-- dump date 20140620_082208 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001449323.1 157149691 5599800 166..1518 1 NC_009785.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1518 dnaA 5599800 dnaA Streptococcus gordonii str. Challis substr. CH1 chromosomal replication initiation protein YP_001449323.1 166 D 467705 CDS YP_001449324.1 157151517 5598169 1674..2810 1 NC_009785.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2810 dnaN 5598169 dnaN Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III subunit beta YP_001449324.1 1674 D 467705 CDS YP_001449325.1 157151188 5599770 2810..3013 1 NC_009785.1 identified by match to protein family HMM PF06107; hypothetical protein 3013 5599770 SGO_0003 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449325.1 2810 D 467705 CDS YP_001449326.1 157150252 5597802 complement(3023..3541) 1 NC_009785.1 identified by match to protein family HMM PF06998; putative lipoprotein 3541 5597802 SGO_0004 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449326.1 3023 R 467705 CDS YP_001449327.1 157150786 5598735 complement(3582..6176) 1 NC_009785.1 hypothetical protein 6176 5598735 SGO_0005 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449327.1 3582 R 467705 CDS YP_001449328.1 157150583 5598596 complement(6216..7838) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 7838 5598596 SGO_0006 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449328.1 6216 R 467705 CDS YP_001449329.1 157150103 5598950 8068..9090 1 NC_009785.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 9090 trpS 5598950 trpS Streptococcus gordonii str. Challis substr. CH1 tryptophanyl-tRNA synthetase II YP_001449329.1 8068 D 467705 CDS YP_001449330.1 157150588 5598251 9195..10676 1 NC_009785.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 10676 5598251 SGO_0008 Streptococcus gordonii str. Challis substr. CH1 inosine 5'-monophosphate dehydrogenase YP_001449330.1 9195 D 467705 CDS YP_001449331.1 157149944 5598943 complement(10780..11865) 1 NC_009785.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 11865 recF 5598943 recF Streptococcus gordonii str. Challis substr. CH1 recombination protein F YP_001449331.1 10780 R 467705 CDS YP_001449332.1 157151552 5598828 complement(11867..12259) 1 NC_009785.1 identified by match to protein family HMM TIGR02988; hypothetical protein 12259 5598828 SGO_0010 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449332.1 11867 R 467705 CDS YP_001449333.1 157150999 5599686 12414..13661 1 NC_009785.1 identified by match to protein family HMM PF05193; M16 family proteinase 13661 5599686 SGO_0011 Streptococcus gordonii str. Challis substr. CH1 M16 family proteinase YP_001449333.1 12414 D 467705 CDS YP_001449334.1 157150891 5598171 13661..14956 1 NC_009785.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 14956 mpp 5598171 mpp Streptococcus gordonii str. Challis substr. CH1 M16 family peptidase YP_001449334.1 13661 D 467705 CDS YP_001449335.1 157150301 5598389 15203..16033 1 NC_009785.1 hypothetical protein 16033 5598389 SGO_0013 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449335.1 15203 D 467705 CDS YP_001449336.1 157150093 5599470 16042..16581 1 NC_009785.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 16581 pgsA 5599470 pgsA Streptococcus gordonii str. Challis substr. CH1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001449336.1 16042 D 467705 CDS YP_001449337.1 157150917 5597965 16585..17409 1 NC_009785.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 17409 cbiO 5597965 cbiO Streptococcus gordonii str. Challis substr. CH1 cobalt transporter ATP-binding subunit YP_001449337.1 16585 D 467705 CDS YP_001449338.1 157150162 5598333 17394..18233 1 NC_009785.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 18233 cbiO 5598333 cbiO Streptococcus gordonii str. Challis substr. CH1 cobalt transporter ATP-binding subunit YP_001449338.1 17394 D 467705 CDS YP_001449339.1 157150603 5599501 18226..19020 1 NC_009785.1 identified by match to protein family HMM PF02361; ABC-type putative cobalt transport system, permease 19020 5599501 SGO_0017 Streptococcus gordonii str. Challis substr. CH1 ABC-type putative cobalt transport system, permease YP_001449339.1 18226 D 467705 CDS YP_001449340.1 157151203 5598921 19222..19836 1 NC_009785.1 identified by match to protein family HMM PF01476; match to protein family HMM PF06737; hypothetical protein 19836 5598921 SGO_0018 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449340.1 19222 D 467705 CDS YP_001449341.1 157150581 5597769 complement(19913..20785) 1 NC_009785.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 20785 sdhA 5597769 sdhA Streptococcus gordonii str. Challis substr. CH1 L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_001449341.1 19913 R 467705 CDS YP_001449342.1 157151322 5598952 complement(20794..21465) 1 NC_009785.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 21465 sdhB 5598952 sdhB Streptococcus gordonii str. Challis substr. CH1 L-serine dehydratase, iron-sulfur-dependent subunit beta YP_001449342.1 20794 R 467705 CDS YP_001449343.1 157150750 5599306 21791..22354 1 NC_009785.1 identified by match to protein family HMM PF01476; hypothetical protein 22354 5599306 SGO_0021 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449343.1 21791 D 467705 CDS YP_001449344.1 157150902 5598654 22565..23686 1 NC_009785.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 23686 mnmA 5598654 mnmA Streptococcus gordonii str. Challis substr. CH1 tRNA-specific 2-thiouridylase MnmA YP_001449344.1 22565 D 467705 CDS YP_001449345.1 157150287 5598368 23706..24320 1 NC_009785.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 24320 5598368 SGO_0023 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449345.1 23706 D 467705 CDS YP_001449346.1 157150700 5599487 24391..24486 1 NC_009785.1 hypothetical protein 24486 5599487 SGO_0024 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449346.1 24391 D 467705 CDS YP_001449347.1 157149984 5598741 24467..26386 1 NC_009785.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 26386 gidA 5598741 gidA Streptococcus gordonii str. Challis substr. CH1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001449347.1 24467 D 467705 CDS YP_001449348.1 157150426 5598974 26728..28707 1 NC_009785.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 28707 5598974 SGO_0026 Streptococcus gordonii str. Challis substr. CH1 DHH subfamily 1 protein YP_001449348.1 26728 D 467705 CDS YP_001449349.1 157150251 5599244 28704..29156 1 NC_009785.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 29156 rplI 5599244 rplI Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L9 YP_001449349.1 28704 D 467705 CDS YP_001449350.1 157149685 5599010 29183..30538 1 NC_009785.1 unwinds double stranded DNA; replicative DNA helicase 30538 dnaC 5599010 dnaC Streptococcus gordonii str. Challis substr. CH1 replicative DNA helicase YP_001449350.1 29183 D 467705 CDS YP_001449351.1 157151155 5598242 30540..30830 1 NC_009785.1 identified by match to protein family HMM PF06257; hypothetical protein 30830 5598242 SGO_0029 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449351.1 30540 D 467705 CDS YP_001449352.1 157150580 5597856 30955..32142 1 NC_009785.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; aromatic amino acid aminotransferase 32142 aspB 5597856 aspB Streptococcus gordonii str. Challis substr. CH1 aromatic amino acid aminotransferase YP_001449352.1 30955 D 467705 CDS YP_001449353.1 157150562 5598954 32120..32902 1 NC_009785.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 32902 recO 5598954 recO Streptococcus gordonii str. Challis substr. CH1 DNA repair protein RecO YP_001449353.1 32120 D 467705 CDS YP_001449354.1 157150072 5598993 32899..33900 1 NC_009785.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 33900 plsX 5598993 plsX Streptococcus gordonii str. Challis substr. CH1 putative glycerol-3-phosphate acyltransferase PlsX YP_001449354.1 32899 D 467705 CDS YP_001449355.1 157151465 5598340 33897..34136 1 NC_009785.1 identified by match to protein family HMM PF00550; acyl carrier protein 34136 acpP 5598340 acpP Streptococcus gordonii str. Challis substr. CH1 acyl carrier protein YP_001449355.1 33897 D 467705 CDS YP_001449356.1 157151026 5598377 34289..34996 1 NC_009785.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 34996 purC 5598377 purC Streptococcus gordonii str. Challis substr. CH1 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001449356.1 34289 D 467705 CDS YP_001449357.1 157151635 5598097 35015..38758 1 NC_009785.1 identified by match to protein family HMM PF01965; match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 38758 5598097 SGO_0035 Streptococcus gordonii str. Challis substr. CH1 phosphoribosylformylglycinamidine synthase YP_001449357.1 35015 D 467705 CDS YP_001449358.1 157150020 5599273 38842..40284 1 NC_009785.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 40284 purF 5599273 purF Streptococcus gordonii str. Challis substr. CH1 amidophosphoribosyltransferase YP_001449358.1 38842 D 467705 CDS YP_001449359.1 157150745 5599227 40327..41349 1 NC_009785.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 41349 purM 5599227 purM Streptococcus gordonii str. Challis substr. CH1 phosphoribosylaminoimidazole synthetase YP_001449359.1 40327 D 467705 CDS YP_001449360.1 157149802 5598667 41346..41897 1 NC_009785.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 41897 purN 5598667 purN Streptococcus gordonii str. Challis substr. CH1 phosphoribosylglycinamide formyltransferase YP_001449360.1 41346 D 467705 CDS YP_001449361.1 157150257 5599875 41910..42608 1 NC_009785.1 hypothetical protein 42608 5599875 SGO_0039 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449361.1 41910 D 467705 CDS YP_001449362.1 157151031 5599066 42605..44152 1 NC_009785.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 44152 purH 5599066 purH Streptococcus gordonii str. Challis substr. CH1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001449362.1 42605 D 467705 CDS YP_001449363.1 157150111 5598084 44149..44250 1 NC_009785.1 hypothetical protein 44250 5598084 SGO_0041 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449363.1 44149 D 467705 CDS YP_001449364.1 157150570 5598114 complement(44481..45197) 1 NC_009785.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 45197 5598114 SGO_0042 Streptococcus gordonii str. Challis substr. CH1 GntR family transcriptional regulator YP_001449364.1 44481 R 467705 CDS YP_001449365.1 157149977 5598978 45352..47130 1 NC_009785.1 identified by match to protein family HMM PF01301; match to protein family HMM PF02449; beta-galactosidase 47130 5598978 SGO_0043 Streptococcus gordonii str. Challis substr. CH1 beta-galactosidase YP_001449365.1 45352 D 467705 CDS YP_001449366.1 157150435 5597880 47127..47603 1 NC_009785.1 identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 47603 5597880 SGO_0044 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIB YP_001449366.1 47127 D 467705 CDS YP_001449367.1 157149804 5599232 47630..48544 1 NC_009785.1 identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 48544 5599232 SGO_0045 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIC YP_001449367.1 47630 D 467705 CDS YP_001449368.1 157150193 5598421 48531..49352 1 NC_009785.1 identified by match to protein family HMM PF03613; PTS system transporter subunit IID 49352 5598421 SGO_0046 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IID YP_001449368.1 48531 D 467705 CDS YP_001449369.1 157151209 5598304 49364..49771 1 NC_009785.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 49771 5598304 SGO_0047 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIA YP_001449369.1 49364 D 467705 CDS YP_001449370.1 157150602 5597760 49923..51086 1 NC_009785.1 identified by match to protein family HMM PF01380; tagatose-6-phosphate ketose/aldose isomerase 51086 5597760 SGO_0048 Streptococcus gordonii str. Challis substr. CH1 tagatose-6-phosphate ketose/aldose isomerase YP_001449370.1 49923 D 467705 CDS YP_001449371.1 157151054 5598923 51312..52346 1 NC_009785.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 52346 galM 5598923 galM Streptococcus gordonii str. Challis substr. CH1 aldose 1-epimerase YP_001449371.1 51312 D 467705 CDS YP_001449372.1 157150899 5598042 complement(52440..53453) 1 NC_009785.1 hypothetical protein 53453 5598042 SGO_0050 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449372.1 52440 R 467705 CDS YP_001449373.1 157151351 5598376 complement(53446..54024) 1 NC_009785.1 hypothetical protein 54024 5598376 SGO_0051 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449373.1 53446 R 467705 CDS YP_001449374.1 157151306 5599832 complement(54011..54340) 1 NC_009785.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 54340 5599832 SGO_0052 Streptococcus gordonii str. Challis substr. CH1 PadR family transcriptional regulator YP_001449374.1 54011 R 467705 CDS YP_001449375.1 157149823 5599527 54550..54681 1 NC_009785.1 hypothetical protein 54681 5599527 SGO_0053 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449375.1 54550 D 467705 CDS YP_001449376.1 157150658 5598513 54712..56250 1 NC_009785.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 56250 dltA 5598513 dltA Streptococcus gordonii str. Challis substr. CH1 D-alanine--poly(phosphoribitol) ligase subunit 1 YP_001449376.1 54712 D 467705 CDS YP_001449377.1 157150049 5598826 56247..57494 1 NC_009785.1 identified by match to protein family HMM PF03062; integral membrane protein 57494 dltB 5598826 dltB Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001449377.1 56247 D 467705 CDS YP_001449378.1 157150792 5599230 57515..57754 1 NC_009785.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 57754 dltC 5599230 dltC Streptococcus gordonii str. Challis substr. CH1 D-alanine--poly(phosphoribitol) ligase subunit 2 YP_001449378.1 57515 D 467705 CDS YP_001449379.1 157150190 5598586 57747..59015 1 NC_009785.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; dltD protein 59015 5598586 SGO_0057 Streptococcus gordonii str. Challis substr. CH1 dltD protein YP_001449379.1 57747 D 467705 CDS YP_001449380.1 157150009 5598458 59125..59610 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 59610 5598458 SGO_0058 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449380.1 59125 D 467705 CDS YP_001449381.1 157150474 5598105 59937..60224 1 NC_009785.1 identified by match to protein family HMM PF06013; hypothetical protein 60224 pXO1 5598105 pXO1 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449381.1 59937 D 467705 CDS YP_001449382.1 157150930 5599161 60303..63317 1 NC_009785.1 hypothetical protein 63317 5599161 SGO_0060 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449382.1 60303 D 467705 CDS YP_001449383.1 157151388 5598314 63324..63779 1 NC_009785.1 hypothetical protein 63779 5598314 SGO_0061 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449383.1 63324 D 467705 CDS YP_001449384.1 157150633 5598270 63853..64101 1 NC_009785.1 hypothetical protein 64101 5598270 SGO_0062 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449384.1 63853 D 467705 CDS YP_001449385.1 157150151 5598865 64094..65347 1 NC_009785.1 hypothetical protein 65347 5598865 SGO_0063 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449385.1 64094 D 467705 CDS YP_001449386.1 157150026 5599876 65367..69785 1 NC_009785.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 69785 5599876 SGO_0064 Streptococcus gordonii str. Challis substr. CH1 FtsK/SpoIIIE family protein YP_001449386.1 65367 D 467705 CDS YP_001449387.1 157151627 5599810 69785..70882 1 NC_009785.1 hypothetical protein 70882 5599810 SGO_0065 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449387.1 69785 D 467705 CDS YP_001449388.1 157150484 5599645 70894..71199 1 NC_009785.1 D-3-phosphoglycerate dehydrogenase 71199 5599645 SGO_0066 Streptococcus gordonii str. Challis substr. CH1 D-3-phosphoglycerate dehydrogenase YP_001449388.1 70894 D 467705 CDS YP_001449389.1 157150689 5599139 71229..72653 1 NC_009785.1 prophage function domain-containing protein 72653 5599139 SGO_0067 Streptococcus gordonii str. Challis substr. CH1 prophage function domain-containing protein YP_001449389.1 71229 D 467705 CDS YP_001449390.1 157150370 5598766 72650..73183 1 NC_009785.1 putative lipoprotein 73183 5598766 SGO_0068 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449390.1 72650 D 467705 CDS YP_001449391.1 157150168 5599364 73192..73746 1 NC_009785.1 hypothetical protein 73746 5599364 SGO_0069 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449391.1 73192 D 467705 CDS YP_001449392.1 157151288 5599260 73756..74160 1 NC_009785.1 merozoite surface protein 1 74160 5599260 SGO_0070 Streptococcus gordonii str. Challis substr. CH1 merozoite surface protein 1 YP_001449392.1 73756 D 467705 CDS YP_001449393.1 157151082 5599063 74387..74644 1 NC_009785.1 putative phage protein-like protein 74644 5599063 SGO_0071 Streptococcus gordonii str. Challis substr. CH1 putative phage protein-like protein YP_001449393.1 74387 D 467705 CDS YP_001449394.1 157151699 5597983 74650..75537 1 NC_009785.1 hypothetical protein 75537 5597983 SGO_0072 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449394.1 74650 D 467705 CDS YP_001449395.1 157150804 5599082 75530..75847 1 NC_009785.1 hypothetical protein 75847 5599082 SGO_0073 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449395.1 75530 D 467705 CDS YP_001449396.1 157151242 5598555 76324..77568 1 NC_009785.1 hypothetical protein 77568 5598555 SGO_0074 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449396.1 76324 D 467705 CDS YP_001449397.1 157149865 5599676 77592..78344 1 NC_009785.1 hypothetical protein 78344 5599676 SGO_0075 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449397.1 77592 D 467705 CDS YP_001449398.1 157150326 5599841 78636..79043 1 NC_009785.1 hypothetical protein 79043 5599841 SGO_0076 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449398.1 78636 D 467705 CDS YP_001449399.1 157150263 5599431 79329..79541 1 NC_009785.1 hypothetical protein 79541 5599431 SGO_0077 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449399.1 79329 D 467705 CDS YP_001449400.1 157151146 5599581 81145..81807 1 NC_009785.1 hypothetical protein 81807 5599581 SGO_0078 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449400.1 81145 D 467705 CDS YP_001449401.1 157151470 5597868 81809..82279 1 NC_009785.1 hypothetical protein 82279 5597868 SGO_0079 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449401.1 81809 D 467705 CDS YP_001449402.1 157150135 5598204 82287..83987 1 NC_009785.1 hypothetical protein 83987 5598204 SGO_0080 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449402.1 82287 D 467705 CDS YP_001449403.1 157149698 5599415 84002..84658 1 NC_009785.1 hypothetical protein 84658 5599415 SGO_0081 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449403.1 84002 D 467705 CDS YP_001449404.1 157150309 5598091 84655..84969 1 NC_009785.1 hypothetical protein 84969 5598091 SGO_0082 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449404.1 84655 D 467705 CDS YP_001449405.1 157150416 5599458 complement(85210..86037) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 86037 5599458 SGO_0083 Streptococcus gordonii str. Challis substr. CH1 HAD superfamily hydrolase YP_001449405.1 85210 R 467705 CDS YP_001449406.1 157151077 5599265 85972..86073 1 NC_009785.1 hypothetical protein 86073 5599265 SGO_0084 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449406.1 85972 D 467705 CDS YP_001449407.1 157151541 5597990 complement(86070..86816) 1 NC_009785.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 86816 5597990 SGO_0085 Streptococcus gordonii str. Challis substr. CH1 DeoR family transcriptional regulator YP_001449407.1 86070 R 467705 CDS YP_001449408.1 157150040 5599250 complement(86984..87391) 1 NC_009785.1 putative lipoprotein 87391 5599250 SGO_0086 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449408.1 86984 R 467705 CDS YP_001449409.1 157149696 5599325 complement(87704..88870) 1 NC_009785.1 identified by match to protein family HMM PF07690; major facilitator transporter 88870 5599325 SGO_0087 Streptococcus gordonii str. Challis substr. CH1 major facilitator transporter YP_001449409.1 87704 R 467705 CDS YP_001449410.1 157150436 5598099 complement(88917..89438) 1 NC_009785.1 identified by match to protein family HMM PF00440; AraC family transcriptional regulator 89438 5598099 SGO_0088 Streptococcus gordonii str. Challis substr. CH1 AraC family transcriptional regulator YP_001449410.1 88917 R 467705 CDS YP_001449411.1 157150909 5599231 89598..90452 1 NC_009785.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein 90452 5599231 SGO_0089 Streptococcus gordonii str. Challis substr. CH1 cation efflux system protein YP_001449411.1 89598 D 467705 CDS YP_001449412.1 157150992 5598352 complement(90480..91010) 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 91010 5598352 SGO_0090 Streptococcus gordonii str. Challis substr. CH1 TetR family transcriptional regulator YP_001449412.1 90480 R 467705 CDS YP_001449413.1 157151578 5598191 91144..93567 1 NC_009785.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; integral membrane protein 93567 5598191 SGO_0091 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001449413.1 91144 D 467705 CDS YP_001449414.1 157149721 5599688 93748..94485 1 NC_009785.1 hypothetical protein 94485 5599688 SGO_0092 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449414.1 93748 D 467705 CDS YP_001449415.1 157150250 5598684 94466..95146 1 NC_009785.1 hypothetical protein 95146 5598684 SGO_0093 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449415.1 94466 D 467705 CDS YP_001449416.1 157150727 5598761 95169..96431 1 NC_009785.1 putative lipoprotein 96431 5598761 SGO_0094 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449416.1 95169 D 467705 CDS YP_001449417.1 157150919 5598698 complement(96499..97452) 1 NC_009785.1 identified by match to protein family HMM PF02016; microcin immunity protein MccF 97452 mccF 5598698 mccF Streptococcus gordonii str. Challis substr. CH1 microcin immunity protein MccF YP_001449417.1 96499 R 467705 CDS YP_001449418.1 157150512 5598330 complement(97516..98148) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; hypothetical protein 98148 5598330 SGO_0096 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449418.1 97516 R 467705 CDS YP_001449419.1 157150052 5599088 98442..98951 1 NC_009785.1 hypothetical protein 98951 5599088 SGO_0097 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449419.1 98442 D 467705 CDS YP_001449420.1 157151680 5599757 99028..99486 1 NC_009785.1 identified by match to protein family HMM PF07972; ribonucleotide reductase-like protein 99486 5599757 SGO_0098 Streptococcus gordonii str. Challis substr. CH1 ribonucleotide reductase-like protein YP_001449420.1 99028 D 467705 CDS YP_001449421.1 157151248 5598862 complement(99545..101638) 1 NC_009785.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 101638 pulA-2 5598862 pulA-2 Streptococcus gordonii str. Challis substr. CH1 pullulanase YP_001449421.1 99545 R 467705 CDS YP_001449422.1 157150794 5597765 complement(101873..102859) 1 NC_009785.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; maltose operon transcription repressor 102859 5597765 SGO_0100 Streptococcus gordonii str. Challis substr. CH1 maltose operon transcription repressor YP_001449422.1 101873 R 467705 CDS YP_001449423.1 157150471 5598584 complement(102869..103672) 1 NC_009785.1 maltodextrose utilization protein malA 103672 malA 5598584 malA Streptococcus gordonii str. Challis substr. CH1 maltodextrose utilization protein malA YP_001449423.1 102869 R 467705 CDS YP_001449424.1 157150429 5599166 complement(103727..104569) 1 NC_009785.1 identified by match to protein family HMM PF00528; maltodextrin transport system permease malD 104569 5599166 SGO_0102 Streptococcus gordonii str. Challis substr. CH1 maltodextrin transport system permease malD YP_001449424.1 103727 R 467705 CDS YP_001449425.1 157151677 5599239 complement(104571..105866) 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154; maltodextrin transport system permease malC 105866 5599239 SGO_0103 Streptococcus gordonii str. Challis substr. CH1 maltodextrin transport system permease malC YP_001449425.1 104571 R 467705 CDS YP_001449426.1 157151116 5598409 complement(106043..107308) 1 NC_009785.1 identified by match to protein family HMM PF01547; maltose/maltodextrin-binding protein 107308 5598409 SGO_0104 Streptococcus gordonii str. Challis substr. CH1 maltose/maltodextrin-binding protein YP_001449426.1 106043 R 467705 CDS YP_001449427.1 157150213 5597919 107633..109183 1 NC_009785.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 109183 malQ 5597919 malQ Streptococcus gordonii str. Challis substr. CH1 4-alpha-glucanotransferase YP_001449427.1 107633 D 467705 CDS YP_001449428.1 157149840 5598856 109176..111437 1 NC_009785.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase 111437 glgP-2 5598856 glgP-2 Streptococcus gordonii str. Challis substr. CH1 maltodextrin phosphorylase YP_001449428.1 109176 D 467705 CDS YP_001449429.1 157151122 5597882 111776..114952 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 114952 5597882 SGO_0107 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001449429.1 111776 D 467705 CDS YP_001449430.1 157150805 5597912 115064..116062 1 NC_009785.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 116062 ruvB 5597912 ruvB Streptococcus gordonii str. Challis substr. CH1 Holliday junction DNA helicase RuvB YP_001449430.1 115064 D 467705 CDS YP_001449431.1 157151528 5598554 116067..116645 1 NC_009785.1 identified by match to protein family HMM PF06042; hypothetical protein 116645 5598554 SGO_0109 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449431.1 116067 D 467705 CDS YP_001449432.1 157151069 5599073 116893..117315 1 NC_009785.1 identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase 117315 5599073 SGO_0110 Streptococcus gordonii str. Challis substr. CH1 phosphotyrosine protein phosphatase YP_001449432.1 116893 D 467705 CDS YP_001449433.1 157151514 5598014 117318..117731 1 NC_009785.1 identified by match to protein family HMM PF02493; MORN motif-containing protein 117731 5598014 SGO_0111 Streptococcus gordonii str. Challis substr. CH1 MORN motif-containing protein YP_001449433.1 117318 D 467705 CDS YP_001449434.1 157151084 5599021 117721..119535 1 NC_009785.1 identified by match to protein family HMM PF01757; putative acyltransferase 119535 5599021 SGO_0112 Streptococcus gordonii str. Challis substr. CH1 putative acyltransferase YP_001449434.1 117721 D 467705 CDS YP_001449435.1 157150332 5597976 119851..122502 1 NC_009785.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 122502 acdH 5597976 acdH Streptococcus gordonii str. Challis substr. CH1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001449435.1 119851 D 467705 CDS YP_001449436.1 157149834 5599422 122898..123440 1 NC_009785.1 hypothetical protein 123440 5599422 SGO_0114 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449436.1 122898 D 467705 CDS YP_001449437.1 157150706 5598140 complement(123654..123815) 1 NC_009785.1 bacteriocin 123815 sthB 5598140 sthB Streptococcus gordonii str. Challis substr. CH1 bacteriocin YP_001449437.1 123654 R 467705 CDS YP_001449438.1 157149976 5598729 complement(123957..124130) 1 NC_009785.1 identified by match to protein family HMM TIGR01847; bacteriocin 124130 sthA 5598729 sthA Streptococcus gordonii str. Challis substr. CH1 bacteriocin YP_001449438.1 123957 R 467705 CDS YP_001449439.1 157151190 5597893 124235..124402 1 NC_009785.1 hypothetical protein 124402 5597893 SGO_0117 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449439.1 124235 D 467705 CDS YP_001449440.1 157151607 5597796 124700..125401 1 NC_009785.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 125401 5597796 SGO_0118 Streptococcus gordonii str. Challis substr. CH1 N-acetylmannosamine-6-phosphate 2-epimerase YP_001449440.1 124700 D 467705 CDS YP_001449441.1 157149778 5599691 125440..125892 1 NC_009785.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 125892 5599691 SGO_0119 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449441.1 125440 D 467705 CDS YP_001449442.1 157150379 5598744 125910..127262 1 NC_009785.1 identified by match to protein family HMM PF01547; extracellular solute-binding protein 127262 5598744 SGO_0120 Streptococcus gordonii str. Challis substr. CH1 extracellular solute-binding protein YP_001449442.1 125910 D 467705 CDS YP_001449443.1 157150741 5599346 127327..128211 1 NC_009785.1 identified by match to protein family HMM PF00528; ABC transporter permease SP1689 128211 5599346 SGO_0121 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease SP1689 YP_001449443.1 127327 D 467705 CDS YP_001449444.1 157151332 5598674 128211..129044 1 NC_009785.1 identified by match to protein family HMM PF00528; ABC transporter permease SP1688 129044 5598674 SGO_0122 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease SP1688 YP_001449444.1 128211 D 467705 CDS YP_001449445.1 157151603 5598559 129086..130189 1 NC_009785.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; Gfo/Idh/MocA family oxidoreductase 130189 5598559 SGO_0123 Streptococcus gordonii str. Challis substr. CH1 Gfo/Idh/MocA family oxidoreductase YP_001449445.1 129086 D 467705 CDS YP_001449446.1 157150131 5599504 130252..131169 1 NC_009785.1 identified by match to protein family HMM PF00701; N-acetylneuraminate lyase 131169 5599504 SGO_0124 Streptococcus gordonii str. Challis substr. CH1 N-acetylneuraminate lyase YP_001449446.1 130252 D 467705 CDS YP_001449447.1 157150493 5598144 131203..132087 1 NC_009785.1 identified by match to protein family HMM PF00480; glucokinase 132087 xylR 5598144 xylR Streptococcus gordonii str. Challis substr. CH1 glucokinase YP_001449447.1 131203 D 467705 CDS YP_001449448.1 157150828 5599123 132133..132462 1 NC_009785.1 BlpT protein, fusion 132462 5599123 SGO_0126 Streptococcus gordonii str. Challis substr. CH1 BlpT protein, fusion YP_001449448.1 132133 D 467705 CDS YP_001449449.1 157151330 5598517 complement(132523..133377) 1 NC_009785.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator 133377 5598517 SGO_0127 Streptococcus gordonii str. Challis substr. CH1 RpiR family phosphosugar-binding transcriptional regulator YP_001449449.1 132523 R 467705 CDS YP_001449450.1 157149836 5599528 133619..133942 1 NC_009785.1 hypothetical protein 133942 5599528 SGO_0128 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449450.1 133619 D 467705 CDS YP_001449451.1 157150392 5598152 133932..135887 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 135887 atpI 5598152 atpI Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit I YP_001449451.1 133932 D 467705 CDS YP_001449452.1 157151571 5599318 136020..136499 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 136499 atpK 5599318 atpK Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit K YP_001449452.1 136020 D 467705 CDS YP_001449453.1 157150070 5598887 136510..137100 1 NC_009785.1 v-type sodium ATP synthase, chain E 137100 5598887 SGO_0131 Streptococcus gordonii str. Challis substr. CH1 v-type sodium ATP synthase, chain E YP_001449453.1 136510 D 467705 CDS YP_001449454.1 157150728 5599048 137111..138124 1 NC_009785.1 identified by match to protein family HMM PF01992; ATP synthase (C/AC39) subunit 138124 5599048 SGO_0132 Streptococcus gordonii str. Challis substr. CH1 ATP synthase (C/AC39) subunit YP_001449454.1 137111 D 467705 CDS YP_001449455.1 157151307 5598695 138111..138431 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 138431 5598695 SGO_0133 Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit F YP_001449455.1 138111 D 467705 CDS YP_001449456.1 157149819 5599186 138439..139134 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 139134 5599186 SGO_0134 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449456.1 138439 D 467705 CDS YP_001449457.1 157150337 5597743 139299..141089 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 141089 5597743 SGO_0135 Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit A YP_001449457.1 139299 D 467705 CDS YP_001449458.1 157149878 5599417 141076..142470 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 142470 5599417 SGO_0136 Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit B YP_001449458.1 141076 D 467705 CDS YP_001449459.1 157151262 5598882 142467..143090 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 143090 5598882 SGO_0137 Streptococcus gordonii str. Challis substr. CH1 V-type ATP synthase subunit D YP_001449459.1 142467 D 467705 CDS YP_001449460.1 157150806 5599868 143553..144689 1 NC_009785.1 identified by match to protein family HMM PF01476; LysM domain-containing protein 144689 5599868 SGO_0138 Streptococcus gordonii str. Challis substr. CH1 LysM domain-containing protein YP_001449460.1 143553 D 467705 CDS YP_001449461.1 157151228 5598550 144806..146290 1 NC_009785.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 146290 thrC 5598550 thrC Streptococcus gordonii str. Challis substr. CH1 threonine synthase YP_001449461.1 144806 D 467705 CDS YP_001449462.1 157150772 5598116 146397..147674 1 NC_009785.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE family transporter 147674 5598116 SGO_0140 Streptococcus gordonii str. Challis substr. CH1 MATE family transporter YP_001449462.1 146397 D 467705 CDS YP_001449463.1 157150620 5598622 147671..148285 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 148285 5598622 SGO_0141 Streptococcus gordonii str. Challis substr. CH1 HAD superfamily hydrolase YP_001449463.1 147671 D 467705 CDS YP_001449464.1 157150156 5598888 complement(148333..148818) 1 NC_009785.1 hypothetical protein 148818 5598888 SGO_0142 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449464.1 148333 R 467705 CDS YP_001449465.1 157151074 5599592 149058..152636 1 NC_009785.1 hypothetical protein 152636 5599592 SGO_0144 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449465.1 149058 D 467705 CDS YP_001449466.1 157149813 5598001 152698..155340 1 NC_009785.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 155340 polI 5598001 polI Streptococcus gordonii str. Challis substr. CH1 DNA polymerase I YP_001449466.1 152698 D 467705 CDS YP_001449467.1 157151216 5599644 155696..156133 1 NC_009785.1 identified by match to protein family HMM PF02629; CoA-binding domain-containing protein 156133 5599644 SGO_0146 Streptococcus gordonii str. Challis substr. CH1 CoA-binding domain-containing protein YP_001449467.1 155696 D 467705 CDS YP_001449468.1 157150308 5597746 156135..156632 1 NC_009785.1 hypothetical protein 156632 5597746 SGO_0147 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449468.1 156135 D 467705 CDS YP_001449469.1 157149817 5599459 156795..157409 1 NC_009785.1 hypothetical protein 157409 5599459 SGO_0148 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449469.1 156795 D 467705 CDS YP_001449470.1 157151504 5598351 157657..157977 1 NC_009785.1 hypothetical protein 157977 5598351 SGO_0149 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449470.1 157657 D 467705 CDS YP_001449471.1 157150962 5599052 158080..159546 1 NC_009785.1 identified by match to protein family HMM PF01120; alpha-L-fucosidase 159546 fucA1 5599052 fucA1 Streptococcus gordonii str. Challis substr. CH1 alpha-L-fucosidase YP_001449471.1 158080 D 467705 CDS YP_001449472.1 157151286 5598255 complement(159650..160477) 1 NC_009785.1 identified by match to protein family HMM PF06161; hypothetical protein 160477 5598255 SGO_0151 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449472.1 159650 R 467705 CDS YP_001449473.1 157150691 5599639 160617..161759 1 NC_009785.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 161759 tgt 5599639 tgt Streptococcus gordonii str. Challis substr. CH1 queuine tRNA-ribosyltransferase YP_001449473.1 160617 D 467705 CDS YP_001449474.1 157150388 5598764 161850..162383 1 NC_009785.1 identified by match to protein family HMM PF00383; putative cytidine/deoxycytidylate deaminase 162383 5598764 SGO_0153 Streptococcus gordonii str. Challis substr. CH1 putative cytidine/deoxycytidylate deaminase YP_001449474.1 161850 D 467705 CDS YP_001449475.1 157149825 5599327 163004..164353 1 NC_009785.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 164353 pgi 5599327 pgi Streptococcus gordonii str. Challis substr. CH1 glucose-6-phosphate isomerase YP_001449475.1 163004 D 467705 CDS YP_001449476.1 157150983 5598436 164536..165444 1 NC_009785.1 hypothetical protein 165444 5598436 SGO_0155 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449476.1 164536 D 467705 CDS YP_001449477.1 157151570 5598208 165466..166272 1 NC_009785.1 hypothetical protein 166272 5598208 SGO_0156 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449477.1 165466 D 467705 CDS YP_001449478.1 157150074 5598588 166681..167631 1 NC_009785.1 hypothetical protein 167631 5598588 SGO_0157 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449478.1 166681 D 467705 CDS YP_001449479.1 157150653 5599877 167743..168441 1 NC_009785.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 168441 5599877 SGO_0158 Streptococcus gordonii str. Challis substr. CH1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001449479.1 167743 D 467705 CDS YP_001449480.1 157151315 5598836 168531..169664 1 NC_009785.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; hippurate hydrolase 169664 5598836 SGO_0159 Streptococcus gordonii str. Challis substr. CH1 hippurate hydrolase YP_001449480.1 168531 D 467705 CDS YP_001449481.1 157150065 5598238 169685..170218 1 NC_009785.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 170218 5598238 SGO_0160 Streptococcus gordonii str. Challis substr. CH1 5-formyltetrahydrofolate cyclo-ligase YP_001449481.1 169685 D 467705 CDS YP_001449482.1 157150215 5599540 170199..170882 1 NC_009785.1 identified by match to protein family HMM PF01694; hypothetical protein 170882 5599540 SGO_0161 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449482.1 170199 D 467705 CDS YP_001449483.1 157150938 5599760 171195..173153 1 NC_009785.1 identified by match to protein family HMM PF03577; amylase-binding protein B 173153 abpB 5599760 abpB Streptococcus gordonii str. Challis substr. CH1 amylase-binding protein B YP_001449483.1 171195 D 467705 CDS YP_001449484.1 157150886 5598298 complement(173267..174175) 1 NC_009785.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 174175 galU 5598298 galU Streptococcus gordonii str. Challis substr. CH1 UTP-glucose-1-phosphate uridylyltransferase YP_001449484.1 173267 R 467705 CDS YP_001449485.1 157151460 5598396 complement(174205..175221) 1 NC_009785.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 175221 gpsA 5598396 gpsA Streptococcus gordonii str. Challis substr. CH1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001449485.1 174205 R 467705 CDS YP_001449486.1 157149807 5598781 175414..177123 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP-binding permease 177123 5598781 SGO_0165 Streptococcus gordonii str. Challis substr. CH1 ATP-binding permease YP_001449486.1 175414 D 467705 CDS YP_001449487.1 157150555 5598415 177125..178894 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter; ATP-binding permease 178894 5598415 SGO_0166 Streptococcus gordonii str. Challis substr. CH1 ATP-binding permease YP_001449487.1 177125 D 467705 CDS YP_001449488.1 157151119 5599008 179073..179762 1 NC_009785.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase 179762 5599008 SGO_0167 Streptococcus gordonii str. Challis substr. CH1 glutamine amidotransferase YP_001449488.1 179073 D 467705 CDS YP_001449489.1 157150773 5597915 180021..180470 1 NC_009785.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 180470 5597915 SGO_0168 Streptococcus gordonii str. Challis substr. CH1 NUDIX family hydrolase YP_001449489.1 180021 D 467705 CDS YP_001449490.1 157151249 5598620 180555..180998 1 NC_009785.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 180998 dut 5598620 dut Streptococcus gordonii str. Challis substr. CH1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001449490.1 180555 D 467705 CDS YP_001449491.1 157150197 5598703 181008..181475 1 NC_009785.1 hypothetical protein 181475 5598703 SGO_0170 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449491.1 181008 D 467705 CDS YP_001449492.1 157150256 5598170 181433..182833 1 NC_009785.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 182833 radA 5598170 radA Streptococcus gordonii str. Challis substr. CH1 DNA repair protein RadA YP_001449492.1 181433 D 467705 CDS YP_001449493.1 157151611 5597945 182946..183656 1 NC_009785.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266; hypothetical protein 183656 5597945 SGO_0172 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449493.1 182946 D 467705 CDS YP_001449494.1 157149948 5599674 183792..184286 1 NC_009785.1 identified by match to protein family HMM PF00484; carbonic anhydrase 184286 5599674 SGO_0173 Streptococcus gordonii str. Challis substr. CH1 carbonic anhydrase YP_001449494.1 183792 D 467705 CDS YP_001449495.1 157150913 5597962 184436..185893 1 NC_009785.