-- dump date   	20140620_082004
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002743566.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002743567.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002743568.1	Ortholog of S. equi 4047 (FM204883) SEQ0003
YP_002743569.1	Ortholog of S. equi 4047 (FM204883) SEQ0004
YP_002743570.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002743571.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002743572.1	Ortholog of S. equi 4047 (FM204883) SEQ0007
YP_002743573.1	Ortholog of S. equi 4047 (FM204883) SEQ0008
YP_002743574.1	Ortholog of S. equi 4047 (FM204883) SEQ0009
YP_002743575.1	Ortholog of S. equi 4047 (FM204883) SEQ0010
YP_002743576.1	Ortholog of S. equi 4047 (FM204883) SEQ0011
YP_002743577.1	Ortholog of S. equi 4047 (FM204883) SEQ0012
YP_002743578.1	Ortholog of S. equi 4047 (FM204883) SEQ0013
YP_002743579.1	Ortholog of S. equi 4047 (FM204883) SEQ0014
YP_002743580.1	Ortholog of S. equi 4047 (FM204883) SEQ0015
YP_002743581.1	Ortholog of S. equi 4047 (FM204883) SEQ0016
YP_002743582.1	Ortholog of S. equi 4047 (FM204883) SEQ0017
YP_002743583.1	Ortholog of S. equi 4047 (FM204883) SEQ0018
YP_002743584.1	Ortholog of S. equi 4047 (FM204883) SEQ0019
YP_002743586.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002743587.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_002743588.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002743589.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002743590.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002743591.1	Ortholog of S. equi 4047 (FM204883) SEQ0026
YP_002743592.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002743593.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002743594.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002743595.1	involved in de novo purine biosynthesis
YP_002743596.1	Ortholog of S. equi 4047 (FM204883) SEQ0031
YP_002743597.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002743598.1	Ortholog of S. equi 4047 (FM204883) SEQ0033
YP_002743599.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002743600.1	Ortholog of S. equi 4047 (FM204883) SEQ0035
YP_002743601.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002743602.1	Ortholog of S. equi 4047 (FM204883) SEQ0038
YP_002743603.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002743604.1	Ortholog of S. equi 4047 (FM204883) SEQ0041
YP_002743605.1	Ortholog of S. equi 4047 (FM204883) SEQ0042
YP_002743606.1	Ortholog of S. equi 4047 (FM204883) SEQ0043
YP_002743607.1	Ortholog of S. equi 4047 (FM204883) SEQ0044
YP_002743608.1	Ortholog of S. equi 4047 (FM204883) SEQ0045
YP_002743609.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_002743610.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002743611.1	Ortholog of S. equi 4047 (FM204883) SEQ0053
YP_002743612.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002743613.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002743614.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002743615.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002743616.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002743617.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002743618.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002743619.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002743620.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002743621.1	one of the stabilizing components for the large ribosomal subunit
YP_002743622.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002743623.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002743624.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002743625.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002743626.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002743627.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002743628.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002743629.1	binds 5S rRNA along with protein L5 and L25
YP_002743630.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002743631.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002743632.1	late assembly protein
YP_002743633.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002743634.1	Ortholog of S. equi 4047 (FM204883) SEQ0076
YP_002743635.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002743636.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002743637.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002743638.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002743639.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002743640.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002743641.1	Ortholog of S. equi 4047 (FM204883) SEQ0084; Possible gene remnant. Similar to the N-terminal regions of several proteins. Contains addition internal sequence in comparison to S. equi orthologue
YP_002743642.1	Ortholog of S. equi 4047 (FM204883) SEQ0085
YP_002743643.1	Ortholog of S. equi 4047 (FM204883) SEQ0087
YP_002743644.1	Ortholog of S. equi 4047 (FM204883) SEQ0089
YP_002743647.1	Ortholog of S. equi 4047 (FM204883) SEQ0091
YP_002743648.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002743649.1	Ortholog of S. equi 4047 (FM204883) SEQ0093
YP_002743650.1	Ortholog of S. equi 4047 (FM204883) SEQ0094
YP_002743651.1	Ortholog of S. equi 4047 (FM204883) SEQ0095
YP_002743652.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002743653.1	Ortholog of S. equi 4047 (FM204883) SEQ0097
YP_002743655.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002743656.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002743657.1	Ortholog of S. equi 4047 (FM204883) SEQ0103
YP_002743658.1	Ortholog of S. equi 4047 (FM204883) SEQ0104
YP_002743659.1	Ortholog of S. equi 4047 (FM204883) SEQ0105
YP_002743660.1	Ortholog of S. equi 4047 (FM204883) SEQ0106
YP_002743661.1	Ortholog of S. equi 4047 (FM204883) SEQ0107
YP_002743662.1	Ortholog of S. equi 4047 (FM204883) SEQ0108
YP_002743663.1	Ortholog of S. equi 4047 (FM204883) SEQ0109
YP_002743664.1	Ortholog of S. equi 4047 (FM204883) SEQ0110
YP_002743665.1	Ortholog of S. equi 4047 (FM204883) SEQ0111
YP_002743666.1	Ortholog of S. equi 4047 (FM204883) SEQ0112
YP_002743667.1	Ortholog of S. equi 4047 (FM204883) SEQ0113
YP_002743668.1	Ortholog of S. equi 4047 (FM204883) SEQ0117
YP_002743669.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002743670.1	Ortholog of S. equi 4047 (FM204883) SEQ0121
YP_002743671.1	Ortholog of S. equi 4047 (FM204883) SEQ0122
YP_002743672.1	Ortholog of S. equi 4047 (FM204883) SEQ0123
YP_002743673.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_002743674.1	Ortholog of S. equi 4047 (FM204883) SEQ0125
YP_002743675.1	Ortholog of S. equi 4047 (FM204883) SEQ0126
YP_002743676.1	Ortholog of S. equi 4047 (FM204883) SEQ0128
YP_002743677.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002743678.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002743679.1	Ortholog of S. equi 4047 (FM204883) SEQ0131
YP_002743680.1	Ortholog of S. equi 4047 (FM204883) SEQ0132
YP_002743681.1	Ortholog of S. equi 4047 (FM204883) SEQ0199
YP_002743682.1	Ortholog of S. equi 4047 (FM204883) SEQ0200
YP_002743683.1	Ortholog of S. equi 4047 (FM204883) SEQ0201
YP_002743686.1	Ortholog of S. equi 4047 (FM204883) SEQ1564
YP_002743687.1	Ortholog of S. equi 4047 (FM204883) SEQ0205
YP_002743688.1	Ortholog of S. equi 4047 (FM204883) SEQ0206
YP_002743689.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002743690.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002743692.1	Ortholog of S. equi 4047 (FM204883) SEQ0686
YP_002743694.1	Ortholog of S. equi 4047 (FM204883) SEQ0222
YP_002743695.1	Ortholog of S. equi 4047 (FM204883) SEQ0223
YP_002743696.1	Ortholog of S. equi 4047 (FM204883) SEQ0224
YP_002743697.1	Ortholog of S. equi 4047 (FM204883) SEQ0225
YP_002743698.1	Ortholog of S. equi 4047 (FM204883) SEQ0226
YP_002743699.1	Ortholog of S. equi 4047 (FM204883) SEQ0227
YP_002743700.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_002743701.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002743702.1	Modulates Rho-dependent transcription termination
YP_002743703.1	Ortholog of S. equi 4047 (FM204883) SEQ0231
YP_002743705.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002743707.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_002743708.1	Ortholog of S. equi 4047 (FM204883) SEQ0242
YP_002743709.1	Ortholog of S. equi 4047 (FM204883) SEQ0243
YP_002743710.1	catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization
YP_002743711.1	L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate
YP_002743712.1	catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways
YP_002743713.1	Ortholog of S. equi 4047 (FM204883) SEQ0247
YP_002743714.1	Ortholog of S. equi 4047 (FM204883) SEQ0248
YP_002743715.1	Ortholog of S. equi 4047 (FM204883) SEQ0249
YP_002743716.1	Ortholog of S. equi 4047 (FM204883) SEQ0250
YP_002743717.1	Ortholog of S. equi 4047 (FM204883) SEQ0251
YP_002743718.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_002743719.1	Ortholog of S. equi 4047 (FM204883) SEQ0254
YP_002743720.1	Ortholog of S. equi 4047 (FM204883) SEQ0255
YP_002743721.1	Ortholog of S. equi 4047 (FM204883) SEQ0256
YP_002743722.1	Ortholog of S. equi 4047 (FM204883) SEQ0257
YP_002743723.1	Ortholog of S. equi 4047 (FM204883) SEQ0258
YP_002743724.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002743725.1	Ortholog of S. equi 4047 (FM204883) SEQ0260
YP_002743726.1	Ortholog of S. equi 4047 (FM204883) SEQ0263
YP_002743727.1	Ortholog of S. equi 4047 (FM204883) SEQ0264
YP_002743728.1	Ortholog of S. equi 4047 (FM204883) SEQ0265
YP_002743729.1	Ortholog of S. equi 4047 (FM204883) SEQ0266
YP_002743730.1	Ortholog of S. equi 4047 (FM204883) SEQ0267
YP_002743731.1	Ortholog of S. equi 4047 (FM204883) SEQ0268
YP_002743732.1	Ortholog of S. equi 4047 (FM204883) SEQ0269
YP_002743733.1	Ortholog of S. equi 4047 (FM204883) SEQ0270
YP_002743734.1	Ortholog of S. equi 4047 (FM204883) SEQ0289
YP_002743736.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002743737.1	Converts D-sorbitol-dphosphate to D-fructose-6-phosphate
YP_002743738.1	Ortholog of S. equi 4047 (FM204883) SEQ0286; CDS is truncated at the N-terminus in comparison to orthologues. Possible gene remnant
YP_002743739.1	Ortholog of S. equi 4047 (FM204883) SEQ0285
YP_002743740.1	Ortholog of S. equi 4047 (FM204883) SEQ0284
YP_002743741.1	Ortholog of S. equi 4047 (FM204883) SEQ0283
YP_002743742.1	Ortholog of S. equi 4047 (FM204883) SEQ0282
YP_002743743.1	Ortholog of S. equi 4047 (FM204883) SEQ2026
YP_002743744.1	Ortholog of S. equi 4047 (FM204883) SEQ2025
YP_002743745.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002743746.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002743747.1	Ortholog of S. equi 4047 (FM204883) SEQ2022
YP_002743748.1	Ortholog of S. equi 4047 (FM204883) SEQ2021
YP_002743749.1	Ortholog of S. equi 4047 (FM204883) SEQ2020
YP_002743750.1	has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_002743751.1	Ortholog of S. equi 4047 (FM204883) SEQ2017
YP_002743752.1	Ortholog of S. equi 4047 (FM204883) SEQ2016
YP_002743753.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_002743754.1	Ortholog of S. equi 4047 (FM204883) SEQ2014
YP_002743755.1	Ortholog of S. equi 4047 (FM204883) SEQ2013
YP_002743756.1	Ortholog of S. equi 4047 (FM204883) SEQ2012
YP_002743757.1	Ortholog of S. equi 4047 (FM204883) SEQ2011
YP_002743758.1	Ortholog of S. equi 4047 (FM204883) SEQ2010
YP_002743759.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_002743760.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_002743761.1	Ortholog of S. equi 4047 (FM204883) SEQ2007
YP_002743762.1	Ortholog of S. equi 4047 (FM204883) SEQ2006
YP_002743763.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002743764.1	Ortholog of S. equi 4047 (FM204883) SEQ2004
YP_002743765.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_002743766.1	Ortholog of S. equi 4047 (FM204883) SEQ2002
YP_002743767.1	Ortholog of S. equi 4047 (FM204883) SEQ2001
YP_002743768.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002743769.1	Ortholog of S. equi 4047 (FM204883) SEQ1999
YP_002743770.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002743772.1	Ortholog of S. equi 4047 (FM204883) SEQ0119
YP_002743773.1	Ortholog of S. equi 4047 (FM204883) SEQ1995
YP_002743774.1	Ortholog of S. equi 4047 (FM204883) SEQ1994
YP_002743775.1	Ortholog of S. equi 4047 (FM204883) SEQ1993
YP_002743776.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002743777.1	Ortholog of S. equi 4047 (FM204883) SEQ1991
YP_002743778.1	Ortholog of S. equi 4047 (FM204883) SEQ1990
YP_002743779.1	Ortholog of S. equi 4047 (FM204883) SEQ1989
YP_002743780.1	Ortholog of S. equi 4047 (FM204883) SEQ1988
YP_002743781.1	Ortholog of S. equi 4047 (FM204883) SEQ1987
YP_002743782.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002743783.1	forms a direct contact with the tRNA during translation
YP_002743784.1	Ortholog of S. equi 4047 (FM204883) SEQ1984
YP_002743785.1	Ortholog of S. equi 4047 (FM204883) SEQ1982
YP_002743793.1	Ortholog of S. equi 4047 (FM204883) SEQ1965
YP_002743794.1	Ortholog of S. equi 4047 (FM204883) SEQ1964
YP_002743795.1	catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism
YP_002743796.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_002743797.1	Ortholog of S. equi 4047 (FM204883) SEQ1961
YP_002743798.1	Ortholog of S. equi 4047 (FM204883) SEQ1960
YP_002743799.1	Ortholog of S. equi 4047 (FM204883) SEQ1959
YP_002743800.1	Ortholog of S. equi 4047 (FM204883) SEQ1958
YP_002743801.1	Ortholog of S. equi 4047 (FM204883) SEQ1957
