3 6475668 YP_002029304.1 CDS Smal_2922 NC_011071.1 3260217 3262157 D PFAM: protein of unknown function DUF885; KEGG: xcv:XCV1450 putative secreted protein; hypothetical protein 3260217..3262157 Stenotrophomonas maltophilia R551-3 6475669 YP_002029305.1 CDS Smal_2923 NC_011071.1 3262171 3263241 D PFAM: beta-lactamase; KEGG: rca:Rcas_0939 beta-lactamase; beta-lactamase 3262171..3263241 Stenotrophomonas maltophilia R551-3 6475670 YP_002029306.1 CDS Smal_2924 NC_011071.1 3263238 3263642 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC1390 glyoxylase I family protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3263238..3263642 Stenotrophomonas maltophilia R551-3 6475671 YP_002029307.1 CDS Smal_2925 NC_011071.1 3264044 3264487 D KEGG: xac:XAC1387 hypothetical protein; hypothetical protein 3264044..3264487 Stenotrophomonas maltophilia R551-3 6475672 YP_002029308.1 CDS metG NC_011071.1 3264591 3266672 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3264591..3266672 Stenotrophomonas maltophilia R551-3 6475673 YP_002029309.1 CDS Smal_2927 NC_011071.1 3266751 3267341 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: xcb:XC_2901 phosphotransferase; HAD-superfamily hydrolase 3266751..3267341 Stenotrophomonas maltophilia R551-3 6475674 YP_002029310.1 CDS Smal_2928 NC_011071.1 3267367 3267780 D Involved in the electron transport chain; ferredoxin 3267367..3267780 Stenotrophomonas maltophilia R551-3 6475675 YP_002029311.1 CDS Smal_2929 NC_011071.1 3267982 3268329 R PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_2914 hypothetical protein; endoribonuclease L-PSP complement(3267982..3268329) Stenotrophomonas maltophilia R551-3 6475676 YP_002029312.1 CDS Smal_2930 NC_011071.1 3268522 3271086 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: xcb:XC_2916 hypothetical protein; hypothetical protein 3268522..3271086 Stenotrophomonas maltophilia R551-3 6475677 YP_002029313.1 CDS Smal_2931 NC_011071.1 3271207 3272526 R PFAM: virulence factor family protein; KEGG: xcb:XC_2917 virulence protein; virulence factor family protein complement(3271207..3272526) Stenotrophomonas maltophilia R551-3 6475678 YP_002029314.1 CDS Smal_2932 NC_011071.1 3272632 3273249 R KEGG: xcv:XCV1426 hypothetical protein; hypothetical protein complement(3272632..3273249) Stenotrophomonas maltophilia R551-3 6475679 YP_002029315.1 CDS Smal_2933 NC_011071.1 3273246 3273434 R KEGG: xcv:XCV1423 hypothetical protein; hypothetical protein complement(3273246..3273434) Stenotrophomonas maltophilia R551-3 6475680 YP_002029316.1 CDS Smal_2934 NC_011071.1 3273469 3274071 R KEGG: xcb:XC_2919 hypothetical protein; hypothetical protein complement(3273469..3274071) Stenotrophomonas maltophilia R551-3 6475681 YP_002029317.1 CDS Smal_2935 NC_011071.1 3274301 3275452 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_2703 TPR domain protein; hypothetical protein 3274301..3275452 Stenotrophomonas maltophilia R551-3 6475682 YP_002029318.1 CDS Smal_2936 NC_011071.1 3275460 3275795 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: xcb:XC_2927 hypothetical protein; alkylphosphonate utilization operon protein PhnA complement(3275460..3275795) Stenotrophomonas maltophilia R551-3 6475683 YP_002029319.1 CDS Smal_2937 NC_011071.1 3275976 3277337 D KEGG: xac:XAC1357 heat shock protein; heat shock protein 3275976..3277337 Stenotrophomonas maltophilia R551-3 6475684 YP_002029320.1 CDS Smal_2938 NC_011071.1 3277457 3277861 D PFAM: protein of unknown function UPF0153; KEGG: dar:Daro_1958 hypothetical protein; hypothetical protein 3277457..3277861 Stenotrophomonas maltophilia R551-3 6475685 YP_002029321.1 CDS Smal_2939 NC_011071.1 3277873 3278055 D hypothetical protein 3277873..3278055 Stenotrophomonas maltophilia R551-3 6475686 YP_002029322.1 CDS Smal_2940 NC_011071.1 3278105 3278986 R KEGG: xcb:XC_2932 hypothetical protein; hypothetical protein complement(3278105..3278986) Stenotrophomonas maltophilia R551-3 6475687 YP_002029323.1 CDS Smal_2941 NC_011071.1 3278999 3279532 R KEGG: xcb:XC_2933 hypothetical protein; hypothetical protein complement(3278999..3279532) Stenotrophomonas maltophilia R551-3 6475688 YP_002029324.1 CDS Smal_2942 NC_011071.1 3279529 3280107 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: xcb:XC_2934 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit complement(3279529..3280107) Stenotrophomonas maltophilia R551-3 6475689 YP_002029325.1 CDS Smal_2943 NC_011071.1 3280233 3280412 D hypothetical protein 3280233..3280412 Stenotrophomonas maltophilia R551-3 6475690 YP_002029326.1 CDS Smal_2944 NC_011071.1 3280448 3281041 D KEGG: azo:azo0051 hypothetical protein; hypothetical protein 3280448..3281041 Stenotrophomonas maltophilia R551-3 6475691 YP_002029327.1 CDS Smal_2945 NC_011071.1 3281482 3282315 R PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit complement(3281482..3282315) Stenotrophomonas maltophilia R551-3 6475692 YP_002029328.1 CDS Smal_2946 NC_011071.1 3282312 3282833 R PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein complement(3282312..3282833) Stenotrophomonas maltophilia R551-3 6475693 YP_002029329.1 CDS Smal_2947 NC_011071.1 3283005 3283271 R PFAM: zinc finger DksA/TraR C4-type; KEGG: xac:XAC1355 hypothetical protein; hypothetical protein complement(3283005..3283271) Stenotrophomonas maltophilia R551-3 6475694 YP_002029330.1 CDS Smal_2948 NC_011071.1 3283432 3283989 R KEGG: xom:XOO_3584 hypothetical protein; hypothetical protein complement(3283432..3283989) Stenotrophomonas maltophilia R551-3 6475695 YP_002029331.1 CDS Smal_2949 NC_011071.1 3284051 3284551 D PFAM: protein of unknown function DUF45; KEGG: xcv:XCV1405 hypothetical protein; hypothetical protein 3284051..3284551 Stenotrophomonas maltophilia R551-3 6475696 YP_002029332.1 CDS Smal_2950 NC_011071.1 3284599 3285297 D PFAM: RNA-binding S4 domain protein; KEGG: xcb:XC_1158 pseudouridylate synthase; RNA-binding S4 domain-containing protein 3284599..3285297 Stenotrophomonas maltophilia R551-3 6475697 YP_002029333.1 CDS Smal_2951 NC_011071.1 3285446 3287035 D PFAM: phospholipase D/Transphosphatidylase; KEGG: xac:XAC2871 cardiolipin synthase; phospholipase D/transphosphatidylase 3285446..3287035 Stenotrophomonas maltophilia R551-3 6475698 YP_002029334.1 CDS Smal_2952 NC_011071.1 3287039 3288115 R PFAM: Metal-dependent hydrolase HDOD; KEGG: xcv:XCV0072 putative secreted protein; putative signal transduction protein complement(3287039..3288115) Stenotrophomonas maltophilia R551-3 6475699 YP_002029335.1 CDS Smal_2953 NC_011071.1 3288394 3289491 D PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: xac:XAC1350 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 3288394..3289491 Stenotrophomonas maltophilia R551-3 6475700 YP_002029336.1 CDS Smal_2954 NC_011071.1 3289536 3292379 R TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: xcb:XC_2942 serine protease; autotransporter-associated beta strand repeat-containing protein complement(3289536..3292379) Stenotrophomonas maltophilia R551-3 6475701 YP_002029337.1 CDS Smal_2955 NC_011071.1 3292563 3293738 D KEGG: xcv:XCV1401 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3292563..3293738 Stenotrophomonas maltophilia R551-3 6475702 YP_002029338.1 CDS Smal_2956 NC_011071.1 3293863 3294204 D KEGG: xcc:XCC1296 outer membrane protein; outer membrane protein 3293863..3294204 Stenotrophomonas maltophilia R551-3 6475703 YP_002029339.1 CDS Smal_2957 NC_011071.1 3294362 3294772 D KEGG: xcb:XC_2945 hypothetical protein; hypothetical protein 3294362..3294772 Stenotrophomonas maltophilia R551-3 6475704 YP_002029340.1 CDS Smal_2958 NC_011071.1 3295079 3296716 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: psa:PST_3754 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3295079..3296716) Stenotrophomonas maltophilia R551-3 6475705 YP_002029341.1 CDS Smal_2959 NC_011071.1 3296830 3297828 D KEGG: xac:XAC1342 mRNA 3'-end processing factor; mRNA 3'-end processing factor 3296830..3297828 Stenotrophomonas maltophilia R551-3 6475706 YP_002029342.1 CDS Smal_2960 NC_011071.1 3297825 3299432 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 3297825..3299432 Stenotrophomonas maltophilia R551-3 6475707 YP_002029343.1 CDS Smal_2961 NC_011071.1 3299429 3301888 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: xcv:XCV1393 ATP-dependent helicase; DEAD/DEAH box helicase 3299429..3301888 Stenotrophomonas maltophilia R551-3 6475708 YP_002029344.1 CDS Smal_2962 NC_011071.1 3301878 3302519 D PFAM: metallophosphoesterase; KEGG: xcv:XCV1392 putative phosphoesterase; metallophosphoesterase 3301878..3302519 Stenotrophomonas maltophilia R551-3 6475709 YP_002029345.1 CDS Smal_2963 NC_011071.1 3302521 3302790 R hypothetical protein complement(3302521..3302790) Stenotrophomonas maltophilia R551-3 6475710 YP_002029346.1 CDS Smal_2964 NC_011071.1 3302973 3304241 R PFAM: monooxygenase FAD-binding; KEGG: xcb:XC_2954 oxidoreductase; monooxygenase FAD-binding complement(3302973..3304241) Stenotrophomonas maltophilia R551-3 6475711 YP_002029347.1 CDS Smal_2965 NC_011071.1 3304344 3304550 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: xom:XOO_1765 cold shock protein; cold-shock DNA-binding domain-containing protein complement(3304344..3304550) Stenotrophomonas maltophilia R551-3 6475712 YP_002029348.1 CDS Smal_2966 NC_011071.1 3304639 3305385 R Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase complement(3304639..3305385) Stenotrophomonas maltophilia R551-3 6475713 YP_002029349.1 CDS Smal_2967 NC_011071.1 3305468 3306022 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(3305468..3306022) Stenotrophomonas maltophilia R551-3 6475714 YP_002029350.1 CDS Smal_2968 NC_011071.1 3306022 3307029 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(3306022..3307029) Stenotrophomonas maltophilia R551-3 6475715 YP_002029351.1 CDS Smal_2969 NC_011071.1 3307193 3307888 R PFAM: DSBA oxidoreductase; KEGG: xac:XAC1331 polyketide synthase; DSBA oxidoreductase complement(3307193..3307888) Stenotrophomonas maltophilia R551-3 6475716 YP_002029352.1 CDS Smal_2970 NC_011071.1 3308002 3308511 R PFAM: adenylate cyclase; KEGG: xcb:XC_2962 hypothetical protein; adenylate cyclase complement(3308002..3308511) Stenotrophomonas maltophilia R551-3 6475717 YP_002029353.1 CDS rumA NC_011071.1 3308521 3309855 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3308521..3309855) Stenotrophomonas maltophilia R551-3 6475718 YP_002029354.1 CDS Smal_2972 NC_011071.1 3309983 3310711 D PFAM: response regulator receiver; Hpt domain protein; KEGG: xcb:XC_2965 hypothetical protein; response regulator receiver protein 3309983..3310711 Stenotrophomonas maltophilia R551-3 6475719 YP_002029355.1 CDS recO NC_011071.1 3311244 3311963 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(3311244..3311963) Stenotrophomonas maltophilia R551-3 6475720 YP_002029356.1 CDS era NC_011071.1 3311982 3312878 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3311982..3312878) Stenotrophomonas maltophilia R551-3 6475721 YP_002029357.1 CDS rnc NC_011071.1 3312875 3313555 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3312875..3313555) Stenotrophomonas maltophilia R551-3 6475722 YP_002029358.1 CDS Smal_2976 NC_011071.1 3313545 3313928 R KEGG: xcv:XCV1375 hypothetical protein; hypothetical protein complement(3313545..3313928) Stenotrophomonas maltophilia R551-3 6475723 YP_002029359.1 CDS Smal_2977 NC_011071.1 3313981 3314775 R KEGG: xac:XAC1323 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(3313981..3314775) Stenotrophomonas maltophilia R551-3 6475724 YP_002029360.1 CDS Smal_2978 NC_011071.1 3314830 3316638 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3314830..3316638) Stenotrophomonas maltophilia R551-3 6475795 YP_002029361.1 CDS Smal_2979 NC_011071.1 3316804 3318339 R KEGG: xac:XAC1321 periplasmic protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(3316804..3318339) Stenotrophomonas maltophilia R551-3 6475796 YP_002029362.1 CDS Smal_2980 NC_011071.1 3318414 3319295 R PFAM: Anti sigma-E protein RseA family protein; KEGG: xac:XAC1320 regulatory protein; anti sigma-E protein, RseA complement(3318414..3319295) Stenotrophomonas maltophilia R551-3 6475797 YP_002029363.1 CDS Smal_2981 NC_011071.1 3319292 3319912 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3319292..3319912) Stenotrophomonas maltophilia R551-3 6475798 YP_002029364.1 CDS Smal_2982 NC_011071.1 3320147 3322210 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: xcc:XCC1266 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 3320147..3322210 Stenotrophomonas maltophilia R551-3 6475799 YP_002029365.1 CDS Smal_2983 NC_011071.1 3322967 3323830 D PFAM: Pirin domain protein; KEGG: xcb:XC_1402 pirin-related protein; Pirin domain-containing protein 3322967..3323830 Stenotrophomonas maltophilia R551-3 6475800 YP_002029366.1 CDS Smal_2984 NC_011071.1 3323952 3324671 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: bxe:Bxe_A0111 aquaporin Z; MIP family channel protein 3323952..3324671 Stenotrophomonas maltophilia R551-3 6475801 YP_002029367.1 CDS Smal_2985 NC_011071.1 3324868 3325326 D KEGG: xcb:XC_1401 hypothetical protein; hypothetical protein 3324868..3325326 Stenotrophomonas maltophilia R551-3 6475802 YP_002029368.1 CDS Smal_2986 NC_011071.1 3325410 3326261 R PFAM: Pirin domain protein; KEGG: xcb:XC_1399 pirin; Pirin domain-containing protein complement(3325410..3326261) Stenotrophomonas maltophilia R551-3 6475803 YP_002029369.1 CDS Smal_2987 NC_011071.1 3326477 3328558 D PFAM: carbon starvation protein CstA; KEGG: xcb:XC_1398 carbon starvation protein A; carbon starvation protein CstA 3326477..3328558 Stenotrophomonas maltophilia R551-3 6475804 YP_002029370.1 CDS Smal_2988 NC_011071.1 3328558 3328782 D PFAM: protein of unknown function DUF466; KEGG: xcb:XC_1397 hypothetical protein; hypothetical protein 3328558..3328782 Stenotrophomonas maltophilia R551-3 6475805 YP_002029371.1 CDS Smal_2989 NC_011071.1 3329215 3330465 R PFAM: protein of unknown function DUF819; KEGG: xcv:XCV3040 hypothetical protein; hypothetical protein complement(3329215..3330465) Stenotrophomonas maltophilia R551-3 6475806 YP_002029372.1 CDS Smal_2990 NC_011071.1 3330599 3330988 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 3330599..3330988 Stenotrophomonas maltophilia R551-3 6475807 YP_002029373.1 CDS Smal_2991 NC_011071.1 3331019 3332308 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xcv:XCV1254 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase complement(3331019..3332308) Stenotrophomonas maltophilia R551-3 6475808 YP_002029374.1 CDS Smal_2992 NC_011071.1 3332295 3333008 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC1221 two-component system regulatory protein; winged helix family two component transcriptional regulator complement(3332295..3333008) Stenotrophomonas maltophilia R551-3 6475809 YP_002029375.1 CDS Smal_2993 NC_011071.1 3333139 3334842 D PFAM: glycosyl transferase family 39; KEGG: xcb:XC_3127 hypothetical protein; glycosyl transferase family protein 3333139..3334842 Stenotrophomonas maltophilia R551-3 6475810 YP_002029376.1 CDS Smal_2994 NC_011071.1 3334954 3335721 D KEGG: xcv:XCV1251 hypothetical protein; hypothetical protein 3334954..3335721 Stenotrophomonas maltophilia R551-3 6475811 YP_002029377.1 CDS Smal_2995 NC_011071.1 3335718 3337367 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: xac:XAC1218 inner membrane protein; sulfatase 3335718..3337367 Stenotrophomonas maltophilia R551-3 6475812 YP_002029378.1 CDS Smal_2996 NC_011071.1 3337967 3339931 D PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: xcv:XCV1249 putative peptidyl dipeptidase precursor; peptidyl-dipeptidase A 3337967..3339931 Stenotrophomonas maltophilia R551-3 6475813 YP_002029379.1 CDS Smal_2997 NC_011071.1 3340051 3340443 R KEGG: xcb:XC_3133 hypothetical protein; hypothetical protein complement(3340051..3340443) Stenotrophomonas maltophilia R551-3 6475814 YP_002029380.1 CDS Smal_2998 NC_011071.1 3340513 3341409 R PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pae:PA2033 hypothetical protein; FAD-binding 9 siderophore-interacting domain-containing protein complement(3340513..3341409) Stenotrophomonas maltophilia R551-3 6475815 YP_002029381.1 CDS Smal_2999 NC_011071.1 3341552 3342778 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_3134 MFS transporter; Bcr/CflA subfamily drug resistance transporter complement(3341552..3342778) Stenotrophomonas maltophilia R551-3 6475816 YP_002029382.1 CDS Smal_3000 NC_011071.1 3343242 3346109 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3343242..3346109 Stenotrophomonas maltophilia R551-3 6475817 YP_002029383.1 CDS Smal_3001 NC_011071.1 3346210 3346620 R PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: cak:Caul_2584 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(3346210..3346620) Stenotrophomonas maltophilia R551-3 6475818 YP_002029384.1 CDS Smal_3002 NC_011071.1 3346727 3348094 R PFAM: amino acid permease-associated region; KEGG: xcv:XCV3131 amino acid transporter family protein; amino acid permease-associated protein complement(3346727..3348094) Stenotrophomonas maltophilia R551-3 6475819 YP_002029385.1 CDS Smal_3003 NC_011071.1 3348177 3348899 R PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: xcb:XC_3141 transcriptional regulator AraC/XylS family; AraC family transcriptional regulator complement(3348177..3348899) Stenotrophomonas maltophilia R551-3 6475820 YP_002029386.1 CDS Smal_3004 NC_011071.1 3349007 3349393 D KEGG: scl:sce9285 hypothetical protein; hypothetical protein 3349007..3349393 Stenotrophomonas maltophilia R551-3 6475821 YP_002029387.1 CDS Smal_3005 NC_011071.1 3349403 3350104 R KEGG: pfl:PFL_3106 BioH protein, putative; BioH protein complement(3349403..3350104) Stenotrophomonas maltophilia R551-3 6475822 YP_002029388.1 CDS Smal_3006 NC_011071.1 3350237 3350524 D KEGG: xac:XAC3553 hypothetical protein; hypothetical protein 3350237..3350524 Stenotrophomonas maltophilia R551-3 6475823 YP_002029389.1 CDS Smal_3007 NC_011071.1 3350611 3352734 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xom:XOO_2704 chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3350611..3352734) Stenotrophomonas maltophilia R551-3 6475824 YP_002029390.1 CDS Smal_3008 NC_011071.1 3352952 3354301 D PFAM: ATPase associated with various cellular activities AAA_5; KEGG: syp:SYNPCC7002_A1072 GTPase subunit of type II restriction endonuclease; ATPase 3352952..3354301 Stenotrophomonas maltophilia R551-3 6475825 YP_002029391.1 CDS Smal_3009 NC_011071.1 3354288 3355670 D KEGG: syp:SYNPCC7002_A1073 hypothetical protein; hypothetical protein 3354288..3355670 Stenotrophomonas maltophilia R551-3 6475826 YP_002029392.1 CDS Smal_3010 NC_011071.1 3355760 3356716 D PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: xcb:XC_0920 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3355760..3356716 Stenotrophomonas maltophilia R551-3 6475827 YP_002029393.1 CDS Smal_3011 NC_011071.1 3356721 3357392 D PFAM: Peptidase M23; KEGG: xac:XAC3368 hypothetical protein; peptidase M23 3356721..3357392 Stenotrophomonas maltophilia R551-3 6475828 YP_002029394.1 CDS Smal_3012 NC_011071.1 3357328 3357996 R hypothetical protein complement(3357328..3357996) Stenotrophomonas maltophilia R551-3 6475829 YP_002029395.1 CDS Smal_3013 NC_011071.1 3358114 3359406 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3358114..3359406) Stenotrophomonas maltophilia R551-3 6475830 YP_002029396.1 CDS Smal_3014 NC_011071.1 3359950 3360135 R KEGG: xfn:XfasM23_1720 hypothetical protein; hypothetical protein complement(3359950..3360135) Stenotrophomonas maltophilia R551-3 6475831 YP_002029397.1 CDS Smal_3015 NC_011071.1 3360203 3361066 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: xcc:XCC1051 integral membrane proteinase subunit; HflC protein complement(3360203..3361066) Stenotrophomonas maltophilia R551-3 6475832 YP_002029398.1 CDS Smal_3016 NC_011071.1 3361063 3362196 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: xcv:XCV1175 putative integral membrane protease subunit HflK; HflK protein complement(3361063..3362196) Stenotrophomonas maltophilia R551-3 6475833 YP_002029399.1 CDS Smal_3017 NC_011071.1 3362350 3363345 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xfa:XF0451 hypothetical protein; YhdH/YhfP family quinone oxidoreductase 3362350..3363345 Stenotrophomonas maltophilia R551-3 6475834 YP_002029400.1 CDS Smal_3018 NC_011071.1 3363434 3363805 D PFAM: response regulator receiver; KEGG: xcb:XC_3197 regulatory protein-PilH family; response regulator receiver protein 3363434..3363805 Stenotrophomonas maltophilia R551-3 6475835 YP_002029401.1 CDS Smal_3019 NC_011071.1 3363904 3364791 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: xcb:XC_3198 curved DNA binding protein; heat shock protein DnaJ domain-containing protein complement(3363904..3364791) Stenotrophomonas maltophilia R551-3 6475836 YP_002029402.1 CDS Smal_3020 NC_011071.1 3365053 3365535 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xcb:XC_3200 peroxiredoxin; redoxin domain-containing protein 3365053..3365535 Stenotrophomonas maltophilia R551-3 6475837 YP_002029403.1 CDS Smal_3021 NC_011071.1 3365565 3366140 D PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: xcb:XC_3201 bacterioferritin; ferritin Dps family protein 3365565..3366140 Stenotrophomonas maltophilia R551-3 6475838 YP_002029404.1 CDS Smal_3022 NC_011071.1 3366254 3368635 R TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: xcv:XCV1168 bifunctional penicillin-binding protein 1C; penicillin-binding protein 1C complement(3366254..3368635) Stenotrophomonas maltophilia R551-3 6475839 YP_002029405.1 CDS Smal_3023 NC_011071.1 3368700 3373607 R PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: xcv:XCV1164 putative secreted protein; alpha-2-macroglobulin domain-containing protein complement(3368700..3373607) Stenotrophomonas maltophilia R551-3 6475840 YP_002029406.1 CDS prpD NC_011071.1 3373812 3375272 R functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase complement(3373812..3375272) Stenotrophomonas maltophilia R551-3 6475841 YP_002029407.1 CDS Smal_3025 NC_011071.1 3375425 3376603 R TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: cvi:CV_2053 hypothetical protein; AcnD-accessory protein PrpF complement(3375425..3376603) Stenotrophomonas maltophilia R551-3 6475842 YP_002029408.1 CDS Smal_3026 NC_011071.1 3376627 3376953 R PFAM: plasmid stabilization system; KEGG: xcb:XC_3211 hypothetical protein; plasmid stabilization system complement(3376627..3376953) Stenotrophomonas maltophilia R551-3 6475843 YP_002029409.1 CDS Smal_3027 NC_011071.1 3376940 3377197 R TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: gvi:gsr0356 hypothetical protein; putative addiction module antidote protein complement(3376940..3377197) Stenotrophomonas maltophilia R551-3 6475844 YP_002029410.1 CDS Smal_3028 NC_011071.1 3377298 3379916 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3377298..3379916) Stenotrophomonas maltophilia R551-3 6475845 YP_002029411.1 CDS Smal_3029 NC_011071.1 3380014 3381171 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(3380014..3381171) Stenotrophomonas maltophilia R551-3 6475846 YP_002029412.1 CDS prpB NC_011071.1 3381208 3382101 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(3381208..3382101) Stenotrophomonas maltophilia R551-3 6475847 YP_002029413.1 CDS Smal_3031 NC_011071.1 3382255 3383838 D KEGG: xac:XAC1136 propionate catabolism regulatory protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; putative sigma-54 specific transcriptional regulator 3382255..3383838 Stenotrophomonas maltophilia R551-3 6475848 YP_002029414.1 CDS Smal_3032 NC_011071.1 3383913 3384374 R PFAM: DoxX family protein; KEGG: aba:Acid345_2898 DoxX; DoxX family protein complement(3383913..3384374) Stenotrophomonas maltophilia R551-3 6475849 YP_002029415.1 CDS Smal_3033 NC_011071.1 3384580 3385179 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(3384580..3385179) Stenotrophomonas maltophilia R551-3 6475850 YP_002029416.1 CDS Smal_3034 NC_011071.1 3385238 3386047 D KEGG: ccr:CC_2910 hypothetical protein; hypothetical protein 3385238..3386047 Stenotrophomonas maltophilia R551-3 6475851 YP_002029417.1 CDS Smal_3035 NC_011071.1 3386054 3386257 R PFAM: protein of unknown function DUF1458; KEGG: met:M446_2854 protein of unknown function DUF1458; hypothetical protein complement(3386054..3386257) Stenotrophomonas maltophilia R551-3 6475852 YP_002029418.1 CDS aroK NC_011071.1 3386357 3386899 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 3386357..3386899 Stenotrophomonas maltophilia R551-3 6475853 YP_002029419.1 CDS aroB NC_011071.1 3386896 3388008 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3386896..3388008 Stenotrophomonas maltophilia R551-3 6475854 YP_002029420.1 CDS Smal_3038 NC_011071.1 3388131 3388370 D KEGG: xcv:XCV3162 hypothetical protein; hypothetical protein 3388131..3388370 Stenotrophomonas maltophilia R551-3 6475855 YP_002029421.1 CDS hemE NC_011071.1 3388397 3389479 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 3388397..3389479 Stenotrophomonas maltophilia R551-3 6475856 YP_002029422.1 CDS Smal_3040 NC_011071.1 3389572 3390981 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_1263 MFS transporter; EmrB/QacA subfamily drug resistance transporter 3389572..3390981 Stenotrophomonas maltophilia R551-3 6475857 YP_002029423.1 CDS Smal_3041 NC_011071.1 3391532 3395059 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV3166 two-component system sensor histidine kinase-response regulator hybrid protein; histidine kinase complement(3391532..3395059) Stenotrophomonas maltophilia R551-3 6475858 YP_002029424.1 CDS Smal_3042 NC_011071.1 3395157 3398702 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: xcv:XCV3167 two-component system sensor histidine kinase-response regulator hybrid protein; integral membrane sensor hybrid histidine kinase complement(3395157..3398702) Stenotrophomonas maltophilia R551-3 6475859 YP_002029425.1 CDS Smal_3043 NC_011071.1 3398868 3399500 D PFAM: YceI family protein; KEGG: xcb:XC_1259 hypothetical protein; hypothetical protein 3398868..3399500 Stenotrophomonas maltophilia R551-3 6475860 YP_002029426.1 CDS Smal_3044 NC_011071.1 3399511 3400083 D PFAM: cytochrome B561; KEGG: xcb:XC_1258 cytochrome b561; cytochrome B561 3399511..3400083 Stenotrophomonas maltophilia R551-3 6475861 YP_002029427.1 CDS Smal_3045 NC_011071.1 3400087 3400659 D PFAM: YceI family protein; KEGG: xcb:XC_1257 hypothetical protein; hypothetical protein 3400087..3400659 Stenotrophomonas maltophilia R551-3 6475862 YP_002029428.1 CDS Smal_3046 NC_011071.1 3400739 3400966 R PFAM: glutaredoxin 2; KEGG: xom:XOO_1720 hypothetical protein; glutaredoxin complement(3400739..3400966) Stenotrophomonas maltophilia R551-3 6475863 YP_002029429.1 CDS Smal_3047 NC_011071.1 3401067 3402449 D KEGG: xcb:XC_1255 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 3401067..3402449 Stenotrophomonas maltophilia R551-3 6475864 YP_002029430.1 CDS Smal_3048 NC_011071.1 3402653 3403648 D PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_1254 hydrolase; alpha/beta hydrolase fold domain-containing protein 3402653..3403648 Stenotrophomonas maltophilia R551-3 6475865 YP_002029431.1 CDS Smal_3049 NC_011071.1 3403739 3404806 R PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: xcb:XC_1253 homoserine dehydrogenase; Homoserine dehydrogenase complement(3403739..3404806) Stenotrophomonas maltophilia R551-3 6475866 YP_002029432.1 CDS Smal_3050 NC_011071.1 3404803 3406038 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(3404803..3406038) Stenotrophomonas maltophilia R551-3 6475949 YP_002029433.1 CDS Smal_3051 NC_011071.1 3406035 3407066 R catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA; homoserine O-acetyltransferase complement(3406035..3407066) Stenotrophomonas maltophilia R551-3 6475950 YP_002029434.1 CDS Smal_3052 NC_011071.1 3407412 3408305 D PFAM: Peptidase M23; KEGG: xfm:Xfasm12_1987 peptidase; peptidase M23 3407412..3408305 Stenotrophomonas maltophilia R551-3 6475951 YP_002029435.1 CDS prfC NC_011071.1 3408372 3409976 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3408372..3409976 Stenotrophomonas maltophilia R551-3 6475952 YP_002029436.1 CDS Smal_3054 NC_011071.1 3410149 3410793 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: xcv:XCV3180 hemolysin-III family membrane protein; hemolysin III family channel protein 3410149..3410793 Stenotrophomonas maltophilia R551-3 6475953 YP_002029437.1 CDS Smal_3055 NC_011071.1 3410873 3412846 D PFAM: AsmA family protein; KEGG: xcb:XC_1247 hypothetical protein; AsmA family protein 3410873..3412846 Stenotrophomonas maltophilia R551-3 6475954 YP_002029438.1 CDS Smal_3056 NC_011071.1 3413327 3413758 R PFAM: CBS domain containing protein; KEGG: xac:XAC3045 hypothetical protein; putative signal transduction protein complement(3413327..3413758) Stenotrophomonas maltophilia R551-3 6475955 YP_002029439.1 CDS Smal_3057 NC_011071.1 3413718 3414737 R PFAM: glycosyl transferase family 2; KEGG: xac:XAC3046 glucosyl transferase; family 2 glycosyl transferase complement(3413718..3414737) Stenotrophomonas maltophilia R551-3 6475956 YP_002029440.1 CDS mtgA NC_011071.1 3414794 3415543 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3414794..3415543) Stenotrophomonas maltophilia R551-3 6475957 YP_002029441.1 CDS Smal_3059 NC_011071.1 3415621 3416514 D PFAM: Hsp33 protein; KEGG: xac:XAC3048 heat shock protein; Hsp33 protein 3415621..3416514 Stenotrophomonas maltophilia R551-3 6475958 YP_002029442.1 CDS Smal_3060 NC_011071.1 3416631 3417476 D KEGG: xac:XAC3049 hypothetical protein; hypothetical protein 3416631..3417476 Stenotrophomonas maltophilia R551-3 6475959 YP_002029443.1 CDS Smal_3061 NC_011071.1 3417680 3420637 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3187 TonB-dependent outer membrane receptor; TonB-dependent receptor plug complement(3417680..3420637) Stenotrophomonas maltophilia R551-3 6475960 YP_002029444.1 CDS Smal_3062 NC_011071.1 3420868 3421467 R PFAM: regulatory protein TetR; KEGG: xom:XOO_1705 transcriptional regulator; TetR family transcriptional regulator complement(3420868..3421467) Stenotrophomonas maltophilia R551-3 6475961 YP_002029445.1 CDS Smal_3063 NC_011071.1 3421609 3422526 D PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV3189 putative hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 3421609..3422526 Stenotrophomonas maltophilia R551-3 6475962 YP_002029446.1 CDS fadE NC_011071.1 3422523 3425000 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3422523..3425000 Stenotrophomonas maltophilia R551-3 6475963 YP_002029447.1 CDS Smal_3065 NC_011071.1 3425077 3425544 D KEGG: xcb:XC_3798 hypothetical protein; hypothetical protein 3425077..3425544 Stenotrophomonas maltophilia R551-3 6475964 YP_002029448.1 CDS Smal_3066 NC_011071.1 3426125 3426475 R PFAM: protein of unknown function DUF1304; KEGG: xcb:XC_1237 hypothetical protein; hypothetical protein complement(3426125..3426475) Stenotrophomonas maltophilia R551-3 6475965 YP_002029449.1 CDS Smal_3067 NC_011071.1 3426554 3427879 R KEGG: xcv:XCV3192 hypothetical protein; hypothetical protein complement(3426554..3427879) Stenotrophomonas maltophilia R551-3 6475966 YP_002029450.1 CDS Smal_3068 NC_011071.1 3428166 3429566 D PFAM: beta-lactamase; KEGG: xcb:XC_1235 beta-lactamase; beta-lactamase 3428166..3429566 Stenotrophomonas maltophilia R551-3 6475967 YP_002029451.1 CDS Smal_3069 NC_011071.1 3429681 3430439 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: spe:Spro_0127 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3429681..3430439) Stenotrophomonas maltophilia R551-3 6475968 YP_002029452.1 CDS Smal_3070 NC_011071.1 3430554 3431468 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bcm:Bcenmc03_6395 transcriptional regulator, LysR family; LysR family transcriptional regulator 3430554..3431468 Stenotrophomonas maltophilia R551-3 