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 185893 gltX 5597962 gltX Streptococcus gordonii str. Challis substr. CH1 glutamyl-tRNA synthetase YP_001449495.1 184436 D 467705 CDS YP_001449496.1 157151381 5598341 186069..187268 1 NC_009785.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 187268 argG 5598341 argG Streptococcus gordonii str. Challis substr. CH1 argininosuccinate synthase YP_001449496.1 186069 D 467705 CDS YP_001449497.1 157149768 5598210 187283..188668 1 NC_009785.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 188668 argH 5598210 argH Streptococcus gordonii str. Challis substr. CH1 argininosuccinate lyase YP_001449497.1 187283 D 467705 CDS YP_001449498.1 157150177 5598115 188724..188819 1 NC_009785.1 hypothetical protein 188819 5598115 SGO_0177 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449498.1 188724 D 467705 CDS YP_001449499.1 157151601 5598930 188816..189175 1 NC_009785.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 189175 rnpA 5598930 rnpA Streptococcus gordonii str. Challis substr. CH1 ribonuclease P YP_001449499.1 188816 D 467705 CDS YP_001449500.1 157149832 5598109 189159..189974 1 NC_009785.1 identified by match to protein family HMM PF02096; membrane protein oxaA 1 precursor 189974 5598109 SGO_0179 Streptococcus gordonii str. Challis substr. CH1 membrane protein oxaA 1 precursor YP_001449500.1 189159 D 467705 CDS YP_001449501.1 157150965 5598023 189990..190952 1 NC_009785.1 identified by match to protein family HMM PF01424; hypothetical protein 190952 jag 5598023 jag Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449501.1 189990 D 467705 CDS YP_001449502.1 157151555 5598248 191078..192076 1 NC_009785.1 putative lipoprotein 192076 5598248 SGO_0181 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449502.1 191078 D 467705 CDS YP_001449503.1 157151287 5599189 192091..192723 1 NC_009785.1 sakacin A production response regulator 192723 sapR 5599189 sapR Streptococcus gordonii str. Challis substr. CH1 sakacin A production response regulator YP_001449503.1 192091 D 467705 CDS YP_001449504.1 157149803 5598855 192863..192997 1 NC_009785.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 192997 rpmH 5598855 rpmH Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L34 YP_001449504.1 192863 D 467705 CDS YP_001449505.1 157151540 5597936 complement(193139..194548) 1 NC_009785.1 urease cluster protein 194548 5597936 SGO_0184 Streptococcus gordonii str. Challis substr. CH1 urease cluster protein YP_001449505.1 193139 R 467705 CDS YP_001449506.1 157150099 5598971 complement(194550..194768) 1 NC_009785.1 transcription regulator-like protein yozG 194768 5598971 SGO_0185 Streptococcus gordonii str. Challis substr. CH1 transcription regulator-like protein yozG YP_001449506.1 194550 R 467705 CDS YP_001449507.1 157149949 5597800 complement(194777..195253) 1 NC_009785.1 hypothetical protein 195253 5597800 SGO_0186 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449507.1 194777 R 467705 CDS YP_001449508.1 157150542 5597877 195416..195508 1 NC_009785.1 hypothetical protein 195508 5597877 SGO_0187 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449508.1 195416 D 467705 CDS YP_001449509.1 157150837 5599029 195505..196275 1 NC_009785.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 196275 5599029 SGO_0188 Streptococcus gordonii str. Challis substr. CH1 TatD family hydrolase YP_001449509.1 195505 D 467705 CDS YP_001449510.1 157151421 5598499 196247..196837 1 NC_009785.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 196837 5598499 SGO_0189 Streptococcus gordonii str. Challis substr. CH1 primase-like protein YP_001449510.1 196247 D 467705 CDS YP_001449511.1 157151278 5598445 196849..197703 1 NC_009785.1 identified by match to protein family HMM PF00106; hypothetical protein 197703 5598445 SGO_0190 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449511.1 196849 D 467705 CDS YP_001449512.1 157151700 5599773 197740..199155 1 NC_009785.1 hypothetical protein 199155 5599773 SGO_0191 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449512.1 197740 D 467705 CDS YP_001449513.1 157150398 5597782 199167..199502 1 NC_009785.1 hypothetical protein 199502 5597782 SGO_0192 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449513.1 199167 D 467705 CDS YP_001449514.1 157149731 5599308 199499..200371 1 NC_009785.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 200371 ksgA 5599308 ksgA Streptococcus gordonii str. Challis substr. CH1 dimethyladenosine transferase YP_001449514.1 199499 D 467705 CDS YP_001449515.1 157150853 5599542 200429..200836 1 NC_009785.1 hypothetical protein 200836 5599542 SGO_0194 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449515.1 200429 D 467705 CDS YP_001449516.1 157151409 5599846 complement(201110..202027) 1 NC_009785.1 identified by match to protein family HMM PF02517; protease 202027 5599846 SGO_0196 Streptococcus gordonii str. Challis substr. CH1 protease YP_001449516.1 201110 R 467705 CDS YP_001449517.1 157149972 5598214 202373..203251 1 NC_009785.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 203251 5598214 SGO_0197 Streptococcus gordonii str. Challis substr. CH1 ribosome-associated GTPase YP_001449517.1 202373 D 467705 CDS YP_001449518.1 157150446 5597970 203268..203927 1 NC_009785.1 identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 203927 rpe 5597970 rpe Streptococcus gordonii str. Challis substr. CH1 ribulose-phosphate 3-epimerase YP_001449518.1 203268 D 467705 CDS YP_001449519.1 157151147 5599208 203866..204552 1 NC_009785.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 204552 5599208 SGO_0199 Streptococcus gordonii str. Challis substr. CH1 thiamine pyrophosphokinase YP_001449519.1 203866 D 467705 CDS YP_001449520.1 157149772 5597867 204554..205810 1 NC_009785.1 identified by match to protein family HMM PF02646; competence-induced protein Ccs50 205810 5597867 SGO_0200 Streptococcus gordonii str. Challis substr. CH1 competence-induced protein Ccs50 YP_001449520.1 204554 D 467705 CDS YP_001449521.1 157150248 5598353 205800..206741 1 NC_009785.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966; cmp-binding-factor 1 206741 5598353 SGO_0201 Streptococcus gordonii str. Challis substr. CH1 cmp-binding-factor 1 YP_001449521.1 205800 D 467705 CDS YP_001449522.1 157150945 5599334 206837..207652 1 NC_009785.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor 207652 5599334 SGO_0202 Streptococcus gordonii str. Challis substr. CH1 pur operon repressor YP_001449522.1 206837 D 467705 CDS YP_001449523.1 157150411 5598289 207667..208206 1 NC_009785.1 hypothetical protein 208206 5598289 SGO_0203 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449523.1 207667 D 467705 CDS YP_001449524.1 157150738 5599277 208451..208864 1 NC_009785.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 208864 rpsL 5599277 rpsL Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S12 YP_001449524.1 208451 D 467705 CDS YP_001449525.1 157151622 5598678 208884..209354 1 NC_009785.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 209354 rpsG 5598678 rpsG Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S7 YP_001449525.1 208884 D 467705 CDS YP_001449526.1 157151182 5598128 209769..211850 1 NC_009785.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 211850 fusA 5598128 fusA Streptococcus gordonii str. Challis substr. CH1 elongation factor G YP_001449526.1 209769 D 467705 CDS YP_001449527.1 157151535 5597809 212083..213093 1 NC_009785.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 213093 gap 5597809 gap Streptococcus gordonii str. Challis substr. CH1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001449527.1 212083 D 467705 CDS YP_001449528.1 157150004 5599392 213339..218087 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF03644; match to protein family HMM PF04650; match to protein family HMM PF07523; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; glycosyl hydrolase family LPXTG cell wall surface protein 218087 5599392 SGO_0208 Streptococcus gordonii str. Challis substr. CH1 glycosyl hydrolase family LPXTG cell wall surface protein YP_001449528.1 213339 D 467705 CDS YP_001449529.1 157149863 5599195 218406..219605 1 NC_009785.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 219605 pgk 5599195 pgk Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate kinase YP_001449529.1 218406 D 467705 CDS YP_001449530.1 157151439 5599749 219788..224515 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167; streptococcal surface protein A 224515 sspA 5599749 sspA Streptococcus gordonii str. Challis substr. CH1 streptococcal surface protein A YP_001449530.1 219788 D 467705 CDS YP_001449531.1 157150597 5598615 224934..229433 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167; streptococcal surface protein B 229433 sspB 5598615 sspB Streptococcus gordonii str. Challis substr. CH1 streptococcal surface protein B YP_001449531.1 224934 D 467705 CDS YP_001449532.1 157151503 5598932 229679..230329 1 NC_009785.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257; putative peptidoglycan hydrolase and general stress protein 230329 5598932 SGO_0212 Streptococcus gordonii str. Challis substr. CH1 putative peptidoglycan hydrolase and general stress protein YP_001449532.1 229679 D 467705 CDS YP_001449533.1 157150950 5599707 230481..231011 1 NC_009785.1 hypothetical protein 231011 5599707 SGO_0213 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449533.1 230481 D 467705 CDS YP_001449534.1 157151542 5598279 231300..231665 1 NC_009785.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 231665 5598279 SGO_0214 Streptococcus gordonii str. Challis substr. CH1 MerR family transcriptional regulator YP_001449534.1 231300 D 467705 CDS YP_001449535.1 157150148 5599011 231695..233041 1 NC_009785.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 233041 glnA 5599011 glnA Streptococcus gordonii str. Challis substr. CH1 glutamine synthetase, type I YP_001449535.1 231695 D 467705 CDS YP_001449536.1 157150206 5598696 233095..233499 1 NC_009785.1 identified by match to protein family HMM PF00583; histone acetyltransferase HPA2 233499 5598696 SGO_0216 Streptococcus gordonii str. Challis substr. CH1 histone acetyltransferase HPA2 YP_001449536.1 233095 D 467705 CDS YP_001449537.1 157151428 5598050 233734..235068 1 NC_009785.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; proton-dependent manganese transporter group C beta 2 235068 5598050 SGO_0217 Streptococcus gordonii str. Challis substr. CH1 proton-dependent manganese transporter group C beta 2 YP_001449537.1 233734 D 467705 CDS YP_001449538.1 157151588 5597966 complement(236756..238438) 1 NC_009785.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily protein 1 238438 5597966 SGO_0219 Streptococcus gordonii str. Challis substr. CH1 metallo-beta-lactamase superfamily protein 1 YP_001449538.1 236756 R 467705 CDS YP_001449539.1 157150088 5598655 complement(238442..238672) 1 NC_009785.1 identified by match to protein family HMM PF07288; hypothetical protein 238672 5598655 SGO_0220 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449539.1 238442 R 467705 CDS YP_001449540.1 157150006 5598164 238949..239641 1 NC_009785.1 identified by match to protein family HMM PF00814; glycoprotein endopeptidase 239641 5598164 SGO_0221 Streptococcus gordonii str. Challis substr. CH1 glycoprotein endopeptidase YP_001449540.1 238949 D 467705 CDS YP_001449541.1 157150491 5598017 239590..240090 1 NC_009785.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine N-acetyltransferase 240090 5598017 SGO_0222 Streptococcus gordonii str. Challis substr. CH1 ribosomal-protein-alanine N-acetyltransferase YP_001449541.1 239590 D 467705 CDS YP_001449542.1 157151199 5599129 240080..241090 1 NC_009785.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 241090 5599129 SGO_0223 Streptococcus gordonii str. Challis substr. CH1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001449542.1 240080 D 467705 CDS YP_001449543.1 157150818 5597776 241100..241795 1 NC_009785.1 identified by match to protein family HMM PF03591; transport protein-like protein 241795 5597776 SGO_0224 Streptococcus gordonii str. Challis substr. CH1 transport protein-like protein YP_001449543.1 241100 D 467705 CDS YP_001449544.1 157149665 5598530 241785..242117 1 NC_009785.1 identified by match to protein family HMM PF05437; integral membrane protein 242117 5598530 SGO_0225 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001449544.1 241785 D 467705 CDS YP_001449545.1 157150397 5598541 242226..242972 1 NC_009785.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 242972 5598541 SGO_0226 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001449545.1 242226 D 467705 CDS YP_001449546.1 157150830 5599310 243271..243939 1 NC_009785.1 putative lipoprotein 243939 5599310 SGO_0227 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449546.1 243271 D 467705 CDS YP_001449547.1 157150046 5598512 244040..244780 1 NC_009785.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278; MerR family transcriptional regulator 244780 5598512 SGO_0228 Streptococcus gordonii str. Challis substr. CH1 MerR family transcriptional regulator YP_001449547.1 244040 D 467705 CDS YP_001449548.1 157150651 5599289 complement(244836..246011) 1 NC_009785.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 246011 5599289 SGO_0229 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449548.1 244836 R 467705 CDS YP_001449549.1 157151393 5598838 246230..246772 1 NC_009785.1 identified by match to protein family HMM PF04394; match to protein family HMM PF08279; hypothetical protein 246772 5598838 SGO_0230 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449549.1 246230 D 467705 CDS YP_001449550.1 157150925 5599680 246828..248588 1 NC_009785.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 248588 5599680 SGO_0231 Streptococcus gordonii str. Challis substr. CH1 glycerophosphoryl diester phosphodiesterase family protein YP_001449550.1 246828 D 467705 CDS YP_001449551.1 157151204 5598320 complement(248630..248989) 1 NC_009785.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 248989 5598320 SGO_0232 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449551.1 248630 R 467705 CDS YP_001449552.1 157150490 5597768 249121..249528 1 NC_009785.1 putative lipoprotein 249528 5597768 SGO_0233 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449552.1 249121 D 467705 CDS YP_001449553.1 157151296 5599130 complement(249561..251840) 1 NC_009785.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 251840 pepX 5599130 pepX Streptococcus gordonii str. Challis substr. CH1 x-prolyl-dipeptidyl aminopeptidase YP_001449553.1 249561 R 467705 CDS YP_001449554.1 157151187 5598690 251944..252795 1 NC_009785.1 identified by match to protein family HMM PF00230; glycerol uptake facilitator protein-like protein 252795 5598690 SGO_0235 Streptococcus gordonii str. Challis substr. CH1 glycerol uptake facilitator protein-like protein YP_001449554.1 251944 D 467705 CDS YP_001449555.1 157150369 5597803 252936..254216 1 NC_009785.1 hypothetical protein 254216 5597803 SGO_0236 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449555.1 252936 D 467705 CDS YP_001449556.1 157149661 5599365 254344..255081 1 NC_009785.1 proteinase 255081 5599365 SGO_0237 Streptococcus gordonii str. Challis substr. CH1 proteinase YP_001449556.1 254344 D 467705 CDS YP_001449557.1 157150926 5598567 255078..256013 1 NC_009785.1 identified by match to protein family HMM PF00144; beta-lactamase-like protein 256013 5598567 SGO_0238 Streptococcus gordonii str. Challis substr. CH1 beta-lactamase-like protein YP_001449557.1 255078 D 467705 CDS YP_001449558.1 157150364 5598319 256144..257022 1 NC_009785.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549; mevalonate kinase 257022 mvk 5598319 mvk Streptococcus gordonii str. Challis substr. CH1 mevalonate kinase YP_001449558.1 256144 D 467705 CDS YP_001449559.1 157150129 5599375 257004..257951 1 NC_009785.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240; diphosphomevalonate decarboxylase 257951 mvaD 5599375 mvaD Streptococcus gordonii str. Challis substr. CH1 diphosphomevalonate decarboxylase YP_001449559.1 257004 D 467705 CDS YP_001449560.1 157150713 5598113 257941..258960 1 NC_009785.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220; phosphomevalonate kinase 258960 5598113 SGO_0241 Streptococcus gordonii str. Challis substr. CH1 phosphomevalonate kinase YP_001449560.1 257941 D 467705 CDS YP_001449561.1 157151022 5598717 258944..259948 1 NC_009785.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 259948 5598717 SGO_0242 Streptococcus gordonii str. Challis substr. CH1 isopentenyl pyrophosphate isomerase YP_001449561.1 258944 D 467705 CDS YP_001449562.1 157150593 5598111 complement(259985..261259) 1 NC_009785.1 identified by match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative 261259 5598111 SGO_0243 Streptococcus gordonii str. Challis substr. CH1 hydroxymethylglutaryl-CoA reductase, degradative YP_001449562.1 259985 R 467705 CDS YP_001449563.1 157150507 5598937 complement(261256..262434) 1 NC_009785.1 identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 262434 5598937 SGO_0244 Streptococcus gordonii str. Challis substr. CH1 hydroxymethylglutaryl-CoA synthase YP_001449563.1 261256 R 467705 CDS YP_001449564.1 157151531 5599095 complement(262622..263077) 1 NC_009785.1 hypothetical protein 263077 5599095 SGO_0245 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449564.1 262622 R 467705 CDS YP_001449565.1 157150785 5599373 complement(263082..263840) 1 NC_009785.1 identified by match to protein family HMM PF06738; membrane spanning protein 263840 5599373 SGO_0246 Streptococcus gordonii str. Challis substr. CH1 membrane spanning protein YP_001449565.1 263082 R 467705 CDS YP_001449566.1 157150336 5598601 complement(263978..266293) 1 NC_009785.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 266293 pfl 5598601 pfl Streptococcus gordonii str. Challis substr. CH1 formate acetyltransferase YP_001449566.1 263978 R 467705 CDS YP_001449567.1 157149712 5599418 266543..267607 1 NC_009785.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 267607 5599418 SGO_0248 Streptococcus gordonii str. Challis substr. CH1 DNA polymerase IV YP_001449567.1 266543 D 467705 CDS YP_001449568.1 157151206 5598305 267819..268145 1 NC_009785.1 hypothetical protein 268145 5598305 SGO_0249 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449568.1 267819 D 467705 CDS YP_001449569.1 157151047 5597766 268464..268940 1 NC_009785.1 hypothetical protein 268940 5597766 SGO_0250 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449569.1 268464 D 467705 CDS YP_001449570.1 157151480 5598059 268892..269641 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 269641 5598059 SGO_0251 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001449570.1 268892 D 467705 CDS YP_001449571.1 157150121 5598973 269717..270355 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR-type transcriptional regulator 270355 5598973 SGO_0252 Streptococcus gordonii str. Challis substr. CH1 TetR-type transcriptional regulator YP_001449571.1 269717 D 467705 CDS YP_001449572.1 157150613 5599312 complement(270660..271604) 1 NC_009785.1 hypothetical protein 271604 5599312 SGO_0253 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449572.1 270660 R 467705 CDS YP_001449573.1 157150076 5598903 complement(271661..274027) 1 NC_009785.1 identified by match to protein family HMM TIGR01448; recombinase D 274027 5598903 SGO_0254 Streptococcus gordonii str. Challis substr. CH1 recombinase D YP_001449573.1 271661 R 467705 CDS YP_001449574.1 157151238 5599336 complement(274122..274724) 1 NC_009785.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Signal peptidase I 274724 5599336 SGO_0255 Streptococcus gordonii str. Challis substr. CH1 Signal peptidase I YP_001449574.1 274122 R 467705 CDS YP_001449575.1 157149738 5599146 complement(274728..275618) 1 NC_009785.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 275618 rnhC 5599146 rnhC Streptococcus gordonii str. Challis substr. CH1 ribonuclease HIII YP_001449575.1 274728 R 467705 CDS YP_001449576.1 157150319 5599577 275610..275726 1 NC_009785.1 hypothetical protein 275726 5599577 SGO_0257 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449576.1 275610 D 467705 CDS YP_001449577.1 157150872 5599440 275768..276073 1 NC_009785.1 hypothetical protein 276073 5599440 SGO_0258 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449577.1 275768 D 467705 CDS YP_001449578.1 157149826 5598428 276070..276621 1 NC_009785.1 identified by match to protein family HMM PF02674; CvpA family protein 276621 cvpA 5598428 cvpA Streptococcus gordonii str. Challis substr. CH1 CvpA family protein YP_001449578.1 276070 D 467705 CDS YP_001449579.1 157150407 5598412 276677..279010 1 NC_009785.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; DNA mismatch binding protein MutS2 279010 5598412 SGO_0260 Streptococcus gordonii str. Challis substr. CH1 DNA mismatch binding protein MutS2 YP_001449579.1 276677 D 467705 CDS YP_001449580.1 157151653 5599284 279021..279665 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 279665 5599284 SGO_0261 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449580.1 279021 D 467705 CDS YP_001449581.1 157151240 5597996 279766..281184 1 NC_009785.1 identified by match to protein family HMM PF03577; dipeptidase 281184 5597996 SGO_0262 Streptococcus gordonii str. Challis substr. CH1 dipeptidase YP_001449581.1 279766 D 467705 CDS YP_001449582.1 157150444 5599787 281269..281583 1 NC_009785.1 identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 281583 trx-1 5599787 trx-1 Streptococcus gordonii str. Challis substr. CH1 thioredoxin YP_001449582.1 281269 D 467705 CDS YP_001449583.1 157151113 5599214 complement(281745..282263) 1 NC_009785.1 hypothetical protein 282263 5599214 SGO_0264 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449583.1 281745 R 467705 CDS YP_001449584.1 157151347 5597925 282372..283118 1 NC_009785.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 283118 nac 5597925 nac Streptococcus gordonii str. Challis substr. CH1 LysR family transcriptional regulator YP_001449584.1 282372 D 467705 CDS YP_001449585.1 157149829 5598132 283218..283625 1 NC_009785.1 hypothetical protein 283625 5598132 SGO_0266 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449585.1 283218 D 467705 CDS YP_001449586.1 157151224 5599651 283883..285322 1 NC_009785.1 identified by match to protein family HMM PF00324; amino acid permease family protein 285322 5599651 SGO_0267 Streptococcus gordonii str. Challis substr. CH1 amino acid permease family protein YP_001449586.1 283883 D 467705 CDS YP_001449587.1 157150649 5597733 285466..286305 1 NC_009785.1 identified by match to protein family HMM PF00924; mechanosensitive transport protein 286305 5597733 SGO_0268 Streptococcus gordonii str. Challis substr. CH1 mechanosensitive transport protein YP_001449587.1 285466 D 467705 CDS YP_001449588.1 157151642 5598840 286342..286956 1 NC_009785.1 hypothetical protein 286956 5598840 SGO_0269 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449588.1 286342 D 467705 CDS YP_001449589.1 157150957 5599781 complement(287036..288250) 1 NC_009785.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 288250 gltP 5599781 gltP Streptococcus gordonii str. Challis substr. CH1 serine/threonine transporter SstT YP_001449589.1 287036 R 467705 CDS YP_001449590.1 157150358 5598262 288632..289534 1 NC_009785.1 hypothetical protein 289534 5598262 SGO_0271 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449590.1 288632 D 467705 CDS YP_001449591.1 157150017 5599382 289599..289967 1 NC_009785.1 hypothetical protein 289967 5599382 SGO_0272 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449591.1 289599 D 467705 CDS YP_001449592.1 157150709 5599267 290379..291383 1 NC_009785.1 identified by match to protein family HMM PF08240; zinc-binding oxidoreductase 291383 5599267 SGO_0273 Streptococcus gordonii str. Challis substr. CH1 zinc-binding oxidoreductase YP_001449592.1 290379 D 467705 CDS YP_001449593.1 157150385 5598722 291400..292044 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 292044 5598722 SGO_0274 Streptococcus gordonii str. Challis substr. CH1 TetR family transcriptional regulator YP_001449593.1 291400 D 467705 CDS YP_001449594.1 157149898 5599338 complement(292331..292816) 1 NC_009785.1 identified by match to protein family HMM PF00583; MarR family transcriptional regulator 292816 5599338 SGO_0275 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001449594.1 292331 R 467705 CDS YP_001449595.1 157151271 5598471 complement(292848..294194) 1 NC_009785.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 294194 gdhA 5598471 gdhA Streptococcus gordonii str. Challis substr. CH1 glutamate dehydrogenase YP_001449595.1 292848 R 467705 CDS YP_001449596.1 157149990 5599798 294430..295368 1 NC_009785.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group; dihydroorotate dehydrogenase 1A 295368 pyrA 5599798 pyrA Streptococcus gordonii str. Challis substr. CH1 dihydroorotate dehydrogenase 1A YP_001449596.1 294430 D 467705 CDS YP_001449597.1 157151606 5599737 295532..296467 1 NC_009785.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase msrA/msrB 296467 msrA 5599737 msrA Streptococcus gordonii str. Challis substr. CH1 peptide methionine sulfoxide reductase msrA/msrB YP_001449597.1 295532 D 467705 CDS YP_001449598.1 157150686 5599089 296552..297238 1 NC_009785.1 putative lipoprotein 297238 5599089 SGO_0279 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449598.1 296552 D 467705 CDS YP_001449599.1 157150044 5598771 297405..298601 1 NC_009785.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; chlorohydrolase 298601 trzA 5598771 trzA Streptococcus gordonii str. Challis substr. CH1 chlorohydrolase YP_001449599.1 297405 D 467705 CDS YP_001449600.1 157151253 5599741 298883..300772 1 NC_009785.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 300772 5599741 SGO_0281 Streptococcus gordonii str. Challis substr. CH1 PTS system beta-glucoside-specific transporter subunit IIABC YP_001449600.1 298883 D 467705 CDS YP_001449601.1 157151407 5599512 300929..302191 1 NC_009785.1 cell wall polysaccharide biosynthesis protein 302191 5599512 SGO_0282 Streptococcus gordonii str. Challis substr. CH1 cell wall polysaccharide biosynthesis protein YP_001449601.1 300929 D 467705 CDS YP_001449602.1 157150975 5597888 302294..302521 1 NC_009785.1 hypothetical protein 302521 5597888 SGO_0283 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449602.1 302294 D 467705 CDS YP_001449603.1 157150511 5598234 complement(302843..303715) 1 NC_009785.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883; transcriptional regulator 303715 5598234 SGO_0284 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001449603.1 302843 R 467705 CDS YP_001449604.1 157151099 5599090 303826..305262 1 NC_009785.1 identified by match to protein family HMM PF00232; phospho beta-glucosidase 305262 pbg 5599090 pbg Streptococcus gordonii str. Challis substr. CH1 phospho beta-glucosidase YP_001449604.1 303826 D 467705 CDS YP_001449605.1 157150630 5597946 305385..307055 1 NC_009785.1 identified by match to protein family HMM PF00488; DNA mismatch repair protein MutS 307055 5597946 SGO_0286 Streptococcus gordonii str. Challis substr. CH1 DNA mismatch repair protein MutS YP_001449605.1 305385 D 467705 CDS YP_001449606.1 157150823 5598868 307052..307879 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; haloacid dehalogenase-like hydrolase 307879 5598868 SGO_0287 Streptococcus gordonii str. Challis substr. CH1 haloacid dehalogenase-like hydrolase YP_001449606.1 307052 D 467705 CDS YP_001449607.1 157151250 5598523 307932..308516 1 NC_009785.1 identified by similarity to GB:AAM99985.1; match to protein family HMM PF00657; GDSL-like lipase/acylhydrolase 308516 5598523 SGO_0288 Streptococcus gordonii str. Challis substr. CH1 GDSL-like lipase/acylhydrolase YP_001449607.1 307932 D 467705 CDS YP_001449608.1 157151615 5599268 308665..309060 1 NC_009785.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698; COPAB ATPases metal-fist type repressor 309060 5599268 SGO_0289 Streptococcus gordonii str. Challis substr. CH1 COPAB ATPases metal-fist type repressor YP_001449608.1 308665 D 467705 CDS YP_001449609.1 157150000 5599526 309079..309450 1 NC_009785.1 copper -translocating P-type ATPase 309450 5599526 SGO_0290 Streptococcus gordonii str. Challis substr. CH1 copper -translocating P-type ATPase YP_001449609.1 309079 D 467705 CDS YP_001449610.1 157149893 5599128 309461..311683 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 311683 5599128 SGO_0291 Streptococcus gordonii str. Challis substr. CH1 copper-translocating P-type ATPase YP_001449610.1 309461 D 467705 CDS YP_001449611.1 157150311 5598536 312135..313910 1 NC_009785.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720; pyruvate oxidase 313910 spxB 5598536 spxB Streptococcus gordonii str. Challis substr. CH1 pyruvate oxidase YP_001449611.1 312135 D 467705 CDS YP_001449612.1 157150752 5599456 314064..314411 1 NC_009785.1 identified by match to protein family HMM PF00903; glyoxalase 314411 5599456 SGO_0293 Streptococcus gordonii str. Challis substr. CH1 glyoxalase YP_001449612.1 314064 D 467705 CDS YP_001449613.1 157151223 5598651 314953..316527 1 NC_009785.1 identified by match to protein family HMM PF00005; putative ABC transporter 316527 5598651 SGO_0294 Streptococcus gordonii str. Challis substr. CH1 putative ABC transporter YP_001449613.1 314953 D 467705 CDS YP_001449614.1 157149737 5597734 316618..316785 1 NC_009785.1 hypothetical protein 316785 5597734 SGO_0295 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449614.1 316618 D 467705 CDS YP_001449615.1 157150327 5598652 316778..317038 1 NC_009785.1 integral membrane protein 317038 5598652 SGO_0296 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001449615.1 316778 D 467705 CDS YP_001449616.1 157151619 5599430 317247..318686 1 NC_009785.1 required for arbutin uptake and metabolism; 6-phospho-beta-glucosidase 318686 arb 5599430 arb Streptococcus gordonii str. Challis substr. CH1 6-phospho-beta-glucosidase YP_001449616.1 317247 D 467705 CDS YP_001449617.1 157149761 5598178 319070..319750 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 319750 5598178 SGO_0298 Streptococcus gordonii str. Challis substr. CH1 two-component response regulator YP_001449617.1 319070 D 467705 CDS YP_001449618.1 157150245 5597813 319751..320626 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; putative histidine kinase 320626 5597813 SGO_0299 Streptococcus gordonii str. Challis substr. CH1 putative histidine kinase YP_001449618.1 319751 D 467705 CDS YP_001449619.1 157151645 5599247 complement(320833..321555) 1 NC_009785.1 hypothetical protein 321555 5599247 SGO_0300 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449619.1 320833 R 467705 CDS YP_001449620.1 157150404 5598082 complement(321548..322480) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 322480 5598082 SGO_0301 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449620.1 321548 R 467705 CDS YP_001449621.1 157150482 5599296 complement(322628..323323) 1 NC_009785.1 hypothetical protein 323323 5599296 SGO_0302 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449621.1 322628 R 467705 CDS YP_001449622.1 157150611 5599142 complement(323336..324244) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 324244 5599142 SGO_0303 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449622.1 323336 R 467705 CDS YP_001449623.1 157150708 5598905 complement(324387..325079) 1 NC_009785.1 hypothetical protein 325079 5598905 SGO_0304 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449623.1 324387 R 467705 CDS YP_001449624.1 157151168 5598723 complement(325117..325875) 1 NC_009785.1 hypothetical protein 325875 5598723 SGO_0305 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449624.1 325117 R 467705 CDS YP_001449625.1 157151609 5597835 complement(325892..326800) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 326800 5597835 SGO_0306 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449625.1 325892 R 467705 CDS YP_001449626.1 157151394 5598086 complement(327021..328700) 1 NC_009785.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553; chorismate binding protein 328700 pabB 5598086 pabB Streptococcus gordonii str. Challis substr. CH1 chorismate binding protein YP_001449626.1 327021 R 467705 CDS YP_001449627.1 157150454 5599642 328713..328805 1 NC_009785.1 hypothetical protein 328805 5599642 SGO_0308 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449627.1 328713 D 467705 CDS YP_001449628.1 157150942 5599193 328887..329258 1 NC_009785.1 insulin activator factor 329258 5599193 SGO_0309 Streptococcus gordonii str. Challis substr. CH1 insulin activator factor YP_001449628.1 328887 D 467705 CDS YP_001449629.1 157151395 5598292 329538..331790 1 NC_009785.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 331790 metE 5598292 metE Streptococcus gordonii str. Challis substr. CH1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001449629.1 329538 D 467705 CDS YP_001449630.1 157149732 5598252 331928..332782 1 NC_009785.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 332782 metF 5598252 metF Streptococcus gordonii str. Challis substr. CH1 5,10-methylenetetrahydrofolate reductase YP_001449630.1 331928 D 467705 CDS YP_001449631.1 157150221 5599704 333239..335623 1 NC_009785.1 identified by match to protein family HMM PF03894; putative phosphoketolase 335623 xfp 5599704 xfp Streptococcus gordonii str. Challis substr. CH1 putative phosphoketolase YP_001449631.1 333239 D 467705 CDS YP_001449632.1 157149798 5599740 335846..336688 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family phosphatase 336688 5599740 SGO_0313 Streptococcus gordonii str. Challis substr. CH1 HAD family phosphatase YP_001449632.1 335846 D 467705 CDS YP_001449633.1 157150605 5598563 336700..337296 1 NC_009785.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 337296 5598563 SGO_0314 Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate mutase family protein YP_001449633.1 336700 D 467705 CDS YP_001449634.1 157151359 5598913 337293..337904 1 NC_009785.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 337904 5598913 SGO_0315 Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate mutase family protein YP_001449634.1 337293 D 467705 CDS YP_001449635.1 157151510 5598026 338351..342835 1 NC_009785.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; serine protease subtilase family LPXTG cell wall surface protein 342835 5598026 SGO_0316 Streptococcus gordonii str. Challis substr. CH1 serine protease subtilase family LPXTG cell wall surface protein YP_001449635.1 338351 D 467705 CDS YP_001449636.1 157150159 5599733 342920..347404 1 NC_009785.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; serine protease subtilase family LPXTG cell wall surface protein 347404 5599733 SGO_0317 Streptococcus gordonii str. Challis substr. CH1 serine protease subtilase family LPXTG cell wall surface protein YP_001449636.1 342920 D 467705 CDS YP_001449637.1 157151194 5599515 complement(347496..347912) 1 NC_009785.1 hypothetical protein 347912 5599515 SGO_0318 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449637.1 347496 R 467705 CDS YP_001449638.1 157151618 5597786 complement(347893..348792) 1 NC_009785.1 hypothetical protein 348792 5597786 SGO_0319 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449638.1 347893 R 467705 CDS YP_001449639.1 157149757 5598188 complement(348789..349832) 1 NC_009785.1 identified by match to protein family HMM PF00535; dolichol-phosphate mannosyltransferase 349832 5598188 SGO_0320 Streptococcus gordonii str. Challis substr. CH1 dolichol-phosphate mannosyltransferase YP_001449639.1 348789 R 467705 CDS YP_001449640.1 157150181 5599771 complement(350062..350676) 1 NC_009785.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 350676 def 5599771 def Streptococcus gordonii str. Challis substr. CH1 peptide deformylase YP_001449640.1 350062 R 467705 CDS YP_001449641.1 157149933 5598835 350832..351974 1 NC_009785.1 identified by match to protein family HMM PF07690; hypothetical protein 351974 5598835 SGO_0322 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449641.1 350832 D 467705 CDS YP_001449642.1 157150331 5599519 351976..352704 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase rRNA-specific 352704 5599519 SGO_0323 Streptococcus gordonii str. Challis substr. CH1 pseudouridine synthase rRNA-specific YP_001449642.1 351976 D 467705 CDS YP_001449643.1 157150323 5599423 353178..354959 1 NC_009785.1 hypothetical protein 354959 5599423 SGO_0324 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449643.1 353178 D 467705 CDS YP_001449644.1 157149735 5599435 354961..355860 1 NC_009785.1 hypothetical protein 355860 5599435 SGO_0325 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449644.1 354961 D 467705 CDS YP_001449645.1 157151686 5598591 355870..357699 1 NC_009785.1 hypothetical protein 357699 5598591 SGO_0326 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449645.1 355870 D 467705 CDS YP_001449646.1 157151143 5598583 357720..359120 1 NC_009785.1 identified by match to protein family HMM PF00534; lipopolysaccharide N-acetylglucosaminyltransferase 359120 5598583 SGO_0327 Streptococcus gordonii str. Challis substr. CH1 lipopolysaccharide N-acetylglucosaminyltransferase YP_001449646.1 357720 D 467705 CDS YP_001449647.1 157150091 5597874 359120..360565 1 NC_009785.1 putative ortholog of TM1408; transmembrane protein 360565 5597874 SGO_0328 Streptococcus gordonii str. Challis substr. CH1 transmembrane protein YP_001449647.1 359120 D 467705 CDS YP_001449648.1 157151581 5597978 360558..362333 1 NC_009785.1 hypothetical protein 362333 5597978 SGO_0329 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449648.1 360558 D 467705 CDS YP_001449649.1 157151012 5599714 362296..363054 1 NC_009785.1 hypothetical protein 363054 5599714 SGO_0330 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449649.1 362296 D 467705 CDS YP_001449650.1 157150826 5598135 363073..363744 1 NC_009785.1 hypothetical protein 363744 5598135 SGO_0331 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449650.1 363073 D 467705 CDS YP_001449651.1 157150509 5598519 363761..365146 1 NC_009785.1 hypothetical protein 365146 5598519 SGO_0332 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449651.1 363761 D 467705 CDS YP_001449652.1 157150155 5599092 365374..365643 1 NC_009785.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 365643 rpsO 5599092 rpsO Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S15 YP_001449652.1 365374 D 467705 CDS YP_001449653.1 157150033 5599605 complement(366257..367183) 1 NC_009785.1 identified by match to protein family HMM PF00561; cinnamoyl ester hydrolase 367183 5599605 SGO_0334 Streptococcus gordonii str. Challis substr. CH1 cinnamoyl ester hydrolase YP_001449653.1 366257 R 467705 CDS YP_001449654.1 157150567 5599576 367472..367885 1 NC_009785.1 hypothetical protein 367885 5599576 SGO_0335 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449654.1 367472 D 467705 CDS YP_001449655.1 157150973 5598983 368075..368296 1 NC_009785.1 hypothetical protein 368296 5598983 SGO_0336 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449655.1 368075 D 467705 CDS YP_001449656.1 157149859 5598236 368312..368626 1 NC_009785.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 368626 trx-2 5598236 trx-2 Streptococcus gordonii str. Challis substr. CH1 thioredoxin YP_001449656.1 368312 D 467705 CDS YP_001449657.1 157149866 5599036 complement(368726..369394) 1 NC_009785.1 identified by match to protein family HMM PF00230; aquaporin Z, water channel protein 369394 5599036 SGO_0338 Streptococcus gordonii str. Challis substr. CH1 aquaporin Z, water channel protein YP_001449657.1 368726 R 467705 CDS YP_001449658.1 157150329 5598587 complement(369505..370296) 1 NC_009785.1 hypothetical protein 370296 5598587 SGO_0339 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449658.1 369505 R 467705 CDS YP_001449659.1 157150824 5599425 370590..371180 1 NC_009785.1 identified by match to protein family HMM PF07366; hypothetical protein 371180 5599425 SGO_0340 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449659.1 370590 D 467705 CDS YP_001449660.1 157151521 5598521 complement(371472..372116) 1 NC_009785.1 putative lipoprotein 372116 5598521 SGO_0341 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449660.1 371472 R 467705 CDS YP_001449661.1 157150798 5599762 complement(372282..374078) 1 NC_009785.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase 374078 pepF-2 5599762 pepF-2 Streptococcus gordonii str. Challis substr. CH1 oligoendopeptidase YP_001449661.1 372282 R 467705 CDS YP_001449662.1 157149992 5598574 complement(374193..375554) 1 NC_009785.1 identified by match to protein family HMM PF07690; major facilitator transporter 375554 5598574 SGO_0343 Streptococcus gordonii str. Challis substr. CH1 major facilitator transporter YP_001449662.1 374193 R 467705 CDS YP_001449663.1 157150941 5598659 376196..378382 1 NC_009785.