YP_002743803.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_002743804.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002743805.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_002743806.1	Ortholog of S. equi 4047 (FM204883) SEQ1952
YP_002743807.1	Ortholog of S. equi 4047 (FM204883) SEQ1951
YP_002743808.1	Ortholog of S. equi 4047 (FM204883) SEQ1950
YP_002743809.1	Ortholog of S. equi 4047 (FM204883) SEQ1949
YP_002743810.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002743811.1	participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
YP_002743812.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002743813.1	Ortholog of S. equi 4047 (FM204883) SEQ1944
YP_002743814.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002743815.1	Ortholog of S. equi 4047 (FM204883) SEQ1941
YP_002743817.1	required for 70S ribosome assembly
YP_002743818.1	Ortholog of S. equi 4047 (FM204883) SEQ1939
YP_002743819.1	Ortholog of S. equi 4047 (FM204883) SEQ1938
YP_002743820.1	Ortholog of S. equi 4047 (FM204883) SEQ1937
YP_002743821.1	Ortholog of S. equi 4047 (FM204883) SEQ1936
YP_002743822.1	Ortholog of S. equi 4047 (FM204883) SEQ1935
YP_002743823.1	Ortholog of S. equi 4047 (FM204883) SEQ1934
YP_002743824.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002743825.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_002743826.1	Ortholog of S. equi 4047 (FM204883) SEQ1931
YP_002743827.1	Ortholog of S. equi 4047 (FM204883) SEQ1930
YP_002743828.1	Ortholog of S. equi 4047 (FM204883) SEQ1929
YP_002743829.1	Ortholog of S. equi 4047 (FM204883) SEQ1928
YP_002743830.1	Ortholog of S. equi 4047 (FM204883) SEQ1927
YP_002743831.1	Ortholog of S. equi 4047 (FM204883) SEQ1926
YP_002743832.1	Ortholog of S. equi 4047 (FM204883) SEQ1922
YP_002743833.1	Ortholog of S. equi 4047 (FM204883) SEQ1921
YP_002743834.1	Ortholog of S. equi 4047 (FM204883) SEQ1920
YP_002743835.1	Ortholog of S. equi 4047 (FM204883) SEQ1919
YP_002743836.1	Ortholog of S. equi 4047 (FM204883) SEQ1918
YP_002743837.1	Ortholog of S. equi 4047 (FM204883) SEQ1917
YP_002743838.1	Ortholog of S. equi 4047 (FM204883) SEQ1916
YP_002743839.1	Ortholog of S. equi 4047 (FM204883) SEQ1915
YP_002743842.1	Ortholog of S. equi 4047 (FM204883) SEQ1913
YP_002743843.1	in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
YP_002743844.1	Ortholog of S. equi 4047 (FM204883) SEQ1911
YP_002743845.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_002743846.1	Ortholog of S. equi 4047 (FM204883) SEQ1909
YP_002743847.1	Ortholog of S. equi 4047 (FM204883) SEQ1908
YP_002743848.1	Ortholog of S. equi 4047 (FM204883) SEQ1907
YP_002743849.1	Ortholog of S. equi 4047 (FM204883) SEQ1906
YP_002743850.1	Ortholog of S. equi 4047 (FM204883) SEQ1905
YP_002743851.1	Ortholog of S. equi 4047 (FM204883) SEQ1904
YP_002743852.1	Ortholog of S. equi 4047 (FM204883) SEQ1903
YP_002743853.1	Ortholog of S. equi 4047 (FM204883) SEQ1902
YP_002743854.1	Ortholog of S. equi 4047 (FM204883) SEQ1901
YP_002743855.1	Ortholog of S. equi 4047 (FM204883) SEQ1900
YP_002743856.1	Ortholog of S. equi 4047 (FM204883) SEQ1899
YP_002743857.1	Ortholog of S. equi 4047 (FM204883) SEQ1898
YP_002743858.1	involved in the import of serine and threonine coupled with the import of sodium
YP_002743859.1	Ortholog of S. equi 4047 (FM204883) SEQ1896
YP_002743860.1	Ortholog of S. equi 4047 (FM204883) SEQ1895
YP_002743861.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002743862.1	Ortholog of S. equi 4047 (FM204883) SEQ1893
YP_002743863.1	metalloprotease
YP_002743864.1	Ortholog of S. equi 4047 (FM204883) SEQ1891
YP_002743865.1	Ortholog of S. equi 4047 (FM204883) SEQ1890
YP_002743866.1	Ortholog of S. equi 4047 (FM204883) SEQ1889
YP_002743867.1	Ortholog of S. equi 4047 (FM204883) SEQ1888
YP_002743868.1	Ortholog of S. equi 4047 (FM204883) SEQ1887
YP_002743869.1	Primosomal protein that may act to load helicase DnaC during DNA replication
YP_002743870.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002743871.1	Ortholog of S. equi 4047 (FM204883) SEQ1884
YP_002743872.1	Ortholog of S. equi 4047 (FM204883) SEQ1883
YP_002743873.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002743874.1	Ortholog of S. equi 4047 (FM204883) SEQ1881
YP_002743875.1	Ortholog of S. equi 4047 (FM204883) SEQ1880
YP_002743876.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002743877.1	involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site
YP_002743878.1	catalyzes the hydrolysis of acylphosphate
YP_002743879.1	Ortholog of S. equi 4047 (FM204883) SEQ1872
YP_002743880.1	Ortholog of S. equi 4047 (FM204883) SEQ1871
YP_002743881.1	Ortholog of S. equi 4047 (FM204883) SEQ1870
YP_002743882.1	Ortholog of S. equi 4047 (FM204883) SEQ1869
YP_002743883.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002743884.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002743885.1	Ortholog of S. equi 4047 (FM204883) SEQ1866
YP_002743886.1	Ortholog of S. equi 4047 (FM204883) SEQ1865
YP_002743887.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002743888.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_002743889.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_002743890.1	Ortholog of S. equi 4047 (FM204883) SEQ1861
YP_002743891.1	Ortholog of S. equi 4047 (FM204883) SEQ1860
YP_002743892.1	Ortholog of S. equi 4047 (FM204883) SEQ1859
YP_002743896.1	Ortholog of S. equi 4047 (FM204883) SEQ1855
YP_002743899.1	Ortholog of S. equi 4047 (FM204883) SEQ1850
YP_002743900.1	Ortholog of S. equi 4047 (FM204883) SEQ1849
YP_002743901.1	Ortholog of S. equi 4047 (FM204883) SEQ1848
YP_002743902.1	Ortholog of S. equi 4047 (FM204883) SEQ1847
YP_002743903.1	Ortholog of S. equi 4047 (FM204883) SEQ1846
YP_002743904.1	Ortholog of S. equi 4047 (FM204883) SEQ1845
YP_002743905.1	Ortholog of S. equi 4047 (FM204883) SEQ1844
YP_002743906.1	Ortholog of S. equi 4047 (FM204883) SEQ1843
YP_002743907.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002743908.1	Ortholog of S. equi 4047 (FM204883) SEQ1840
YP_002743909.1	Ortholog of S. equi 4047 (FM204883) SEQ1839
YP_002743910.1	Ortholog of S. equi 4047 (FM204883) SEQ1838
YP_002743911.1	Ortholog of S. equi 4047 (FM204883) SEQ1837
YP_002743912.1	Ortholog of S. equi 4047 (FM204883) SEQ1836
YP_002743913.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine
YP_002743914.1	Ortholog of S. equi 4047 (FM204883) SEQ1834
YP_002743915.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002743916.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002743917.1	Ortholog of S. equi 4047 (FM204883) SEQ1831
YP_002743918.1	Ortholog of S. equi 4047 (FM204883) SEQ1830
YP_002743919.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002743920.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.
YP_002743921.1	Ortholog of S. equi 4047 (FM204883) SEQ1827
YP_002743922.1	in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA
YP_002743923.1	Ortholog of S. equi 4047 (FM204883) SEQ1825
YP_002743925.1	Ortholog of S. equi 4047 (FM204883) SEQ1823
YP_002743926.1	Ortholog of S. equi 4047 (FM204883) SEQ1822
YP_002743927.1	Ortholog of S. equi 4047 (FM204883) SEQ1821
YP_002743928.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_002743929.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002743930.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002743931.1	Ortholog of S. equi 4047 (FM204883) SEQ1817
YP_002743932.1	Ortholog of S. equi 4047 (FM204883) SEQ1816
YP_002743933.1	Ortholog of S. equi 4047 (FM204883) SEQ1815
YP_002743934.1	Ortholog of S. equi 4047 (FM204883) SEQ1814
YP_002743935.1	Ortholog of S. equi 4047 (FM204883) SEQ1810
YP_002743936.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002743937.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002743938.1	Ortholog of S. equi 4047 (FM204883) SEQ1806
YP_002743939.1	Ortholog of S. equi 4047 (FM204883) SEQ1805
YP_002743940.1	Ortholog of S. equi 4047 (FM204883) SEQ1804
YP_002743941.1	Ortholog of S. equi 4047 (FM204883) SEQ1803
YP_002743942.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002743943.1	Ortholog of S. equi 4047 (FM204883) SEQ1801
YP_002743944.1	Ortholog of S. equi 4047 (FM204883) SEQ1800
YP_002743945.1	Ortholog of S. equi 4047 (FM204883) SEQ1799
YP_002743946.1	Ortholog of S. equi 4047 (FM204883) SEQ1798
YP_002743947.1	Ortholog of S. equi 4047 (FM204883) SEQ1797
YP_002743948.1	Ortholog of S. equi 4047 (FM204883) SEQ1796
YP_002743949.1	Ortholog of S. equi 4047 (FM204883) SEQ1795
YP_002743950.1	Ortholog of S. equi 4047 (FM204883) SEQ1794
YP_002743951.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002743952.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002743953.1	Ortholog of S. equi 4047 (FM204883) SEQ1791
YP_002743954.1	Ortholog of S. equi 4047 (FM204883) SEQ1790
YP_002743955.1	functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC
YP_002743956.1	Ortholog of S. equi 4047 (FM204883) SEQ1788
YP_002743957.1	Ortholog of S. equi 4047 (FM204883) SEQ1787
YP_002743958.1	Ortholog of S. equi 4047 (FM204883) SEQ1786
YP_002743959.1	Ortholog of S. equi 4047 (FM204883) SEQ1785
YP_002743960.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_002743961.1	Ortholog of S. equi 4047 (FM204883) SEQ1781
YP_002743962.1	Essential for recycling GMP and indirectly, cGMP
YP_002743963.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002743964.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_002743965.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_002743966.1	Ortholog of S. equi 4047 (FM204883) SEQ1776
YP_002743967.1	Ortholog of S. equi 4047 (FM204883) SEQ1775
YP_002743968.1	Ortholog of S. equi 4047 (FM204883) SEQ1774
YP_002743969.1	Ortholog of S. equi 4047 (FM204883) SEQ1773
YP_002743970.1	Ortholog of S. equi 4047 (FM204883) SEQ1772
YP_002743971.1	Ortholog of S. equi 4047 (FM204883) SEQ1771
YP_002743972.1	Ortholog of S. equi 4047 (FM204883) SEQ1770
YP_002743973.1	Ortholog of S. equi 4047 (FM204883) SEQ1769
YP_002743974.1	Ortholog of S. equi 4047 (FM204883) SEQ1768
YP_002743975.1	Ortholog of S. equi 4047 (FM204883) SEQ1767
YP_002743976.1	Ortholog of S. equi 4047 (FM204883) SEQ1725
YP_002743977.1	Ortholog of S. equi 4047 (FM204883) SEQ1724
YP_002743978.1	Ortholog of S. equi 4047 (FM204883) SEQ1723
YP_002743979.1	Ortholog of S. equi 4047 (FM204883) SEQ1719
YP_002743980.1	Ortholog of S. equi 4047 (FM204883) SEQ1718
YP_002743981.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_002743987.1	Ortholog of S. equi 4047 (FM204883) SEQ1716
YP_002743988.1	Ortholog of S. equi 4047 (FM204883) SEQ1715
YP_002743989.1	Ortholog of S. equi 4047 (FM204883) SEQ1714
YP_002743990.1	Ortholog of S. equi 4047 (FM204883) SEQ1713; CDS contains a double glycine clevage motif
YP_002743991.1	Ortholog of S. equi 4047 (FM204883) SEQ1712
YP_002743992.1	Ortholog of S. equi 4047 (FM204883) SEQ1711
YP_002743993.1	CDS contains a double glycine clevage motif
YP_002743994.1	Ortholog of S. equi 4047 (FM204883) SEQ1710
YP_002743995.1	Ortholog of S. equi 4047 (FM204883) SEQ1709
YP_002743996.1	Ortholog of S. equi 4047 (FM204883) SEQ1708
YP_002743997.1	Ortholog of S. equi 4047 (FM204883) SEQ1707
YP_002743998.1	Ortholog of S. equi 4047 (FM204883) SEQ1706
YP_002743999.1	Ortholog of S. equi 4047 (FM204883) SEQ1705
YP_002744000.1	Ortholog of S. equi 4047 (FM204883) SEQ1704
YP_002744001.1	Ortholog of S. equi 4047 (FM204883) SEQ1701
YP_002744002.1	Ortholog of S. equi 4047 (FM204883) SEQ1700
YP_002744003.1	Ortholog of S. equi 4047 (FM204883) SEQ1698
YP_002744004.1	Ortholog of S. equi 4047 (FM204883) SEQ1697
YP_002744005.1	Ortholog of S. equi 4047 (FM204883) SEQ1696
YP_002744006.1	Ortholog of S. equi 4047 (FM204883) SEQ1695
YP_002744007.1	Ortholog of S. equi 4047 (FM204883) SEQ1694
YP_002744008.1	Ortholog of S. equi 4047 (FM204883) SEQ1693
YP_002744009.1	Ortholog of S. equi 4047 (FM204883) SEQ1692
YP_002744010.1	Ortholog of S. equi 4047 (FM204883) SEQ1690
YP_002744011.1	Ortholog of S. equi 4047 (FM204883) SEQ1689
YP_002744012.1	Ortholog of S. equi 4047 (FM204883) SEQ1688
YP_002744013.1	Ortholog of S. equi 4047 (FM204883) SEQ1687
YP_002744014.1	Ortholog of S. equi 4047 (FM204883) SEQ1686
YP_002744015.1	Ortholog of S. equi 4047 (FM204883) SEQ1685
YP_002744016.1	Ortholog of S. equi 4047 (FM204883) SEQ1684
YP_002744017.1	Ortholog of S. equi 4047 (FM204883) SEQ1683
YP_002744018.1	Ortholog of S. equi 4047 (FM204883) SEQ1682
YP_002744019.1	Ortholog of S. equi 4047 (FM204883) SEQ1681
YP_002744020.1	Ortholog of S. equi 4047 (FM204883) SEQ1680
YP_002744021.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002744022.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_002744023.1	Ortholog of S. equi 4047 (FM204883) SEQ1676
YP_002744024.1	Ortholog of S. equi 4047 (FM204883) SEQ1675
YP_002744025.1	Ortholog of S. equi 4047 (FM204883) SEQ1674
YP_002744026.1	Ortholog of S. equi 4047 (FM204883) SEQ1673
YP_002744027.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002744028.1	Ortholog of S. equi 4047 (FM204883) SEQ1671
YP_002744029.1	Ortholog of S. equi 4047 (FM204883) SEQ1670
YP_002744030.1	Ortholog of S. equi 4047 (FM204883) SEQ1669
YP_002744031.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002744032.1	Ortholog of S. equi 4047 (FM204883) SEQ1667
YP_002744033.1	Ortholog of S. equi 4047 (FM204883) SEQ1666
YP_002744034.1	Ortholog of S. equi 4047 (FM204883) SEQ1665
YP_002744035.1	Ortholog of S. equi 4047 (FM204883) SEQ1664
YP_002744036.1	Ortholog of S. equi 4047 (FM204883) SEQ1663
YP_002744037.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002744038.1	Ortholog of S. equi 4047 (FM204883) SEQ1661
YP_002744039.1	Ortholog of S. equi 4047 (FM204883) SEQ1660