6475969 YP_002029453.1 CDS Smal_3071 NC_011071.1 3431531 3432082 R KEGG: xom:XOO_1699 histone H1; histone H1 complement(3431531..3432082) Stenotrophomonas maltophilia R551-3 6475970 YP_002029454.1 CDS Smal_3072 NC_011071.1 3432858 3433253 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3432858..3433253) Stenotrophomonas maltophilia R551-3 6475971 YP_002029455.1 CDS gcvT NC_011071.1 3433347 3434459 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3433347..3434459) Stenotrophomonas maltophilia R551-3 6475972 YP_002029456.1 CDS Smal_3074 NC_011071.1 3434604 3435047 R PFAM: protein of unknown function DUF107; KEGG: xcb:XC_1231 hypothetical protein; hypothetical protein complement(3434604..3435047) Stenotrophomonas maltophilia R551-3 6475973 YP_002029457.1 CDS Smal_3075 NC_011071.1 3435049 3436008 R PFAM: band 7 protein; KEGG: xcb:XC_1230 hypothetical protein; hypothetical protein complement(3435049..3436008) Stenotrophomonas maltophilia R551-3 6475974 YP_002029458.1 CDS Smal_3076 NC_011071.1 3436075 3436377 R KEGG: bmn:BMA10247_0757 hypothetical protein; hypothetical protein complement(3436075..3436377) Stenotrophomonas maltophilia R551-3 6475975 YP_002029459.1 CDS Smal_3077 NC_011071.1 3436517 3436846 R PFAM: protein of unknown function UPF0060; KEGG: xac:XAC3064 hypothetical protein; hypothetical protein complement(3436517..3436846) Stenotrophomonas maltophilia R551-3 6475976 YP_002029460.1 CDS mazG NC_011071.1 3436843 3437682 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3436843..3437682) Stenotrophomonas maltophilia R551-3 6475977 YP_002029461.1 CDS Smal_3079 NC_011071.1 3437696 3438499 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: xac:XAC3066 sulfite synthesis pathway protein; 3'(2'),5'-bisphosphate nucleotidase complement(3437696..3438499) Stenotrophomonas maltophilia R551-3 6475978 YP_002029462.1 CDS nudE NC_011071.1 3438496 3439059 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3438496..3439059) Stenotrophomonas maltophilia R551-3 6475979 YP_002029463.1 CDS Smal_3081 NC_011071.1 3439137 3440528 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3439137..3440528 Stenotrophomonas maltophilia R551-3 6475980 YP_002029464.1 CDS Smal_3082 NC_011071.1 3440519 3441256 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3440519..3441256 Stenotrophomonas maltophilia R551-3 6475981 YP_002029465.1 CDS Smal_3083 NC_011071.1 3441356 3441820 R PFAM: CheW domain protein; KEGG: xac:XAC3096 hypothetical protein; CheW protein complement(3441356..3441820) Stenotrophomonas maltophilia R551-3 6475982 YP_002029466.1 CDS Smal_3084 NC_011071.1 3441817 3443151 R KEGG: xcv:XCV3228 hypothetical protein; hypothetical protein complement(3441817..3443151) Stenotrophomonas maltophilia R551-3 6475983 YP_002029467.1 CDS Smal_3085 NC_011071.1 3443138 3449776 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: xcc:XCC2921 PilL protein; CheA signal transduction histidine kinase complement(3443138..3449776) Stenotrophomonas maltophilia R551-3 6475984 YP_002029468.1 CDS Smal_3086 NC_011071.1 3449877 3451913 R PFAM: chemotaxis sensory transducer; KEGG: xcb:XC_1186 pilus biogenesis protein; methyl-accepting chemotaxis sensory transducer complement(3449877..3451913) Stenotrophomonas maltophilia R551-3 6475985 YP_002029469.1 CDS Smal_3087 NC_011071.1 3451955 3452485 R PFAM: CheW domain protein; KEGG: xcb:XC_1185 pilus biogenesis protein; CheW protein complement(3451955..3452485) Stenotrophomonas maltophilia R551-3 6475986 YP_002029470.1 CDS Smal_3088 NC_011071.1 3452485 3452847 R PFAM: response regulator receiver; KEGG: xcb:XC_1184 PilH protein; response regulator receiver protein complement(3452485..3452847) Stenotrophomonas maltophilia R551-3 6475987 YP_002029471.1 CDS Smal_3089 NC_011071.1 3452866 3453267 R PFAM: response regulator receiver; KEGG: xcb:XC_1183 pilus protein; response regulator receiver protein complement(3452866..3453267) Stenotrophomonas maltophilia R551-3 6475988 YP_002029472.1 CDS Smal_3090 NC_011071.1 3453508 3454455 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3453508..3454455 Stenotrophomonas maltophilia R551-3 6475989 YP_002029473.1 CDS Smal_3091 NC_011071.1 3454455 3455339 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xcb:XC_1181 TonB protein; TonB family protein 3454455..3455339 Stenotrophomonas maltophilia R551-3 6475990 YP_002029474.1 CDS Smal_3092 NC_011071.1 3455740 3456453 R PFAM: peptidase M22 glycoprotease; KEGG: xac:XAC3106 hypothetical protein; peptidase M22 glycoprotease complement(3455740..3456453) Stenotrophomonas maltophilia R551-3 6475991 YP_002029475.1 CDS Smal_3093 NC_011071.1 3456463 3458508 R SMART: helicase c2; KEGG: xcv:XCV3239 ATP-dependent helicase; helicase c2 complement(3456463..3458508) Stenotrophomonas maltophilia R551-3 6475992 YP_002029476.1 CDS Smal_3094 NC_011071.1 3458736 3459269 R KEGG: xcb:XC_1177 hypothetical protein; hypothetical protein complement(3458736..3459269) Stenotrophomonas maltophilia R551-3 6475993 YP_002029477.1 CDS Smal_3095 NC_011071.1 3459269 3461710 R KEGG: xcv:XCV3241 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B complement(3459269..3461710) Stenotrophomonas maltophilia R551-3 6475994 YP_002029478.1 CDS Smal_3096 NC_011071.1 3461795 3462847 R PFAM: glycosyl transferase family 2; KEGG: lxx:Lxx05140 rhamnosyltransferase; family 2 glycosyl transferase complement(3461795..3462847) Stenotrophomonas maltophilia R551-3 6475995 YP_002029479.1 CDS Smal_3097 NC_011071.1 3462920 3463870 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: xcb:XC_0461 hypothetical protein; NAD-dependent epimerase/dehydratase complement(3462920..3463870) Stenotrophomonas maltophilia R551-3 6475996 YP_002029480.1 CDS Smal_3098 NC_011071.1 3463876 3465447 R KEGG: xac:XAC3112 hypothetical protein; hypothetical protein complement(3463876..3465447) Stenotrophomonas maltophilia R551-3 6475997 YP_002029481.1 CDS Smal_3099 NC_011071.1 3465478 3467634 R KEGG: xoo:XOO1736 ATP:GTP 3'-pyrophosphotranferase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; RelA/SpoT domain protein; RelA/SpoT family protein complement(3465478..3467634) Stenotrophomonas maltophilia R551-3 6475998 YP_002029482.1 CDS Smal_3100 NC_011071.1 3467765 3468301 D KEGG: xac:XAC3118 hypothetical protein; hypothetical protein 3467765..3468301 Stenotrophomonas maltophilia R551-3 6475999 YP_002029483.1 CDS Smal_3101 NC_011071.1 3468344 3472426 R KEGG: xcb:XC_1164 ATP dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(3468344..3472426) Stenotrophomonas maltophilia R551-3 6476000 YP_002029484.1 CDS Smal_3102 NC_011071.1 3472513 3473061 D PFAM: Ferritin Dps family protein; KEGG: xac:XAC3123 DNA-binding related protein; ferritin Dps family protein 3472513..3473061 Stenotrophomonas maltophilia R551-3 6476001 YP_002029485.1 CDS Smal_3103 NC_011071.1 3473625 3475430 D KEGG: xac:XAC3124 DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 3473625..3475430 Stenotrophomonas maltophilia R551-3 6476002 YP_002029486.1 CDS Smal_3104 NC_011071.1 3475623 3476006 D KEGG: xcv:XCV3746 putative secreted protein; hypothetical protein 3475623..3476006 Stenotrophomonas maltophilia R551-3 6476003 YP_002029487.1 CDS Smal_3105 NC_011071.1 3476082 3477884 D TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: xom:XOO_0686 copper resistance protein A precursor; CopA family copper-resistance protein 3476082..3477884 Stenotrophomonas maltophilia R551-3 6476004 YP_002029488.1 CDS Smal_3106 NC_011071.1 3477881 3478906 D PFAM: copper resistance B precursor; KEGG: ppu:PP_5379 copper resistance protein B; copper resistance B 3477881..3478906 Stenotrophomonas maltophilia R551-3 6476005 YP_002029489.1 CDS Smal_3107 NC_011071.1 3478990 3479502 D PFAM: GCN5-related N-acetyltransferase; KEGG: xom:XOO_1541 acetyltransferase; N-acetyltransferase GCN5 3478990..3479502 Stenotrophomonas maltophilia R551-3 6476006 YP_002029490.1 CDS Smal_3108 NC_011071.1 3479546 3479866 R KEGG: cff:CFF8240_1283 hypothetical protein; hypothetical protein complement(3479546..3479866) Stenotrophomonas maltophilia R551-3 6476007 YP_002029491.1 CDS Smal_3109 NC_011071.1 3480016 3480783 D PFAM: Abortive infection protein; KEGG: xcb:XC_3203 hypothetical protein; abortive infection protein 3480016..3480783 Stenotrophomonas maltophilia R551-3 6476008 YP_002029492.1 CDS Smal_3110 NC_011071.1 3480878 3481303 D PFAM: response regulator receiver; KEGG: bra:BRADO2087 putative sensor histidine kinase with a response regulator receiver domain; response regulator receiver protein 3480878..3481303 Stenotrophomonas maltophilia R551-3 6476009 YP_002029493.1 CDS Smal_3111 NC_011071.1 3481341 3482279 R PFAM: putative esterase; KEGG: bur:Bcep18194_A4870 putative esterase; putative esterase complement(3481341..3482279) Stenotrophomonas maltophilia R551-3 6476010 YP_002029494.1 CDS Smal_3112 NC_011071.1 3482364 3483206 R PFAM: putative esterase; KEGG: ccr:CC_0341 hypothetical protein; putative esterase complement(3482364..3483206) Stenotrophomonas maltophilia R551-3 6476011 YP_002029495.1 CDS Smal_3113 NC_011071.1 3483380 3483718 D hypothetical protein 3483380..3483718 Stenotrophomonas maltophilia R551-3 6476012 YP_002029496.1 CDS Smal_3114 NC_011071.1 3484046 3485002 D KEGG: gfo:GFO_0920 secreted protein; hypothetical protein 3484046..3485002 Stenotrophomonas maltophilia R551-3 6476014 YP_002029497.1 CDS Smal_3115 NC_011071.1 3485205 3485870 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: xcb:XC_1145 transcriptional regulator; exsB protein complement(3485205..3485870) Stenotrophomonas maltophilia R551-3 6476015 YP_002029498.1 CDS Smal_3116 NC_011071.1 3485948 3486649 R PFAM: Radical SAM domain protein; KEGG: xcv:XCV3269 putative radical activating enzyme; radical SAM protein complement(3485948..3486649) Stenotrophomonas maltophilia R551-3 6476016 YP_002029499.1 CDS Smal_3117 NC_011071.1 3486887 3487705 R TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: xcv:XCV3270 putative secreted protein; tol-pal system protein YbgF complement(3486887..3487705) Stenotrophomonas maltophilia R551-3 6476017 YP_002029500.1 CDS Smal_3118 NC_011071.1 3487709 3488227 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: xcv:XCV3271 PAL family outer membrane lipoprotein; peptidoglycan-associated lipoprotein complement(3487709..3488227) Stenotrophomonas maltophilia R551-3 6476018 YP_002029501.1 CDS tolB NC_011071.1 3488292 3489611 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3488292..3489611) Stenotrophomonas maltophilia R551-3 6476019 YP_002029502.1 CDS Smal_3120 NC_011071.1 3489908 3490963 R TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: xac:XAC3143 TolA protein; protein TolA complement(3489908..3490963) Stenotrophomonas maltophilia R551-3 6476020 YP_002029503.1 CDS Smal_3121 NC_011071.1 3490953 3491381 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xac:XAC3144 TolR protein; protein TolR complement(3490953..3491381) Stenotrophomonas maltophilia R551-3 6476021 YP_002029504.1 CDS Smal_3122 NC_011071.1 3491406 3492185 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: xac:XAC3145 TolQ protein; protein TolQ complement(3491406..3492185) Stenotrophomonas maltophilia R551-3 6476022 YP_002029505.1 CDS Smal_3123 NC_011071.1 3492196 3492627 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: xac:XAC3146 hypothetical protein; tol-pal system-associated acyl-CoA thioesterase complement(3492196..3492627) Stenotrophomonas maltophilia R551-3 6476023 YP_002029506.1 CDS ruvB NC_011071.1 3492617 3493657 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3492617..3493657) Stenotrophomonas maltophilia R551-3 6476024 YP_002029507.1 CDS Smal_3125 NC_011071.1 3493785 3495704 R PFAM: K potassium transporter; KEGG: xcb:XC_1134 potassium uptake protein; K potassium transporter complement(3493785..3495704) Stenotrophomonas maltophilia R551-3 6476025 YP_002029508.1 CDS ruvA NC_011071.1 3495754 3496347 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(3495754..3496347) Stenotrophomonas maltophilia R551-3 6476026 YP_002029509.1 CDS ruvC NC_011071.1 3496361 3496882 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(3496361..3496882) Stenotrophomonas maltophilia R551-3 6476027 YP_002029510.1 CDS Smal_3128 NC_011071.1 3497012 3497743 R PFAM: protein of unknown function DUF28; KEGG: xcb:XC_1131 hypothetical protein; hypothetical protein complement(3497012..3497743) Stenotrophomonas maltophilia R551-3 6476028 YP_002029511.1 CDS Smal_3129 NC_011071.1 3497906 3498538 R PFAM: PGAP1 family protein; KEGG: xcv:XCV3283 hypothetical protein; PGAP1 family protein complement(3497906..3498538) Stenotrophomonas maltophilia R551-3 6476029 YP_002029512.1 CDS Smal_3130 NC_011071.1 3498614 3499135 R PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3153 acetyltransferase; N-acetyltransferase GCN5 complement(3498614..3499135) Stenotrophomonas maltophilia R551-3 6476030 YP_002029513.1 CDS Smal_3131 NC_011071.1 3499168 3499500 R KEGG: mdo:100012176 hypothetical protein LOC100012176; hypothetical protein complement(3499168..3499500) Stenotrophomonas maltophilia R551-3 6476102 YP_002029514.1 CDS aspS NC_011071.1 3499517 3501268 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3499517..3501268) Stenotrophomonas maltophilia R551-3 6476103 YP_002029515.1 CDS Smal_3133 NC_011071.1 3501427 3502170 D KEGG: xac:XAC3155 hypothetical protein; hypothetical protein 3501427..3502170 Stenotrophomonas maltophilia R551-3 6476104 YP_002029516.1 CDS Smal_3134 NC_011071.1 3502281 3502922 R KEGG: xcc:XCC3032 hypothetical protein; hypothetical protein complement(3502281..3502922) Stenotrophomonas maltophilia R551-3 6476105 YP_002029517.1 CDS Smal_3135 NC_011071.1 3502976 3504190 R PFAM: sodium/hydrogen exchanger; KEGG: xfa:XF1398 Na+/H+ exchange protein; sodium/hydrogen exchanger complement(3502976..3504190) Stenotrophomonas maltophilia R551-3 6476106 YP_002029518.1 CDS Smal_3136 NC_011071.1 3504276 3505187 R PFAM: beta-lactamase; KEGG: xcv:XCV3293 beta-lactamase precursor; beta-lactamase complement(3504276..3505187) Stenotrophomonas maltophilia R551-3 6476107 YP_002029519.1 CDS Smal_3137 NC_011071.1 3505365 3506228 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3294 transcriptional regulator, LysR family; LysR family transcriptional regulator 3505365..3506228 Stenotrophomonas maltophilia R551-3 6476108 YP_002029520.1 CDS Smal_3138 NC_011071.1 3506321 3508186 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC3165 ABC transporter ATP-binding protein; ABC transporter-like protein complement(3506321..3508186) Stenotrophomonas maltophilia R551-3 6476109 YP_002029521.1 CDS Smal_3139 NC_011071.1 3508523 3510910 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfn:XfasM23_1277 TonB-dependent receptor; TonB-dependent receptor 3508523..3510910 Stenotrophomonas maltophilia R551-3 6476110 YP_002029522.1 CDS Smal_3140 NC_011071.1 3511080 3512780 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xcb:XC_1110 cation:proton antiporter; potassium efflux system protein 3511080..3512780 Stenotrophomonas maltophilia R551-3 6476111 YP_002029523.1 CDS Smal_3141 NC_011071.1 3513274 3514560 R KEGG: xcb:XC_1090 homocysteine synthase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(3513274..3514560) Stenotrophomonas maltophilia R551-3 6476112 YP_002029524.1 CDS Smal_3142 NC_011071.1 3514742 3515479 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pap:PSPA7_3498 probable two-component response regulator; winged helix family two component transcriptional regulator 3514742..3515479 Stenotrophomonas maltophilia R551-3 6476113 YP_002029525.1 CDS Smal_3143 NC_011071.1 3515476 3516765 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pau:PA14_41270 putative two-component sensor; integral membrane sensor signal transduction histidine kinase 3515476..3516765 Stenotrophomonas maltophilia R551-3 6476114 YP_002029526.1 CDS Smal_3144 NC_011071.1 3516906 3517706 D PFAM: MltA-interacting MipA family protein; KEGG: pap:PSPA7_3501 MltA-interacting protein MipA; MltA-interacting MipA family protein 3516906..3517706 Stenotrophomonas maltophilia R551-3 6476115 YP_002029527.1 CDS Smal_3145 NC_011071.1 3517779 3520364 R KEGG: xcv:XCV3324 ATP-dependent Clp protease subunit; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(3517779..3520364) Stenotrophomonas maltophilia R551-3 6476116 YP_002029528.1 CDS Smal_3146 NC_011071.1 3520546 3521367 R KEGG: xcb:XC_1084 hypothetical protein; hypothetical protein complement(3520546..3521367) Stenotrophomonas maltophilia R551-3 6476117 YP_002029529.1 CDS Smal_3147 NC_011071.1 3521538 3522248 D KEGG: xcb:XC_1085 glutathione transferase; glutathione transferase 3521538..3522248 Stenotrophomonas maltophilia R551-3 6476118 YP_002029530.1 CDS Smal_3148 NC_011071.1 3522308 3523915 R PFAM: sulphate transporter; KEGG: xcv:XCV3330 putative permease; sulfate transporter complement(3522308..3523915) Stenotrophomonas maltophilia R551-3 6476119 YP_002029531.1 CDS Smal_3149 NC_011071.1 3524661 3526379 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pae:PA5297 pyruvate dehydrogenase (cytochrome); thiamine pyrophosphate domain-containing TPP-binding protein complement(3524661..3526379) Stenotrophomonas maltophilia R551-3 6476120 YP_002029532.1 CDS Smal_3150 NC_011071.1 3526509 3527366 R KEGG: bur:Bcep18194_B2775 hypothetical protein; hypothetical protein complement(3526509..3527366) Stenotrophomonas maltophilia R551-3 6476121 YP_002029533.1 CDS Smal_3151 NC_011071.1 3527403 3527885 R KEGG: xcv:XCV3332 putative secreted protein; hypothetical protein complement(3527403..3527885) Stenotrophomonas maltophilia R551-3 6476122 YP_002029534.1 CDS Smal_3152 NC_011071.1 3528101 3530536 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcb:XC_1079 ferric enterobactin receptor; TonB-dependent receptor 3528101..3530536 Stenotrophomonas maltophilia R551-3 6476123 YP_002029535.1 CDS Smal_3153 NC_011071.1 3531108 3531866 D KEGG: xac:XAC3209 trehalose-6-phosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase type 3; HAD-superfamily hydrolase 3531108..3531866 Stenotrophomonas maltophilia R551-3 6476124 YP_002029536.1 CDS Smal_3154 NC_011071.1 3531908 3533689 D PFAM: glycoside hydrolase 15-related; KEGG: xcv:XCV3335 putative glycosyl hydrolase; glycoside hydrolase-like protein 3531908..3533689 Stenotrophomonas maltophilia R551-3 6476125 YP_002029537.1 CDS Smal_3155 NC_011071.1 3533686 3535050 D KEGG: xcb:XC_1076 trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 3533686..3535050 Stenotrophomonas maltophilia R551-3 6476126 YP_002029538.1 CDS Smal_3156 NC_011071.1 3535123 3535560 R PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: xcv:XCV3339 hypothetical protein; putative thiol-disulfide oxidoreductase DCC complement(3535123..3535560) Stenotrophomonas maltophilia R551-3 6476127 YP_002029539.1 CDS Smal_3157 NC_011071.1 3535535 3536059 R KEGG: xcv:XCV3340 hypothetical protein; hypothetical protein complement(3535535..3536059) Stenotrophomonas maltophilia R551-3 6476128 YP_002029540.1 CDS Smal_3158 NC_011071.1 3536062 3536832 R PFAM: protein of unknown function DUF152; KEGG: xcv:XCV3341 hypothetical protein; hypothetical protein complement(3536062..3536832) Stenotrophomonas maltophilia R551-3 6476129 YP_002029541.1 CDS Smal_3159 NC_011071.1 3536832 3537821 R KEGG: xcb:XC_1070 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3536832..3537821) Stenotrophomonas maltophilia R551-3 6476130 YP_002029542.1 CDS Smal_3160 NC_011071.1 3537953 3538822 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: xac:XAC3218 competence lipoprotein; outer membrane assembly lipoprotein YfiO 3537953..3538822 Stenotrophomonas maltophilia R551-3 6476131 YP_002029543.1 CDS Smal_3161 NC_011071.1 3539022 3540224 D KEGG: rha:RHA1_ro02500 hypothetical protein; hypothetical protein 3539022..3540224 Stenotrophomonas maltophilia R551-3 6476132 YP_002029544.1 CDS Smal_3162 NC_011071.1 3540317 3541951 R NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(3540317..3541951) Stenotrophomonas maltophilia R551-3 6476133 YP_002029545.1 CDS Smal_3163 NC_011071.1 3542173 3543048 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3542173..3543048) Stenotrophomonas maltophilia R551-3 6476134 YP_002029546.1 CDS sucC NC_011071.1 3543069 3544238 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3543069..3544238) Stenotrophomonas maltophilia R551-3 6476135 YP_002029547.1 CDS Smal_3165 NC_011071.1 3544450 3546228 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xac:XAC3237 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 3544450..3546228 Stenotrophomonas maltophilia R551-3 6476136 YP_002029548.1 CDS Smal_3166 NC_011071.1 3546289 3547662 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: xcb:XC_1061 two-component system regulatory protein; two component sigma54 specific Fis family transcriptional regulator 3546289..3547662 Stenotrophomonas maltophilia R551-3 6476137 YP_002029549.1 CDS Smal_3167 NC_011071.1 3547895 3549628 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: xac:XAC3239 pilus biogenesis protein; type IV-A pilus assembly ATPase PilB complement(3547895..3549628) Stenotrophomonas maltophilia R551-3 6476138 YP_002029550.1 CDS Smal_3168 NC_011071.1 3549946 3550845 D PFAM: glycosyl transferase family 2; KEGG: hch:HCH_05273 glycosyltransferase involved in cell wall biogenesis; family 2 glycosyl transferase 3549946..3550845 Stenotrophomonas maltophilia R551-3 6476139 YP_002029551.1 CDS Smal_3169 NC_011071.1 3550842 3552071 D PFAM: glycosyl transferase group 1; KEGG: sat:SYN_00817 glycosyltransferase; group 1 glycosyl transferase 3550842..3552071 Stenotrophomonas maltophilia R551-3 6476140 YP_002029552.1 CDS Smal_3170 NC_011071.1 3552061 3553308 D PFAM: polysaccharide biosynthesis protein; KEGG: aba:Acid345_2586 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3552061..3553308 Stenotrophomonas maltophilia R551-3 6476141 YP_002029553.1 CDS Smal_3171 NC_011071.1 3553274 3554386 R PFAM: glycosyl transferase group 1; KEGG: csa:Csal_1715 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3553274..3554386) Stenotrophomonas maltophilia R551-3 6476142 YP_002029554.1 CDS Smal_3172 NC_011071.1 3554383 3555270 R TIGRFAM: methyltransferase FkbM family; KEGG: met:M446_4823 methyltransferase FkbM family; FkbM family methyltransferase complement(3554383..3555270) Stenotrophomonas maltophilia R551-3 6476143 YP_002029555.1 CDS Smal_3173 NC_011071.1 3555353 3556465 D PFAM: glycosyl transferase group 1; KEGG: scl:sce1025 glycosyltransferase; group 1 glycosyl transferase 3555353..3556465 Stenotrophomonas maltophilia R551-3 6476144 YP_002029556.1 CDS Smal_3174 NC_011071.1 3556459 3558363 R KEGG: dol:Dole_1411 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(3556459..3558363) Stenotrophomonas maltophilia R551-3 6476145 YP_002029557.1 CDS Smal_3175 NC_011071.1 3558363 3558767 R PFAM: Fimbrial protein pilin; KEGG: xft:PD1924 fimbrial protein; fimbrial protein pilin complement(3558363..3558767) Stenotrophomonas maltophilia R551-3 6476146 YP_002029558.1 CDS Smal_3176 NC_011071.1 3558863 3559276 R PFAM: Fimbrial protein pilin; KEGG: xac:XAC3241 fimbrillin; fimbrial protein pilin complement(3558863..3559276) Stenotrophomonas maltophilia R551-3 6476147 YP_002029559.1 CDS Smal_3177 NC_011071.1 3559631 3560890 D PFAM: type II secretion system protein; KEGG: xcv:XCV3354 fimbrial assembly protein; type II secretion system protein 3559631..3560890 Stenotrophomonas maltophilia R551-3 6476148 YP_002029560.1 CDS Smal_3178 NC_011071.1 3560898 3561761 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: xcb:XC_1056 type IV pre-pilin leader peptidase; prepilin peptidase 3560898..3561761 Stenotrophomonas maltophilia R551-3 6476149 YP_002029561.1 CDS coaE NC_011071.1 3561773 3562384 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3561773..3562384 Stenotrophomonas maltophilia R551-3 6476150 YP_002029562.1 CDS Smal_3180 NC_011071.1 3562561 3563928 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xcv:XCV3364 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase complement(3562561..3563928) Stenotrophomonas maltophilia R551-3 6476151 YP_002029563.1 CDS Smal_3181 NC_011071.1 3563891 3564568 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xac:XAC3250 two-component system regulatory protein; winged helix family two component transcriptional regulator complement(3563891..3564568) Stenotrophomonas maltophilia R551-3 6476152 YP_002029564.1 CDS Smal_3182 NC_011071.1 3564577 3565047 R KEGG: xac:XAC3251 hypothetical protein; hypothetical protein complement(3564577..3565047) Stenotrophomonas maltophilia R551-3 6476153 YP_002029565.1 CDS Smal_3183 NC_011071.1 3565137 3565613 R KEGG: xcv:XCV3366 putative secreted protein; hypothetical protein complement(3565137..3565613) Stenotrophomonas maltophilia R551-3 6476154 YP_002029566.1 CDS Smal_3184 NC_011071.1 3565859 3566737 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: xcb:XC_1048 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(3565859..3566737) Stenotrophomonas maltophilia R551-3 6476155 YP_002029567.1 CDS Smal_3185 NC_011071.1 3566869 3567291 D PFAM: thioesterase superfamily protein; KEGG: abo:ABO_0293 hypothetical protein; thioesterase superfamily protein 3566869..3567291 Stenotrophomonas maltophilia R551-3 6476156 YP_002029568.1 CDS Smal_3186 NC_011071.1 3567417 3568598 R hypothetical protein complement(3567417..3568598) Stenotrophomonas maltophilia R551-3 6476157 YP_002029569.1 CDS Smal_3187 NC_011071.1 3568638 3569042 R PFAM: protein of unknown function DUF805; KEGG: nar:Saro_1149 protein of unknown function DUF805; hypothetical protein complement(3568638..3569042) Stenotrophomonas maltophilia R551-3 6476158 YP_002029570.1 CDS Smal_3188 NC_011071.1 3569474 3571327 R KEGG: xom:XOO_3175 lipase; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein complement(3569474..3571327) Stenotrophomonas maltophilia R551-3 6476160 YP_002029571.1 CDS Smal_3189 NC_011071.1 3571535 3571735 D with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 3571535..3571735 Stenotrophomonas maltophilia R551-3 6476161 YP_002029572.1 CDS Smal_3190 NC_011071.1 3571867 3572661 D PFAM: thiazole biosynthesis family protein; KEGG: xcb:XC_1015 thiazole synthase; thiazole biosynthesis family protein 3571867..3572661 Stenotrophomonas maltophilia R551-3 6476162 YP_002029573.1 CDS trmB NC_011071.1 3572661 3573395 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3572661..3573395 Stenotrophomonas maltophilia R551-3 6476163 YP_002029574.1 CDS Smal_3192 NC_011071.1 3573423 3575270 D PFAM: Citrate transporter; TrkA-C domain protein; KEGG: xac:XAC3304 sulfur deprivation response regulator; TrkA-C domain-containing protein 3573423..3575270 Stenotrophomonas maltophilia R551-3 6476164 YP_002029575.1 CDS Smal_3193 NC_011071.1 3575390 3575725 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: xcv:XCV3420 putative Rieske 2Fe-2S family protein; Rieske (2Fe-2S) domain-containing protein complement(3575390..3575725) Stenotrophomonas maltophilia R551-3 6476165 YP_002029576.1 CDS Smal_3194 NC_011071.1 3575904 3576185 D KEGG: xac:XAC3306 hypothetical protein; hypothetical protein 3575904..3576185 Stenotrophomonas maltophilia R551-3 6476166 YP_002029577.1 CDS Smal_3195 NC_011071.1 3576261 3576977 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: xac:XAC3307 fumarylacetoacetate hydrolase; fumarylacetoacetate (FAA) hydrolase 3576261..3576977 Stenotrophomonas maltophilia R551-3 6476167 YP_002029578.1 CDS mscL NC_011071.1 3577033 3577437 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3577033..3577437 Stenotrophomonas maltophilia R551-3 6476168 YP_002029579.1 CDS Smal_3197 NC_011071.1 3577662 3579083 D PFAM: peptidase M20; peptidase M28; KEGG: xac:XAC3309 aminopeptidase; peptidase M28 3577662..3579083 Stenotrophomonas maltophilia R551-3 6476169 YP_002029580.1 CDS Smal_3198 NC_011071.1 3579230 3580681 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: eba:ebA3983 putative sodium/alanine symporter family protein; amino acid carrier protein complement(3579230..3580681) Stenotrophomonas maltophilia R551-3 6476170 YP_002029581.1 CDS Smal_3199 NC_011071.1 3580692 3581684 R KEGG: cak:Caul_4070 hypothetical protein; hypothetical protein complement(3580692..3581684) Stenotrophomonas maltophilia R551-3 6476171 YP_002029582.1 CDS Smal_3200 NC_011071.1 3581922 3582758 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: xcc:XCC3165 tRNA/rRNA methyltransferase; TrmH family RNA methyltransferase complement(3581922..3582758) Stenotrophomonas maltophilia R551-3 6476172 YP_002029583.1 CDS Smal_3201 NC_011071.1 3582751 3584268 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: xcb:XC_0999 sodium/proton-dependent alanine carrier protein; amino acid carrier protein complement(3582751..3584268) Stenotrophomonas maltophilia R551-3 6476255 YP_002029584.1 CDS Smal_3202 NC_011071.1 3584447 3585031 R PFAM: GCN5-related N-acetyltransferase; KEGG: xac:XAC3317 acetyltransferase; N-acetyltransferase GCN5 complement(3584447..3585031) Stenotrophomonas maltophilia R551-3 6476256 YP_002029585.1 CDS Smal_3203 NC_011071.1 3585024 3588149 R PFAM: acriflavin resistance protein; KEGG: xcb:XC_0996 acriflavin resistance protein; acriflavin resistance protein complement(3585024..3588149) Stenotrophomonas maltophilia R551-3 6476257 YP_002029586.1 CDS Smal_3204 NC_011071.1 3588146 3589252 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3444 membrane fusion protein; RND family efflux transporter MFP subunit complement(3588146..3589252) Stenotrophomonas maltophilia R551-3 6476258 YP_002029587.1 CDS Smal_3205 NC_011071.1 3589525 3591588 R TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0648 TonB-dependent copper receptor; TonB-dependent copper receptor complement(3589525..3591588) Stenotrophomonas maltophilia R551-3 6476259 YP_002029588.1 CDS Smal_3206 NC_011071.1 3591661 3592092 R KEGG: xcv:XCV3452 putative secreted protein; hypothetical protein complement(3591661..3592092) Stenotrophomonas maltophilia R551-3 6476260 YP_002029589.1 CDS Smal_3207 NC_011071.1 3592332 3592853 D PFAM: transposase IS3/IS911 family protein; KEGG: bmu:Bmul_5560 HMG-I and HMG-Y DNA-binding domain protein; transposase IS3/IS911 family protein 3592332..3592853 Stenotrophomonas maltophilia R551-3 6476261 YP_002029590.1 CDS Smal_3208 NC_011071.1 3592850 3593683 D PFAM: Integrase catalytic region; KEGG: bpl:BURPS1106A_1714 transposase and inactivated derivatives; integrase catalytic subunit 3592850..3593683 Stenotrophomonas maltophilia R551-3 6476262 YP_002029591.1 CDS Smal_3209 NC_011071.1 3594159 3595142 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcv:XCV3457 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein complement(3594159..3595142) Stenotrophomonas maltophilia R551-3 6476263 YP_002029592.1 CDS Smal_3210 NC_011071.1 3595350 3596309 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xom:XOO_3209 cysteine synthase; cysteine synthase A 3595350..3596309 Stenotrophomonas maltophilia R551-3 6476264 YP_002029593.1 CDS Smal_3211 NC_011071.1 3596602 3597201 D PFAM: Appr-1-p processing domain protein; KEGG: xcv:XCV3461 hypothetical protein; hypothetical protein 3596602..3597201 Stenotrophomonas maltophilia R551-3 6476265 YP_002029594.1 CDS Smal_3212 NC_011071.1 3597293 3598441 R KEGG: sus:Acid_5510 peptidase domain protein; hypothetical protein complement(3597293..3598441) Stenotrophomonas maltophilia R551-3 6476266 YP_002029595.1 CDS Smal_3213 NC_011071.1 3598571 3599575 R PFAM: fructose-bisphosphate aldolase class-I; KEGG: xcb:XC_0979 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase complement(3598571..3599575) Stenotrophomonas maltophilia R551-3 6476267 YP_002029596.1 CDS Smal_3214 NC_011071.1 3599772 3601238 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(3599772..3601238) Stenotrophomonas maltophilia R551-3 6476268 YP_002029597.1 CDS Smal_3215 NC_011071.1 3601453 3602106 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xom:XOO_3214 indigoidine