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 378382 pnpA 5598659 pnpA Streptococcus gordonii str. Challis substr. CH1 polynucleotide phosphorylase/polyadenylase YP_001449663.1 376196 D 467705 CDS YP_001449664.1 157150533 5598295 378469..379086 1 NC_009785.1 identified by match to protein family HMM TIGR01172; serine O-acetyltransferase 379086 cysE 5598295 cysE Streptococcus gordonii str. Challis substr. CH1 serine O-acetyltransferase YP_001449664.1 378469 D 467705 CDS YP_001449665.1 157151661 5599046 379135..379335 1 NC_009785.1 hypothetical protein 379335 5599046 SGO_0346 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449665.1 379135 D 467705 CDS YP_001449666.1 157151107 5597929 379349..380113 1 NC_009785.1 purine nucleoside phosphorylase 380113 5597929 SGO_0347 Streptococcus gordonii str. Challis substr. CH1 purine nucleoside phosphorylase YP_001449666.1 379349 D 467705 CDS YP_001449667.1 157150202 5597932 380122..380643 1 NC_009785.1 reductase 380643 5597932 SGO_0348 Streptococcus gordonii str. Challis substr. CH1 reductase YP_001449667.1 380122 D 467705 CDS YP_001449668.1 157150688 5598119 380661..382004 1 NC_009785.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 382004 cysS 5598119 cysS Streptococcus gordonii str. Challis substr. CH1 cysteinyl-tRNA synthetase YP_001449668.1 380661 D 467705 CDS YP_001449669.1 157151297 5598767 381997..382401 1 NC_009785.1 identified by match to protein family HMM PF00636; cysteinyl-tRNA synthetase 382401 5598767 SGO_0350 Streptococcus gordonii str. Challis substr. CH1 cysteinyl-tRNA synthetase YP_001449669.1 381997 D 467705 CDS YP_001449670.1 157150054 5597790 382388..383263 1 NC_009785.1 leucine-rich protein 383263 5597790 SGO_0351 Streptococcus gordonii str. Challis substr. CH1 leucine-rich protein YP_001449670.1 382388 D 467705 CDS YP_001449671.1 157150645 5599748 383372..384502 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; ABC transporter ATP-binding protein 384502 5599748 SGO_0352 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449671.1 383372 D 467705 CDS YP_001449672.1 157151008 5598846 384885..386732 1 NC_009785.1 transporter 386732 5598846 SGO_0353 Streptococcus gordonii str. Challis substr. CH1 transporter YP_001449672.1 384885 D 467705 CDS YP_001449673.1 157149837 5598143 complement(386800..387762) 1 NC_009785.1 identified by match to protein family HMM PF06081; membrane spanning protein 387762 5598143 SGO_0354 Streptococcus gordonii str. Challis substr. CH1 membrane spanning protein YP_001449673.1 386800 R 467705 CDS YP_001449674.1 157150299 5599538 387910..388641 1 NC_009785.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 388641 5599538 SGO_0355 Streptococcus gordonii str. Challis substr. CH1 RNA methyltransferase YP_001449674.1 387910 D 467705 CDS YP_001449675.1 157150774 5599472 388641..389285 1 NC_009785.1 hypothetical protein 389285 5599472 SGO_0356 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449675.1 388641 D 467705 CDS YP_001449676.1 157151232 5598618 389427..390290 1 NC_009785.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family fatty acid binding protein 390290 degV 5598618 degV Streptococcus gordonii str. Challis substr. CH1 DegV family fatty acid binding protein YP_001449676.1 389427 D 467705 CDS YP_001449677.1 157149848 5599524 390486..390932 1 NC_009785.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 390932 rplM 5599524 rplM Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L13 YP_001449677.1 390486 D 467705 CDS YP_001449678.1 157150984 5599571 390952..391344 1 NC_009785.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 391344 rpsI 5599571 rpsI Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S9 YP_001449678.1 390952 D 467705 CDS YP_001449679.1 157149671 5598207 complement(391476..392630) 1 NC_009785.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 392630 5598207 SGO_0360 Streptococcus gordonii str. Challis substr. CH1 phage integrase family site specific recombinase YP_001449679.1 391476 R 467705 CDS YP_001449680.1 157150294 5598422 complement(392682..393200) 1 NC_009785.1 identified by match to protein family HMM PF01381; immunity repressor protein 393200 5598422 SGO_0361 Streptococcus gordonii str. Challis substr. CH1 immunity repressor protein YP_001449680.1 392682 R 467705 CDS YP_001449681.1 157150862 5599479 393348..393629 1 NC_009785.1 hypothetical protein 393629 5599479 SGO_0362 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449681.1 393348 D 467705 CDS YP_001449682.1 157151416 5598440 393638..394477 1 NC_009785.1 identified by match to protein family HMM TIGR01714; gp49 bacteriophage-like protein 394477 5598440 SGO_0363 Streptococcus gordonii str. Challis substr. CH1 gp49 bacteriophage-like protein YP_001449682.1 393638 D 467705 CDS YP_001449683.1 157149937 5597950 394836..395168 1 NC_009785.1 hypothetical protein 395168 5597950 SGO_0364 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449683.1 394836 D 467705 CDS YP_001449684.1 157150575 5599497 395149..395343 1 NC_009785.1 hypothetical protein 395343 5599497 SGO_0365 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449684.1 395149 D 467705 CDS YP_001449685.1 157151156 5598964 396635..397249 1 NC_009785.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779; cadmium resistance protein 397249 cadD 5598964 cadD Streptococcus gordonii str. Challis substr. CH1 cadmium resistance protein YP_001449685.1 396635 D 467705 CDS YP_001449686.1 157150707 5597854 397261..397599 1 NC_009785.1 identified by match to protein family HMM PF01022; cadmium efflux protein 397599 cadX 5597854 cadX Streptococcus gordonii str. Challis substr. CH1 cadmium efflux protein YP_001449686.1 397261 D 467705 CDS YP_001449687.1 157151369 5598726 398290..400185 1 NC_009785.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercury(II) reductase 400185 merA 5598726 merA Streptococcus gordonii str. Challis substr. CH1 mercury(II) reductase YP_001449687.1 398290 D 467705 CDS YP_001449688.1 157149727 5598802 complement(402256..403134) 1 NC_009785.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; malolactic fermentation system transcriptional activator 403134 5598802 SGO_0370 Streptococcus gordonii str. Challis substr. CH1 malolactic fermentation system transcriptional activator YP_001449688.1 402256 R 467705 CDS YP_001449689.1 157151313 5598842 complement(403260..403610) 1 NC_009785.1 identified by match to protein family HMM PF01381; putative transcriptional regulator 403610 5598842 SGO_0371 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001449689.1 403260 R 467705 CDS YP_001449690.1 157150912 5599634 403981..405606 1 NC_009785.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 405606 5599634 SGO_0372 Streptococcus gordonii str. Challis substr. CH1 malate dehydrogenase YP_001449690.1 403981 D 467705 CDS YP_001449691.1 157150343 5598344 405683..406630 1 NC_009785.1 identified by match to protein family HMM PF03547; malate permease 406630 5598344 SGO_0373 Streptococcus gordonii str. Challis substr. CH1 malate permease YP_001449691.1 405683 D 467705 CDS YP_001449692.1 157151586 5599407 407897..408631 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; response regulator 408631 5599407 SGO_0374 Streptococcus gordonii str. Challis substr. CH1 response regulator YP_001449692.1 407897 D 467705 CDS YP_001449693.1 157150669 5598221 410256..410936 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 410936 5598221 SGO_0376 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449693.1 410256 D 467705 CDS YP_001449694.1 157150086 5598805 411043..411648 1 NC_009785.1 hypothetical protein 411648 5598805 SGO_0377 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449694.1 411043 D 467705 CDS YP_001449695.1 157150623 5598278 complement(412000..412203) 1 NC_009785.1 identified by match to protein family HMM PF05532; hypothetical protein 412203 5598278 SGO_0378 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449695.1 412000 R 467705 CDS YP_001449696.1 157150134 5598878 complement(412385..413014) 1 NC_009785.1 identified by match to protein family HMM PF04239; hypothetical protein 413014 5598878 SGO_0379 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449696.1 412385 R 467705 CDS YP_001449697.1 157151523 5598159 complement(413014..413466) 1 NC_009785.1 hypothetical protein 413466 5598159 SGO_0380 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449697.1 413014 R 467705 CDS YP_001449698.1 157151046 5599288 413751..414299 1 NC_009785.1 hypothetical protein 414299 5599288 SGO_0381 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449698.1 413751 D 467705 CDS YP_001449699.1 157151493 5598441 415141..416391 1 NC_009785.1 identified by match to protein family HMM PF00375; proton/sodium- glutamate symport protein 416391 5598441 SGO_0383 Streptococcus gordonii str. Challis substr. CH1 proton/sodium- glutamate symport protein YP_001449699.1 415141 D 467705 CDS YP_001449700.1 157150733 5598953 416406..417344 1 NC_009785.1 putative carboxylate-amine/thiol ligase 417344 5598953 SGO_0384 Streptococcus gordonii str. Challis substr. CH1 putative carboxylate-amine/thiol ligase YP_001449700.1 416406 D 467705 CDS YP_001449701.1 157151265 5598685 417623..421849 1 NC_009785.1 identified by match to protein family HMM PF00251; match to protein family HMM PF00746; match to protein family HMM PF02368; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF08244; match to protein family HMM TIGR01167; exo-beta-D-fructosidase 421849 5598685 SGO_0385 Streptococcus gordonii str. Challis substr. CH1 exo-beta-D-fructosidase YP_001449701.1 417623 D 467705 CDS YP_001449702.1 157150576 5599766 complement(421998..422834) 1 NC_009785.1 identified by match to protein family HMM PF00376; multidrug ABC transporter 422834 5599766 SGO_0386 Streptococcus gordonii str. Challis substr. CH1 multidrug ABC transporter YP_001449702.1 421998 R 467705 CDS YP_001449703.1 157150227 5598960 422921..423955 1 NC_009785.1 identified by match to protein family HMM PF01113; hypothetical protein 423955 5598960 SGO_0387 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449703.1 422921 D 467705 CDS YP_001449704.1 157151173 5599311 complement(424014..427271) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein, zinc carboxypeptidase family 427271 5599311 SGO_0388 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein, zinc carboxypeptidase family YP_001449704.1 424014 R 467705 CDS YP_001449705.1 157151629 5597829 427586..427852 1 NC_009785.1 ACT domain-containing protein; hypothetical protein 427852 5597829 SGO_0389 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449705.1 427586 D 467705 CDS YP_001449706.1 157150016 5597737 427863..429200 1 NC_009785.1 identified by match to protein family HMM PF05167; hypothetical protein 429200 5597737 SGO_0390 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449706.1 427863 D 467705 CDS YP_001449707.1 157150483 5599613 429295..429945 1 NC_009785.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase 429945 5599613 SGO_0391 Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate mutase YP_001449707.1 429295 D 467705 CDS YP_001449708.1 157150191 5599140 430010..430696 1 NC_009785.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase 430696 5599140 SGO_0392 Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate mutase YP_001449708.1 430010 D 467705 CDS YP_001449709.1 157150900 5598434 430758..431498 1 NC_009785.1 identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 431498 5598434 SGO_0393 Streptococcus gordonii str. Challis substr. CH1 D-alanyl-D-alanine carboxypeptidase YP_001449709.1 430758 D 467705 CDS YP_001449710.1 157151673 5598371 431617..432201 1 NC_009785.1 hypothetical protein 432201 5598371 SGO_0394 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449710.1 431617 D 467705 CDS YP_001449711.1 157151530 5599511 432198..432413 1 NC_009785.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 432413 5599511 SGO_0395 Streptococcus gordonii str. Challis substr. CH1 Cro/CI family transcriptional regulator YP_001449711.1 432198 D 467705 CDS YP_001449712.1 157149879 5599381 432516..432839 1 NC_009785.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551; PadR family transcriptional regulator 432839 5599381 SGO_0396 Streptococcus gordonii str. Challis substr. CH1 PadR family transcriptional regulator YP_001449712.1 432516 D 467705 CDS YP_001449713.1 157151575 5598908 432839..433411 1 NC_009785.1 hypothetical protein 433411 5598908 SGO_0397 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449713.1 432839 D 467705 CDS YP_001449714.1 157149783 5599718 433435..434292 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 434292 5599718 SGO_0398 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449714.1 433435 D 467705 CDS YP_001449715.1 157150682 5599075 434285..435013 1 NC_009785.1 hypothetical protein 435013 5599075 SGO_0399 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449715.1 434285 D 467705 CDS YP_001449716.1 157150976 5598784 435177..436211 1 NC_009785.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 436211 hrcA 5598784 hrcA Streptococcus gordonii str. Challis substr. CH1 heat-inducible transcription repressor YP_001449716.1 435177 D 467705 CDS YP_001449717.1 157150795 5598233 436247..436780 1 NC_009785.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 436780 grpE 5598233 grpE Streptococcus gordonii str. Challis substr. CH1 heat shock protein GrpE YP_001449717.1 436247 D 467705 CDS YP_001449718.1 157151283 5598582 437031..438854 1 NC_009785.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 438854 dnaK 5598582 dnaK Streptococcus gordonii str. Challis substr. CH1 molecular chaperone DnaK YP_001449718.1 437031 D 467705 CDS YP_001449719.1 157149887 5599413 439070..439702 1 NC_009785.1 identified by match to protein family HMM PF01965; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein 439702 thiJ-2 5599413 thiJ-2 Streptococcus gordonii str. Challis substr. CH1 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein YP_001449719.1 439070 D 467705 CDS YP_001449720.1 157150340 5599585 439999..441144 1 NC_009785.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 441144 dnaJ 5599585 dnaJ Streptococcus gordonii str. Challis substr. CH1 chaperone protein DnaJ YP_001449720.1 439999 D 467705 CDS YP_001449721.1 157150906 5599410 441373..444945 1 NC_009785.1 identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; Beta-N-acetylhexosaminidase 444945 5599410 SGO_0405 Streptococcus gordonii str. Challis substr. CH1 Beta-N-acetylhexosaminidase YP_001449721.1 441373 D 467705 CDS YP_001449722.1 157150176 5598359 complement(445106..445579) 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 445579 5598359 SGO_0406 Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001449722.1 445106 R 467705 CDS YP_001449723.1 157150719 5598962 445679..446428 1 NC_009785.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 446428 truA 5598962 truA Streptococcus gordonii str. Challis substr. CH1 tRNA pseudouridine synthase A YP_001449723.1 445679 D 467705 CDS YP_001449724.1 157150389 5598709 446803..452745 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; zinc metalloproteinase B 452745 zmpB 5598709 zmpB Streptococcus gordonii str. Challis substr. CH1 zinc metalloproteinase B YP_001449724.1 446803 D 467705 CDS YP_001449725.1 157149808 5599322 453129..453890 1 NC_009785.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 453890 5599322 SGO_0409 Streptococcus gordonii str. Challis substr. CH1 phosphomethylpyrimidine kinase YP_001449725.1 453129 D 467705 CDS YP_001449726.1 157151560 5598209 453880..454362 1 NC_009785.1 integral membrane protein 454362 5598209 SGO_0410 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001449726.1 453880 D 467705 CDS YP_001449727.1 157150974 5599099 454375..454938 1 NC_009785.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein 454938 5599099 SGO_0411 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449727.1 454375 D 467705 CDS YP_001449728.1 157150639 5598235 455027..456310 1 NC_009785.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 456310 tig 5598235 tig Streptococcus gordonii str. Challis substr. CH1 trigger factor YP_001449728.1 455027 D 467705 CDS YP_001449729.1 157151221 5598854 456471..457058 1 NC_009785.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 457058 5598854 SGO_0413 Streptococcus gordonii str. Challis substr. CH1 DNA-directed RNA polymerase subunit delta YP_001449729.1 456471 D 467705 CDS YP_001449730.1 157150756 5597736 457209..457895 1 NC_009785.1 hypothetical protein 457895 5597736 SGO_0414 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449730.1 457209 D 467705 CDS YP_001449731.1 157151569 5598646 458246..460762 1 NC_009785.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 460762 secA 5598646 secA Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit SecA YP_001449731.1 458246 D 467705 CDS YP_001449732.1 157150956 5598922 460785..461816 1 NC_009785.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 461816 5598922 SGO_0416 Streptococcus gordonii str. Challis substr. CH1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001449732.1 460785 D 467705 CDS YP_001449733.1 157151675 5598264 461860..462294 1 NC_009785.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 462294 acpS 5598264 acpS Streptococcus gordonii str. Challis substr. CH1 4'-phosphopantetheinyl transferase YP_001449733.1 461860 D 467705 CDS YP_001449734.1 157150127 5597855 462284..463390 1 NC_009785.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 463390 alr 5597855 alr Streptococcus gordonii str. Challis substr. CH1 alanine racemase YP_001449734.1 462284 D 467705 CDS YP_001449735.1 157150698 5598008 463463..465478 1 NC_009785.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 465478 recG 5598008 recG Streptococcus gordonii str. Challis substr. CH1 ATP-dependent DNA helicase RecG YP_001449735.1 463463 D 467705 CDS YP_001449736.1 157150699 5598745 465516..465638 1 NC_009785.1 hypothetical protein 465638 5598745 SGO_0420 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449736.1 465516 D 467705 CDS YP_001449737.1 157151385 5598743 465900..467942 1 NC_009785.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 467942 5598743 SGO_0421 Streptococcus gordonii str. Challis substr. CH1 phosphotransferase system mannitol/fructose-specific IIA domain-containing protein YP_001449737.1 465900 D 467705 CDS YP_001449738.1 157149902 5597905 467935..468216 1 NC_009785.1 identified by match to protein family HMM PF02302; PTS system lactose family IIB subunit 468216 5597905 SGO_0422 Streptococcus gordonii str. Challis substr. CH1 PTS system lactose family IIB subunit YP_001449738.1 467935 D 467705 CDS YP_001449739.1 157150334 5598130 468242..469528 1 NC_009785.1 identified by match to protein family HMM PF04215; putative sugar-specific permease 469528 5598130 SGO_0423 Streptococcus gordonii str. Challis substr. CH1 putative sugar-specific permease YP_001449739.1 468242 D 467705 CDS YP_001449740.1 157149883 5599420 469528..470214 1 NC_009785.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha 470214 trpA-1 5599420 trpA-1 Streptococcus gordonii str. Challis substr. CH1 tryptophan synthase subunit alpha YP_001449740.1 469528 D 467705 CDS YP_001449741.1 157150212 5598885 complement(470394..471356) 1 NC_009785.1 identified by match to protein family HMM PF00710; asparaginase 471356 ansB 5598885 ansB Streptococcus gordonii str. Challis substr. CH1 asparaginase YP_001449741.1 470394 R 467705 CDS YP_001449742.1 157150141 5599007 471420..472811 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 472811 5599007 SGO_0426 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001449742.1 471420 D 467705 CDS YP_001449743.1 157150470 5599488 complement(472849..473301) 1 NC_009785.1 identified by match to protein family HMM PF00582; universal stress protein 473301 5599488 SGO_0427 Streptococcus gordonii str. Challis substr. CH1 universal stress protein YP_001449743.1 472849 R 467705 CDS YP_001449744.1 157150285 5599168 473531..473653 1 NC_009785.1 hypothetical protein 473653 5599168 SGO_0428 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449744.1 473531 D 467705 CDS YP_001449745.1 157151628 5598692 473692..474906 1 NC_009785.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 474906 5598692 SGO_0429 Streptococcus gordonii str. Challis substr. CH1 aminotransferase AlaT YP_001449745.1 473692 D 467705 CDS YP_001449746.1 157151454 5598018 475283..477943 1 NC_009785.1 identified by match to protein family HMM TIGR01167; LPXTG cell wall surface protein 477943 5598018 SGO_0430 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001449746.1 475283 D 467705 CDS YP_001449747.1 157149713 5599702 478229..479017 1 NC_009785.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 479017 5599702 SGO_0431 Streptococcus gordonii str. Challis substr. CH1 transcriptional repressor CodY YP_001449747.1 478229 D 467705 CDS YP_001449748.1 157150515 5599248 479017..479574 1 NC_009785.1 identified by match to protein family HMM PF00857; isochorismatase family protein 479574 entB 5599248 entB Streptococcus gordonii str. Challis substr. CH1 isochorismatase family protein YP_001449748.1 479017 D 467705 CDS YP_001449749.1 157150869 5599078 complement(479571..479696) 1 NC_009785.1 hypothetical protein 479696 5599078 SGO_0433 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449749.1 479571 R 467705 CDS YP_001449750.1 157151355 5598431 479974..481710 1 NC_009785.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 481710 aspS 5598431 aspS Streptococcus gordonii str. Challis substr. CH1 aspartyl-tRNA synthetase YP_001449750.1 479974 D 467705 CDS YP_001449751.1 157149759 5597890 481914..482216 1 NC_009785.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 482216 gatC 5597890 gatC Streptococcus gordonii str. Challis substr. CH1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001449751.1 481914 D 467705 CDS YP_001449752.1 157149892 5599712 482216..483682 1 NC_009785.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 483682 gatA 5599712 gatA Streptococcus gordonii str. Challis substr. CH1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001449752.1 482216 D 467705 CDS YP_001449753.1 157150996 5598553 483682..485115 1 NC_009785.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 485115 gatB 5598553 gatB Streptococcus gordonii str. Challis substr. CH1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001449753.1 483682 D 467705 CDS YP_001449754.1 157151572 5598176 485184..485984 1 NC_009785.1 hypothetical protein 485984 5598176 SGO_0438 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449754.1 485184 D 467705 CDS YP_001449755.1 157150077 5598894 486077..486370 1 NC_009785.1 hypothetical protein 486370 5598894 SGO_0439 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449755.1 486077 D 467705 CDS YP_001449756.1 157150058 5597762 486602..487648 1 NC_009785.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-iditol 2-dehydrogenase 487648 5597762 SGO_0440 Streptococcus gordonii str. Challis substr. CH1 L-iditol 2-dehydrogenase YP_001449756.1 486602 D 467705 CDS YP_001449757.1 157150654 5598276 487747..488658 1 NC_009785.1 identified by match to protein family HMM PF00892; membrane protein 488658 5598276 SGO_0441 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001449757.1 487747 D 467705 CDS YP_001449758.1 157150784 5598834 complement(488718..489344) 1 NC_009785.1 identified by match to protein family HMM PF09335; immunoreactive protein Se23.5-like protein 489344 5598834 SGO_0442 Streptococcus gordonii str. Challis substr. CH1 immunoreactive protein Se23.5-like protein YP_001449758.1 488718 R 467705 CDS YP_001449759.1 157151372 5598602 489713..490195 1 NC_009785.1 hypothetical protein 490195 5598602 SGO_0443 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449759.1 489713 D 467705 CDS YP_001449760.1 157149796 5598125 490406..490915 1 NC_009785.1 identified by match to protein family HMM TIGR01549; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD family phosphatase 490915 5598125 SGO_0444 Streptococcus gordonii str. Challis substr. CH1 HAD family phosphatase YP_001449760.1 490406 D 467705 CDS YP_001449761.1 157149789 5599558 490918..492024 1 NC_009785.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 492024 5599558 SGO_0445 Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein YqeH YP_001449761.1 490918 D 467705 CDS YP_001449762.1 157150382 5599494 492132..492443 1 NC_009785.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 492443 5599494 SGO_0446 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449762.1 492132 D 467705 CDS YP_001449763.1 157150990 5599341 492472..493104 1 NC_009785.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 493104 nadD 5599341 nadD Streptococcus gordonii str. Challis substr. CH1 nicotinic acid mononucleotide adenylyltransferase YP_001449763.1 492472 D 467705 CDS YP_001449764.1 157151688 5598197 493101..493700 1 NC_009785.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein 493700 5598197 SGO_0448 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449764.1 493101 D 467705 CDS YP_001449765.1 157150596 5598565 493697..494200 1 NC_009785.1 identified by match to protein family HMM PF00857; isochorismatase family protein 494200 5598565 SGO_0449 Streptococcus gordonii str. Challis substr. CH1 isochorismatase family protein YP_001449765.1 493697 D 467705 CDS YP_001449766.1 157150230 5598933 494210..494575 1 NC_009785.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-like protein 494575 5598933 SGO_0450 Streptococcus gordonii str. Challis substr. CH1 iojap-like protein YP_001449766.1 494210 D 467705 CDS YP_001449767.1 157150734 5597909 494651..495385 1 NC_009785.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 495385 5597909 SGO_0451 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001449767.1 494651 D 467705 CDS YP_001449768.1 157151466 5598682 495387..496478 1 NC_009785.1 identified by match to protein family HMM PF05636; hypothetical protein 496478 5598682 SGO_0452 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449768.1 495387 D 467705 CDS YP_001449769.1 157151497 5598819 496549..497379 1 NC_009785.1 putative lipoprotein 497379 5598819 SGO_0453 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449769.1 496549 D 467705 CDS YP_001449770.1 157151427 5599096 497609..498325 1 NC_009785.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 498325 5599096 SGO_0454 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449770.1 497609 D 467705 CDS YP_001449771.1 157151070 5598403 498446..499555 1 NC_009785.1 putative lipoprotein 499555 5598403 SGO_0455 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001449771.1 498446 D 467705 CDS YP_001449772.1 157150635 5598011 499666..500799 1 NC_009785.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amino acid aminohydrolase 500799 ILL5 5598011 ILL5 Streptococcus gordonii str. Challis substr. CH1 amino acid aminohydrolase YP_001449772.1 499666 D 467705 CDS YP_001449773.1 157149654 5598863 500988..501845 1 NC_009785.1 ABC transporter protein SP0148; identified by match to protein family HMM PF00497; putative amino-acid-binding protein 501845 5598863 SGO_0457 Streptococcus gordonii str. Challis substr. CH1 putative amino-acid-binding protein YP_001449773.1 500988 D 467705 CDS YP_001449774.1 157151656 5598617 501879..502742 1 NC_009785.1 identified by match to protein family HMM PF03180; lipoprotein 502742 hlpA 5598617 hlpA Streptococcus gordonii str. Challis substr. CH1 lipoprotein YP_001449774.1 501879 D 467705 CDS YP_001449775.1 157150277 5599335 502866..504239 1 NC_009785.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; succinyl-diaminopimelate desuccinylase 504239 5599335 SGO_0459 Streptococcus gordonii str. Challis substr. CH1 succinyl-diaminopimelate desuccinylase YP_001449775.1 502866 D 467705 CDS YP_001449776.1 157150506 5598976 504232..505296 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein SP0151; methionine import ATP-binding protein metN 505296 5598976 SGO_0460 Streptococcus gordonii str. Challis substr. CH1 methionine import ATP-binding protein metN YP_001449776.1 504232 D 467705 CDS YP_001449777.1 157149918 5599100 505298..505990 1 NC_009785.1 identified by match to protein family HMM PF00528; ABC transporter permease 505990 5599100 SGO_0461 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001449777.1 505298 D 467705 CDS YP_001449778.1 157151044 5598498 506027..506254 1 NC_009785.1 hypothetical protein 506254 5598498 SGO_0462 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449778.1 506027 D 467705 CDS YP_001449779.1 157151595 5598064 506199..507875 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein 507875 cydD 5598064 cydD Streptococcus gordonii str. Challis substr. CH1 putative ABC transporter ATP-binding protein YP_001449779.1 506199 D 467705 CDS YP_001449780.1 157149753 5598515 507865..509535 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein 509535 cydC 5598515 cydC Streptococcus gordonii str. Challis substr. CH1 putative ABC transporter ATP-binding protein YP_001449780.1 507865 D 467705 CDS YP_001449781.1 157150119 5599864 509532..510128 1 NC_009785.1 identified by match to protein family HMM TIGR02185; hypothetical protein 510128 5599864 SGO_0465 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449781.1 509532 D 467705 CDS YP_001449782.1 157150668 5599715 510125..510805 1 NC_009785.1 identified by match to protein family HMM PF02361; hypothetical protein 510805 5599715 SGO_0466 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449782.1 510125 D 467705 CDS YP_001449783.1 157150059 5598809 510766..512193 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 512193 5598809 SGO_0467 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001449783.1 510766 D 467705 CDS YP_001449784.1 157149816 5598724 512381..513226 1 NC_009785.1 identified by match to protein family HMM PF01887; match to protein family HMM TIGR03304; hypothetical protein 513226 5598724 SGO_0468 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449784.1 512381 D 467705 CDS YP_001449785.1 157150991 5599636 513250..513810 1 NC_009785.1 identified by match to protein family HMM PF07155; hypothetical protein 513810 5599636 SGO_0469 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449785.1 513250 D 467705 CDS YP_001449786.1 157150303 5598192 513949..514116 1 NC_009785.1 hypothetical protein 514116 5598192 SGO_0470 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449786.1 513949 D 467705 CDS YP_001449787.1 157150600 5599468 514113..514325 1 NC_009785.1 identified by match to protein family HMM PF01381; DNA-binding protein 514325 5599468 SGO_0471 Streptococcus gordonii str. Challis substr. CH1 DNA-binding protein YP_001449787.1 514113 D 467705 CDS YP_001449788.1 157150126 5598927 514608..515105 1 NC_009785.1 hypothetical protein 515105 5598927 SGO_0472 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449788.1 514608 D 467705 CDS YP_001449789.1 157151423 5599827 515222..515620 1 NC_009785.1 hypothetical protein 515620 5599827 SGO_0473 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449789.1 515222 D 467705 CDS YP_001449790.1 157150286 5598497 515617..516294 1 NC_009785.1 identified by match to protein family HMM PF02517; abortive infection protein 516294 5598497 SGO_0474 Streptococcus gordonii str. Challis substr. CH1 abortive infection protein YP_001449790.1 515617 D 467705 CDS YP_001449791.1 157149703 5599489 516304..516792 1 NC_009785.1 hypothetical protein 516792 5599489 SGO_0475 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449791.1 516304 D 467705 CDS YP_001449792.1 157149923 5598039 516920..517906 1 NC_009785.1 identified by match to protein family HMM PF00581; hypothetical protein 517906 5598039 SGO_0476 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449792.1 516920 D 467705 CDS YP_001449793.1 157151669 5599196 complement(518148..519092) 1 NC_009785.1 identified by match to protein family HMM PF01473; cell wall binding protein 519092 5599196 SGO_0477 Streptococcus gordonii str. Challis substr. CH1 cell wall binding protein YP_001449793.1 518148 R 467705 CDS YP_001449794.1 157150883 5597953 complement(519464..520405) 1 NC_009785.1 identified by match to protein family HMM PF01473; cell wall binding protein 520405 5597953 SGO_0478 Streptococcus gordonii str. Challis substr. CH1 cell wall binding protein YP_001449794.1 519464 R 467705 CDS YP_001449795.1 157150201 5598400 520893..521696 1 NC_009785.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 521696 5598400 SGO_0479 Streptococcus gordonii str. Challis substr. CH1 AraC family transcriptional regulator YP_001449795.1 520893 D 467705 CDS YP_001449796.1 157151589 5598129 521753..522166 1 NC_009785.1 identified by match to protein family HMM PF06983; hypothetical protein 522166 5598129 SGO_0480 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449796.1 521753 D 467705 CDS YP_001449797.1 157150063 5598604 522176..522535 1 NC_009785.1 hypothetical protein 522535 5598604 SGO_0481 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449797.1 522176 D 467705 CDS YP_001449798.1 157149938 5599429 522962..523582 1 NC_009785.1 identified by match to protein family HMM PF01965; ThiJ/PfpI family protein 523582 5599429 SGO_0482 Streptococcus gordonii str. Challis substr. CH1 ThiJ/PfpI family protein YP_001449798.1 522962 D 467705 CDS YP_001449799.1 157149793 5599449 523732..524640 1 NC_009785.1 hypothetical protein 524640 5599449 SGO_0483 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449799.1 523732 D 467705 CDS YP_001449800.1 157150977 5599881 complement(524793..526025) 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 526025 5599881 SGO_0484 Streptococcus gordonii str. Challis substr. CH1 sensor histidine kinase YP_001449800.1 524793 R 467705 CDS YP_001449801.1 157151302 5598230 complement(526015..526701) 1 NC_009785.1 identified by match to protein family HMM PF00072; DNA-binding response regulator 526701 5598230 SGO_0485 Streptococcus gordonii str. Challis substr. CH1 DNA-binding response regulator YP_001449801.1 526015 R 467705 CDS YP_001449802.1 157149811 5599730 complement(526705..527331) 1 NC_009785.1 identified by match to protein family HMM PF04607; GTP pyrophosphokinase family protein 527331 5599730 SGO_0486 Streptococcus gordonii str. Challis substr. CH1 GTP pyrophosphokinase family protein YP_001449802.1 526705 R 467705 CDS YP_001449803.1 157151159 5598503 527547..528308 1 NC_009785.1 phosphorylase Pnp/Udp family protein 528308 5598503 SGO_0487 Streptococcus gordonii str. Challis substr. CH1 phosphorylase Pnp/Udp family protein YP_001449803.1 527547 D 467705 CDS YP_001449804.1 157150140 5597850 528319..530004 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF00005; putative ABC transporter ATP-binding protein SP0483 530004 5597850 SGO_0488 Streptococcus gordonii str. Challis substr. CH1 putative ABC transporter ATP-binding protein SP0483 YP_001449804.1 528319 D 467705 CDS YP_001449805.1 157150136 5599038 529991..530827 1 NC_009785.1 identified by match to protein family HMM PF02361; cobalt transport family protein 530827 5599038 SGO_0489 Streptococcus gordonii str. Challis substr. CH1 cobalt transport family protein YP_001449805.1 529991 D 467705 CDS YP_001449806.1 157151502 5599662 530847..531707 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 531707 5599662 SGO_0490 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001449806.1 530847 D 467705 CDS YP_001449807.1 157151065 5599107 complement(531784..532497) 1 NC_009785.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 532497 gidB 5599107 gidB Streptococcus gordonii str. Challis substr. CH1 16S rRNA methyltransferase GidB YP_001449807.1 531784 R 467705 CDS YP_001449808.1 157149820 5598024 complement(532576..533865) 1 NC_009785.1 identified by match to protein family HMM PF07690; macrolide-efflux protein 533865 5598024 SGO_0492 Streptococcus gordonii str. Challis substr. CH1 macrolide-efflux protein YP_001449808.1 532576 R 467705 CDS YP_001449809.1 157149781 5599690 complement(533878..534480) 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 534480 5599690 SGO_0493 Streptococcus gordonii str. Challis substr. CH1 TetR family transcriptional regulator YP_001449809.1 533878 R 467705 CDS YP_001449810.1 157149978 5598994 534696..535265 1 NC_009785.1 identified by match to protein family HMM PF04011; LemA-like protein 535265 lemA 5598994 lemA Streptococcus gordonii str. Challis substr. CH1 LemA-like protein YP_001449810.1 534696 D 467705 CDS YP_001449811.1 157151491 5597852 535267..536160 1 NC_009785.1 putative metalloprotease; heat shock protein HtpX 536160 htpx 5597852 htpx Streptococcus gordonii str. Challis substr. CH1 heat shock protein HtpX YP_001449811.1 535267 D 467705 CDS YP_001449812.1 157151127 5599746 536544..537437 1 NC_009785.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; transcriptional regulator Rgg 537437 rgg 5599746 rgg Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator Rgg YP_001449812.1 536544 D 467705 CDS YP_001449813.1 157150042 5597906 537504..542234 1 NC_009785.1 identified by match to protein family HMM PF01473; match to protein family HMM PF02324; glucosyltransferase G 542234 gtfG 5597906 gtfG Streptococcus gordonii str. Challis substr. CH1 glucosyltransferase G YP_001449813.1 537504 D 467705 CDS YP_001449814.1 157150729 5599331 complement(542385..543620) 1 NC_009785.1 identified by match to protein family HMM PF07690; putative permease 543620 dsg 5599331 dsg Streptococcus gordonii str. Challis substr. CH1 putative permease YP_001449814.1 542385 R 467705 CDS YP_001449815.1 157150293 5598693 543638..543760 1 NC_009785.1 hypothetical protein 543760 5598693 SGO_0499 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449815.1 543638 D 467705 CDS YP_001449816.1 157151515 5599480 complement(543960..544829) 1 NC_009785.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; putative transcriptional regulator RggD 544829 rggD 5599480 rggD Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator RggD YP_001449816.1 543960 R 467705 CDS YP_001449817.1 157151072 5599240 544928..545458 1 NC_009785.1 identified by match to protein family HMM PF02620; hypothetical protein 545458 5599240 SGO_0501 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449817.1 544928 D 467705 CDS YP_001449818.1 157151088 5598009 545561..547042 1 NC_009785.1 identified by match to protein family HMM PF01145; match to protein family HMM PF03149; flotillin-like protein 547042 floL 5598009 floL Streptococcus gordonii str. Challis substr. CH1 flotillin-like protein YP_001449818.1 545561 D 467705 CDS YP_001449819.1 157150360 5597967 547178..548602 1 NC_009785.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 548602 gnd 5597967 gnd Streptococcus gordonii str. Challis substr. CH1 6-phosphogluconate dehydrogenase YP_001449819.1 547178 D 467705 CDS YP_001449820.1 157149907 5599379 548615..549304 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 549304 5599379 SGO_0504 Streptococcus gordonii str. Challis substr. CH1 DNA-binding response regulator YP_001449820.1 548615 D 467705 CDS YP_001449821.1 157151273 5598190 549664..551856 1 NC_009785.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003; PTS system transporter subunit IIBC 551856 5598190 SGO_0505 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIBC YP_001449821.1 549664 D 467705 CDS YP_001449822.1 157151235 5599801 551874..552689 1 NC_009785.1 identified by match to protein family HMM PF03372; RgfB 552689 rgfB 5599801 rgfB Streptococcus gordonii str. Challis substr. CH1 RgfB YP_001449822.1 551874 D 467705 CDS YP_001449823.1 157150356 5599302 complement(552832..553248) 1 NC_009785.1 hypothetical protein 553248 5599302 SGO_0507 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449823.1 552832 R 467705 CDS YP_001449824.1 157150290 5599385 553427..553900 1 NC_009785.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 553900 nrdR 5599385 nrdR Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator NrdR YP_001449824.1 553427 D 467705 CDS YP_001449825.1 157149659 5599484 553901..555055 1 NC_009785.1 identified by match to protein family HMM PF07261; replication initiation and membrane attachment protein DnaB 555055 5599484 SGO_0509 Streptococcus gordonii str. Challis substr. CH1 replication initiation and membrane attachment protein DnaB YP_001449825.1 553901 D 467705 CDS YP_001449826.1 157151701 5598597 555056..555955 1 NC_009785.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 555955 dnaI 5598597 dnaI Streptococcus gordonii str. Challis substr. CH1 primosomal protein DnaI YP_001449826.1 555056 D 467705 CDS YP_001449827.1 157150735 5598342 555952..556668 1 NC_009785.1 identified by match to protein family HMM PF00881; NADPH-flavin oxidoreductase -like protein 556668 5598342 SGO_0511 Streptococcus gordonii str. Challis substr. CH1 NADPH-flavin oxidoreductase -like protein YP_001449827.1 555952 D 467705 CDS YP_001449828.1 157150518 5598681 556711..558021 1 NC_009785.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 558021 engA 5598681 engA Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein EngA YP_001449828.1 556711 D 467705 CDS YP_001449829.1 157150075 5599074 558348..561437 1 NC_009785.