YP_002744040.1	Ortholog of S. equi 4047 (FM204883) SEQ1659
YP_002744041.1	Ortholog of S. equi 4047 (FM204883) SEQ1658
YP_002744042.1	Ortholog of S. equi 4047 (FM204883) SEQ1657
YP_002744043.1	Ortholog of S. equi 4047 (FM204883) SEQ1655
YP_002744044.1	Ortholog of S. equi 4047 (FM204883) SEQ1653
YP_002744045.1	Ortholog of S. equi 4047 (FM204883) SEQ1652
YP_002744046.1	binds directly to 23S ribosomal RNA
YP_002744047.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002744048.1	Ortholog of S. equi 4047 (FM204883) SEQ1649
YP_002744049.1	Ortholog of S. equi 4047 (FM204883) SEQ1648
YP_002744050.1	Ortholog of S. equi 4047 (FM204883) SEQ1647
YP_002744051.1	Ortholog of S. equi 4047 (FM204883) SEQ1646
YP_002744052.1	Ortholog of S. equi 4047 (FM204883) SEQ1645
YP_002744053.1	Ortholog of S. equi 4047 (FM204883) SEQ1644
YP_002744054.1	Catalyzes the phosphorylation of UMP to UDP
YP_002744055.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002744056.1	Ortholog of S. equi 4047 (FM204883) SEQ1641
YP_002744057.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_002744058.1	Ortholog of S. equi 4047 (FM204883) SEQ1639
YP_002744059.1	Ortholog of S. equi 4047 (FM204883) SEQ1638
YP_002744060.1	Ortholog of S. equi 4047 (FM204883) SEQ1637
YP_002744061.1	Ortholog of S. equi 4047 (FM204883) SEQ1636
YP_002744062.1	Ortholog of S. equi 4047 (FM204883) SEQ1635
YP_002744063.1	Ortholog of S. equi 4047 (FM204883) SEQ1634
YP_002744064.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002744071.1	Ortholog of S. equi 4047 (FM204883) SEQ1631
YP_002744072.1	Ortholog of S. equi 4047 (FM204883) SEQ1630
YP_002744073.1	Ortholog of S. equi 4047 (FM204883) SEQ1629
YP_002744074.1	Ortholog of S. equi 4047 (FM204883) SEQ1628
YP_002744075.1	Ortholog of S. equi 4047 (FM204883) SEQ1627
YP_002744076.1	Ortholog of S. equi 4047 (FM204883) SEQ1626
YP_002744077.1	Ortholog of S. equi 4047 (FM204883) SEQ1625
YP_002744078.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_002744079.1	Ortholog of S. equi 4047 (FM204883) SEQ1623
YP_002744080.1	Ortholog of S. equi 4047 (FM204883) SEQ1620
YP_002744081.1	Ortholog of S. equi 4047 (FM204883) SEQ1619
YP_002744082.1	Ortholog of S. equi 4047 (FM204883) SEQ1618
YP_002744083.1	Ortholog of S. equi 4047 (FM204883) SEQ1617
YP_002744084.1	Ortholog of S. equi 4047 (FM204883) SEQ1616
YP_002744085.1	Ortholog of S. equi 4047 (FM204883) SEQ1615
YP_002744086.1	Ortholog of S. equi 4047 (FM204883) SEQ1613
YP_002744087.1	Ortholog of S. equi 4047 (FM204883) SEQ1612
YP_002744088.1	Ortholog of S. equi 4047 (FM204883) SEQ1611
YP_002744089.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002744090.1	Ortholog of S. equi 4047 (FM204883) SEQ1609
YP_002744091.1	Ortholog of S. equi 4047 (FM204883) SEQ0555
YP_002744095.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002744096.1	Ortholog of S. equi 4047 (FM204883) SEQ1604
YP_002744097.1	Ortholog of S. equi 4047 (FM204883) SEQ1603
YP_002744098.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002744099.1	Ortholog of S. equi 4047 (FM204883) SEQ1601
YP_002744100.1	Ortholog of S. equi 4047 (FM204883) SEQ1600
YP_002744101.1	Ortholog of S. equi 4047 (FM204883) SEQ1599
YP_002744102.1	Ortholog of S. equi 4047 (FM204883) SEQ1597
YP_002744103.1	Ortholog of S. equi 4047 (FM204883) SEQ1596
YP_002744104.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_002744105.1	Ortholog of S. equi 4047 (FM204883) SEQ1594
YP_002744106.1	Ortholog of S. equi 4047 (FM204883) SEQ1593
YP_002744107.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002744108.1	Ortholog of S. equi 4047 (FM204883) SEQ1587
YP_002744109.1	Ortholog of S. equi 4047 (FM204883) SEQ1586
YP_002744116.1	similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone
YP_002744118.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_002744122.1	Ortholog of S. equi 4047 (FM204883) SEQ1581
YP_002744123.1	Ortholog of S. equi 4047 (FM204883) SEQ1580
YP_002744124.1	Ortholog of S. equi 4047 (FM204883) SEQ1579
YP_002744125.1	Ortholog of S. equi 4047 (FM204883) SEQ1578
YP_002744126.1	Ortholog of S. equi 4047 (FM204883) SEQ1577
YP_002744127.1	Ortholog of S. equi 4047 (FM204883) SEQ1576
YP_002744128.1	Ortholog of S. equi 4047 (FM204883) SEQ1575
YP_002744129.1	Ortholog of S. equi 4047 (FM204883) SEQ1571
YP_002744130.1	Ortholog of S. equi 4047 (FM204883) SEQ1570
YP_002744131.1	Ortholog of S. equi 4047 (FM204883) SEQ1569
YP_002744132.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002744133.1	Ortholog of S. equi 4047 (FM204883) SEQ1566
YP_002744134.1	Ortholog of S. equi 4047 (FM204883) SEQ0203
YP_002744135.1	Ortholog of S. equi 4047 (FM204883) SEQ0202
YP_002744138.1	Ortholog of S. equi 4047 (FM204883) SEQ1563
YP_002744139.1	Ortholog of S. equi 4047 (FM204883) SEQ1562
YP_002744140.1	Ortholog of S. equi 4047 (FM204883) SEQ1561
YP_002744141.1	Ortholog of S. equi 4047 (FM204883) SEQ1560
YP_002744142.1	Ortholog of S. equi 4047 (FM204883) SEQ1559
YP_002744143.1	Ortholog of S. equi 4047 (FM204883) SEQ1558
YP_002744144.1	Ortholog of S. equi 4047 (FM204883) SEQ1557
YP_002744145.1	Ortholog of S. equi 4047 (FM204883) SEQ1556
YP_002744146.1	Ortholog of S. equi 4047 (FM204883) SEQ1555
YP_002744147.1	Ortholog of S. equi 4047 (FM204883) SEQ1554
YP_002744148.1	Ortholog of S. equi 4047 (FM204883) SEQ1553
YP_002744149.1	Ortholog of S. equi 4047 (FM204883) SEQ1552
YP_002744150.1	Ortholog of S. equi 4047 (FM204883) SEQ1551
YP_002744151.1	Ortholog of S. equi 4047 (FM204883) SEQ1550
YP_002744152.1	Ortholog of S. equi 4047 (FM204883) SEQ1549
YP_002744153.1	Ortholog of S. equi 4047 (FM204883) SEQ1548
YP_002744154.1	Ortholog of S. equi 4047 (FM204883) SEQ1547
YP_002744155.1	Ortholog of S. equi 4047 (FM204883) SEQ1546
YP_002744156.1	Ortholog of S. equi 4047 (FM204883) SEQ1545
YP_002744157.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002744158.1	Ortholog of S. equi 4047 (FM204883) SEQ1543
YP_002744159.1	Ortholog of S. equi 4047 (FM204883) SEQ1542
YP_002744160.1	Ortholog of S. equi 4047 (FM204883) SEQ1541
YP_002744161.1	Ortholog of S. equi 4047 (FM204883) SEQ1540
YP_002744162.1	Ortholog of S. equi 4047 (FM204883) SEQ1539
YP_002744163.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_002744164.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002744165.1	Ortholog of S. equi 4047 (FM204883) SEQ1536
YP_002744166.1	Ortholog of S. equi 4047 (FM204883) SEQ1535
YP_002744167.1	Ortholog of S. equi 4047 (FM204883) SEQ1534
YP_002744168.1	Ortholog of S. equi 4047 (FM204883) SEQ1532
YP_002744169.1	Ortholog of S. equi 4047 (FM204883) SEQ1531
YP_002744170.1	Ortholog of S. equi 4047 (FM204883) SEQ1530
YP_002744171.1	Ortholog of S. equi 4047 (FM204883) SEQ1529
YP_002744172.1	Ortholog of S. equi 4047 (FM204883) SEQ1527
YP_002744173.1	Ortholog of S. equi 4047 (FM204883) SEQ1526
YP_002744174.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002744175.1	Ortholog of S. equi 4047 (FM204883) SEQ1523
YP_002744176.1	Ortholog of S. equi 4047 (FM204883) SEQ1522
YP_002744177.1	Doubtful CDS
YP_002744182.1	Ortholog of S. equi 4047 (FM204883) SEQ1519
YP_002744183.1	Ortholog of S. equi 4047 (FM204883) SEQ1515
YP_002744184.1	Ortholog of S. equi 4047 (FM204883) SEQ1513
YP_002744185.1	Ortholog of S. equi 4047 (FM204883) SEQ1512
YP_002744187.1	Ortholog of S. equi 4047 (FM204883) SEQ1509
YP_002744188.1	Ortholog of S. equi 4047 (FM204883) SEQ1507
YP_002744189.1	Ortholog of S. equi 4047 (FM204883) SEQ1505
YP_002744190.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002744191.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002744192.1	Ortholog of S. equi 4047 (FM204883) SEQ1502
YP_002744193.1	Ortholog of S. equi 4047 (FM204883) SEQ1501
YP_002744194.1	Ortholog of S. equi 4047 (FM204883) SEQ1500
YP_002744195.1	Ortholog of S. equi 4047 (FM204883) SEQ1499
YP_002744196.1	Ortholog of S. equi 4047 (FM204883) SEQ1498
YP_002744197.1	Ortholog of S. equi 4047 (FM204883) SEQ1497
YP_002744198.1	Ortholog of S. equi 4047 (FM204883) SEQ1496
YP_002744199.1	CDS is extended at the C-terminus in comparison to orthologues
YP_002744202.1	Ortholog of S. equi 4047 (FM204883) SEQ1490
YP_002744203.1	Ortholog of S. equi 4047 (FM204883) SEQ1489
YP_002744204.1	Ortholog of S. equi 4047 (FM204883) SEQ1488
YP_002744205.1	Ortholog of S. equi 4047 (FM204883) SEQ1487
YP_002744206.1	Ortholog of S. equi 4047 (FM204883) SEQ1486
YP_002744207.1	Ortholog of S. equi 4047 (FM204883) SEQ1485
YP_002744208.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_002744209.1	Ortholog of S. equi 4047 (FM204883) SEQ1483
YP_002744210.1	Ortholog of S. equi 4047 (FM204883) SEQ1482
YP_002744211.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_002744212.1	Ortholog of S. equi 4047 (FM204883) SEQ1479
YP_002744215.1	Ortholog of S. equi 4047 (FM204883) SEQ1476
YP_002744216.1	Ortholog of S. equi 4047 (FM204883) SEQ1475
YP_002744217.1	Ortholog of S. equi 4047 (FM204883) SEQ1474
YP_002744218.1	Ortholog of S. equi 4047 (FM204883) SEQ1473
YP_002744219.1	Ortholog of S. equi 4047 (FM204883) SEQ1472
YP_002744220.1	Ortholog of S. equi 4047 (FM204883) SEQ1471
YP_002744221.1	Ortholog of S. equi 4047 (FM204883) SEQ1470
YP_002744222.1	Ortholog of S. equi 4047 (FM204883) SEQ1469
YP_002744223.1	Ortholog of S. equi 4047 (FM204883) SEQ1468
YP_002744225.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002744226.1	Ortholog of S. equi 4047 (FM204883) SEQ1465
YP_002744227.1	Ortholog of S. equi 4047 (FM204883) SEQ1464
YP_002744228.1	Ortholog of S. equi 4047 (FM204883) SEQ1463
YP_002744229.1	Ortholog of S. equi 4047 (FM204883) SEQ1462
YP_002744230.1	Ortholog of S. equi 4047 (FM204883) SEQ1461
YP_002744231.1	Ortholog of S. equi 4047 (FM204883) SEQ1460
YP_002744232.1	Ortholog of S. equi 4047 (FM204883) SEQ1459
YP_002744233.1	Ortholog of S. equi 4047 (FM204883) SEQ1458
YP_002744234.1	Ortholog of S. equi 4047 (FM204883) SEQ1457
YP_002744235.1	Ortholog of S. equi 4047 (FM204883) SEQ1456
YP_002744236.1	Ortholog of S. equi 4047 (FM204883) SEQ1455
YP_002744237.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002744238.1	transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid
YP_002744239.1	Ortholog of S. equi 4047 (FM204883) SEQ1452
YP_002744240.1	D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid
YP_002744241.1	Ortholog of S. equi 4047 (FM204883) SEQ1450
YP_002744242.1	Ortholog of S. equi 4047 (FM204883) SEQ1449
YP_002744243.1	Ortholog of S. equi 4047 (FM204883) SEQ1448
YP_002744244.1	Ortholog of S. equi 4047 (FM204883) SEQ1447
YP_002744245.1	Ortholog of S. equi 4047 (FM204883) SEQ1446
YP_002744246.1	Ortholog of S. equi 4047 (FM204883) SEQ1445
YP_002744247.1	Ortholog of S. equi 4047 (FM204883) SEQ1444
YP_002744248.1	Ortholog of S. equi 4047 (FM204883) SEQ1443
YP_002744249.1	Ortholog of S. equi 4047 (FM204883) SEQ1440
YP_002744250.1	Ortholog of S. equi 4047 (FM204883) SEQ1439
YP_002744251.1	Ortholog of S. equi 4047 (FM204883) SEQ1438
YP_002744252.1	Ortholog of S. equi 4047 (FM204883) SEQ1437
YP_002744253.1	amylomaltase; acts to release glucose from maltodextrins
YP_002744254.1	Ortholog of S. equi 4047 (FM204883) SEQ1435
YP_002744255.1	Ortholog of S. equi 4047 (FM204883) SEQ1434
YP_002744256.1	Ortholog of S. equi 4047 (FM204883) SEQ1433
YP_002744257.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002744258.1	Ortholog of S. equi 4047 (FM204883) SEQ1431
YP_002744259.1	Ortholog of S. equi 4047 (FM204883) SEQ1430
YP_002744260.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_002744261.1	Ortholog of S. equi 4047 (FM204883) SEQ1428
YP_002744262.1	Ortholog of S. equi 4047 (FM204883) SEQ1427
YP_002744263.1	Ortholog of S. equi 4047 (FM204883) SEQ1426
YP_002744264.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002744265.1	Ortholog of S. equi 4047 (FM204883) SEQ1424
YP_002744266.1	Ortholog of S. equi 4047 (FM204883) SEQ1423
YP_002744267.1	Ortholog of S. equi 4047 (FM204883) SEQ1422
YP_002744268.1	Ortholog of S. equi 4047 (FM204883) SEQ1421
YP_002744269.1	Ortholog of S. equi 4047 (FM204883) SEQ1420
YP_002744270.1	Ortholog of S. equi 4047 (FM204883) SEQ1419
YP_002744271.1	Ortholog of S. equi 4047 (FM204883) SEQ1418
YP_002744272.1	Ortholog of S. equi 4047 (FM204883) SEQ1417
YP_002744273.1	Ortholog of S. equi 4047 (FM204883) SEQ1416
YP_002744274.1	Ortholog of S. equi 4047 (FM204883) SEQ1415
YP_002744275.1	Ortholog of S. equi 4047 (FM204883) SEQ1414
YP_002744276.1	Ortholog of S. equi 4047 (FM204883) SEQ1413
YP_002744277.1	Ortholog of S. equi 4047 (FM204883) SEQ1412
YP_002744278.1	Ortholog of S. equi 4047 (FM204883) SEQ1411
YP_002744279.1	Ortholog of S. equi 4047 (FM204883) SEQ1410
YP_002744280.1	Ortholog of S. equi 4047 (FM204883) SEQ1409
YP_002744281.1	Ortholog of S. equi 4047 (FM204883) SEQ1408
YP_002744282.1	Ortholog of S. equi 4047 (FM204883) SEQ1407
YP_002744283.1	Ortholog of S. equi 4047 (FM204883) SEQ1406
YP_002744284.1	Ortholog of S. equi 4047 (FM204883) SEQ1405
YP_002744285.1	Ortholog of S. equi 4047 (FM204883) SEQ1404
YP_002744286.1	Ortholog of S. equi 4047 (FM204883) SEQ1403
YP_002744287.1	Ortholog of S. equi 4047 (FM204883) SEQ1402
YP_002744288.1	Ortholog of S. equi 4047 (FM204883) SEQ1401
YP_002744289.1	Ortholog of S. equi 4047 (FM204883) SEQ1400
YP_002744290.1	Ortholog of S. equi 4047 (FM204883) SEQ1399
YP_002744291.1	Ortholog of S. equi 4047 (FM204883) SEQ1398
YP_002744292.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002744293.1	Ortholog of S. equi 4047 (FM204883) SEQ1396
YP_002744294.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002744295.1	Ortholog of S. equi 4047 (FM204883) SEQ1394
YP_002744296.1	Ortholog of S. equi 4047 (FM204883) SEQ1393