synthesis-like protein; HAD-superfamily hydrolase complement(3601453..3602106) Stenotrophomonas maltophilia R551-3 6476269 YP_002029598.1 CDS pgk NC_011071.1 3602103 3603278 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3602103..3603278) Stenotrophomonas maltophilia R551-3 6476270 YP_002029599.1 CDS Smal_3217 NC_011071.1 3604004 3605380 R KEGG: xcv:XCV3466 hypothetical protein; hypothetical protein complement(3604004..3605380) Stenotrophomonas maltophilia R551-3 6476271 YP_002029600.1 CDS Smal_3218 NC_011071.1 3605377 3608052 R KEGG: xcb:XC_0974 hypothetical protein; hypothetical protein complement(3605377..3608052) Stenotrophomonas maltophilia R551-3 6476272 YP_002029601.1 CDS Smal_3219 NC_011071.1 3608178 3609182 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: xac:XAC3352 glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(3608178..3609182) Stenotrophomonas maltophilia R551-3 6476273 YP_002029602.1 CDS Smal_3220 NC_011071.1 3609376 3610005 D PFAM: OmpW family protein; KEGG: xcb:XC_0970 outer membrane protein; OmpW family protein 3609376..3610005 Stenotrophomonas maltophilia R551-3 6476274 YP_002029603.1 CDS Smal_3221 NC_011071.1 3610572 3611390 D PFAM: S1/P1 nuclease; KEGG: xcb:XC_0908 endonuclease; S1/P1 nuclease 3610572..3611390 Stenotrophomonas maltophilia R551-3 6476275 YP_002029604.1 CDS Smal_3222 NC_011071.1 3611402 3612202 D PFAM: beta-lactamase domain protein; KEGG: xcb:XC_0907 beta-lactamase; beta-lactamase domain-containing protein 3611402..3612202 Stenotrophomonas maltophilia R551-3 6476276 YP_002029605.1 CDS Smal_3223 NC_011071.1 3612268 3612831 R KEGG: xcb:XC_0914 hypothetical protein; hypothetical protein complement(3612268..3612831) Stenotrophomonas maltophilia R551-3 6476277 YP_002029606.1 CDS Smal_3224 NC_011071.1 3612828 3614069 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: xom:XOO_1086 TonB-like protein; TonB family protein complement(3612828..3614069) Stenotrophomonas maltophilia R551-3 6476278 YP_002029607.1 CDS Smal_3225 NC_011071.1 3614062 3614427 R PFAM: Penicillinase repressor; KEGG: xac:XAC3363 transcriptional regulator BlaI family; CopY family transcriptional repressor complement(3614062..3614427) Stenotrophomonas maltophilia R551-3 6476279 YP_002029608.1 CDS Smal_3226 NC_011071.1 3614546 3615103 D PFAM: flavin reductase domain protein FMN-binding; KEGG: xcb:XC_0913 hypothetical protein; flavin reductase domain-containing protein 3614546..3615103 Stenotrophomonas maltophilia R551-3 6476280 YP_002029609.1 CDS Smal_3227 NC_011071.1 3615138 3617090 D KEGG: xcv:XCV3482 hypothetical protein; hypothetical protein 3615138..3617090 Stenotrophomonas maltophilia R551-3 6476281 YP_002029610.1 CDS Smal_3228 NC_011071.1 3617216 3619213 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3617216..3619213) Stenotrophomonas maltophilia R551-3 6476282 YP_002029611.1 CDS Smal_3229 NC_011071.1 3619551 3620870 R PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3373 proton glutamate symport protein; sodium:dicarboxylate symporter complement(3619551..3620870) Stenotrophomonas maltophilia R551-3 6476283 YP_002029612.1 CDS Smal_3230 NC_011071.1 3620928 3622643 R KEGG: xcv:XCV3492 hypothetical protein; hypothetical protein complement(3620928..3622643) Stenotrophomonas maltophilia R551-3 6476284 YP_002029613.1 CDS Smal_3231 NC_011071.1 3622640 3624478 R PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xcv:XCV3493 hypothetical protein; hypothetical protein complement(3622640..3624478) Stenotrophomonas maltophilia R551-3 6476285 YP_002029614.1 CDS Smal_3232 NC_011071.1 3624475 3625479 R PFAM: von Willebrand factor type A; KEGG: xcb:XC_0933 hypothetical protein; von Willebrand factor type A complement(3624475..3625479) Stenotrophomonas maltophilia R551-3 6476286 YP_002029615.1 CDS Smal_3233 NC_011071.1 3625476 3625925 R KEGG: xac:XAC3377 hypothetical protein; hypothetical protein complement(3625476..3625925) Stenotrophomonas maltophilia R551-3 6476287 YP_002029616.1 CDS Smal_3234 NC_011071.1 3625922 3626851 R PFAM: protein of unknown function DUF58; KEGG: xcv:XCV3495 hypothetical protein; hypothetical protein complement(3625922..3626851) Stenotrophomonas maltophilia R551-3 6476288 YP_002029617.1 CDS Smal_3235 NC_011071.1 3626860 3627930 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcb:XC_0936 methanol dehydrogenase regulatory protein; ATPase complement(3626860..3627930) Stenotrophomonas maltophilia R551-3 6476289 YP_002029618.1 CDS Smal_3236 NC_011071.1 3628076 3630049 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: xom:XOO_1058 fimbrial assembly protein; type IV pilus secretin PilQ complement(3628076..3630049) Stenotrophomonas maltophilia R551-3 6476290 YP_002029619.1 CDS Smal_3237 NC_011071.1 3630071 3630604 R PFAM: Pilus assembly protein PilP; KEGG: xac:XAC3382 fimbrial assembly protein; Pilus assembly protein PilP complement(3630071..3630604) Stenotrophomonas maltophilia R551-3 6476291 YP_002029620.1 CDS Smal_3238 NC_011071.1 3630601 3631257 R PFAM: Pilus assembly protein PilO; KEGG: xac:XAC3383 fimbrial assembly membrane protein; Pilus assembly protein PilO complement(3630601..3631257) Stenotrophomonas maltophilia R551-3 6476292 YP_002029621.1 CDS Smal_3239 NC_011071.1 3631254 3632126 R PFAM: Fimbrial assembly family protein; KEGG: xac:XAC3384 fimbrial assembly membrane protein; fimbrial assembly family protein complement(3631254..3632126) Stenotrophomonas maltophilia R551-3 6476293 YP_002029622.1 CDS Smal_3240 NC_011071.1 3632126 3633184 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: xcb:XC_0941 fimbrial assembly membrane protein; type IV pilus assembly protein PilM complement(3632126..3633184) Stenotrophomonas maltophilia R551-3 6476294 YP_002029623.1 CDS Smal_3241 NC_011071.1 3633404 3635827 D KEGG: xom:XOO_1053 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 3633404..3635827 Stenotrophomonas maltophilia R551-3 6476295 YP_002029624.1 CDS Smal_3242 NC_011071.1 3636123 3636767 D KEGG: xcb:XC_0943 hypothetical protein; hypothetical protein 3636123..3636767 Stenotrophomonas maltophilia R551-3 6476296 YP_002029625.1 CDS Smal_3243 NC_011071.1 3637160 3638125 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: ots:OTBS_1185 transposase and inactivated derivative; transposase IS116/IS110/IS902 family protein 3637160..3638125 Stenotrophomonas maltophilia R551-3 6476297 YP_002029626.1 CDS Smal_3244 NC_011071.1 3638273 3639022 R hypothetical protein complement(3638273..3639022) Stenotrophomonas maltophilia R551-3 6476298 YP_002029627.1 CDS Smal_3245 NC_011071.1 3639092 3644536 R PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: xac:XAC3546 outer membrane protein; hemagluttinin domain-containing protein complement(3639092..3644536) Stenotrophomonas maltophilia R551-3 6476299 YP_002029628.1 CDS Smal_3246 NC_011071.1 3644598 3645305 R KEGG: bac:BamMC406_6643 putative fimbrial protein; putative fimbrial protein complement(3644598..3645305) Stenotrophomonas maltophilia R551-3 6476300 YP_002029629.1 CDS Smal_3247 NC_011071.1 3645324 3646475 R PFAM: CblD family pilus biogenesis initiator protein; KEGG: bac:BamMC406_6646 CblD family pilus biogenesis initiator protein; CblD family pilus biogenesis initiator protein complement(3645324..3646475) Stenotrophomonas maltophilia R551-3 6476301 YP_002029630.1 CDS Smal_3248 NC_011071.1 3646472 3649204 R KEGG: spe:Spro_0215 outermembrane fimbrial usher protein; outermembrane fimbrial usher protein complement(3646472..3649204) Stenotrophomonas maltophilia R551-3 6476302 YP_002029631.1 CDS Smal_3249 NC_011071.1 3649266 3649766 R PFAM: CS1 type fimbrial major subunit; KEGG: spe:Spro_0216 CS1 type fimbrial major subunit; CS1 type fimbrial major subunit complement(3649266..3649766) Stenotrophomonas maltophilia R551-3 6476303 YP_002029632.1 CDS Smal_3250 NC_011071.1 3650221 3650319 R hypothetical protein complement(3650221..3650319) Stenotrophomonas maltophilia R551-3 6476304 YP_002029633.1 CDS Smal_3251 NC_011071.1 3650363 3651121 R PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B1862 alpha/beta hydrolase; alpha/beta hydrolase fold domain-containing protein complement(3650363..3651121) Stenotrophomonas maltophilia R551-3 6476305 YP_002029634.1 CDS Smal_3252 NC_011071.1 3651215 3651988 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bcn:Bcen_4197 transcriptional regulator, AraC family; AraC family transcriptional regulator 3651215..3651988 Stenotrophomonas maltophilia R551-3 6476306 YP_002029635.1 CDS gltA NC_011071.1 3652137 3653414 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(3652137..3653414) Stenotrophomonas maltophilia R551-3 6476307 YP_002029636.1 CDS rpmE2 NC_011071.1 3653711 3653953 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(3653711..3653953) Stenotrophomonas maltophilia R551-3 6476308 YP_002029637.1 CDS Smal_3255 NC_011071.1 3654041 3654979 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: xcb:XC_0946 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(3654041..3654979) Stenotrophomonas maltophilia R551-3 6476309 YP_002029638.1 CDS Smal_3256 NC_011071.1 3655521 3657632 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(3655521..3657632) Stenotrophomonas maltophilia R551-3 6476310 YP_002029639.1 CDS Smal_3257 NC_011071.1 3657640 3658026 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: xcb:XC_0948 translation initiation inhibitor; endoribonuclease L-PSP complement(3657640..3658026) Stenotrophomonas maltophilia R551-3 6476311 YP_002029640.1 CDS Smal_3258 NC_011071.1 3658359 3660521 R KEGG: xcb:XC_0956 pentaphosphate guanosine-3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(3658359..3660521) Stenotrophomonas maltophilia R551-3 6476312 YP_002029641.1 CDS Smal_3259 NC_011071.1 3660628 3660927 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(3660628..3660927) Stenotrophomonas maltophilia R551-3 6476313 YP_002029642.1 CDS gmk NC_011071.1 3661038 3661703 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(3661038..3661703) Stenotrophomonas maltophilia R551-3 6476314 YP_002029643.1 CDS Smal_3261 NC_011071.1 3661995 3665063 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: bav:BAV3142 formate dehydrogenase, major subunit; formate dehydrogenase subunit alpha 3661995..3665063 Stenotrophomonas maltophilia R551-3 6476315 YP_002029644.1 CDS Smal_3262 NC_011071.1 3665074 3665991 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: bav:BAV3144 nformate dehydrogenase, iron-sulfur subunit; formate dehydrogenase subunit beta 3665074..3665991 Stenotrophomonas maltophilia R551-3 6476316 YP_002029645.1 CDS Smal_3263 NC_011071.1 3665988 3666635 D TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: bmu:Bmul_4595 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 3665988..3666635 Stenotrophomonas maltophilia R551-3 6476317 YP_002029646.1 CDS Smal_3264 NC_011071.1 3667029 3668012 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: bmn:BMA10247_A0574 formate dehydrogenase accessory protein; formate dehydrogenase accessory protein FdhE 3667029..3668012 Stenotrophomonas maltophilia R551-3 6476318 YP_002029647.1 CDS Smal_3265 NC_011071.1 3668016 3669440 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; L-seryl-tRNA selenium transferase; KEGG: bav:BAV3147 selenocysteinyl-tRNA(SeC) synthase; L-seryl-tRNA(Sec) selenium transferase 3668016..3669440 Stenotrophomonas maltophilia R551-3 6476319 YP_002029648.1 CDS Smal_3266 NC_011071.1 3669437 3671368 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: bph:Bphy_4523 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 3669437..3671368 Stenotrophomonas maltophilia R551-3 6476320 YP_002029649.1 CDS Smal_3267 NC_011071.1 3671515 3672594 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bml:BMA10229_2135 selenophosphate synthetase; selenide, water dikinase 3671515..3672594 Stenotrophomonas maltophilia R551-3 6476322 YP_002029650.1 CDS Smal_3268 NC_011071.1 3672777 3673922 D PFAM: filamentation induced by cAMP protein Fic; KEGG: neu:NE2119 hypothetical protein; filamentation induced by cAMP protein fic 3672777..3673922 Stenotrophomonas maltophilia R551-3 6476323 YP_002029651.1 CDS Smal_3269 NC_011071.1 3674074 3674934 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: xcb:XC_0959 hypothetical protein; hypothetical protein complement(3674074..3674934) Stenotrophomonas maltophilia R551-3 6476324 YP_002029652.1 CDS rph NC_011071.1 3675059 3675784 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3675059..3675784 Stenotrophomonas maltophilia R551-3 6476325 YP_002029653.1 CDS Smal_3271 NC_011071.1 3675781 3676170 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3737 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3675781..3676170 Stenotrophomonas maltophilia R551-3 6476326 YP_002029654.1 CDS Smal_3272 NC_011071.1 3676167 3676763 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3676167..3676763 Stenotrophomonas maltophilia R551-3 6476327 YP_002029655.1 CDS Smal_3273 NC_011071.1 3676820 3678046 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3676820..3678046 Stenotrophomonas maltophilia R551-3 6476328 YP_002029656.1 CDS Smal_3274 NC_011071.1 3678250 3680532 D PFAM: protein of unknown function DUF1631; KEGG: xcb:XC_0964 hypothetical protein; hypothetical protein 3678250..3680532 Stenotrophomonas maltophilia R551-3 6476329 YP_002029657.1 CDS Smal_3275 NC_011071.1 3680529 3680903 D PFAM: type IV pilus assembly PilZ; KEGG: xcb:XC_0965 hypothetical protein; type IV pilus assembly PilZ 3680529..3680903 Stenotrophomonas maltophilia R551-3 6476330 YP_002029658.1 CDS Smal_3276 NC_011071.1 3680979 3682310 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 3680979..3682310 Stenotrophomonas maltophilia R551-3 6476331 YP_002029659.1 CDS Smal_3277 NC_011071.1 3682532 3683860 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: xcb:XC_0905 aminopeptidase P; peptidase M24 complement(3682532..3683860) Stenotrophomonas maltophilia R551-3 6476332 YP_002029660.1 CDS Smal_3278 NC_011071.1 3683860 3684408 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3683860..3684408) Stenotrophomonas maltophilia R551-3 6476333 YP_002029661.1 CDS Smal_3279 NC_011071.1 3684561 3684782 D KEGG: xac:XAC3407 hypothetical protein; hypothetical protein 3684561..3684782 Stenotrophomonas maltophilia R551-3 6476334 YP_002029662.1 CDS Smal_3280 NC_011071.1 3684779 3685075 D PFAM: protein of unknown function DUF710; KEGG: xcb:XC_0902 hypothetical protein; hypothetical protein 3684779..3685075 Stenotrophomonas maltophilia R551-3 6476335 YP_002029663.1 CDS Smal_3281 NC_011071.1 3685498 3686091 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: xcv:XCV3526 putative 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 3685498..3686091 Stenotrophomonas maltophilia R551-3 6476409 YP_002029664.1 CDS Smal_3282 NC_011071.1 3686088 3686567 D PFAM: protein of unknown function DUF55; KEGG: xcv:XCV3527 hypothetical protein; hypothetical protein 3686088..3686567 Stenotrophomonas maltophilia R551-3 6476410 YP_002029665.1 CDS Smal_3283 NC_011071.1 3686590 3687237 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3686590..3687237 Stenotrophomonas maltophilia R551-3 6476411 YP_002029666.1 CDS Smal_3284 NC_011071.1 3687258 3687704 D PFAM: protein of unknown function DUF192; KEGG: xfn:XfasM23_0746 protein of unknown function DUF192; hypothetical protein 3687258..3687704 Stenotrophomonas maltophilia R551-3 6476412 YP_002029667.1 CDS Smal_3285 NC_011071.1 3687865 3688710 D KEGG: xcv:XCV3530 hypothetical protein; hypothetical protein 3687865..3688710 Stenotrophomonas maltophilia R551-3 6476413 YP_002029668.1 CDS Smal_3286 NC_011071.1 3688770 3688961 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: xoo:XOO1124 rubredoxin; rubredoxin-type Fe(Cys)4 protein complement(3688770..3688961) Stenotrophomonas maltophilia R551-3 6476414 YP_002029669.1 CDS thiE NC_011071.1 3689029 3689655 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3689029..3689655 Stenotrophomonas maltophilia R551-3 6476415 YP_002029670.1 CDS Smal_3288 NC_011071.1 3689672 3690961 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3689672..3690961 Stenotrophomonas maltophilia R551-3 6476416 YP_002029671.1 CDS Smal_3289 NC_011071.1 3691042 3691491 R TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: xac:XAC3422 electron transfer protein azurin I; azurin complement(3691042..3691491) Stenotrophomonas maltophilia R551-3 6476417 YP_002029672.1 CDS Smal_3290 NC_011071.1 3691615 3692217 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xom:XOO_1116 hydrolase; HAD-superfamily hydrolase 3691615..3692217 Stenotrophomonas maltophilia R551-3 6476418 YP_002029673.1 CDS argD NC_011071.1 3692357 3693583 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(3692357..3693583) Stenotrophomonas maltophilia R551-3 6476419 YP_002029674.1 CDS Smal_3292 NC_011071.1 3693647 3694519 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: xcb:XC_0881 ion transporter; Ion transport protein 3693647..3694519 Stenotrophomonas maltophilia R551-3 6476420 YP_002029675.1 CDS Smal_3293 NC_011071.1 3694622 3695587 R KEGG: xcb:XC_0880 hypothetical protein; hypothetical protein complement(3694622..3695587) Stenotrophomonas maltophilia R551-3 6476421 YP_002029676.1 CDS Smal_3294 NC_011071.1 3695605 3696597 R KEGG: xcb:XC_0880 hypothetical protein; hypothetical protein complement(3695605..3696597) Stenotrophomonas maltophilia R551-3 6476422 YP_002029677.1 CDS Smal_3295 NC_011071.1 3696691 3697509 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xcb:XC_0879 short chain dehydrogenase; short chain dehydrogenase complement(3696691..3697509) Stenotrophomonas maltophilia R551-3 6476423 YP_002029678.1 CDS Smal_3296 NC_011071.1 3697618 3698301 D hypothetical protein 3697618..3698301 Stenotrophomonas maltophilia R551-3 6476424 YP_002029679.1 CDS Smal_3297 NC_011071.1 3698365 3698871 R KEGG: azo:azo2571 hypothetical protein; hypothetical protein complement(3698365..3698871) Stenotrophomonas maltophilia R551-3 6476425 YP_002029680.1 CDS Smal_3298 NC_011071.1 3698868 3699530 R KEGG: xcv:XCV3547 serine/threonine protein kinase; serine/threonine protein kinase complement(3698868..3699530) Stenotrophomonas maltophilia R551-3 6476426 YP_002029681.1 CDS Smal_3299 NC_011071.1 3699616 3701610 D PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: xcv:XCV3548 putative membrane-associated phospholipid phosphatase; PA-phosphatase-like phosphoesterase 3699616..3701610 Stenotrophomonas maltophilia R551-3 6476427 YP_002029682.1 CDS Smal_3300 NC_011071.1 3701853 3702431 R PFAM: peptidase S16 lon domain protein; KEGG: xac:XAC3435 hypothetical protein; peptidase S16 lon domain-containing protein complement(3701853..3702431) Stenotrophomonas maltophilia R551-3 6476428 YP_002029683.1 CDS Smal_3301 NC_011071.1 3702428 3703792 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: xcv:XCV3552 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(3702428..3703792) Stenotrophomonas maltophilia R551-3 6476429 YP_002029684.1 CDS adk NC_011071.1 3704120 3704683 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3704120..3704683) Stenotrophomonas maltophilia R551-3 6476430 YP_002029685.1 CDS Smal_3303 NC_011071.1 3704820 3706076 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3704820..3706076 Stenotrophomonas maltophilia R551-3 6476431 YP_002029686.1 CDS Smal_3304 NC_011071.1 3706282 3707076 D KEGG: sal:Sala_0459 hypothetical protein; hypothetical protein 3706282..3707076 Stenotrophomonas maltophilia R551-3 6476432 YP_002029687.1 CDS Smal_3305 NC_011071.1 3707176 3707586 D KEGG: bvi:Bcep1808_4883 hypothetical protein; hypothetical protein 3707176..3707586 Stenotrophomonas maltophilia R551-3 6476433 YP_002029688.1 CDS Smal_3306 NC_011071.1 3707659 3708162 R KEGG: xcb:XC_0854 hypothetical protein; hypothetical protein complement(3707659..3708162) Stenotrophomonas maltophilia R551-3 6476434 YP_002029689.1 CDS hppA NC_011071.1 3708447 3710474 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3708447..3710474 Stenotrophomonas maltophilia R551-3 6476435 YP_002029690.1 CDS Smal_3308 NC_011071.1 3710511 3711230 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: azc:AZC_1260 C-terminal TonB protein; TonB family protein complement(3710511..3711230) Stenotrophomonas maltophilia R551-3 6476436 YP_002029691.1 CDS Smal_3309 NC_011071.1 3711227 3711652 R TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpe:RPE_3145 biopolymer transport protein ExbD/TolR; TonB system transport protein ExbD complement(3711227..3711652) Stenotrophomonas maltophilia R551-3 6476437 YP_002029692.1 CDS Smal_3310 NC_011071.1 3711662 3712390 R TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: nha:Nham_0747 MotA/TolQ/ExbB proton channel; tonB-system energizer ExbB complement(3711662..3712390) Stenotrophomonas maltophilia R551-3 6476438 YP_002029693.1 CDS Smal_3311 NC_011071.1 3712377 3712844 R PFAM: protein of unknown function DUF454; KEGG: oan:Oant_0773 protein of unknown function DUF454; hypothetical protein complement(3712377..3712844) Stenotrophomonas maltophilia R551-3 6476439 YP_002029694.1 CDS Smal_3312 NC_011071.1 3712876 3713463 R PFAM: Haem oxygenase-like; KEGG: azc:AZC_2040 heme oxygenase; heme oxygenase-like protein complement(3712876..3713463) Stenotrophomonas maltophilia R551-3 6476440 YP_002029695.1 CDS Smal_3313 NC_011071.1 3713571 3713828 D KEGG: dac:Daci_3042 hypothetical protein; hypothetical protein 3713571..3713828 Stenotrophomonas maltophilia R551-3 6476441 YP_002029696.1 CDS Smal_3314 NC_011071.1 3713924 3716845 R PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_64710 putative extracellular heme-binding protein; TonB-dependent receptor complement(3713924..3716845) Stenotrophomonas maltophilia R551-3 6476442 YP_002029697.1 CDS Smal_3315 NC_011071.1 3717090 3718028 R PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(3717090..3718028) Stenotrophomonas maltophilia R551-3 6476443 YP_002029698.1 CDS Smal_3316 NC_011071.1 3718133 3718633 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mrd:Mrad2831_6088 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(3718133..3718633) Stenotrophomonas maltophilia R551-3 6476444 YP_002029699.1 CDS Smal_3317 NC_011071.1 3718706 3719179 R KEGG: xac:XAC3441 hypothetical protein; hypothetical protein complement(3718706..3719179) Stenotrophomonas maltophilia R551-3 6476445 YP_002029700.1 CDS Smal_3318 NC_011071.1 3719364 3719900 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 3719364..3719900 Stenotrophomonas maltophilia R551-3 6476446 YP_002029701.1 CDS Smal_3319 NC_011071.1 3720052 3721173 D PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: xac:XAC3443 response regulator; putative signal transduction protein 3720052..3721173 Stenotrophomonas maltophilia R551-3 6476447 YP_002029702.1 CDS Smal_3320 NC_011071.1 3721230 3721436 R hypothetical protein complement(3721230..3721436) Stenotrophomonas maltophilia R551-3 6476448 YP_002029703.1 CDS Smal_3321 NC_011071.1 3721616 3724579 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xoo:XOO0950 TonB-dependent receptor; TonB-dependent receptor complement(3721616..3724579) Stenotrophomonas maltophilia R551-3 6476449 YP_002029704.1 CDS Smal_3322 NC_011071.1 3724629 3725528 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: xac:XAC3445 transcriptional regulator; AraC family transcriptional regulator complement(3724629..3725528) Stenotrophomonas maltophilia R551-3 6476450 YP_002029705.1 CDS Smal_3323 NC_011071.1 3725643 3727967 R PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: xcv:XCV3574 putative regulatory protein; transcriptional regulator domain-containing protein complement(3725643..3727967) Stenotrophomonas maltophilia R551-3 6476451 YP_002029706.1 CDS Smal_3324 NC_011071.1 3728237 3728908 R PFAM: Ion transport 2 domain protein; KEGG: aby:ABAYE0189 hypothetical protein; Ion transport 2 domain-containing protein complement(3728237..3728908) Stenotrophomonas maltophilia R551-3 6476452 YP_002029707.1 CDS Smal_3325 NC_011071.1 3729043 3730887 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(3729043..3730887) Stenotrophomonas maltophilia R551-3 6476453 YP_002029708.1 CDS Smal_3326 NC_011071.1 3731318 3732895 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein; choline/carnitine/betaine transporter 3731318..3732895 Stenotrophomonas maltophilia R551-3 6476454 YP_002029709.1 CDS Smal_3327 NC_011071.1 3733457 3735229 R KEGG: xcb:XC_0842 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(3733457..3735229) Stenotrophomonas maltophilia R551-3 6476455 YP_002029710.1 CDS Smal_3328 NC_011071.1 3735863 3736837 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 3735863..3736837 Stenotrophomonas maltophilia R551-3 6476456 YP_002029711.1 CDS Smal_3329 NC_011071.1 3736877 3738613 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 3736877..3738613 Stenotrophomonas maltophilia R551-3 6476457 YP_002029712.1 CDS Smal_3330 NC_011071.1 3738597 3738848 D KEGG: xcb:XC_0839 acetolactate synthase isozyme II small subunit; acetolactate synthase isozyme II small subunit 3738597..3738848 Stenotrophomonas maltophilia R551-3 6476458 YP_002029713.1 CDS Smal_3331 NC_011071.1 3738945 3740036 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 3738945..3740036 Stenotrophomonas maltophilia R551-3 6476459 YP_002029714.1 CDS Smal_3332 NC_011071.1 3740033 3741619 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3740033..3741619 Stenotrophomonas maltophilia R551-3 6476460 YP_002029715.1 CDS Smal_3333 NC_011071.1 3741630 3742403 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: noc:Noc_1261 hypothetical protein; type 11 methyltransferase 3741630..3742403 Stenotrophomonas maltophilia R551-3 6476461 YP_002029716.1 CDS Smal_3334 NC_011071.1 3742464 3743882 D KEGG: cau:Caur_0168 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 3742464..3743882 Stenotrophomonas maltophilia R551-3 6476462 YP_002029717.1 CDS Smal_3335 NC_011071.1 3743882 3744460 D KEGG: ade:Adeh_1979 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 3743882..3744460 Stenotrophomonas maltophilia R551-3 6476463 YP_002029718.1 CDS Smal_3336 NC_011071.1 3744450 3745511 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3744450..3745511 Stenotrophomonas maltophilia R551-3 6476464 YP_002029719.1 CDS Smal_3337 NC_011071.1 3745619 3746392 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pap:PSPA7_2236 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3745619..3746392) Stenotrophomonas maltophilia R551-3 6476465 YP_002029720.1 CDS Smal_3338 NC_011071.1 3746508 3747413 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: gdi:GDI3785 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 3746508..3747413 Stenotrophomonas maltophilia R551-3 6476466 YP_002029721.1 CDS Smal_3339 NC_011071.1 3747628 3750789 R PFAM: acriflavin resistance protein; KEGG: ppf:Pput_4206 acriflavin resistance protein; acriflavin resistance protein complement(3747628..3750789) Stenotrophomonas maltophilia R551-3 6476467 YP_002029722.1 CDS Smal_3340 NC_011071.1 3750793 3751932 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit complement(3750793..3751932) Stenotrophomonas maltophilia R551-3 6476468 YP_002029723.1 CDS Smal_3341 NC_011071.1 3752056 3752736 D PFAM: regulatory protein TetR; KEGG: xom:XOO_0853 transcriptional regulator; TetR family transcriptional regulator 3752056..3752736 Stenotrophomonas maltophilia R551-3 6476469 YP_002029724.1 CDS Smal_3342 NC_011071.1 3752873 3753520 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_0829 L-isoaspartate protein carboxylmethyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3752873..3753520 Stenotrophomonas maltophilia R551-3 6476470 YP_002029725.1 CDS Smal_3343 NC_011071.1 3753537 3754895 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: xac:XAC3463 TolC protein; TolC family type I secretion outer membrane protein 3753537..3754895 Stenotrophomonas maltophilia R551-3 6476471 YP_002029726.1 CDS Smal_3344 NC_011071.1 3754996 3756246 R KEGG: xom:XOO_2010 cationic amino acid transporter; hypothetical protein complement(3754996..3756246) Stenotrophomonas maltophilia R551-3 6476472 YP_002029727.1 CDS Smal_3345 NC_011071.1 3756460 3757758 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(3756460..3757758) Stenotrophomonas maltophilia R551-3 6476473 YP_002029728.1 CDS Smal_3346 NC_011071.1 3757819 3758736 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 3757819..3758736 Stenotrophomonas maltophilia R551-3 6476474 YP_002029729.1 CDS Smal_3347 NC_011071.1 3758837 3760168 R PFAM: O-antigen polymerase; KEGG: xac:XAC3466 membrane protein; O-antigen polymerase complement(3758837..3760168) Stenotrophomonas maltophilia R551-3 6476475 YP_002029730.1 CDS Smal_3348 NC_011071.1 3760149 3761264 R PFAM: glycosyl transferase group 1; KEGG: xcb:XC_0824 glycosyl transferase; group 1 glycosyl transferase complement(3760149..3761264) Stenotrophomonas maltophilia R551-3 6476476 YP_002029731.1 CDS Smal_3349 NC_011071.1 3761280 3761477 R KEGG: xcv:XCV3596 hypothetical protein; hypothetical protein complement(3761280..3761477) Stenotrophomonas maltophilia R551-3 6476477 YP_002029732.1 CDS Smal_3350 NC_011071.1 3761898 3765242 D TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: xac:XAC3469 alpha-1,2-mannosidase; alpha-1,2-mannosidase 3761898..3765242 Stenotrophomonas maltophilia R551-3 6476478 YP_002029733.1 CDS Smal_3351 NC_011071.1 3765239 3765973 D KEGG: ath:AT2G15220 secretory protein, putative; hypothetical protein 3765239..3765973 Stenotrophomonas maltophilia R551-3 6476479 YP_002029734.1 CDS Smal_3352 NC_011071.1 3766433 3768724 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(3766433..3768724) Stenotrophomonas maltophilia R551-3 6476562 YP_002029735.1 CDS Smal_3353 NC_011071.1 3768954 3770297 R PFAM: sodium:dicarboxylate symporter; KEGG: xcb:XC_0820 C4-dicarboxylate transporter DctA; sodium:dicarboxylate symporter complement(3768954..3770297) Stenotrophomonas maltophilia R551-3 6476563 YP_002029736.1 CDS Smal_3354 NC_011071.1 3770630 3771799 D PFAM: phosphate-selective porin O and P; KEGG: xfn:XfasM23_0263 phosphate-selective porin O and P; phosphate-selective porin O and P 3770630..3771799 Stenotrophomonas maltophilia R551-3 6476564 YP_002029737.1 CDS Smal_3355 NC_011071.1 3771866 3774508 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: xoo:XOO1115 sensor histidine kinase; PAS/PAC sensor hybrid histidine kinase 3771866..3774508 Stenotrophomonas maltophilia R551-3 6476565 YP_002029738.1 CDS Smal_3356 NC_011071.1 3775027 3775677 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcb:XC_0816 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator complement(3775027..3775677) Stenotrophomonas maltophilia R551-3 6476566 YP_002029739.1 CDS Smal_3357 NC_011071.1 3775754 3776809 R PFAM: extracellular solute-binding protein family 1; KEGG: xcv:XCV3609 putative periplasmic iron-binding protein; family 1 extracellular solute-binding protein complement(3775754..3776809) Stenotrophomonas maltophilia R551-3 6476567 YP_002029740.1 CDS Smal_3358 NC_011071.1 3776806 3778197 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: xcv:XCV3610 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase complement(3776806..3778197) Stenotrophomonas maltophilia R551-3 6476568 YP_002029741.1 CDS Smal_3359 NC_011071.1 3778190 3778885 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV3611 two-component system regulatory protein; winged helix family two component transcriptional regulator complement(3778190..3778885) Stenotrophomonas maltophilia R551-3 6476569 YP_002029742.1 CDS Smal_3360 NC_011071.1 3779126 3780301 D PFAM: phosphate-selective porin O and P; KEGG: xac:XAC3484 porin O; phosphate-selective porin O and P 3779126..3780301 Stenotrophomonas maltophilia R551-3 6476570 YP_002029743.1 CDS Smal_3361 NC_011071.1 3780374 3781705 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xcv:XCV3613 citrate:H+ symporter; CitMHS family citrate/H+ symporter 