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455; Snf2 family protein 561437 5599074 SGO_0513 Streptococcus gordonii str. Challis substr. CH1 Snf2 family protein YP_001449829.1 558348 D 467705 CDS YP_001449830.1 157150887 5598303 561552..562139 1 NC_009785.1 hypothetical protein 562139 5598303 SGO_0514 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449830.1 561552 D 467705 CDS YP_001449831.1 157150961 5598395 562296..563627 1 NC_009785.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 563627 murC 5598395 murC Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylmuramate--L-alanine ligase YP_001449831.1 562296 D 467705 CDS YP_001449832.1 157150431 5598256 563640..564149 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 564149 5598256 SGO_0516 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449832.1 563640 D 467705 CDS YP_001449833.1 157150138 5599236 564153..564653 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 564653 5599236 SGO_0517 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449833.1 564153 D 467705 CDS YP_001449834.1 157151343 5599696 564729..566360 1 NC_009785.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; aminodeoxychorismate lyase-like protein 566360 5599696 SGO_0518 Streptococcus gordonii str. Challis substr. CH1 aminodeoxychorismate lyase-like protein YP_001449834.1 564729 D 467705 CDS YP_001449835.1 157150808 5598798 566458..566940 1 NC_009785.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 566940 greA 5598798 greA Streptococcus gordonii str. Challis substr. CH1 transcription elongation factor GreA YP_001449835.1 566458 D 467705 CDS YP_001449836.1 157150467 5598548 566988..567092 1 NC_009785.1 hypothetical protein 567092 5598548 SGO_0520 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449836.1 566988 D 467705 CDS YP_001449837.1 157149880 5599176 complement(567641..568573) 1 NC_009785.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor 568573 5599176 SGO_0521 Streptococcus gordonii str. Challis substr. CH1 OxaA-like protein precursor YP_001449837.1 567641 R 467705 CDS YP_001449838.1 157151118 5598896 complement(568650..568928) 1 NC_009785.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 568928 5598896 SGO_0522 Streptococcus gordonii str. Challis substr. CH1 acylphosphatase YP_001449838.1 568650 R 467705 CDS YP_001449839.1 157150531 5597916 568997..569737 1 NC_009785.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; spoU rRNA methylase family protein 569737 5597916 SGO_0523 Streptococcus gordonii str. Challis substr. CH1 spoU rRNA methylase family protein YP_001449839.1 568997 D 467705 CDS YP_001449840.1 157150222 5599050 569782..570273 1 NC_009785.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein 570273 5599050 SGO_0524 Streptococcus gordonii str. Challis substr. CH1 HD domain-containing protein YP_001449840.1 569782 D 467705 CDS YP_001449841.1 157151682 5599612 570291..570977 1 NC_009785.1 identified by match to protein family HMM PF01027; membrane protein 570977 5599612 SGO_0525 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001449841.1 570291 D 467705 CDS YP_001449842.1 157149946 5599164 571447..573162 1 NC_009785.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase catalytic subunit 573162 ilvB 5599164 ilvB Streptococcus gordonii str. Challis substr. CH1 acetolactate synthase catalytic subunit YP_001449842.1 571447 D 467705 CDS YP_001449843.1 157150415 5598205 573155..573631 1 NC_009785.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 573631 ilvH 5598205 ilvH Streptococcus gordonii str. Challis substr. CH1 acetolactate synthase 3 regulatory subunit YP_001449843.1 573155 D 467705 CDS YP_001449844.1 157150893 5599266 573723..574745 1 NC_009785.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 574745 ilvC 5599266 ilvC Streptococcus gordonii str. Challis substr. CH1 ketol-acid reductoisomerase YP_001449844.1 573723 D 467705 CDS YP_001449845.1 157151328 5598387 574932..576182 1 NC_009785.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 576182 ilvA 5598387 ilvA Streptococcus gordonii str. Challis substr. CH1 threonine dehydratase YP_001449845.1 574932 D 467705 CDS YP_001449846.1 157150084 5598977 complement(576332..577144) 1 NC_009785.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 577144 5598977 SGO_0530 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001449846.1 576332 R 467705 CDS YP_001449847.1 157150670 5598931 577305..577907 1 NC_009785.1 identified by match to protein family HMM PF07099; hypothetical protein 577907 5598931 SGO_0531 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449847.1 577305 D 467705 CDS YP_001449848.1 157150055 5598804 578013..579437 1 NC_009785.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 579437 5598804 SGO_0532 Streptococcus gordonii str. Challis substr. CH1 xanthine/uracil permease family protein YP_001449848.1 578013 D 467705 CDS YP_001449849.1 157150642 5599337 579484..579966 1 NC_009785.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 579966 5599337 SGO_0533 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449849.1 579484 D 467705 CDS YP_001449850.1 157150968 5598850 579984..580490 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 580490 5598850 SGO_0534 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449850.1 579984 D 467705 CDS YP_001449851.1 157151583 5598244 580497..581708 1 NC_009785.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; putative transcriptional regulator LytR 581708 5598244 SGO_0535 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator LytR YP_001449851.1 580497 D 467705 CDS YP_001449852.1 157151657 5598711 complement(581756..582058) 1 NC_009785.1 hypothetical protein 582058 5598711 SGO_0536 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449852.1 581756 R 467705 CDS YP_001449853.1 157149899 5597989 complement(582069..582590) 1 NC_009785.1 identified by match to protein family HMM PF01230; HIT family protein 582590 5597989 SGO_0537 Streptococcus gordonii str. Challis substr. CH1 HIT family protein YP_001449853.1 582069 R 467705 CDS YP_001449854.1 157150503 5599705 582624..583355 1 NC_009785.1 identified by match to protein family HMM PF00005; ATP-binding protein SP0522; ABC-type transporter ATP-binding protein 583355 5599705 SGO_0538 Streptococcus gordonii str. Challis substr. CH1 ABC-type transporter ATP-binding protein YP_001449854.1 582624 D 467705 CDS YP_001449855.1 157150790 5599104 583352..584407 1 NC_009785.1 identified by match to protein family HMM PF05975; ABC transporter permease 584407 5599104 SGO_0539 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001449855.1 583352 D 467705 CDS YP_001449856.1 157151413 5598592 584448..585242 1 NC_009785.1 identified by match to protein family HMM PF01636; hypothetical protein 585242 5598592 SGO_0540 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449856.1 584448 D 467705 CDS YP_001449857.1 157150764 5599679 585239..585877 1 NC_009785.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 585877 trmB 5599679 trmB Streptococcus gordonii str. Challis substr. CH1 tRNA (guanine-N(7)-)-methyltransferase YP_001449857.1 585239 D 467705 CDS YP_001449858.1 157151233 5598631 585986..586474 1 NC_009785.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 586474 5598631 SGO_0542 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449858.1 585986 D 467705 CDS YP_001449859.1 157151698 5598564 586520..587761 1 NC_009785.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 587761 nusA 5598564 nusA Streptococcus gordonii str. Challis substr. CH1 transcription elongation factor NusA YP_001449859.1 586520 D 467705 CDS YP_001449860.1 157149910 5599622 587772..588068 1 NC_009785.1 identified by match to protein family HMM PF04296; hypothetical protein 588068 5599622 SGO_0544 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449860.1 587772 D 467705 CDS YP_001449861.1 157150501 5598095 588061..588360 1 NC_009785.1 identified by match to protein family HMM PF01248; hypothetical protein 588360 5598095 SGO_0545 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449861.1 588061 D 467705 CDS YP_001449862.1 157149775 5599109 588378..591239 1 NC_009785.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 591239 infB 5599109 infB Streptococcus gordonii str. Challis substr. CH1 translation initiation factor IF-2 YP_001449862.1 588378 D 467705 CDS YP_001449863.1 157150185 5598281 591425..591772 1 NC_009785.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 591772 rbfA 5598281 rbfA Streptococcus gordonii str. Challis substr. CH1 ribosome-binding factor A YP_001449863.1 591425 D 467705 CDS YP_001449864.1 157149728 5598742 591917..593548 1 NC_009785.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein 593548 5598742 SGO_0548 Streptococcus gordonii str. Challis substr. CH1 Na/Pi-cotransporter family protein YP_001449864.1 591917 D 467705 CDS YP_001449865.1 157151060 5599307 593710..594861 1 NC_009785.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 594861 nagA 5599307 nagA Streptococcus gordonii str. Challis substr. CH1 N-acetylglucosamine-6-phosphate deacetylase YP_001449865.1 593710 D 467705 CDS YP_001449866.1 157150599 5598030 594836..594982 1 NC_009785.1 hypothetical protein 594982 5598030 SGO_0550 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449866.1 594836 D 467705 CDS YP_001449867.1 157149889 5598928 595013..595210 1 NC_009785.1 hypothetical protein 595210 5598928 SGO_0551 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449867.1 595013 D 467705 CDS YP_001449868.1 157151509 5599708 595290..596135 1 NC_009785.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 596135 5599708 SGO_0552 Streptococcus gordonii str. Challis substr. CH1 aldo/keto reductase family oxidoreductase YP_001449868.1 595290 D 467705 CDS YP_001449869.1 157151016 5599736 596136..596588 1 NC_009785.1 acetyltransferase 596588 5599736 SGO_0553 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449869.1 596136 D 467705 CDS YP_001449870.1 157150458 5598123 596725..599712 1 NC_009785.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease 599712 hsdR 5598123 hsdR Streptococcus gordonii str. Challis substr. CH1 type I site-specific deoxyribonuclease YP_001449870.1 596725 D 467705 CDS YP_001449871.1 157150667 5599188 599723..600574 1 NC_009785.1 hypothetical protein 600574 5599188 SGO_0555 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449871.1 599723 D 467705 CDS YP_001449872.1 157151097 5598812 600516..602996 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DNA helicase-like protein 602996 5598812 SGO_0556 Streptococcus gordonii str. Challis substr. CH1 DNA helicase-like protein YP_001449872.1 600516 D 467705 CDS YP_001449873.1 157151665 5597951 603001..604209 1 NC_009785.1 identified by match to protein family HMM PF01420; HsdS specificity protein of type I restriction-modification system 604209 5597951 SGO_0557 Streptococcus gordonii str. Challis substr. CH1 HsdS specificity protein of type I restriction-modification system YP_001449873.1 603001 D 467705 CDS YP_001449874.1 157151090 5597828 604233..604997 1 NC_009785.1 hypothetical protein 604997 5597828 SGO_0558 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449874.1 604233 D 467705 CDS YP_001449875.1 157150475 5597961 605068..605946 1 NC_009785.1 hypothetical protein 605946 5597961 SGO_0559 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449875.1 605068 D 467705 CDS YP_001449876.1 157151457 5599158 605957..607564 1 NC_009785.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 607564 hsdM 5599158 hsdM Streptococcus gordonii str. Challis substr. CH1 type I restriction-modification system, M subunit YP_001449876.1 605957 D 467705 CDS YP_001449877.1 157150876 5598769 607694..608032 1 NC_009785.1 hypothetical protein 608032 5598769 SGO_0561 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449877.1 607694 D 467705 CDS YP_001449878.1 157150400 5598423 608025..609110 1 NC_009785.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114; match to protein family HMM TIGR02607; helix-turn-helix domain-containing protein 609110 5598423 SGO_0562 Streptococcus gordonii str. Challis substr. CH1 helix-turn-helix domain-containing protein YP_001449878.1 608025 D 467705 CDS YP_001449879.1 157150149 5599301 609295..609480 1 NC_009785.1 hypothetical protein 609480 5599301 SGO_0563 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449879.1 609295 D 467705 CDS YP_001449880.1 157151304 5599731 609493..609858 1 NC_009785.1 identified by match to protein family HMM TIGR02328; hypothetical protein 609858 5599731 SGO_0564 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449880.1 609493 D 467705 CDS YP_001449881.1 157151475 5597825 complement(610155..611177) 1 NC_009785.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 611177 adhA 5597825 adhA Streptococcus gordonii str. Challis substr. CH1 alcohol dehydrogenase YP_001449881.1 610155 R 467705 CDS YP_001449882.1 157151605 5598916 611500..616041 1 NC_009785.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM PF07554; match to protein family HMM TIGR01168; serine protease challisin 616041 sgc 5598916 sgc Streptococcus gordonii str. Challis substr. CH1 serine protease challisin YP_001449882.1 611500 D 467705 CDS YP_001449883.1 157151613 5599093 616290..616382 1 NC_009785.1 hypothetical protein 616382 5599093 SGO_0567 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449883.1 616290 D 467705 CDS YP_001449884.1 157151149 5598231 616401..617318 1 NC_009785.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 617318 glyQ 5598231 glyQ Streptococcus gordonii str. Challis substr. CH1 glycyl-tRNA synthetase subunit alpha YP_001449884.1 616401 D 467705 CDS YP_001449885.1 157150548 5597865 617321..619360 1 NC_009785.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 619360 glyS 5597865 glyS Streptococcus gordonii str. Challis substr. CH1 glycyl-tRNA synthetase subunit beta YP_001449885.1 617321 D 467705 CDS YP_001449886.1 157151398 5599019 619383..619640 1 NC_009785.1 identified by match to protein family HMM PF05979; hypothetical protein 619640 5599019 SGO_0570 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449886.1 619383 D 467705 CDS YP_001449887.1 157150421 5598332 complement(619855..620394) 1 NC_009785.1 hypothetical protein 620394 5598332 SGO_0571 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449887.1 619855 R 467705 CDS YP_001449888.1 157149688 5599252 complement(620440..620655) 1 NC_009785.1 identified by match to protein family HMM PF01381; transcriptional regulator 620655 5599252 SGO_0572 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001449888.1 620440 R 467705 CDS YP_001449889.1 157151600 5598219 620840..621790 1 NC_009785.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 621790 mraW 5598219 mraW Streptococcus gordonii str. Challis substr. CH1 S-adenosyl-methyltransferase MraW YP_001449889.1 620840 D 467705 CDS YP_001449890.1 157151162 5598470 621799..622119 1 NC_009785.1 identified by match to protein family HMM TIGR02209; cell division protein FtsL 622119 ftsL 5598470 ftsL Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsL YP_001449890.1 621799 D 467705 CDS YP_001449891.1 157151171 5597846 622123..624378 1 NC_009785.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 2X 624378 pbp2X 5597846 pbp2X Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 2X YP_001449891.1 622123 D 467705 CDS YP_001449892.1 157151049 5597831 624380..625363 1 NC_009785.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 625363 mraY 5597831 mraY Streptococcus gordonii str. Challis substr. CH1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001449892.1 624380 D 467705 CDS YP_001449893.1 157149988 5598055 625463..626806 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 626806 5598055 SGO_0577 Streptococcus gordonii str. Challis substr. CH1 ATP-dependent RNA helicase YP_001449893.1 625463 D 467705 CDS YP_001449894.1 157151612 5599583 626976..627785 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 627785 5599583 SGO_0578 Streptococcus gordonii str. Challis substr. CH1 amino acid ABC transporter permease YP_001449894.1 626976 D 467705 CDS YP_001449895.1 157151180 5598280 627785..628528 1 NC_009785.1 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP binding protein 628528 5598280 SGO_0579 Streptococcus gordonii str. Challis substr. CH1 amino acid ABC transporter ATP binding protein YP_001449895.1 627785 D 467705 CDS YP_001449896.1 157150758 5597812 628634..628858 1 NC_009785.1 hypothetical protein 628858 5597812 SGO_0580 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449896.1 628634 D 467705 CDS YP_001449897.1 157149758 5598642 628922..629836 1 NC_009785.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 629836 trxB 5598642 trxB Streptococcus gordonii str. Challis substr. CH1 thioredoxin-disulfide reductase YP_001449897.1 628922 D 467705 CDS YP_001449898.1 157151382 5598778 630049..631509 1 NC_009785.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 631509 5598778 SGO_0582 Streptococcus gordonii str. Challis substr. CH1 nicotinate phosphoribosyltransferase YP_001449898.1 630049 D 467705 CDS YP_001449899.1 157150890 5598183 631506..632330 1 NC_009785.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 632330 nadE 5598183 nadE Streptococcus gordonii str. Challis substr. CH1 NAD synthetase YP_001449899.1 631506 D 467705 CDS YP_001449900.1 157150476 5598390 632378..632938 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 632938 5598390 SGO_0584 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449900.1 632378 D 467705 CDS YP_001449901.1 157151507 5599156 633017..634351 1 NC_009785.1 identified by match to protein family HMM PF03051; aminopeptidase C 634351 pepC 5599156 pepC Streptococcus gordonii str. Challis substr. CH1 aminopeptidase C YP_001449901.1 633017 D 467705 CDS YP_001449902.1 157149812 5599735 complement(634463..636601) 1 NC_009785.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 636601 pbp1a 5599735 pbp1a Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 1A YP_001449902.1 634463 R 467705 CDS YP_001449903.1 157150740 5598666 complement(636594..637196) 1 NC_009785.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 637196 recU 5598666 recU Streptococcus gordonii str. Challis substr. CH1 Holliday junction-specific endonuclease YP_001449903.1 636594 R 467705 CDS YP_001449904.1 157149924 5598675 637262..637789 1 NC_009785.1 identified by match to protein family HMM PF06908; hypothetical protein 637789 5598675 SGO_0588 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449904.1 637262 D 467705 CDS YP_001449905.1 157150616 5599149 637859..638209 1 NC_009785.1 identified by match to protein family HMM PF05103; methylase 638209 5599149 SGO_0589 Streptococcus gordonii str. Challis substr. CH1 methylase YP_001449905.1 637859 D 467705 CDS YP_001449906.1 157151512 5598898 638750..639916 1 NC_009785.1 identified by match to protein family HMM PF01170; methyltransferase 639916 5598898 SGO_0590 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001449906.1 638750 D 467705 CDS YP_001449907.1 157149680 5599125 639919..641325 1 NC_009785.1 hypothetical protein 641325 5599125 SGO_0591 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449907.1 639919 D 467705 CDS YP_001449908.1 157150259 5598322 complement(641386..641868) 1 NC_009785.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 641868 luxS 5598322 luxS Streptococcus gordonii str. Challis substr. CH1 S-ribosylhomocysteinase YP_001449908.1 641386 R 467705 CDS YP_001449909.1 157150832 5599623 642100..643707 1 NC_009785.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319; hypothetical protein 643707 5599623 SGO_0593 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449909.1 642100 D 467705 CDS YP_001449910.1 157151617 5598507 643822..644448 1 NC_009785.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 644448 gmk 5598507 gmk Streptococcus gordonii str. Challis substr. CH1 guanylate kinase YP_001449910.1 643822 D 467705 CDS YP_001449911.1 157150001 5599641 644476..644787 1 NC_009785.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 644787 5599641 SGO_0595 Streptococcus gordonii str. Challis substr. CH1 DNA-directed RNA polymerase subunit omega YP_001449911.1 644476 D 467705 CDS YP_001449912.1 157150480 5599483 644908..647289 1 NC_009785.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 647289 priA 5599483 priA Streptococcus gordonii str. Challis substr. CH1 primosome assembly protein PriA YP_001449912.1 644908 D 467705 CDS YP_001449913.1 157151389 5599147 647302..648237 1 NC_009785.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 648237 fmt 5599147 fmt Streptococcus gordonii str. Challis substr. CH1 methionyl-tRNA formyltransferase YP_001449913.1 647302 D 467705 CDS YP_001449914.1 157149881 5598258 648227..649540 1 NC_009785.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 649540 sun 5598258 sun Streptococcus gordonii str. Challis substr. CH1 sun protein YP_001449914.1 648227 D 467705 CDS YP_001449915.1 157150315 5598891 649561..650301 1 NC_009785.1 identified by match to protein family HMM PF00481; phosphoprotein phosphatase 650301 5598891 SGO_0599 Streptococcus gordonii str. Challis substr. CH1 phosphoprotein phosphatase YP_001449915.1 649561 D 467705 CDS YP_001449916.1 157150793 5599446 650298..652151 1 NC_009785.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 652151 5599446 SGO_0600 Streptococcus gordonii str. Challis substr. CH1 serine/threonine protein kinase YP_001449916.1 650298 D 467705 CDS YP_001449917.1 157149873 5598585 652325..653023 1 NC_009785.1 hypothetical protein 653023 5598585 SGO_0601 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449917.1 652325 D 467705 CDS YP_001449918.1 157150302 5598914 653068..654021 1 NC_009785.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase 654021 5598914 SGO_0602 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001449918.1 653068 D 467705 CDS YP_001449919.1 157150612 5599469 654011..654655 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 654655 5599469 SGO_0603 Streptococcus gordonii str. Challis substr. CH1 response regulator YP_001449919.1 654011 D 467705 CDS YP_001449920.1 157149839 5598904 654743..656146 1 NC_009785.1 identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; peptidyl-prolyl cis-trans isomerase 656146 5598904 SGO_0604 Streptococcus gordonii str. Challis substr. CH1 peptidyl-prolyl cis-trans isomerase YP_001449920.1 654743 D 467705 CDS YP_001449921.1 157150717 5599818 656143..656529 1 NC_009785.1 identified by match to protein family HMM PF00575; hypothetical protein 656529 5599818 SGO_0605 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449921.1 656143 D 467705 CDS YP_001449922.1 157150624 5598712 complement(656566..657495) 1 NC_009785.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 657495 cysK 5598712 cysK Streptococcus gordonii str. Challis substr. CH1 cysteine synthase A YP_001449922.1 656566 R 467705 CDS YP_001449923.1 157150107 5598877 complement(657593..658240) 1 NC_009785.1 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 658240 5598877 SGO_0607 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449923.1 657593 R 467705 CDS YP_001449924.1 157151166 5598605 658281..659582 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; competence ComFA-like protein 659582 comFA 5598605 comFA Streptococcus gordonii str. Challis substr. CH1 competence ComFA-like protein YP_001449924.1 658281 D 467705 CDS YP_001449925.1 157150610 5597838 659579..660244 1 NC_009785.1 competence protein ComFC 660244 comFC 5597838 comFC Streptococcus gordonii str. Challis substr. CH1 competence protein ComFC YP_001449925.1 659579 D 467705 CDS YP_001449926.1 157149987 5598906 660330..660872 1 NC_009785.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 660872 5598906 SGO_0610 Streptococcus gordonii str. Challis substr. CH1 ribosomal subunit interface protein YP_001449926.1 660330 D 467705 CDS YP_001449927.1 157151459 5598057 complement(667072..667389) 1 NC_009785.1 hypothetical protein 667389 5598057 SGO_0624 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449927.1 667072 R 467705 CDS YP_001449928.1 157150374 5598786 complement(667505..668038) 1 NC_009785.1 identified by match to protein family HMM PF04167; hypothetical protein 668038 5598786 SGO_0625 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449928.1 667505 R 467705 CDS YP_001449929.1 157150335 5599354 complement(668128..668904) 1 NC_009785.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 668904 recX 5599354 recX Streptococcus gordonii str. Challis substr. CH1 recombination regulator RecX YP_001449929.1 668128 R 467705 CDS YP_001449930.1 157151282 5599419 complement(668843..668947) 1 NC_009785.1 hypothetical protein 668947 5599419 SGO_0627 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449930.1 668843 R 467705 CDS YP_001449931.1 157150297 5598149 complement(668931..669731) 1 NC_009785.1 identified by match to protein family HMM PF01636; 3'-aminoglycoside phosphotransferase-like protein 669731 ymdC 5598149 ymdC Streptococcus gordonii str. Challis substr. CH1 3'-aminoglycoside phosphotransferase-like protein YP_001449931.1 668931 R 467705 CDS YP_001449932.1 157149945 5599474 669769..671133 1 NC_009785.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 671133 rumA-1 5599474 rumA-1 Streptococcus gordonii str. Challis substr. CH1 23S rRNA (uracil-5-)-methyltransferase RumA YP_001449932.1 669769 D 467705 CDS YP_001449933.1 157150543 5598789 complement(671333..672037) 1 NC_009785.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 672037 5598789 SGO_0630 Streptococcus gordonii str. Challis substr. CH1 glycerol uptake facilitator protein YP_001449933.1 671333 R 467705 CDS YP_001449934.1 157150514 5599027 complement(672105..673931) 1 NC_009785.1 identified by match to protein family HMM PF01266; alpha-glycerophosphate oxidase 673931 5599027 SGO_0631 Streptococcus gordonii str. Challis substr. CH1 alpha-glycerophosphate oxidase YP_001449934.1 672105 R 467705 CDS YP_001449935.1 157151094 5599080 complement(674000..675508) 1 NC_009785.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 675508 glpK 5599080 glpK Streptococcus gordonii str. Challis substr. CH1 glycerol kinase YP_001449935.1 674000 R 467705 CDS YP_001449936.1 157151252 5597956 complement(675666..677093) 1 NC_009785.1 identified by match to protein family HMM PF05043; hypothetical protein 677093 5597956 SGO_0633 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449936.1 675666 R 467705 CDS YP_001449937.1 157150258 5598265 677347..677577 1 NC_009785.1 identified by match to protein family HMM PF08984; hypothetical protein 677577 5598265 SGO_0634 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449937.1 677347 D 467705 CDS YP_001449938.1 157150073 5599441 677580..678941 1 NC_009785.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282; match to protein family HMM PF08448; hypothetical protein 678941 5599441 SGO_0635 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449938.1 677580 D 467705 CDS YP_001449939.1 157151534 5599394 678959..679222 1 NC_009785.1 identified by match to protein family HMM PF08930; hypothetical protein 679222 5599394 SGO_0636 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449939.1 678959 D 467705 CDS YP_001449940.1 157150978 5599595 679561..680109 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 680109 5599595 SGO_0637 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001449940.1 679561 D 467705 CDS YP_001449941.1 157151551 5598228 680184..681485 1 NC_009785.1 hypothetical protein 681485 5598228 SGO_0638 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449941.1 680184 D 467705 CDS YP_001449942.1 157151226 5599221 681485..684133 1 NC_009785.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 684133 valS 5599221 valS Streptococcus gordonii str. Challis substr. CH1 valyl-tRNA synthetase YP_001449942.1 681485 D 467705 CDS YP_001449943.1 157150737 5599805 684212..685471 1 NC_009785.1 modification methylase 685471 5599805 SGO_0640 Streptococcus gordonii str. Challis substr. CH1 modification methylase YP_001449943.1 684212 D 467705 CDS YP_001449944.1 157150767 5598679 685476..687926 1 NC_009785.1 identified by match to protein family HMM PF02518; hypothetical protein 687926 5598679 SGO_0641 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449944.1 685476 D 467705 CDS YP_001449945.1 157151169 5598628 687913..689673 1 NC_009785.1 hypothetical protein 689673 5598628 SGO_0642 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449945.1 687913 D 467705 CDS YP_001449946.1 157151353 5597834 689697..690917 1 NC_009785.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; cytosine-specific methyltransferase 690917 5597834 SGO_0643 Streptococcus gordonii str. Challis substr. CH1 cytosine-specific methyltransferase YP_001449946.1 689697 D 467705 CDS YP_001449947.1 157149996 5599442 690988..692571 1 NC_009785.1 hypothetical protein 692571 5599442 SGO_0644 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449947.1 690988 D 467705 CDS YP_001449948.1 157150898 5599675 complement(692644..692937) 1 NC_009785.1 hypothetical protein 692937 5599675 SGO_0645 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449948.1 692644 R 467705 CDS YP_001449949.1 157151396 5598378 complement(692915..693289) 1 NC_009785.1 hypothetical protein 693289 5598378 SGO_0646 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449949.1 692915 R 467705 CDS YP_001449950.1 157150216 5599619 complement(693286..694701) 1 NC_009785.1 identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 694701 5599619 SGO_0647 Streptococcus gordonii str. Challis substr. CH1 ImpB/MucB/SamB family protein YP_001449950.1 693286 R 467705 CDS YP_001449951.1 157149913 5599372 complement(694705..695382) 1 NC_009785.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381; putative transcriptional repressor 695382 5599372 SGO_0648 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional repressor YP_001449951.1 694705 R 467705 CDS YP_001449952.1 157150656 5599663 695525..696013 1 NC_009785.1 hypothetical protein 696013 5599663 SGO_0649 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449952.1 695525 D 467705 CDS YP_001449953.1 157151004 5598831 696095..696634 1 NC_009785.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 696634 5598831 SGO_0650 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001449953.1 696095 D 467705 CDS YP_001449954.1 157151694 5598160 696624..697118 1 NC_009785.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 697118 coaD 5598160 coaD Streptococcus gordonii str. Challis substr. CH1 phosphopantetheine adenylyltransferase YP_001449954.1 696624 D 467705 CDS YP_001449955.1 157149964 5598334 697105..698148 1 NC_009785.1 hypothetical protein 698148 5598334 SGO_0652 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449955.1 697105 D 467705 CDS YP_001449956.1 157150838 5599599 698320..698856 1 NC_009785.1 identified by match to protein family HMM PF06265; hypothetical protein 698856 5599599 SGO_0653 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449956.1 698320 D 467705 CDS YP_001449957.1 157151429 5598495 698866..699954 1 NC_009785.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 699954 5598495 SGO_0654 Streptococcus gordonii str. Challis substr. CH1 ribosomal RNA large subunit methyltransferase N YP_001449957.1 698866 D 467705 CDS YP_001449958.1 157150769 5598544 699941..700480 1 NC_009785.1 identified by match to protein family HMM PF04892; VanZF domain-containing protein 700480 5598544 SGO_0655 Streptococcus gordonii str. Challis substr. CH1 VanZF domain-containing protein YP_001449958.1 699941 D 467705 CDS YP_001449959.1 157150677 5598626 700846..702027 1 NC_009785.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 702027 trpB-2 5598626 trpB-2 Streptococcus gordonii str. Challis substr. CH1 tryptophan synthase subunit beta YP_001449959.1 700846 D 467705 CDS YP_001449960.1 157150171 5598793 702430..703788 1 NC_009785.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 703788 trpE 5598793 trpE Streptococcus gordonii str. Challis substr. CH1 anthranilate synthase component I YP_001449960.1 702430 D 467705 CDS YP_001449961.1 157151687 5599116 703785..704348 1 NC_009785.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 704348 5599116 SGO_0658 Streptococcus gordonii str. Challis substr. CH1 anthranilate synthase component II YP_001449961.1 703785 D 467705 CDS YP_001449962.1 157151141 5598346 704359..705363 1 NC_009785.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 705363 trpD 5598346 trpD Streptococcus gordonii str. Challis substr. CH1 anthranilate phosphoribosyltransferase YP_001449962.1 704359 D 467705 CDS YP_001449963.1 157150552 5597876 705360..706127 1 NC_009785.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 706127 trpC 5597876 trpC Streptococcus gordonii str. Challis substr. CH1 indole-3-glycerol-phosphate synthase YP_001449963.1 705360 D 467705 CDS YP_001449964.1 157149922 5599014 706114..706701 1 NC_009785.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 706701 trpF 5599014 trpF Streptococcus gordonii str. Challis substr. CH1 N-(5'-phosphoribosyl)anthranilate isomerase YP_001449964.1 706114 D 467705 CDS YP_001449965.1 157150463 5599215 706691..707914 1 NC_009785.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 707914 trpB-1 5599215 trpB-1 Streptococcus gordonii str. Challis substr. CH1 tryptophan synthase subunit beta YP_001449965.1 706691 D 467705 CDS YP_001449966.1 157151446 5599180 707907..708686 1 NC_009785.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 708686 trpA 5599180 trpA Streptococcus gordonii str. Challis substr. CH1 tryptophan synthase subunit alpha YP_001449966.1 707907 D 467705 CDS YP_001449967.1 157150279 5598662 complement(708655..709317) 1 NC_009785.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type 4 prepilin peptidase 709317 5598662 SGO_0664 Streptococcus gordonii str. Challis substr. CH1 type 4 prepilin peptidase YP_001449967.1 708655 R 467705 CDS YP_001449968.1 157151324 5598763 709486..710001 1 NC_009785.1 identified by match to protein family HMM PF00210; non-heme iron-containing ferritin 710001 5598763 SGO_0665 Streptococcus gordonii str. Challis substr. CH1 non-heme iron-containing ferritin YP_001449968.1 709486 D 467705 CDS YP_001449969.1 157150839 5598967 710143..710403 1 NC_009785.1 identified by match to protein family HMM PF06014; hypothetical protein 710403 5598967 SGO_0666 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449969.1 710143 D 467705 CDS YP_001449970.1 157150372 5598491 710391..710777 1 NC_009785.1 identified by match to protein family HMM PF00581; rhodanese family protein 710777 5598491 SGO_0667 Streptococcus gordonii str. Challis substr. CH1 rhodanese family protein YP_001449970.1 710391 D 467705 CDS YP_001449971.1 157149724 5599360 complement(710943..711668) 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A 711668 rsuA 5599360 rsuA Streptococcus gordonii str. Challis substr. CH1 ribosomal small subunit pseudouridine synthase A YP_001449971.1 710943 R 467705 CDS YP_001449972.1 157150172 5599797 711850..713697 1 NC_009785.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 713697 typA 5599797 typA Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein TypA YP_001449972.1 711850 D 467705 CDS YP_001449973.1 157149720 5599059 713721..713999 1 NC_009785.1 hypothetical protein 713999 5599059 SGO_0670 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449973.1 713721 D 467705 CDS YP_001449974.1 157151093 5598489 714244..715596 1 NC_009785.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 715596 murD 5598489 murD Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001449974.1 714244 D 467705 CDS YP_001449975.1 157150629 5597957 715598..716668 1 NC_009785.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 716668 murG 5597957 murG Streptococcus gordonii str. Challis substr. CH1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001449975.1 715598 D 467705 CDS YP_001449976.1 157149952 5598869 716665..717858 1 NC_009785.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein DivIB 717858 divIB 5598869 divIB Streptococcus gordonii str. Challis substr. CH1 cell division protein DivIB YP_001449976.1 716665 D 467705 CDS YP_001449977.1 157151550 5598539 717958..719358 1 NC_009785.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 719358 ftsA 5598539 ftsA Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsA YP_001449977.1 717958 D 467705 CDS YP_001449978.1 157150730 5599087 719375..720634 1 NC_009785.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 720634 ftsZ 5599087 ftsZ Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsZ YP_001449978.1 719375 D 467705 CDS YP_001449979.1 157150424 5598691 720637..721308 1 NC_009785.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 721308 5598691 SGO_0676 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449979.1 720637 D 467705 CDS YP_001449980.1 157150788 5599246 721318..721887 1 NC_009785.1 identified by match to protein family HMM PF04472; ylmF protein 721887 5599246 SGO_0677 Streptococcus gordonii str. Challis substr. CH1 ylmF protein YP_001449980.1 721318 D 467705 CDS YP_001449981.1 157150993 5598594 721889..722155 1 NC_009785.1 identified by match to protein family HMM PF02325; cell division protein 722155 5598594 SGO_0678 Streptococcus gordonii str. Challis substr. CH1 cell division protein YP_001449981.1 721889 D 467705 CDS YP_001449982.1 157151563 5598187 722119..722946 1 NC_009785.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 722946 5598187 SGO_0679 Streptococcus gordonii str. Challis substr. CH1 S4 domain-containing protein YP_001449982.1 722119 D 467705 CDS YP_001449983.1 157149857 5599001 722956..723696 1 NC_009785.1 identified by match to protein family HMM PF05103; cell division protein DivIVA 723696 5599001 SGO_0680 Streptococcus gordonii str. Challis substr. CH1 cell division protein DivIVA YP_001449983.1 722956 D 467705 CDS YP_001449984.1 157150179 5598687 723962..726754 1 NC_009785.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 726754 ileS 5598687 ileS Streptococcus gordonii str. Challis substr. CH1 isoleucyl-tRNA synthetase YP_001449984.1 723962 D 467705 CDS YP_001449985.1 157150755 5598875 complement(726892..727308) 1 NC_009785.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01978; transcriptional regulator 727308 5598875 SGO_0682 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001449985.1 726892 R 467705 CDS YP_001449986.1 157150982 5598948 complement(727846..728145) 1 NC_009785.1 identified by match to protein family HMM PF08860; hypothetical protein 728145 5598948 SGO_0684 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449986.1 727846 R 467705 CDS YP_001449987.1 157151562 5598216 complement(728244..728696) 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 728696 5598216 SGO_0685 Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001449987.1 728244 R 467705 CDS YP_001449988.1 157149810 5599570 728855..729745 1 NC_009785.1 identified by match to protein family HMM PF08279; DeoR family transcriptional regulator 729745 5599570 SGO_0686 Streptococcus gordonii str. Challis substr. CH1 DeoR family transcriptional regulator YP_001449988.1 728855 D 467705 CDS YP_001449989.1 157149699 5598420 729805..730410 1 NC_009785.1 hypothetical protein 730410 5598420 SGO_0687 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449989.1 729805 D 467705 CDS YP_001449990.1 157151691 5598075 complement(730461..732722) 1 NC_009785.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP dependent Clp protease, ATP-binding subunit, ClpE 732722 5598075 SGO_0688 Streptococcus gordonii str. Challis substr. CH1 ATP dependent Clp protease, ATP-binding subunit, ClpE YP_001449990.1 730461 R 467705 CDS YP_001449991.1 157151125 5599170 732976..733206 1 NC_009785.1 identified by match to protein family HMM PF08796; hypothetical protein 733206 5599170 SGO_0689 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449991.1 732976 D 467705 CDS YP_001449992.1 157149818 5597908 733340..734194 1 NC_009785.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 734194 folD 5597908 folD Streptococcus gordonii str. Challis substr. CH1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001449992.1 733340 D 467705 CDS YP_001449993.1 157149927 5599687 734191..734964 1 NC_009785.1 identified by match to protein family HMM PF08282; hypothetical protein 734964 5599687 SGO_0691 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001449993.1 734191 D 467705 CDS YP_001449994.1 157150718 5599533 735072..735914 1 NC_009785.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; putative carbohydrate kinase 735914 5599533 SGO_0692 Streptococcus gordonii str. Challis substr. CH1 putative carbohydrate kinase YP_001449994.1 735072 D 467705 CDS YP_001449995.1 157150418 5598710 736071..737411 1 NC_009785.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 737411 xseA 5598710 xseA Streptococcus gordonii str. Challis substr. CH1 exodeoxyribonuclease VII large subunit YP_001449995.1 736071 D 467705 CDS YP_001449996.1 157150381 5599262 737389..737601 1 NC_009785.