YP_002744297.1	Ortholog of S. equi 4047 (FM204883) SEQ1392
YP_002744298.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002744299.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002744300.1	Ortholog of S. equi 4047 (FM204883) SEQ1978
YP_002744310.1	Ortholog of S. equi 4047 (FM204883) SEQ1386; CDS contains a double glycine clevage motif
YP_002744311.1	Ortholog of S. equi 4047 (FM204883) SEQ1381
YP_002744312.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002744313.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_002744314.1	Ortholog of S. equi 4047 (FM204883) SEQ1376
YP_002744315.1	Ortholog of S. equi 4047 (FM204883) SEQ1375
YP_002744316.1	Ortholog of S. equi 4047 (FM204883) SEQ1374
YP_002744317.1	Ortholog of S. equi 4047 (FM204883) SEQ1373
YP_002744318.1	Ortholog of S. equi 4047 (FM204883) SEQ1372
YP_002744319.1	Ortholog of S. equi 4047 (FM204883) SEQ1371
YP_002744320.1	Ortholog of S. equi 4047 (FM204883) SEQ1370
YP_002744321.1	Ortholog of S. equi 4047 (FM204883) SEQ1369
YP_002744322.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002744323.1	Ortholog of S. equi 4047 (FM204883) SEQ1367
YP_002744324.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_002744325.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002744326.1	Ortholog of S. equi 4047 (FM204883) SEQ1363
YP_002744327.1	Ortholog of S. equi 4047 (FM204883) SEQ1362
YP_002744328.1	Ortholog of S. equi 4047 (FM204883) SEQ1359
YP_002744331.1	Ortholog of S. equi 4047 (FM204883) SEQ1358
YP_002744332.1	Ortholog of S. equi 4047 (FM204883) SEQ1360
YP_002744333.1	Ortholog of S. equi 4047 (FM204883) SEQ1357
YP_002744334.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002744335.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_002744336.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002744337.1	Ortholog of S. equi 4047 (FM204883) SEQ1353
YP_002744338.1	Ortholog of S. equi 4047 (FM204883) SEQ1352
YP_002744339.1	Ortholog of S. equi 4047 (FM204883) SEQ1351
YP_002744340.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002744341.1	Ortholog of S. equi 4047 (FM204883) SEQ1349
YP_002744342.1	Ortholog of S. equi 4047 (FM204883) SEQ1348
YP_002744343.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002744344.1	Ortholog of S. equi 4047 (FM204883) SEQ1346
YP_002744345.1	Ortholog of S. equi 4047 (FM204883) SEQ1345
YP_002744346.1	Ortholog of S. equi 4047 (FM204883) SEQ1344
YP_002744347.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002744348.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002744349.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002744350.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002744351.1	Ortholog of S. equi 4047 (FM204883) SEQ1339
YP_002744352.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002744353.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002744354.1	Ortholog of S. equi 4047 (FM204883) SEQ1336
YP_002744355.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002744357.1	Ortholog of S. equi 4047 (FM204883) SEQ0211; Ortholog of S. equi 4047 (FM204883) SEQ2186
YP_002744358.1	Ortholog of S. equi 4047 (FM204883) SEQ0778
YP_002744359.1	Ortholog of S. equi 4047 (FM204883) SEQ1330
YP_002744360.1	Ortholog of S. equi 4047 (FM204883) SEQ1327
YP_002744361.1	Ortholog of S. equi 4047 (FM204883) SEQ1326
YP_002744363.1	Ortholog of S. equi 4047 (FM204883) SEQ1325
YP_002744364.1	Ortholog of S. equi 4047 (FM204883) SEQ1324
YP_002744365.1	Ortholog of S. equi 4047 (FM204883) SEQ1323
YP_002744366.1	involved in the peptidyltransferase reaction during translation
YP_002744367.1	Ortholog of S. equi 4047 (FM204883) SEQ1321
YP_002744368.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002744369.1	Ortholog of S. equi 4047 (FM204883) SEQ1319
YP_002744370.1	Ortholog of S. equi 4047 (FM204883) SEQ1318
YP_002744371.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_002744372.1	Ortholog of S. equi 4047 (FM204883) SEQ1316
YP_002744373.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002744374.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002744375.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_002744376.1	Ortholog of S. equi 4047 (FM204883) SEQ1312
YP_002744377.1	Ortholog of S. equi 4047 (FM204883) SEQ1311
YP_002744378.1	Ortholog of S. equi 4047 (FM204883) SEQ1310
YP_002744379.1	Ortholog of S. equi 4047 (FM204883) SEQ1309
YP_002744380.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002744381.1	Ortholog of S. equi 4047 (FM204883) SEQ1307
YP_002744385.1	Ortholog of S. equi 4047 (FM204883) SEQ0709
YP_002744386.1	Essential for efficient processing of 16S rRNA
YP_002744387.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002744388.1	Ortholog of S. equi 4047 (FM204883) SEQ1304
YP_002744389.1	Ortholog of S. equi 4047 (FM204883) SEQ1303
YP_002744390.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_002744391.1	Ortholog of S. equi 4047 (FM204883) SEQ1301
YP_002744392.1	Ortholog of S. equi 4047 (FM204883) SEQ1300
YP_002744393.1	Ortholog of S. equi 4047 (FM204883) SEQ1299
YP_002744394.1	Ortholog of S. equi 4047 (FM204883) SEQ1298
YP_002744395.1	Ortholog of S. equi 4047 (FM204883) SEQ1296
YP_002744396.1	Ortholog of S. equi 4047 (FM204883) SEQ1295
YP_002744397.1	Ortholog of S. equi 4047 (FM204883) SEQ1292
YP_002744398.1	Ortholog of S. equi 4047 (FM204883) SEQ1291
YP_002744399.1	Ortholog of S. equi 4047 (FM204883) SEQ1288
YP_002744400.1	Ortholog of S. equi 4047 (FM204883) SEQ1287
YP_002744401.1	catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity
YP_002744402.1	Ortholog of S. equi 4047 (FM204883) SEQ1284
YP_002744403.1	Ortholog of S. equi 4047 (FM204883) SEQ1283
YP_002744404.1	Ortholog of S. equi 4047 (FM204883) SEQ1281
YP_002744405.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_002744406.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002744407.1	Ortholog of S. equi 4047 (FM204883) SEQ1278
YP_002744408.1	Ortholog of S. equi 4047 (FM204883) SEQ1277
YP_002744410.1	Ortholog of S. equi 4047 (FM204883) SEQ1104
YP_002744411.1	Ortholog of S. equi 4047 (FM204883) SEQ1105
YP_002744412.1	Ortholog of S. equi 4047 (FM204883) SEQ1106
YP_002744413.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_002744414.1	Ortholog of S. equi 4047 (FM204883) SEQ1108
YP_002744415.1	Ortholog of S. equi 4047 (FM204883) SEQ1109
YP_002744416.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002744417.1	Ortholog of S. equi 4047 (FM204883) SEQ1111
YP_002744418.1	Ortholog of S. equi 4047 (FM204883) SEQ1112
YP_002744419.1	binds and unfolds substrates as part of the ClpXP protease
YP_002744420.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002744421.1	Ortholog of S. equi 4047 (FM204883) SEQ1116
YP_002744422.1	Ortholog of S. equi 4047 (FM204883) SEQ1117
YP_002744423.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002744424.1	Ortholog of S. equi 4047 (FM204883) SEQ1119
YP_002744425.1	Ortholog of S. equi 4047 (FM204883) SEQ1120
YP_002744426.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002744427.1	Ortholog of S. equi 4047 (FM204883) SEQ1122
YP_002744428.1	Ortholog of S. equi 4047 (FM204883) SEQ1123
YP_002744429.1	Ortholog of S. equi 4047 (FM204883) SEQ1124
YP_002744430.1	Ortholog of S. equi 4047 (FM204883) SEQ1125
YP_002744431.1	Ortholog of S. equi 4047 (FM204883) SEQ1126
YP_002744432.1	Ortholog of S. equi 4047 (FM204883) SEQ1127
YP_002744433.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002744434.1	Ortholog of S. equi 4047 (FM204883) SEQ1129
YP_002744435.1	Ortholog of S. equi 4047 (FM204883) SEQ1130
YP_002744436.1	Ortholog of S. equi 4047 (FM204883) SEQ1131
YP_002744437.1	Ortholog of S. equi 4047 (FM204883) SEQ1132
YP_002744438.1	Ortholog of S. equi 4047 (FM204883) SEQ1133
YP_002744439.1	Ortholog of S. equi 4047 (FM204883) SEQ1134
YP_002744440.1	Ortholog of S. equi 4047 (FM204883) SEQ1135
YP_002744441.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002744442.1	Ortholog of S. equi 4047 (FM204883) SEQ1137
YP_002744443.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_002744444.1	Ortholog of S. equi 4047 (FM204883) SEQ1139
YP_002744445.1	Ortholog of S. equi 4047 (FM204883) SEQ1140
YP_002744446.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002744447.1	Ortholog of S. equi 4047 (FM204883) SEQ1142
YP_002744448.1	Ortholog of S. equi 4047 (FM204883) SEQ1143
YP_002744449.1	catalyzes the phosphorylation of NAD to NADP
YP_002744450.1	Ortholog of S. equi 4047 (FM204883) SEQ1145
YP_002744451.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_002744452.1	Ortholog of S. equi 4047 (FM204883) SEQ1147
YP_002744453.1	Ortholog of S. equi 4047 (FM204883) SEQ1148
YP_002744454.1	Ortholog of S. equi 4047 (FM204883) SEQ1149
YP_002744455.1	Ortholog of S. equi 4047 (FM204883) SEQ1151
YP_002744456.1	Ortholog of S. equi 4047 (FM204883) SEQ1153
YP_002744457.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_002744458.1	Ortholog of S. equi 4047 (FM204883) SEQ1155
YP_002744459.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_002744460.1	Ortholog of S. equi 4047 (FM204883) SEQ1160
YP_002744461.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002744462.1	Ortholog of S. equi 4047 (FM204883) SEQ1162
YP_002744463.1	Ortholog of S. equi 4047 (FM204883) SEQ1163
YP_002744464.1	Ortholog of S. equi 4047 (FM204883) SEQ1164
YP_002744465.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002744466.1	Ortholog of S. equi 4047 (FM204883) SEQ1166
YP_002744467.1	Ortholog of S. equi 4047 (FM204883) SEQ1167
YP_002744468.1	Ortholog of S. equi 4047 (FM204883) SEQ1168
YP_002744469.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002744470.1	negatively supercoils closed circular double-stranded DNA
YP_002744471.1	Ortholog of S. equi 4047 (FM204883) SEQ1171
YP_002744472.1	Ortholog of S. equi 4047 (FM204883) SEQ1172
YP_002744473.1	Ortholog of S. equi 4047 (FM204883) SEQ1173; Doubtful CDS
YP_002744474.1	Ortholog of S. equi 4047 (FM204883) SEQ1174
YP_002744475.1	Ortholog of S. equi 4047 (FM204883) SEQ1175; Possible gene remnant. CDS is truncated at the C-terminus in comparison to orthologues
YP_002744476.1	Ortholog of S. equi 4047 (FM204883) SEQ1177
YP_002744477.1	Ortholog of S. equi 4047 (FM204883) SEQ1178
YP_002744478.1	Ortholog of S. equi 4047 (FM204883) SEQ1179
YP_002744479.1	Ortholog of S. equi 4047 (FM204883) SEQ1180
YP_002744480.1	Ortholog of S. equi 4047 (FM204883) SEQ1181
YP_002744481.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002744482.1	Ortholog of S. equi 4047 (FM204883) SEQ1184
YP_002744483.1	Ortholog of S. equi 4047 (FM204883) SEQ1185
YP_002744493.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS
YP_002744494.1	Ortholog of S. equi 4047 (FM204883) SEQ1187
YP_002744495.1	Ortholog of S. equi 4047 (FM204883) SEQ1188
YP_002744496.1	Ortholog of S. equi 4047 (FM204883) SEQ1189
YP_002744497.1	Ortholog of S. equi 4047 (FM204883) SEQ1193
YP_002744498.1	Ortholog of S. equi 4047 (FM204883) SEQ1194
YP_002744499.1	Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source
YP_002744500.1	2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate
YP_002744501.1	Ortholog of S. equi 4047 (FM204883) SEQ1199
YP_002744502.1	Ortholog of S. equi 4047 (FM204883) SEQ1200
YP_002744503.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_002744504.1	Ortholog of S. equi 4047 (FM204883) SEQ1202
YP_002744505.1	Ortholog of S. equi 4047 (FM204883) SEQ1203
YP_002744506.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002744507.1	Ortholog of S. equi 4047 (FM204883) SEQ1205
YP_002744508.1	Ortholog of S. equi 4047 (FM204883) SEQ1206
YP_002744509.1	Ortholog of S. equi 4047 (FM204883) SEQ1207
YP_002744510.1	Ortholog of S. equi 4047 (FM204883) SEQ1208
YP_002744512.1	Ortholog of S. equi 4047 (FM204883) SEQ1211
YP_002744513.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_002744514.1	Ortholog of S. equi 4047 (FM204883) SEQ1217
YP_002744515.1	Ortholog of S. equi 4047 (FM204883) SEQ1218
YP_002744516.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002744517.1	Ortholog of S. equi 4047 (FM204883) SEQ1220
YP_002744518.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002744519.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_002744520.1	Ortholog of S. equi 4047 (FM204883) SEQ1223
YP_002744526.1	Ortholog of S. equi 4047 (FM204883) SEQ1098
YP_002744527.1	Ortholog of S. equi 4047 (FM204883) SEQ1097
YP_002744528.1	Ortholog of S. equi 4047 (FM204883) SEQ1096
YP_002744529.1	Ortholog of S. equi 4047 (FM204883) SEQ1095
YP_002744530.1	Ortholog of S. equi 4047 (FM204883) SEQ1094
YP_002744531.1	Ortholog of S. equi 4047 (FM204883) SEQ1093
YP_002744532.1	Ortholog of S. equi 4047 (FM204883) SEQ1092
YP_002744533.1	Ortholog of S. equi 4047 (FM204883) SEQ1091
YP_002744534.1	Ortholog of S. equi 4047 (FM204883) SEQ1090
YP_002744535.1	Ortholog of S. equi 4047 (FM204883) SEQ1088
YP_002744536.1	Ortholog of S. equi 4047 (FM204883) SEQ1087
YP_002744537.1	Ortholog of S. equi 4047 (FM204883) SEQ1086
YP_002744538.1	Ortholog of S. equi 4047 (FM204883) SEQ1085
YP_002744539.1	Ortholog of S. equi 4047 (FM204883) SEQ1084
YP_002744540.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_002744541.1	Ortholog of S. equi 4047 (FM204883) SEQ1082
YP_002744542.1	Ortholog of S. equi 4047 (FM204883) SEQ1081
YP_002744543.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002744544.1	Ortholog of S. equi 4047 (FM204883) SEQ1078
YP_002744545.1	Ortholog of S. equi 4047 (FM204883) SEQ1077
YP_002744546.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_002744547.1	Ortholog of S. equi 4047 (FM204883) SEQ1074
YP_002744548.1	decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.