3780374..3781705 Stenotrophomonas maltophilia R551-3 6476571 YP_002029744.1 CDS fabG NC_011071.1 3781730 3782470 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3781730..3782470 Stenotrophomonas maltophilia R551-3 6476572 YP_002029745.1 CDS Smal_3363 NC_011071.1 3783074 3785371 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC4368 TonB-dependent receptor; TonB-dependent receptor 3783074..3785371 Stenotrophomonas maltophilia R551-3 6476573 YP_002029746.1 CDS Smal_3364 NC_011071.1 3785816 3787069 R PFAM: protein of unknown function DUF1704; KEGG: xac:XAC3492 hypothetical protein; hypothetical protein complement(3785816..3787069) Stenotrophomonas maltophilia R551-3 6476574 YP_002029747.1 CDS Smal_3365 NC_011071.1 3787280 3788389 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(3787280..3788389) Stenotrophomonas maltophilia R551-3 6476575 YP_002029748.1 CDS Smal_3366 NC_011071.1 3788480 3789778 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 3788480..3789778 Stenotrophomonas maltophilia R551-3 6476576 YP_002029749.1 CDS Smal_3367 NC_011071.1 3789782 3790399 D PFAM: lipolytic protein G-D-S-L family; KEGG: xcv:XCV3623 hypothetical protein; G-D-S-L family lipolytic protein 3789782..3790399 Stenotrophomonas maltophilia R551-3 6476577 YP_002029750.1 CDS Smal_3368 NC_011071.1 3790404 3791120 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xcv:XCV3624 putative methyltransferase; type 12 methyltransferase 3790404..3791120 Stenotrophomonas maltophilia R551-3 6476578 YP_002029751.1 CDS Smal_3369 NC_011071.1 3791189 3791968 R PFAM: polysaccharide deacetylase; KEGG: xcb:XC_0797 acetylxylan esterase; polysaccharide deacetylase complement(3791189..3791968) Stenotrophomonas maltophilia R551-3 6476579 YP_002029752.1 CDS Smal_3370 NC_011071.1 3792028 3792954 D TIGRFAM: glutaredoxin-like protein; PFAM: HesB/YadR/YfhF-family protein; Rhodanese domain protein; glutaredoxin; KEGG: xom:XOO_0988 glutaredoxin-like protein; glutaredoxin-like protein 3792028..3792954 Stenotrophomonas maltophilia R551-3 6476580 YP_002029753.1 CDS Smal_3371 NC_011071.1 3793032 3793571 R PFAM: protein of unknown function DUF924; KEGG: mlo:mlr0784 hypothetical protein; hypothetical protein complement(3793032..3793571) Stenotrophomonas maltophilia R551-3 6476581 YP_002029754.1 CDS Smal_3372 NC_011071.1 3793615 3794391 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(3793615..3794391) Stenotrophomonas maltophilia R551-3 6476582 YP_002029755.1 CDS Smal_3373 NC_011071.1 3794545 3795954 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: xcb:XC_0793 hypothetical protein; amidohydrolase 3794545..3795954 Stenotrophomonas maltophilia R551-3 6476583 YP_002029756.1 CDS Smal_3374 NC_011071.1 3795954 3797216 D PFAM: amidohydrolase; KEGG: xcb:XC_0792 hypothetical protein; amidohydrolase 3795954..3797216 Stenotrophomonas maltophilia R551-3 6476584 YP_002029757.1 CDS Smal_3375 NC_011071.1 3797237 3797869 D PFAM: DSBA oxidoreductase; KEGG: bam:Bamb_4809 DsbA oxidoreductase; DSBA oxidoreductase 3797237..3797869 Stenotrophomonas maltophilia R551-3 6476585 YP_002029758.1 CDS Smal_3376 NC_011071.1 3797965 3798906 D PFAM: DegV family protein; KEGG: xcv:XCV3635 DegV family protein; DegV family protein 3797965..3798906 Stenotrophomonas maltophilia R551-3 6476586 YP_002029759.1 CDS Smal_3377 NC_011071.1 3798984 3799322 D KEGG: xom:XOO_3643 hypothetical protein; hypothetical protein 3798984..3799322 Stenotrophomonas maltophilia R551-3 6476587 YP_002029760.1 CDS Smal_3378 NC_011071.1 3799533 3800945 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_0144 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(3799533..3800945) Stenotrophomonas maltophilia R551-3 6476588 YP_002029761.1 CDS Smal_3379 NC_011071.1 3800942 3802024 R PFAM: secretion protein HlyD family protein; KEGG: ppu:PP_1272 multidrug efflux MFS membrane fusion protein, putative; secretion protein HlyD family protein complement(3800942..3802024) Stenotrophomonas maltophilia R551-3 6476589 YP_002029762.1 CDS Smal_3380 NC_011071.1 3802046 3803575 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_0142 multidrug efflux MFS transporter, putative; major facilitator superfamily protein complement(3802046..3803575) Stenotrophomonas maltophilia R551-3 6476590 YP_002029763.1 CDS Smal_3381 NC_011071.1 3803730 3804647 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_0141 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3803730..3804647) Stenotrophomonas maltophilia R551-3 6476591 YP_002029764.1 CDS Smal_3382 NC_011071.1 3804789 3805235 D PFAM: UspA domain protein; KEGG: pau:PA14_27450 putative universal stress protein; UspA domain-containing protein 3804789..3805235 Stenotrophomonas maltophilia R551-3 6476592 YP_002029765.1 CDS Smal_3383 NC_011071.1 3805241 3805711 D hypothetical protein 3805241..3805711 Stenotrophomonas maltophilia R551-3 6476593 YP_002029766.1 CDS Smal_3384 NC_011071.1 3805766 3807211 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3602 FOG: GGDEF domain; diguanylate cyclase complement(3805766..3807211) Stenotrophomonas maltophilia R551-3 6476594 YP_002029767.1 CDS Smal_3385 NC_011071.1 3807398 3808228 R KEGG: xcb:XC_0777 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(3807398..3808228) Stenotrophomonas maltophilia R551-3 6476595 YP_002029768.1 CDS Smal_3386 NC_011071.1 3808292 3808651 R KEGG: aba:Acid345_2783 tRNA pseudouridine synthase C; hypothetical protein complement(3808292..3808651) Stenotrophomonas maltophilia R551-3 6476596 YP_002029769.1 CDS Smal_3387 NC_011071.1 3808660 3809769 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: aci:ACIAD1879 glutathione-dependent formaldehyde dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(3808660..3809769) Stenotrophomonas maltophilia R551-3 6476597 YP_002029770.1 CDS Smal_3388 NC_011071.1 3809827 3810102 R PFAM: protein of unknown function DUF156; KEGG: xac:XAC0733 hypothetical protein; hypothetical protein complement(3809827..3810102) Stenotrophomonas maltophilia R551-3 6476598 YP_002029771.1 CDS Smal_3389 NC_011071.1 3810290 3810709 D KEGG: bcl:ABC3800 hypothetical protein; hypothetical protein 3810290..3810709 Stenotrophomonas maltophilia R551-3 6476599 YP_002029772.1 CDS Smal_3390 NC_011071.1 3810718 3811623 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psb:Psyr_2945 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(3810718..3811623) Stenotrophomonas maltophilia R551-3 6476600 YP_002029773.1 CDS Smal_3391 NC_011071.1 3811754 3812857 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: reh:H16_B2164 NADH:flavin oxidoreductase; NADH:flavin oxidoreductase 3811754..3812857 Stenotrophomonas maltophilia R551-3 6476601 YP_002029774.1 CDS Smal_3392 NC_011071.1 3812917 3813333 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psa:PST_0059 putative lyase; Glyoxalase/bleomycin resistance protein/dioxygenase 3812917..3813333 Stenotrophomonas maltophilia R551-3 6476602 YP_002029775.1 CDS Smal_3393 NC_011071.1 3813346 3814041 R KEGG: dac:Daci_3000 hypothetical protein; hypothetical protein complement(3813346..3814041) Stenotrophomonas maltophilia R551-3 6476603 YP_002029776.1 CDS Smal_3394 NC_011071.1 3814120 3814782 D PFAM: regulatory protein TetR; KEGG: aha:AHA_3213 probable transcriptional regulator, TetR family; TetR family transcriptional regulator 3814120..3814782 Stenotrophomonas maltophilia R551-3 6476604 YP_002029777.1 CDS Smal_3395 NC_011071.1 3814855 3815739 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:PflO1_3279 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3814855..3815739) Stenotrophomonas maltophilia R551-3 6476605 YP_002029778.1 CDS Smal_3396 NC_011071.1 3815846 3816904 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mms:mma_1872 alcohol dehydrogenase (NADP+); alcohol dehydrogenase GroES domain-containing protein 3815846..3816904 Stenotrophomonas maltophilia R551-3 6476606 YP_002029779.1 CDS Smal_3397 NC_011071.1 3817062 3818318 D PFAM: NnrS family protein; KEGG: spu:754466 similar to NADP-dependent alcohol hydrogenase, putative; NnrS family protein 3817062..3818318 Stenotrophomonas maltophilia R551-3 6476607 YP_002029780.1 CDS Smal_3398 NC_011071.1 3818358 3819722 R KEGG: xcb:XC_0768 glutamate-cysteine ligase precursor; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; glutamate/cysteine ligase complement(3818358..3819722) Stenotrophomonas maltophilia R551-3 6476608 YP_002029781.1 CDS Smal_3399 NC_011071.1 3819875 3820579 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: xom:XOO_3660 nodulin 21-related protein; hypothetical protein 3819875..3820579 Stenotrophomonas maltophilia R551-3 6476609 YP_002029782.1 CDS Smal_3400 NC_011071.1 3820576 3821400 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: xac:XAC0727 transcriptional regulator; AraC family transcriptional regulator 3820576..3821400 Stenotrophomonas maltophilia R551-3 6476610 YP_002029783.1 CDS Smal_3401 NC_011071.1 3822036 3823010 D PFAM: beta-lactamase domain protein; KEGG: xac:XAC0726 methyl parathion hydrolase; beta-lactamase domain-containing protein 3822036..3823010 Stenotrophomonas maltophilia R551-3 6476611 YP_002029784.1 CDS engB NC_011071.1 3823108 3823716 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(3823108..3823716) Stenotrophomonas maltophilia R551-3 6476612 YP_002029785.1 CDS Smal_3403 NC_011071.1 3823866 3824666 D PFAM: cytochrome c class I; KEGG: xcv:XCV0780 putative cytochrome c precursor; cytochrome c class I 3823866..3824666 Stenotrophomonas maltophilia R551-3 6476613 YP_002029786.1 CDS Smal_3404 NC_011071.1 3824773 3825423 D PFAM: DSBA oxidoreductase; KEGG: xcb:XC_0765 disulfide oxidoreductase; DSBA oxidoreductase 3824773..3825423 Stenotrophomonas maltophilia R551-3 6476614 YP_002029787.1 CDS Smal_3405 NC_011071.1 3825530 3826357 D PFAM: DSBA oxidoreductase; KEGG: xcb:XC_0764 thiol:disulfide interchange protein; DSBA oxidoreductase 3825530..3826357 Stenotrophomonas maltophilia R551-3 6476615 YP_002029788.1 CDS Smal_3406 NC_011071.1 3826411 3827148 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xac:XAC0721 hypothetical protein; endonuclease/exonuclease/phosphatase 3826411..3827148 Stenotrophomonas maltophilia R551-3 6476616 YP_002029789.1 CDS Smal_3407 NC_011071.1 3827280 3828155 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pna:Pnap_4738 protein of unknown function DUF6, transmembrane; hypothetical protein complement(3827280..3828155) Stenotrophomonas maltophilia R551-3 6476617 YP_002029790.1 CDS Smal_3408 NC_011071.1 3828228 3828710 D PFAM: regulatory protein AsnC/Lrp family; KEGG: dac:Daci_2839 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 3828228..3828710 Stenotrophomonas maltophilia R551-3 6476618 YP_002029791.1 CDS Smal_3409 NC_011071.1 3828788 3829339 D PFAM: Peptidase M23; KEGG: xcb:XC_1354 peptidase; peptidase M23 3828788..3829339 Stenotrophomonas maltophilia R551-3 6476619 YP_002029792.1 CDS Smal_3410 NC_011071.1 3829513 3831657 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3370 outer membrane receptor for ferric iron uptake; TonB-dependent siderophore receptor 3829513..3831657 Stenotrophomonas maltophilia R551-3 6476620 YP_002029793.1 CDS Smal_3411 NC_011071.1 3831806 3834667 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xcv:XCV3685 TonB-dependent outer membrane receptor; TonB-dependent receptor complement(3831806..3834667) Stenotrophomonas maltophilia R551-3 6476621 YP_002029794.1 CDS Smal_3412 NC_011071.1 3835381 3835788 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcv:XCV0012 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR complement(3835381..3835788) Stenotrophomonas maltophilia R551-3 6476622 YP_002029795.1 CDS Smal_3413 NC_011071.1 3835940 3837925 D PFAM: Lytic transglycosylase catalytic; KEGG: xac:XAC3561 soluble lytic murein transglycosylase; Lytic transglycosylase 3835940..3837925 Stenotrophomonas maltophilia R551-3 6476623 YP_002029796.1 CDS Smal_3414 NC_011071.1 3838031 3838267 D hypothetical protein 3838031..3838267 Stenotrophomonas maltophilia R551-3 6476624 YP_002029797.1 CDS cca NC_011071.1 3838381 3839601 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3838381..3839601 Stenotrophomonas maltophilia R551-3 6476625 YP_002029798.1 CDS Smal_3416 NC_011071.1 3839671 3840105 R KEGG: aau:AAur_3333 hypothetical protein; hypothetical protein complement(3839671..3840105) Stenotrophomonas maltophilia R551-3 6476626 YP_002029799.1 CDS Smal_3417 NC_011071.1 3840155 3840490 R KEGG: xom:XOO_3585 hypothetical protein; hypothetical protein complement(3840155..3840490) Stenotrophomonas maltophilia R551-3 6476627 YP_002029800.1 CDS Smal_3418 NC_011071.1 3840494 3841528 R PFAM: peptidase S41; KEGG: xcb:XC_0755 nisin-resistance protein; peptidase S41 complement(3840494..3841528) Stenotrophomonas maltophilia R551-3 6476628 YP_002029801.1 CDS Smal_3419 NC_011071.1 3841810 3844839 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: atc:AGR_pAT_528 hypothetical protein; outer membrane autotransporter barrel domain-containing protein complement(3841810..3844839) Stenotrophomonas maltophilia R551-3 6476629 YP_002029802.1 CDS Smal_3420 NC_011071.1 3845150 3846217 R KEGG: ter:Tery_1515 hypothetical protein; hypothetical protein complement(3845150..3846217) Stenotrophomonas maltophilia R551-3 6476630 YP_002029803.1 CDS Smal_3421 NC_011071.1 3846217 3847365 R KEGG: xcb:XC_0754 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(3846217..3847365) Stenotrophomonas maltophilia R551-3 6476631 YP_002029804.1 CDS Smal_3422 NC_011071.1 3847365 3848393 R PFAM: sugar isomerase (SIS); KEGG: xcv:XCV0770 glucosamine-6-phosphate deaminase; glutamine--fructose-6-phosphate transaminase complement(3847365..3848393) Stenotrophomonas maltophilia R551-3 6476632 YP_002029805.1 CDS Smal_3423 NC_011071.1 3848401 3849501 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: xoo:XOO3918 transcriptional regulator LacI family; LacI family transcriptional regulator complement(3848401..3849501) Stenotrophomonas maltophilia R551-3 6476633 YP_002029806.1 CDS Smal_3424 NC_011071.1 3849508 3850797 R TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: xcb:XC_0751 glucose/galactose transporter; glucose/galactose transporter complement(3849508..3850797) Stenotrophomonas maltophilia R551-3 6476634 YP_002029807.1 CDS Smal_3425 NC_011071.1 3851174 3852193 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 3851174..3852193 Stenotrophomonas maltophilia R551-3 6476635 YP_002029808.1 CDS Smal_3426 NC_011071.1 3852337 3855045 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0292 TonB-dependent receptor; TonB-dependent receptor 3852337..3855045 Stenotrophomonas maltophilia R551-3 6476636 YP_002029809.1 CDS Smal_3427 NC_011071.1 3855157 3857514 D PFAM: Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, catalytic core; KEGG: cak:Caul_0293 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 3855157..3857514 Stenotrophomonas maltophilia R551-3 6476637 YP_002029810.1 CDS Smal_3428 NC_011071.1 3857695 3858087 R PFAM: VanZ family protein; KEGG: xcc:XCC3430 hypothetical protein; VanZ family protein complement(3857695..3858087) Stenotrophomonas maltophilia R551-3 6476638 YP_002029811.1 CDS Smal_3429 NC_011071.1 3858084 3859268 R PFAM: protein of unknown function DUF185; KEGG: xcb:XC_0732 hypothetical protein; hypothetical protein complement(3858084..3859268) Stenotrophomonas maltophilia R551-3 6476639 YP_002029812.1 CDS Smal_3430 NC_011071.1 3859328 3860065 D Involved in pteridine salvage and antifolate resistance; pteridine reductase 3859328..3860065 Stenotrophomonas maltophilia R551-3 6476640 YP_002029813.1 CDS Smal_3431 NC_011071.1 3860146 3860667 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: xac:XAC0686 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3860146..3860667) Stenotrophomonas maltophilia R551-3 6476641 YP_002029814.1 CDS Smal_3432 NC_011071.1 3860723 3861472 D PFAM: 20S proteasome A and B subunits; KEGG: mca:MCA2055 hypothetical protein; 20S proteasome subunits A and B 3860723..3861472 Stenotrophomonas maltophilia R551-3 6476642 YP_002029815.1 CDS Smal_3433 NC_011071.1 3861544 3863055 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcb:XC_0730 histidine kinase/response regulator hybrid protein; response regulator receiver sensor hybrid histidine kinase complement(3861544..3863055) Stenotrophomonas maltophilia R551-3 6476643 YP_002029816.1 CDS Smal_3434 NC_011071.1 3863060 3863500 R PFAM: response regulator receiver; KEGG: xcb:XC_0729 two-component system regulatory protein; response regulator receiver protein complement(3863060..3863500) Stenotrophomonas maltophilia R551-3 6476713 YP_002029817.1 CDS Smal_3435 NC_011071.1 3863497 3865314 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; PAS fold-4 domain protein; KEGG: xcv:XCV0744 two-component system sensor protein; multi-sensor signal transduction histidine kinase complement(3863497..3865314) Stenotrophomonas maltophilia R551-3 6476714 YP_002029818.1 CDS Smal_3436 NC_011071.1 3865514 3865897 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: xcv:XCV0743 putative secreted protein; transport-associated protein complement(3865514..3865897) Stenotrophomonas maltophilia R551-3 6476715 YP_002029819.1 CDS Smal_3437 NC_011071.1 3866069 3867112 D PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bta:790851 similar to ENSANGP00000003307; oxidoreductase domain-containing protein 3866069..3867112 Stenotrophomonas maltophilia R551-3 6476716 YP_002029820.1 CDS Smal_3438 NC_011071.1 3867448 3868353 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(3867448..3868353) Stenotrophomonas maltophilia R551-3 6476717 YP_002029821.1 CDS Smal_3439 NC_011071.1 3868364 3869602 R KEGG: xac:XAC0679 hypothetical protein; hypothetical protein complement(3868364..3869602) Stenotrophomonas maltophilia R551-3 6476718 YP_002029822.1 CDS Smal_3440 NC_011071.1 3869620 3870222 R KEGG: xac:XAC0677 hypothetical protein; hypothetical protein complement(3869620..3870222) Stenotrophomonas maltophilia R551-3 6476719 YP_002029823.1 CDS Smal_3441 NC_011071.1 3870468 3872645 R KEGG: xcb:XC_0714 tail-specific protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(3870468..3872645) Stenotrophomonas maltophilia R551-3 6476720 YP_002029824.1 CDS Smal_3442 NC_011071.1 3872937 3873947 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(3872937..3873947) Stenotrophomonas maltophilia R551-3 6476721 YP_002029825.1 CDS lipB NC_011071.1 3873966 3874676 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(3873966..3874676) Stenotrophomonas maltophilia R551-3 6476722 YP_002029826.1 CDS Smal_3444 NC_011071.1 3874664 3874942 R PFAM: protein of unknown function DUF493; KEGG: xom:XOO_3732 hypothetical protein; hypothetical protein complement(3874664..3874942) Stenotrophomonas maltophilia R551-3 6476723 YP_002029827.1 CDS Smal_3445 NC_011071.1 3875204 3876277 D KEGG: xcb:XC_0709 hypothetical protein; hypothetical protein 3875204..3876277 Stenotrophomonas maltophilia R551-3 6476724 YP_002029828.1 CDS Smal_3446 NC_011071.1 3876452 3877672 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: xcv:XCV0725 D-alanyl-D-alanine carboxypeptidase precursor; serine-type D-Ala-D-Ala carboxypeptidase complement(3876452..3877672) Stenotrophomonas maltophilia R551-3 6476725 YP_002029829.1 CDS Smal_3447 NC_011071.1 3877773 3879044 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: xcc:XCC3457 rare lipoprotein A; rare lipoprotein A complement(3877773..3879044) Stenotrophomonas maltophilia R551-3 6476726 YP_002029830.1 CDS Smal_3448 NC_011071.1 3879041 3880162 R TIGRFAM: lytic murein transglycosylase B; KEGG: xcb:XC_0706 membrane-bound lytic transglycosylase; lytic murein transglycosylase B complement(3879041..3880162) Stenotrophomonas maltophilia R551-3 6476727 YP_002029831.1 CDS Smal_3449 NC_011071.1 3881255 3882334 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: xcb:XC_0695 rod shape-determining protein; rod shape-determining protein RodA complement(3881255..3882334) Stenotrophomonas maltophilia R551-3 6476728 YP_002029832.1 CDS Smal_3450 NC_011071.1 3882580 3883692 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: xcb:XC_0695 rod shape-determining protein; rod shape-determining protein RodA complement(3882580..3883692) Stenotrophomonas maltophilia R551-3 6476729 YP_002029833.1 CDS Smal_3451 NC_011071.1 3883689 3885764 R KEGG: xom:XOO_3745 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(3883689..3885764) Stenotrophomonas maltophilia R551-3 6476730 YP_002029834.1 CDS Smal_3452 NC_011071.1 3885768 3886253 R TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: xcb:XC_0693 rod shape-determining protein; rod shape-determining protein MreD complement(3885768..3886253) Stenotrophomonas maltophilia R551-3 6476731 YP_002029835.1 CDS Smal_3453 NC_011071.1 3886250 3887473 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3886250..3887473) Stenotrophomonas maltophilia R551-3 6476732 YP_002029836.1 CDS Smal_3454 NC_011071.1 3887595 3888641 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3887595..3888641) Stenotrophomonas maltophilia R551-3 6476733 YP_002029837.1 CDS Smal_3455 NC_011071.1 3888925 3889863 D PFAM: PfkB domain protein; KEGG: xcv:XCV0716 putative carbohydrate kinase; PfkB domain-containing protein 3888925..3889863 Stenotrophomonas maltophilia R551-3 6476734 YP_002029838.1 CDS Smal_3456 NC_011071.1 3889993 3891966 R PFAM: sulfatase; KEGG: aha:AHA_0492 sulfatase; sulfatase complement(3889993..3891966) Stenotrophomonas maltophilia R551-3 6476735 YP_002029839.1 CDS Smal_3457 NC_011071.1 3892252 3892884 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD-superfamily hydrolase complement(3892252..3892884) Stenotrophomonas maltophilia R551-3 6476736 YP_002029840.1 CDS Smal_3458 NC_011071.1 3892881 3893612 R KEGG: xcb:XC_0677 hypothetical protein; hypothetical protein complement(3892881..3893612) Stenotrophomonas maltophilia R551-3 6476737 YP_002029841.1 CDS Smal_3459 NC_011071.1 3893737 3895665 R PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: xcb:XC_0676 aminopeptidase; peptidase M1 membrane alanine aminopeptidase complement(3893737..3895665) Stenotrophomonas maltophilia R551-3 6476738 YP_002029842.1 CDS ubiE NC_011071.1 3895845 3896606 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(3895845..3896606) Stenotrophomonas maltophilia R551-3 6476739 YP_002029843.1 CDS Smal_3461 NC_011071.1 3896686 3897138 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: xcb:XC_0670 cytosine deaminase; zinc-binding CMP/dCMP deaminase 3896686..3897138 Stenotrophomonas maltophilia R551-3 6476740 YP_002029844.1 CDS Smal_3462 NC_011071.1 3897337 3897594 D hypothetical protein 3897337..3897594 Stenotrophomonas maltophilia R551-3 6476741 YP_002029845.1 CDS Smal_3463 NC_011071.1 3897669 3897995 D KEGG: xom:XOO_0123 hypothetical protein; hypothetical protein 3897669..3897995 Stenotrophomonas maltophilia R551-3 6476742 YP_002029846.1 CDS Smal_3464 NC_011071.1 3898069 3898491 D PFAM: protein of unknown function DUF1452; KEGG: azc:AZC_3695 hypothetical protein; hypothetical protein 3898069..3898491 Stenotrophomonas maltophilia R551-3 6476743 YP_002029847.1 CDS Smal_3465 NC_011071.1 3898611 3899063 D KEGG: xcb:XC_3206 hypothetical protein; hypothetical protein 3898611..3899063 Stenotrophomonas maltophilia R551-3 6476744 YP_002029848.1 CDS Smal_3466 NC_011071.1 3899195 3900580 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2383 outer membrane transport protein involved toxic tolerance; NodT family RND efflux system outer membrane lipoprotein complement(3899195..3900580) Stenotrophomonas maltophilia R551-3 6476745 YP_002029849.1 CDS Smal_3467 NC_011071.1 3900706 3903828 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: har:HEAR2382 aminoglycoside/multidrug efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(3900706..3903828) Stenotrophomonas maltophilia R551-3 6476746 YP_002029850.1 CDS Smal_3468 NC_011071.1 3903841 3905022 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: har:HEAR2381 component of acridine efflux pump; RND family efflux transporter MFP subunit complement(3903841..3905022) Stenotrophomonas maltophilia R551-3 6476747 YP_002029851.1 CDS Smal_3469 NC_011071.1 3905249 3905908 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: rfr:Rfer_2067 transcriptional regulator, TetR family; TetR family transcriptional regulator 3905249..3905908 Stenotrophomonas maltophilia R551-3 6476748 YP_002029852.1 CDS Smal_3470 NC_011071.1 3905954 3906940 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: fjo:Fjoh_1312 oxidoreductase domain protein; oxidoreductase domain-containing protein 3905954..3906940 Stenotrophomonas maltophilia R551-3 6476749 YP_002029853.1 CDS hslU NC_011071.1 3907170 3908543 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(3907170..3908543) Stenotrophomonas maltophilia R551-3 6476750 YP_002029854.1 CDS Smal_3472 NC_011071.1 3908650 3909201 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(3908650..3909201) Stenotrophomonas maltophilia R551-3 6476751 YP_002029855.1 CDS Smal_3473 NC_011071.1 3909375 3909575 R KEGG: pfl:PFL_2681 hypothetical protein; hypothetical protein complement(3909375..3909575) Stenotrophomonas maltophilia R551-3 6476752 YP_002029856.1 CDS xerC NC_011071.1 3909753 3910643 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(3909753..3910643) Stenotrophomonas maltophilia R551-3 6476753 YP_002029857.1 CDS Smal_3475 NC_011071.1 3910657 3911331 R PFAM: protein of unknown function DUF484; KEGG: xcb:XC_0663 hypothetical protein; hypothetical protein complement(3910657..3911331) Stenotrophomonas maltophilia R551-3 6476754 YP_002029858.1 CDS dapF NC_011071.1 3911328 3912179 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3911328..3912179) Stenotrophomonas maltophilia R551-3 6476755 YP_002029859.1 CDS Smal_3477 NC_011071.1 3912172 3912444 R KEGG: xom:XOO_3768 hypothetical protein; hypothetical protein complement(3912172..3912444) Stenotrophomonas maltophilia R551-3 6476756 YP_002029860.1 CDS Smal_3478 NC_011071.1 3912573 3912995 R PFAM: protein of unknown function DUF454; KEGG: xcv:XCV0688 hypothetical protein; hypothetical protein complement(3912573..3912995) Stenotrophomonas maltophilia R551-3 6476757 YP_002029861.1 CDS Smal_3479 NC_011071.1 3913051 3915183 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xom:XOO_3770 protease II; oligopeptidase B complement(3913051..3915183) Stenotrophomonas maltophilia R551-3 6476758 YP_002029862.1 CDS Smal_3480 NC_011071.1 3915381 3916565 D PFAM: aminotransferase class I and II; KEGG: xcv:XCV0686 hypothetical protein; hypothetical protein 3915381..3916565 Stenotrophomonas maltophilia R551-3 6476759 YP_002029863.1 CDS Smal_3481 NC_011071.1 3916685 3918781 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: xcv:XCV0685 putative prolyl oligopeptidase precursor; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(3916685..3918781) Stenotrophomonas maltophilia R551-3 6476760 YP_002029864.1 CDS Smal_3482 NC_011071.1 3918851 3919177 R KEGG: xac:XAC0627 hypothetical protein; hypothetical protein complement(3918851..3919177) Stenotrophomonas maltophilia R551-3 6476761 YP_002029865.1 CDS Smal_3483 NC_011071.1 3919305 3919907 D PFAM: Lipocalin family protein; KEGG: xcb:XC_0652 outer membrane lipoprotein; lipocalin family protein 3919305..3919907 Stenotrophomonas maltophilia R551-3 6476762 YP_002029866.1 CDS Smal_3484 NC_011071.1 3919991 3920680 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xcv:XCV3788 D-methionine ABC transporter permease; binding-protein-dependent transport system inner membrane protein complement(3919991..3920680) Stenotrophomonas maltophilia R551-3 6476763 YP_002029867.1 CDS metN NC_011071.1 3920677 3921684 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(3920677..3921684) Stenotrophomonas maltophilia R551-3 6476764 YP_002029868.1 CDS Smal_3486 NC_011071.1 3921895 3922791 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: xac:XAC3670 hypothetical protein; hypothetical protein complement(3921895..3922791) Stenotrophomonas maltophilia R551-3 6476765 YP_002029869.1 CDS Smal_3487 NC_011071.1 3922943 3923425 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3922943..3923425 Stenotrophomonas maltophilia R551-3 6476766 YP_002029870.1 CDS Smal_3488 NC_011071.1 3923534 3924631 R PFAM: helix-turn-helix Fis-type; GAF domain protein; KEGG: bam:Bamb_5581 helix-turn-helix, fis-type; Fis family transcriptional regulator complement(3923534..3924631) Stenotrophomonas maltophilia R551-3 6476767 YP_002029871.1 CDS Smal_3489 NC_011071.1 3924838 3925965 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bpt:Bpet1387 aryl-alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein complement(3924838..3925965) Stenotrophomonas maltophilia R551-3 6476768 YP_002029872.1 CDS Smal_3490 NC_011071.1 3925983 3927449 R PFAM: Aldehyde Dehydrogenase_; KEGG: bpt:Bpet1388 benzaldehyde dehydrogenase II; aldehyde dehydrogenase complement(3925983..3927449) Stenotrophomonas maltophilia R551-3 6476769 YP_002029873.1 CDS Smal_3491 NC_011071.1 3927644 3928210 D PFAM: protein of unknown function DUF1415; KEGG: xom:XOO_0644 hypothetical protein; hypothetical protein 3927644..3928210 Stenotrophomonas maltophilia R551-3 6476770 YP_002029874.1 CDS Smal_3492 NC_011071.1 3928207 3929010 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_0643 oxidoreductase; short-chain dehydrogenase/reductase SDR 3928207..3929010 Stenotrophomonas maltophilia R551-3 6476771 YP_002029875.1 CDS Smal_3493 NC_011071.1 3929082 3931112 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: xac:XAC3627 oligopeptidase A; oligopeptidase A complement(3929082..3931112) Stenotrophomonas maltophilia R551-3 6476772 YP_002029876.1 CDS Smal_3494 NC_011071.1 3931283 3931687 D hypothetical protein 3931283..3931687 Stenotrophomonas maltophilia R551-3 6476773 YP_002029877.1 CDS Smal_3495 NC_011071.1 3931789 3932901 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_3655 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta complement(3931789..3932901) Stenotrophomonas maltophilia R551-3 6476774 YP_002029878.1 CDS Smal_3496 NC_011071.1 3933027 3933542 D KEGG: xcb:XC_3658 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 3933027..3933542 Stenotrophomonas maltophilia R551-3 6476775 YP_002029879.1 CDS Smal_3497 NC_011071.1 3933633 3934061 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll1814 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 3933633..3934061 Stenotrophomonas maltophilia R551-3 6476776 YP_002029880.1 CDS Smal_3498 NC_011071.1 3934129 3934560 R PFAM: CBS domain containing protein; KEGG: nha:Nham_0859 putative transcriptional regulator, XRE family; putative signal transduction protein complement(3934129..3934560) Stenotrophomonas maltophilia R551-3 6476777 YP_002029881.1 CDS Smal_3499 NC_011071.1 3935006 3936844 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(3935006..3936844) Stenotrophomonas maltophilia R551-3 6476778 YP_002029882.1 CDS Smal_3500 NC_011071.1 3937057 3938334 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xcv:XCV3755 membrane fusion protein; RND family efflux transporter MFP subunit 3937057..3938334 Stenotrophomonas maltophilia R551-3 6476779 YP_002029883.1 CDS Smal_3501 NC_011071.1 3938370 3939095 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_3665 ABC transporter ATP-binding protein; ABC transporter-like protein 3938370..3939095 Stenotrophomonas maltophilia R551-3 6476780 YP_002029884.1 CDS Smal_3502 NC_011071.1 3939106 3940404 D PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease; hypothetical protein 3939106..3940404 Stenotrophomonas maltophilia R551-3 6476781 YP_002029885.1 CDS Smal_3503 NC_011071.1 3940425 3941642 D PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3758 ABC transporter permease; hypothetical protein 3940425..3941642 Stenotrophomonas maltophilia R551-3 6476782 YP_002029886.1 CDS Smal_3504 NC_011071.1 3941644 3942030 D KEGG: xcb:XC_3668 hypothetical protein; hypothetical