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 737601 xseB 5599262 xseB Streptococcus gordonii str. Challis substr. CH1 exodeoxyribonuclease VII small subunit YP_001449996.1 737389 D 467705 CDS YP_001449997.1 157150564 5599344 737598..738473 1 NC_009785.1 identified by match to protein family HMM PF00348; geranyltranstransferase 738473 5599344 SGO_0695 Streptococcus gordonii str. Challis substr. CH1 geranyltranstransferase YP_001449997.1 737598 D 467705 CDS YP_001449998.1 157151300 5598989 738466..739281 1 NC_009785.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin-like protein 739281 5598989 SGO_0696 Streptococcus gordonii str. Challis substr. CH1 hemolysin-like protein YP_001449998.1 738466 D 467705 CDS YP_001449999.1 157151702 5599738 739274..739705 1 NC_009785.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; transcriptional regulator 739705 5599738 SGO_0697 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001449999.1 739274 D 467705 CDS YP_001450000.1 157149943 5599454 739713..741371 1 NC_009785.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 741371 recN 5599454 recN Streptococcus gordonii str. Challis substr. CH1 DNA repair protein RecN YP_001450000.1 739713 D 467705 CDS YP_001450001.1 157150499 5599032 741409..742137 1 NC_009785.1 identified by match to protein family HMM PF00149; serine/threonine protein phosphatase 742137 5599032 SGO_0699 Streptococcus gordonii str. Challis substr. CH1 serine/threonine protein phosphatase YP_001450001.1 741409 D 467705 CDS YP_001450002.1 157150844 5599114 742201..743034 1 NC_009785.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 743034 5599114 SGO_0700 Streptococcus gordonii str. Challis substr. CH1 DegV family protein YP_001450002.1 742201 D 467705 CDS YP_001450003.1 157151424 5598475 743179..743454 1 NC_009785.1 identified by match to protein family HMM PF00216; DNA-binding histone-like protein HU 743454 hup 5598475 hup Streptococcus gordonii str. Challis substr. CH1 DNA-binding histone-like protein HU YP_001450003.1 743179 D 467705 CDS YP_001450004.1 157149760 5598509 complement(743307..743543) 1 NC_009785.1 hypothetical protein 743543 5598509 SGO_0702 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450004.1 743307 R 467705 CDS YP_001450005.1 157150284 5598935 743752..744222 1 NC_009785.1 identified by match to protein family HMM PF01475; ferric transport regulator protein 744222 5598935 SGO_0703 Streptococcus gordonii str. Challis substr. CH1 ferric transport regulator protein YP_001450005.1 743752 D 467705 CDS YP_001450006.1 157150394 5599788 744384..745076 1 NC_009785.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 745076 gpmA 5599788 gpmA Streptococcus gordonii str. Challis substr. CH1 phosphoglyceromutase YP_001450006.1 744384 D 467705 CDS YP_001450007.1 157150960 5599316 745168..745401 1 NC_009785.1 identified by match to protein family HMM PF06855; hypothetical protein 745401 5599316 SGO_0705 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450007.1 745168 D 467705 CDS YP_001450008.1 157151255 5598259 745486..746484 1 NC_009785.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562; phoH-like protein 746484 5598259 SGO_0706 Streptococcus gordonii str. Challis substr. CH1 phoH-like protein YP_001450008.1 745486 D 467705 CDS YP_001450009.1 157150739 5599557 746873..751804 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 751804 5599557 SGO_0707 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450009.1 746873 D 467705 CDS YP_001450010.1 157151292 5598676 complement(752015..753127) 1 NC_009785.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 753127 ald 5598676 ald Streptococcus gordonii str. Challis substr. CH1 alanine dehydrogenase YP_001450010.1 752015 R 467705 CDS YP_001450011.1 157150087 5599609 753320..753889 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 753889 5599609 SGO_0709 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450011.1 753320 D 467705 CDS YP_001450012.1 157150959 5597795 754238..754735 1 NC_009785.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 754735 5597795 SGO_0711 Streptococcus gordonii str. Challis substr. CH1 putative metalloprotease YP_001450012.1 754238 D 467705 CDS YP_001450013.1 157151553 5598260 754716..755114 1 NC_009785.1 identified by match to protein family HMM PF01219; diacylglycerol kinase (DAGK) (diglyceride kinase)(DGK) 755114 dgkA 5598260 dgkA Streptococcus gordonii str. Challis substr. CH1 diacylglycerol kinase (DAGK) (diglyceride kinase)(DGK) YP_001450013.1 754716 D 467705 CDS YP_001450014.1 157151336 5599226 755181..756080 1 NC_009785.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 756080 era 5599226 era Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein Era YP_001450014.1 755181 D 467705 CDS YP_001450015.1 157149856 5599359 756107..756889 1 NC_009785.1 identified by match to protein family HMM PF00561; hypothetical protein 756889 5599359 SGO_0714 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450015.1 756107 D 467705 CDS YP_001450016.1 157150267 5599416 757038..757862 1 NC_009785.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 757862 mutM 5599416 mutM Streptococcus gordonii str. Challis substr. CH1 formamidopyrimidine-DNA glycosylase YP_001450016.1 757038 D 467705 CDS YP_001450017.1 157150780 5598995 757868..758464 1 NC_009785.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 758464 coaE 5598995 coaE Streptococcus gordonii str. Challis substr. CH1 dephospho-CoA kinase YP_001450017.1 757868 D 467705 CDS YP_001450018.1 157150936 5598609 758514..759680 1 NC_009785.1 identified by match to protein family HMM PF07690; multi-drug resistance efflux pump 759680 5598609 SGO_0717 Streptococcus gordonii str. Challis substr. CH1 multi-drug resistance efflux pump YP_001450018.1 758514 D 467705 CDS YP_001450019.1 157151488 5598300 759862..760095 1 NC_009785.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 760095 secG 5598300 secG Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit SecG YP_001450019.1 759862 D 467705 CDS YP_001450020.1 157150067 5599028 760181..762529 1 NC_009785.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 762529 rnr 5599028 rnr Streptococcus gordonii str. Challis substr. CH1 ribonuclease R YP_001450020.1 760181 D 467705 CDS YP_001450021.1 157150641 5599404 762492..762959 1 NC_009785.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 762959 smpB 5599404 smpB Streptococcus gordonii str. Challis substr. CH1 SsrA-binding protein YP_001450021.1 762492 D 467705 CDS YP_001450022.1 157151277 5598851 763211..764941 1 NC_009785.1 identified by match to protein family HMM PF03577; abpB-like dipeptidase lipoprotein 764941 5598851 SGO_0721 Streptococcus gordonii str. Challis substr. CH1 abpB-like dipeptidase lipoprotein YP_001450022.1 763211 D 467705 CDS YP_001450023.1 157149788 5599626 765120..765980 1 NC_009785.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 765980 tehB 5599626 tehB Streptococcus gordonii str. Challis substr. CH1 tellurite resistance protein TehB YP_001450023.1 765120 D 467705 CDS YP_001450024.1 157150405 5598621 766208..766366 1 NC_009785.1 hypothetical protein 766366 5598621 SGO_0723 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450024.1 766208 D 467705 CDS YP_001450025.1 157150985 5599294 766290..767915 1 NC_009785.1 identified by match to protein family HMM PF03577; dipeptidase 767915 5599294 SGO_0724 Streptococcus gordonii str. Challis substr. CH1 dipeptidase YP_001450025.1 766290 D 467705 CDS YP_001450026.1 157151537 5598206 767908..768720 1 NC_009785.1 hypothetical protein 768720 5598206 SGO_0725 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450026.1 767908 D 467705 CDS YP_001450027.1 157150050 5599700 complement(768890..769450) 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator 769450 5599700 SGO_0726 Streptococcus gordonii str. Challis substr. CH1 TetR/AcrR family transcriptional regulator YP_001450027.1 768890 R 467705 CDS YP_001450028.1 157150152 5599210 769413..769511 1 NC_009785.1 hypothetical protein 769511 5599210 SGO_0727 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450028.1 769413 D 467705 CDS YP_001450029.1 157150378 5599750 769592..770293 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 770293 5599750 SGO_0728 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450029.1 769592 D 467705 CDS YP_001450030.1 157150694 5599347 770295..773018 1 NC_009785.1 identified by match to protein family HMM PF02687; ABC transporter permease 773018 5599347 SGO_0729 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001450030.1 770295 D 467705 CDS YP_001450031.1 157149833 5598757 773112..773960 1 NC_009785.1 identified by match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 773960 5598757 SGO_0730 Streptococcus gordonii str. Challis substr. CH1 serine/threonine protein phosphatase family protein YP_001450031.1 773112 D 467705 CDS YP_001450032.1 157150627 5598139 774017..774466 1 NC_009785.1 identified by match to protein family HMM PF02082; RRF2 family protein 774466 5598139 SGO_0731 Streptococcus gordonii str. Challis substr. CH1 RRF2 family protein YP_001450032.1 774017 D 467705 CDS YP_001450033.1 157150967 5598871 774706..774834 1 NC_009785.1 hypothetical protein 774834 5598871 SGO_0732 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450033.1 774706 D 467705 CDS YP_001450034.1 157151301 5598153 775796..776068 1 NC_009785.1 identified by match to protein family HMM PF04024; PspC domain-containing protein 776068 5598153 SGO_0734 Streptococcus gordonii str. Challis substr. CH1 PspC domain-containing protein YP_001450034.1 775796 D 467705 CDS YP_001450035.1 157151361 5598890 776701..777636 1 NC_009785.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 777636 hprK 5598890 hprK Streptococcus gordonii str. Challis substr. CH1 HPr kinase/phosphorylase YP_001450035.1 776701 D 467705 CDS YP_001450036.1 157151623 5598035 777629..778438 1 NC_009785.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 778438 lgt 5598035 lgt Streptococcus gordonii str. Challis substr. CH1 prolipoprotein diacylglyceryl transferase YP_001450036.1 777629 D 467705 CDS YP_001450037.1 157150966 5599693 778431..778814 1 NC_009785.1 identified by match to protein family HMM PF06103; hypothetical protein 778814 5599693 SGO_0738 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450037.1 778431 D 467705 CDS YP_001450038.1 157150198 5598247 778836..779279 1 NC_009785.1 hypothetical protein 779279 5598247 SGO_0739 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450038.1 778836 D 467705 CDS YP_001450039.1 157150057 5598166 779369..780169 1 NC_009785.1 putative lipoprotein 780169 5598166 SGO_0740 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450039.1 779369 D 467705 CDS YP_001450040.1 157151390 5599402 complement(780212..780499) 1 NC_009785.1 hypothetical protein 780499 5599402 SGO_0741 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450040.1 780212 R 467705 CDS YP_001450041.1 157150705 5598266 780694..781623 1 NC_009785.1 identified by match to protein family HMM PF01136; U32 family peptidase 781623 5598266 SGO_0742 Streptococcus gordonii str. Challis substr. CH1 U32 family peptidase YP_001450041.1 780694 D 467705 CDS YP_001450042.1 157150270 5598732 781820..783106 1 NC_009785.1 identified by match to protein family HMM PF01136; U32 family peptidase 783106 5598732 SGO_0743 Streptococcus gordonii str. Challis substr. CH1 U32 family peptidase YP_001450042.1 781820 D 467705 CDS YP_001450043.1 157149708 5599465 complement(783142..783465) 1 NC_009785.1 hypothetical protein 783465 5599465 SGO_0744 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450043.1 783142 R 467705 CDS YP_001450044.1 157151430 5599531 783620..783832 1 NC_009785.1 hypothetical protein 783832 5599531 SGO_0745 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450044.1 783620 D 467705 CDS YP_001450045.1 157150508 5599566 complement(783845..784399) 1 NC_009785.1 identified by match to protein family HMM PF02632; biotin synthase 784399 bioY-1 5599566 bioY-1 Streptococcus gordonii str. Challis substr. CH1 biotin synthase YP_001450045.1 783845 R 467705 CDS YP_001450046.1 157151239 5599094 784830..785969 1 NC_009785.1 putative methionine synthase 785969 5599094 SGO_0747 Streptococcus gordonii str. Challis substr. CH1 putative methionine synthase YP_001450046.1 784830 D 467705 CDS YP_001450047.1 157150766 5599834 785990..786721 1 NC_009785.1 identified by match to protein family HMM PF04199; hypothetical protein 786721 5599834 SGO_0748 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450047.1 785990 D 467705 CDS YP_001450048.1 157150814 5598629 complement(787043..788392) 1 NC_009785.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 788392 5598629 SGO_0749 Streptococcus gordonii str. Challis substr. CH1 glutathione reductase YP_001450048.1 787043 R 467705 CDS YP_001450049.1 157150604 5598535 788595..789779 1 NC_009785.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 789779 5598535 SGO_0750 Streptococcus gordonii str. Challis substr. CH1 RND family efflux transporter MFP subunit YP_001450049.1 788595 D 467705 CDS YP_001450050.1 157150108 5598915 789763..790458 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 790458 5598915 SGO_0751 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450050.1 789763 D 467705 CDS YP_001450051.1 157151478 5599532 790459..791733 1 NC_009785.1 identified by match to protein family HMM PF02687; ABC transporter ATP-binding protein 791733 5599532 SGO_0752 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450051.1 790459 D 467705 CDS YP_001450052.1 157151486 5599716 complement(791823..793313) 1 NC_009785.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 793313 lysS 5599716 lysS Streptococcus gordonii str. Challis substr. CH1 lysyl-tRNA synthetase YP_001450052.1 791823 R 467705 CDS YP_001450053.1 157150344 5599009 complement(793405..794046) 1 NC_009785.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 794046 5599009 SGO_0754 Streptococcus gordonii str. Challis substr. CH1 phosphoglycerate mutase family protein YP_001450053.1 793405 R 467705 CDS YP_001450054.1 157149782 5599406 complement(794076..794552) 1 NC_009785.1 identified by match to protein family HMM PF04073; regulatory protein 794552 5599406 SGO_0755 Streptococcus gordonii str. Challis substr. CH1 regulatory protein YP_001450054.1 794076 R 467705 CDS YP_001450055.1 157151148 5599598 complement(794552..795394) 1 NC_009785.1 identified by match to protein family HMM PF04018; integral membrane protein 795394 5599598 SGO_0756 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450055.1 794552 R 467705 CDS YP_001450056.1 157150690 5597866 complement(795535..796281) 1 NC_009785.1 identified by match to protein family HMM PF01183; U32 family peptidase 796281 5597866 SGO_0757 Streptococcus gordonii str. Challis substr. CH1 U32 family peptidase YP_001450056.1 795535 R 467705 CDS YP_001450057.1 157150254 5598765 complement(796449..796925) 1 NC_009785.1 identified by match to protein family HMM PF00255; glutathione peroxidase 796925 5598765 SGO_0758 Streptococcus gordonii str. Challis substr. CH1 glutathione peroxidase YP_001450057.1 796449 R 467705 CDS YP_001450058.1 157150432 5598312 797062..798273 1 NC_009785.1 identified by match to protein family HMM PF01098; cell division protein FtsW 798273 5598312 SGO_0759 Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsW YP_001450058.1 797062 D 467705 CDS YP_001450059.1 157149951 5599235 798325..801171 1 NC_009785.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 801171 ppc 5599235 ppc Streptococcus gordonii str. Challis substr. CH1 phosphoenolpyruvate carboxylase YP_001450059.1 798325 D 467705 CDS YP_001450060.1 157151582 5597804 801466..802662 1 NC_009785.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 802662 tuf 5597804 tuf Streptococcus gordonii str. Challis substr. CH1 elongation factor Tu YP_001450060.1 801466 D 467705 CDS YP_001450061.1 157151151 5598731 802936..803694 1 NC_009785.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 803694 tpiA 5598731 tpiA Streptococcus gordonii str. Challis substr. CH1 triosephosphate isomerase YP_001450061.1 802936 D 467705 CDS YP_001450062.1 157150105 5597863 804097..805377 1 NC_009785.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 805377 murA-1 5597863 murA-1 Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001450062.1 804097 D 467705 CDS YP_001450063.1 157149722 5598707 805364..805558 1 NC_009785.1 hypothetical protein 805558 5598707 SGO_0764 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450063.1 805364 D 467705 CDS YP_001450064.1 157151356 5598911 805603..806442 1 NC_009785.1 identified by match to protein family HMM PF01223; DNA-entry nuclease 806442 endA 5598911 endA Streptococcus gordonii str. Challis substr. CH1 DNA-entry nuclease YP_001450064.1 805603 D 467705 CDS YP_001450065.1 157151010 5599635 complement(806658..807359) 1 NC_009785.1 alpha-beta hydrolase superfamily esterase 807359 5599635 SGO_0766 Streptococcus gordonii str. Challis substr. CH1 alpha-beta hydrolase superfamily esterase YP_001450065.1 806658 R 467705 CDS YP_001450066.1 157149740 5598141 complement(807340..808209) 1 NC_009785.1 identified by match to protein family HMM PF01497; transporter 808209 5598141 SGO_0767 Streptococcus gordonii str. Challis substr. CH1 transporter YP_001450066.1 807340 R 467705 CDS YP_001450067.1 157150061 5597973 808199..808393 1 NC_009785.1 hypothetical protein 808393 5597973 SGO_0768 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450067.1 808199 D 467705 CDS YP_001450068.1 157150905 5598356 complement(808513..809268) 1 NC_009785.1 identified by match to protein family HMM PF00005; iron compound transport ATP-binding protein 809268 5598356 SGO_0769 Streptococcus gordonii str. Challis substr. CH1 iron compound transport ATP-binding protein YP_001450068.1 808513 R 467705 CDS YP_001450069.1 157151231 5598360 complement(809270..810316) 1 NC_009785.1 identified by match to protein family HMM PF01032; iron ABC transporter 810316 5598360 SGO_0770 Streptococcus gordonii str. Challis substr. CH1 iron ABC transporter YP_001450069.1 809270 R 467705 CDS YP_001450070.1 157149961 5599786 complement(810767..811849) 1 NC_009785.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; proline dipeptidase 811849 pepq 5599786 pepq Streptococcus gordonii str. Challis substr. CH1 proline dipeptidase YP_001450070.1 810767 R 467705 CDS YP_001450071.1 157150300 5598558 811832..811954 1 NC_009785.1 hypothetical protein 811954 5598558 SGO_0772 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450071.1 811832 D 467705 CDS YP_001450072.1 157151243 5599471 812014..813018 1 NC_009785.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A 813018 ccpA 5599471 ccpA Streptococcus gordonii str. Challis substr. CH1 catabolite control protein A YP_001450072.1 812014 D 467705 CDS YP_001450073.1 157150779 5598038 813196..814161 1 NC_009785.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 814161 5598038 SGO_0774 Streptococcus gordonii str. Challis substr. CH1 glycoside hydrolase family protein YP_001450073.1 813196 D 467705 CDS YP_001450074.1 157150560 5598610 814163..815476 1 NC_009785.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 815476 5598610 SGO_0775 Streptococcus gordonii str. Challis substr. CH1 group 1 glycosyl transferase YP_001450074.1 814163 D 467705 CDS YP_001450075.1 157149653 5599000 815512..815874 1 NC_009785.1 hypothetical protein 815874 5599000 SGO_0776 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450075.1 815512 D 467705 CDS YP_001450076.1 157150541 5598657 816208..816579 1 NC_009785.1 hypothetical protein 816579 5598657 SGO_0777 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450076.1 816208 D 467705 CDS YP_001450077.1 157150881 5599030 816671..818614 1 NC_009785.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 818614 thrS 5599030 thrS Streptococcus gordonii str. Challis substr. CH1 threonyl-tRNA synthetase YP_001450077.1 816671 D 467705 CDS YP_001450078.1 157151157 5598404 818820..819521 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator 819521 5598404 SGO_0779 Streptococcus gordonii str. Challis substr. CH1 response regulator YP_001450078.1 818820 D 467705 CDS YP_001450079.1 157151584 5597853 819514..820875 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; histidine kinase 820875 5597853 SGO_0780 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001450079.1 819514 D 467705 CDS YP_001450080.1 157150207 5598697 820868..821671 1 NC_009785.1 identified by match to protein family HMM PF00753; zinc-dependent hydrolase 821671 vicX 5598697 vicX Streptococcus gordonii str. Challis substr. CH1 zinc-dependent hydrolase YP_001450080.1 820868 D 467705 CDS YP_001450081.1 157150664 5597823 821706..822062 1 NC_009785.1 identified by match to protein family HMM PF04304; hypothetical protein 822062 5597823 SGO_0782 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450081.1 821706 D 467705 CDS YP_001450082.1 157150981 5598815 822305..823003 1 NC_009785.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 823003 rnc 5598815 rnc Streptococcus gordonii str. Challis substr. CH1 ribonuclease III YP_001450082.1 822305 D 467705 CDS YP_001450083.1 157151450 5598222 822994..826527 1 NC_009785.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 826527 smc 5598222 smc Streptococcus gordonii str. Challis substr. CH1 chromosome segregation protein SMC YP_001450083.1 822994 D 467705 CDS YP_001450084.1 157150078 5599659 826529..827326 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 827326 5599659 SGO_0785 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001450084.1 826529 D 467705 CDS YP_001450085.1 157151341 5599861 827323..828132 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 828132 5599861 SGO_0786 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001450085.1 827323 D 467705 CDS YP_001450086.1 157150948 5597844 828151..829740 1 NC_009785.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cell division protein FtsY 829740 ftsY 5597844 ftsY Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsY YP_001450086.1 828151 D 467705 CDS YP_001450087.1 157151693 5598283 complement(829785..831245) 1 NC_009785.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 831245 zwf 5598283 zwf Streptococcus gordonii str. Challis substr. CH1 glucose-6-phosphate 1-dehydrogenase YP_001450087.1 829785 R 467705 CDS YP_001450088.1 157150395 5599198 complement(831376..832191) 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF09323; substrate-binding transport protein 832191 5599198 SGO_0789 Streptococcus gordonii str. Challis substr. CH1 substrate-binding transport protein YP_001450088.1 831376 R 467705 CDS YP_001450089.1 157149779 5599314 complement(832188..833093) 1 NC_009785.1 identified by match to protein family HMM PF03773; permease family protein 833093 5599314 SGO_0790 Streptococcus gordonii str. Challis substr. CH1 permease family protein YP_001450089.1 832188 R 467705 CDS YP_001450090.1 157149870 5599779 complement(833090..833227) 1 NC_009785.1 hypothetical protein 833227 5599779 SGO_0791 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450090.1 833090 R 467705 CDS YP_001450091.1 157151257 5598756 833398..835530 1 NC_009785.1 identified by match to protein family HMM PF00575; hypothetical protein 835530 5598756 SGO_0792 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450091.1 833398 D 467705 CDS YP_001450092.1 157150833 5599506 835517..835957 1 NC_009785.1 identified by match to protein family HMM PF03926; hypothetical protein 835957 5599506 SGO_0793 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450092.1 835517 D 467705 CDS YP_001450093.1 157150494 5598506 836125..837786 1 NC_009785.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 837786 5598506 SGO_0794 Streptococcus gordonii str. Challis substr. CH1 metallo-beta-lactamase family protein YP_001450093.1 836125 D 467705 CDS YP_001450094.1 157151136 5599122 837837..838628 1 NC_009785.1 identified by match to protein family HMM PF00756; tributyrin esterase 838628 5599122 SGO_0795 Streptococcus gordonii str. Challis substr. CH1 tributyrin esterase YP_001450094.1 837837 D 467705 CDS YP_001450095.1 157150526 5597886 838765..839478 1 NC_009785.1 identified by match to protein family HMM PF00413; hypothetical protein 839478 5597886 SGO_0796 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450095.1 838765 D 467705 CDS YP_001450096.1 157151456 5599060 839965..841581 1 NC_009785.1 RocB protein 841581 5599060 SGO_0797 Streptococcus gordonii str. Challis substr. CH1 RocB protein YP_001450096.1 839965 D 467705 CDS YP_001450097.1 157149706 5597935 841697..842440 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 842440 5597935 SGO_0798 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450097.1 841697 D 467705 CDS YP_001450098.1 157150266 5599774 842430..844058 1 NC_009785.1 hypothetical protein 844058 5599774 SGO_0799 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450098.1 842430 D 467705 CDS YP_001450099.1 157150278 5598384 complement(844079..845020) 1 NC_009785.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 845020 5598384 SGO_0800 Streptococcus gordonii str. Challis substr. CH1 polysaccharide deacetylase family protein YP_001450099.1 844079 R 467705 CDS YP_001450100.1 157151261 5598102 845140..846426 1 NC_009785.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 846426 hom 5598102 hom Streptococcus gordonii str. Challis substr. CH1 homoserine dehydrogenase YP_001450100.1 845140 D 467705 CDS YP_001450101.1 157149884 5598411 846428..847294 1 NC_009785.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 847294 thrB 5598411 thrB Streptococcus gordonii str. Challis substr. CH1 homoserine kinase YP_001450101.1 846428 D 467705 CDS YP_001450102.1 157150338 5598750 847385..848308 1 NC_009785.1 hypothetical protein 848308 5598750 SGO_0803 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450102.1 847385 D 467705 CDS YP_001450103.1 157150747 5599412 848405..849313 1 NC_009785.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 849313 murB 5599412 murB Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001450103.1 848405 D 467705 CDS YP_001450104.1 157151441 5598661 849526..850683 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA 850683 potA 5598661 potA Streptococcus gordonii str. Challis substr. CH1 spermidine/putrescine import ATP-binding protein PotA YP_001450104.1 849526 D 467705 CDS YP_001450105.1 157150062 5599709 850664..851470 1 NC_009785.1 identified by match to protein family HMM PF00528; spermidine/putrescine import ATP-binding protein PotB 851470 potB 5599709 potB Streptococcus gordonii str. Challis substr. CH1 spermidine/putrescine import ATP-binding protein PotB YP_001450105.1 850664 D 467705 CDS YP_001450106.1 157150647 5599727 851467..852240 1 NC_009785.1 identified by match to protein family HMM PF00528; spermidine/putrescine import ATP-binding protein PotC 852240 potC 5599727 potC Streptococcus gordonii str. Challis substr. CH1 spermidine/putrescine import ATP-binding protein PotC YP_001450106.1 851467 D 467705 CDS YP_001450107.1 157150979 5598844 852237..853307 1 NC_009785.1 identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter 853307 potD 5598844 potD Streptococcus gordonii str. Challis substr. CH1 spermidine/putrescine ABC transporter YP_001450107.1 852237 D 467705 CDS YP_001450108.1 157150451 5598226 complement(853341..853748) 1 NC_009785.1 hypothetical protein 853748 5598226 SGO_0809 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450108.1 853341 R 467705 CDS YP_001450109.1 157151192 5599199 complement(854039..856660) 1 NC_009785.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 856660 ppdK 5599199 ppdK Streptococcus gordonii str. Challis substr. CH1 pyruvate phosphate dikinase YP_001450109.1 854039 R 467705 CDS YP_001450110.1 157151358 5597792 856895..857533 1 NC_009785.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 857533 5597792 SGO_0811 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450110.1 856895 D 467705 CDS YP_001450111.1 157149974 5599628 857536..858348 1 NC_009785.1 identified by match to protein family HMM PF03618; hypothetical protein 858348 5599628 SGO_0812 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450111.1 857536 D 467705 CDS YP_001450112.1 157149929 5597948 858404..860314 1 NC_009785.1 identified by match to protein family HMM PF06874; fructose-bisphosphatase 860314 5597948 SGO_0813 Streptococcus gordonii str. Challis substr. CH1 fructose-bisphosphatase YP_001450112.1 858404 D 467705 CDS YP_001450113.1 157151654 5599804 860414..861556 1 NC_009785.1 identified by match to protein family HMM PF00266; class-V aminotransferase 861556 5599804 SGO_0814 Streptococcus gordonii str. Challis substr. CH1 class-V aminotransferase YP_001450113.1 860414 D 467705 CDS YP_001450114.1 157151681 5597826 861560..862774 1 NC_009785.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 862774 thiI 5597826 thiI Streptococcus gordonii str. Challis substr. CH1 thiamine biosynthesis protein ThiI YP_001450114.1 861560 D 467705 CDS YP_001450115.1 157150801 5598997 862796..863317 1 NC_009785.1 hypothetical protein 863317 5598997 SGO_0816 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450115.1 862796 D 467705 CDS YP_001450116.1 157150224 5598568 863420..864013 1 NC_009785.1 hypothetical protein 864013 5598568 SGO_0817 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450116.1 863420 D 467705 CDS YP_001450117.1 157149660 5599852 864233..864547 1 NC_009785.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 864547 rplU 5599852 rplU Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L21 YP_001450117.1 864233 D 467705 CDS YP_001450118.1 157150851 5598575 864563..864907 1 NC_009785.1 identified by match to protein family HMM PF04327; ribosomal protein 864907 5598575 SGO_0819 Streptococcus gordonii str. Challis substr. CH1 ribosomal protein YP_001450118.1 864563 D 467705 CDS YP_001450119.1 157150094 5598457 864925..865218 1 NC_009785.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 865218 rpmA 5598457 rpmA Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L27 YP_001450119.1 864925 D 467705 CDS YP_001450120.1 157151696 5597952 865384..865689 1 NC_009785.1 identified by match to protein family HMM PF00581; rhodanese family protein 865689 5597952 SGO_0821 Streptococcus gordonii str. Challis substr. CH1 rhodanese family protein YP_001450120.1 865384 D 467705 CDS YP_001450121.1 157151039 5599491 complement(865749..866276) 1 NC_009785.1 putative lipoprotein 866276 5599491 SGO_0822 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450121.1 865749 R 467705 CDS YP_001450122.1 157150363 5598070 complement(866506..867318) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 867318 5598070 SGO_0823 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001450122.1 866506 R 467705 CDS YP_001450123.1 157151567 5599376 867441..869264 1 NC_009785.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 869264 lepA 5599376 lepA Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein LepA YP_001450123.1 867441 D 467705 CDS YP_001450124.1 157151276 5598987 869308..869943 1 NC_009785.1 putative lipoprotein 869943 5598987 SGO_0825 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450124.1 869308 D 467705 CDS YP_001450125.1 157149900 5599845 870034..870528 1 NC_009785.1 identified by match to protein family HMM PF03692; hypothetical protein 870528 5599845 SGO_0826 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450125.1 870034 D 467705 CDS YP_001450126.1 157150637 5599611 870726..871559 1 NC_009785.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 871559 5599611 SGO_0827 Streptococcus gordonii str. Challis substr. CH1 AraC family transcriptional regulator YP_001450126.1 870726 D 467705 CDS YP_001450127.1 157151102 5598859 871613..872539 1 NC_009785.1 hypothetical protein 872539 5598859 SGO_0828 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450127.1 871613 D 467705 CDS YP_001450128.1 157151538 5597942 872745..873434 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD superfamily hydrolase 873434 5597942 SGO_0829 Streptococcus gordonii str. Challis substr. CH1 HAD superfamily hydrolase YP_001450128.1 872745 D 467705 CDS YP_001450129.1 157149911 5599348 873477..875312 1 NC_009785.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 875312 uvrC 5599348 uvrC Streptococcus gordonii str. Challis substr. CH1 excinuclease ABC subunit C YP_001450129.1 873477 D 467705 CDS YP_001450130.1 157149875 5599661 complement(875466..875705) 1 NC_009785.1 hypothetical protein 875705 5599661 SGO_0831 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450130.1 875466 R 467705 CDS YP_001450131.1 157151034 5599725 875683..876027 1 NC_009785.1 hypothetical protein 876027 5599725 SGO_0832 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450131.1 875683 D 467705 CDS YP_001450132.1 157151327 5598078 876285..877130 1 NC_009785.1 identified by match to protein family HMM PF00149; phosphoesterase-related gene 877130 5598078 SGO_0833 Streptococcus gordonii str. Challis substr. CH1 phosphoesterase-related gene YP_001450132.1 876285 D 467705 CDS YP_001450133.1 157150114 5597873 877137..878801 1 NC_009785.1 hypothetical protein 878801 5597873 SGO_0834 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450133.1 877137 D 467705 CDS YP_001450134.1 157150896 5598301 878916..879521 1 NC_009785.1 identified by match to protein family HMM PF00881; nitroreductase 879521 5598301 SGO_0835 Streptococcus gordonii str. Challis substr. CH1 nitroreductase YP_001450134.1 878916 D 467705 CDS YP_001450135.1 157151333 5598381 879568..880971 1 NC_009785.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 880971 pepV 5598381 pepV Streptococcus gordonii str. Challis substr. CH1 dipeptidase PepV YP_001450135.1 879568 D 467705 CDS YP_001450136.1 157151546 5599817 881024..881608 1 NC_009785.1 identified by match to protein family HMM PF03167; uracil-DNA glycosylase 881608 5599817 SGO_0837 Streptococcus gordonii str. Challis substr. CH1 uracil-DNA glycosylase YP_001450136.1 881024 D 467705 CDS YP_001450137.1 157150296 5597801 881621..882109 1 NC_009785.1 identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase associated domain-containing protein 882109 5597801 SGO_0838 Streptococcus gordonii str. Challis substr. CH1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001450137.1 881621 D 467705 CDS YP_001450138.1 157150955 5599475 882164..882487 1 NC_009785.1 identified by match to protein family HMM PF04993; TfoX domain-containing protein 882487 5599475 SGO_0839 Streptococcus gordonii str. Challis substr. CH1 TfoX domain-containing protein YP_001450138.1 882164 D 467705 CDS YP_001450139.1 157151543 5598267 882649..883098 1 NC_009785.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 883098 5598267 SGO_0840 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001450139.1 882649 D 467705 CDS YP_001450140.1 157150045 5599333 883275..884267 1 NC_009785.1 identified by match to protein family HMM PF08240; oxidoreductase 884267 5599333 SGO_0841 Streptococcus gordonii str. Challis substr. CH1 oxidoreductase YP_001450140.1 883275 D 467705 CDS YP_001450141.1 157149801 5599276 884254..884550 1 NC_009785.1 identified by match to protein family HMM PF00581; rhodanese family protein 884550 5599276 SGO_0842 Streptococcus gordonii str. Challis substr. CH1 rhodanese family protein YP_001450141.1 884254 D 467705 CDS YP_001450142.1 157151019 5599879 884661..885410 1 NC_009785.1 identified by match to protein family HMM PF02557; carboxypeptidase 885410 5599879 SGO_0843 Streptococcus gordonii str. Challis substr. CH1 carboxypeptidase YP_001450142.1 884661 D 467705 CDS YP_001450143.1 157150671 5598120 885471..885761 1 NC_009785.1 hypothetical protein 885761 5598120 SGO_0844 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450143.1 885471 D 467705 CDS YP_001450144.1 157150089 5598803 complement(885851..886723) 1 NC_009785.1 identified by match to protein family HMM PF01473; cell wall binding protein 886723 5598803 SGO_0845 Streptococcus gordonii str. Challis substr. CH1 cell wall binding protein YP_001450144.1 885851 R 467705 CDS YP_001450145.1 157151323 5598000 887524..889527 1 NC_009785.1 identified by match to protein family HMM PF00188; cell wall protein 889527 5598000 SGO_0846 Streptococcus gordonii str. Challis substr. CH1 cell wall protein YP_001450145.1 887524 D 467705 CDS YP_001450146.1 157150692 5599495 889751..891178 1 NC_009785.1 identified by match to protein family HMM PF00188; SCP-like extracellular protein 891178 5599495 SGO_0847 Streptococcus gordonii str. Challis substr. CH1 SCP-like extracellular protein YP_001450146.1 889751 D 467705 CDS YP_001450147.1 157150375 5598762 complement(891332..891616) 1 NC_009785.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 891616 rpmE 5598762 rpmE Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L31 YP_001450147.1 891332 R 467705 CDS YP_001450148.1 157151593 5599352 complement(891673..892617) 1 NC_009785.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 892617 5599352 SGO_0849 Streptococcus gordonii str. Challis substr. CH1 DHH subfamily 1 protein YP_001450148.1 891673 R 467705 CDS YP_001450149.1 157151164 5598570 892734..893177 1 NC_009785.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 893177 5598570 SGO_0850 Streptococcus gordonii str. Challis substr. CH1 flavodoxin YP_001450149.1 892734 D 467705 CDS YP_001450150.1 157150464 5597841 893328..894494 1 NC_009785.1 identified by match to protein family HMM PF01594; putative permease 894494 5597841 SGO_0851 Streptococcus gordonii str. Challis substr. CH1 putative permease YP_001450150.1 893328 D 467705 CDS YP_001450151.1 157151062 5599179 894502..895719 1 NC_009785.1 identified by similarity to GB:AAO81340.1; match to protein family HMM PF00515; hypothetical protein 895719 5599179 SGO_0852 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450151.1 894502 D 467705 CDS YP_001450152.1 157150352 5598028 895840..896559 1 NC_009785.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 896559 budA 5598028 budA Streptococcus gordonii str. Challis substr. CH1 alpha-acetolactate decarboxylase YP_001450152.1 895840 D 467705 CDS YP_001450153.1 157149904 5599390 896889..904412 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; surface-associated protein CshA 904412 cshA 5599390 cshA Streptococcus gordonii str. Challis substr. CH1 surface-associated protein CshA YP_001450153.1 896889 D 467705 CDS YP_001450154.1 157151214 5598186 complement(904490..906142) 1 NC_009785.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein A 906142 fbpA 5598186 fbpA Streptococcus gordonii str. Challis substr. CH1 fibronectin-binding protein A YP_001450154.1 904490 R 467705 CDS YP_001450155.1 157150771 5597754 906706..907710 1 NC_009785.1 identified by match to protein family HMM PF04392; ABC transporter substrate binding protein 907710 5597754 SGO_0856 Streptococcus gordonii str. Challis substr. CH1 ABC transporter substrate binding protein YP_001450155.1 906706 D 467705 CDS YP_001450156.1 157151189 5598624 907777..908643 1 NC_009785.1 identified by match to protein family HMM PF02653; ABC transporter permease 908643 5598624 SGO_0857 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001450156.1 907777 D 467705 CDS YP_001450157.1 157150487 5597798 908640..909398 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 909398 5597798 SGO_0858 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450157.1 908640 D 467705 CDS YP_001450158.1 157149980 5599135 910329..911378 1 NC_009785.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 911378 pheS 5599135 pheS Streptococcus gordonii str. Challis substr. CH1 phenylalanyl-tRNA synthetase subunit alpha YP_001450158.1 910329 D 467705 CDS YP_001450159.1 157151392 5597773 911424..911933 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 911933 5597773 SGO_0860 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450159.1 911424 D 467705 CDS YP_001450160.1 157150935 5597963 911992..914589 1 NC_009785.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 914589 pheT 5597963 pheT Streptococcus gordonii str. Challis substr. CH1 phenylalanyl-tRNA synthetase subunit beta YP_001450160.1 911992 D 467705 CDS YP_001450161.1 157149991 5598302 914703..915416 1 NC_009785.1 hypothetical protein 915416 5598302 SGO_0862 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450161.1 914703 D 467705 CDS YP_001450162.1 157150455 5599167 915568..915960 1 NC_009785.1 identified by match to protein family HMM PF08349; hypothetical protein 915960 5599167 SGO_0863 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450162.1 915568 D 467705 CDS YP_001450163.1 157151403 5597900 917845..918030 1 NC_009785.1 hypothetical protein 918030 5597900 SGO_0865 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450163.1 917845 D 467705 CDS YP_001450164.1 157149791 5598505 918604..918813 1 NC_009785.