YP_002744549.1	Ortholog of S. equi 4047 (FM204883) SEQ1072
YP_002744550.1	Ortholog of S. equi 4047 (FM204883) SEQ1067
YP_002744551.1	Ortholog of S. equi 4047 (FM204883) SEQ1064
YP_002744552.1	Ortholog of S. equi 4047 (FM204883) SEQ1063
YP_002744553.1	Ortholog of S. equi 4047 (FM204883) SEQ1062
YP_002744554.1	Ortholog of S. equi 4047 (FM204883) SEQ1061
YP_002744555.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002744556.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_002744557.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_002744558.1	Ortholog of S. equi 4047 (FM204883) SEQ1057
YP_002744559.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_002744560.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002744562.1	Ortholog of S. equi 4047 (FM204883) SEQ1053
YP_002744563.1	Ortholog of S. equi 4047 (FM204883) SEQ1052
YP_002744565.1	Ortholog of S. equi 4047 (FM204883) SEQ1051
YP_002744566.1	Possible gene remnant, CDS is truncated at the C-terminus in comparison to similar proteins
YP_002744568.1	Possible gene remnant, CDS is truncated at the C-terminus in comparison to similar proteins
YP_002744571.1	Ortholog of S. equi 4047 (FM204883) SEQ1857
YP_002744572.1	Ortholog of S. equi 4047 (FM204883) SEQ1050
YP_002744573.1	Ortholog of S. equi 4047 (FM204883) SEQ1049
YP_002744574.1	Ortholog of S. equi 4047 (FM204883) SEQ1048
YP_002744575.1	Ortholog of S. equi 4047 (FM204883) SEQ1047
YP_002744576.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002744577.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002744578.1	Ortholog of S. equi 4047 (FM204883) SEQ1044
YP_002744579.1	Ortholog of S. equi 4047 (FM204883) SEQ1043
YP_002744580.1	Ortholog of S. equi 4047 (FM204883) SEQ1042
YP_002744581.1	Ortholog of S. equi 4047 (FM204883) SEQ1041
YP_002744582.1	Ortholog of S. equi 4047 (FM204883) SEQ1040
YP_002744583.1	Ortholog of S. equi 4047 (FM204883) SEQ1039
YP_002744584.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002744585.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002744586.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002744587.1	Ortholog of S. equi 4047 (FM204883) SEQ1035
YP_002744588.1	Ortholog of S. equi 4047 (FM204883) SEQ1033
YP_002744589.1	Ortholog of S. equi 4047 (FM204883) SEQ1032
YP_002744590.1	Ortholog of S. equi 4047 (FM204883) SEQ1031
YP_002744591.1	Ortholog of S. equi 4047 (FM204883) SEQ1030
YP_002744592.1	Ortholog of S. equi 4047 (FM204883) SEQ1029
YP_002744593.1	Ortholog of S. equi 4047 (FM204883) SEQ1028
YP_002744594.1	Ortholog of S. equi 4047 (FM204883) SEQ1027
YP_002744595.1	Ortholog of S. equi 4047 (FM204883) SEQ1026
YP_002744596.1	Ortholog of S. equi 4047 (FM204883) SEQ1025
YP_002744597.1	Ortholog of S. equi 4047 (FM204883) SEQ1024
YP_002744598.1	Ortholog of S. equi 4047 (FM204883) SEQ1023
YP_002744599.1	Ortholog of S. equi 4047 (FM204883) SEQ1022
YP_002744600.1	Ortholog of S. equi 4047 (FM204883) SEQ1021
YP_002744601.1	Ortholog of S. equi 4047 (FM204883) SEQ1020
YP_002744602.1	Ortholog of S. equi 4047 (FM204883) SEQ1019
YP_002744603.1	Ortholog of S. equi 4047 (FM204883) SEQ1018
YP_002744604.1	Ortholog of S. equi 4047 (FM204883) SEQ1017
YP_002744605.1	Ortholog of S. equi 4047 (FM204883) SEQ1016
YP_002744606.1	Ortholog of S. equi 4047 (FM204883) SEQ1015
YP_002744607.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002744608.1	Ortholog of S. equi 4047 (FM204883) SEQ1013
YP_002744609.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002744610.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_002744611.1	Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_002744612.1	Ortholog of S. equi 4047 (FM204883) SEQ1005
YP_002744613.1	Ortholog of S. equi 4047 (FM204883) SEQ1004
YP_002744614.1	Ortholog of S. equi 4047 (FM204883) SEQ1003
YP_002744615.1	Ortholog of S. equi 4047 (FM204883) SEQ1002
YP_002744616.1	Ortholog of S. equi 4047 (FM204883) SEQ1001
YP_002744617.1	Ortholog of S. equi 4047 (FM204883) SEQ0999
YP_002744618.1	Ortholog of S. equi 4047 (FM204883) SEQ0998
YP_002744619.1	Required for the synthesis of the thiazole moiety
YP_002744620.1	Ortholog of S. equi 4047 (FM204883) SEQ0996
YP_002744621.1	Ortholog of S. equi 4047 (FM204883) SEQ0995
YP_002744622.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_002744623.1	Ortholog of S. equi 4047 (FM204883) SEQ0993
YP_002744624.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002744625.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_002744626.1	Ortholog of S. equi 4047 (FM204883) SEQ0990
YP_002744627.1	Ortholog of S. equi 4047 (FM204883) SEQ0985
YP_002744628.1	Ortholog of S. equi 4047 (FM204883) SEQ0984
YP_002744629.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002744630.1	Ortholog of S. equi 4047 (FM204883) SEQ0982
YP_002744631.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002744633.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002744634.1	Ortholog of S. equi 4047 (FM204883) SEQ0979
YP_002744635.1	Ortholog of S. equi 4047 (FM204883) SEQ0978
YP_002744636.1	Ortholog of S. equi 4047 (FM204883) SEQ0977
YP_002744637.1	Ortholog of S. equi 4047 (FM204883) SEQ0976
YP_002744638.1	Ortholog of S. equi 4047 (FM204883) SEQ0975
YP_002744639.1	Ortholog of S. equi 4047 (FM204883) SEQ0974
YP_002744640.1	Ortholog of S. equi 4047 (FM204883) SEQ0973
YP_002744641.1	Ortholog of S. equi 4047 (FM204883) SEQ0972
YP_002744642.1	Ortholog of S. equi 4047 (FM204883) SEQ0971
YP_002744643.1	Ortholog of S. equi 4047 (FM204883) SEQ0970
YP_002744644.1	Ortholog of S. equi 4047 (FM204883) SEQ0969
YP_002744645.1	Ortholog of S. equi 4047 (FM204883) SEQ0968
YP_002744646.1	Ortholog of S. equi 4047 (FM204883) SEQ0967
YP_002744647.1	Ortholog of S. equi 4047 (FM204883) SEQ0966
YP_002744648.1	Ortholog of S. equi 4047 (FM204883) SEQ0965
YP_002744649.1	Ortholog of S. equi 4047 (FM204883) SEQ0964
YP_002744650.1	Ortholog of S. equi 4047 (FM204883) SEQ0963
YP_002744651.1	Ortholog of S. equi 4047 (FM204883) SEQ0962
YP_002744652.1	Ortholog of S. equi 4047 (FM204883) SEQ0961
YP_002744653.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_002744654.1	synthesizes RNA primers at the replication forks
YP_002744655.1	Ortholog of S. equi 4047 (FM204883) SEQ0958
YP_002744656.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002744657.1	Ortholog of S. equi 4047 (FM204883) SEQ0955
YP_002744658.1	associated with arginine deiminase pathway genes; probably functions in arginine catabolism
YP_002744659.1	Ortholog of S. equi 4047 (FM204883) SEQ0953
YP_002744660.1	Ortholog of S. equi 4047 (FM204883) SEQ0952
YP_002744661.1	Ortholog of S. equi 4047 (FM204883) SEQ0951
YP_002744662.1	Ortholog of S. equi 4047 (FM204883) SEQ0950
YP_002744663.1	Ortholog of S. equi 4047 (FM204883) SEQ0949
YP_002744664.1	Ortholog of S. equi 4047 (FM204883) SEQ0948
YP_002744665.1	Ortholog of S. equi 4047 (FM204883) SEQ0947
YP_002744666.1	Ortholog of S. equi 4047 (FM204883) SEQ0946
YP_002744667.1	Ortholog of S. equi 4047 (FM204883) SEQ0945
YP_002744668.1	Ortholog of S. equi 4047 (FM204883) SEQ0944
YP_002744669.1	Ortholog of S. equi 4047 (FM204883) SEQ0942
YP_002744670.1	Ortholog of S. equi 4047 (FM204883) SEQ0941
YP_002744671.1	Ortholog of S. equi 4047 (FM204883) SEQ0940
YP_002744672.1	Ortholog of S. equi 4047 (FM204883) SEQ1721
YP_002744673.1	Ortholog of S. equi 4047 (FM204883) SEQ0939
YP_002744674.1	Ortholog of S. equi 4047 (FM204883) SEQ0938
YP_002744675.1	Ortholog of S. equi 4047 (FM204883) SEQ0937
YP_002744676.1	Ortholog of S. equi 4047 (FM204883) SEQ0936
YP_002744677.1	Ortholog of S. equi 4047 (FM204883) SEQ0935
YP_002744678.1	Ortholog of S. equi 4047 (FM204883) SEQ0934
YP_002744679.1	Ortholog of S. equi 4047 (FM204883) SEQ0933
YP_002744680.1	Ortholog of S. equi 4047 (FM204883) SEQ0932
YP_002744681.1	Ortholog of S. equi 4047 (FM204883) SEQ0931
YP_002744682.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002744683.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002744684.1	Ortholog of S. equi 4047 (FM204883) SEQ0928
YP_002744685.1	Ortholog of S. equi 4047 (FM204883) SEQ0927
YP_002744686.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002744687.1	Ortholog of S. equi 4047 (FM204883) SEQ0925
YP_002744688.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002744689.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002744690.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002744691.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002744692.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002744693.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002744694.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002744695.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_002744696.1	Ortholog of S. equi 4047 (FM204883) SEQ0914
YP_002744697.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_002744698.1	Ortholog of S. equi 4047 (FM204883) SEQ0912
YP_002744699.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_002744700.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002744701.1	Ortholog of S. equi 4047 (FM204883) SEQ0908
YP_002744702.1	similar to YegS from E. coli
YP_002744703.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002744704.1	Ortholog of S. equi 4047 (FM204883) SEQ0905
YP_002744705.1	Ortholog of S. equi 4047 (FM204883) SEQ0904
YP_002744706.1	Ortholog of S. equi 4047 (FM204883) SEQ0903
YP_002744707.1	Ortholog of S. equi 4047 (FM204883) SEQ0901
YP_002744708.1	Ortholog of S. equi 4047 (FM204883) SEQ0900
YP_002744709.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002744710.1	Ortholog of S. equi 4047 (FM204883) SEQ0897
YP_002744711.1	Ortholog of S. equi 4047 (FM204883) SEQ0896
YP_002744712.1	acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation
YP_002744713.1	negatively supercoils closed circular double-stranded DNA
YP_002744714.1	Ortholog of S. equi 4047 (FM204883) SEQ0893
YP_002744715.1	Ortholog of S. equi 4047 (FM204883) SEQ0892
YP_002744716.1	Ortholog of S. equi 4047 (FM204883) SEQ0891
YP_002744717.1	Ortholog of S. equi 4047 (FM204883) SEQ0890
YP_002744718.1	Ortholog of S. equi 4047 (FM204883) SEQ0889
YP_002744719.1	Ortholog of S. equi 4047 (FM204883) SEQ0888
YP_002744720.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002744721.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_002744722.1	Ortholog of S. equi 4047 (FM204883) SEQ0885
YP_002744723.1	Ortholog of S. equi 4047 (FM204883) SEQ0884
YP_002744724.1	Ortholog of S. equi 4047 (FM204883) SEQ0883
YP_002744725.1	Ortholog of S. equi 4047 (FM204883) SEQ0882
YP_002744726.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002744727.1	Ortholog of S. equi 4047 (FM204883) SEQ0880
YP_002744728.1	Ortholog of S. equi 4047 (FM204883) SEQ0879
YP_002744730.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002744731.1	Ortholog of S. equi 4047 (FM204883) SEQ0877
YP_002744732.1	Ortholog of S. equi 4047 (FM204883) SEQ0876
YP_002744733.1	Ortholog of S. equi 4047 (FM204883) SEQ0875
YP_002744734.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002744735.1	Ortholog of S. equi 4047 (FM204883) SEQ0873
YP_002744736.1	Ortholog of S. equi 4047 (FM204883) SEQ0872
YP_002744737.1	Ortholog of S. equi 4047 (FM204883) SEQ0871
YP_002744738.1	Ortholog of S. equi 4047 (FM204883) SEQ0870
YP_002744739.1	Ortholog of S. equi 4047 (FM204883) SEQ0866
YP_002744740.1	Ortholog of S. equi 4047 (FM204883) SEQ0865
YP_002744741.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources
YP_002744742.1	Ortholog of S. equi 4047 (FM204883) SEQ0863
YP_002744743.1	Ortholog of S. equi 4047 (FM204883) SEQ0862
YP_002744744.1	Ortholog of S. equi 4047 (FM204883) SEQ0861
YP_002744745.1	Ortholog of S. equi 4047 (FM204883) SEQ0860