protein 3941644..3942030 Stenotrophomonas maltophilia R551-3 6474383 YP_002029887.1 CDS Smal_3505 NC_011071.1 3942151 3943497 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcv:XCV3760 two-component system regulatory protein; two component sigma54 specific Fis family transcriptional regulator 3942151..3943497 Stenotrophomonas maltophilia R551-3 6474384 YP_002029888.1 CDS Smal_3506 NC_011071.1 3943494 3944846 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: xcv:XCV3761 two-component system sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3943494..3944846 Stenotrophomonas maltophilia R551-3 6474385 YP_002029889.1 CDS Smal_3507 NC_011071.1 3944894 3945427 R PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_2044 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3944894..3945427) Stenotrophomonas maltophilia R551-3 6474386 YP_002029890.1 CDS Smal_3508 NC_011071.1 3945396 3946763 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: xac:XAC3644 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(3945396..3946763) Stenotrophomonas maltophilia R551-3 6474387 YP_002029891.1 CDS Smal_3509 NC_011071.1 3946847 3947230 D PFAM: GtrA family protein; KEGG: xoo:XOO0735 hypothetical protein; GtrA family protein 3946847..3947230 Stenotrophomonas maltophilia R551-3 6474388 YP_002029892.1 CDS atpC NC_011071.1 3947418 3947840 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(3947418..3947840) Stenotrophomonas maltophilia R551-3 6474389 YP_002029893.1 CDS Smal_3511 NC_011071.1 3947954 3949360 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3947954..3949360) Stenotrophomonas maltophilia R551-3 6474390 YP_002029894.1 CDS Smal_3512 NC_011071.1 3949399 3950262 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(3949399..3950262) Stenotrophomonas maltophilia R551-3 6474391 YP_002029895.1 CDS Smal_3513 NC_011071.1 3950341 3951888 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(3950341..3951888) Stenotrophomonas maltophilia R551-3 6474392 YP_002029896.1 CDS Smal_3514 NC_011071.1 3951933 3952460 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3951933..3952460) Stenotrophomonas maltophilia R551-3 6474393 YP_002029897.1 CDS Smal_3515 NC_011071.1 3952463 3952933 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(3952463..3952933) Stenotrophomonas maltophilia R551-3 6474394 YP_002029898.1 CDS Smal_3516 NC_011071.1 3953040 3953345 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3953040..3953345) Stenotrophomonas maltophilia R551-3 6474395 YP_002029899.1 CDS Smal_3517 NC_011071.1 3953419 3954219 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(3953419..3954219) Stenotrophomonas maltophilia R551-3 6474396 YP_002029900.1 CDS Smal_3518 NC_011071.1 3954250 3954582 R KEGG: xac:XAC3656 hypothetical protein; hypothetical protein complement(3954250..3954582) Stenotrophomonas maltophilia R551-3 6474397 YP_002029901.1 CDS Smal_3519 NC_011071.1 3955078 3955896 D KEGG: xac:XAC3657 hypothetical protein; hypothetical protein 3955078..3955896 Stenotrophomonas maltophilia R551-3 6474398 YP_002029902.1 CDS Smal_3520 NC_011071.1 3956359 3958167 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: xcc:XCC0544 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(3956359..3958167) Stenotrophomonas maltophilia R551-3 6474399 YP_002029903.1 CDS Smal_3521 NC_011071.1 3958276 3959988 R KEGG: xcb:XC_3691 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase complement(3958276..3959988) Stenotrophomonas maltophilia R551-3 6474400 YP_002029904.1 CDS Smal_3522 NC_011071.1 3960156 3960671 R KEGG: xcv:XCV3781 hypothetical protein; hypothetical protein complement(3960156..3960671) Stenotrophomonas maltophilia R551-3 6474401 YP_002029905.1 CDS Smal_3523 NC_011071.1 3960858 3961493 D PFAM: OmpW family protein; KEGG: xcb:XC_3694 outer membrane protein; OmpW family protein 3960858..3961493 Stenotrophomonas maltophilia R551-3 6474402 YP_002029906.1 CDS glpD NC_011071.1 3961681 3963162 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3961681..3963162 Stenotrophomonas maltophilia R551-3 6474403 YP_002029907.1 CDS glpK NC_011071.1 3963256 3964755 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 3963256..3964755 Stenotrophomonas maltophilia R551-3 6474404 YP_002029908.1 CDS Smal_3526 NC_011071.1 3964825 3965619 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: xcv:XCV3787 outer membrane lipoprotein; lipoprotein complement(3964825..3965619) Stenotrophomonas maltophilia R551-3 6474405 YP_002029909.1 CDS Smal_3527 NC_011071.1 3965646 3966617 R PFAM: Helix-turn-helix type 11 domain protein; KEGG: xcb:XC_0651 hypothetical protein; helix-turn-helix type 11 domain-containing protein complement(3965646..3966617) Stenotrophomonas maltophilia R551-3 6474406 YP_002029910.1 CDS Smal_3528 NC_011071.1 3966697 3967311 D KEGG: afw:Anae109_0689 hypothetical protein; hypothetical protein 3966697..3967311 Stenotrophomonas maltophilia R551-3 6474407 YP_002029911.1 CDS Smal_3529 NC_011071.1 3967418 3968194 D PFAM: protein of unknown function DUF481; KEGG: xcb:XC_0650 hypothetical protein; hypothetical protein 3967418..3968194 Stenotrophomonas maltophilia R551-3 6474408 YP_002029912.1 CDS hemC NC_011071.1 3968310 3969221 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(3968310..3969221) Stenotrophomonas maltophilia R551-3 6474409 YP_002029913.1 CDS Smal_3531 NC_011071.1 3969807 3970538 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: xcv:XCV0678 two-component system regulatory protein; LytTR family two component transcriptional regulator complement(3969807..3970538) Stenotrophomonas maltophilia R551-3 6474410 YP_002029914.1 CDS Smal_3532 NC_011071.1 3970549 3971565 R PFAM: histidine kinase internal region; KEGG: xcv:XCV0677 two-component system sensor protein; histidine kinase internal region complement(3970549..3971565) Stenotrophomonas maltophilia R551-3 6474411 YP_002029915.1 CDS Smal_3533 NC_011071.1 3971596 3972255 R PFAM: phospholipase/Carboxylesterase; KEGG: xcb:XC_0646 carboxylesterase; carboxylesterase complement(3971596..3972255) Stenotrophomonas maltophilia R551-3 6474412 YP_002029916.1 CDS Smal_3534 NC_011071.1 3972306 3974231 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(3972306..3974231) Stenotrophomonas maltophilia R551-3 6474413 YP_002029917.1 CDS Smal_3535 NC_011071.1 3974725 3976770 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_5169 iron-regulated outer membrane virulence protein; TonB-dependent receptor 3974725..3976770 Stenotrophomonas maltophilia R551-3 6474414 YP_002029918.1 CDS Smal_3536 NC_011071.1 3977219 3977605 D KEGG: xcb:XC_4312 hypothetical protein; hypothetical protein 3977219..3977605 Stenotrophomonas maltophilia R551-3 6474415 YP_002029919.1 CDS Smal_3537 NC_011071.1 3977702 3980233 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xac:XAC1899 chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3977702..3980233) Stenotrophomonas maltophilia R551-3 6474416 YP_002029920.1 CDS Smal_3538 NC_011071.1 3980443 3981336 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: atc:AGR_C_3001 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase complement(3980443..3981336) Stenotrophomonas maltophilia R551-3 6474417 YP_002029921.1 CDS Smal_3539 NC_011071.1 3981435 3982331 R PFAM: peptidase S41; KEGG: mmr:Mmar10_0061 peptidase S41; peptidase S41 complement(3981435..3982331) Stenotrophomonas maltophilia R551-3 6474418 YP_002029922.1 CDS Smal_3540 NC_011071.1 3982396 3982860 D PFAM: regulatory protein MarR; KEGG: xcb:XC_0601 transcriptional regulator MarR family; regulatory protein MarR 3982396..3982860 Stenotrophomonas maltophilia R551-3 6474419 YP_002029923.1 CDS Smal_3541 NC_011071.1 3982866 3984350 R KEGG: amr:AM1_5781 hypothetical protein; hypothetical protein complement(3982866..3984350) Stenotrophomonas maltophilia R551-3 6474420 YP_002029924.1 CDS Smal_3542 NC_011071.1 3984559 3985815 D PFAM: peptidase M24; KEGG: mab:MAB_1399 probable peptidase; peptidase M24 3984559..3985815 Stenotrophomonas maltophilia R551-3 6474421 YP_002029925.1 CDS Smal_3543 NC_011071.1 3985808 3986482 D PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: mab:MAB_1400 probable transcriptional regulator, TetR; transcriptional regulator TetR 3985808..3986482 Stenotrophomonas maltophilia R551-3 6474422 YP_002029926.1 CDS Smal_3544 NC_011071.1 3986619 3986918 D KEGG: mar:MAE_44440 hypothetical protein; hypothetical protein 3986619..3986918 Stenotrophomonas maltophilia R551-3 6474423 YP_002029927.1 CDS Smal_3545 NC_011071.1 3986930 3988402 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_2490 drug transporter; EmrB/QacA subfamily drug resistance transporter complement(3986930..3988402) Stenotrophomonas maltophilia R551-3 6474424 YP_002029928.1 CDS Smal_3546 NC_011071.1 3988528 3989148 D PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0024 transcriptional regulator, TetR family; TetR family transcriptional regulator 3988528..3989148 Stenotrophomonas maltophilia R551-3 6474425 YP_002029929.1 CDS Smal_3547 NC_011071.1 3989164 3989514 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_3564 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3989164..3989514) Stenotrophomonas maltophilia R551-3 6474426 YP_002029930.1 CDS Smal_3548 NC_011071.1 3989620 3989820 R hypothetical protein complement(3989620..3989820) Stenotrophomonas maltophilia R551-3 6474427 YP_002029931.1 CDS Smal_3549 NC_011071.1 3990009 3993386 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Autotransporter beta- domain protein; KEGG: spe:Spro_4738 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 3990009..3993386 Stenotrophomonas maltophilia R551-3 6474428 YP_002029932.1 CDS Smal_3550 NC_011071.1 3993458 3994645 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_3862 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(3993458..3994645) Stenotrophomonas maltophilia R551-3 6474429 YP_002029933.1 CDS Smal_3551 NC_011071.1 3994844 3995749 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_3071 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3994844..3995749) Stenotrophomonas maltophilia R551-3 6474430 YP_002029934.1 CDS Smal_3552 NC_011071.1 3995857 3997392 D PFAM: major facilitator superfamily MFS_1; KEGG: bph:Bphy_3582 major facilitator superfamily MFS_1; major facilitator superfamily protein 3995857..3997392 Stenotrophomonas maltophilia R551-3 6474431 YP_002029935.1 CDS Smal_3553 NC_011071.1 3997383 3997811 D hypothetical protein 3997383..3997811 Stenotrophomonas maltophilia R551-3 6474432 YP_002029936.1 CDS Smal_3554 NC_011071.1 3997823 3999532 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: xcb:XC_3515 penicillin-binding protein 3; peptidoglycan glycosyltransferase 3997823..3999532 Stenotrophomonas maltophilia R551-3 6474433 YP_002029937.1 CDS Smal_3555 NC_011071.1 3999612 4000064 R PFAM: conserved hypothetical protein; KEGG: xcv:XCV1420 hypothetical protein; hypothetical protein complement(3999612..4000064) Stenotrophomonas maltophilia R551-3 6474434 YP_002029938.1 CDS Smal_3556 NC_011071.1 4000620 4003454 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC3444 TonB-dependent receptor; TonB-dependent receptor 4000620..4003454 Stenotrophomonas maltophilia R551-3 6474435 YP_002029939.1 CDS Smal_3557 NC_011071.1 4003712 4004734 D KEGG: dol:Dole_0232 hypothetical protein; hypothetical protein 4003712..4004734 Stenotrophomonas maltophilia R551-3 6474436 YP_002029940.1 CDS Smal_3558 NC_011071.1 4004743 4005636 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppu:PP_4853 hypothetical protein; hypothetical protein complement(4004743..4005636) Stenotrophomonas maltophilia R551-3 6474437 YP_002029941.1 CDS Smal_3559 NC_011071.1 4005701 4006504 D PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ppu:PP_4852 transcriptional regulator, AraC family; AraC family transcriptional regulator 4005701..4006504 Stenotrophomonas maltophilia R551-3 6474438 YP_002029942.1 CDS Smal_3560 NC_011071.1 4006591 4007232 D PFAM: Glutathione S-transferase domain; KEGG: bja:blr6664 glutathione S-transferase; glutathione S-transferase domain-containing protein 4006591..4007232 Stenotrophomonas maltophilia R551-3 6474439 YP_002029943.1 CDS Smal_3561 NC_011071.1 4007254 4007661 R KEGG: pat:Patl_2444 hypothetical protein; hypothetical protein complement(4007254..4007661) Stenotrophomonas maltophilia R551-3 6474440 YP_002029944.1 CDS Smal_3562 NC_011071.1 4007711 4008130 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: xcv:XCV3693 putative DNA-binding protein; histone family protein nucleoid-structuring protein H-NS complement(4007711..4008130) Stenotrophomonas maltophilia R551-3 6474441 YP_002029945.1 CDS Smal_3563 NC_011071.1 4008249 4008641 D PFAM: DoxX family protein; KEGG: neu:NE1546 hypothetical protein; DoxX family protein 4008249..4008641 Stenotrophomonas maltophilia R551-3 6474442 YP_002029946.1 CDS Smal_3564 NC_011071.1 4008666 4009352 R KEGG: sdn:Sden_1211 hypothetical protein; hypothetical protein complement(4008666..4009352) Stenotrophomonas maltophilia R551-3 6474443 YP_002029947.1 CDS Smal_3565 NC_011071.1 4009413 4010039 R hypothetical protein complement(4009413..4010039) Stenotrophomonas maltophilia R551-3 6474444 YP_002029948.1 CDS Smal_3566 NC_011071.1 4010224 4012470 R KEGG: rsh:Rsph17029_3224 hypothetical protein; hypothetical protein complement(4010224..4012470) Stenotrophomonas maltophilia R551-3 6474445 YP_002029949.1 CDS Smal_3567 NC_011071.1 4012879 4014693 R KEGG: lpc:LPC_2168 hypothetical protein; OLD family ATP-dependent endonuclease-like protein complement(4012879..4014693) Stenotrophomonas maltophilia R551-3 6474446 YP_002029950.1 CDS Smal_3568 NC_011071.1 4015645 4018029 D PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_4344 integrase, catalytic region; integrase catalytic subunit 4015645..4018029 Stenotrophomonas maltophilia R551-3 6474447 YP_002029951.1 CDS Smal_3569 NC_011071.1 4018026 4019042 D SMART: AAA ATPase; KEGG: bvi:Bcep1808_4343 AAA ATPase; ATPase AAA 4018026..4019042 Stenotrophomonas maltophilia R551-3 6474448 YP_002029952.1 CDS Smal_3570 NC_011071.1 4019039 4020256 D KEGG: bmu:Bmul_4717 hypothetical protein; hypothetical protein 4019039..4020256 Stenotrophomonas maltophilia R551-3 6474449 YP_002029953.1 CDS Smal_3571 NC_011071.1 4022438 4023844 R PFAM: HipA domain protein; KEGG: xcb:XC_0544 hypothetical protein; hypothetical protein complement(4022438..4023844) Stenotrophomonas maltophilia R551-3 6474451 YP_002029954.1 CDS Smal_3572 NC_011071.1 4024096 4025952 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(4024096..4025952) Stenotrophomonas maltophilia R551-3 6474452 YP_002029955.1 CDS Smal_3573 NC_011071.1 4026043 4026483 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4026043..4026483) Stenotrophomonas maltophilia R551-3 6474453 YP_002029956.1 CDS Smal_3574 NC_011071.1 4026545 4027465 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 4026545..4027465 Stenotrophomonas maltophilia R551-3 6474454 YP_002029957.1 CDS Smal_3575 NC_011071.1 4027541 4028674 D catalyzes the formation of formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine from GTP; GTP cyclohydrolase 4027541..4028674 Stenotrophomonas maltophilia R551-3 6474455 YP_002029958.1 CDS Smal_3576 NC_011071.1 4028702 4029250 D PFAM: membrane-flanked domain; KEGG: xcb:XC_3811 hypothetical protein; membrane-flanked domain-containing protein 4028702..4029250 Stenotrophomonas maltophilia R551-3 6474456 YP_002029959.1 CDS Smal_3577 NC_011071.1 4029247 4030785 D PFAM: membrane-flanked domain; KEGG: xac:XAC3794 hypothetical protein; membrane-flanked domain-containing protein 4029247..4030785 Stenotrophomonas maltophilia R551-3 6474457 YP_002029960.1 CDS Smal_3578 NC_011071.1 4030862 4031917 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: xcb:XC_3813 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(4030862..4031917) Stenotrophomonas maltophilia R551-3 6474458 YP_002029961.1 CDS Smal_3579 NC_011071.1 4031919 4032737 D PFAM: glycosyl transferase family 2; KEGG: xcv:XCV3921 lipopolysaccharide core biosynthesis glycosyltransferase; family 2 glycosyl transferase 4031919..4032737 Stenotrophomonas maltophilia R551-3 6474459 YP_002029962.1 CDS Smal_3580 NC_011071.1 4032782 4033903 D PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet4596 putative glycosylttransferase; group 1 glycosyl transferase 4032782..4033903 Stenotrophomonas maltophilia R551-3 6474460 YP_002029963.1 CDS Smal_3581 NC_011071.1 4033876 4035165 R PFAM: O-antigen polymerase; KEGG: bpt:Bpet4837 LPS ligase-like protein; O-antigen polymerase complement(4033876..4035165) Stenotrophomonas maltophilia R551-3 6474461 YP_002029964.1 CDS Smal_3582 NC_011071.1 4035283 4037004 R PFAM: glycosyl transferase family 39; KEGG: xcb:XC_3816 hypothetical protein; glycosyl transferase family protein complement(4035283..4037004) Stenotrophomonas maltophilia R551-3 6474462 YP_002029965.1 CDS Smal_3583 NC_011071.1 4037028 4038359 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: xcb:XC_3817 Sun protein; sun protein complement(4037028..4038359) Stenotrophomonas maltophilia R551-3 6474463 YP_002029966.1 CDS fmt NC_011071.1 4038363 4039286 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(4038363..4039286) Stenotrophomonas maltophilia R551-3 6474464 YP_002029967.1 CDS def NC_011071.1 4039408 4039920 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(4039408..4039920) Stenotrophomonas maltophilia R551-3 6474465 YP_002029968.1 CDS Smal_3586 NC_011071.1 4040047 4041180 D PFAM: Peptidoglycan-binding LysM; KEGG: xcb:XC_3820 hypothetical protein; peptidoglycan-binding LysM 4040047..4041180 Stenotrophomonas maltophilia R551-3 6474466 YP_002029969.1 CDS Smal_3587 NC_011071.1 4041311 4042438 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: xac:XAC3803 DNA processing chain A; DNA protecting protein DprA 4041311..4042438 Stenotrophomonas maltophilia R551-3 6474467 YP_002029970.1 CDS Smal_3588 NC_011071.1 4042482 4042955 D PFAM: protein of unknown function DUF494; KEGG: xcb:XC_3822 hypothetical protein; hypothetical protein 4042482..4042955 Stenotrophomonas maltophilia R551-3 6474468 YP_002029971.1 CDS Smal_3589 NC_011071.1 4042995 4043753 D PFAM: Fimbrial protein pilin; KEGG: xcv:XCV3930 PilA-related fimbrial protein; fimbrial protein pilin 4042995..4043753 Stenotrophomonas maltophilia R551-3 6474469 YP_002029972.1 CDS Smal_3590 NC_011071.1 4043803 4044735 D PFAM: RDD domain containing protein; KEGG: xcb:XC_3824 hypothetical protein; RDD domain-containing protein 4043803..4044735 Stenotrophomonas maltophilia R551-3 6474470 YP_002029973.1 CDS Smal_3591 NC_011071.1 4044928 4047402 D decatenates replicating daughter chromosomes; DNA topoisomerase I 4044928..4047402 Stenotrophomonas maltophilia R551-3 6474471 YP_002029974.1 CDS Smal_3592 NC_011071.1 4047534 4048124 D PFAM: SUA5/yciO/yrdC domain; KEGG: xcv:XCV3933 SUA5/YciO/YrdC family protein; SUA5/yciO/yrdC domain 4047534..4048124 Stenotrophomonas maltophilia R551-3 6474472 YP_002029975.1 CDS Smal_3593 NC_011071.1 4048168 4048857 D KEGG: xom:XOO_0538 hypothetical protein; hypothetical protein 4048168..4048857 Stenotrophomonas maltophilia R551-3 6474473 YP_002029976.1 CDS Smal_3594 NC_011071.1 4048893 4049633 D KEGG: xcb:XC_3828 hypothetical protein; hypothetical protein 4048893..4049633 Stenotrophomonas maltophilia R551-3 6474474 YP_002029977.1 CDS Smal_3595 NC_011071.1 4049727 4050503 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xom:XOO_0536 tropinone reductase; tropinone reductase complement(4049727..4050503) Stenotrophomonas maltophilia R551-3 6474475 YP_002029978.1 CDS Smal_3596 NC_011071.1 4050615 4050827 D KEGG: xcb:XC_3831 hypothetical protein; hypothetical protein 4050615..4050827 Stenotrophomonas maltophilia R551-3 6474476 YP_002029979.1 CDS Smal_3597 NC_011071.1 4050942 4052864 R KEGG: xcb:XC_3832 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type complement(4050942..4052864) Stenotrophomonas maltophilia R551-3 6474477 YP_002029980.1 CDS Smal_3598 NC_011071.1 4052981 4054345 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(4052981..4054345) Stenotrophomonas maltophilia R551-3 6474478 YP_002029981.1 CDS Smal_3599 NC_011071.1 4054584 4055159 R KEGG: xcb:XC_3834 hypothetical protein; hypothetical protein complement(4054584..4055159) Stenotrophomonas maltophilia R551-3 6474479 YP_002029982.1 CDS Smal_3600 NC_011071.1 4055152 4056156 R KEGG: xac:XAC3817 hypothetical protein; hypothetical protein complement(4055152..4056156) Stenotrophomonas maltophilia R551-3 6474480 YP_002029983.1 CDS Smal_3601 NC_011071.1 4056549 4058747 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4056549..4058747 Stenotrophomonas maltophilia R551-3 6474481 YP_002029984.1 CDS Smal_3602 NC_011071.1 4058842 4059462 R PFAM: Glutathione S-transferase domain; KEGG: xac:XAC3819 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(4058842..4059462) Stenotrophomonas maltophilia R551-3 6474482 YP_002029985.1 CDS Smal_3603 NC_011071.1 4059606 4060385 R PFAM: protein of unknown function DUF88; KEGG: xcb:XC_3839 hypothetical protein; hypothetical protein complement(4059606..4060385) Stenotrophomonas maltophilia R551-3 6474483 YP_002029986.1 CDS Smal_3604 NC_011071.1 4060508 4061788 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: xac:XAC3822 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4060508..4061788 Stenotrophomonas maltophilia R551-3 6474484 YP_002029987.1 CDS Smal_3605 NC_011071.1 4061880 4062332 R hypothetical protein complement(4061880..4062332) Stenotrophomonas maltophilia R551-3 6474485 YP_002029988.1 CDS Smal_3606 NC_011071.1 4062337 4062768 R KEGG: ccr:CC_0846 hypothetical protein; hypothetical protein complement(4062337..4062768) Stenotrophomonas maltophilia R551-3 6474486 YP_002029989.1 CDS Smal_3607 NC_011071.1 4062838 4063257 R hypothetical protein complement(4062838..4063257) Stenotrophomonas maltophilia R551-3 6474487 YP_002029990.1 CDS Smal_3608 NC_011071.1 4063330 4063596 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: xcb:XC_1086 hypothetical protein; GIY-YIG nuclease superfamily protein complement(4063330..4063596) Stenotrophomonas maltophilia R551-3 6474488 YP_002029991.1 CDS Smal_3609 NC_011071.1 4063928 4064545 D PFAM: protein of unknown function UPF0126; KEGG: pfo:PflO1_0516 hypothetical protein; hypothetical protein 4063928..4064545 Stenotrophomonas maltophilia R551-3 6474489 YP_002029992.1 CDS Smal_3610 NC_011071.1 4064831 4065997 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bpa:BPP3959 HlyD family secretion protein; RND family efflux transporter MFP subunit 4064831..4065997 Stenotrophomonas maltophilia R551-3 6474490 YP_002029993.1 CDS Smal_3611 NC_011071.1 4065994 4069128 D PFAM: acriflavin resistance protein; KEGG: ote:Oter_1123 acriflavin resistance protein; acriflavin resistance protein 4065994..4069128 Stenotrophomonas maltophilia R551-3 6474491 YP_002029994.1 CDS Smal_3612 NC_011071.1 4069125 4072184 D PFAM: acriflavin resistance protein; KEGG: ote:Oter_1122 acriflavin resistance protein; acriflavin resistance protein 4069125..4072184 Stenotrophomonas maltophilia R551-3 6474492 YP_002029995.1 CDS Smal_3613 NC_011071.1 4072228 4072539 R KEGG: ccr:CC_3710 hypothetical protein; hypothetical protein complement(4072228..4072539) Stenotrophomonas maltophilia R551-3 6474493 YP_002029996.1 CDS Smal_3614 NC_011071.1 4072992 4074065 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(4072992..4074065) Stenotrophomonas maltophilia R551-3 6474494 YP_002029997.1 CDS Smal_3615 NC_011071.1 4074361 4074618 R hypothetical protein complement(4074361..4074618) Stenotrophomonas maltophilia R551-3 6474495 YP_002029998.1 CDS Smal_3616 NC_011071.1 4074731 4075069 R KEGG: met:M446_4995 hypothetical protein; hypothetical protein complement(4074731..4075069) Stenotrophomonas maltophilia R551-3 6474496 YP_002029999.1 CDS Smal_3617 NC_011071.1 4075121 4075867 R KEGG: rru:Rru_A1610 hypothetical protein; hypothetical protein complement(4075121..4075867) Stenotrophomonas maltophilia R551-3 6474497 YP_002030000.1 CDS Smal_3618 NC_011071.1 4075864 4076367 R PFAM: regulatory protein MarR; KEGG: oan:Oant_0083 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4075864..4076367) Stenotrophomonas maltophilia R551-3 6474498 YP_002030001.1 CDS Smal_3619 NC_011071.1 4076437 4077735 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ccr:CC_1181 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4076437..4077735) Stenotrophomonas maltophilia R551-3 6474499 YP_002030002.1 CDS Smal_3620 NC_011071.1 4077768 4078475 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ccr:CC_1182 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(4077768..4078475) Stenotrophomonas maltophilia R551-3 6474500 YP_002030003.1 CDS Smal_3621 NC_011071.1 4078583 4079509 D KEGG: cak:Caul_2763 peptidase A2A retrovirus catalytic; hypothetical protein 4078583..4079509 Stenotrophomonas maltophilia R551-3 6474501 YP_002030004.1 CDS Smal_3622 NC_011071.1 4079537 4080565 R PFAM: Luciferase-like monooxygenase; KEGG: pae:PA1186 hypothetical protein; luciferase-like monooxygenase complement(4079537..4080565) Stenotrophomonas maltophilia R551-3 6474502 YP_002030005.1 CDS Smal_3623 NC_011071.1 4080579 4081214 R PFAM: Glutathione S-transferase domain; KEGG: pau:PA14_49100 probable glutathione S-transferase; glutathione S-transferase domain-containing protein complement(4080579..4081214) Stenotrophomonas maltophilia R551-3 6474503 YP_002030006.1 CDS Smal_3624 NC_011071.1 4081463 4082350 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_4195 probable transcriptional regulator; LysR family transcriptional regulator 4081463..4082350 Stenotrophomonas maltophilia R551-3 6474504 YP_002030007.1 CDS Smal_3625 NC_011071.1 4082381 4082992 R KEGG: rpe:RPE_0079 hypothetical protein; hypothetical protein complement(4082381..4082992) Stenotrophomonas maltophilia R551-3 6474505 YP_002030008.1 CDS groEL NC_011071.1 4083126 4084775 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4083126..4084775) Stenotrophomonas maltophilia R551-3 6474506 YP_002030009.1 CDS groES NC_011071.1 4084857 4085144 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4084857..4085144) Stenotrophomonas maltophilia R551-3 6474507 YP_002030010.1 CDS Smal_3628 NC_011071.1 4085496 4087286 D PFAM: Endonuclease I; KEGG: xcv:XCV0569 putative extracellular ribonuclease; endonuclease I 4085496..4087286 Stenotrophomonas maltophilia R551-3 6474508 YP_002030011.1 CDS Smal_3629 NC_011071.1 4087355 4087693 D PFAM: CutA1 divalent ion tolerance protein; KEGG: xom:XOO_0525 periplasmic divalent cation tolerance protein; CutA1 divalent ion tolerance protein 4087355..4087693 Stenotrophomonas maltophilia R551-3 6474509 YP_002030012.1 CDS Smal_3630 NC_011071.1 4087690 4090074 D KEGG: xac:XAC0534 C-type cytochrome biogenesis protein (copper tolerance); C-type cytochrome biogenesis protein 4087690..4090074 Stenotrophomonas maltophilia R551-3 6474510 YP_002030013.1 CDS Smal_3631 NC_011071.1 4090071 4090634 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_I1165 thioredoxin family protein, putative; alkyl hydroperoxide reductase 4090071..4090634 Stenotrophomonas maltophilia R551-3 6474511 YP_002030014.1 CDS Smal_3632 NC_011071.1 4091274 4093796 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: xoo:XOO0407 iron-uptake factor; flavodoxin/nitric oxide synthase 4091274..4093796 Stenotrophomonas maltophilia R551-3 6474512 YP_002030015.1 CDS Smal_3633 NC_011071.1 4093875 4096412 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcb:XC_2320 chemotaxis protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer complement(4093875..4096412) Stenotrophomonas maltophilia R551-3 6474513 YP_002030016.1 CDS Smal_3634 NC_011071.1 4096615 4097454 D PFAM: N-acetyltransferase; KEGG: pmy:Pmen_3693 N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 4096615..4097454 Stenotrophomonas maltophilia R551-3 6474514 YP_002030017.1 CDS Smal_3635 NC_011071.1 4097521 4097892 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: oan:Oant_4164 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(4097521..4097892) Stenotrophomonas maltophilia R551-3 6474515 YP_002030018.1 CDS Smal_3636 NC_011071.1 4097975 4098691 D SMART: extracellular solute-binding protein family 3; KEGG: met:M446_1628 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 4097975..4098691 Stenotrophomonas maltophilia R551-3 6474516 YP_002030019.1 CDS Smal_3637 NC_011071.1 4098726 4099625 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_3853 B-lactamase regulatory protein; LysR family transcriptional regulator complement(4098726..4099625) Stenotrophomonas maltophilia R551-3 6474517 YP_002030020.1 CDS Smal_3638 NC_011071.1 4099900 4101447 R PFAM: Alkaline phosphatase; KEGG: mfa:Mfla_0451 alkaline phosphatase; alkaline phosphatase complement(4099900..4101447) Stenotrophomonas maltophilia R551-3 6474518 YP_002030021.1 CDS Smal_3639 NC_011071.1 4101584 4102333 R KEGG: pfo:PflO1_3820 hypothetical protein; hypothetical protein complement(4101584..4102333) Stenotrophomonas maltophilia R551-3 6474519 YP_002030022.1 CDS Smal_3640 NC_011071.1 4102398 4103294 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bmn:BMA10247_A1242 D-alanyl-D-alanine carboxypeptidase family protein; serine-type D-Ala-D-Ala carboxypeptidase 4102398..4103294 Stenotrophomonas maltophilia R551-3 6474520 YP_002030023.1 CDS Smal_3641 NC_011071.1 4103300 4103893 R PFAM: regulatory protein TetR; KEGG: rru:Rru_A3067 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4103300..4103893) Stenotrophomonas maltophilia R551-3 6474521 YP_002030024.1 CDS Smal_3642 NC_011071.1 4103909 4104505 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: rru:Rru_A3066 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(4103909..4104505) Stenotrophomonas maltophilia R551-3 6474522 YP_002030025.1 CDS Smal_3643 NC_011071.1 4104632 4105162 D hypothetical protein 4104632..4105162 Stenotrophomonas maltophilia R551-3 6474523 YP_002030026.1 CDS Smal_3644 NC_011071.1 4105237 4106067 R KEGG: dac:Daci_4222 hypothetical protein; hypothetical protein complement(4105237..4106067) Stenotrophomonas maltophilia R551-3 6474524 YP_002030027.1 CDS Smal_3645 NC_011071.1 4106236 4106976 D PFAM: Dopa 45-dioxygenase; KEGG: bra:BRADO4842 hypothetical protein; Dopa 45-dioxygenase 4106236..4106976 Stenotrophomonas maltophilia R551-3 6474525 YP_002030028.1 CDS Smal_3646 NC_011071.1 4107291 4107740 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 4107291..4107740 Stenotrophomonas maltophilia R551-3 6474526 YP_002030029.1 CDS Smal_3647 NC_011071.1 4107740 4108162 D PFAM: protein of unknown function DUF1311; KEGG: atc:AGR_C_4360 hypothetical protein; hypothetical protein 4107740..4108162 Stenotrophomonas maltophilia R551-3 6474527 YP_002030030.1 CDS Smal_3648 NC_011071.1 4108216 4108695 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 4108216..4108695 Stenotrophomonas maltophilia R551-3 6474528 YP_002030031.1 CDS Smal_3649 NC_011071.1 4108706 4110073 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 4108706..4110073 Stenotrophomonas maltophilia R551-3 6474529 YP_002030032.1 CDS Smal_3650 NC_011071.1 4110209 4110583 R KEGG: xcb:XC_0526 hypothetical protein; hypothetical protein complement(4110209..4110583) Stenotrophomonas maltophilia R551-3 6474530 YP_002030033.1 CDS Smal_3651 NC_011071.1 4110580 4111542 R KEGG: xcb:XC_0525 hypothetical protein; hypothetical protein complement(4110580..4111542) Stenotrophomonas maltophilia R551-3 6474531 YP_002030034.1 CDS prmA NC_011071.1 4111707 4112627 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4111707..4112627 Stenotrophomonas maltophilia R551-3 6474532 YP_002030035.1 CDS Smal_3653 NC_011071.1 4112838 4113437 D KEGG: xcv:XCV0557 hypothetical protein; hypothetical protein 4112838..4113437 Stenotrophomonas maltophilia R551-3 6474533 YP_002030036.1 CDS fis NC_011071.1 4113553 4113828 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4113553..4113828 