-- dump date 20140620_081032 -- class Genbank::Gene -- table gene_note -- id note 1012931 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to OMNI:NTL01SPL0534; identified by sequence similarity; deoxyribonuclease-related protein, degenerate 1013100 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; similar to OMNI:SP2000; identified by sequence similarity; DNA-binding response regulator, authentic point mutation 1013236 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; similar to GB:X71808 PID:405804; identified by sequence similarity; transposase, IS256 family, truncation 1013240 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by match to PFAM protein family HMM PF00589; site-specific recombinase, phage integrase family, truncation 1013242 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, degenerate 1013259 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, degenerate 1013321 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to SP:P28367 PID:216335 PID:2331287 GB:AL009126; identified by sequence similarity; peptide chain release factor 2, programmed frameshift 1013384 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, truncation 1013388 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, truncation 1013413 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:2444081; identified by sequence similarity; prophage LambdaSa1, integrase, degenerate 1013415 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to PID:807610; identified by sequence similarity; transposase, degenerate 1013422 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by match to PFAM protein family HMM PF00665; transposase OrfB, IS3 family, truncation 1013441 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to OMNI:NTL01SPL0992; identified by sequence similarity; transcriptional regulator, TetR family, authentic frameshift 1013442 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by match to TIGR protein family HMM TIGR01168; cell wall surface anchor family protein, truncation 1013445 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to OMNI:SP1054; identified by sequence similarity; Tn5252, Orf 10 protein, degenerate 1013447 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to OMNI:SP2188; identified by sequence similarity; chaperonin, 33 kDa, degenerate 1013456 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:11559696; identified by sequence similarity; Tn5252, Orf 28 protein, degenerate 1013457 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, degenerate 1013482 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:5139244; identified by sequence similarity; endopeptidase O, degenerate 1013487 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to OMNI:SP0601; identified by sequence similarity; transmembrane protein Vexp3, degenerate 1013498 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; similar to PID:1354775 GB:AE000520; identified by sequence similarity; regulatory protein, truncation 1013659 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to SP:P39124; identified by sequence similarity; glycogen biosynthesis protein GlgD, authentic frameshift 1013732 This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by Glimmer2; Tn916, hypothetical protein, authentic frameshift 1013741 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to OMNI:SP1715; identified by sequence similarity; ABC transporter ATP-binding protein, authentic frameshift 1013776 This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, authentic frameshift 1013830 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:1399011; identified by sequence similarity; immunogenic secreted protein, degenerate 1013854 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; similar to GP:4098081; identified by sequence similarity; ribonucleotide reductase, truncation 1014024 This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, authentic frameshift 1014028 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; similar to OMNI:NTL01SPL0640; identified by sequence similarity; glycerophosphoryl diester phosphodiesterase 1014038 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to PID:929972 PID:929975; identified by sequence similarity; transposase OrfB, IS3 family, degenerate 1014039 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; similar to GP:2502075; identified by sequence similarity; transposase OrfB, IS3 family, truncation 1014043 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GB:J05229 SP:P15926 PID:552009; identified by sequence similarity; C5a peptidase, authentic frameshift 1014047 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, truncation 1014049 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; similar to GP:2160216; identified by sequence similarity; transposase OrfB, IS3 family, truncation 1014063 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by match to PFAM protein family HMM PF00665; IS861, transposase OrfB, truncation 1014070 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to OMNI:EF0298; identified by sequence similarity; conserved domain protein, authentic frameshift 1014095 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:11559693; identified by sequence similarity; Tn5252, Orf25, degenerate 1014098 This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by match to PFAM protein family HMM PF02534; Tn5252, Orf 21 protein, internal deletion 1014218 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GP:1289510; identified by sequence similarity; rogB protein, authentic frameshift 1014254 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to OMNI:SP1235; identified by sequence similarity; MutT/nudix family protein, authentic frameshift 1014265 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; This gene is interrupted by an IS element, and contains a frameshift.; glycosyl transferase, family 8, degenerate 1014272 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; similar to GP:1289510; identified by sequence similarity; transcriptional regulator, RofA family, authentic point mutation 1014352 This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, authentic frameshift 1014377 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to SP:P52877 PID:1256204; identified by sequence similarity; phosphoserine aminotransferase, authentic frameshift 1014385 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by match to PFAM protein family HMM PF00665; transposase, IS30 family, truncation 1014514 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; similar to OMNI:SP0187; identified by sequence similarity; peptidase, M24 family, authentic point mutation 1014681 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by Glimmer2; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002.; prophage LambdaSa2, bacteriophage replication protein/hypothetical protein, truncation/fusion 1014747 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; similar to GP:12744742; identified by sequence similarity; streptococcal histidine triad family protein, degenerate 1014766 This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; identified by Glimmer2; conserved hypothetical protein, truncation 1014815 similar to GP:6782406; identified by sequence similarity; This gene is interrupted by an IS1381 element; conjugal transfer protein, interruption-N, degenerate 1014905 This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to OMNI:SP1941; identified by sequence similarity; competence/damage-inducible protein CinA, authentic frameshift