YP_002744746.1	Ortholog of S. equi 4047 (FM204883) SEQ0859
YP_002744747.1	Ortholog of S. equi 4047 (FM204883) SEQ0858
YP_002744748.1	Ortholog of S. equi 4047 (FM204883) SEQ0857
YP_002744749.1	Ortholog of S. equi 4047 (FM204883) SEQ0855
YP_002744750.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002744751.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002744752.1	Ortholog of S. equi 4047 (FM204883) SEQ0852
YP_002744753.1	unwinds DNA
YP_002744754.1	Ortholog of S. equi 4047 (FM204883) SEQ0785
YP_002744755.1	Ortholog of S. equi 4047 (FM204883) SEQ0784
YP_002744756.1	Ortholog of S. equi 4047 (FM204883) SEQ0783
YP_002744757.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_002744758.1	Ortholog of S. equi 4047 (FM204883) SEQ0781
YP_002744767.1	Ortholog of S. equi 4047 (FM204883) SEQ0777
YP_002744768.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_002744769.1	Ortholog of S. equi 4047 (FM204883) SEQ0774
YP_002744770.1	Ortholog of S. equi 4047 (FM204883) SEQ0773
YP_002744771.1	Ortholog of S. equi 4047 (FM204883) SEQ0772
YP_002744772.1	Ortholog of S. equi 4047 (FM204883) SEQ0770
YP_002744773.1	Ortholog of S. equi 4047 (FM204883) SEQ0769
YP_002744774.1	Ortholog of S. equi 4047 (FM204883) SEQ0768
YP_002744775.1	Ortholog of S. equi 4047 (FM204883) SEQ0767
YP_002744776.1	Ortholog of S. equi 4047 (FM204883) SEQ0766
YP_002744777.1	Ortholog of S. equi 4047 (FM204883) SEQ0765
YP_002744778.1	Ortholog of S. equi 4047 (FM204883) SEQ0764
YP_002744781.1	Possible gene remnant
YP_002744782.1	Ortholog of S. equi 4047 (FM204883) SEQ0756
YP_002744783.1	Ortholog of S. equi 4047 (FM204883) SEQ0755
YP_002744784.1	Ortholog of S. equi 4047 (FM204883) SEQ0750
YP_002744787.1	Ortholog of S. equi 4047 (FM204883) SEQ1765
YP_002744788.1	Ortholog of S. equi 4047 (FM204883) SEQ1231
YP_002744793.1	Ortholog of S. equi 4047 (FM204883) SEQ1249
YP_002744794.1	Ortholog of S. equi 4047 (FM204883) SEQ1250
YP_002744796.1	Ortholog of S. equi 4047 (FM204883) SEQ0752
YP_002744799.1	Ortholog of S. equi 4047 (FM204883) SEQ1256
YP_002744800.1	Ortholog of S. equi 4047 (FM204883) SEQ0745
YP_002744801.1	Ortholog of S. equi 4047 (FM204883) SEQ0744
YP_002744802.1	Ortholog of S. equi 4047 (FM204883) SEQ0743
YP_002744803.1	Ortholog of S. equi 4047 (FM204883) SEQ0742; Similar to Clostridium difficile (strain 630) conjugal transfer protein UniProt:Q188K2 (EMBL:AM180355) (797 aa) fasta scores: E()=0, 96.7% id in 796 aa
YP_002744804.1	Ortholog of S. equi 4047 (FM204883) SEQ0741
YP_002744805.1	Ortholog of S. equi 4047 (FM204883) SEQ0740
YP_002744806.1	Ortholog of S. equi 4047 (FM204883) SEQ0738
YP_002744807.1	Ortholog of S. equi 4047 (FM204883) SEQ0736
YP_002744809.1	Ortholog of S. equi 4047 (FM204883) SEQ0732
YP_002744810.1	Ortholog of S. equi 4047 (FM204883) SEQ0731
YP_002744811.1	Ortholog of S. equi 4047 (FM204883) SEQ0730
YP_002744812.1	Ortholog of S. equi 4047 (FM204883) SEQ0730a
YP_002744813.1	Ortholog of S. equi 4047 (FM204883) SEQ0729
YP_002744814.1	Ortholog of S. equi 4047 (FM204883) SEQ0728
YP_002744815.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002744816.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002744817.1	Ortholog of S. equi 4047 (FM204883) SEQ0725
YP_002744818.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides
YP_002744819.1	Ortholog of S. equi 4047 (FM204883) SEQ0723
YP_002744820.1	Ortholog of S. equi 4047 (FM204883) SEQ0722
YP_002744821.1	Ortholog of S. equi 4047 (FM204883) SEQ0721
YP_002744822.1	Ortholog of S. equi 4047 (FM204883) SEQ0720
YP_002744823.1	Ortholog of S. equi 4047 (FM204883) SEQ0719
YP_002744824.1	Converts D-mannonate to D-mannuronate
YP_002744825.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_002744826.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_002744827.1	Ortholog of S. equi 4047 (FM204883) SEQ0715
YP_002744828.1	Ortholog of S. equi 4047 (FM204883) SEQ0714
YP_002744829.1	Ortholog of S. equi 4047 (FM204883) SEQ0713
YP_002744830.1	Ortholog of S. equi 4047 (FM204883) SEQ0712
YP_002744831.1	Ortholog of S. equi 4047 (FM204883) SEQ0711
YP_002744832.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002744833.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002744834.1	Ortholog of S. equi 4047 (FM204883) SEQ0705
YP_002744835.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_002744836.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002744837.1	Ortholog of S. equi 4047 (FM204883) SEQ0702
YP_002744838.1	Ortholog of S. equi 4047 (FM204883) SEQ0701
YP_002744839.1	Ortholog of S. equi 4047 (FM204883) SEQ0700
YP_002744840.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_002744841.1	Ortholog of S. equi 4047 (FM204883) SEQ0698
YP_002744842.1	Ortholog of S. equi 4047 (FM204883) SEQ0697
YP_002744843.1	Ortholog of S. equi 4047 (FM204883) SEQ0696
YP_002744844.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002744845.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002744846.1	Ortholog of S. equi 4047 (FM204883) SEQ0693
YP_002744847.1	Ortholog of S. equi 4047 (FM204883) SEQ0692
YP_002744848.1	Ortholog of S. equi 4047 (FM204883) SEQ0691
YP_002744849.1	Ortholog of S. equi 4047 (FM204883) SEQ0690
YP_002744850.1	Ortholog of S. equi 4047 (FM204883) SEQ0689
YP_002744851.1	Ortholog of S. equi 4047 (FM204883) SEQ0685
YP_002744852.1	Ortholog of S. equi 4047 (FM204883) SEQ0684
YP_002744853.1	Ortholog of S. equi 4047 (FM204883) SEQ0683
YP_002744854.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002744855.1	Ortholog of S. equi 4047 (FM204883) SEQ0681
YP_002744857.1	Ortholog of S. equi 4047 (FM204883) SEQ0680
YP_002744858.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_002744859.1	Ortholog of S. equi 4047 (FM204883) SEQ0678
YP_002744860.1	Ortholog of S. equi 4047 (FM204883) SEQ0677
YP_002744861.1	Ortholog of S. equi 4047 (FM204883) SEQ0676
YP_002744862.1	Ortholog of S. equi 4047 (FM204883) SEQ0675
YP_002744863.1	Ortholog of S. equi 4047 (FM204883) SEQ0674
YP_002744864.1	Ortholog of S. equi 4047 (FM204883) SEQ0671
YP_002744865.1	Ortholog of S. equi 4047 (FM204883) SEQ0670
YP_002744866.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_002744867.1	Ortholog of S. equi 4047 (FM204883) SEQ0668
YP_002744868.1	Ortholog of S. equi 4047 (FM204883) SEQ0667
YP_002744869.1	Ortholog of S. equi 4047 (FM204883) SEQ1079
YP_002744870.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002744872.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002744873.1	Ortholog of S. equi 4047 (FM204883) SEQ0660
YP_002744874.1	Ortholog of S. equi 4047 (FM204883) SEQ0659
YP_002744875.1	Ortholog of S. equi 4047 (FM204883) SEQ0658
YP_002744876.1	Ortholog of S. equi 4047 (FM204883) SEQ0657
YP_002744877.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002744878.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group
YP_002744879.1	Ortholog of S. equi 4047 (FM204883) SEQ0654
YP_002744880.1	Ortholog of S. equi 4047 (FM204883) SEQ0653
YP_002744881.1	Ortholog of S. equi 4047 (FM204883) SEQ0652
YP_002744882.1	Ortholog of S. equi 4047 (FM204883) SEQ0651
YP_002744883.1	Ortholog of S. equi 4047 (FM204883) SEQ0650
YP_002744884.1	Ortholog of S. equi 4047 (FM204883) SEQ0649
YP_002744885.1	Ortholog of S. equi 4047 (FM204883) SEQ0648
YP_002744886.1	Ortholog of S. equi 4047 (FM204883) SEQ0647
YP_002744887.1	Ortholog of S. equi 4047 (FM204883) SEQ0646
YP_002744888.1	Ortholog of S. equi 4047 (FM204883) SEQ0645
YP_002744889.1	Ortholog of S. equi 4047 (FM204883) SEQ0644
YP_002744890.1	Ortholog of S. equi 4047 (FM204883) SEQ0643
YP_002744891.1	Ortholog of S. equi 4047 (FM204883) SEQ0642
YP_002744892.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_002744893.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002744894.1	Ortholog of S. equi 4047 (FM204883) SEQ0639
YP_002744895.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002744896.1	Ortholog of S. equi 4047 (FM204883) SEQ0637
YP_002744897.1	Ortholog of S. equi 4047 (FM204883) SEQ0635
YP_002744898.1	Ortholog of S. equi 4047 (FM204883) SEQ0634
YP_002744899.1	Ortholog of S. equi 4047 (FM204883) SEQ0633
YP_002744900.1	Ortholog of S. equi 4047 (FM204883) SEQ0631
YP_002744901.1	Ortholog of S. equi 4047 (FM204883) SEQ0630
YP_002744902.1	Ortholog of S. equi 4047 (FM204883) SEQ0629
YP_002744903.1	Ortholog of S. equi 4047 (FM204883) SEQ0628
YP_002744904.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme
YP_002744905.1	Ortholog of S. equi 4047 (FM204883) SEQ0626
YP_002744906.1	Ortholog of S. equi 4047 (FM204883) SEQ0625
YP_002744907.1	Ortholog of S. equi 4047 (FM204883) SEQ0624
YP_002744908.1	Ortholog of S. equi 4047 (FM204883) SEQ0623
YP_002744909.1	Ortholog of S. equi 4047 (FM204883) SEQ0622
YP_002744910.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002744911.1	Ortholog of S. equi 4047 (FM204883) SEQ0620
YP_002744912.1	Ortholog of S. equi 4047 (FM204883) SEQ0619
YP_002744913.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002744914.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002744915.1	Ortholog of S. equi 4047 (FM204883) SEQ0616
YP_002744916.1	Ortholog of S. equi 4047 (FM204883) SEQ0615
YP_002744917.1	Ortholog of S. equi 4047 (FM204883) SEQ0614
YP_002744918.1	Ortholog of S. equi 4047 (FM204883) SEQ0613
YP_002744919.1	Ortholog of S. equi 4047 (FM204883) SEQ0612
YP_002744920.1	Ortholog of S. equi 4047 (FM204883) SEQ0611
YP_002744921.1	Ortholog of S. equi 4047 (FM204883) SEQ0610
YP_002744926.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002744927.1	Ortholog of S. equi 4047 (FM204883) SEQ0608
YP_002744928.1	Ortholog of S. equi 4047 (FM204883) SEQ0606
YP_002744929.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002744930.1	Ortholog of S. equi 4047 (FM204883) SEQ0604
YP_002744932.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_002744933.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_002744934.1	Ortholog of S. equi 4047 (FM204883) SEQ0601
YP_002744935.1	Ortholog of S. equi 4047 (FM204883) SEQ0600
YP_002744936.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_002744937.1	Ortholog of S. equi 4047 (FM204883) SEQ0598
YP_002744938.1	catalyzes the degradation of arginine to citruline and ammonia
YP_002744939.1	Ortholog of S. equi 4047 (FM204883) SEQ0596
YP_002744940.1	Ortholog of S. equi 4047 (FM204883) SEQ0594
YP_002744941.1	Ortholog of S. equi 4047 (FM204883) SEQ0593
YP_002744942.1	Ortholog of S. equi 4047 (FM204883) SEQ0592
YP_002744943.1	Ortholog of S. equi 4047 (FM204883) SEQ0591
YP_002744944.1	Ortholog of S. equi 4047 (FM204883) SEQ0590
YP_002744945.1	Ortholog of S. equi 4047 (FM204883) SEQ0589
YP_002744946.1	Ortholog of S. equi 4047 (FM204883) SEQ0588
YP_002744947.1	Ortholog of S. equi 4047 (FM204883) SEQ0587
YP_002744948.1	Ortholog of S. equi 4047 (FM204883) SEQ0585
YP_002744972.1	Ortholog of S. equi 4047 (FM204883) SEQ0583
YP_002744973.1	Ortholog of S. equi 4047 (FM204883) SEQ0582
YP_002744974.1	Ortholog of S. equi 4047 (FM204883) SEQ0581
YP_002744975.1	Ortholog of S. equi 4047 (FM204883) SEQ0580
YP_002744976.1	Ortholog of S. equi 4047 (FM204883) SEQ0579
YP_002744977.1	Ortholog of S. equi 4047 (FM204883) SEQ0578
YP_002744978.1	Ortholog of S. equi 4047 (FM204883) SEQ0577
YP_002744983.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002744984.1	Ortholog of S. equi 4047 (FM204883) SEQ0571
YP_002744985.1	Ortholog of S. equi 4047 (FM204883) SEQ0570
YP_002744988.1	CDS contains a double glycine clevage motif
YP_002744989.1	Possible competence stimulating peptide. Contains a weak match to a double glycine clevage motif
YP_002744990.1	CDS contains a double glycine clevage motif
YP_002744993.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002744994.1	Ortholog of S. equi 4047 (FM204883) SEQ0568