Stenotrophomonas maltophilia R551-3 6474534 YP_002030037.1 CDS Smal_3655 NC_011071.1 4113957 4114952 R PFAM: phosphatidate cytidylyltransferase; KEGG: xcv:XCV0555 putative phosphatidate cytidiltransferase; phosphatidate cytidylyltransferase complement(4113957..4114952) Stenotrophomonas maltophilia R551-3 6474535 YP_002030038.1 CDS Smal_3656 NC_011071.1 4114949 4115581 R PFAM: phospholipid/glycerol acyltransferase; KEGG: xcb:XC_0517 acyltransferase; phospholipid/glycerol acyltransferase complement(4114949..4115581) Stenotrophomonas maltophilia R551-3 6474536 YP_002030039.1 CDS Smal_3657 NC_011071.1 4115591 4116028 R KEGG: xcb:XC_0514 hypothetical protein; hypothetical protein complement(4115591..4116028) Stenotrophomonas maltophilia R551-3 6474537 YP_002030040.1 CDS Smal_3658 NC_011071.1 4116025 4117359 R PFAM: phosphoesterase PA-phosphatase related; Dual specificity protein phosphatase; KEGG: xac:XAC0516 hypothetical protein; putative dual specificity phosphatase complement(4116025..4117359) Stenotrophomonas maltophilia R551-3 6474538 YP_002030041.1 CDS Smal_3659 NC_011071.1 4117359 4119110 R KEGG: xcb:XC_0512 hypothetical protein; hypothetical protein complement(4117359..4119110) Stenotrophomonas maltophilia R551-3 6474539 YP_002030042.1 CDS Smal_3660 NC_011071.1 4119145 4119762 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: xcv:XCV0548 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(4119145..4119762) Stenotrophomonas maltophilia R551-3 6474540 YP_002030043.1 CDS Smal_3661 NC_011071.1 4119809 4120432 R KEGG: pfl:PFL_3957 hypothetical protein; hypothetical protein complement(4119809..4120432) Stenotrophomonas maltophilia R551-3 6474541 YP_002030044.1 CDS purH NC_011071.1 4120617 4122200 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4120617..4122200 Stenotrophomonas maltophilia R551-3 6474542 YP_002030045.1 CDS Smal_3663 NC_011071.1 4122217 4123086 D KEGG: xac:XAC0512 hypothetical protein; hypothetical protein 4122217..4123086 Stenotrophomonas maltophilia R551-3 6474543 YP_002030046.1 CDS Smal_3664 NC_011071.1 4123101 4124132 D KEGG: rpb:RPB_3721 putative DNA-binding protein; putative DNA-binding protein 4123101..4124132 Stenotrophomonas maltophilia R551-3 6474544 YP_002030047.1 CDS Smal_3665 NC_011071.1 4124192 4125478 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4124192..4125478 Stenotrophomonas maltophilia R551-3 6474545 YP_002030048.1 CDS Smal_3666 NC_011071.1 4125977 4126852 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4125977..4126852) Stenotrophomonas maltophilia R551-3 6474546 YP_002030049.1 CDS Smal_3667 NC_011071.1 4127210 4127602 D PFAM: Penicillinase repressor; KEGG: sdn:Sden_0578 penicillinase repressor; CopY family transcriptional repressor 4127210..4127602 Stenotrophomonas maltophilia R551-3 6474547 YP_002030050.1 CDS Smal_3668 NC_011071.1 4127599 4129128 D PFAM: Ankyrin; peptidase M56 BlaR1; KEGG: sdn:Sden_0579 peptidase M56, BlaR1; peptidase M56 BlaR1 4127599..4129128 Stenotrophomonas maltophilia R551-3 6474548 YP_002030051.1 CDS Smal_3669 NC_011071.1 4129256 4130779 D PFAM: beta-lactamase; KEGG: sus:Acid_1314 beta-lactamase; beta-lactamase 4129256..4130779 Stenotrophomonas maltophilia R551-3 6474549 YP_002030052.1 CDS Smal_3670 NC_011071.1 4130832 4131545 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4130832..4131545) Stenotrophomonas maltophilia R551-3 6474550 YP_002030053.1 CDS Smal_3671 NC_011071.1 4131542 4132384 R PFAM: response regulator receiver; KEGG: xcv:XCV3951 two-component system response regulator; response regulator receiver protein complement(4131542..4132384) Stenotrophomonas maltophilia R551-3 6474551 YP_002030054.1 CDS Smal_3672 NC_011071.1 4132392 4133339 R PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3952 cell division protein FtsX; hypothetical protein complement(4132392..4133339) Stenotrophomonas maltophilia R551-3 6474552 YP_002030055.1 CDS Smal_3673 NC_011071.1 4133342 4134028 R KEGG: xac:XAC3828 ABC transporter ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(4133342..4134028) Stenotrophomonas maltophilia R551-3 6474553 YP_002030056.1 CDS Smal_3674 NC_011071.1 4134225 4135949 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4134225..4135949) Stenotrophomonas maltophilia R551-3 6474554 YP_002030057.1 CDS Smal_3675 NC_011071.1 4136460 4136789 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcb:XC_3849 thioredoxin; thioredoxin 4136460..4136789 Stenotrophomonas maltophilia R551-3 6474555 YP_002030058.1 CDS Smal_3676 NC_011071.1 4137022 4138773 D KEGG: xfn:XfasM23_2158 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho 4137022..4138773 Stenotrophomonas maltophilia R551-3 6474556 YP_002030059.1 CDS Smal_3677 NC_011071.1 4138988 4140562 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ppg:PputGB1_2050 diguanylate cyclase; diguanylate cyclase 4138988..4140562 Stenotrophomonas maltophilia R551-3 6474557 YP_002030060.1 CDS Smal_3678 NC_011071.1 4140597 4141484 R TIGRFAM: TonB family protein; KEGG: xcb:XC_3851 hypothetical protein; TonB family protein complement(4140597..4141484) Stenotrophomonas maltophilia R551-3 6474558 YP_002030061.1 CDS aceK NC_011071.1 4141551 4143281 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(4141551..4143281) Stenotrophomonas maltophilia R551-3 6474559 YP_002030062.1 CDS Smal_3680 NC_011071.1 4143428 4143787 R KEGG: dac:Daci_0558 hypothetical protein; hypothetical protein complement(4143428..4143787) Stenotrophomonas maltophilia R551-3 6474560 YP_002030063.1 CDS Smal_3681 NC_011071.1 4143841 4144257 R PFAM: Roadblock/LC7 family protein; KEGG: ace:Acel_1325 roadblock/LC7 family protein; Roadblock/LC7 family protein complement(4143841..4144257) Stenotrophomonas maltophilia R551-3 6474561 YP_002030064.1 CDS Smal_3682 NC_011071.1 4144250 4144798 R PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: dac:Daci_0776 protein of unknown function ATP binding; hypothetical protein complement(4144250..4144798) Stenotrophomonas maltophilia R551-3 6474562 YP_002030065.1 CDS Smal_3683 NC_011071.1 4144791 4145756 R hypothetical protein complement(4144791..4145756) Stenotrophomonas maltophilia R551-3 6474563 YP_002030066.1 CDS Smal_3684 NC_011071.1 4146071 4148293 R KEGG: xcv:XCV3960 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase complement(4146071..4148293) Stenotrophomonas maltophilia R551-3 6474564 YP_002030067.1 CDS Smal_3685 NC_011071.1 4148667 4149176 R KEGG: xac:XAC3844 hypothetical protein; hypothetical protein complement(4148667..4149176) Stenotrophomonas maltophilia R551-3 6474565 YP_002030068.1 CDS Smal_3686 NC_011071.1 4149219 4149512 R PFAM: Peptidoglycan-binding LysM; KEGG: xcb:XC_3856 hypothetical protein; peptidoglycan-binding LysM complement(4149219..4149512) Stenotrophomonas maltophilia R551-3 6474566 YP_002030069.1 CDS queF NC_011071.1 4149810 4150628 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(4149810..4150628) Stenotrophomonas maltophilia R551-3 6474567 YP_002030070.1 CDS Smal_3688 NC_011071.1 4151167 4152486 R KEGG: xcb:XC_3858 N-acyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(4151167..4152486) Stenotrophomonas maltophilia R551-3 6474568 YP_002030071.1 CDS Smal_3689 NC_011071.1 4152673 4153917 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC3848 membrane fusion protein precursor; RND family efflux transporter MFP subunit 4152673..4153917 Stenotrophomonas maltophilia R551-3 6474569 YP_002030072.1 CDS Smal_3690 NC_011071.1 4153992 4157225 D PFAM: acriflavin resistance protein; KEGG: xcb:XC_3860 acriflavin resistance protein; acriflavin resistance protein 4153992..4157225 Stenotrophomonas maltophilia R551-3 6474570 YP_002030073.1 CDS Smal_3691 NC_011071.1 4157254 4160379 D PFAM: acriflavin resistance protein; KEGG: xcc:XCC3789 acriflavin resistance protein; acriflavin resistance protein 4157254..4160379 Stenotrophomonas maltophilia R551-3 6474571 YP_002030074.1 CDS Smal_3692 NC_011071.1 4160768 4162825 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aci:ACIAD1163 putative ferric siderophore receptor protein; TonB-dependent siderophore receptor 4160768..4162825 Stenotrophomonas maltophilia R551-3 6474572 YP_002030075.1 CDS Smal_3693 NC_011071.1 4162988 4165165 D TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: xac:XAC0510 hypothetical protein; YccS/YhfK family integral membrane protein 4162988..4165165 Stenotrophomonas maltophilia R551-3 6474573 YP_002030076.1 CDS Smal_3694 NC_011071.1 4165286 4166080 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ent:Ent638_3901 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4165286..4166080 Stenotrophomonas maltophilia R551-3 6474574 YP_002030077.1 CDS Smal_3695 NC_011071.1 4166178 4168067 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: xcb:XC_0505 2-acylglycerophosphoethanolamine acyltransferase; phospholipid/glycerol acyltransferase 4166178..4168067 Stenotrophomonas maltophilia R551-3 6474575 YP_002030078.1 CDS Smal_3696 NC_011071.1 4168250 4168537 D PFAM: Interferon-induced transmembrane protein; KEGG: pca:Pcar_0370 hypothetical protein; interferon-induced transmembrane protein 4168250..4168537 Stenotrophomonas maltophilia R551-3 6474576 YP_002030079.1 CDS Smal_3697 NC_011071.1 4168572 4168850 D PFAM: Interferon-induced transmembrane protein; KEGG: mva:Mvan_4718 hypothetical protein; interferon-induced transmembrane protein 4168572..4168850 Stenotrophomonas maltophilia R551-3 6474577 YP_002030080.1 CDS Smal_3698 NC_011071.1 4168894 4169319 D KEGG: xac:XAC0505 hypothetical protein; hypothetical protein 4168894..4169319 Stenotrophomonas maltophilia R551-3 6474578 YP_002030081.1 CDS Smal_3699 NC_011071.1 4169794 4170681 R KEGG: xcb:XC_0502 transmembrane protein; signaling modulator of AmpD, AmpE complement(4169794..4170681) Stenotrophomonas maltophilia R551-3 6474579 YP_002030082.1 CDS Smal_3700 NC_011071.1 4170828 4171733 R PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: xac:XAC0503 NADH pyrophosphatase; NUDIX hydrolase complement(4170828..4171733) Stenotrophomonas maltophilia R551-3 6474580 YP_002030083.1 CDS Smal_3701 NC_011071.1 4171852 4172244 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(4171852..4172244) Stenotrophomonas maltophilia R551-3 6474581 YP_002030084.1 CDS Smal_3702 NC_011071.1 4172276 4172740 R PFAM: protein of unknown function DUF583; KEGG: xcv:XCV0533 hypothetical protein; hypothetical protein complement(4172276..4172740) Stenotrophomonas maltophilia R551-3 6474582 YP_002030085.1 CDS Smal_3703 NC_011071.1 4172745 4173488 R KEGG: xcb:XC_0498 hypothetical protein; hypothetical protein complement(4172745..4173488) Stenotrophomonas maltophilia R551-3 6474583 YP_002030086.1 CDS Smal_3704 NC_011071.1 4173668 4174285 D KEGG: xcv:XCV0531 hypothetical protein; hypothetical protein 4173668..4174285 Stenotrophomonas maltophilia R551-3 6474584 YP_002030087.1 CDS Smal_3705 NC_011071.1 4174330 4176216 D PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: xom:XOO_0483 two-component system regulatory protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4174330..4176216 Stenotrophomonas maltophilia R551-3 6474585 YP_002030088.1 CDS Smal_3706 NC_011071.1 4176218 4178434 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: xcb:XC_0495 two-component system sensor protein; Hpt sensor hybrid histidine kinase 4176218..4178434 Stenotrophomonas maltophilia R551-3 6474586 YP_002030089.1 CDS Smal_3707 NC_011071.1 4178493 4178963 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: xcb:XC_0494 bacterioferritin; bacterioferritin complement(4178493..4178963) Stenotrophomonas maltophilia R551-3 6474587 YP_002030090.1 CDS Smal_3708 NC_011071.1 4179108 4179317 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: xcv:XCV0526 bacterioferritin-associated ferredoxin; BFD (2Fe-2S)-binding domain-containing protein complement(4179108..4179317) Stenotrophomonas maltophilia R551-3 6474588 YP_002030091.1 CDS Smal_3709 NC_011071.1 4179426 4180046 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(4179426..4180046) Stenotrophomonas maltophilia R551-3 6474589 YP_002030092.1 CDS rpsI NC_011071.1 4180667 4181059 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4180667..4181059) Stenotrophomonas maltophilia R551-3 6474592 YP_002030093.1 CDS rplM NC_011071.1 4181062 4181490 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4181062..4181490) Stenotrophomonas maltophilia R551-3 6474593 YP_002030094.1 CDS Smal_3712 NC_011071.1 4181687 4182331 D KEGG: xom:XOO_3930 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 4181687..4182331 Stenotrophomonas maltophilia R551-3 6474594 YP_002030095.1 CDS Smal_3713 NC_011071.1 4182429 4182749 R PFAM: small multidrug resistance protein; KEGG: xcb:XC_0488 SugE protein; small multidrug resistance protein complement(4182429..4182749) Stenotrophomonas maltophilia R551-3 6474595 YP_002030096.1 CDS Smal_3714 NC_011071.1 4182917 4183711 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(4182917..4183711) Stenotrophomonas maltophilia R551-3 6474596 YP_002030097.1 CDS Smal_3715 NC_011071.1 4183861 4184550 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4183861..4184550 Stenotrophomonas maltophilia R551-3 6474597 YP_002030098.1 CDS Smal_3716 NC_011071.1 4184690 4185451 D PFAM: protein of unknown function DUF81; KEGG: nmu:Nmul_A2681 protein of unknown function DUF81; hypothetical protein 4184690..4185451 Stenotrophomonas maltophilia R551-3 6474598 YP_002030099.1 CDS Smal_3717 NC_011071.1 4185540 4186256 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: xac:XAC0482 hypothetical protein; haloacid dehalogenase domain-containing protein hydrolase complement(4185540..4186256) Stenotrophomonas maltophilia R551-3 6474599 YP_002030100.1 CDS trpC NC_011071.1 4186253 4187047 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(4186253..4187047) Stenotrophomonas maltophilia R551-3 6474600 YP_002030101.1 CDS trpD NC_011071.1 4187122 4188153 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(4187122..4188153) Stenotrophomonas maltophilia R551-3 6474601 YP_002030102.1 CDS Smal_3720 NC_011071.1 4188170 4188757 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(4188170..4188757) Stenotrophomonas maltophilia R551-3 6474602 YP_002030103.1 CDS Smal_3721 NC_011071.1 4188760 4189539 R PFAM: protein of unknown function DUF541; KEGG: xcv:XCV0507 putative secreted protein; hypothetical protein complement(4188760..4189539) Stenotrophomonas maltophilia R551-3 6474603 YP_002030104.1 CDS Smal_3722 NC_011071.1 4189607 4191082 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(4189607..4191082) Stenotrophomonas maltophilia R551-3 6474604 YP_002030105.1 CDS Smal_3723 NC_011071.1 4191375 4192328 R cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase complement(4191375..4192328) Stenotrophomonas maltophilia R551-3 6474605 YP_002030106.1 CDS Smal_3724 NC_011071.1 4192611 4193093 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05438 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 complement(4192611..4193093) Stenotrophomonas maltophilia R551-3 6474606 YP_002030107.1 CDS Smal_3725 NC_011071.1 4193152 4193826 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(4193152..4193826) Stenotrophomonas maltophilia R551-3 6474607 YP_002030108.1 CDS Smal_3726 NC_011071.1 4193857 4194222 R PFAM: heat shock protein DnaJ domain protein; KEGG: xoo:XOO4053 hypothetical protein; heat shock protein DnaJ domain-containing protein complement(4193857..4194222) Stenotrophomonas maltophilia R551-3 6474608 YP_002030109.1 CDS Smal_3727 NC_011071.1 4194328 4195254 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4194328..4195254 Stenotrophomonas maltophilia R551-3 6474609 YP_002030110.1 CDS Smal_3728 NC_011071.1 4195475 4195960 D PFAM: protein of unknown function DUF962; KEGG: xcb:XC_0462 hypothetical protein; hypothetical protein 4195475..4195960 Stenotrophomonas maltophilia R551-3 6474610 YP_002030111.1 CDS Smal_3729 NC_011071.1 4196294 4199125 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 4196294..4199125 Stenotrophomonas maltophilia R551-3 6474611 YP_002030112.1 CDS Smal_3730 NC_011071.1 4199125 4199517 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 4199125..4199517 Stenotrophomonas maltophilia R551-3 6474612 YP_002030113.1 CDS Smal_3731 NC_011071.1 4199514 4201049 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 4199514..4201049 Stenotrophomonas maltophilia R551-3 6474613 YP_002030114.1 CDS Smal_3732 NC_011071.1 4201046 4201552 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 4201046..4201552 Stenotrophomonas maltophilia R551-3 6474614 YP_002030115.1 CDS Smal_3733 NC_011071.1 4201549 4201833 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 4201549..4201833 Stenotrophomonas maltophilia R551-3 6474615 YP_002030116.1 CDS Smal_3734 NC_011071.1 4201830 4202219 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 4201830..4202219 Stenotrophomonas maltophilia R551-3 6474616 YP_002030117.1 CDS Smal_3735 NC_011071.1 4202588 4203553 R PFAM: sodium/calcium exchanger membrane region; KEGG: wsu:WS2173 hypothetical protein; sodium/calcium exchanger membrane protein complement(4202588..4203553) Stenotrophomonas maltophilia R551-3 6474617 YP_002030118.1 CDS Smal_3736 NC_011071.1 4203627 4204280 R KEGG: xcb:XC_0453 hypothetical protein; hypothetical protein complement(4203627..4204280) Stenotrophomonas maltophilia R551-3 6474618 YP_002030119.1 CDS Smal_3737 NC_011071.1 4204406 4204945 D KEGG: xcb:XC_0454 hypothetical protein; hypothetical protein 4204406..4204945 Stenotrophomonas maltophilia R551-3 6474619 YP_002030120.1 CDS Smal_3738 NC_011071.1 4205028 4206326 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(4205028..4206326) Stenotrophomonas maltophilia R551-3 6474620 YP_002030121.1 CDS Smal_3739 NC_011071.1 4206429 4207499 R KEGG: xac:XAC0452 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(4206429..4207499) Stenotrophomonas maltophilia R551-3 6474621 YP_002030122.1 CDS Smal_3740 NC_011071.1 4207671 4208165 D PFAM: regulatory protein MarR; KEGG: xac:XAC0451 transcriptional regulator MarR/EmrR family; MarR family transcriptional regulator 4207671..4208165 Stenotrophomonas maltophilia R551-3 6474622 YP_002030123.1 CDS Smal_3741 NC_011071.1 4208394 4209365 D PFAM: protein of unknown function DUF1016; KEGG: rme:Rmet_1237 protein of unknown function DUF1016; hypothetical protein 4208394..4209365 Stenotrophomonas maltophilia R551-3 6474623 YP_002030124.1 CDS Smal_3742 NC_011071.1 4209384 4210523 R KEGG: bpt:Bpet1310 hypothetical protein; hypothetical protein complement(4209384..4210523) Stenotrophomonas maltophilia R551-3 6474624 YP_002030125.1 CDS Smal_3743 NC_011071.1 4210776 4211375 R KEGG: xcv:XCV0480 putative thioredoxin; putative thioredoxin complement(4210776..4211375) Stenotrophomonas maltophilia R551-3 6474625 YP_002030126.1 CDS Smal_3744 NC_011071.1 4211395 4212894 R KEGG: xcv:XCV0479 proton-dependent oligopeptide transporter family protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter complement(4211395..4212894) Stenotrophomonas maltophilia R551-3 6474626 YP_002030127.1 CDS Smal_3745 NC_011071.1 4213075 4213950 R PFAM: tryptophan 23-dioxygenase; KEGG: xcb:XC_0446 tryptophan 2,3-dioxygenase; tryptophan 23-dioxygenase complement(4213075..4213950) Stenotrophomonas maltophilia R551-3 6474627 YP_002030128.1 CDS Smal_3746 NC_011071.1 4214286 4215368 D KEGG: xcb:XC_0444 pyruvate dehydrogenase E1 alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 4214286..4215368 Stenotrophomonas maltophilia R551-3 6474628 YP_002030129.1 CDS Smal_3747 NC_011071.1 4215361 4216428 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: xcv:XCV0475 putative pyruvate dehydrogenase E1 component; transketolase central region 4215361..4216428 Stenotrophomonas maltophilia R551-3 6474629 YP_002030130.1 CDS Smal_3748 NC_011071.1 4216430 4216783 D PFAM: SH3 domain protein; Variant SH3 domain protein; KEGG: xcv:XCV0474 hypothetical protein; Variant SH3 domain-containing protein 4216430..4216783 Stenotrophomonas maltophilia R551-3 6474630 YP_002030131.1 CDS Smal_3749 NC_011071.1 4216780 4218168 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: xac:XAC0443 branched-chain alpha-keto acid dehydrogenase subunit E2; branched-chain alpha-keto acid dehydrogenase subunit E2 4216780..4218168 Stenotrophomonas maltophilia R551-3 6474631 YP_002030132.1 CDS Smal_3750 NC_011071.1 4218474 4219424 D hypothetical protein 4218474..4219424 Stenotrophomonas maltophilia R551-3 6474632 YP_002030133.1 CDS Smal_3751 NC_011071.1 4219461 4219847 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bbt:BBta_4163 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(4219461..4219847) Stenotrophomonas maltophilia R551-3 6474633 YP_002030134.1 CDS Smal_3752 NC_011071.1 4220091 4220798 R PFAM: Helix-turn-helix type 11 domain protein; KEGG: bpt:Bpet1599 hypothetical protein; helix-turn-helix type 11 domain-containing protein complement(4220091..4220798) Stenotrophomonas maltophilia R551-3 6474634 YP_002030135.1 CDS Smal_3753 NC_011071.1 4220798 4221433 R PFAM: Semialdehyde dehydrogenase NAD - binding; NAD-dependent epimerase/dehydratase; KEGG: xac:XAC0432 hypothetical protein; NAD-dependent epimerase/dehydratase complement(4220798..4221433) Stenotrophomonas maltophilia R551-3 6474635 YP_002030136.1 CDS Smal_3754 NC_011071.1 4221540 4223078 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcb:XC_0420 hypothetical protein; diguanylate cyclase 4221540..4223078 Stenotrophomonas maltophilia R551-3 6474636 YP_002030137.1 CDS Smal_3755 NC_011071.1 4223186 4224112 R PFAM: protein of unknown function DUF808; KEGG: xcb:XC_0418 hypothetical protein; hypothetical protein complement(4223186..4224112) Stenotrophomonas maltophilia R551-3 6474637 YP_002030138.1 CDS Smal_3756 NC_011071.1 4224278 4225969 D PFAM: ABC-1 domain protein; KEGG: xcb:XC_0417 ABC transporter substrate binding protein; ABC-1 domain-containing protein 4224278..4225969 Stenotrophomonas maltophilia R551-3 6474638 YP_002030139.1 CDS Smal_3757 NC_011071.1 4226211 4228316 D catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4226211..4228316 Stenotrophomonas maltophilia R551-3 6474639 YP_002030140.1 CDS Smal_3758 NC_011071.1 4228940 4231369 R PFAM: MscS Mechanosensitive ion channel; KEGG: xac:XAC0420 hypothetical protein; mechanosensitive ion channel MscS complement(4228940..4231369) Stenotrophomonas maltophilia R551-3 6474640 YP_002030141.1 CDS Smal_3759 NC_011071.1 4231457 4231705 R hypothetical protein complement(4231457..4231705) Stenotrophomonas maltophilia R551-3 6474641 YP_002030142.1 CDS Smal_3760 NC_011071.1 4231888 4232382 D PFAM: Lipocalin family protein; KEGG: xac:XAC3956 outer membrane lipoprotein Blc; lipocalin family protein 4231888..4232382 Stenotrophomonas maltophilia R551-3 6474642 YP_002030143.1 CDS Smal_3761 NC_011071.1 4232396 4233604 D PFAM: FAD dependent oxidoreductase; KEGG: xac:XAC2051 oxidoreductase; FAD dependent oxidoreductase 4232396..4233604 Stenotrophomonas maltophilia R551-3 6474643 YP_002030144.1 CDS Smal_3762 NC_011071.1 4233731 4234213 D KEGG: xcb:XC_1161 hypothetical protein; hypothetical protein 4233731..4234213 Stenotrophomonas maltophilia R551-3 6474644 YP_002030145.1 CDS Smal_3763 NC_011071.1 4234298 4234732 R KEGG: xcb:XC_0025 hypothetical protein; hypothetical protein complement(4234298..4234732) Stenotrophomonas maltophilia R551-3 6474645 YP_002030146.1 CDS Smal_3764 NC_011071.1 4234884 4235174 D KEGG: psa:PST_0852 predicted membrane protein; membrane protein 4234884..4235174 Stenotrophomonas maltophilia R551-3 6474646 YP_002030147.1 CDS Smal_3765 NC_011071.1 4235174 4235833 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pla:Plav_0928 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 4235174..4235833 Stenotrophomonas maltophilia R551-3 6474647 YP_002030148.1 CDS Smal_3766 NC_011071.1 4235830 4237149 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: mmr:Mmar10_0937 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4235830..4237149 Stenotrophomonas maltophilia R551-3 6474648 YP_002030149.1 CDS Smal_3767 NC_011071.1 4237693 4238013 R KEGG: par:Psyc_1584 hypothetical protein; hypothetical protein complement(4237693..4238013) Stenotrophomonas maltophilia R551-3 6474649 YP_002030150.1 CDS Smal_3768 NC_011071.1 4238057 4239946 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(4238057..4239946) Stenotrophomonas maltophilia R551-3 6474650 YP_002030151.1 CDS Smal_3769 NC_011071.1 4240138 4240989 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4240138..4240989 Stenotrophomonas maltophilia R551-3 6474651 YP_002030152.1 CDS Smal_3770 NC_011071.1 4241108 4242016 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: xcb:XC_0394 aspartyl/asparaginyl beta-hydroxylase; Aspartyl/Asparaginyl beta-hydroxylase complement(4241108..4242016) Stenotrophomonas maltophilia R551-3 6474652 YP_002030153.1 CDS Smal_3771 NC_011071.1 4242450 4243109 D PFAM: protein of unknown function RIO1; KEGG: xcv:XCV4042 putative kinase; Mn2+-dependent serine/threonine protein kinase 4242450..4243109 Stenotrophomonas maltophilia R551-3 6474653 YP_002030154.1 CDS Smal_3772 NC_011071.1 4243225 4243563 R PFAM: nitrogen regulatory protein P-II; KEGG: xcb:XC_3957 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(4243225..4243563) Stenotrophomonas maltophilia R551-3 6474654 YP_002030155.1 CDS Smal_3773 NC_011071.1 4243719 4243970 D PFAM: protein of unknown function DUF526; KEGG: xac:XAC3930 hypothetical protein; hypothetical protein 4243719..4243970 Stenotrophomonas maltophilia R551-3 6474655 YP_002030156.1 CDS Smal_3774 NC_011071.1 4244096 4244530 D KEGG: bcm:Bcenmc03_5137 rifampin ADP-ribosyl transferase; rifampin ADP-ribosyl transferase 4244096..4244530 Stenotrophomonas maltophilia R551-3 6474656 YP_002030157.1 CDS Smal_3775 NC_011071.1 4244535 4244969 R KEGG: xcv:XCV0133 hypothetical protein; hypothetical protein complement(4244535..4244969) Stenotrophomonas maltophilia R551-3 6474657 YP_002030158.1 CDS Smal_3776 NC_011071.1 4245301 4247538 D KEGG: cbe:Cbei_2045 AAA ATPase; hypothetical protein 4245301..4247538 Stenotrophomonas maltophilia R551-3 6474658 YP_002030159.1 CDS Smal_3777 NC_011071.1 4247676 4248041 R hypothetical protein complement(4247676..4248041) Stenotrophomonas maltophilia R551-3 6474659 YP_002030160.1 CDS Smal_3778 NC_011071.1 4248109 4248699 R KEGG: sbm:Shew185_1693 hypothetical protein; hypothetical protein complement(4248109..4248699) Stenotrophomonas maltophilia R551-3 6474660 YP_002030161.1 CDS Smal_3779 NC_011071.1 4249348 4249704 D hypothetical protein 4249348..4249704 Stenotrophomonas maltophilia R551-3 6474661 YP_002030162.1 CDS Smal_3780 NC_011071.1 4249905 4250567 D PFAM: protein of unknown function DUF1629; KEGG: xac:XAC2246 hypothetical protein; hypothetical protein 4249905..4250567 Stenotrophomonas maltophilia R551-3 6474662 YP_002030163.1 CDS Smal_3781 NC_011071.1 4250609 4253284 D KEGG: aav:Aave_0538 hypothetical protein; hypothetical protein 4250609..4253284 Stenotrophomonas maltophilia R551-3 6474663 YP_002030164.1 CDS Smal_3782 NC_011071.1 4253491 4254990 D KEGG: xcb:XC_3959 competence related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4253491..4254990 Stenotrophomonas maltophilia R551-3 6474664 YP_002030165.1 CDS Smal_3783 NC_011071.1 4255115 4255501 R hypothetical protein complement(4255115..4255501) Stenotrophomonas maltophilia R551-3 6474665 YP_002030166.1 CDS Smal_3784 NC_011071.1 4255622 4257940 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdi:GDI0553 putative TonB-dependent receptor; TonB-dependent receptor complement(4255622..4257940) Stenotrophomonas maltophilia R551-3 6474666 YP_002030167.1 CDS Smal_3785 NC_011071.1 4258385 4259218 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(4258385..4259218) Stenotrophomonas maltophilia R551-3 6474667 YP_002030168.1 CDS Smal_3786 NC_011071.1 4259368 4260030 D PFAM: Exopolysaccharide synthesis ExoD; KEGG: sme:SMc00353 putative transmembrane protein; Exopolysaccharide synthesis ExoD 4259368..4260030 Stenotrophomonas maltophilia R551-3 6474668 YP_002030169.1 CDS Smal_3787 NC_011071.1 4260170 4261480 R KEGG: neu:NE2501 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase complement(4260170..4261480) Stenotrophomonas maltophilia R551-3 6474669 YP_002030170.1 CDS Smal_3788 NC_011071.1 4261473 4261913 R KEGG: neu:NE2500 hypothetical protein; hypothetical protein complement(4261473..4261913) Stenotrophomonas maltophilia R551-3 6474670 YP_002030171.1 CDS Smal_3789 NC_011071.1 4262224 4263990 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: xcv:XCV2993 extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 4262224..4263990 Stenotrophomonas maltophilia R551-3 6474671 YP_002030172.1 CDS Smal_3790 NC_011071.1 4263990 4264583 D KEGG: xcv:XCV2994 putative secreted protein; hypothetical protein 4263990..4264583 Stenotrophomonas maltophilia R551-3 6474672 YP_002030173.1 CDS Smal_3791 NC_011071.1 4264710 4265504 R PFAM: electron transport protein SCO1/SenC; KEGG: aav:Aave_3898 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(4264710..4265504) Stenotrophomonas maltophilia R551-3 6474673 YP_002030174.1 CDS Smal_3792 NC_011071.1 4265525 4265857 R TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: eca:ECA1140 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV complement(4265525..4265857) Stenotrophomonas maltophilia R551-3 6474674 YP_002030175.1 CDS Smal_3793 NC_011071.1 4265859 4266494 R TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ses:SARI_02493 hypothetical protein; cytochrome o ubiquinol oxidase subunit III complement(4265859..4266494) Stenotrophomonas maltophilia R551-3 6474675 YP_002030176.1 CDS Smal_3794 NC_011071.1 4266491 4268467 R KEGG: mfa:Mfla_1294 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I complement(4266491..4268467) Stenotrophomonas maltophilia R551-3 6474676 YP_002030177.1 CDS Smal_3795 NC_011071.1 4268473 4269378 R TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: yen:YE3141 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II complement(4268473..4269378) Stenotrophomonas maltophilia R551-3 6474677 YP_002030178.1 CDS Smal_3796 NC_011071.1 4269562 4270977 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bav:BAV1837 GntR-family transcriptional regulator; GntR family transcriptional regulator 4269562..4270977 Stenotrophomonas maltophilia R551-3 6474678 YP_002030179.1 CDS Smal_3797 NC_011071.1 4271050 4271310 D KEGG: csa:Csal_1496 hypothetical protein; hypothetical protein 4271050..4271310 Stenotrophomonas maltophilia R551-3 6474679 YP_002030180.1 CDS Smal_3798 NC_011071.1 4271310 4271909 D KEGG: pau:PA14_04020 hypothetical protein; hypothetical protein 4271310..4271909 Stenotrophomonas maltophilia R551-3 6474680 YP_002030181.1 CDS Smal_3799 NC_011071.1 4271919 4273433 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_4502 transcriptional regulator, GntR family with aminotransferase domain; GntR family transcriptional regulator 4271919..4273433 Stenotrophomonas maltophilia R551-3 6474681 YP_002030182.1 CDS Smal_3800 NC_011071.1 4273512 4274813 R PFAM: aminotransferase class V; KEGG: bbt:BBta_3802 putative aminotransferase; class V aminotransferase complement(4273512..4274813) Stenotrophomonas maltophilia R551-3 6474682 YP_002030183.1 CDS Smal_3801 NC_011071.1 4274813 4277215 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_2417 TonB-dependent receptor, plug; TonB-dependent receptor complement(4274813..4277215) Stenotrophomonas maltophilia R551-3 6474683 YP_002030184.1 CDS Smal_3802 NC_011071.1 4277456 4278127 D KEGG: xac:XAC0314 hypothetical protein; hypothetical protein 4277456..4278127 Stenotrophomonas maltophilia R551-3 6474684 YP_002030185.1 CDS Smal_3803 NC_011071.1 4278153 4280000 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: efa:EF2674 oligoendopeptidase F,plasmid; peptidase M3A and M3B thimet/oligopeptidase F complement(4278153..4280000) Stenotrophomonas maltophilia R551-3 6474685 YP_002030186.1 CDS Smal_3804 NC_011071.1 