-- dump date 20240506_001726 -- class Genbank::Contig -- table contig_comment -- id comment NC_013515.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001779.1.REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSMREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, PhrapREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in FranceREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: FranceREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiensREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite feverREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-biteREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite feverREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: HostREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: PathogenREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001779.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013516.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001780.1.REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSMREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, PhrapREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in FranceREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: FranceREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiensREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite feverREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-biteREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite feverREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: HostREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: PathogenREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001780.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083288 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Streptobacillus moniliformis 9901, DSM 12112 Culture Collection ID :: DSM 12112, ATCC 14647 GOLD Stamp ID :: Gi02312 Funding Program :: DOE-GEBA 2007 Number of Reads :: 22979 Sanger, 326576 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11.5x Sanger; 24.9x pyrosequence Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Patient with rat-bite fever in France Isolation Country :: France Host Name :: Homo sapiens Host Health :: Patient with rat-bite fever Oxygen Requirement :: Facultative Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: Endocarditis, Haverhill fever, Rat-bite fever Habitat :: Host Phenotypes :: Pathogen ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 01/16/2024 00:39:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,570 CDSs (total) :: 1,512 Genes (coding) :: 1,490 CDSs (with protein) :: 1,490 Genes (RNA) :: 58 rRNAs :: 6, 5, 5 (5S, 16S, 23S) complete rRNAs :: 6, 5, 5 (5S, 16S, 23S) tRNAs :: 39 ncRNAs :: 3 Pseudo Genes (total) :: 22 CDSs (without protein) :: 22 Pseudo Genes (ambiguous residues) :: 0 of 22 Pseudo Genes (frameshifted) :: 9 of 22 Pseudo Genes (incomplete) :: 13 of 22 Pseudo Genes (internal stop) :: 9 of 22 Pseudo Genes (multiple problems) :: 7 of 22 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.