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 918813 5598505 SGO_0867 Streptococcus gordonii str. Challis substr. CH1 Cro/CI family transcriptional regulator YP_001450164.1 918604 D 467705 CDS YP_001450165.1 157150393 5599496 918816..919004 1 NC_009785.1 hypothetical protein 919004 5599496 SGO_0868 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450165.1 918816 D 467705 CDS YP_001450166.1 157151483 5599317 919140..919379 1 NC_009785.1 hypothetical protein 919379 5599317 SGO_0869 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450166.1 919140 D 467705 CDS YP_001450167.1 157149989 5598054 complement(919886..920176) 1 NC_009785.1 hypothetical protein 920176 5598054 SGO_0870 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450167.1 919886 R 467705 CDS YP_001450168.1 157151058 5599152 920741..920971 1 NC_009785.1 putative cytoplasmic protein 920971 5599152 SGO_0872 Streptococcus gordonii str. Challis substr. CH1 putative cytoplasmic protein YP_001450168.1 920741 D 467705 CDS YP_001450169.1 157149771 5598033 920999..921430 1 NC_009785.1 putative cytoplasmic protein 921430 5598033 SGO_0873 Streptococcus gordonii str. Challis substr. CH1 putative cytoplasmic protein YP_001450169.1 920999 D 467705 CDS YP_001450170.1 157150096 5598900 921583..922041 1 NC_009785.1 putative lipoprotein 922041 5598900 SGO_0874 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450170.1 921583 D 467705 CDS YP_001450171.1 157150911 5597921 complement(922309..923034) 1 NC_009785.1 hypothetical protein 923034 5597921 SGO_0875 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450171.1 922309 R 467705 CDS YP_001450172.1 157151245 5598347 923144..923752 1 NC_009785.1 hypothetical protein 923752 5598347 SGO_0876 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450172.1 923144 D 467705 CDS YP_001450173.1 157149939 5599053 923821..924882 1 NC_009785.1 identified by match to protein family HMM PF02687; permease domain protein 924882 5599053 SGO_0877 Streptococcus gordonii str. Challis substr. CH1 permease domain protein YP_001450173.1 923821 D 467705 CDS YP_001450174.1 157150536 5599777 924883..925548 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 925548 5599777 SGO_0878 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450174.1 924883 D 467705 CDS YP_001450175.1 157151098 5599041 926008..926187 1 NC_009785.1 hypothetical protein 926187 5599041 SGO_0879 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450175.1 926008 D 467705 CDS YP_001450176.1 157151335 5597949 928289..928468 1 NC_009785.1 hypothetical protein 928468 5597949 SGO_0880 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450176.1 928289 D 467705 CDS YP_001450177.1 157149962 5598096 928362..928718 1 NC_009785.1 hypothetical protein 928718 5598096 SGO_0881 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450177.1 928362 D 467705 CDS YP_001450178.1 157150650 5599604 928723..929586 1 NC_009785.1 identified by match to protein family HMM TIGR01716; putative transcriptional regulator RggC 929586 rggC 5599604 rggC Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator RggC YP_001450178.1 928723 D 467705 CDS YP_001450179.1 157150994 5598839 929665..930846 1 NC_009785.1 identified by match to protein family HMM PF07690; transporter SP1116 930846 5598839 SGO_0883 Streptococcus gordonii str. Challis substr. CH1 transporter SP1116 YP_001450179.1 929665 D 467705 CDS YP_001450180.1 157150861 5598185 complement(930865..931122) 1 NC_009785.1 hypothetical protein 931122 5598185 SGO_0884 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450180.1 930865 R 467705 CDS YP_001450181.1 157150696 5598443 complement(931141..931926) 1 NC_009785.1 identified by match to protein family HMM PF07685; cobyric acid synthase 931926 5598443 SGO_0885 Streptococcus gordonii str. Challis substr. CH1 cobyric acid synthase YP_001450181.1 931141 R 467705 CDS YP_001450182.1 157150711 5598754 complement(931926..933269) 1 NC_009785.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353; Mur ligase family protein 933269 5598754 SGO_0886 Streptococcus gordonii str. Challis substr. CH1 Mur ligase family protein YP_001450182.1 931926 R 467705 CDS YP_001450183.1 157150406 5598719 933436..934218 1 NC_009785.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 934218 5598719 SGO_0887 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450183.1 933436 D 467705 CDS YP_001450184.1 157149806 5599286 934215..934961 1 NC_009785.1 identified by match to protein family HMM PF07949; hypothetical protein 934961 5599286 SGO_0888 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450184.1 934215 D 467705 CDS YP_001450185.1 157151573 5599650 934998..936350 1 NC_009785.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 936350 glmM 5599650 glmM Streptococcus gordonii str. Challis substr. CH1 phosphoglucosamine mutase YP_001450185.1 934998 D 467705 CDS YP_001450186.1 157151344 5598876 936521..938413 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 938413 5598876 SGO_0890 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450186.1 936521 D 467705 CDS YP_001450187.1 157149862 5599174 complement(938444..938551) 1 NC_009785.1 hypothetical protein 938551 5599174 SGO_0891 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450187.1 938444 R 467705 CDS YP_001450188.1 157150452 5599717 938590..938721 1 NC_009785.1 hypothetical protein 938721 5599717 SGO_0892 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450188.1 938590 D 467705 CDS YP_001450189.1 157151616 5599197 938797..940107 1 NC_009785.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 940107 obgE 5599197 obgE Streptococcus gordonii str. Challis substr. CH1 GTPase ObgE YP_001450189.1 938797 D 467705 CDS YP_001450190.1 157151590 5598213 940119..940274 1 NC_009785.1 hypothetical protein 940274 5598213 SGO_0894 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450190.1 940119 D 467705 CDS YP_001450191.1 157150164 5598363 940401..940973 1 NC_009785.1 identified by match to protein family HMM PF04229; hypothetical protein 940973 5598363 SGO_0895 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450191.1 940401 D 467705 CDS YP_001450192.1 157149752 5599387 940979..941593 1 NC_009785.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 941593 5599387 SGO_0896 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450192.1 940979 D 467705 CDS YP_001450193.1 157151614 5599593 941606..942226 1 NC_009785.1 identified by match to protein family HMM PF03575; peptidase E 942226 5599593 SGO_0897 Streptococcus gordonii str. Challis substr. CH1 peptidase E YP_001450193.1 941606 D 467705 CDS YP_001450194.1 157150934 5597939 942341..942751 1 NC_009785.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator putative 942751 5597939 SGO_0898 Streptococcus gordonii str. Challis substr. CH1 Cro/CI family transcriptional regulator putative YP_001450194.1 942341 D 467705 CDS YP_001450195.1 157150196 5598307 942762..943862 1 NC_009785.1 identified by match to protein family HMM PF00561; putative hydrolase or acyltransferase 943862 5598307 SGO_0899 Streptococcus gordonii str. Challis substr. CH1 putative hydrolase or acyltransferase YP_001450195.1 942762 D 467705 CDS YP_001450196.1 157151455 5598172 943880..944500 1 NC_009785.1 identified by match to protein family HMM PF01590; hypothetical protein 944500 5598172 SGO_0900 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450196.1 943880 D 467705 CDS YP_001450197.1 157150866 5598637 944500..946170 1 NC_009785.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 946170 5598637 SGO_0901 Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III subunits gamma and tau YP_001450197.1 944500 D 467705 CDS YP_001450198.1 157150034 5598433 946209..946394 1 NC_009785.1 hypothetical protein 946394 5598433 SGO_0902 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450198.1 946209 D 467705 CDS YP_001450199.1 157149694 5599112 complement(946453..947388) 1 NC_009785.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 947388 birA 5599112 birA Streptococcus gordonii str. Challis substr. CH1 biotin--protein ligase YP_001450199.1 946453 R 467705 CDS YP_001450200.1 157151536 5598127 complement(947405..948406) 1 NC_009785.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; galactose operon repressor GalR 948406 purR 5598127 purR Streptococcus gordonii str. Challis substr. CH1 galactose operon repressor GalR YP_001450200.1 947405 R 467705 CDS YP_001450201.1 157150505 5597799 948572..949228 1 NC_009785.1 putative lipoprotein 949228 5597799 SGO_0905 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450201.1 948572 D 467705 CDS YP_001450202.1 157150231 5599101 949680..951248 1 NC_009785.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 951248 leuA 5599101 leuA Streptococcus gordonii str. Challis substr. CH1 2-isopropylmalate synthase YP_001450202.1 949680 D 467705 CDS YP_001450203.1 157149669 5599414 951261..952298 1 NC_009785.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 952298 leuB 5599414 leuB Streptococcus gordonii str. Challis substr. CH1 3-isopropylmalate dehydrogenase YP_001450203.1 951261 D 467705 CDS YP_001450204.1 157151406 5598442 952295..952561 1 NC_009785.1 identified by match to protein family HMM PF06961; membrane protein 952561 5598442 SGO_0908 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001450204.1 952295 D 467705 CDS YP_001450205.1 157151511 5599617 952563..953945 1 NC_009785.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 953945 leuC 5599617 leuC Streptococcus gordonii str. Challis substr. CH1 isopropylmalate isomerase large subunit YP_001450205.1 952563 D 467705 CDS YP_001450206.1 157150852 5599203 953955..954545 1 NC_009785.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 954545 leuD 5599203 leuD Streptococcus gordonii str. Challis substr. CH1 isopropylmalate isomerase small subunit YP_001450206.1 953955 D 467705 CDS YP_001450207.1 157150619 5598456 954645..955424 1 NC_009785.1 hypothetical protein 955424 5598456 SGO_0911 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450207.1 954645 D 467705 CDS YP_001450208.1 157149920 5598892 955668..956105 1 NC_009785.1 identified by match to protein family HMM PF01047; SlyA-like protein 956105 5598892 SGO_0912 Streptococcus gordonii str. Challis substr. CH1 SlyA-like protein YP_001450208.1 955668 D 467705 CDS YP_001450209.1 157151397 5598092 956887..957615 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC-type proline/glycine betaine transporter 957615 proV 5598092 proV Streptococcus gordonii str. Challis substr. CH1 ABC-type proline/glycine betaine transporter YP_001450209.1 956887 D 467705 CDS YP_001450210.1 157151096 5598310 957608..959128 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; ABC transporter permease 959128 proWX 5598310 proWX Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001450210.1 957608 D 467705 CDS YP_001450211.1 157150469 5597954 959466..960068 1 NC_009785.1 hypothetical protein 960068 5597954 SGO_0917 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450211.1 959466 D 467705 CDS YP_001450212.1 157150350 5599171 960125..960859 1 NC_009785.1 identified by match to protein family HMM PF02361; cobalt ABC transporter permease 960859 5599171 SGO_0918 Streptococcus gordonii str. Challis substr. CH1 cobalt ABC transporter permease YP_001450212.1 960125 D 467705 CDS YP_001450213.1 157150535 5599393 960835..961671 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 961671 5599393 SGO_0919 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450213.1 960835 D 467705 CDS YP_001450214.1 157150695 5599042 961658..962458 1 NC_009785.1 identified by match to protein family HMM PF00005; cobalt transport ATP-binding protein 962458 5599042 SGO_0920 Streptococcus gordonii str. Challis substr. CH1 cobalt transport ATP-binding protein YP_001450214.1 961658 D 467705 CDS YP_001450215.1 157151142 5598755 complement(962540..962680) 1 NC_009785.1 hypothetical protein 962680 5598755 SGO_0921 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450215.1 962540 R 467705 CDS YP_001450216.1 157150809 5597875 complement(962592..962702) 1 NC_009785.1 hypothetical protein 962702 5597875 SGO_0922 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450216.1 962592 R 467705 CDS YP_001450217.1 157150223 5598547 complement(962683..962856) 1 NC_009785.1 near IS element with potential frameshift; HsdD protein 962856 5598547 SGO_0923 Streptococcus gordonii str. Challis substr. CH1 HsdD protein YP_001450217.1 962683 R 467705 CDS YP_001450218.1 157150137 5597979 complement(962832..963059) 1 NC_009785.1 HsdD protein 963059 5597979 SGO_0924 Streptococcus gordonii str. Challis substr. CH1 HsdD protein YP_001450218.1 962832 R 467705 CDS YP_001450219.1 157151639 5599673 complement(963072..963329) 1 NC_009785.1 plasmid replication protein-like protein 963329 5599673 SGO_0925 Streptococcus gordonii str. Challis substr. CH1 plasmid replication protein-like protein YP_001450219.1 963072 R 467705 CDS YP_001450220.1 157150746 5599452 complement(963322..963720) 1 NC_009785.1 identified by match to protein family HMM PF06430; putative DNA replicative RepB-like protein 963720 5599452 SGO_0926 Streptococcus gordonii str. Challis substr. CH1 putative DNA replicative RepB-like protein YP_001450220.1 963322 R 467705 CDS YP_001450221.1 157150024 5599086 complement(965049..965621) 1 NC_009785.1 identified by match to protein family HMM PF00440; transcriptional regulator 965621 5599086 SGO_0929 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001450221.1 965049 R 467705 CDS YP_001450222.1 157151626 5598665 965643..966533 1 NC_009785.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein 966533 5598665 SGO_0930 Streptococcus gordonii str. Challis substr. CH1 cation efflux system protein YP_001450222.1 965643 D 467705 CDS YP_001450223.1 157150283 5597849 967706..968884 1 NC_009785.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 968884 galK 5597849 galK Streptococcus gordonii str. Challis substr. CH1 galactokinase YP_001450223.1 967706 D 467705 CDS YP_001450224.1 157151056 5598037 969104..970585 1 NC_009785.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 970585 galT 5598037 galT Streptococcus gordonii str. Challis substr. CH1 galactose-1-phosphate uridylyltransferase YP_001450224.1 969104 D 467705 CDS YP_001450225.1 157151274 5598036 970631..971632 1 NC_009785.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 971632 galE-2 5598036 galE-2 Streptococcus gordonii str. Challis substr. CH1 UDP-glucose 4-epimerase YP_001450225.1 970631 D 467705 CDS YP_001450226.1 157149664 5599463 971819..972409 1 NC_009785.1 identified by match to protein family HMM PF01864; CDP-diglyceride synthetase 972409 5599463 SGO_0935 Streptococcus gordonii str. Challis substr. CH1 CDP-diglyceride synthetase YP_001450226.1 971819 D 467705 CDS YP_001450227.1 157150090 5598542 972424..974919 1 NC_009785.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 974919 5598542 SGO_0936 Streptococcus gordonii str. Challis substr. CH1 phosphoenolpyruvate synthase YP_001450227.1 972424 D 467705 CDS YP_001450228.1 157150816 5597992 974906..975538 1 NC_009785.1 identified by match to protein family HMM PF01066; phosphatidylserine synthase 975538 5597992 SGO_0937 Streptococcus gordonii str. Challis substr. CH1 phosphatidylserine synthase YP_001450228.1 974906 D 467705 CDS YP_001450229.1 157149959 5598533 975531..976403 1 NC_009785.1 identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase 976403 5598533 SGO_0938 Streptococcus gordonii str. Challis substr. CH1 phosphatidylserine decarboxylase YP_001450229.1 975531 D 467705 CDS YP_001450230.1 157150684 5599574 976565..977287 1 NC_009785.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 977287 ubiA 5599574 ubiA Streptococcus gordonii str. Challis substr. CH1 prenyltransferase YP_001450230.1 976565 D 467705 CDS YP_001450231.1 157151134 5598782 977287..979770 1 NC_009785.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 979770 ppsA 5598782 ppsA Streptococcus gordonii str. Challis substr. CH1 phosphoenolpyruvate synthase YP_001450231.1 977287 D 467705 CDS YP_001450232.1 157151317 5597891 979757..980830 1 NC_009785.1 hypothetical protein 980830 5597891 SGO_0941 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450232.1 979757 D 467705 CDS YP_001450233.1 157149710 5599830 981033..988826 1 NC_009785.1 identified by match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01168; zinc metalloproteinase C 988826 zmpC 5599830 zmpC Streptococcus gordonii str. Challis substr. CH1 zinc metalloproteinase C YP_001450233.1 981033 D 467705 CDS YP_001450234.1 157149894 5598218 988955..989536 1 NC_009785.1 hypothetical protein 989536 5598218 SGO_0943 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450234.1 988955 D 467705 CDS YP_001450235.1 157150041 5597777 989529..990209 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 990209 5597777 SGO_0944 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450235.1 989529 D 467705 CDS YP_001450236.1 157150781 5599330 990213..991358 1 NC_009785.1 identified by match to protein family HMM PF02687; ABC transporter permease 991358 5599330 SGO_0945 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001450236.1 990213 D 467705 CDS YP_001450237.1 157151087 5598608 991446..992483 1 NC_009785.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343; deblocking aminopeptidase 992483 5598608 SGO_0946 Streptococcus gordonii str. Challis substr. CH1 deblocking aminopeptidase YP_001450237.1 991446 D 467705 CDS YP_001450238.1 157151533 5597969 992500..993432 1 NC_009785.1 hydrolase 993432 5597969 SGO_0947 Streptococcus gordonii str. Challis substr. CH1 hydrolase YP_001450238.1 992500 D 467705 CDS YP_001450239.1 157149869 5599579 993598..994995 1 NC_009785.1 identified by match to protein family HMM PF01522; peptidoglycan N-acetylglucosamine deacetylase A 994995 pgdA 5599579 pgdA Streptococcus gordonii str. Challis substr. CH1 peptidoglycan N-acetylglucosamine deacetylase A YP_001450239.1 993598 D 467705 CDS YP_001450240.1 157150328 5598317 complement(995089..996204) 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 996204 deaD 5598317 deaD Streptococcus gordonii str. Challis substr. CH1 DEAD/DEAH box helicase YP_001450240.1 995089 R 467705 CDS YP_001450241.1 157150628 5599426 complement(996170..997150) 1 NC_009785.1 identified by match to protein family HMM PF01408; oxidoreductase 997150 5599426 SGO_0950 Streptococcus gordonii str. Challis substr. CH1 oxidoreductase YP_001450241.1 996170 R 467705 CDS YP_001450242.1 157151213 5598870 997253..997885 1 NC_009785.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 997885 udk 5598870 udk Streptococcus gordonii str. Challis substr. CH1 uridine kinase YP_001450242.1 997253 D 467705 CDS YP_001450243.1 157151558 5597755 997927..998598 1 NC_009785.1 identified by match to protein family HMM PF06912; integral membrane protein 998598 5597755 SGO_0952 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450243.1 997927 D 467705 CDS YP_001450244.1 157150693 5599131 998818..999198 1 NC_009785.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 999198 5599131 SGO_0953 Streptococcus gordonii str. Challis substr. CH1 endoribonuclease L-PSP YP_001450244.1 998818 D 467705 CDS YP_001450245.1 157151648 5598758 999223..1000113 1 NC_009785.1 identified by match to protein family HMM PF03668; hypothetical protein 1000113 5598758 SGO_0954 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450245.1 999223 D 467705 CDS YP_001450246.1 157149790 5599551 1000110..1001084 1 NC_009785.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; transporter 1001084 5599551 SGO_0955 Streptococcus gordonii str. Challis substr. CH1 transporter YP_001450246.1 1000110 D 467705 CDS YP_001450247.1 157150234 5597871 1001081..1001992 1 NC_009785.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 1001992 5597871 SGO_0956 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450247.1 1001081 D 467705 CDS YP_001450248.1 157150895 5599721 1002179..1002793 1 NC_009785.1 hypothetical protein 1002793 5599721 SGO_0957 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450248.1 1002179 D 467705 CDS YP_001450249.1 157150003 5598382 1002805..1003671 1 NC_009785.1 hypothetical protein 1003671 5598382 SGO_0958 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450249.1 1002805 D 467705 CDS YP_001450250.1 157150513 5599568 1003752..1004384 1 NC_009785.1 identified by match to protein family HMM PF03932; copper homeostasis protein CutC 1004384 5599568 SGO_0959 Streptococcus gordonii str. Challis substr. CH1 copper homeostasis protein CutC YP_001450250.1 1003752 D 467705 CDS YP_001450251.1 157150586 5599085 1004429..1005100 1 NC_009785.1 identified by match to protein family HMM PF04237; hypothetical protein 1005100 5599085 SGO_0960 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450251.1 1004429 D 467705 CDS YP_001450252.1 157150273 5598946 1005191..1006930 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 1006930 5598946 SGO_0961 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease/ATP-binding protein YP_001450252.1 1005191 D 467705 CDS YP_001450253.1 157150182 5599734 1006932..1008674 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein 1008674 5599734 SGO_0962 Streptococcus gordonii str. Challis substr. CH1 permease ATP-binding protein YP_001450253.1 1006932 D 467705 CDS YP_001450254.1 157149845 5598790 complement(1008686..1010092) 1 NC_009785.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1010092 5598790 SGO_0963 Streptococcus gordonii str. Challis substr. CH1 GntR family transcriptional regulator YP_001450254.1 1008686 R 467705 CDS YP_001450255.1 157151337 5599825 1010070..1010930 1 NC_009785.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1010930 pdxK 5599825 pdxK Streptococcus gordonii str. Challis substr. CH1 pyridoxamine kinase YP_001450255.1 1010070 D 467705 CDS YP_001450256.1 157151023 5598229 1010923..1011453 1 NC_009785.1 integral membrane protein 1011453 5598229 SGO_0965 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450256.1 1010923 D 467705 CDS YP_001450257.1 157150914 5598110 1011694..1018230 1 NC_009785.1 identified by similarity to GB:BAA97453.1; match to protein family HMM PF00746; match to protein family HMM TIGR01167; streptococcal hemagglutinin 1018230 hsa 5598110 hsa Streptococcus gordonii str. Challis substr. CH1 streptococcal hemagglutinin YP_001450257.1 1011694 D 467705 CDS YP_001450258.1 157150867 5599808 1019760..1020617 1 NC_009785.1 identified by match to protein family HMM PF08759; glycosyl transferase family protein 1020617 5599808 SGO_0968 Streptococcus gordonii str. Challis substr. CH1 glycosyl transferase family protein YP_001450258.1 1019760 D 467705 CDS YP_001450259.1 157151566 5597980 1020634..1021638 1 NC_009785.1 hypothetical protein 1021638 nss 5597980 nss Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450259.1 1020634 D 467705 CDS YP_001450260.1 157150413 5598663 1021670..1022893 1 NC_009785.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1022893 secY 5598663 secY Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit SecY YP_001450260.1 1021670 D 467705 CDS YP_001450261.1 157150584 5599274 1022902..1024482 1 NC_009785.1 accessory secretory protein 1024482 asp1 5599274 asp1 Streptococcus gordonii str. Challis substr. CH1 accessory secretory protein YP_001450261.1 1022902 D 467705 CDS YP_001450262.1 157151293 5598949 1024472..1026001 1 NC_009785.1 accessory sescretory protein 1026001 asp2 5598949 asp2 Streptococcus gordonii str. Challis substr. CH1 accessory sescretory protein YP_001450262.1 1024472 D 467705 CDS YP_001450263.1 157150011 5598917 1026037..1026477 1 NC_009785.1 accessory secretory protein 1026477 asp3 5598917 asp3 Streptococcus gordonii str. Challis substr. CH1 accessory secretory protein YP_001450263.1 1026037 D 467705 CDS YP_001450264.1 157151438 5598370 1028864..1030384 1 NC_009785.1 identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918; glycosyl transferase, group 1 SP1758 1030384 gtaA 5598370 gtaA Streptococcus gordonii str. Challis substr. CH1 glycosyl transferase, group 1 SP1758 YP_001450264.1 1028864 D 467705 CDS YP_001450265.1 157151498 5599701 1030368..1031720 1 NC_009785.1 identified by match to protein family HMM TIGR02919; hypothetical protein 1031720 5599701 SGO_0976 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450265.1 1030368 D 467705 CDS YP_001450266.1 157150160 5599106 1031713..1031895 1 NC_009785.1 hypothetical protein 1031895 5599106 SGO_0977 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450266.1 1031713 D 467705 CDS YP_001450267.1 157150460 5599508 1031897..1032118 1 NC_009785.1 hypothetical protein 1032118 5599508 SGO_0978 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450267.1 1031897 D 467705 CDS YP_001450268.1 157151150 5599183 complement(1032189..1033034) 1 NC_009785.1 identified by match to protein family HMM PF02645; degV family protein 1033034 5599183 SGO_0979 Streptococcus gordonii str. Challis substr. CH1 degV family protein YP_001450268.1 1032189 R 467705 CDS YP_001450269.1 157151384 5597864 1033161..1033730 1 NC_009785.1 identified by match to protein family HMM PF00440; transcriptional regulator 1033730 5597864 SGO_0980 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001450269.1 1033161 D 467705 CDS YP_001450270.1 157150018 5599653 1033746..1034213 1 NC_009785.1 identified by match to protein family HMM PF00383; ComE operon family protein 1034213 5599653 SGO_0981 Streptococcus gordonii str. Challis substr. CH1 ComE operon family protein YP_001450270.1 1033746 D 467705 CDS YP_001450271.1 157150751 5599315 complement(1034289..1035143) 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF00497; amino acid transport protein 1035143 5599315 SGO_0982 Streptococcus gordonii str. Challis substr. CH1 amino acid transport protein YP_001450271.1 1034289 R 467705 CDS YP_001450272.1 157151215 5598653 complement(1035155..1035913) 1 NC_009785.1 ABC transporterATP-binding protein; identified by match to protein family HMM PF00005; amino acid transport protein 1035913 5598653 SGO_0983 Streptococcus gordonii str. Challis substr. CH1 amino acid transport protein YP_001450272.1 1035155 R 467705 CDS YP_001450273.1 157150519 5597747 complement(1035915..1036592) 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid permease 1036592 5597747 SGO_0984 Streptococcus gordonii str. Challis substr. CH1 amino acid permease YP_001450273.1 1035915 R 467705 CDS YP_001450274.1 157151057 5599072 complement(1036552..1037232) 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid permease 1037232 5599072 SGO_0985 Streptococcus gordonii str. Challis substr. CH1 amino acid permease YP_001450274.1 1036552 R 467705 CDS YP_001450275.1 157150383 5598034 1037567..1038055 1 NC_009785.1 hypothetical protein 1038055 5598034 SGO_0986 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450275.1 1037567 D 467705 CDS YP_001450276.1 157150952 5599340 1038378..1039568 1 NC_009785.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1039568 metK 5599340 metK Streptococcus gordonii str. Challis substr. CH1 S-adenosylmethionine synthetase YP_001450276.1 1038378 D 467705 CDS YP_001450277.1 157151522 5598272 1039628..1040554 1 NC_009785.1 identified by match to protein family HMM PF08279; putative transcriptional regulator 1040554 5598272 SGO_0988 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001450277.1 1039628 D 467705 CDS YP_001450278.1 157149852 5598683 1040638..1041003 1 NC_009785.1 hypothetical protein 1041003 5598683 SGO_0989 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450278.1 1040638 D 467705 CDS YP_001450279.1 157150320 5599739 1041232..1042479 1 NC_009785.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 1042479 5599739 SGO_0990 Streptococcus gordonii str. Challis substr. CH1 major facilitator transporter YP_001450279.1 1041232 D 467705 CDS YP_001450280.1 157150777 5599439 complement(1042575..1042745) 1 NC_009785.1 hypothetical protein 1042745 5599439 SGO_0991 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450280.1 1042575 R 467705 CDS YP_001450281.1 157150821 5598612 1042827..1043711 1 NC_009785.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1043711 miaA 5598612 miaA Streptococcus gordonii str. Challis substr. CH1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001450281.1 1042827 D 467705 CDS YP_001450282.1 157150665 5598525 1043743..1044981 1 NC_009785.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156; GTP-binding protein HflX 1044981 5598525 SGO_0993 Streptococcus gordonii str. Challis substr. CH1 GTP-binding protein HflX YP_001450282.1 1043743 D 467705 CDS YP_001450283.1 157151132 5598814 1044974..1045597 1 NC_009785.1 hypothetical protein 1045597 5598814 SGO_0994 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450283.1 1044974 D 467705 CDS YP_001450284.1 157151193 5597896 1045608..1046537 1 NC_009785.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1046537 5597896 SGO_0995 Streptococcus gordonii str. Challis substr. CH1 ribonuclease Z YP_001450284.1 1045608 D 467705 CDS YP_001450285.1 157149666 5597789 1046642..1047397 1 NC_009785.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 1047397 5597789 SGO_0996 Streptococcus gordonii str. Challis substr. CH1 short chain dehydrogenase/reductase family oxidoreductase YP_001450285.1 1046642 D 467705 CDS YP_001450286.1 157149677 5598493 1047437..1048141 1 NC_009785.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 1048141 5598493 SGO_0997 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450286.1 1047437 D 467705 CDS YP_001450287.1 157150195 5598367 1048197..1049249 1 NC_009785.1 hypothetical protein 1049249 5598367 SGO_0998 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450287.1 1048197 D 467705 CDS YP_001450288.1 157150904 5598193 1049286..1049876 1 NC_009785.1 identified by match to protein family HMM PF01966; hydrolase 1049876 5598193 SGO_0999 Streptococcus gordonii str. Challis substr. CH1 hydrolase YP_001450288.1 1049286 D 467705 CDS YP_001450289.1 157151363 5598364 1049907..1052201 1 NC_009785.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1052201 recJ 5598364 recJ Streptococcus gordonii str. Challis substr. CH1 single-stranded-DNA-specific exonuclease RecJ YP_001450289.1 1049907 D 467705 CDS YP_001450290.1 157150579 5598020 1052287..1052799 1 NC_009785.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1052799 apt 5598020 apt Streptococcus gordonii str. Challis substr. CH1 adenine phosphoribosyltransferase YP_001450290.1 1052287 D 467705 CDS YP_001450291.1 157151003 5598956 1052899..1053840 1 NC_009785.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1053840 metA 5598956 metA Streptococcus gordonii str. Challis substr. CH1 homoserine O-succinyltransferase YP_001450291.1 1052899 D 467705 CDS YP_001450292.1 157149765 5598162 1053849..1054529 1 NC_009785.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 1054529 5598162 SGO_1003 Streptococcus gordonii str. Challis substr. CH1 DNA replication protein DnaD YP_001450292.1 1053849 D 467705 CDS YP_001450293.1 157150080 5598800 1054597..1055385 1 NC_009785.1 YghU; B2989; one of eight putative glutathione transferases from E. coli; putative glutathione S-transferase YghU 1055385 5598800 SGO_1004 Streptococcus gordonii str. Challis substr. CH1 putative glutathione S-transferase YghU YP_001450293.1 1054597 D 467705 CDS YP_001450294.1 157150849 5598007 1055527..1056216 1 NC_009785.1 identified by match to protein family HMM PF04816; bcl-2 family protein 1056216 5598007 SGO_1005 Streptococcus gordonii str. Challis substr. CH1 bcl-2 family protein YP_001450294.1 1055527 D 467705 CDS YP_001450295.1 157150271 5598461 1056203..1057000 1 NC_009785.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1057000 5598461 SGO_1006 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450295.1 1056203 D 467705 CDS YP_001450296.1 157150387 5599374 1057012..1058106 1 NC_009785.1 identified by match to protein family HMM PF01266; oxidoreductase, DadA family protein SP1608 1058106 5599374 SGO_1007 Streptococcus gordonii str. Challis substr. CH1 oxidoreductase, DadA family protein SP1608 YP_001450296.1 1057012 D 467705 CDS YP_001450297.1 157149794 5599328 1058108..1058578 1 NC_009785.1 identified by match to protein family HMM PF00293; phosphohydrolase 1058578 5599328 SGO_1008 Streptococcus gordonii str. Challis substr. CH1 phosphohydrolase YP_001450297.1 1058108 D 467705 CDS YP_001450298.1 157151373 5598725 1058910..1059779 1 NC_009785.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1059779 rfbA-1 5598725 rfbA-1 Streptococcus gordonii str. Challis substr. CH1 glucose-1-phosphate thymidylyltransferase YP_001450298.1 1058910 D 467705 CDS YP_001450299.1 157150920 5599632 1059784..1060377 1 NC_009785.1 identified by match to protein family HMM PF00908; dTDP-4-keto-6-deoxyglucose-3,5-epimerase 1060377 rmlC 5599632 rmlC Streptococcus gordonii str. Challis substr. CH1 dTDP-4-keto-6-deoxyglucose-3,5-epimerase YP_001450299.1 1059784 D 467705 CDS YP_001450300.1 157151431 5598329 1060546..1061592 1 NC_009785.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 1061592 rfbB-1 5598329 rfbB-1 Streptococcus gordonii str. Challis substr. CH1 dTDP-glucose 4,6-dehydratase YP_001450300.1 1060546 D 467705 CDS YP_001450301.1 157150607 5599652 1061633..1062652 1 NC_009785.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1062652 galE-1 5599652 galE-1 Streptococcus gordonii str. Challis substr. CH1 UDP-glucose 4-epimerase YP_001450301.1 1061633 D 467705 CDS YP_001450302.1 157149749 5598910 1062936..1063646 1 NC_009785.1 identified by match to protein family HMM PF00535; cell wall biosynthesis glycosyltransferase 1063646 5598910 SGO_1013 Streptococcus gordonii str. Challis substr. CH1 cell wall biosynthesis glycosyltransferase YP_001450302.1 1062936 D 467705 CDS YP_001450303.1 157149747 5599400 1063615..1063983 1 NC_009785.1 hypothetical protein 1063983 5599400 SGO_1014 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450303.1 1063615 D 467705 CDS YP_001450304.1 157151376 5597757 1063985..1065241 1 NC_009785.1 hypothetical protein 1065241 5597757 SGO_1015 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450304.1 1063985 D 467705 CDS YP_001450305.1 157151591 5599657 1065241..1066023 1 NC_009785.1 identified by match to protein family HMM PF00535; putative glycosyltransferase 1066023 5599657 SGO_1016 Streptococcus gordonii str. Challis substr. CH1 putative glycosyltransferase YP_001450305.1 1065241 D 467705 CDS YP_001450306.1 157150211 5599671 1066033..1067508 1 NC_009785.1 hypothetical protein 1067508 5599671 SGO_1017 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450306.1 1066033 D 467705 CDS YP_001450307.1 157150459 5598753 1067675..1069423 1 NC_009785.1 hypothetical protein 1069423 5598753 SGO_1018 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450307.1 1067675 D 467705 CDS YP_001450308.1 157150457 5599187 1069480..1070406 1 NC_009785.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1070406 5599187 SGO_1019 Streptococcus gordonii str. Challis substr. CH1 glycosyl transferase family protein YP_001450308.1 1069480 D 467705 CDS YP_001450309.1 157149997 5599190 1070475..1071326 1 NC_009785.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1071326 rfbD 5599190 rfbD Streptococcus gordonii str. Challis substr. CH1 dTDP-4-dehydrorhamnose reductase YP_001450309.1 1070475 D 467705 CDS YP_001450310.1 157151348 5598641 1071519..1072667 1 NC_009785.1 identified by match to protein family HMM PF09314; rhamnosyltransferase 1072667 rgpA 5598641 rgpA Streptococcus gordonii str. Challis substr. CH1 rhamnosyltransferase YP_001450310.1 1071519 D 467705 CDS YP_001450311.1 157150726 5598833 1072664..1073605 1 NC_009785.1 identified by match to protein family HMM PF00535; rhamnosyltransferase 1073605 5598833 SGO_1022 Streptococcus gordonii str. Challis substr. CH1 rhamnosyltransferase YP_001450311.1 1072664 D 467705 CDS YP_001450312.1 157150760 5598699 1073605..1074411 1 NC_009785.1 identified by match to protein family HMM PF01061; putative polysaccharide permease 1074411 5598699 SGO_1023 Streptococcus gordonii str. Challis substr. CH1 putative polysaccharide permease YP_001450312.1 1073605 D 467705 CDS YP_001450313.1 157150362 5598636 1074411..1075634 1 NC_009785.1 identified by match to protein family HMM PF00005; putative polysaccharide ABC transporter 1075634 5598636 SGO_1024 Streptococcus gordonii str. Challis substr. CH1 putative polysaccharide ABC transporter YP_001450313.1 1074411 D 467705 CDS YP_001450314.1 157149885 5599377 1075647..1076996 1 NC_009785.1 identified by match to protein family HMM PF00535; glycosyltransferase 1076996 rgp 5599377 rgp Streptococcus gordonii str. Challis substr. CH1 glycosyltransferase YP_001450314.1 1075647 D 467705 CDS YP_001450315.1 157151529 5599695 1076998..1078746 1 NC_009785.1 identified by match to protein family HMM PF05045; rhamnosyltransferase 1078746 5599695 SGO_1026 Streptococcus gordonii str. Challis substr. CH1 rhamnosyltransferase YP_001450315.1 1076998 D 467705 CDS YP_001450316.1 157151064 5599363 1078743..1081211 1 NC_009785.1 identified by match to protein family HMM PF00884; hypothetical protein 1081211 5599363 SGO_1027 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450316.1 1078743 D 467705 CDS YP_001450317.1 157150153 5598025 1081361..1081849 1 NC_009785.1 hypothetical protein 1081849 5598025 SGO_1028 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450317.1 1081361 D 467705 CDS YP_001450318.1 157151267 5599685 complement(1081846..1082043) 1 NC_009785.1 ferredoxin 1082043 5599685 SGO_1029 Streptococcus gordonii str. Challis substr. CH1 ferredoxin YP_001450318.1 1081846 R 467705 CDS YP_001450319.1 157150787 5598021 1082089..1082538 1 NC_009785.1 hypothetical protein 1082538 5598021 SGO_1030 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450319.1 1082089 D 467705 CDS YP_001450320.1 157150341 5598595 1082548..1083225 1 NC_009785.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1083225 cmk 5598595 cmk Streptococcus gordonii str. Challis substr. CH1 cytidylate kinase YP_001450320.1 1082548 D 467705 CDS YP_001450321.1 157150634 5599409 1083497..1084027 1 NC_009785.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1084027 infC 5599409 infC Streptococcus gordonii str. Challis substr. CH1 translation initiation factor IF-3 YP_001450321.1 1083497 D 467705 CDS YP_001450322.1 157150048 5598864 1084062..1084262 1 NC_009785.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1084262 rpmI 5598864 rpmI Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L35 YP_001450322.1 1084062 D 467705 CDS YP_001450323.1 157149726 5598902 1084313..1084672 1 NC_009785.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1084672 rplT 5598902 rplT Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L20 YP_001450323.1 1084313 D 467705 CDS YP_001450324.1 157151247 5597991 1084806..1085186 1 NC_009785.1 identified by match to protein family HMM PF00903; lactoylglutathione lyase 1085186 gloA 5597991 gloA Streptococcus gordonii str. Challis substr. CH1 lactoylglutathione lyase YP_001450324.1 1084806 D 467705 CDS YP_001450325.1 157150865 5599507 complement(1085256..1085996) 1 NC_009785.1 identified by match to protein family HMM PF00005; amino acid transport protein 1085996 5599507 SGO_1036 Streptococcus gordonii str. Challis substr. CH1 amino acid transport protein YP_001450325.1 1085256 R 467705 CDS YP_001450326.1 157150220 5598435 complement(1085996..1087453) 1 NC_009785.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease and substrate binding protein 1087453 5598435 SGO_1037 Streptococcus gordonii str. Challis substr. CH1 glutamine ABC transporter permease and substrate binding protein YP_001450326.1 1085996 R 467705 CDS YP_001450327.1 157149718 5599291 1087834..1089822 1 NC_009785.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1089822 uvrB 5599291 uvrB Streptococcus gordonii str. Challis substr. CH1 excinuclease ABC subunit B YP_001450327.1 1087834 D 467705 CDS YP_001450328.1 157151453 5599587 1089930..1090706 1 NC_009785.1 hypothetical protein 1090706 5599587 SGO_1039 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450328.1 1089930 D 467705 CDS YP_001450329.1 157150989 5598727 1090738..1091235 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1091235 5598727 SGO_1040 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450329.1 1090738 D 467705 CDS YP_001450330.1 157150517 5598198 1091271..1091816 1 NC_009785.1 identified by match to protein family HMM PF08002; hypothetical protein 1091816 5598198 SGO_1041 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450330.1 1091271 D 467705 CDS YP_001450331.1 157150703 5599076 complement(1091791..1091916) 1 NC_009785.1 hypothetical protein 1091916 5599076 SGO_1042 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450331.1 1091791 R 467705 CDS YP_001450332.1 157150249 5598737 1092344..1092787 1 NC_009785.1 hypothetical protein 1092787 5598737 SGO_1043 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450332.1 1092344 D 467705 CDS YP_001450333.1 157149787 5599254 1092811..1093278 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1093278 5599254 SGO_1044 Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001450333.1 1092811 D 467705 CDS YP_001450334.1 157151417 5598361 complement(1093319..1093831) 1 NC_009785.