4280074 4280586 R KEGG: xcb:XC_0465 hypothetical protein; hypothetical protein complement(4280074..4280586) Stenotrophomonas maltophilia R551-3 6474686 YP_002030187.1 CDS Smal_3805 NC_011071.1 4280669 4281286 D PFAM: protein of unknown function DUF1105; KEGG: xac:XAC0589 hypothetical protein; hypothetical protein 4280669..4281286 Stenotrophomonas maltophilia R551-3 6474687 YP_002030188.1 CDS Smal_3806 NC_011071.1 4281341 4281775 R KEGG: uma:UM05853.1 hypothetical protein; hypothetical protein complement(4281341..4281775) Stenotrophomonas maltophilia R551-3 6474688 YP_002030189.1 CDS Smal_3807 NC_011071.1 4281776 4283200 R PFAM: short chain fatty acid transporter; KEGG: psb:Psyr_3239 short chain fatty acid transporter; short chain fatty acid transporter complement(4281776..4283200) Stenotrophomonas maltophilia R551-3 6474689 YP_002030190.1 CDS ubiA NC_011071.1 4283676 4284611 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(4283676..4284611) Stenotrophomonas maltophilia R551-3 6474690 YP_002030191.1 CDS Smal_3809 NC_011071.1 4284869 4285999 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: hne:HNE_0405 transcriptional regulator, AraC family; AraC family transcriptional regulator 4284869..4285999 Stenotrophomonas maltophilia R551-3 6474692 YP_002030192.1 CDS Smal_3810 NC_011071.1 4286082 4287959 D KEGG: gdi:GDI1375 hypothetical protein; hypothetical protein 4286082..4287959 Stenotrophomonas maltophilia R551-3 6474693 YP_002030193.1 CDS Smal_3811 NC_011071.1 4288003 4288410 R hypothetical protein complement(4288003..4288410) Stenotrophomonas maltophilia R551-3 6474694 YP_002030194.1 CDS Smal_3812 NC_011071.1 4288565 4289920 R PFAM: oxidoreductase domain protein; KEGG: pdi:BDI_1155 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein complement(4288565..4289920) Stenotrophomonas maltophilia R551-3 6474695 YP_002030195.1 CDS Smal_3813 NC_011071.1 4289986 4292961 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xfm:Xfasm12_1883 TonB-dependent receptor; TonB-dependent receptor complement(4289986..4292961) Stenotrophomonas maltophilia R551-3 6474696 YP_002030196.1 CDS Smal_3814 NC_011071.1 4293095 4296454 R PFAM: glycoside hydrolase family 31; coagulation factor 5/8 type domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: saz:Sama_0156 glycosyl hydrolase, family 31/fibronectin type III domain protein; glycoside hydrolase family protein complement(4293095..4296454) Stenotrophomonas maltophilia R551-3 6474697 YP_002030197.1 CDS Smal_3815 NC_011071.1 4296777 4297931 D PFAM: sugar isomerase (SIS); KEGG: sth:STH562 tagatose-6-phosphate aldose/ketose isomerase; sugar isomerase (SIS) 4296777..4297931 Stenotrophomonas maltophilia R551-3 6474698 YP_002030198.1 CDS Smal_3816 NC_011071.1 4297924 4298862 D PFAM: ROK family protein; KEGG: spe:Spro_2576 ROK family protein; ROK family protein 4297924..4298862 Stenotrophomonas maltophilia R551-3 6474699 YP_002030199.1 CDS Smal_3817 NC_011071.1 4298879 4300213 D KEGG: ypy:YPK_0994 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 4298879..4300213 Stenotrophomonas maltophilia R551-3 6474700 YP_002030200.1 CDS Smal_3818 NC_011071.1 4300248 4301024 D transcriptional repressor for the agaZVWA and agaSYBCDI operons; DNA-binding transcriptional regulator AgaR 4300248..4301024 Stenotrophomonas maltophilia R551-3 6474701 YP_002030201.1 CDS Smal_3819 NC_011071.1 4301021 4302148 D KEGG: cvi:CV_0556 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; N-acetylglucosamine-6-phosphate deacetylase 4301021..4302148 Stenotrophomonas maltophilia R551-3 6474702 YP_002030202.1 CDS Smal_3820 NC_011071.1 4302390 4304192 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ote:Oter_1004 general substrate transporter; general substrate transporter 4302390..4304192 Stenotrophomonas maltophilia R551-3 6474703 YP_002030203.1 CDS Smal_3821 NC_011071.1 4304245 4304661 R KEGG: ttj:TTHA0697 bifunctional preprotein translocase subunit SecD/SecF; hypothetical protein complement(4304245..4304661) Stenotrophomonas maltophilia R551-3 6474704 YP_002030204.1 CDS Smal_3822 NC_011071.1 4304712 4305263 R KEGG: dac:Daci_5301 hypothetical protein; hypothetical protein complement(4304712..4305263) Stenotrophomonas maltophilia R551-3 6474705 YP_002030205.1 CDS Smal_3823 NC_011071.1 4305322 4306017 R KEGG: xac:XAC0389 competence protein F; competence protein F complement(4305322..4306017) Stenotrophomonas maltophilia R551-3 6474706 YP_002030206.1 CDS Smal_3824 NC_011071.1 4306115 4306777 R KEGG: swd:Swoo_4306 hypothetical protein; hypothetical protein complement(4306115..4306777) Stenotrophomonas maltophilia R551-3 6474707 YP_002030207.1 CDS Smal_3825 NC_011071.1 4306774 4308117 R PFAM: Chloride channel core; KEGG: xcb:XC_1462 chloride channel; chloride channel core protein complement(4306774..4308117) Stenotrophomonas maltophilia R551-3 6474708 YP_002030208.1 CDS Smal_3826 NC_011071.1 4308459 4309865 D KEGG: hch:HCH_03617 hypothetical protein; hypothetical protein 4308459..4309865 Stenotrophomonas maltophilia R551-3 6474709 YP_002030209.1 CDS Smal_3827 NC_011071.1 4310024 4311067 D KEGG: xcv:XCV0403 biotin synthase BioB; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4310024..4311067 Stenotrophomonas maltophilia R551-3 6474710 YP_002030210.1 CDS Smal_3828 NC_011071.1 4311135 4312358 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 4311135..4312358 Stenotrophomonas maltophilia R551-3 6474711 YP_002030211.1 CDS Smal_3829 NC_011071.1 4312376 4313155 D KEGG: xom:XOO_0215 biotin biosynthesis protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein 4312376..4313155 Stenotrophomonas maltophilia R551-3 6474712 YP_002030212.1 CDS Smal_3830 NC_011071.1 4313185 4313964 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcb:XC_0396 oxidoreductase; short-chain dehydrogenase/reductase SDR 4313185..4313964 Stenotrophomonas maltophilia R551-3 6474713 YP_002030213.1 CDS Smal_3831 NC_011071.1 4313977 4314861 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: xcb:XC_0395 biotin synthesis protein; biotin biosynthesis protein BioC 4313977..4314861 Stenotrophomonas maltophilia R551-3 6474714 YP_002030214.1 CDS Smal_3832 NC_011071.1 4315016 4315648 R PFAM: protein of unknown function DUF218; KEGG: xac:XAC0380 hypothetical protein; hypothetical protein complement(4315016..4315648) Stenotrophomonas maltophilia R551-3 6474715 YP_002030215.1 CDS Smal_3833 NC_011071.1 4315645 4316607 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xcb:XC_0391 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta complement(4315645..4316607) Stenotrophomonas maltophilia R551-3 6474716 YP_002030216.1 CDS Smal_3834 NC_011071.1 4316767 4317252 D KEGG: xcb:XC_0390 hypothetical protein; hypothetical protein 4316767..4317252 Stenotrophomonas maltophilia R551-3 6474717 YP_002030217.1 CDS Smal_3835 NC_011071.1 4317745 4319634 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4317745..4319634 Stenotrophomonas maltophilia R551-3 6474718 YP_002030218.1 CDS Smal_3836 NC_011071.1 4319719 4321134 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xac:XAC0329 outer membrane protein; NodT family RND efflux system outer membrane lipoprotein complement(4319719..4321134) Stenotrophomonas maltophilia R551-3 6474719 YP_002030219.1 CDS Smal_3837 NC_011071.1 4321131 4324280 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: xac:XAC0328 multidrug efflux transporter; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(4321131..4324280) Stenotrophomonas maltophilia R551-3 6474720 YP_002030220.1 CDS Smal_3838 NC_011071.1 4324293 4325489 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC0327 acriflavin resistance protein; RND family efflux transporter MFP subunit complement(4324293..4325489) Stenotrophomonas maltophilia R551-3 6474721 YP_002030221.1 CDS Smal_3839 NC_011071.1 4325619 4327010 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: xac:XAC0326 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 4325619..4327010 Stenotrophomonas maltophilia R551-3 6474722 YP_002030222.1 CDS Smal_3840 NC_011071.1 4327007 4327696 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV0334 two-component system response regulator; winged helix family two component transcriptional regulator 4327007..4327696 Stenotrophomonas maltophilia R551-3 6474723 YP_002030223.1 CDS Smal_3841 NC_011071.1 4327830 4328651 D KEGG: rso:RSc0225 hypothetical protein; hypothetical protein 4327830..4328651 Stenotrophomonas maltophilia R551-3 6474724 YP_002030224.1 CDS Smal_3842 NC_011071.1 4328818 4329348 D KEGG: xac:XAC0348 transferase; transferase 4328818..4329348 Stenotrophomonas maltophilia R551-3 6474725 YP_002030225.1 CDS Smal_3843 NC_011071.1 4329472 4330161 D PFAM: RDD domain containing protein; KEGG: psa:PST_1159 predicted membrane protein; RDD domain-containing protein 4329472..4330161 Stenotrophomonas maltophilia R551-3 6474726 YP_002030226.1 CDS Smal_3844 NC_011071.1 4330158 4331150 D PFAM: protein of unknown function DUF95 transmembrane; KEGG: pfl:PFL_4790 integral membrane protein; hypothetical protein 4330158..4331150 Stenotrophomonas maltophilia R551-3 6474727 YP_002030227.1 CDS Smal_3845 NC_011071.1 4331140 4332756 D KEGG: pmy:Pmen_3318 hypothetical protein; hypothetical protein 4331140..4332756 Stenotrophomonas maltophilia R551-3 6474728 YP_002030228.1 CDS Smal_3846 NC_011071.1 4332753 4333937 D KEGG: psa:PST_1156 hypothetical protein; hypothetical protein 4332753..4333937 Stenotrophomonas maltophilia R551-3 6474729 YP_002030229.1 CDS Smal_3847 NC_011071.1 4333934 4334920 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3320 ATPase associated with various cellular activities, AAA_3; ATPase 4333934..4334920 Stenotrophomonas maltophilia R551-3 6474730 YP_002030230.1 CDS Smal_3848 NC_011071.1 4334917 4336215 D PFAM: protein of unknown function DUF58; KEGG: pfl:PFL_4794 hypothetical protein; hypothetical protein 4334917..4336215 Stenotrophomonas maltophilia R551-3 6474731 YP_002030231.1 CDS Smal_3849 NC_011071.1 4336469 4337647 R PFAM: glutathionylspermidine synthase; KEGG: xcb:XC_1277 synthetase/amidase; glutathionylspermidine synthase complement(4336469..4337647) Stenotrophomonas maltophilia R551-3 6474732 YP_002030232.1 CDS Smal_3850 NC_011071.1 4337655 4338227 R KEGG: xcb:XC_1276 hypothetical protein; hypothetical protein complement(4337655..4338227) Stenotrophomonas maltophilia R551-3 6474733 YP_002030233.1 CDS Smal_3851 NC_011071.1 4338601 4340439 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4338601..4340439 Stenotrophomonas maltophilia R551-3 6474734 YP_002030234.1 CDS Smal_3852 NC_011071.1 4340649 4341047 R hypothetical protein complement(4340649..4341047) Stenotrophomonas maltophilia R551-3 6474735 YP_002030235.1 CDS Smal_3853 NC_011071.1 4341171 4341782 D KEGG: xom:XOO_0436 hypothetical protein; hypothetical protein 4341171..4341782 Stenotrophomonas maltophilia R551-3 6474736 YP_002030236.1 CDS dinG NC_011071.1 4341840 4343942 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(4341840..4343942) Stenotrophomonas maltophilia R551-3 6474737 YP_002030237.1 CDS Smal_3855 NC_011071.1 4344110 4344463 R KEGG: xac:XAC4033 hypothetical protein; hypothetical protein complement(4344110..4344463) Stenotrophomonas maltophilia R551-3 6474738 YP_002030238.1 CDS aroE NC_011071.1 4344467 4345312 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4344467..4345312) Stenotrophomonas maltophilia R551-3 6474739 YP_002030239.1 CDS Smal_3857 NC_011071.1 4345361 4346233 D PFAM: WD40 domain protein beta Propeller; KEGG: xcb:XC_4042 hypothetical protein; WD40 domain-containing protein 4345361..4346233 Stenotrophomonas maltophilia R551-3 6474740 YP_002030240.1 CDS Smal_3858 NC_011071.1 4346267 4346536 R hypothetical protein complement(4346267..4346536) Stenotrophomonas maltophilia R551-3 6474741 YP_002030241.1 CDS Smal_3859 NC_011071.1 4346569 4347558 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(4346569..4347558) Stenotrophomonas maltophilia R551-3 6474742 YP_002030242.1 CDS Smal_3860 NC_011071.1 4347578 4348495 R PFAM: protein of unknown function UPF0187; KEGG: met:M446_0834 protein of unknown function UPF0187; hypothetical protein complement(4347578..4348495) Stenotrophomonas maltophilia R551-3 6474743 YP_002030243.1 CDS Smal_3861 NC_011071.1 4348618 4348866 R KEGG: xac:XAC4041 hypothetical protein; hypothetical protein complement(4348618..4348866) Stenotrophomonas maltophilia R551-3 6474744 YP_002030244.1 CDS Smal_3862 NC_011071.1 4349051 4349509 D KEGG: xac:XAC4042 hypothetical protein; hypothetical protein 4349051..4349509 Stenotrophomonas maltophilia R551-3 6474745 YP_002030245.1 CDS Smal_3863 NC_011071.1 4349601 4351403 R PFAM: protein of unknown function DUF885; KEGG: xcb:XC_4049 hypothetical protein; hypothetical protein complement(4349601..4351403) Stenotrophomonas maltophilia R551-3 6474746 YP_002030246.1 CDS Smal_3864 NC_011071.1 4351609 4352124 R KEGG: xcb:XC_4050 hypothetical protein; hypothetical protein complement(4351609..4352124) Stenotrophomonas maltophilia R551-3 6474747 YP_002030247.1 CDS Smal_3865 NC_011071.1 4352150 4354375 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xcb:XC_4051 dipeptidyl peptidase IV; peptidase S9B dipeptidylpeptidase IV domain-containing protein complement(4352150..4354375) Stenotrophomonas maltophilia R551-3 6474748 YP_002030248.1 CDS Smal_3866 NC_011071.1 4354546 4355235 R PFAM: Glutathione S-transferase domain; KEGG: xac:XAC4047 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(4354546..4355235) Stenotrophomonas maltophilia R551-3 6474749 YP_002030249.1 CDS Smal_3867 NC_011071.1 4355348 4355968 D PFAM: conserved hypothetical protein; KEGG: bbr:BB2252 hypothetical protein; hypothetical protein 4355348..4355968 Stenotrophomonas maltophilia R551-3 6474750 YP_002030250.1 CDS Smal_3868 NC_011071.1 4356169 4357173 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xcv:XCV4142 hypothetical protein; TonB family protein 4356169..4357173 Stenotrophomonas maltophilia R551-3 6474751 YP_002030251.1 CDS Smal_3869 NC_011071.1 4357257 4357511 R KEGG: bcn:Bcen_4127 hypothetical protein; hypothetical protein complement(4357257..4357511) Stenotrophomonas maltophilia R551-3 6474752 YP_002030252.1 CDS Smal_3870 NC_011071.1 4357589 4358386 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bpd:BURPS668_A1029 transcriptional regulator, AraC family; AraC family transcriptional regulator 4357589..4358386 Stenotrophomonas maltophilia R551-3 6474753 YP_002030253.1 CDS Smal_3871 NC_011071.1 4358487 4359197 D PFAM: protein of unknown function DUF1568; KEGG: hch:HCH_01378 transposase and inactivated derivatives; hypothetical protein 4358487..4359197 Stenotrophomonas maltophilia R551-3 6474754 YP_002030254.1 CDS Smal_3872 NC_011071.1 4359221 4360405 R KEGG: xac:XAC4053 ABC transporter sodium permease; ABC transporter sodium permease complement(4359221..4360405) Stenotrophomonas maltophilia R551-3 6474755 YP_002030255.1 CDS Smal_3873 NC_011071.1 4360402 4361148 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_4059 sodium ABC transporter ATP-binding protein; ABC transporter-like protein complement(4360402..4361148) Stenotrophomonas maltophilia R551-3 6474756 YP_002030256.1 CDS Smal_3874 NC_011071.1 4361145 4362671 R PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: xac:XAC4055 cysteine proteinase; TAP domain-containing protein complement(4361145..4362671) Stenotrophomonas maltophilia R551-3 6474757 YP_002030257.1 CDS Smal_3875 NC_011071.1 4362740 4363942 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase complement(4362740..4363942) Stenotrophomonas maltophilia R551-3 6474758 YP_002030258.1 CDS Smal_3876 NC_011071.1 4364098 4364625 D KEGG: bat:BAS2986 hypothetical protein; hypothetical protein 4364098..4364625 Stenotrophomonas maltophilia R551-3 6474759 YP_002030259.1 CDS Smal_3877 NC_011071.1 4364817 4365989 D PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor; chitin-binding protein 4364817..4365989 Stenotrophomonas maltophilia R551-3 6474760 YP_002030260.1 CDS Smal_3878 NC_011071.1 4366168 4367343 D PFAM: chitin-binding domain 3 protein; KEGG: pap:PSPA7_4667 chitin-binding protein CbpD precursor; chitin-binding protein 4366168..4367343 Stenotrophomonas maltophilia R551-3 6474761 YP_002030261.1 CDS Smal_3879 NC_011071.1 4367434 4368183 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: xcv:XCV4151 putative phenol hydroxylase component; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(4367434..4368183) Stenotrophomonas maltophilia R551-3 6474762 YP_002030262.1 CDS Smal_3880 NC_011071.1 4368268 4369236 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcb:XC_4066 ABC transporter ATP-binding protein; ABC transporter-like protein 4368268..4369236 Stenotrophomonas maltophilia R551-3 6474763 YP_002030263.1 CDS Smal_3881 NC_011071.1 4369233 4370024 D PFAM: ABC-2 type transporter; KEGG: xcb:XC_4068 permease; ABC-2 type transporter 4369233..4370024 Stenotrophomonas maltophilia R551-3 6474764 YP_002030264.1 CDS Smal_3882 NC_011071.1 4370384 4371151 D KEGG: hch:HCH_03986 hypothetical protein; hypothetical protein 4370384..4371151 Stenotrophomonas maltophilia R551-3 6474765 YP_002030265.1 CDS Smal_3883 NC_011071.1 4371458 4372396 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 4371458..4372396 Stenotrophomonas maltophilia R551-3 6474766 YP_002030266.1 CDS Smal_3884 NC_011071.1 4372405 4373295 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: ccr:CC_1055 hypothetical protein; NAD-dependent epimerase/dehydratase 4372405..4373295 Stenotrophomonas maltophilia R551-3 6474767 YP_002030267.1 CDS Smal_3885 NC_011071.1 4373362 4374165 R PFAM: TatD-related deoxyribonuclease; KEGG: xcv:XCV0322 TatD-related DNase; TatD-related deoxyribonuclease complement(4373362..4374165) Stenotrophomonas maltophilia R551-3 6474768 YP_002030268.1 CDS Smal_3886 NC_011071.1 4374227 4376731 D KEGG: xac:XAC0293 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 4374227..4376731 Stenotrophomonas maltophilia R551-3 6474769 YP_002030269.1 CDS Smal_3887 NC_011071.1 4376933 4377307 D KEGG: xac:XAC0292 hypothetical protein; hypothetical protein 4376933..4377307 Stenotrophomonas maltophilia R551-3 6474770 YP_002030270.1 CDS Smal_3888 NC_011071.1 4377455 4378024 R PFAM: pseudouridine synthase; KEGG: xcv:XCV0298 pseudouridylate synthase; pseudouridine synthase complement(4377455..4378024) Stenotrophomonas maltophilia R551-3 6474771 YP_002030271.1 CDS Smal_3889 NC_011071.1 4378063 4378323 R hypothetical protein complement(4378063..4378323) Stenotrophomonas maltophilia R551-3 6474772 YP_002030272.1 CDS Smal_3890 NC_011071.1 4378425 4379282 R KEGG: xcv:XCV0297 putative methyltransferase; putative methyltransferase complement(4378425..4379282) Stenotrophomonas maltophilia R551-3 6474773 YP_002030273.1 CDS Smal_3891 NC_011071.1 4379452 4380408 D PFAM: aldo/keto reductase; KEGG: xcv:XCV0296 putative oxidoreductase; aldo/keto reductase 4379452..4380408 Stenotrophomonas maltophilia R551-3 6474774 YP_002030274.1 CDS Smal_3892 NC_011071.1 4381484 4382608 D PFAM: band 7 protein; KEGG: xac:XAC3964 hypothetical protein; hypothetical protein 4381484..4382608 Stenotrophomonas maltophilia R551-3 6474776 YP_002030275.1 CDS Smal_3893 NC_011071.1 4382665 4383885 D PFAM: protein of unknown function UPF0027; KEGG: xcv:XCV4058 hypothetical protein; hypothetical protein 4382665..4383885 Stenotrophomonas maltophilia R551-3 6474777 YP_002030276.1 CDS Smal_3894 NC_011071.1 4384037 4384942 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bch:Bcen2424_3571 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4384037..4384942) Stenotrophomonas maltophilia R551-3 6474778 YP_002030277.1 CDS Smal_3895 NC_011071.1 4384932 4385387 R PFAM: protein of unknown function UPF0074; KEGG: pla:Plav_0970 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(4384932..4385387) Stenotrophomonas maltophilia R551-3 6474779 YP_002030278.1 CDS Smal_3896 NC_011071.1 4385571 4387691 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: xcb:XC_0286 chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4385571..4387691 Stenotrophomonas maltophilia R551-3 6474780 YP_002030279.1 CDS Smal_3897 NC_011071.1 4387889 4388791 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_II2155 probable LysR-family transcriptional regulator; LysR family transcriptional regulator complement(4387889..4388791) Stenotrophomonas maltophilia R551-3 6474781 YP_002030280.1 CDS Smal_3898 NC_011071.1 4388899 4390113 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_5537 major facilitator family transporter; major facilitator superfamily protein 4388899..4390113 Stenotrophomonas maltophilia R551-3 6474782 YP_002030281.1 CDS Smal_3899 NC_011071.1 4390202 4391011 D PFAM: aldo/keto reductase; KEGG: xcb:XC_0279 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 4390202..4391011 Stenotrophomonas maltophilia R551-3 6474783 YP_002030282.1 CDS Smal_3900 NC_011071.1 4391126 4391833 R PFAM: alpha/beta hydrolase fold; KEGG: xac:XAC0283 hydrolase; alpha/beta hydrolase fold domain-containing protein complement(4391126..4391833) Stenotrophomonas maltophilia R551-3 6474784 YP_002030283.1 CDS Smal_3901 NC_011071.1 4391972 4392352 D PFAM: protein of unknown function DUF74; KEGG: cvi:CV_4322 hypothetical protein; hypothetical protein 4391972..4392352 Stenotrophomonas maltophilia R551-3 6474785 YP_002030284.1 CDS Smal_3902 NC_011071.1 4392415 4395135 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: xac:XAC4077 hypothetical protein; N-acetyltransferase GCN5 complement(4392415..4395135) Stenotrophomonas maltophilia R551-3 6474786 YP_002030285.1 CDS Smal_3903 NC_011071.1 4395220 4396590 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: xac:XAC4078 Mg++ transporter; magnesium transporter complement(4395220..4396590) Stenotrophomonas maltophilia R551-3 6474787 YP_002030286.1 CDS Smal_3904 NC_011071.1 4396931 4398718 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: xac:XAC4080 glutathione-regulated potassium-efflux system protein; potassium efflux system protein 4396931..4398718 Stenotrophomonas maltophilia R551-3 6474788 YP_002030287.1 CDS Smal_3905 NC_011071.1 4398923 4402261 R PFAM: Ankyrin; KEGG: xcv:XCV4170 putative ankyrin-like membrane protein; ankyrin complement(4398923..4402261) Stenotrophomonas maltophilia R551-3 6474789 YP_002030288.1 CDS Smal_3906 NC_011071.1 4402254 4402514 R PFAM: protein of unknown function DUF709; KEGG: xcv:XCV4171 hypothetical protein; hypothetical protein complement(4402254..4402514) Stenotrophomonas maltophilia R551-3 6474790 YP_002030289.1 CDS Smal_3907 NC_011071.1 4402675 4403115 R KEGG: pen:PSEEN0343 hypothetical protein; hypothetical protein complement(4402675..4403115) Stenotrophomonas maltophilia R551-3 6474791 YP_002030290.1 CDS Smal_3908 NC_011071.1 4403178 4404416 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(4403178..4404416) Stenotrophomonas maltophilia R551-3 6474792 YP_002030291.1 CDS Smal_3909 NC_011071.1 4404416 4405147 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_4391 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(4404416..4405147) Stenotrophomonas maltophilia R551-3 6474793 YP_002030292.1 CDS Smal_3910 NC_011071.1 4405144 4405599 R KEGG: rme:Rmet_4390 hypothetical protein; hypothetical protein complement(4405144..4405599) Stenotrophomonas maltophilia R551-3 6474794 YP_002030293.1 CDS Smal_3911 NC_011071.1 4405596 4406780 R PFAM: Beta-ketoacyl synthase; KEGG: rme:Rmet_4389 beta-ketoacyl synthase; beta-ketoacyl synthase complement(4405596..4406780) Stenotrophomonas maltophilia R551-3 6474795 YP_002030294.1 CDS Smal_3912 NC_011071.1 4406777 4407334 R KEGG: rme:Rmet_4388 hypothetical protein; hypothetical protein complement(4406777..4407334) Stenotrophomonas maltophilia R551-3 6474796 YP_002030295.1 CDS Smal_3913 NC_011071.1 4407322 4408572 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rme:Rmet_4387 tryptophan halogenase; monooxygenase FAD-binding complement(4407322..4408572) Stenotrophomonas maltophilia R551-3 6474797 YP_002030296.1 CDS Smal_3914 NC_011071.1 4408626 4410980 R KEGG: rme:Rmet_4386 putative lipoprotein transmembrane; putative lipoprotein transmembrane complement(4408626..4410980) Stenotrophomonas maltophilia R551-3 6474798 YP_002030297.1 CDS Smal_3915 NC_011071.1 4410973 4411602 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rme:Rmet_4385 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(4410973..4411602) Stenotrophomonas maltophilia R551-3 6474799 YP_002030298.1 CDS Smal_3916 NC_011071.1 4411599 4412030 R PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4384 thioesterase superfamily; thioesterase superfamily protein complement(4411599..4412030) Stenotrophomonas maltophilia R551-3 6474800 YP_002030299.1 CDS Smal_3917 NC_011071.1 4412017 4413567 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: pen:PSEEN0356 phenylalanine/histidine ammonia-lyase; Histidine ammonia-lyase complement(4412017..4413567) Stenotrophomonas maltophilia R551-3 6474801 YP_002030300.1 CDS Smal_3918 NC_011071.1 4413557 4414498 R KEGG: rme:Rmet_4383 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(4413557..4414498) Stenotrophomonas maltophilia R551-3 6474802 YP_002030301.1 CDS Smal_3919 NC_011071.1 4414500 4415270 R PFAM: glycosyl transferase family 2; KEGG: psp:PSPPH_0424 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(4414500..4415270) Stenotrophomonas maltophilia R551-3 6474803 YP_002030302.1 CDS Smal_3920 NC_011071.1 4415260 4416945 R PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4381 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4415260..4416945) Stenotrophomonas maltophilia R551-3 6474804 YP_002030303.1 CDS Smal_3921 NC_011071.1 4416938 4417489 R KEGG: rme:Rmet_4380 hypothetical protein; hypothetical protein complement(4416938..4417489) Stenotrophomonas maltophilia R551-3 6474805 YP_002030304.1 CDS Smal_3922 NC_011071.1 4417512 4417769 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(4417512..4417769) Stenotrophomonas maltophilia R551-3 6474806 YP_002030305.1 CDS Smal_3923 NC_011071.1 4417787 4418044 R KEGG: csa:Csal_2749 acyl carrier protein, putative; acyl carrier protein complement(4417787..4418044) Stenotrophomonas maltophilia R551-3 6474807 YP_002030306.1 CDS Smal_3924 NC_011071.1 4418031 4418828 R PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(4418031..4418828) Stenotrophomonas maltophilia R551-3 6474808 YP_002030307.1 CDS Smal_3925 NC_011071.1 4418821 4419564 R KEGG: rme:Rmet_4376 hypothetical protein; hypothetical protein complement(4418821..4419564) Stenotrophomonas maltophilia R551-3 6474809 YP_002030308.1 CDS Smal_3926 NC_011071.1 4419782 4420795 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: xcb:XC_1301 quinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(4419782..4420795) Stenotrophomonas maltophilia R551-3 6474810 YP_002030309.1 CDS Smal_3927 NC_011071.1 4420797 4422194 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: xcv:XCV3129 quinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(4420797..4422194) Stenotrophomonas maltophilia R551-3 6474811 YP_002030310.1 CDS Smal_3928 NC_011071.1 4422323 4423522 R PFAM: protein of unknown function DUF214; KEGG: xac:XAC3641 ABC transporter permease; hypothetical protein complement(4422323..4423522) Stenotrophomonas maltophilia R551-3 6474812 YP_002030311.1 CDS Smal_3929 NC_011071.1 4423524 4424822 R PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein; hypothetical protein complement(4423524..4424822) Stenotrophomonas maltophilia R551-3 6474813 YP_002030312.1 CDS Smal_3930 NC_011071.1 4425141 4425356 R hypothetical protein complement(4425141..4425356) Stenotrophomonas maltophilia R551-3 6474814 YP_002030313.1 CDS Smal_3931 NC_011071.1 4425353 4426006 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pca:Pcar_3124 RNA polymerase, sigma-E factor; ECF subfamily RNA polymerase sigma-24 subunit complement(4425353..4426006) Stenotrophomonas maltophilia R551-3 6474815 YP_002030314.1 CDS Smal_3932 NC_011071.1 4426044 4426373 R hypothetical protein complement(4426044..4426373) Stenotrophomonas maltophilia R551-3 6474816 YP_002030315.1 CDS Smal_3933 NC_011071.1 4426541 4428910 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: xcb:XC_4105 dipeptidyl-peptidase; peptidase S9 prolyl oligopeptidase active site domain-containing protein 4426541..4428910 Stenotrophomonas maltophilia R551-3 6474817 YP_002030316.1 CDS Smal_3934 NC_011071.1 4428907 4429326 D PFAM: NUDIX hydrolase; KEGG: msm:MSMEG_4488 hydrolase, NUDIX family protein; NUDIX hydrolase 4428907..4429326 Stenotrophomonas maltophilia R551-3 6474818 YP_002030317.1 CDS Smal_3935 NC_011071.1 4429357 4429917 D KEGG: xcb:XC_4107 hypothetical protein; hypothetical protein 4429357..4429917 Stenotrophomonas maltophilia R551-3 6474819 YP_002030318.1 CDS Smal_3936 NC_011071.1 4429953 4431074 D hypothetical protein 4429953..4431074 Stenotrophomonas maltophilia R551-3 6474820 YP_002030319.1 CDS Smal_3937 NC_011071.1 4431112 4432728 D KEGG: mgr:MGG_00209 hypothetical protein; hypothetical protein 4431112..4432728 Stenotrophomonas maltophilia R551-3 6474821 YP_002030320.1 CDS Smal_3938 NC_011071.1 4432783 4433679 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 4432783..4433679 Stenotrophomonas maltophilia R551-3 6474822 YP_002030321.1 CDS Smal_3939 NC_011071.1 4433773 4435293 D hypothetical protein 4433773..4435293 Stenotrophomonas maltophilia R551-3 6474823 YP_002030322.1 CDS Smal_3940 NC_011071.1 4435354 4435833 R KEGG: reu:Reut_A3332 hypothetical protein; hypothetical protein complement(4435354..4435833) Stenotrophomonas maltophilia R551-3 6474824 YP_002030323.1 CDS Smal_3941 NC_011071.1 4436164 4438938 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(4436164..4438938) Stenotrophomonas maltophilia R551-3 6474825 YP_002030324.1 CDS Smal_3942 NC_011071.1 4439037 4439321 D KEGG: xcv:XCV4201 putative secreted protein; hypothetical protein 4439037..4439321 Stenotrophomonas maltophilia R551-3 6474826 YP_002030325.1 CDS Smal_3943 NC_011071.1 4439456 4439902 R PFAM: UspA domain protein; KEGG: xcv:XCV4245 universal stress protein family protein; UspA domain-containing protein complement(4439456..4439902) Stenotrophomonas maltophilia R551-3 6474827 YP_002030326.1 CDS Smal_3944 NC_011071.1 4440086 4440232 D hypothetical protein 4440086..4440232 Stenotrophomonas maltophilia R551-3 6474828 YP_002030327.1 CDS Smal_3945 NC_011071.1 4440317 4440871 R KEGG: pst:PSPTO_3337 hypothetical protein; hypothetical protein complement(4440317..4440871) Stenotrophomonas maltophilia R551-3 6474829 YP_002030328.1 CDS Smal_3946 NC_011071.1 4441050 4441376 R KEGG: pfl:PFL_2687 phosphatase; phosphatase complement(4441050..4441376) Stenotrophomonas maltophilia R551-3 6474830 YP_002030329.1 CDS uvrD NC_011071.1 4441475 4443667 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(4441475..4443667) Stenotrophomonas maltophilia R551-3 6474831 YP_002030330.1 CDS Smal_3948 NC_011071.1 4443677 4445098 R KEGG: xcb:XC_4116 hypothetical protein; hypothetical protein complement(4443677..4445098) Stenotrophomonas maltophilia R551-3 6474832 YP_002030331.1 CDS Smal_3949 NC_011071.1 4445144 4446562 R PFAM: phospholipase D/Transphosphatidylase; KEGG: xcb:XC_4117 cardiolipin synthase; phospholipase D/transphosphatidylase complement(4445144..4446562) Stenotrophomonas maltophilia R551-3 6474833 YP_002030332.1 CDS rpmG NC_011071.1 4446805 4446969 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(4446805..4446969) Stenotrophomonas maltophilia R551-3 6474834 YP_002030333.1 CDS rpmB NC_011071.1 4446983 4447219 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(4446983..4447219) Stenotrophomonas maltophilia R551-3 6474835 YP_002030334.1 CDS Smal_3952 NC_011071.1 4447541 4448050 R KEGG: lpc:LPC_0800 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(4447541..4448050) Stenotrophomonas maltophilia R551-3 6474836 YP_002030335.1 CDS Smal_3953 NC_011071.1 4448216 4449109 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_1308 