YP_002744996.1	Ortholog of S. equi 4047 (FM204883) SEQ0566
YP_002744997.1	Ortholog of S. equi 4047 (FM204883) SEQ0564
YP_002744998.1	Ortholog of S. equi 4047 (FM204883) SEQ0563
YP_002744999.1	Ortholog of S. equi 4047 (FM204883) SEQ0562
YP_002745000.1	Ortholog of S. equi 4047 (FM204883) SEQ0561
YP_002745001.1	Ortholog of S. equi 4047 (FM204883) SEQ0560
YP_002745002.1	Ortholog of S. equi 4047 (FM204883) SEQ0559
YP_002745003.1	Ortholog of S. equi 4047 (FM204883) SEQ0558
YP_002745005.1	Ortholog of S. equi 4047 (FM204883) SEQ0557
YP_002745007.1	Ortholog of S. equi 4047 (FM204883) SEQ0554
YP_002745008.1	Ortholog of S. equi 4047 (FM204883) SEQ0553
YP_002745009.1	Ortholog of S. equi 4047 (FM204883) SEQ0552
YP_002745010.1	Ortholog of S. equi 4047 (FM204883) SEQ0551
YP_002745011.1	Ortholog of S. equi 4047 (FM204883) SEQ0550
YP_002745012.1	Ortholog of S. equi 4047 (FM204883) SEQ0549
YP_002745013.1	Ortholog of S. equi 4047 (FM204883) SEQ0548
YP_002745014.1	Ortholog of S. equi 4047 (FM204883) SEQ0547
YP_002745015.1	Ortholog of S. equi 4047 (FM204883) SEQ0546
YP_002745016.1	Ortholog of S. equi 4047 (FM204883) SEQ0545
YP_002745017.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002745018.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002745019.1	Ortholog of S. equi 4047 (FM204883) SEQ0542
YP_002745024.1	Ortholog of S. equi 4047 (FM204883) SEQ0540
YP_002745025.1	Ortholog of S. equi 4047 (FM204883) SEQ0539
YP_002745026.1	Ortholog of S. equi 4047 (FM204883) SEQ0538
YP_002745027.1	Ortholog of S. equi 4047 (FM204883) SEQ0537
YP_002745031.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_002745034.1	Ortholog of S. equi 4047 (FM204883) SEQ0536
YP_002745035.1	Ortholog of S. equi 4047 (FM204883) SEQ0535
YP_002745036.1	Ortholog of S. equi 4047 (FM204883) SEQ0534
YP_002745037.1	Ortholog of S. equi 4047 (FM204883) SEQ0533
YP_002745038.1	Ortholog of S. equi 4047 (FM204883) SEQ0532
YP_002745039.1	catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside
YP_002745043.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources
YP_002745044.1	Ortholog of S. equi 4047 (FM204883) SEQ0529
YP_002745045.1	catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate
YP_002745046.1	catalyzes the interconversion of galactose 6-phosphate to tagatose
YP_002745047.1	Ortholog of S. equi 4047 (FM204883) SEQ0526
YP_002745048.1	Ortholog of S. equi 4047 (FM204883) SEQ0525
YP_002745049.1	Ortholog of S. equi 4047 (FM204883) SEQ0524
YP_002745050.1	Ortholog of S. equi 4047 (FM204883) SEQ0523; Doubtful CDS
YP_002745051.1	Ortholog of S. equi 4047 (FM204883) SEQ0522
YP_002745052.1	Ortholog of S. equi 4047 (FM204883) SEQ0521
YP_002745053.1	Ortholog of S. equi 4047 (FM204883) SEQ0520
YP_002745054.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002745055.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002745056.1	Ortholog of S. equi 4047 (FM204883) SEQ0517
YP_002745057.1	Ortholog of S. equi 4047 (FM204883) SEQ0516
YP_002745058.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002745059.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002745060.1	Ortholog of S. equi 4047 (FM204883) SEQ0508
YP_002745061.1	Ortholog of S. equi 4047 (FM204883) SEQ0507
YP_002745062.1	Ortholog of S. equi 4047 (FM204883) SEQ0506
YP_002745063.1	Ortholog of S. equi 4047 (FM204883) SEQ0504
YP_002745064.1	Ortholog of S. equi 4047 (FM204883) SEQ0502
YP_002745065.1	Ortholog of S. equi 4047 (FM204883) SEQ0501
YP_002745066.1	Ortholog of S. equi 4047 (FM204883) SEQ0500
YP_002745067.1	Ortholog of S. equi 4047 (FM204883) SEQ0499
YP_002745068.1	Ortholog of S. equi 4047 (FM204883) SEQ0498
YP_002745069.1	Ortholog of S. equi 4047 (FM204883) SEQ0497
YP_002745070.1	Ortholog of S. equi 4047 (FM204883) SEQ0495
YP_002745071.1	Ortholog of S. equi 4047 (FM204883) SEQ0494
YP_002745072.1	Ortholog of S. equi 4047 (FM204883) SEQ0493
YP_002745073.1	Ortholog of S. equi 4047 (FM204883) SEQ0492
YP_002745074.1	Ortholog of S. equi 4047 (FM204883) SEQ0491
YP_002745075.1	Ortholog of S. equi 4047 (FM204883) SEQ0490
YP_002745076.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002745077.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus
YP_002745078.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_002745079.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002745080.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002745081.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002745082.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002745083.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002745084.1	Ortholog of S. equi 4047 (FM204883) SEQ0481
YP_002745085.1	Ortholog of S. equi 4047 (FM204883) SEQ0480
YP_002745086.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002745087.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002745088.1	Ortholog of S. equi 4047 (FM204883) SEQ0477
YP_002745089.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002745090.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002745091.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002745092.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002745093.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_002745094.1	Ortholog of S. equi 4047 (FM204883) SEQ0471
YP_002745095.1	Ortholog of S. equi 4047 (FM204883) SEQ0470
YP_002745096.1	Ortholog of S. equi 4047 (FM204883) SEQ0469
YP_002745097.1	Ortholog of S. equi 4047 (FM204883) SEQ0468
YP_002745098.1	ACT domain-containing protein
YP_002745099.1	Ortholog of S. equi 4047 (FM204883) SEQ0465
YP_002745100.1	Ortholog of S. equi 4047 (FM204883) SEQ0464
YP_002745101.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002745102.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002745103.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_002745104.1	Ortholog of S. equi 4047 (FM204883) SEQ0460
YP_002745105.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_002745106.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_002745107.1	Ortholog of S. equi 4047 (FM204883) SEQ0457
YP_002745108.1	Ortholog of S. equi 4047 (FM204883) SEQ0456
YP_002745109.1	Ortholog of S. equi 4047 (FM204883) SEQ0455
YP_002745110.1	Ortholog of S. equi 4047 (FM204883) SEQ0454
YP_002745111.1	Ortholog of S. equi 4047 (FM204883) SEQ0453
YP_002745112.1	Ortholog of S. equi 4047 (FM204883) SEQ0452
YP_002745113.1	Ortholog of S. equi 4047 (FM204883) SEQ0451
YP_002745114.1	Ortholog of S. equi 4047 (FM204883) SEQ0450
YP_002745115.1	Ortholog of S. equi 4047 (FM204883) SEQ0449
YP_002745116.1	Ortholog of S. equi 4047 (FM204883) SEQ0448
YP_002745117.1	Ortholog of S. equi 4047 (FM204883) SEQ0447
YP_002745118.1	Ortholog of S. equi 4047 (FM204883) SEQ0446
YP_002745119.1	Ortholog of S. equi 4047 (FM204883) SEQ0445
YP_002745120.1	Ortholog of S. equi 4047 (FM204883) SEQ0443
YP_002745121.1	Ortholog of S. equi 4047 (FM204883) SEQ0442
YP_002745122.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_002745123.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002745124.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002745125.1	Ortholog of S. equi 4047 (FM204883) SEQ0434
YP_002745126.1	Ortholog of S. equi 4047 (FM204883) SEQ0433
YP_002745127.1	Ortholog of S. equi 4047 (FM204883) SEQ0432
YP_002745128.1	Ortholog of S. equi 4047 (FM204883) SEQ0431
YP_002745129.1	Ortholog of S. equi 4047 (FM204883) SEQ0430
YP_002745130.1	Ortholog of S. equi 4047 (FM204883) SEQ0429
YP_002745133.1	Ortholog of S. equi 4047 (FM204883) SEQ1492; Ortholog of S. equi 4047 (FM204883) SEQ0424
YP_002745134.1	Ortholog of S. equi 4047 (FM204883) SEQ1491
YP_002745135.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002745136.1	Ortholog of S. equi 4047 (FM204883) SEQ0421
YP_002745137.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002745138.1	Ortholog of S. equi 4047 (FM204883) SEQ0418
YP_002745139.1	Ortholog of S. equi 4047 (FM204883) SEQ0417
YP_002745140.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002745141.1	Ortholog of S. equi 4047 (FM204883) SEQ0415
YP_002745142.1	Ortholog of S. equi 4047 (FM204883) SEQ0414
YP_002745143.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002745144.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002745145.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002745146.1	Ortholog of S. equi 4047 (FM204883) SEQ0406
YP_002745147.1	Ortholog of S. equi 4047 (FM204883) SEQ0404
YP_002745148.1	Ortholog of S. equi 4047 (FM204883) SEQ0404a
YP_002745149.1	Ortholog of S. equi 4047 (FM204883) SEQ0402
YP_002745150.1	Ortholog of S. equi 4047 (FM204883) SEQ0401
YP_002745151.1	Involved in disulfide oxidoreductase activity and electron transport
YP_002745152.1	Ortholog of S. equi 4047 (FM204883) SEQ0399
YP_002745153.1	Ortholog of S. equi 4047 (FM204883) SEQ0398
YP_002745154.1	Ortholog of S. equi 4047 (FM204883) SEQ0397
YP_002745155.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002745156.1	Ortholog of S. equi 4047 (FM204883) SEQ0395
YP_002745157.1	Ortholog of S. equi 4047 (FM204883) SEQ0394
YP_002745158.1	Ortholog of S. equi 4047 (FM204883) SEQ0393
YP_002745161.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002745162.1	Ortholog of S. equi 4047 (FM204883) SEQ0391
YP_002745163.1	Ortholog of S. equi 4047 (FM204883) SEQ0389
YP_002745164.1	Ortholog of S. equi 4047 (FM204883) SEQ0388
YP_002745165.1	Ortholog of S. equi 4047 (FM204883) SEQ0387
YP_002745166.1	Ortholog of S. equi 4047 (FM204883) SEQ0386
YP_002745167.1	Ortholog of S. equi 4047 (FM204883) SEQ0385
YP_002745168.1	Ortholog of S. equi 4047 (FM204883) SEQ0384
YP_002745169.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_002745170.1	Ortholog of S. equi 4047 (FM204883) SEQ0382
YP_002745172.1	Ortholog of S. equi 4047 (FM204883) SEQ0380
YP_002745173.1	Ortholog of S. equi 4047 (FM204883) SEQ0379
YP_002745174.1	Ortholog of S. equi 4047 (FM204883) SEQ0378
YP_002745175.1	Ortholog of S. equi 4047 (FM204883) SEQ0375
YP_002745176.1	Ortholog of S. equi 4047 (FM204883) SEQ0374
YP_002745177.1	Ortholog of S. equi 4047 (FM204883) SEQ0370
YP_002745178.1	Ortholog of S. equi 4047 (FM204883) SEQ0369
YP_002745179.1	Ortholog of S. equi 4047 (FM204883) SEQ0368
YP_002745180.1	Ortholog of S. equi 4047 (FM204883) SEQ0367
YP_002745181.1	3'-5' exonuclease of DNA polymerase III
YP_002745182.1	Ortholog of S. equi 4047 (FM204883) SEQ0365
YP_002745183.1	Ortholog of S. equi 4047 (FM204883) SEQ0364
YP_002745184.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_002745185.1	Ortholog of S. equi 4047 (FM204883) SEQ0362
YP_002745186.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002745187.1	Ortholog of S. equi 4047 (FM204883) SEQ0360
YP_002745188.1	Ortholog of S. equi 4047 (FM204883) SEQ0359
YP_002745189.1	Ortholog of S. equi 4047 (FM204883) SEQ0358
YP_002745190.1	Ortholog of S. equi 4047 (FM204883) SEQ0357
YP_002745191.1	Ortholog of S. equi 4047 (FM204883) SEQ0356
YP_002745192.1	Ortholog of S. equi 4047 (FM204883) SEQ0355
YP_002745193.1	Ortholog of S. equi 4047 (FM204883) SEQ0354
YP_002745194.1	Ortholog of S. equi 4047 (FM204883) SEQ0353
YP_002745195.1	Ortholog of S. equi 4047 (FM204883) SEQ0352
YP_002745196.1	Ortholog of S. equi 4047 (FM204883) SEQ0351
YP_002745197.1	Ortholog of S. equi 4047 (FM204883) SEQ0350
YP_002745198.1	Ortholog of S. equi 4047 (FM204883) SEQ0349
YP_002745199.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002745200.1	Ortholog of S. equi 4047 (FM204883) SEQ0345
YP_002745201.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002745202.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002745203.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002745204.1	Ortholog of S. equi 4047 (FM204883) SEQ0419