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279; transcriptional regulator 1093831 5598361 SGO_1045 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001450334.1 1093319 R 467705 CDS YP_001450335.1 157151020 5598483 complement(1093870..1094397) 1 NC_009785.1 hypothetical protein 1094397 5598483 SGO_1046 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450335.1 1093870 R 467705 CDS YP_001450336.1 157150113 5598118 1094558..1095832 1 NC_009785.1 hypothetical protein 1095832 5598118 SGO_1047 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450336.1 1094558 D 467705 CDS YP_001450337.1 157150573 5598211 1095844..1096650 1 NC_009785.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1096650 5598211 SGO_1048 Streptococcus gordonii str. Challis substr. CH1 alpha/beta fold family hydrolase YP_001450337.1 1095844 D 467705 CDS YP_001450338.1 157151295 5598966 1096654..1097532 1 NC_009785.1 tRNA pseudouridine 55synthase; Psi55 synthase; Pseudouridine synthase; Uracilhydrolyase; catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1097532 truB 5598966 truB Streptococcus gordonii str. Challis substr. CH1 tRNA pseudouridine synthase B YP_001450338.1 1096654 D 467705 CDS YP_001450339.1 157151108 5599079 1097555..1098472 1 NC_009785.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1098472 ribF 5599079 ribF Streptococcus gordonii str. Challis substr. CH1 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001450339.1 1097555 D 467705 CDS YP_001450340.1 157150765 5597931 1098562..1098963 1 NC_009785.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 1098963 spxA 5597931 spxA Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator Spx YP_001450340.1 1098562 D 467705 CDS YP_001450341.1 157151220 5598630 1098967..1099245 1 NC_009785.1 identified by match to protein family HMM PF05256; hypothetical protein 1099245 5598630 SGO_1052 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450341.1 1098967 D 467705 CDS YP_001450342.1 157149868 5597740 1099235..1100008 1 NC_009785.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1100008 app 5597740 app Streptococcus gordonii str. Challis substr. CH1 inositol monophosphatase family protein YP_001450342.1 1099235 D 467705 CDS YP_001450343.1 157150359 5598982 1100009..1101313 1 NC_009785.1 identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein 1101313 5598982 SGO_1054 Streptococcus gordonii str. Challis substr. CH1 NOL1/NOP2/sun family protein YP_001450343.1 1100009 D 467705 CDS YP_001450344.1 157150714 5599380 1101410..1102291 1 NC_009785.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate transport protein 1102291 5599380 SGO_1055 Streptococcus gordonii str. Challis substr. CH1 phosphate transport protein YP_001450344.1 1101410 D 467705 CDS YP_001450345.1 157151308 5598715 1102288..1103205 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate transport protein PstC 1103205 pstC 5598715 pstC Streptococcus gordonii str. Challis substr. CH1 phosphate transport protein PstC YP_001450345.1 1102288 D 467705 CDS YP_001450346.1 157149999 5599668 1103195..1104079 1 NC_009785.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate permease PstA 1104079 pstA 5599668 pstA Streptococcus gordonii str. Challis substr. CH1 phosphate permease PstA YP_001450346.1 1103195 D 467705 CDS YP_001450347.1 157150414 5599290 1104090..1104893 1 NC_009785.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1104893 pstB2 5599290 pstB2 Streptococcus gordonii str. Challis substr. CH1 phosphate transporter ATP-binding protein YP_001450347.1 1104090 D 467705 CDS YP_001450348.1 157151178 5599272 1104944..1105702 1 NC_009785.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1105702 pstB1 5599272 pstB1 Streptococcus gordonii str. Challis substr. CH1 phosphate transporter ATP-binding protein YP_001450348.1 1104944 D 467705 CDS YP_001450349.1 157150142 5597815 1105724..1106377 1 NC_009785.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein 1106377 5597815 SGO_1060 Streptococcus gordonii str. Challis substr. CH1 phosphate transport system regulatory protein YP_001450349.1 1105724 D 467705 CDS YP_001450350.1 157151227 5598392 1106530..1107150 1 NC_009785.1 hypothetical protein 1107150 5598392 SGO_1061 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450350.1 1106530 D 467705 CDS YP_001450351.1 157150894 5599544 1107206..1107826 1 NC_009785.1 hypothetical protein 1107826 5599544 SGO_1062 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450351.1 1107206 D 467705 CDS YP_001450352.1 157150280 5598385 1107863..1108471 1 NC_009785.1 hypothetical protein 1108471 5598385 SGO_1063 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450352.1 1107863 D 467705 CDS YP_001450353.1 157150516 5599039 1108701..1109270 1 NC_009785.1 hypothetical protein 1109270 5599039 SGO_1064 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450353.1 1108701 D 467705 CDS YP_001450354.1 157151463 5599077 1109463..1110026 1 NC_009785.1 hypothetical protein 1110026 5599077 SGO_1065 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450354.1 1109463 D 467705 CDS YP_001450355.1 157151672 5598274 1110017..1111339 1 NC_009785.1 hypothetical protein 1111339 5598274 SGO_1066 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450355.1 1110017 D 467705 CDS YP_001450356.1 157150269 5599569 1111350..1111646 1 NC_009785.1 hypothetical protein 1111646 5599569 SGO_1067 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450356.1 1111350 D 467705 CDS YP_001450357.1 157149717 5598066 1111655..1111981 1 NC_009785.1 hypothetical protein 1111981 5598066 SGO_1068 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450357.1 1111655 D 467705 CDS YP_001450358.1 157150456 5599219 1112112..1114655 1 NC_009785.1 identified by match to protein family HMM PF01433; membrane alanyl aminopeptidase 1114655 5599219 SGO_1069 Streptococcus gordonii str. Challis substr. CH1 membrane alanyl aminopeptidase YP_001450358.1 1112112 D 467705 CDS YP_001450359.1 157149985 5599191 complement(1114712..1115254) 1 NC_009785.1 identified by match to protein family HMM PF02632; biotin synthase 1115254 bioY-2 5599191 bioY-2 Streptococcus gordonii str. Challis substr. CH1 biotin synthase YP_001450359.1 1114712 R 467705 CDS YP_001450360.1 157150366 5599648 1115466..1115921 1 NC_009785.1 hypothetical protein 1115921 5599648 SGO_1071 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450360.1 1115466 D 467705 CDS YP_001450361.1 157150145 5599368 1116052..1116726 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein CiaR 1116726 ciaR 5599368 ciaR Streptococcus gordonii str. Challis substr. CH1 transcriptional regulatory protein CiaR YP_001450361.1 1116052 D 467705 CDS YP_001450362.1 157151264 5599591 1116716..1118116 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein CiaH 1118116 5599591 SGO_1073 Streptococcus gordonii str. Challis substr. CH1 sensor protein CiaH YP_001450362.1 1116716 D 467705 CDS YP_001450363.1 157151104 5598986 1118118..1119044 1 NC_009785.1 identified by match to protein family HMM PF02558; hypothetical protein 1119044 5598986 SGO_1074 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450363.1 1118118 D 467705 CDS YP_001450364.1 157150638 5597937 complement(1119068..1120519) 1 NC_009785.1 converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 1120519 5597937 SGO_1075 Streptococcus gordonii str. Challis substr. CH1 alpha-amylase YP_001450364.1 1119068 R 467705 CDS YP_001450365.1 157151412 5598858 complement(1120746..1120988) 1 NC_009785.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1120988 rpsT 5598858 rpsT Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S20 YP_001450365.1 1120746 R 467705 CDS YP_001450366.1 157151473 5599589 complement(1121091..1122011) 1 NC_009785.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1122011 coaA 5599589 coaA Streptococcus gordonii str. Challis substr. CH1 pantothenate kinase YP_001450366.1 1121091 R 467705 CDS YP_001450367.1 157150082 5598881 1122116..1122709 1 NC_009785.1 MTS; identified by match to protein family HMM PF05175; Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyl-transferase C as well as other methyltransferases; pfam05175; methyltransferase domain-containing protein 1122709 5598881 SGO_1078 Streptococcus gordonii str. Challis substr. CH1 methyltransferase domain-containing protein YP_001450367.1 1122116 D 467705 CDS YP_001450368.1 157150666 5598041 1122706..1123983 1 NC_009785.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 1123983 pdp 5598041 pdp Streptococcus gordonii str. Challis substr. CH1 pyrimidine-nucleoside phosphorylase YP_001450368.1 1122706 D 467705 CDS YP_001450369.1 157151043 5598813 1124001..1124663 1 NC_009785.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1124663 deoC 5598813 deoC Streptococcus gordonii str. Challis substr. CH1 deoxyribose-phosphate aldolase YP_001450369.1 1124001 D 467705 CDS YP_001450370.1 157151580 5598065 1124650..1125039 1 NC_009785.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1125039 cdd 5598065 cdd Streptococcus gordonii str. Challis substr. CH1 cytidine deaminase YP_001450370.1 1124650 D 467705 CDS YP_001450371.1 157150092 5599742 1125110..1126168 1 NC_009785.1 identified by match to protein family HMM PF02608; lipoprotein 1126168 5599742 SGO_1082 Streptococcus gordonii str. Challis substr. CH1 lipoprotein YP_001450371.1 1125110 D 467705 CDS YP_001450372.1 157150810 5597971 1126308..1127843 1 NC_009785.1 identified by match to protein family HMM PF00005; sugar transport protein SP0846 1127843 5597971 SGO_1083 Streptococcus gordonii str. Challis substr. CH1 sugar transport protein SP0846 YP_001450372.1 1126308 D 467705 CDS YP_001450373.1 157151305 5598545 1127836..1128894 1 NC_009785.1 identified by match to protein family HMM PF02653; sugar ABC transporter permease 1128894 5598545 SGO_1084 Streptococcus gordonii str. Challis substr. CH1 sugar ABC transporter permease YP_001450373.1 1127836 D 467705 CDS YP_001450374.1 157149780 5599185 1128896..1129852 1 NC_009785.1 ABC transporter; identified by match to protein family HMM PF02653; permease 1129852 5599185 SGO_1085 Streptococcus gordonii str. Challis substr. CH1 permease YP_001450374.1 1128896 D 467705 CDS YP_001450375.1 157150390 5598462 1129947..1130810 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1130810 5598462 SGO_1086 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450375.1 1129947 D 467705 CDS YP_001450376.1 157149925 5599321 1130887..1131783 1 NC_009785.1 identified by match to protein family HMM PF03595; exfoliative toxin A 1131783 5599321 SGO_1087 Streptococcus gordonii str. Challis substr. CH1 exfoliative toxin A YP_001450376.1 1130887 D 467705 CDS YP_001450377.1 157150504 5599145 1131878..1132786 1 NC_009785.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1132786 5599145 SGO_1088 Streptococcus gordonii str. Challis substr. CH1 LysR family transcriptional regulator YP_001450377.1 1131878 D 467705 CDS YP_001450378.1 157150312 5599103 1132783..1133250 1 NC_009785.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1133250 lspA 5599103 lspA Streptococcus gordonii str. Challis substr. CH1 lipoprotein signal peptidase YP_001450378.1 1132783 D 467705 CDS YP_001450379.1 157150916 5599453 1133234..1134124 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1134124 5599453 SGO_1090 Streptococcus gordonii str. Challis substr. CH1 RluA family pseudouridine synthase YP_001450379.1 1133234 D 467705 CDS YP_001450380.1 157151298 5598336 1134220..1134750 1 NC_009785.1 hypothetical protein 1134750 5598336 SGO_1091 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450380.1 1134220 D 467705 CDS YP_001450381.1 157150066 5598257 1134763..1135023 1 NC_009785.1 hypothetical protein 1135023 5598257 SGO_1092 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450381.1 1134763 D 467705 CDS YP_001450382.1 157150675 5598739 1135149..1135871 1 NC_009785.1 hypothetical protein 1135871 5598739 SGO_1093 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450382.1 1135149 D 467705 CDS YP_001450383.1 157151154 5598796 1135873..1136595 1 NC_009785.1 hypothetical protein 1136595 5598796 SGO_1094 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450383.1 1135873 D 467705 CDS YP_001450384.1 157151585 5597860 1136623..1137156 1 NC_009785.1 hypothetical protein 1137156 5597860 SGO_1095 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450384.1 1136623 D 467705 CDS YP_001450385.1 157151380 5598557 1137405..1138169 1 NC_009785.1 identified by match to protein family HMM PF00106; match to protein family HMM PF03446; match to protein family HMM PF08659; match to protein family HMM TIGR02415; acetoin reductase 1138169 butA 5598557 butA Streptococcus gordonii str. Challis substr. CH1 acetoin reductase YP_001450385.1 1137405 D 467705 CDS YP_001450386.1 157150544 5599794 1138414..1139523 1 NC_009785.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1139523 proB 5599794 proB Streptococcus gordonii str. Challis substr. CH1 gamma-glutamyl kinase YP_001450386.1 1138414 D 467705 CDS YP_001450387.1 157149966 5599026 1139545..1140807 1 NC_009785.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1140807 proA 5599026 proA Streptococcus gordonii str. Challis substr. CH1 gamma-glutamyl phosphate reductase YP_001450387.1 1139545 D 467705 CDS YP_001450388.1 157151608 5598751 1140810..1141616 1 NC_009785.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1141616 proC 5598751 proC Streptococcus gordonii str. Challis substr. CH1 pyrroline-5-carboxylate reductase YP_001450388.1 1140810 D 467705 CDS YP_001450389.1 157151153 5598343 1141683..1142021 1 NC_009785.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA 1142021 phnA 5598343 phnA Streptococcus gordonii str. Challis substr. CH1 alkylphosphonate utilization operon protein PhnA YP_001450389.1 1141683 D 467705 CDS YP_001450390.1 157150559 5597861 1142041..1142661 1 NC_009785.1 hypothetical protein 1142661 5597861 SGO_1101 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450390.1 1142041 D 467705 CDS YP_001450391.1 157149954 5599002 1142924..1143115 1 NC_009785.1 identified by similarity to SP:P39765; PyrR bifunctional protein 1143115 5599002 SGO_1102 Streptococcus gordonii str. Challis substr. CH1 PyrR bifunctional protein YP_001450391.1 1142924 D 467705 CDS YP_001450392.1 157150949 5599654 1143255..1144331 1 NC_009785.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1144331 carA 5599654 carA Streptococcus gordonii str. Challis substr. CH1 carbamoyl phosphate synthase small subunit YP_001450392.1 1143255 D 467705 CDS YP_001450393.1 157150233 5598282 1144355..1147534 1 NC_009785.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1147534 carB 5598282 carB Streptococcus gordonii str. Challis substr. CH1 carbamoyl phosphate synthase large subunit YP_001450393.1 1144355 D 467705 CDS YP_001450394.1 157149678 5598464 1147682..1147972 1 NC_009785.1 hypothetical protein 1147972 5598464 SGO_1105 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450394.1 1147682 D 467705 CDS YP_001450395.1 157151275 5598366 1148039..1148185 1 NC_009785.1 hypothetical protein 1148185 5598366 SGO_1106 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450395.1 1148039 D 467705 CDS YP_001450396.1 157150954 5599033 1148372..1148893 1 NC_009785.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1148893 5599033 SGO_1107 Streptococcus gordonii str. Challis substr. CH1 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001450396.1 1148372 D 467705 CDS YP_001450397.1 157151548 5598269 1148902..1150185 1 NC_009785.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1150185 5598269 SGO_1108 Streptococcus gordonii str. Challis substr. CH1 uracil permease YP_001450397.1 1148902 D 467705 CDS YP_001450398.1 157150043 5597902 1150289..1151209 1 NC_009785.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1151209 pyrB 5597902 pyrB Streptococcus gordonii str. Challis substr. CH1 aspartate carbamoyltransferase catalytic subunit YP_001450398.1 1150289 D 467705 CDS YP_001450399.1 157150676 5599756 1151424..1153679 1 NC_009785.1 identified by match to protein family HMM PF00188; surface antigen SCP-like domain-containing protein 1153679 5599756 SGO_1110 Streptococcus gordonii str. Challis substr. CH1 surface antigen SCP-like domain-containing protein YP_001450399.1 1151424 D 467705 CDS YP_001450400.1 157150247 5598795 1153818..1154561 1 NC_009785.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; phosphotransferase system repressor 1154561 fruR 5598795 fruR Streptococcus gordonii str. Challis substr. CH1 phosphotransferase system repressor YP_001450400.1 1153818 D 467705 CDS YP_001450401.1 157151100 5599499 1154558..1155469 1 NC_009785.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 1-phosphofructokinase 1155469 fruB 5599499 fruB Streptococcus gordonii str. Challis substr. CH1 1-phosphofructokinase YP_001450401.1 1154558 D 467705 CDS YP_001450402.1 157151408 5597944 1155466..1157427 1 NC_009785.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system fructose specific transporter subunit IIABC 1157427 fruA 5597944 fruA Streptococcus gordonii str. Challis substr. CH1 PTS system fructose specific transporter subunit IIABC YP_001450402.1 1155466 D 467705 CDS YP_001450403.1 157149667 5598104 1157579..1157953 1 NC_009785.1 identified by match to protein family HMM PF06619; hypothetical protein 1157953 5598104 SGO_1114 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450403.1 1157579 D 467705 CDS YP_001450404.1 157150722 5598482 1157954..1158805 1 NC_009785.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 1158805 5598482 SGO_1115 Streptococcus gordonii str. Challis substr. CH1 DegV family protein YP_001450404.1 1157954 D 467705 CDS YP_001450405.1 157151360 5598704 1158836..1159603 1 NC_009785.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1159603 dapB 5598704 dapB Streptococcus gordonii str. Challis substr. CH1 dihydrodipicolinate reductase YP_001450405.1 1158836 D 467705 CDS YP_001450406.1 157150439 5598031 1159600..1160799 1 NC_009785.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1160799 pcnA 5598031 pcnA Streptococcus gordonii str. Challis substr. CH1 tRNA CCA-pyrophosphorylase YP_001450406.1 1159600 D 467705 CDS YP_001450407.1 157150085 5599225 1160796..1162661 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1162661 5599225 SGO_1118 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450407.1 1160796 D 467705 CDS YP_001450408.1 157150448 5598669 complement(1162811..1163959) 1 NC_009785.1 identified by match to protein family HMM PF04326; Abi-alpha protein 1163959 5598669 SGO_1119 Streptococcus gordonii str. Challis substr. CH1 Abi-alpha protein YP_001450408.1 1162811 R 467705 CDS YP_001450409.1 157149979 5599205 complement(1164136..1165692) 1 NC_009785.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1165692 guaA 5599205 guaA Streptococcus gordonii str. Challis substr. CH1 GMP synthase YP_001450409.1 1164136 R 467705 CDS YP_001450410.1 157151374 5597781 1165835..1166533 1 NC_009785.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1166533 5597781 SGO_1121 Streptococcus gordonii str. Challis substr. CH1 GntR family transcriptional regulator YP_001450410.1 1165835 D 467705 CDS YP_001450411.1 157150947 5598180 1166693..1167025 1 NC_009785.1 identified by match to protein family HMM PF04297; match to protein family HMM PF08281; putative DNA-binding protein 1167025 5598180 SGO_1122 Streptococcus gordonii str. Challis substr. CH1 putative DNA-binding protein YP_001450411.1 1166693 D 467705 CDS YP_001450412.1 157150208 5598284 1167272..1168846 1 NC_009785.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1168846 ffh 5598284 ffh Streptococcus gordonii str. Challis substr. CH1 signal recognition particle protein YP_001450412.1 1167272 D 467705 CDS YP_001450413.1 157149652 5597752 1168925..1169728 1 NC_009785.1 identified by match to protein family HMM PF06028; cell surface hydrolase 1169728 5597752 SGO_1124 Streptococcus gordonii str. Challis substr. CH1 cell surface hydrolase YP_001450413.1 1168925 D 467705 CDS YP_001450414.1 157150027 5598658 1170166..1170786 1 NC_009785.1 hypothetical protein 1170786 5598658 SGO_1125 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450414.1 1170166 D 467705 CDS YP_001450415.1 157151597 5599505 1171511..1172581 1 NC_009785.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1172581 xerS 5599505 xerS Streptococcus gordonii str. Challis substr. CH1 site-specific tyrosine recombinase XerS YP_001450415.1 1171511 D 467705 CDS YP_001450416.1 157150855 5599660 complement(1172658..1173290) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter; ATP-binding transport protein 1173290 5599660 SGO_1127 Streptococcus gordonii str. Challis substr. CH1 ATP-binding transport protein YP_001450416.1 1172658 R 467705 CDS YP_001450417.1 157151410 5598452 complement(1173292..1175370) 1 NC_009785.1 identified by match to protein family HMM TIGR01654; hypothetical protein 1175370 5598452 SGO_1128 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450417.1 1173292 R 467705 CDS YP_001450418.1 157149679 5598195 complement(1175450..1176439) 1 NC_009785.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate protein ligase A 1176439 lplA 5598195 lplA Streptococcus gordonii str. Challis substr. CH1 lipoate protein ligase A YP_001450418.1 1175450 R 467705 CDS YP_001450419.1 157150243 5598323 complement(1176506..1178209) 1 NC_009785.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 1178209 5598323 SGO_1130 Streptococcus gordonii str. Challis substr. CH1 dihydrolipoamide dehydrogenase YP_001450419.1 1176506 R 467705 CDS YP_001450420.1 157151137 5599173 complement(1178288..1179331) 1 NC_009785.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain; dihydrolipoamide acetyltransferase 1179331 sucB 5599173 sucB Streptococcus gordonii str. Challis substr. CH1 dihydrolipoamide acetyltransferase YP_001450420.1 1178288 R 467705 CDS YP_001450421.1 157151664 5597884 complement(1179671..1180663) 1 NC_009785.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; acetoin dehydrogenase 1180663 5597884 SGO_1132 Streptococcus gordonii str. Challis substr. CH1 acetoin dehydrogenase YP_001450421.1 1179671 R 467705 CDS YP_001450422.1 157149908 5599631 complement(1180680..1181648) 1 NC_009785.1 identified by match to protein family HMM PF00676; acetoin dehydrogenase 1181648 acoA 5599631 acoA Streptococcus gordonii str. Challis substr. CH1 acetoin dehydrogenase YP_001450422.1 1180680 R 467705 CDS YP_001450423.1 157150500 5599436 complement(1181865..1183031) 1 NC_009785.1 hypothetical protein 1183031 5599436 SGO_1134 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450423.1 1181865 R 467705 CDS YP_001450424.1 157151078 5599113 complement(1183044..1183784) 1 NC_009785.1 identified by match to protein family HMM PF00756; esterase superfamily protein 1183784 5599113 SGO_1135 Streptococcus gordonii str. Challis substr. CH1 esterase superfamily protein YP_001450424.1 1183044 R 467705 CDS YP_001450425.1 157151671 5597988 complement(1183834..1184682) 1 NC_009785.1 identified by match to protein family HMM PF00756; esterase superfamily protein 1184682 5597988 SGO_1136 Streptococcus gordonii str. Challis substr. CH1 esterase superfamily protein YP_001450425.1 1183834 R 467705 CDS YP_001450426.1 157149692 5597972 complement(1184752..1185549) 1 NC_009785.1 identified by match to protein family HMM PF01226; formate-nitrate transporter 1185549 5597972 SGO_1137 Streptococcus gordonii str. Challis substr. CH1 formate-nitrate transporter YP_001450426.1 1184752 R 467705 CDS YP_001450427.1 157150659 5598147 complement(1185677..1186366) 1 NC_009785.1 identified by match to protein family HMM PF01832; autolysin, N-acetylmuramidase-like protein 1186366 5598147 SGO_1138 Streptococcus gordonii str. Challis substr. CH1 autolysin, N-acetylmuramidase-like protein YP_001450427.1 1185677 R 467705 CDS YP_001450428.1 157151518 5598825 complement(1186500..1187093) 1 NC_009785.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1187093 engB 5598825 engB Streptococcus gordonii str. Challis substr. CH1 ribosome biogenesis GTP-binding protein YsxC YP_001450428.1 1186500 R 467705 CDS YP_001450429.1 157149993 5599285 complement(1187103..1188332) 1 NC_009785.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1188332 clpX 5599285 clpX Streptococcus gordonii str. Challis substr. CH1 ATP-dependent protease ATP-binding subunit ClpX YP_001450429.1 1187103 R 467705 CDS YP_001450430.1 157150827 5599813 complement(1188541..1189053) 1 NC_009785.1 identified by match to protein family HMM PF00186; dihydrofolate reductase 1189053 folA 5599813 folA Streptococcus gordonii str. Challis substr. CH1 dihydrofolate reductase YP_001450430.1 1188541 R 467705 CDS YP_001450431.1 157151426 5598518 complement(1189206..1189700) 1 NC_009785.1 hypothetical protein 1189700 5598518 SGO_1142 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450431.1 1189206 R 467705 CDS YP_001450432.1 157151425 5599703 complement(1189831..1190670) 1 NC_009785.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1190670 thyA 5599703 thyA Streptococcus gordonii str. Challis substr. CH1 thymidylate synthase YP_001450432.1 1189831 R 467705 CDS YP_001450433.1 157149774 5598372 complement(1190769..1191728) 1 NC_009785.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase 1191728 glcK 5598372 glcK Streptococcus gordonii str. Challis substr. CH1 glucokinase YP_001450433.1 1190769 R 467705 CDS YP_001450434.1 157150618 5598488 complement(1191903..1192748) 1 NC_009785.1 identified by match to protein family HMM PF06028; cell surface hydrolase 1192748 5598488 SGO_1145 Streptococcus gordonii str. Challis substr. CH1 cell surface hydrolase YP_001450434.1 1191903 R 467705 CDS YP_001450435.1 157150842 5599357 complement(1194141..1201019) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; surface-associated protein CshB 1201019 cshB 5599357 cshB Streptococcus gordonii str. Challis substr. CH1 surface-associated protein CshB YP_001450435.1 1194141 R 467705 CDS YP_001450436.1 157151024 5598478 complement(1201197..1201799) 1 NC_009785.1 vaccine antigen A-like protein 1201799 5598478 SGO_1149 Streptococcus gordonii str. Challis substr. CH1 vaccine antigen A-like protein YP_001450436.1 1201197 R 467705 CDS YP_001450437.1 157151526 5598108 complement(1201799..1202773) 1 NC_009785.1 hypothetical protein 1202773 5598108 SGO_1150 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450437.1 1201799 R 467705 CDS YP_001450438.1 157150115 5598919 complement(1202775..1204037) 1 NC_009785.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1204037 glyA 5598919 glyA Streptococcus gordonii str. Challis substr. CH1 serine hydroxymethyltransferase YP_001450438.1 1202775 R 467705 CDS YP_001450439.1 157150566 5598101 complement(1204085..1204705) 1 NC_009785.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1204705 5598101 SGO_1152 Streptococcus gordonii str. Challis substr. CH1 Sua5/YciO/YrdC/YwlC family protein YP_001450439.1 1204085 R 467705 CDS YP_001450440.1 157150169 5598984 complement(1204668..1205498) 1 NC_009785.1 identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protoporphyrinogen oxidase 1205498 5598984 SGO_1153 Streptococcus gordonii str. Challis substr. CH1 protoporphyrinogen oxidase YP_001450440.1 1204668 R 467705 CDS YP_001450441.1 157150598 5599241 complement(1205498..1206577) 1 NC_009785.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1206577 prfA 5599241 prfA Streptococcus gordonii str. Challis substr. CH1 peptide chain release factor 1 YP_001450441.1 1205498 R 467705 CDS YP_001450442.1 157151272 5598929 complement(1206610..1207185) 1 NC_009785.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1207185 tdk 5598929 tdk Streptococcus gordonii str. Challis substr. CH1 thymidine kinase YP_001450442.1 1206610 R 467705 CDS YP_001450443.1 157149773 5599292 1207307..1207489 1 NC_009785.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1207489 5599292 SGO_1156 Streptococcus gordonii str. Challis substr. CH1 4-oxalocrotonate tautomerase YP_001450443.1 1207307 D 467705 CDS YP_001450444.1 157150333 5598401 complement(1207602..1208903) 1 NC_009785.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease 1208903 pbuX 5598401 pbuX Streptococcus gordonii str. Challis substr. CH1 xanthine permease YP_001450444.1 1207602 R 467705 CDS YP_001450445.1 157151362 5599421 complement(1208869..1209450) 1 NC_009785.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1209450 xpt 5599421 xpt Streptococcus gordonii str. Challis substr. CH1 xanthine phosphoribosyltransferase YP_001450445.1 1208869 R 467705 CDS YP_001450446.1 157149867 5598043 complement(1209631..1210614) 1 NC_009785.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 1210614 guaC 5598043 guaC Streptococcus gordonii str. Challis substr. CH1 guanosine 5'-monophosphate oxidoreductase YP_001450446.1 1209631 R 467705 CDS YP_001450447.1 157150447 5598215 complement(1210799..1212136) 1 NC_009785.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1212136 5598215 SGO_1160 Streptococcus gordonii str. Challis substr. CH1 MATE efflux family protein YP_001450447.1 1210799 R 467705 CDS YP_001450448.1 157151040 5599207 complement(1212207..1212398) 1 NC_009785.1 identified by match to protein family HMM PF02416; twin arginine-targeting protein translocase 1212398 tatA 5599207 tatA Streptococcus gordonii str. Challis substr. CH1 twin arginine-targeting protein translocase YP_001450448.1 1212207 R 467705 CDS YP_001450449.1 157150071 5598069 complement(1212398..1213114) 1 NC_009785.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 1213114 tatC 5598069 tatC Streptococcus gordonii str. Challis substr. CH1 Sec-independent protein translocase TatC YP_001450449.1 1212398 R 467705 CDS YP_001450450.1 157149693 5598924 complement(1213104..1214798) 1 NC_009785.1 identified by match to protein family HMM PF03239; FTR1 family iron permease 1214798 5598924 SGO_1163 Streptococcus gordonii str. Challis substr. CH1 FTR1 family iron permease YP_001450450.1 1213104 R 467705 CDS YP_001450451.1 157150275 5598137 complement(1214776..1215984) 1 NC_009785.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; tat translocated dye-type peroxidase family protein 1215984 5598137 SGO_1164 Streptococcus gordonii str. Challis substr. CH1 tat translocated dye-type peroxidase family protein YP_001450451.1 1214776 R 467705 CDS YP_001450452.1 157150310 5599600 complement(1215989..1216864) 1 NC_009785.1 identified by match to protein family HMM PF04302; putative lipoprotein 1216864 5599600 SGO_1165 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450452.1 1215989 R 467705 CDS YP_001450453.1 157149928 5599457 complement(1217000..1218550) 1 NC_009785.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein 1218550 5599457 SGO_1166 Streptococcus gordonii str. Challis substr. CH1 voltage-gated chloride channel family protein YP_001450453.1 1217000 R 467705 CDS YP_001450454.1 157151684 5599492 complement(1218664..1220040) 1 NC_009785.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; NADH oxidase 1220040 nox 5599492 nox Streptococcus gordonii str. Challis substr. CH1 NADH oxidase YP_001450454.1 1218664 R 467705 CDS YP_001450455.1 157151128 5599126 1220349..1221248 1 NC_009785.1 identified by match to protein family HMM PF02424; thiamin biosynthesis lipoprotein 1221248 5599126 SGO_1168 Streptococcus gordonii str. Challis substr. CH1 thiamin biosynthesis lipoprotein YP_001450455.1 1220349 D 467705 CDS YP_001450456.1 157149764 5597903 1221268..1221873 1 NC_009785.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1221873 5597903 SGO_1169 Streptococcus gordonii str. Challis substr. CH1 NADPH-dependent FMN reductase YP_001450456.1 1221268 D 467705 CDS YP_001450457.1 157151476 5599697 1221891..1223135 1 NC_009785.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1223135 5599697 SGO_1170 Streptococcus gordonii str. Challis substr. CH1 NADPH-dependent FMN reductase YP_001450457.1 1221891 D 467705 CDS YP_001450458.1 157149670 5598821 complement(1223188..1223670) 1 NC_009785.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein 1223670 5598821 SGO_1171 Streptococcus gordonii str. Challis substr. CH1 thioredoxin family protein YP_001450458.1 1223188 R 467705 CDS YP_001450459.1 157151448 5598427 1223648..1223764 1 NC_009785.1 hypothetical protein 1223764 5598427 SGO_1172 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450459.1 1223648 D 467705 CDS YP_001450460.1 157150763 5599699 complement(1223822..1224532) 1 NC_009785.1 identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein 1224532 ccdA2 5599699 ccdA2 Streptococcus gordonii str. Challis substr. CH1 cytochrome c-type biogenesis protein YP_001450460.1 1223822 R 467705 CDS YP_001450461.1 157151469 5598632 complement(1224825..1226528) 1 NC_009785.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580; histidine kinase 1226528 5598632 SGO_1174 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001450461.1 1224825 R 467705 CDS YP_001450462.1 157151021 5598849 complement(1226525..1227259) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; response regulator 1227259 5598849 SGO_1175 Streptococcus gordonii str. Challis substr. CH1 response regulator YP_001450462.1 1226525 R 467705 CDS YP_001450463.1 157150365 5598117 complement(1227319..1228437) 1 NC_009785.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase-like protein 1228437 5598117 SGO_1176 Streptococcus gordonii str. Challis substr. CH1 peptide methionine sulfoxide reductase-like protein YP_001450463.1 1227319 R 467705 CDS YP_001450464.1 157149896 5599369 complement(1228455..1229018) 1 NC_009785.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein 1229018 5599369 SGO_1177 Streptococcus gordonii str. Challis substr. CH1 thioredoxin family protein YP_001450464.1 1228455 R 467705 CDS YP_001450465.1 157149672 5597818 complement(1229087..1229425) 1 NC_009785.1 putative lipoprotein 1229425 5597818 SGO_1178 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450465.1 1229087 R 467705 CDS YP_001450466.1 157151303 5598414 complement(1229453..1230163) 1 NC_009785.1 identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein 1230163 ccdA1 5598414 ccdA1 Streptococcus gordonii str. Challis substr. CH1 cytochrome c-type biogenesis protein YP_001450466.1 1229453 R 467705 CDS YP_001450467.1 157150574 5598484 complement(1230306..1231340) 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 1231340 5598484 SGO_1180 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001450467.1 1230306 R 467705 CDS YP_001450468.1 157150116 5598965 complement(1231337..1232035) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1232035 5598965 SGO_1181 Streptococcus gordonii str. Challis substr. CH1 DNA-binding response regulator YP_001450468.1 1231337 R 467705 CDS YP_001450469.1 157150937 5599677 complement(1232116..1234203) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; LPXTG cell wall surface protein 1234203 5599677 SGO_1182 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450469.1 1232116 R 467705 CDS YP_001450470.1 157149963 5598299 complement(1234528..1235856) 1 NC_009785.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1235856 brnQ 5598299 brnQ Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid transport system II carrier protein YP_001450470.1 1234528 R 467705 CDS YP_001450471.1 157149755 5599601 1236051..1237073 1 NC_009785.1 identified by match to protein family HMM PF02698; GdmH 1237073 5599601 SGO_1184 Streptococcus gordonii str. Challis substr. CH1 GdmH YP_001450471.1 1236051 D 467705 CDS YP_001450472.1 157150199 5599761 complement(1237122..1237676) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1237676 5599761 SGO_1185 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450472.1 1237122 R 467705 CDS YP_001450473.1 157151186 5598161 complement(1237792..1239573) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein 1239573 5598161 SGO_1186 Streptococcus gordonii str. Challis substr. CH1 permease ATP-binding protein YP_001450473.1 1237792 R 467705 CDS YP_001450474.1 157151644 5597805 complement(1239583..1241319) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein 1241319 5597805 SGO_1187 Streptococcus gordonii str. Challis substr. CH1 permease ATP-binding protein YP_001450474.1 1239583 R 467705 CDS YP_001450475.1 157149971 5597904 1241402..1241494 1 NC_009785.1 hypothetical protein 1241494 5597904 SGO_1188 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450475.1 1241402 D 467705 CDS YP_001450476.1 157150441 5597977 complement(1241581..1242042) 1 NC_009785.1 putative lipoprotein 1242042 5597977 SGO_1189 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450476.1 1241581 R 467705 CDS YP_001450477.1 157150008 5599223 1242231..1242641 1 NC_009785.1 hypothetical protein 1242641 5599223 SGO_1190 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450477.1 1242231 D 467705 CDS YP_001450478.1 157151014 5598410 complement(1242254..1242622) 1 NC_009785.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1242622 rplL 5598410 rplL Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L7/L12 YP_001450478.1 1242254 R 467705 CDS YP_001450479.1 157151499 5598131 complement(1242697..1243197) 1 NC_009785.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1243197 rplJ 5598131 rplJ Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L10 YP_001450479.1 1242697 R 467705 CDS YP_001450480.1 157150106 5598455 complement(1243450..1244784) 1 NC_009785.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1244784 gid 5598455 gid Streptococcus gordonii str. Challis substr. CH1 tRNA (uracil-5-)-methyltransferase Gid YP_001450480.1 1243450 R 467705 CDS YP_001450481.1 157151145 5599873 complement(1244935..1245429) 1 NC_009785.1 phosphoribosylanthranilate isomerase 1245429 5599873 SGO_1194 Streptococcus gordonii str. Challis substr. CH1 phosphoribosylanthranilate isomerase YP_001450481.1 1244935 R 467705 CDS YP_001450482.1 157149709 5597870 complement(1245449..1246156) 1 NC_009785.1 hypothetical protein 1246156 5597870 SGO_1195 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450482.1 1245449 R 467705 CDS YP_001450483.1 157151325 5599614 complement(1246140..1246823) 1 NC_009785.1 identified by similarity to GB:AAG28336.1; SatD-like protein 1246823 satD 5599614 satD Streptococcus gordonii str. Challis substr. CH1 SatD-like protein YP_001450483.1 1246140 R 467705 CDS YP_001450484.1 157150871 5599500 complement(1246933..1249026) 1 NC_009785.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1249026 topA 5599500 topA Streptococcus gordonii str. Challis substr. CH1 DNA topoisomerase I YP_001450484.1 1246933 R 467705 CDS YP_001450485.1 157150409 5598429 complement(1249110..1249952) 1 NC_009785.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing Smf protein 1249952 5598429 SGO_1198 Streptococcus gordonii str. Challis substr. CH1 DNA processing Smf protein YP_001450485.1 1249110 R 467705 CDS YP_001450486.1 157149942 5599279 complement(1250079..1250657) 1 NC_009785.1 identified by match to protein family HMM PF00132; acetyltransferase 1250657 5599279 SGO_1199 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450486.1 1250079 R 467705 CDS YP_001450487.1 157151577 5599081 complement(1250654..1251472) 1 NC_009785.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; beta-glucoside operon antiterminator 1251472 5599081 SGO_1200 Streptococcus gordonii str. Challis substr. CH1 beta-glucoside operon antiterminator YP_001450487.1 1250654 R 467705 CDS YP_001450488.1 157151005 5598772 complement(1251490..1252254) 1 NC_009785.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1252254 rnhB 5598772 rnhB Streptococcus gordonii str. Challis substr. CH1 ribonuclease HII YP_001450488.1 1251490 R 467705 CDS YP_001450489.1 157151133 5598151 complement(1252241..1253092) 1 NC_009785.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1253092 rbgA 5598151 rbgA Streptococcus gordonii str. Challis substr. CH1 ribosomal biogenesis GTPase YP_001450489.1 1252241 R 467705 CDS YP_001450490.1 157150561 5597894 complement(1253237..1253575) 1 NC_009785.1 identified by match to protein family HMM PF03477; anaerobic ribonucleotide reductase 1253575 5597894 SGO_1203 Streptococcus gordonii str. Challis substr. CH1 anaerobic ribonucleotide reductase YP_001450490.1 1253237 R 467705 CDS YP_001450491.1 157149936 5598996 complement(1253639..1253812) 1 NC_009785.1 hypothetical protein 1253812 5598996 SGO_1204 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450491.1 1253639 R 467705 CDS YP_001450492.1 157151432 5598154 complement(1253816..1254751) 1 NC_009785.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1254751 dapA 5598154 dapA Streptococcus gordonii str. Challis substr. CH1 dihydrodipicolinate synthase YP_001450492.1 1253816 R 467705 CDS YP_001450493.1 157150349 5598335 complement(1254960..1256036) 1 NC_009785.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1256036 asd 5598335 asd Streptococcus gordonii str. Challis substr. CH1 aspartate-semialdehyde dehydrogenase YP_001450493.1 1254960 R 467705 CDS YP_001450494.1 157149906 5599396 complement(1256509..1257168) 1 NC_009785.1 identified by match to protein family HMM PF08713; DNA alkylation repair protein 1257168 alkD 5599396 alkD Streptococcus gordonii str. Challis substr. CH1 DNA alkylation repair protein YP_001450494.1 1256509 R 467705 CDS YP_001450495.1 157151217 5598156 complement(1257172..1257663) 1 NC_009785.1 FAD-dependent oxidoreductase 1257663 5598156 SGO_1208 Streptococcus gordonii str. Challis substr. CH1 FAD-dependent oxidoreductase YP_001450495.1 1257172 R 467705 CDS YP_001450496.1 157150778 5597745 complement(1257777..1258313) 1 NC_009785.1 identified by match to protein family HMM PF00583; acyltransferase 1258313 5597745 SGO_1209 Streptococcus gordonii str. Challis substr. CH1 acyltransferase YP_001450496.1 1257777 R 467705 CDS YP_001450497.1 157150860 5598611 complement(1258385..1260055) 1 NC_009785.