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4448216..4449109) Stenotrophomonas maltophilia R551-3 6474837 YP_002030336.1 CDS Smal_3954 NC_011071.1 4449218 4449607 D PFAM: Endoribonuclease L-PSP; KEGG: csa:Csal_0759 endoribonuclease L-PSP; endoribonuclease L-PSP 4449218..4449607 Stenotrophomonas maltophilia R551-3 6474838 YP_002030337.1 CDS Smal_3955 NC_011071.1 4450062 4450397 D hypothetical protein 4450062..4450397 Stenotrophomonas maltophilia R551-3 6474839 YP_002030338.1 CDS Smal_3956 NC_011071.1 4450454 4451707 D PFAM: outer membrane efflux protein; KEGG: cak:Caul_2284 outer membrane efflux protein; outer membrane efflux protein 4450454..4451707 Stenotrophomonas maltophilia R551-3 6474840 YP_002030339.1 CDS Smal_3957 NC_011071.1 4451704 4452909 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cak:Caul_2295 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4451704..4452909 Stenotrophomonas maltophilia R551-3 6474841 YP_002030340.1 CDS Smal_3958 NC_011071.1 4452920 4456129 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cak:Caul_2297 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux pump 4452920..4456129 Stenotrophomonas maltophilia R551-3 6474842 YP_002030341.1 CDS Smal_3959 NC_011071.1 4456263 4458035 R PFAM: protein of unknown function DUF885; KEGG: xcb:XC_4129 hypothetical protein; hypothetical protein complement(4456263..4458035) Stenotrophomonas maltophilia R551-3 6474843 YP_002030342.1 CDS Smal_3960 NC_011071.1 4458273 4459217 D PFAM: Integrase catalytic region; KEGG: bpe:BP1810 transposase; integrase catalytic subunit 4458273..4459217 Stenotrophomonas maltophilia R551-3 6474844 YP_002030343.1 CDS Smal_3961 NC_011071.1 4459429 4459779 R PFAM: lipid A biosynthesis domain protein; KEGG: xcb:XC_3939 hypothetical protein; lipid A biosynthesis domain-containing protein complement(4459429..4459779) Stenotrophomonas maltophilia R551-3 6474845 YP_002030344.1 CDS Smal_3962 NC_011071.1 4459776 4460498 R PFAM: glycosyl transferase family 2; KEGG: xac:XAC3909 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase complement(4459776..4460498) Stenotrophomonas maltophilia R551-3 6474846 YP_002030345.1 CDS Smal_3963 NC_011071.1 4460589 4461554 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: xac:XAC3908 nucleotide sugar epimerase; NAD-dependent epimerase/dehydratase complement(4460589..4461554) Stenotrophomonas maltophilia R551-3 6474847 YP_002030346.1 CDS Smal_3964 NC_011071.1 4461600 4462325 R KEGG: xcb:XC_3936 hypothetical protein; hypothetical protein complement(4461600..4462325) Stenotrophomonas maltophilia R551-3 6474848 YP_002030347.1 CDS Smal_3965 NC_011071.1 4462450 4463373 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: xcb:XC_3934 chromosome partitioning protein; parB-like partition protein complement(4462450..4463373) Stenotrophomonas maltophilia R551-3 6474849 YP_002030348.1 CDS Smal_3966 NC_011071.1 4463373 4464170 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xac:XAC3905 chromosome partitioning protein; Cobyrinic acid ac-diamide synthase complement(4463373..4464170) Stenotrophomonas maltophilia R551-3 6474850 YP_002030349.1 CDS gidB NC_011071.1 4464283 4464921 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4464283..4464921) Stenotrophomonas maltophilia R551-3 6474851 YP_002030350.1 CDS Smal_3968 NC_011071.1 4464961 4465560 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: xac:XAC4168 HetI protein; 4'-phosphopantetheinyl transferase complement(4464961..4465560) Stenotrophomonas maltophilia R551-3 6474852 YP_002030351.1 CDS Smal_3969 NC_011071.1 4465645 4465896 D PFAM: Transglycosylase-associated protein; KEGG: xac:XAC4169 transglycosylase associated protein; transglycosylase-associated protein 4465645..4465896 Stenotrophomonas maltophilia R551-3 6474853 YP_002030352.1 CDS Smal_3970 NC_011071.1 4465969 4466745 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: xcb:XC_4135 exodeoxyribonuclease III; exodeoxyribonuclease III complement(4465969..4466745) Stenotrophomonas maltophilia R551-3 6474854 YP_002030353.1 CDS Smal_3971 NC_011071.1 4466901 4468310 R PFAM: Aldehyde Dehydrogenase_; KEGG: bcs:BCAN_B1080 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(4466901..4468310) Stenotrophomonas maltophilia R551-3 6474855 YP_002030354.1 CDS Smal_3972 NC_011071.1 4468495 4470156 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: har:HEAR1389 putative sugar transport protein; major facilitator superfamily protein complement(4468495..4470156) Stenotrophomonas maltophilia R551-3 6474856 YP_002030355.1 CDS Smal_3973 NC_011071.1 4470255 4471682 R KEGG: xcv:XCV4274 putative secreted protein; hypothetical protein complement(4470255..4471682) Stenotrophomonas maltophilia R551-3 6474857 YP_002030356.1 CDS Smal_3974 NC_011071.1 4471928 4473871 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4471928..4473871 Stenotrophomonas maltophilia R551-3 6474858 YP_002030357.1 CDS Smal_3975 NC_011071.1 4473993 4474658 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: xcb:XC_4150 two-component system regulatory protein; two component LuxR family transcriptional regulator 4473993..4474658 Stenotrophomonas maltophilia R551-3 6474859 YP_002030358.1 CDS Smal_3976 NC_011071.1 4474713 4475168 R KEGG: ppf:Pput_5083 protein of unknown function DUF1568; hypothetical protein complement(4474713..4475168) Stenotrophomonas maltophilia R551-3 6474860 YP_002030359.1 CDS Smal_3977 NC_011071.1 4475335 4475910 R PFAM: protein of unknown function DUF204; KEGG: xcb:XC_4166 hypothetical protein; hypothetical protein complement(4475335..4475910) Stenotrophomonas maltophilia R551-3 6474861 YP_002030360.1 CDS Smal_3978 NC_011071.1 4476351 4479809 R KEGG: xom:XOO_0308 two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(4476351..4479809) Stenotrophomonas maltophilia R551-3 6474862 YP_002030361.1 CDS Smal_3979 NC_011071.1 4479945 4482092 R KEGG: xom:XOO_3477 hypothetical protein; hypothetical protein complement(4479945..4482092) Stenotrophomonas maltophilia R551-3 6474863 YP_002030362.1 CDS Smal_3980 NC_011071.1 4482282 4486139 R PFAM: protein of unknown function DUF490; KEGG: xcb:XC_4175 hypothetical protein; hypothetical protein complement(4482282..4486139) Stenotrophomonas maltophilia R551-3 6474864 YP_002030363.1 CDS Smal_3981 NC_011071.1 4486136 4487932 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: xoo:XOO4305 hypothetical protein; surface antigen (D15) complement(4486136..4487932) Stenotrophomonas maltophilia R551-3 6474865 YP_002030364.1 CDS glyS NC_011071.1 4488145 4490220 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(4488145..4490220) Stenotrophomonas maltophilia R551-3 6474866 YP_002030365.1 CDS glyQ NC_011071.1 4490292 4491203 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(4490292..4491203) Stenotrophomonas maltophilia R551-3 6474867 YP_002030366.1 CDS Smal_3984 NC_011071.1 4491287 4493122 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: xcb:XC_4179 general secretory pathway related protein; type II secretion system protein E 4491287..4493122 Stenotrophomonas maltophilia R551-3 6474868 YP_002030367.1 CDS Smal_3985 NC_011071.1 4493094 4493840 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 4493094..4493840 Stenotrophomonas maltophilia R551-3 6474869 YP_002030368.1 CDS Smal_3986 NC_011071.1 4493892 4494803 D KEGG: xcb:XC_4181 hypothetical protein; hypothetical protein 4493892..4494803 Stenotrophomonas maltophilia R551-3 6474870 YP_002030369.1 CDS Smal_3987 NC_011071.1 4494894 4495643 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: xcv:XCV4319 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC complement(4494894..4495643) Stenotrophomonas maltophilia R551-3 6474871 YP_002030370.1 CDS Smal_3988 NC_011071.1 4495640 4496137 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: xcb:XC_4183 sec-independent translocase; twin-arginine translocation protein subunit TatB complement(4495640..4496137) Stenotrophomonas maltophilia R551-3 6474872 YP_002030371.1 CDS tatA NC_011071.1 4496153 4496380 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(4496153..4496380) Stenotrophomonas maltophilia R551-3 6474873 YP_002030372.1 CDS Smal_3990 NC_011071.1 4496456 4497355 R PFAM: protein of unknown function DUF500; KEGG: xcv:XCV4322 putative secreted protein; hypothetical protein complement(4496456..4497355) Stenotrophomonas maltophilia R551-3 6474874 YP_002030373.1 CDS hemH NC_011071.1 4497521 4498483 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 4497521..4498483 Stenotrophomonas maltophilia R551-3 6474875 YP_002030374.1 CDS Smal_3992 NC_011071.1 4498480 4499334 D PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV4324 hydrolase of the alpha/beta fold superfamily; alpha/beta hydrolase fold domain-containing protein 4498480..4499334 Stenotrophomonas maltophilia R551-3 6474876 YP_002030375.1 CDS Smal_3993 NC_011071.1 4499625 4501730 D PFAM: chemotaxis sensory transducer; PAS fold domain protein; KEGG: xac:XAC1897 chemotaxis protein; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer 4499625..4501730 Stenotrophomonas maltophilia R551-3 6474877 YP_002030376.1 CDS Smal_3994 NC_011071.1 4513639 4514826 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease; benzoate transporter 4513639..4514826 Stenotrophomonas maltophilia R551-3 6474888 YP_002030377.1 CDS Smal_3995 NC_011071.1 4514833 4515606 R KEGG: reu:Reut_B3543 hypothetical protein; hypothetical protein complement(4514833..4515606) Stenotrophomonas maltophilia R551-3 6474889 YP_002030378.1 CDS Smal_3996 NC_011071.1 4515657 4516523 R PFAM: Aldose 1-epimerase; KEGG: xcb:XC_4244 transglycolase; epimerase; aldose 1-epimerase complement(4515657..4516523) Stenotrophomonas maltophilia R551-3 6474890 YP_002030379.1 CDS Smal_3997 NC_011071.1 4516564 4517832 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: xcc:XCC4157 epimerase; lytic murein transglycosylase complement(4516564..4517832) Stenotrophomonas maltophilia R551-3 6474891 YP_002030380.1 CDS Smal_3998 NC_011071.1 4517917 4518891 R TIGRFAM: methyltransferase; KEGG: xcb:XC_0177 hypothetical protein; methyltransferase complement(4517917..4518891) Stenotrophomonas maltophilia R551-3 6474892 YP_002030381.1 CDS Smal_3999 NC_011071.1 4518888 4520159 R PFAM: protein of unknown function DUF323; KEGG: xcv:XCV0169 hypothetical protein; hypothetical protein complement(4518888..4520159) Stenotrophomonas maltophilia R551-3 6474893 YP_002030382.1 CDS Smal_4000 NC_011071.1 4520310 4521590 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pmy:Pmen_4080 diguanylate cyclase; diguanylate cyclase 4520310..4521590 Stenotrophomonas maltophilia R551-3 6474894 YP_002030383.1 CDS Smal_4001 NC_011071.1 4521594 4522010 R KEGG: xcb:XC_4246 hypothetical protein; hypothetical protein complement(4521594..4522010) Stenotrophomonas maltophilia R551-3 6474895 YP_002030384.1 CDS Smal_4002 NC_011071.1 4522090 4522869 D PFAM: protein of unknown function DUF81; KEGG: xcb:XC_4248 hypothetical protein; hypothetical protein 4522090..4522869 Stenotrophomonas maltophilia R551-3 6474896 YP_002030385.1 CDS Smal_4003 NC_011071.1 4522966 4526346 R KEGG: xom:XOO_4331 hypothetical protein; hypothetical protein complement(4522966..4526346) Stenotrophomonas maltophilia R551-3 6474897 YP_002030386.1 CDS Smal_4004 NC_011071.1 4526363 4527064 R KEGG: xom:XOO_4332 hypothetical protein; hypothetical protein complement(4526363..4527064) Stenotrophomonas maltophilia R551-3 6474898 YP_002030387.1 CDS Smal_4005 NC_011071.1 4527051 4528520 R KEGG: xoo:XOO4597 hypothetical protein; hypothetical protein complement(4527051..4528520) Stenotrophomonas maltophilia R551-3 6474899 YP_002030388.1 CDS folE NC_011071.1 4528633 4529244 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(4528633..4529244) Stenotrophomonas maltophilia R551-3 6474900 YP_002030389.1 CDS Smal_4007 NC_011071.1 4529849 4530304 D PFAM: regulatory protein MarR; KEGG: xcb:XC_4254 transcriptional regulator for cryptic hemolysin; MarR family transcriptional regulator 4529849..4530304 Stenotrophomonas maltophilia R551-3 6474901 YP_002030390.1 CDS Smal_4008 NC_011071.1 4530413 4530622 D PFAM: protein of unknown function DUF1656; KEGG: xcb:XC_4255 hypothetical protein; hypothetical protein 4530413..4530622 Stenotrophomonas maltophilia R551-3 6474902 YP_002030391.1 CDS Smal_4009 NC_011071.1 4530619 4531536 D PFAM: secretion protein HlyD family protein; KEGG: xcb:XC_4256 fusaric acid resistance protein; secretion protein HlyD family protein 4530619..4531536 Stenotrophomonas maltophilia R551-3 6474903 YP_002030392.1 CDS Smal_4010 NC_011071.1 4531533 4532993 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: xcb:XC_4257 outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 4531533..4532993 Stenotrophomonas maltophilia R551-3 6474904 YP_002030393.1 CDS Smal_4011 NC_011071.1 4532997 4535036 D PFAM: Fusaric acid resistance protein conserved region; KEGG: xac:XAC4307 hypothetical protein; fusaric acid resistance protein 4532997..4535036 Stenotrophomonas maltophilia R551-3 6474905 YP_002030394.1 CDS Smal_4012 NC_011071.1 4535131 4535529 D KEGG: fnu:FN0983 hypothetical protein; hypothetical protein 4535131..4535529 Stenotrophomonas maltophilia R551-3 6474906 YP_002030395.1 CDS Smal_4013 NC_011071.1 4535576 4537456 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: xac:XAC4335 exodeoxyribonuclease V alpha chain; exodeoxyribonuclease V subunit alpha complement(4535576..4537456) Stenotrophomonas maltophilia R551-3 6474907 YP_002030396.1 CDS Smal_4014 NC_011071.1 4537453 4541133 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: xcv:XCV4442 exodeoxyribonuclease V beta chain; exodeoxyribonuclease V subunit beta complement(4537453..4541133) Stenotrophomonas maltophilia R551-3 6474908 YP_002030397.1 CDS Smal_4015 NC_011071.1 4541130 4544474 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: xcb:XC_4289 exodeoxyribonuclease V gamma chain; exodeoxyribonuclease V subunit gamma complement(4541130..4544474) Stenotrophomonas maltophilia R551-3 6474909 YP_002030398.1 CDS Smal_4016 NC_011071.1 4544659 4545456 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xcv:XCV4450 ABC transporter ATP-binding protein; ABC transporter-like protein 4544659..4545456 Stenotrophomonas maltophilia R551-3 6474910 YP_002030399.1 CDS Smal_4017 NC_011071.1 4545456 4546205 D PFAM: protein of unknown function DUF140; KEGG: xac:XAC4340 toluene tolerance protein; hypothetical protein 4545456..4546205 Stenotrophomonas maltophilia R551-3 6474911 YP_002030400.1 CDS Smal_4018 NC_011071.1 4546264 4546788 D PFAM: Mammalian cell entry related domain protein; KEGG: xcb:XC_4298 toluene tolerance protein; mammalian cell entry domain-containing protein 4546264..4546788 Stenotrophomonas maltophilia R551-3 6474912 YP_002030401.1 CDS Smal_4019 NC_011071.1 4546785 4547447 D PFAM: toluene tolerance family protein; KEGG: xom:XOO_0278 toluene tolerance protein; toluene tolerance family protein 4546785..4547447 Stenotrophomonas maltophilia R551-3 6474913 YP_002030402.1 CDS Smal_4020 NC_011071.1 4547437 4547748 D KEGG: xcb:XC_4300 hypothetical protein; hypothetical protein 4547437..4547748 Stenotrophomonas maltophilia R551-3 6474914 YP_002030403.1 CDS Smal_4021 NC_011071.1 4547750 4548760 D PFAM: VacJ family lipoprotein; KEGG: xcv:XCV4455 putative outer membrane lipoprotein; VacJ family lipoprotein 4547750..4548760 Stenotrophomonas maltophilia R551-3 6474915 YP_002030404.1 CDS Smal_4022 NC_011071.1 4548868 4549413 R PFAM: glutathione peroxidase; KEGG: xac:XAC4346 glutathione peroxidase; glutathione peroxidase complement(4548868..4549413) Stenotrophomonas maltophilia R551-3 6474916 YP_002030405.1 CDS Smal_4023 NC_011071.1 4549550 4549948 R KEGG: xcv:XCV4458 putative secreted protein; hypothetical protein complement(4549550..4549948) Stenotrophomonas maltophilia R551-3 6474917 YP_002030406.1 CDS Smal_4024 NC_011071.1 4550020 4551576 R PFAM: protein of unknown function DUF195; KEGG: xcb:XC_4304 hypothetical protein; hypothetical protein complement(4550020..4551576) Stenotrophomonas maltophilia R551-3 6474918 YP_002030407.1 CDS Smal_4025 NC_011071.1 4551622 4552227 D PFAM: Glutathione S-transferase domain; KEGG: aha:AHA_2659 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 4551622..4552227 Stenotrophomonas maltophilia R551-3 6474919 YP_002030408.1 CDS Smal_4026 NC_011071.1 4552267 4553274 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xac:XAC4349 alginate lyase; zinc-binding alcohol dehydrogenase family protein complement(4552267..4553274) Stenotrophomonas maltophilia R551-3 6474920 YP_002030409.1 CDS Smal_4027 NC_011071.1 4553372 4554337 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xcb:XC_4306 transcriptional regulator; LysR family transcriptional regulator 4553372..4554337 Stenotrophomonas maltophilia R551-3 6474921 YP_002030410.1 CDS Smal_4028 NC_011071.1 4554353 4554982 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: lch:Lcho_4198 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4554353..4554982 Stenotrophomonas maltophilia R551-3 6474922 YP_002030411.1 CDS Smal_4029 NC_011071.1 4554979 4555407 D KEGG: bur:Bcep18194_B0083 hypothetical protein; hypothetical protein 4554979..4555407 Stenotrophomonas maltophilia R551-3 6474923 YP_002030412.1 CDS Smal_4030 NC_011071.1 4555404 4556102 D KEGG: pfl:PFL_2452 hypothetical protein; hypothetical protein 4555404..4556102 Stenotrophomonas maltophilia R551-3 6474924 YP_002030413.1 CDS Smal_4031 NC_011071.1 4556280 4557707 D PFAM: amino acid permease-associated region; KEGG: xcv:XCV4466 amino acid-polyamine-organocation superfamily protein; amino acid permease-associated protein 4556280..4557707 Stenotrophomonas maltophilia R551-3 6474925 YP_002030414.1 CDS Smal_4032 NC_011071.1 4557800 4559041 R PFAM: peptidase M19 renal dipeptidase; KEGG: xac:XAC4362 dipeptidase; membrane dipeptidase complement(4557800..4559041) Stenotrophomonas maltophilia R551-3 6474926 YP_002030415.1 CDS Smal_4033 NC_011071.1 4559196 4560005 D KEGG: aci:ACIAD2254 putative tellurium resistant protein (KlaA/KilA); hypothetical protein 4559196..4560005 Stenotrophomonas maltophilia R551-3 6474927 YP_002030416.1 CDS Smal_4034 NC_011071.1 4560002 4560880 D hypothetical protein 4560002..4560880 Stenotrophomonas maltophilia R551-3 6474928 YP_002030417.1 CDS Smal_4035 NC_011071.1 4560921 4562090 R SMART: PUA domain containing protein; KEGG: xcb:XC_4320 oxidoreductase; PUA domain-containing protein complement(4560921..4562090) Stenotrophomonas maltophilia R551-3 6474929 YP_002030418.1 CDS Smal_4036 NC_011071.1 4562440 4563402 D PFAM: Integral membrane protein TerC; KEGG: xfn:XfasM23_1762 integral membrane protein TerC; integral membrane protein TerC 4562440..4563402 Stenotrophomonas maltophilia R551-3 6474930 YP_002030419.1 CDS Smal_4037 NC_011071.1 4563497 4564267 D PFAM: Rhomboid family protein; KEGG: xcv:XCV4478 hypothetical protein; rhomboid family protein 4563497..4564267 Stenotrophomonas maltophilia R551-3 6474931 YP_002030420.1 CDS Smal_4038 NC_011071.1 4564354 4565469 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: xcc:XCC4234 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(4564354..4565469) Stenotrophomonas maltophilia R551-3 6474932 YP_002030421.1 CDS Smal_4039 NC_011071.1 4565670 4566758 D KEGG: reh:H16_A0011 hypothetical protein; hypothetical protein 4565670..4566758 Stenotrophomonas maltophilia R551-3 6474933 YP_002030422.1 CDS Smal_4040 NC_011071.1 4566706 4567293 R KEGG: reh:H16_A0010 putative phage-related protein; putative phage-like protein complement(4566706..4567293) Stenotrophomonas maltophilia R551-3 6474934 YP_002030423.1 CDS trmE NC_011071.1 4567399 4568748 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4567399..4568748) Stenotrophomonas maltophilia R551-3 6474935 YP_002030424.1 CDS Smal_4042 NC_011071.1 4568752 4571424 R PFAM: TPR repeat-containing protein; polysaccharide deacetylase; peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: xcb:XC_4329 polysaccharide deacetylase; polysaccharide deacetylase complement(4568752..4571424) Stenotrophomonas maltophilia R551-3 6474936 YP_002030425.1 CDS Smal_4043 NC_011071.1 4571574 4573289 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(4571574..4573289) Stenotrophomonas maltophilia R551-3 6474937 YP_002030426.1 CDS Smal_4044 NC_011071.1 4573289 4573747 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: xoo:XOO4637 ribonuclease P; ribonuclease P protein component complement(4573289..4573747) Stenotrophomonas maltophilia R551-3 6474938 YP_002030427.1 CDS rpmH NC_011071.1 4573789 4573929 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4573789..4573929) Stenotrophomonas maltophilia R551-3 6474939 Smal_R0001 tRNA Smal_R0001 NC_011071.1 284181 284256 D tRNA-Thr 284181..284256 Stenotrophomonas maltophilia R551-3 6477938 Smal_R0003 tRNA Smal_R0003 NC_011071.1 354666 354741 D tRNA-Ala 354666..354741 Stenotrophomonas maltophilia R551-3 6478087 Smal_R0004 tRNA Smal_R0004 NC_011071.1 354772 354848 D tRNA-Ile 354772..354848 Stenotrophomonas maltophilia R551-3 6478088 Smal_R0008 tRNA Smal_R0008 NC_011071.1 360336 360411 D tRNA-Ala 360336..360411 Stenotrophomonas maltophilia R551-3 6478092 Smal_R0009 tRNA Smal_R0009 NC_011071.1 360442 360518 D tRNA-Ile 360442..360518 Stenotrophomonas maltophilia R551-3 6478093 Smal_R0014 tRNA Smal_R0014 NC_011071.1 843935 844011 D tRNA-Gln 843935..844011 Stenotrophomonas maltophilia R551-3 6477754 Smal_R0015 tRNA Smal_R0015 NC_011071.1 866880 866965 D tRNA-Tyr 866880..866965 Stenotrophomonas maltophilia R551-3 6477841 Smal_R0016 tRNA Smal_R0016 NC_011071.1 866990 867063 D tRNA-Gly 866990..867063 Stenotrophomonas maltophilia R551-3 6477842 Smal_R0017 tRNA Smal_R0017 NC_011071.1 867113 867188 D tRNA-Thr 867113..867188 Stenotrophomonas maltophilia R551-3 6477843 Smal_R0018 tRNA Smal_R0018 NC_011071.1 868524 868599 D tRNA-Trp 868524..868599 Stenotrophomonas maltophilia R551-3 6477845 Smal_R0019 tRNA Smal_R0019 NC_011071.1 966228 966304 D tRNA-Pro 966228..966304 Stenotrophomonas maltophilia R551-3 6478019 Smal_R0020 tRNA Smal_R0020 NC_011071.1 966343 966419 D tRNA-Arg 966343..966419 Stenotrophomonas maltophilia R551-3 6478020 Smal_R0021 tRNA Smal_R0021 NC_011071.1 966594 966670 D tRNA-His 966594..966670 Stenotrophomonas maltophilia R551-3 6478021 Smal_R0022 tRNA Smal_R0022 NC_011071.1 966750 966825 D tRNA-Lys 966750..966825 Stenotrophomonas maltophilia R551-3 6478022 Smal_R0023 tRNA Smal_R0023 NC_011071.1 967023 967098 D tRNA-Lys 967023..967098 Stenotrophomonas maltophilia R551-3 6478023 Smal_R0024 tRNA Smal_R0024 NC_011071.1 967832 967916 D tRNA-Leu 967832..967916 Stenotrophomonas maltophilia R551-3 6478025 Smal_R0025 tRNA Smal_R0025 NC_011071.1 974615 974689 D tRNA-Val 974615..974689 Stenotrophomonas maltophilia R551-3 6478031 Smal_R0026 tRNA Smal_R0026 NC_011071.1 974716 974792 D tRNA-Asp 974716..974792 Stenotrophomonas maltophilia R551-3 6478032 Smal_R0027 tRNA Smal_R0027 NC_011071.1 974878 974954 D tRNA-Asp 974878..974954 Stenotrophomonas maltophilia R551-3 6478033 Smal_R0028 tRNA Smal_R0028 NC_011071.1 975042 975118 D tRNA-Asp 975042..975118 Stenotrophomonas maltophilia R551-3 6478034 Smal_R0029 tRNA Smal_R0029 NC_011071.1 975225 975301 D tRNA-Asp 975225..975301 Stenotrophomonas maltophilia R551-3 6478035 Smal_R0030 tRNA Smal_R0030 NC_011071.1 982420 982510 D tRNA-Ser 982420..982510 Stenotrophomonas maltophilia R551-3 6478043 Smal_R0032 tRNA Smal_R0032 NC_011071.1 1004436 1004528 R tRNA-Ser complement(1004436..1004528) Stenotrophomonas maltophilia R551-3 6478055 Smal_R0033 tRNA Smal_R0033 NC_011071.1 1026658 1026732 D tRNA-Val 1026658..1026732 Stenotrophomonas maltophilia R551-3 6478152 Smal_R0034 tRNA Smal_R0034 NC_011071.1 1296114 1296189 D tRNA-Thr 1296114..1296189 Stenotrophomonas maltophilia R551-3 6474988 Smal_R0035 tRNA Smal_R0035 NC_011071.1 1471466 1471552 R tRNA-Leu complement(1471466..1471552) Stenotrophomonas maltophilia R551-3 6475143 Smal_R0036 tRNA Smal_R0036 NC_011071.1 1473431 1473517 R tRNA-Leu complement(1473431..1473517) Stenotrophomonas maltophilia R551-3 6475146 Smal_R0037 tRNA Smal_R0037 NC_011071.1 1473723 1473807 R tRNA-Leu complement(1473723..1473807) Stenotrophomonas maltophilia R551-3 6475147 Smal_R0038 tRNA Smal_R0038 NC_011071.1 1575774 1575850 D tRNA-Asn 1575774..1575850 Stenotrophomonas maltophilia R551-3 6475239 Smal_R0039 tRNA Smal_R0039 NC_011071.1 1578699 1578773 D tRNA-Val 1578699..1578773 Stenotrophomonas maltophilia R551-3 6475242 Smal_R0040 tRNA Smal_R0040 NC_011071.1 1578872 1578946 D tRNA-Val 1578872..1578946 Stenotrophomonas maltophilia R551-3 6475243 Smal_R0041 tRNA Smal_R0041 NC_011071.1 1596018 1596093 D tRNA-Gly 1596018..1596093 Stenotrophomonas maltophilia R551-3 6475263 Smal_R0042 tRNA Smal_R0042 NC_011071.1 1597454 1597529 D tRNA-Gly 1597454..1597529 Stenotrophomonas maltophilia R551-3 6475265 Smal_R0043 tRNA Smal_R0043 NC_011071.1 1603358 1603433 D tRNA-Gly 1603358..1603433 Stenotrophomonas maltophilia R551-3 6475273 Smal_R0044 tRNA Smal_R0044 NC_011071.1 1603576 1603651 D tRNA-Gly 1603576..1603651 Stenotrophomonas maltophilia R551-3 6475274 Smal_R0045 tRNA Smal_R0045 NC_011071.1 1603719 1603792 D tRNA-Cys 1603719..1603792 Stenotrophomonas maltophilia R551-3 6475275 Smal_R0046 tRNA Smal_R0046 NC_011071.1 1616054 1616140 R tRNA-Leu complement(1616054..1616140) Stenotrophomonas maltophilia R551-3 6475293 Smal_R0047 tRNA Smal_R0047 NC_011071.1 1663895 1663987 D tRNA-Ser 1663895..1663987 Stenotrophomonas maltophilia R551-3 6475344 Smal_R0048 tRNA Smal_R0048 NC_011071.1 1701488 1701564 R tRNA-Arg complement(1701488..1701564) Stenotrophomonas maltophilia R551-3 6475369 Smal_R0049 tRNA Smal_R0049 NC_011071.1 1701597 1701673 R tRNA-Arg complement(1701597..1701673) Stenotrophomonas maltophilia R551-3 6475370 Smal_R0050 tRNA Smal_R0050 NC_011071.1 1701743 1701819 R tRNA-Arg complement(1701743..1701819) Stenotrophomonas maltophilia R551-3 6475371 Smal_R0051 tRNA Smal_R0051 NC_011071.1 1711674 1711748 R tRNA-Glu complement(1711674..1711748) Stenotrophomonas maltophilia R551-3 6475383 Smal_R0053 tRNA Smal_R0053 NC_011071.1 1941441 1941517 D tRNA-Arg 1941441..1941517 Stenotrophomonas maltophilia R551-3 6475599 Smal_R0054 tRNA Smal_R0054 NC_011071.1 2700642 2700717 D tRNA-Ala 2700642..2700717 Stenotrophomonas maltophilia R551-3 6476883 Smal_R0055 tRNA Smal_R0055 NC_011071.1 2700772 2700847 D tRNA-Glu 2700772..2700847 Stenotrophomonas maltophilia R551-3 6476884 Smal_R0056 tRNA Smal_R0056 NC_011071.1 2701032 2701107 D tRNA-Ala 2701032..2701107 Stenotrophomonas maltophilia R551-3 6476885 Smal_R0057 tRNA Smal_R0057 NC_011071.1 2701157 2701232 D tRNA-Glu 2701157..2701232 Stenotrophomonas maltophilia R551-3 6476886 Smal_R0058 tRNA Smal_R0058 NC_011071.1 2701276 2701351 D tRNA-Ala 2701276..2701351 Stenotrophomonas maltophilia R551-3 6476887 Smal_R0059 tRNA Smal_R0059 NC_011071.1 2701399 2701474 D tRNA-Glu 2701399..2701474 Stenotrophomonas maltophilia R551-3 6476888 Smal_R0060 tRNA Smal_R0060 NC_011071.1 2703589 2703674 D tRNA-Leu 2703589..2703674 Stenotrophomonas maltophilia R551-3 6476892 Smal_R0061 tRNA Smal_R0061 NC_011071.1 2825335 2825424 R tRNA-Ser complement(2825335..2825424) Stenotrophomonas maltophilia R551-3 6477020 Smal_R0062 tRNA Smal_R0062 NC_011071.1 3028221 3028297 D tRNA-Pro 3028221..3028297 Stenotrophomonas maltophilia R551-3 6477205 Smal_R0063 tRNA Smal_R0063 NC_011071.1 3028438 3028514 D tRNA-Pro 3028438..3028514 Stenotrophomonas maltophilia R551-3 6477206 Smal_R0064 tRNA Smal_R0064 NC_011071.1 3090714 3090789 D tRNA-Ala 3090714..3090789 Stenotrophomonas maltophilia R551-3 6477261 Smal_R0065 tRNA Smal_R0065 NC_011071.1 3094853 3094928 D tRNA-Phe 3094853..3094928 Stenotrophomonas maltophilia R551-3 6477267 Smal_R0066 tRNA Smal_R0066 NC_011071.1 3095002 3095077 D tRNA-Phe 3095002..3095077 Stenotrophomonas maltophilia R551-3 6477268 Smal_R0067 tRNA Smal_R0067 NC_011071.1 3110467 3110543 R tRNA-Pro complement(3110467..3110543) Stenotrophomonas maltophilia R551-3 6477293 Smal_R0068 tRNA Smal_R0068 NC_011071.1 3132887 3132963 R tRNA-Met complement(3132887..3132963) Stenotrophomonas maltophilia R551-3 6477314 Smal_R0069 tRNA Smal_R0069 NC_011071.1 3133046 3133122 R tRNA-Met complement(3133046..3133122) Stenotrophomonas maltophilia R551-3 6477315 Smal_R0070 tRNA Smal_R0070 NC_011071.1 3148292 3148376 R tRNA-Leu complement(3148292..3148376) Stenotrophomonas maltophilia R551-3 6477330 Smal_R0071 tRNA Smal_R0071 NC_011071.1 3244660 3244736 R tRNA-Asn complement(3244660..3244736) Stenotrophomonas maltophilia R551-3 6475653 Smal_R0072 tRNA Smal_R0072 NC_011071.1 3483793 3483868 R tRNA-Lys complement(3483793..3483868) Stenotrophomonas maltophilia R551-3 6476013 Smal_R0073 tRNA Smal_R0073 NC_011071.1 3569288 3569361 R tRNA-Gly complement(3569288..3569361) Stenotrophomonas maltophilia R551-3 6476159 Smal_R0074 tRNA Smal_R0074 NC_011071.1 3671394 3671488 D tRNA-Sec 3671394..3671488 Stenotrophomonas maltophilia R551-3 6476321 Smal_R0076 tRNA Smal_R0076 NC_011071.1 4022238 4022313 R tRNA-Met complement(4022238..4022313) Stenotrophomonas maltophilia R551-3 6474450 Smal_R0077 tRNA Smal_R0077 NC_011071.1 4180167 4180243 D tRNA-Met 4180167..4180243 Stenotrophomonas maltophilia R551-3 6474590 Smal_R0078 tRNA Smal_R0078 NC_011071.1 4180302 4180375 D tRNA-Gln 4180302..4180375 Stenotrophomonas maltophilia R551-3 6474591 Smal_R0079 tRNA Smal_R0079 NC_011071.1 4284719 4284795 D tRNA-Arg 4284719..4284795 Stenotrophomonas maltophilia R551-3 6474691 Smal_R0080 tRNA Smal_R0080 NC_011071.1 4381053 4381126 D tRNA-Arg 4381053..4381126 Stenotrophomonas maltophilia R551-3 6474775 Smal_R0083 tRNA Smal_R0083 NC_011071.1 4505507 4505583 R tRNA-Ile complement(4505507..4505583) Stenotrophomonas maltophilia R551-3 6474880 Smal_R0084 tRNA Smal_R0084 NC_011071.1 4505614 4505689 R tRNA-Ala complement(4505614..4505689) Stenotrophomonas maltophilia R551-3 6474881 Smal_R0088 tRNA Smal_R0088 NC_011071.1 4511177 4511253 R tRNA-Ile complement(4511177..4511253) Stenotrophomonas maltophilia R551-3 6474885 Smal_R0089 tRNA Smal_R0089 NC_011071.1 4511284 4511359 R tRNA-Ala complement(4511284..4511359) Stenotrophomonas maltophilia R551-3 6474886 Smal_R0002 rRNA Smal_R0002 NC_011071.1 353034 354573 D 16S ribosomal RNA 353034..354573 Stenotrophomonas maltophilia R551-3 6478086 Smal_R0005 rRNA Smal_R0005 NC_011071.1 355075 357954 D 23S ribosomal RNA 355075..357954 Stenotrophomonas maltophilia R551-3 6478089 Smal_R0006 rRNA Smal_R0006 NC_011071.1 358081 358195 D 5S ribosomal RNA 358081..358195 Stenotrophomonas maltophilia R551-3 6478090 Smal_R0007 rRNA Smal_R0007 NC_011071.1 358704 360243 D 16S ribosomal RNA 358704..360243 Stenotrophomonas maltophilia R551-3 6478091 Smal_R0010 rRNA Smal_R0010 NC_011071.1 360745 363624 D 23S ribosomal RNA 360745..363624 Stenotrophomonas maltophilia R551-3 6478094 Smal_R0011 rRNA Smal_R0011 NC_011071.1 363750 363864 D 5S ribosomal RNA 363750..363864 Stenotrophomonas maltophilia R551-3 6478095 Smal_R0012 rRNA Smal_R0012 NC_011071.1 363997 364111 D 5S ribosomal RNA 363997..364111 Stenotrophomonas maltophilia R551-3 6478096 Smal_R0081 rRNA Smal_R0081 NC_011071.1 4502161 4502275 R 5S ribosomal RNA complement(4502161..4502275) Stenotrophomonas maltophilia R551-3 6474878 Smal_R0082 rRNA Smal_R0082 NC_011071.1 4502401 4505280 R 23S ribosomal RNA complement(4502401..4505280) Stenotrophomonas maltophilia R551-3 6474879 Smal_R0085 rRNA Smal_R0085 NC_011071.1 4505782 4507321 R 16S ribosomal RNA complement(4505782..4507321) Stenotrophomonas maltophilia R551-3 6474882 Smal_R0086 rRNA Smal_R0086 NC_011071.1 4507830 4507944 R 5S ribosomal RNA complement(4507830..4507944) Stenotrophomonas maltophilia R551-3 6474883 Smal_R0087 rRNA Smal_R0087 NC_011071.1 4508071 4510950 R 23S ribosomal RNA complement(4508071..4510950) Stenotrophomonas maltophilia R551-3 6474884 Smal_R0090 rRNA Smal_R0090 NC_011071.1 4511452 4512991 R 16S ribosomal RNA complement(4511452..4512991) Stenotrophomonas maltophilia R551-3 6474887