YP_002745205.1	Ortholog of S. equi 4047 (FM204883) SEQ0339
YP_002745206.1	Ortholog of S. equi 4047 (FM204883) SEQ0338
YP_002745207.1	Ortholog of S. equi 4047 (FM204883) SEQ0337
YP_002745208.1	Ortholog of S. equi 4047 (FM204883) SEQ0336
YP_002745209.1	Ortholog of S. equi 4047 (FM204883) SEQ0335
YP_002745210.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_002745211.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002745212.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002745213.1	Ortholog of S. equi 4047 (FM204883) SEQ0331
YP_002745214.1	Ortholog of S. equi 4047 (FM204883) SEQ0330
YP_002745215.1	Ortholog of S. equi 4047 (FM204883) SEQ0329
YP_002745217.1	Ortholog of S. equi 4047 (FM204883) SEQ0327
YP_002745218.1	Ortholog of S. equi 4047 (FM204883) SEQ0326
YP_002745219.1	Ortholog of S. equi 4047 (FM204883) SEQ0325
YP_002745220.1	Ortholog of S. equi 4047 (FM204883) SEQ0324
YP_002745221.1	Ortholog of S. equi 4047 (FM204883) SEQ0323
YP_002745222.1	Ortholog of S. equi 4047 (FM204883) SEQ0322
YP_002745223.1	Ortholog of S. equi 4047 (FM204883) SEQ0321
YP_002745224.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_002745225.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_002745226.1	Ortholog of S. equi 4047 (FM204883) SEQ0317
YP_002745227.1	Ortholog of S. equi 4047 (FM204883) SEQ0316
YP_002745228.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_002745229.1	Ortholog of S. equi 4047 (FM204883) SEQ0314
YP_002745230.1	Ortholog of S. equi 4047 (FM204883) SEQ0310
YP_002745231.1	Ortholog of S. equi 4047 (FM204883) SEQ0312
YP_002745238.1	Ortholog of S. equi 4047 (FM204883) SEQ1517
YP_002745239.1	Possible gene remnant. Similar to the C-terminal region of Listeria monocytogenes serotype 4b (strain F2365). Listeria monocytogenes serotype 4b (strain F2365) uncharacterized protein. uncharacterized protein. UniProt:Q724Y9 (EMBL:AE017262) (236 aa) fasta scores: E()=1.2e-07, 41.3% id in 75 aa
YP_002745240.1	Possible gene remnant. Similar to an internal region of Listeria monocytogenes serotype 4b (strain F2365). Listeria monocytogenes serotype 4b (strain F2365) uncharacterized protein. uncharacterized protein. UniProt:Q724Y9 (EMBL:AE017262) (236 aa) fasta scores: E()=3.1e-15, 62.5% id in 64 aa
YP_002745242.1	Ortholog of S. equi 4047 (FM204883) SEQ1510
YP_002745243.1	CDS is lacks similarity in the C-terminus in comparison to orthologues
YP_002745244.1	Ortholog of S. equi 4047 (FM204883) SEQ0306
YP_002745245.1	Ortholog of S. equi 4047 (FM204883) SEQ0305
YP_002745246.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_002745247.1	Ortholog of S. equi 4047 (FM204883) SEQ0303
YP_002745248.1	Ortholog of S. equi 4047 (FM204883) SEQ0302
YP_002745249.1	Ortholog of S. equi 4047 (FM204883) SEQ0301
YP_002745250.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002745251.1	Ortholog of S. equi 4047 (FM204883) SEQ0299
YP_002745252.1	Ortholog of S. equi 4047 (FM204883) SEQ0298
YP_002745253.1	Ortholog of S. equi 4047 (FM204883) SEQ0297
YP_002745254.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002745255.1	catalyzes the formation of dUMP from dUTP
YP_002745256.1	Ortholog of S. equi 4047 (FM204883) SEQ0294
YP_002745257.1	Ortholog of S. equi 4047 (FM204883) SEQ0293
YP_002745258.1	Ortholog of S. equi 4047 (FM204883) SEQ0292
YP_002745259.1	Ortholog of S. equi 4047 (FM204883) SEQ0291
YP_002745260.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002745261.1	Ortholog of S. equi 4047 (FM204883) SEQ0271
YP_002745263.1	Ortholog of S. equi 4047 (FM204883) SEQ0274
YP_002745264.1	Ortholog of S. equi 4047 (FM204883) SEQ0280
YP_002745266.1	Possible pseudogene containing internal deletion
YP_002745280.1	Ortholog of S. equi 4047 (FM204883) SEQ1980
YP_002745282.1	Ortholog of S. equi 4047 (FM204883) SEQ0753
YP_002745286.1	Ortholog of S. equi 4047 (FM204883) SEQ1257
YP_002745287.1	Ortholog of S. equi 4047 (FM204883) SEQ1258
YP_002745294.1	Ortholog of S. equi 4047 (FM204883) SEQ0808
YP_002745297.1	Ortholog of S. equi 4047 (FM204883) SEQ2028
YP_002745298.1	Ortholog of S. equi 4047 (FM204883) SEQ2029
YP_002745299.1	Ortholog of S. equi 4047 (FM204883) SEQ2030
YP_002745300.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_002745301.1	Ortholog of S. equi 4047 (FM204883) SEQ2032
YP_002745302.1	Ortholog of S. equi 4047 (FM204883) SEQ2097
YP_002745303.1	Ortholog of S. equi 4047 (FM204883) SEQ2098
YP_002745304.1	Ortholog of S. equi 4047 (FM204883) SEQ2099
YP_002745305.1	Ortholog of S. equi 4047 (FM204883) SEQ2100
YP_002745307.1	Ortholog of S. equi 4047 (FM204883) SEQ2102
YP_002745308.1	Ortholog of S. equi 4047 (FM204883) SEQ2103
YP_002745310.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_002745311.1	similar to transaldolase from Escherichia coli; many organisms have multiple copies
YP_002745312.1	Ortholog of S. equi 4047 (FM204883) SEQ2106
YP_002745313.1	Ortholog of S. equi 4047 (FM204883) SEQ2107
YP_002745314.1	Ortholog of S. equi 4047 (FM204883) SEQ2108
YP_002745315.1	Ortholog of S. equi 4047 (FM204883) SEQ2109
YP_002745316.1	Ortholog of S. equi 4047 (FM204883) SEQ2110
YP_002745317.1	Ortholog of S. equi 4047 (FM204883) SEQ2111
YP_002745318.1	Ortholog of S. equi 4047 (FM204883) SEQ2112
YP_002745319.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002745320.1	Ortholog of S. equi 4047 (FM204883) SEQ2114
YP_002745321.1	Ortholog of S. equi 4047 (FM204883) SEQ2115
YP_002745329.1	Ortholog of S. equi 4047 (FM204883) SEQ2119
YP_002745330.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_002745331.1	Ortholog of S. equi 4047 (FM204883) SEQ2121
YP_002745332.1	Ortholog of S. equi 4047 (FM204883) SEQ2122
YP_002745333.1	Ortholog of S. equi 4047 (FM204883) SEQ2124
YP_002745334.1	Ortholog of S. equi 4047 (FM204883) SEQ2125
YP_002745335.1	Ortholog of S. equi 4047 (FM204883) SEQ2126
YP_002745336.1	Ortholog of S. equi 4047 (FM204883) SEQ2127
YP_002745337.1	Ortholog of S. equi 4047 (FM204883) SEQ2128
YP_002745338.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002745339.1	Ortholog of S. equi 4047 (FM204883) SEQ2130
YP_002745340.1	Ortholog of S. equi 4047 (FM204883) SEQ2131
YP_002745341.1	Ortholog of S. equi 4047 (FM204883) SEQ2132
YP_002745342.1	Ortholog of S. equi 4047 (FM204883) SEQ2133
YP_002745343.1	Ortholog of S. equi 4047 (FM204883) SEQ2134
YP_002745344.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002745345.1	Ortholog of S. equi 4047 (FM204883) SEQ2136
YP_002745346.1	Ortholog of S. equi 4047 (FM204883) SEQ2137
YP_002745347.1	Ortholog of S. equi 4047 (FM204883) SEQ2138
YP_002745348.1	Ortholog of S. equi 4047 (FM204883) SEQ2140
YP_002745349.1	Ortholog of S. equi 4047 (FM204883) SEQ2141
YP_002745350.1	Ortholog of S. equi 4047 (FM204883) SEQ2142
YP_002745351.1	Ortholog of S. equi 4047 (FM204883) SEQ2143
YP_002745352.1	Ortholog of S. equi 4047 (FM204883) SEQ2144
YP_002745353.1	Ortholog of S. equi 4047 (FM204883) SEQ2145
YP_002745354.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002745355.1	Ortholog of S. equi 4047 (FM204883) SEQ2147
YP_002745356.1	Ortholog of S. equi 4047 (FM204883) SEQ2148
YP_002745357.1	Ortholog of S. equi 4047 (FM204883) SEQ2149
YP_002745358.1	Ortholog of S. equi 4047 (FM204883) SEQ2150
YP_002745359.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002745360.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002745361.1	Ortholog of S. equi 4047 (FM204883) SEQ2153
YP_002745362.1	Ortholog of S. equi 4047 (FM204883) SEQ2154
YP_002745363.1	Ortholog of S. equi 4047 (FM204883) SEQ2155
YP_002745364.1	Ortholog of S. equi 4047 (FM204883) SEQ2156
YP_002745365.1	Ortholog of S. equi 4047 (FM204883) SEQ2157
YP_002745366.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002745367.1	Ortholog of S. equi 4047 (FM204883) SEQ2159
YP_002745368.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_002745369.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002745370.1	Ortholog of S. equi 4047 (FM204883) SEQ2162
YP_002745371.1	Ortholog of S. equi 4047 (FM204883) SEQ2163
YP_002745372.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002745373.1	Ortholog of S. equi 4047 (FM204883) SEQ2165
YP_002745374.1	Ortholog of S. equi 4047 (FM204883) SEQ2166
YP_002745375.1	Ortholog of S. equi 4047 (FM204883) SEQ2167
YP_002745376.1	Ortholog of S. equi 4047 (FM204883) SEQ2168
YP_002745377.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002745378.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002745379.1	Ortholog of S. equi 4047 (FM204883) SEQ2175
YP_002745380.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002745381.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002745382.1	Ortholog of S. equi 4047 (FM204883) SEQ2178
YP_002745383.1	Ortholog of S. equi 4047 (FM204883) SEQ2179
YP_002745384.1	Ortholog of S. equi 4047 (FM204883) SEQ2180
YP_002745385.1	Ortholog of S. equi 4047 (FM204883) SEQ2181
YP_002745386.1	Ortholog of S. equi 4047 (FM204883) SEQ2182
YP_002745387.1	Ortholog of S. equi 4047 (FM204883) SEQ2183
YP_002745388.1	Ortholog of S. equi 4047 (FM204883) SEQ2184
YP_002745389.1	Ortholog of S. equi 4047 (FM204883) SEQ2188
YP_002745390.1	Ortholog of S. equi 4047 (FM204883) SEQ2189
YP_002745391.1	Ortholog of S. equi 4047 (FM204883) SEQ2191
YP_002745392.1	Ortholog of S. equi 4047 (FM204883) SEQ2192
YP_002745393.1	Ortholog of S. equi 4047 (FM204883) SEQ2196
YP_002745394.1	Ortholog of S. equi 4047 (FM204883) SEQ2197
YP_002745395.1	Ortholog of S. equi 4047 (FM204883) SEQ2198
YP_002745396.1	Ortholog of S. equi 4047 (FM204883) SEQ2199
YP_002745397.1	Ortholog of S. equi 4047 (FM204883) SEQ2200
YP_002745398.1	Ortholog of S. equi 4047 (FM204883) SEQ1971
YP_002745399.1	Ortholog of S. equi 4047 (FM204883) SEQ1972
YP_002745400.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002745401.1	Ortholog of S. equi 4047 (FM204883) SEQ2202
YP_002745402.1	unwinds double stranded DNA
YP_002745403.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002745404.1	Ortholog of S. equi 4047 (FM204883) SEQ2205
YP_002745405.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002745406.1	Ortholog of S. equi 4047 (FM204883) SEQ2207
YP_002745407.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002745408.1	Ortholog of S. equi 4047 (FM204883) SEQ2209
YP_002745409.1	Ortholog of S. equi 4047 (FM204883) SEQ2210
YP_002745410.1	Ortholog of S. equi 4047 (FM204883) SEQ2211
YP_002745411.1	Ortholog of S. equi 4047 (FM204883) SEQ2212
YP_002745412.1	Ortholog of S. equi 4047 (FM204883) SEQ2213
YP_002745413.1	with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene
YP_002745414.1	with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene
YP_002745415.1	Ortholog of S. equi 4047 (FM204883) SEQ2216
YP_002745416.1	Ortholog of S. equi 4047 (FM204883) SEQ2217
YP_002745417.1	Ortholog of S. equi 4047 (FM204883) SEQ2218
YP_002745418.1	Ortholog of S. equi 4047 (FM204883) SEQ2219
YP_002745419.1	Ortholog of S. equi 4047 (FM204883) SEQ2220
YP_002745420.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_002745421.1	Ortholog of S. equi 4047 (FM204883) SEQ2222
YP_002745422.1	Ortholog of S. equi 4047 (FM204883) SEQ2223
YP_002745424.1	Ortholog of S. equi 4047 (FM204883) SEQ2228
YP_002745425.1	Ortholog of S. equi 4047 (FM204883) SEQ2227
YP_002745427.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002745428.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002745429.1	Ortholog of S. equi 4047 (FM204883) SEQ2232
YP_002745430.1	Ortholog of S. equi 4047 (FM204883) SEQ2233
YP_002745431.1	Ortholog of S. equi 4047 (FM204883) SEQ2234
YP_002745432.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002745433.1	Ortholog of S. equi 4047 (FM204883) SEQ2237
YP_002745434.1	Ortholog of S. equi 4047 (FM204883) SEQ2238