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1260055 fhs-1 5598611 fhs-1 Streptococcus gordonii str. Challis substr. CH1 formate--tetrahydrofolate ligase YP_001450497.1 1258385 R 467705 CDS YP_001450498.1 157150858 5598446 complement(1260238..1260762) 1 NC_009785.1 hypothetical protein 1260762 5598446 SGO_1211 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450498.1 1260238 R 467705 CDS YP_001450499.1 157151089 5598448 1260915..1261607 1 NC_009785.1 identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114; phosphopantothenate--cysteine ligase 1261607 coaB 5598448 coaB Streptococcus gordonii str. Challis substr. CH1 phosphopantothenate--cysteine ligase YP_001450499.1 1260915 D 467705 CDS YP_001450500.1 157149871 5597964 1261604..1262155 1 NC_009785.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.; phosphopantothenoylcysteine decarboxylase 1262155 coaC 5597964 coaC Streptococcus gordonii str. Challis substr. CH1 phosphopantothenoylcysteine decarboxylase YP_001450500.1 1261604 D 467705 CDS YP_001450501.1 157150186 5599517 1262139..1262702 1 NC_009785.1 membrane protein 1262702 5599517 SGO_1214 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001450501.1 1262139 D 467705 CDS YP_001450502.1 157150644 5598730 1262940..1264658 1 NC_009785.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 1264658 manB 5598730 manB Streptococcus gordonii str. Challis substr. CH1 phosphomannomutase YP_001450502.1 1262940 D 467705 CDS YP_001450503.1 157151383 5598847 1264770..1265117 1 NC_009785.1 identified by match to protein family HMM TIGR01295; bacteriocin transport accessory protein 1265117 bta 5598847 bta Streptococcus gordonii str. Challis substr. CH1 bacteriocin transport accessory protein YP_001450503.1 1264770 D 467705 CDS YP_001450504.1 157151690 5598227 complement(1265212..1265835) 1 NC_009785.1 putative lipoprotein 1265835 5598227 SGO_1217 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450504.1 1265212 R 467705 CDS YP_001450505.1 157149958 5599370 complement(1265895..1267043) 1 NC_009785.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 1267043 mutY 5599370 mutY Streptococcus gordonii str. Challis substr. CH1 A/G-specific adenine glycosylase YP_001450505.1 1265895 R 467705 CDS YP_001450506.1 157150537 5599573 complement(1267108..1268085) 1 NC_009785.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 1268085 eutD 5599573 eutD Streptococcus gordonii str. Challis substr. CH1 phosphotransacetylase YP_001450506.1 1267108 R 467705 CDS YP_001450507.1 157150847 5599040 complement(1268107..1268994) 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; 23S rRNA pseudouridine synthase 1268994 5599040 SGO_1220 Streptococcus gordonii str. Challis substr. CH1 23S rRNA pseudouridine synthase YP_001450507.1 1268107 R 467705 CDS YP_001450508.1 157149824 5598472 complement(1268984..1269808) 1 NC_009785.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1269808 ppnK 5598472 ppnK Streptococcus gordonii str. Challis substr. CH1 inorganic polyphosphate/ATP-NAD kinase YP_001450508.1 1268984 R 467705 CDS YP_001450509.1 157149687 5599555 complement(1269792..1270457) 1 NC_009785.1 identified by match to protein family HMM PF04607; GTP pyrophosphokinase-like protein 1270457 5599555 SGO_1222 Streptococcus gordonii str. Challis substr. CH1 GTP pyrophosphokinase-like protein YP_001450509.1 1269792 R 467705 CDS YP_001450510.1 157151331 5598223 1270560..1271129 1 NC_009785.1 identified by match to protein family HMM PF01928; adenylate cyclase 1271129 5598223 SGO_1223 Streptococcus gordonii str. Challis substr. CH1 adenylate cyclase YP_001450510.1 1270560 D 467705 CDS YP_001450511.1 157151025 5598083 1271189..1272157 1 NC_009785.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1272157 5598083 SGO_1224 Streptococcus gordonii str. Challis substr. CH1 ribose-phosphate pyrophosphokinase YP_001450511.1 1271189 D 467705 CDS YP_001450512.1 157150590 5598103 1272167..1273294 1 NC_009785.1 identified by match to protein family HMM PF00266; pyridoxal-phosphate dependent aminotransferase 1273294 5598103 SGO_1225 Streptococcus gordonii str. Challis substr. CH1 pyridoxal-phosphate dependent aminotransferase YP_001450512.1 1272167 D 467705 CDS YP_001450513.1 157150495 5598941 1273284..1273631 1 NC_009785.1 identified by match to protein family HMM PF08866; hypothetical protein 1273631 5598941 SGO_1226 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450513.1 1273284 D 467705 CDS YP_001450514.1 157150025 5599120 1273666..1273899 1 NC_009785.1 hypothetical protein 1273899 5599120 SGO_1227 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450514.1 1273666 D 467705 CDS YP_001450515.1 157150857 5598794 1274003..1274650 1 NC_009785.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1274650 5598794 SGO_1228 Streptococcus gordonii str. Challis substr. CH1 redox-sensing transcriptional repressor Rex YP_001450515.1 1274003 D 467705 CDS YP_001450516.1 157150253 5598449 complement(1274670..1275350) 1 NC_009785.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1275350 radC 5598449 radC Streptococcus gordonii str. Challis substr. CH1 DNA repair protein RadC YP_001450516.1 1274670 R 467705 CDS YP_001450517.1 157150910 5598325 complement(1275432..1276187) 1 NC_009785.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase A 1276187 srtA 5598325 srtA Streptococcus gordonii str. Challis substr. CH1 sortase A YP_001450517.1 1275432 R 467705 CDS YP_001450518.1 157151071 5598349 complement(1276191..1278644) 1 NC_009785.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1278644 gyrA 5598349 gyrA Streptococcus gordonii str. Challis substr. CH1 DNA gyrase subunit A YP_001450518.1 1276191 R 467705 CDS YP_001450519.1 157151525 5598010 1278842..1279828 1 NC_009785.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1279828 ldh 5598010 ldh Streptococcus gordonii str. Challis substr. CH1 L-lactate dehydrogenase YP_001450519.1 1278842 D 467705 CDS YP_001450520.1 157149853 5599108 complement(1280367..1281572) 1 NC_009785.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1281572 rpsA 5599108 rpsA Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S1 YP_001450520.1 1280367 R 467705 CDS YP_001450521.1 157149891 5599537 complement(1281992..1282222) 1 NC_009785.1 hypothetical protein 1282222 5599537 SGO_1237 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450521.1 1281992 R 467705 CDS YP_001450522.1 157150260 5599638 complement(1282321..1283343) 1 NC_009785.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1283343 ilvE 5599638 ilvE Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid aminotransferase YP_001450522.1 1282321 R 467705 CDS YP_001450523.1 157150712 5598720 complement(1283517..1285967) 1 NC_009785.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1285967 parC 5598720 parC Streptococcus gordonii str. Challis substr. CH1 DNA topoisomerase IV subunit A YP_001450523.1 1283517 R 467705 CDS YP_001450524.1 157150098 5598718 complement(1286020..1286754) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 1286754 5598718 SGO_1240 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001450524.1 1286020 R 467705 CDS YP_001450525.1 157150112 5598002 complement(1286735..1287568) 1 NC_009785.1 identified by match to protein family HMM PF04439; aminoglycoside adenylyltransferase 1287568 5598002 SGO_1241 Streptococcus gordonii str. Challis substr. CH1 aminoglycoside adenylyltransferase YP_001450525.1 1286735 R 467705 CDS YP_001450526.1 157150226 5599584 complement(1287709..1288059) 1 NC_009785.1 putative lipoprotein 1288059 5599584 SGO_1242 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450526.1 1287709 R 467705 CDS YP_001450527.1 157150753 5599853 complement(1288098..1288376) 1 NC_009785.1 hypothetical protein 1288376 5599853 SGO_1243 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450527.1 1288098 R 467705 CDS YP_001450528.1 157151135 5598650 complement(1288725..1290125) 1 NC_009785.1 hypothetical protein 1290125 5598650 SGO_1244 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450528.1 1288725 R 467705 CDS YP_001450529.1 157151650 5597887 complement(1290293..1292242) 1 NC_009785.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1292242 parE 5597887 parE Streptococcus gordonii str. Challis substr. CH1 DNA topoisomerase IV subunit B YP_001450529.1 1290293 R 467705 CDS YP_001450530.1 157149914 5599640 1292405..1293049 1 NC_009785.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1293049 5599640 SGO_1246 Streptococcus gordonii str. Challis substr. CH1 putative glycerol-3-phosphate acyltransferase PlsY YP_001450530.1 1292405 D 467705 CDS YP_001450531.1 157150885 5599669 complement(1293067..1295253) 1 NC_009785.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01167; 5'-nucleotidase 1295253 5599669 SGO_1247 Streptococcus gordonii str. Challis substr. CH1 5'-nucleotidase YP_001450531.1 1293067 R 467705 CDS YP_001450532.1 157151352 5598398 complement(1295394..1296662) 1 NC_009785.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1296662 pyrC 5598398 pyrC Streptococcus gordonii str. Challis substr. CH1 dihydroorotase YP_001450532.1 1295394 R 467705 CDS YP_001450533.1 157149707 5599097 complement(1296675..1297139) 1 NC_009785.1 identified by match to protein family HMM PF00293; Mutator mutT protein 1297139 mutX 5599097 mutX Streptococcus gordonii str. Challis substr. CH1 Mutator mutT protein YP_001450533.1 1296675 R 467705 CDS YP_001450534.1 157150183 5599509 complement(1297148..1297801) 1 NC_009785.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1297801 ung 5599509 ung Streptococcus gordonii str. Challis substr. CH1 uracil-DNA glycosylase YP_001450534.1 1297148 R 467705 CDS YP_001450535.1 157151174 5598774 complement(1297836..1298588) 1 NC_009785.1 hypothetical protein 1298588 5598774 SGO_1251 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450535.1 1297836 R 467705 CDS YP_001450536.1 157151633 5597822 complement(1298591..1300222) 1 NC_009785.1 integral membrane protein 1300222 5597822 SGO_1252 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450536.1 1298591 R 467705 CDS YP_001450537.1 157150170 5597788 complement(1300279..1300908) 1 NC_009785.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1300908 pyrE 5597788 pyrE Streptococcus gordonii str. Challis substr. CH1 orotate phosphoribosyltransferase YP_001450537.1 1300279 R 467705 CDS YP_001450538.1 157151386 5599184 complement(1300988..1301680) 1 NC_009785.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1301680 pyrF 5599184 pyrF Streptococcus gordonii str. Challis substr. CH1 orotidine 5'-phosphate decarboxylase YP_001450538.1 1300988 R 467705 CDS YP_001450539.1 157150915 5599643 complement(1301930..1302868) 1 NC_009785.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1302868 pyrd 5599643 pyrd Streptococcus gordonii str. Challis substr. CH1 dihydroorotate dehydrogenase 1B YP_001450539.1 1301930 R 467705 CDS YP_001450540.1 157151165 5598337 complement(1302881..1303687) 1 NC_009785.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 1303687 5598337 SGO_1256 Streptococcus gordonii str. Challis substr. CH1 dihydroorotate dehydrogenase electron transfer subunit YP_001450540.1 1302881 R 467705 CDS YP_001450541.1 157150437 5597839 1303875..1304783 1 NC_009785.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 1304783 5597839 SGO_1257 Streptococcus gordonii str. Challis substr. CH1 LysR family transcriptional regulator YP_001450541.1 1303875 D 467705 CDS YP_001450542.1 157149754 5599229 complement(1304824..1305555) 1 NC_009785.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1305555 5599229 SGO_1258 Streptococcus gordonii str. Challis substr. CH1 NAD-dependent deacetylase YP_001450542.1 1304824 R 467705 CDS YP_001450543.1 157151692 5599862 complement(1305567..1306328) 1 NC_009785.1 histidine protein kinase 1306328 5599862 SGO_1259 Streptococcus gordonii str. Challis substr. CH1 histidine protein kinase YP_001450543.1 1305567 R 467705 CDS YP_001450544.1 157150933 5599062 complement(1306325..1307038) 1 NC_009785.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1307038 deoD 5599062 deoD Streptococcus gordonii str. Challis substr. CH1 purine nucleoside phosphorylase YP_001450544.1 1306325 R 467705 CDS YP_001450545.1 157150288 5598308 complement(1307260..1307970) 1 NC_009785.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1307970 5598308 SGO_1261 Streptococcus gordonii str. Challis substr. CH1 glutamine amidotransferase YP_001450545.1 1307260 R 467705 CDS YP_001450546.1 157150813 5599486 complement(1307967..1309196) 1 NC_009785.1 identified by match to protein family HMM PF00654; voltage-gated chloride channel family lipoprotein 1309196 5599486 SGO_1262 Streptococcus gordonii str. Challis substr. CH1 voltage-gated chloride channel family lipoprotein YP_001450546.1 1307967 R 467705 CDS YP_001450547.1 157150342 5598537 complement(1309207..1310016) 1 NC_009785.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 1310016 5598537 SGO_1263 Streptococcus gordonii str. Challis substr. CH1 purine nucleoside phosphorylase YP_001450547.1 1309207 R 467705 CDS YP_001450548.1 157151496 5599408 complement(1310133..1311344) 1 NC_009785.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1311344 deoB 5599408 deoB Streptococcus gordonii str. Challis substr. CH1 phosphopentomutase YP_001450548.1 1310133 R 467705 CDS YP_001450549.1 157151378 5599732 complement(1311357..1312034) 1 NC_009785.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1312034 rpiA 5599732 rpiA Streptococcus gordonii str. Challis substr. CH1 ribose-5-phosphate isomerase A YP_001450549.1 1311357 R 467705 CDS YP_001450550.1 157149742 5598189 1312265..1313638 1 NC_009785.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1313638 trmE 5598189 trmE Streptococcus gordonii str. Challis substr. CH1 tRNA modification GTPase TrmE YP_001450550.1 1312265 D 467705 CDS YP_001450551.1 157150175 5599828 complement(1313789..1314292) 1 NC_009785.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein 1314292 5599828 SGO_1267 Streptococcus gordonii str. Challis substr. CH1 thioredoxin family protein YP_001450551.1 1313789 R 467705 CDS YP_001450552.1 157151197 5598972 complement(1314798..1315496) 1 NC_009785.1 identified by match to protein family HMM PF04172; murein hydrolase export regulator 1315496 5598972 SGO_1268 Streptococcus gordonii str. Challis substr. CH1 murein hydrolase export regulator YP_001450552.1 1314798 R 467705 CDS YP_001450553.1 157151624 5597783 complement(1315489..1315869) 1 NC_009785.1 identified by match to protein family HMM PF03788; murein hydrolase exporter 1315869 5597783 SGO_1269 Streptococcus gordonii str. Challis substr. CH1 murein hydrolase exporter YP_001450553.1 1315489 R 467705 CDS YP_001450554.1 157151184 5599835 complement(1316645..1316983) 1 NC_009785.1 identified by match to protein family HMM PF01883; hypothetical protein 1316983 5599835 SGO_1272 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450554.1 1316645 R 467705 CDS YP_001450555.1 157151547 5597807 complement(1317036..1318148) 1 NC_009785.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 1318148 rpoD 5597807 rpoD Streptococcus gordonii str. Challis substr. CH1 RNA polymerase sigma factor RpoD YP_001450555.1 1317036 R 467705 CDS YP_001450556.1 157149981 5599720 complement(1318151..1319932) 1 NC_009785.1 synthesizes RNA primers at the replication forks; DNA primase 1319932 dnaG 5599720 dnaG Streptococcus gordonii str. Challis substr. CH1 DNA primase YP_001450556.1 1318151 R 467705 CDS YP_001450557.1 157150489 5597749 1320138..1320518 1 NC_009785.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 1320518 mscL 5597749 mscL Streptococcus gordonii str. Challis substr. CH1 large conductance mechanosensitive channel protein YP_001450557.1 1320138 D 467705 CDS YP_001450558.1 157149903 5599133 complement(1320626..1320802) 1 NC_009785.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1320802 rpsU 5599133 rpsU Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S21 YP_001450558.1 1320626 R 467705 CDS YP_001450559.1 157151434 5598182 complement(1320929..1321612) 1 NC_009785.1 hypothetical protein 1321612 5598182 SGO_1277 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450559.1 1320929 R 467705 CDS YP_001450560.1 157150868 5598469 complement(1321623..1321973) 1 NC_009785.1 hypothetical protein 1321973 5598469 SGO_1278 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450560.1 1321623 R 467705 CDS YP_001450561.1 157151079 5598432 complement(1322055..1322354) 1 NC_009785.1 hypothetical protein 1322354 5598432 SGO_1279 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450561.1 1322055 R 467705 CDS YP_001450562.1 157150479 5597987 complement(1322563..1324008) 1 NC_009785.1 identified by match to protein family HMM PF03413; match to protein family HMM PF05569; putative membrane-associated Zn-dependent protease 1324008 5597987 SGO_1280 Streptococcus gordonii str. Challis substr. CH1 putative membrane-associated Zn-dependent protease YP_001450562.1 1322563 R 467705 CDS YP_001450563.1 157150165 5599150 complement(1324023..1324400) 1 NC_009785.1 identified by match to protein family HMM PF03965; penicillinase repressor 1324400 5599150 SGO_1281 Streptococcus gordonii str. Challis substr. CH1 penicillinase repressor YP_001450563.1 1324023 R 467705 CDS YP_001450564.1 157151291 5599355 complement(1324509..1324862) 1 NC_009785.1 identified by match to protein family HMM PF06993; integral membrane protein 1324862 5599355 SGO_1282 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450564.1 1324509 R 467705 CDS YP_001450565.1 157150812 5599155 1325055..1326371 1 NC_009785.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 1326371 5599155 SGO_1283 Streptococcus gordonii str. Challis substr. CH1 pyridine nucleotide-disulfide oxidoreductase YP_001450565.1 1325055 D 467705 CDS YP_001450566.1 157151294 5598538 1326484..1327452 1 NC_009785.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin-disulfide reductase 1327452 5598538 SGO_1284 Streptococcus gordonii str. Challis substr. CH1 thioredoxin-disulfide reductase YP_001450566.1 1326484 D 467705 CDS YP_001450567.1 157150908 5597859 1327835..1329361 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1329361 5597859 SGO_1285 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450567.1 1327835 D 467705 CDS YP_001450568.1 157151565 5598354 complement(1329642..1330370) 1 NC_009785.1 hypothetical protein 1330370 5598354 SGO_1286 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450568.1 1329642 R 467705 CDS YP_001450569.1 157151402 5599744 complement(1330704..1331339) 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator 1331339 5599744 SGO_1287 Streptococcus gordonii str. Challis substr. CH1 TetR/AcrR family transcriptional regulator YP_001450569.1 1330704 R 467705 CDS YP_001450570.1 157150125 5597889 1331531..1332934 1 NC_009785.1 identified by match to protein family HMM PF07690; multidrug resistance protein B 1332934 5597889 SGO_1288 Streptococcus gordonii str. Challis substr. CH1 multidrug resistance protein B YP_001450570.1 1331531 D 467705 CDS YP_001450571.1 157150582 5597787 1332921..1333508 1 NC_009785.1 hypothetical protein 1333508 5597787 SGO_1289 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450571.1 1332921 D 467705 CDS YP_001450572.1 157151045 5598951 complement(1333628..1335364) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein 1335364 5598951 SGO_1290 Streptococcus gordonii str. Challis substr. CH1 permease ATP-binding protein YP_001450572.1 1333628 R 467705 CDS YP_001450573.1 157151494 5598061 complement(1335354..1337096) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein SP1358 1337096 5598061 SGO_1291 Streptococcus gordonii str. Challis substr. CH1 permease ATP-binding protein SP1358 YP_001450573.1 1335354 R 467705 CDS YP_001450574.1 157151085 5598748 complement(1337193..1338380) 1 NC_009785.1 identified by match to protein family HMM PF07690; transport protein 1338380 5598748 SGO_1292 Streptococcus gordonii str. Challis substr. CH1 transport protein YP_001450574.1 1337193 R 467705 CDS YP_001450575.1 157151520 5597975 complement(1338537..1339934) 1 NC_009785.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1339934 asnC 5597975 asnC Streptococcus gordonii str. Challis substr. CH1 asparaginyl-tRNA synthetase YP_001450575.1 1338537 R 467705 CDS YP_001450576.1 157151225 5598643 complement(1340468..1340938) 1 NC_009785.1 putative lipoprotein 1340938 5598643 SGO_1295 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450576.1 1340468 R 467705 CDS YP_001450577.1 157150095 5598194 complement(1341171..1341632) 1 NC_009785.1 hypothetical protein 1341632 5598194 SGO_1296 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450577.1 1341171 R 467705 CDS YP_001450578.1 157150679 5597941 complement(1341636..1342814) 1 NC_009785.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1342814 aspC 5597941 aspC Streptococcus gordonii str. Challis substr. CH1 aspartate aminotransferase YP_001450578.1 1341636 R 467705 CDS YP_001450579.1 157151185 5598791 complement(1342811..1343299) 1 NC_009785.1 hypothetical protein 1343299 5598791 SGO_1298 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450579.1 1342811 R 467705 CDS YP_001450580.1 157151017 5597806 1343375..1343827 1 NC_009785.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1343827 5597806 SGO_1299 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001450580.1 1343375 D 467705 CDS YP_001450581.1 157151468 5598122 1343915..1344301 1 NC_009785.1 identified by match to protein family HMM PF03358; NADPH-dependent reductase 1344301 5598122 SGO_1300 Streptococcus gordonii str. Challis substr. CH1 NADPH-dependent reductase YP_001450581.1 1343915 D 467705 CDS YP_001450582.1 157150210 5599428 1344335..1344460 1 NC_009785.1 hypothetical protein 1344460 5599428 SGO_1301 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450582.1 1344335 D 467705 CDS YP_001450583.1 157150943 5599068 complement(1344603..1346069) 1 NC_009785.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322; beta-fructofuranosidase/sucrose 6 phosphate hydrolase 1346069 5599068 SGO_1302 Streptococcus gordonii str. Challis substr. CH1 beta-fructofuranosidase/sucrose 6 phosphate hydrolase YP_001450583.1 1344603 R 467705 CDS YP_001450584.1 157150163 5598291 complement(1346078..1346932) 1 NC_009785.1 identified by match to protein family HMM PF00528; transmembrane permease MsmG 1346932 5598291 SGO_1303 Streptococcus gordonii str. Challis substr. CH1 transmembrane permease MsmG YP_001450584.1 1346078 R 467705 CDS YP_001450585.1 157150577 5599455 complement(1346934..1347818) 1 NC_009785.1 identified by match to protein family HMM PF00528; transmembrane permease MsmF 1347818 5599455 SGO_1304 Streptococcus gordonii str. Challis substr. CH1 transmembrane permease MsmF YP_001450585.1 1346934 R 467705 CDS YP_001450586.1 157151479 5598958 complement(1347982..1349304) 1 NC_009785.1 identified by match to protein family HMM PF01547; substrate-binding protein MsmE 1349304 5598958 SGO_1305 Streptococcus gordonii str. Challis substr. CH1 substrate-binding protein MsmE YP_001450586.1 1347982 R 467705 CDS YP_001450587.1 157150104 5598728 complement(1349417..1350436) 1 NC_009785.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional repressor MsmR 1350436 5598728 SGO_1306 Streptococcus gordonii str. Challis substr. CH1 transcriptional repressor MsmR YP_001450587.1 1349417 R 467705 CDS YP_001450588.1 157151172 5598759 complement(1350525..1351259) 1 NC_009785.1 identified by match to protein family HMM PF03883; hypothetical protein 1351259 5598759 SGO_1307 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450588.1 1350525 R 467705 CDS YP_001450589.1 157151598 5597830 1351380..1351844 1 NC_009785.1 identified by match to protein family HMM PF08876; hypothetical protein 1351844 5597830 SGO_1308 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450589.1 1351380 D 467705 CDS YP_001450590.1 157151576 5599683 1351819..1352466 1 NC_009785.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III-like protein 1352466 hlyIII 5599683 hlyIII Streptococcus gordonii str. Challis substr. CH1 hemolysin III-like protein YP_001450590.1 1351819 D 467705 CDS YP_001450591.1 157150346 5598827 complement(1352620..1352829) 1 NC_009785.1 hypothetical protein 1352829 5598827 SGO_1310 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450591.1 1352620 R 467705 CDS YP_001450592.1 157151379 5599403 complement(1352915..1354009) 1 NC_009785.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 1354009 hemH 5599403 hemH Streptococcus gordonii str. Challis substr. CH1 ferrochelatase YP_001450592.1 1352915 R 467705 CDS YP_001450593.1 157150010 5599778 1354152..1355378 1 NC_009785.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1355378 pepT 5599778 pepT Streptococcus gordonii str. Challis substr. CH1 peptidase T YP_001450593.1 1354152 D 467705 CDS YP_001450594.1 157150674 5599535 complement(1355539..1358883) 1 NC_009785.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363; histidine triad A protein 1358883 5599535 SGO_1313 Streptococcus gordonii str. Challis substr. CH1 histidine triad A protein YP_001450594.1 1355539 R 467705 CDS YP_001450595.1 157150995 5598797 complement(1358892..1359824) 1 NC_009785.1 identified by match to protein family HMM PF01297; metal binding lipoprotein 1359824 5598797 SGO_1314 Streptococcus gordonii str. Challis substr. CH1 metal binding lipoprotein YP_001450595.1 1358892 R 467705 CDS YP_001450596.1 157149743 5598184 complement(1360140..1360871) 1 NC_009785.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1360871 trmD 5598184 trmD Streptococcus gordonii str. Challis substr. CH1 tRNA (guanine-N(1)-)-methyltransferase YP_001450596.1 1360140 R 467705 CDS YP_001450597.1 157151375 5599820 complement(1360861..1361379) 1 NC_009785.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1361379 rimM 5599820 rimM Streptococcus gordonii str. Challis substr. CH1 16S rRNA-processing protein RimM YP_001450597.1 1360861 R 467705 CDS YP_001450598.1 157150724 5598158 1361578..1362036 1 NC_009785.1 hypothetical protein 1362036 5598158 SGO_1317 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450598.1 1361578 D 467705 CDS YP_001450599.1 157150663 5598701 complement(1362290..1362844) 1 NC_009785.1 hypothetical protein 1362844 5598701 SGO_1318 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450599.1 1362290 R 467705 CDS YP_001450600.1 157150571 5598817 complement(1363011..1363676) 1 NC_009785.1 identified by match to protein family HMM PF02254; Trk family potassium uptake protein 1363676 5598817 SGO_1319 Streptococcus gordonii str. Challis substr. CH1 Trk family potassium uptake protein YP_001450600.1 1363011 R 467705 CDS YP_001450601.1 157150060 5598970 complement(1363687..1365036) 1 NC_009785.1 identified by match to protein family HMM PF02386; sodium transport family protein 1365036 ntpJ 5598970 ntpJ Streptococcus gordonii str. Challis substr. CH1 sodium transport family protein YP_001450601.1 1363687 R 467705 CDS YP_001450602.1 157151556 5599020 complement(1365033..1365584) 1 NC_009785.1 hypothetical protein 1365584 5599020 SGO_1321 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450602.1 1365033 R 467705 CDS YP_001450603.1 157150964 5599160 complement(1366017..1366256) 1 NC_009785.1 KH domain-containing protein 1366256 5599160 SGO_1322 Streptococcus gordonii str. Challis substr. CH1 KH domain-containing protein YP_001450603.1 1366017 R 467705 CDS YP_001450604.1 157151083 5598249 complement(1366275..1366547) 1 NC_009785.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1366547 rpsP 5598249 rpsP Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S16 YP_001450604.1 1366275 R 467705 CDS YP_001450605.1 157150879 5597981 complement(1366668..1367357) 1 NC_009785.1 hypothetical protein 1367357 5597981 SGO_1324 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450605.1 1366668 R 467705 CDS YP_001450606.1 157150322 5598413 complement(1367464..1368420) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 1368420 5598413 SGO_1325 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001450606.1 1367464 R 467705 CDS YP_001450607.1 157151067 5599437 complement(1368444..1369064) 1 NC_009785.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein 1369064 5599437 SGO_1326 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450607.1 1368444 R 467705 CDS YP_001450608.1 157151334 5598016 complement(1369057..1369827) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD family hydrolase 1369827 5598016 SGO_1327 Streptococcus gordonii str. Challis substr. CH1 HAD family hydrolase YP_001450608.1 1369057 R 467705 CDS YP_001450609.1 157149828 5598955 complement(1369839..1370579) 1 NC_009785.1 identified by match to protein family HMM PF01643; hypothetical protein 1370579 5598955 SGO_1328 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450609.1 1369839 R 467705 CDS YP_001450610.1 157150147 5598416 complement(1370583..1371713) 1 NC_009785.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1371713 5598416 SGO_1329 Streptococcus gordonii str. Challis substr. CH1 coproporphyrinogen III oxidase YP_001450610.1 1370583 R 467705 CDS YP_001450611.1 157150615 5599752 complement(1371850..1373595) 1 NC_009785.1 identified by match to protein family HMM PF00005; transporter 1373595 5599752 SGO_1330 Streptococcus gordonii str. Challis substr. CH1 transporter YP_001450611.1 1371850 R 467705 CDS YP_001450612.1 157150854 5598899 complement(1373588..1375354) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; HlyB/MsbA family ABC transporter 1375354 5598899 SGO_1331 Streptococcus gordonii str. Challis substr. CH1 HlyB/MsbA family ABC transporter YP_001450612.1 1373588 R 467705 CDS YP_001450613.1 157151258 5598453 complement(1375373..1375984) 1 NC_009785.1 identified by match to protein family HMM PF00440; putative transcriptional regulator 1375984 5598453 SGO_1332 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001450613.1 1375373 R 467705 CDS YP_001450614.1 157149919 5599713 complement(1376158..1376574) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1376574 gnaT 5599713 gnaT Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450614.1 1376158 R 467705 CDS YP_001450615.1 157150527 5599768 complement(1376611..1377891) 1 NC_009785.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine (thiol)-lyase 1377891 cysD 5599768 cysD Streptococcus gordonii str. Challis substr. CH1 O-acetylhomoserine (thiol)-lyase YP_001450615.1 1376611 R 467705 CDS YP_001450616.1 157150367 5599057 complement(1377990..1378385) 1 NC_009785.1 identified by match to protein family HMM PF00293; dATP pyrophosphohydrolase 1378385 ntpA 5599057 ntpA Streptococcus gordonii str. Challis substr. CH1 dATP pyrophosphohydrolase YP_001450616.1 1377990 R 467705 CDS YP_001450617.1 157151050 5599367 complement(1378385..1380673) 1 NC_009785.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 1380673 pcrA 5599367 pcrA Streptococcus gordonii str. Challis substr. CH1 ATP-dependent DNA helicase PcrA YP_001450617.1 1378385 R 467705 CDS YP_001450618.1 157151299 5598049 1380876..1382063 1 NC_009785.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1382063 5598049 SGO_1337 Streptococcus gordonii str. Challis substr. CH1 cation efflux family protein YP_001450618.1 1380876 D 467705 CDS YP_001450619.1 157150242 5598918 complement(1382165..1382722) 1 NC_009785.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Signal peptidase I 1382722 5598918 SGO_1338 Streptococcus gordonii str. Challis substr. CH1 Signal peptidase I YP_001450619.1 1382165 R 467705 CDS YP_001450620.1 157150834 5599549 complement(1382812..1384317) 1 NC_009785.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1384317 pyk 5599549 pyk Streptococcus gordonii str. Challis substr. CH1 pyruvate kinase YP_001450620.1 1382812 R 467705 CDS YP_001450621.1 157151349 5598502 complement(1384370..1385380) 1 NC_009785.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1385380 5598502 SGO_1340 Streptococcus gordonii str. Challis substr. CH1 6-phosphofructokinase YP_001450621.1 1384370 R 467705 CDS YP_001450622.1 157149864 5598572 complement(1385452..1388553) 1 NC_009785.1 Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 1388553 dnaE 5598572 dnaE Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III DnaE YP_001450622.1 1385452 R 467705 CDS YP_001450623.1 157150306 5599684 1388817..1389521 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1389521 5599684 SGO_1342 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450623.1 1388817 D 467705 CDS YP_001450624.1 157149697 5599461 1389533..1390333 1 NC_009785.1 ABC transporter ATP-binding protein SP1715; ABC transporter permease 1390333 5599461 SGO_1343 Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease YP_001450624.1 1389533 D 467705 CDS YP_001450625.1 157150238 5598098 1390453..1390824 1 NC_009785.1 hypothetical protein 1390824 5598098 SGO_1344 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450625.1 1390453 D 467705 CDS YP_001450626.1 157151638 5598879 1390809..1391042 1 NC_009785.1 hypothetical protein 1391042 5598879 SGO_1345 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450626.1 1390809 D 467705 CDS YP_001450627.1 157150130 5599806 complement(1391140..1391451) 1 NC_009785.1 hypothetical protein 1391451 5599806 SGO_1346 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450627.1 1391140 R 467705 CDS YP_001450628.1 157150530 5598100 complement(1391498..1392343) 1 NC_009785.1 membrane associated lipoprotein 1392343 5598100 SGO_1347 Streptococcus gordonii str. Challis substr. CH1 membrane associated lipoprotein YP_001450628.1 1391498 R 467705 CDS YP_001450629.1 157150870 5599051 complement(1392378..1392920) 1 NC_009785.1 identified by match to protein family HMM PF08020; putative cytoplasmic protein 1392920 5599051 SGO_1348 Streptococcus gordonii str. Challis substr. CH1 putative cytoplasmic protein YP_001450629.1 1392378 R 467705 CDS YP_001450630.1 157151442 5598430 complement(1392980..1393477) 1 NC_009785.1 hypothetical protein 1393477 5598430 SGO_1349 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450630.1 1392980 R 467705 CDS YP_001450631.1 157149681 5598645 1393304..1393411 1 NC_009785.1 hypothetical protein 1393411 5598645 SGO_1350 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450631.1 1393304 D 467705 CDS YP_001450632.1 157151637 5598294 complement(1393564..1395321) 1 NC_009785.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903; neopullulanase alpha amylase subunit 1395321 5598294 SGO_1351 Streptococcus gordonii str. Challis substr. CH1 neopullulanase alpha amylase subunit YP_001450632.1 1393564 R 467705 CDS YP_001450633.1 157151218 5599534 complement(1395626..1395769) 1 NC_009785.1 hypothetical protein 1395769 5599534 SGO_1352 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450633.1 1395626 R 467705 CDS YP_001450634.1 157150770 5597744 complement(1395932..1396405) 1 NC_009785.1 hypothetical protein 1396405 5597744 SGO_1353 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450634.1 1395932 R 467705 CDS YP_001450635.1 157150321 5598625 complement(1396503..1397081) 1 NC_009785.1 hypothetical protein 1397081 5598625 SGO_1354 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450635.1 1396503 R 467705 CDS YP_001450636.1 157149882 5599438 complement(1397321..1397935) 1 NC_009785.1 putative lipoprotein 1397935 5599438 SGO_1355 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450636.1 1397321 R 467705 CDS YP_001450637.1 157150980 5598889 complement(1398112..1398504) 1 NC_009785.1 hypothetical protein 1398504 5598889 SGO_1356 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450637.1 1398112 R 467705 CDS YP_001450638.1 157151066 5598224 complement(1398509..1398778) 1 NC_009785.1 hypothetical protein 1398778 5598224 SGO_1357 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450638.1 1398509 R 467705 CDS YP_001450639.1 157150614 5598022 complement(1399556..1401019) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP binding/permease 1401019 5598022 SGO_1358 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP binding/permease YP_001450639.1 1399556 R 467705 CDS YP_001450640.1 157149763 5598901 1401386..1402249 1 NC_009785.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; putative transcriptional regulator RggB 1402249 rggB 5598901 rggB Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator RggB YP_001450640.1 1401386 D 467705 CDS YP_001450641.1 157151266 5598961 complement(1402403..1403944) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter 1403944 5598961 SGO_1360 Streptococcus gordonii str. Challis substr. CH1 ABC transporter YP_001450641.1 1402403 R 467705 CDS YP_001450642.1 157151377 5598217 complement(1404060..1404914) 1 NC_009785.1 identified by match to protein family HMM PF03747; ADP-ribosylhydrolase 1404914 5598217 SGO_1361 Streptococcus gordonii str. Challis substr. CH1 ADP-ribosylhydrolase YP_001450642.1 1404060 R 467705 CDS YP_001450643.1 157150791 5598203 complement(1404955..1405572) 1 NC_009785.1 hypothetical protein 1405572 5598203 SGO_1362 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450643.1 1404955 R 467705 CDS YP_001450644.1 157151485 5598590 complement(1405817..1406623) 1 NC_009785.1 alpha/beta fold family hydrolase 1406623 5598590 SGO_1363 Streptococcus gordonii str. Challis substr. CH1 alpha/beta fold family hydrolase YP_001450644.1 1405817 R 467705 CDS YP_001450645.1 157150892 5598872 complement(1406864..1408234) 1 NC_009785.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 1408234 rumA-2 5598872 rumA-2 Streptococcus gordonii str. Challis substr. CH1 23S rRNA (uracil-5-)-methyltransferase RumA YP_001450645.1 1406864 R 467705 CDS YP_001450646.1 157150592 5598388 complement(1408320..1409651) 1 NC_009785.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcription regulator yrfE 1409651 5598388 SGO_1365 Streptococcus gordonii str. Challis substr. CH1 transcription regulator yrfE YP_001450646.1 1408320 R 467705 CDS YP_001450647.1 157150013 5598939 complement(1409666..1410493) 1 NC_009785.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 1410493 pheA 5598939 pheA Streptococcus gordonii str. Challis substr. CH1 prephenate dehydratase YP_001450647.1 1409666 R 467705 CDS YP_001450648.1 157151400 5599782 complement(1410484..1410969) 1 NC_009785.1 identified by match to protein family HMM PF01202; shikimate kinase 1410969 aroK 5599782 aroK Streptococcus gordonii str. Challis substr. CH1 shikimate kinase YP_001450648.1 1410484 R 467705 CDS YP_001450649.1 157150944 5599796 complement(1410962..1412245) 1 NC_009785.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1412245 aroA 5599796 aroA Streptococcus gordonii str. Challis substr. CH1 3-phosphoshikimate 1-carboxyvinyltransferase YP_001450649.1 1410962 R 467705 CDS YP_001450650.1 157150118 5598290 complement(1412383..1413297) 1 NC_009785.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; L-2-hydroxyisocaproate dehydrogenase 1413297 5598290 SGO_1369 Streptococcus gordonii str. Challis substr. CH1 L-2-hydroxyisocaproate dehydrogenase YP_001450650.1 1412383 R 467705 CDS YP_001450651.1 157149675 5599859 complement(1413413..1413751) 1 NC_009785.1 identified by match to protein family HMM PF06133; hypothetical protein 1413751 5599859 SGO_1370 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450651.1 1413413 R 467705 CDS YP_001450652.1 157151042 5598375 complement(1413769..1414875) 1 NC_009785.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1414875 5598375 SGO_1371 Streptococcus gordonii str. Challis substr. CH1 prephenate dehydrogenase YP_001450652.1 1413769 R 467705 CDS YP_001450653.1 157151018 5598067 complement(1414892..1416058) 1 NC_009785.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1416058 aroC 5598067 aroC Streptococcus gordonii str. Challis substr. CH1 chorismate synthase YP_001450653.1 1414892 R 467705 CDS YP_001450654.1 157150836 5598121 complement(1416147..1417214) 1 NC_009785.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1417214 aroB 5598121 aroB Streptococcus gordonii str. Challis substr. CH1 3-dehydroquinate synthase YP_001450654.1 1416147 R 467705 CDS YP_001450655.1 157150120 5598500 complement(1417293..1418150) 1 NC_009785.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1418150 aroE 5598500 aroE Streptococcus gordonii str. Challis substr. CH1 shikimate 5-dehydrogenase YP_001450655.1 1417293 R 467705 CDS YP_001450656.1 157151490 5599323 complement(1418140..1418817) 1 NC_009785.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1418817 aroD 5599323 aroD Streptococcus gordonii str. Challis substr. CH1 3-dehydroquinate dehydratase YP_001450656.1 1418140 R 467705 CDS YP_001450657.1 157151106 5599719 complement(1418814..1419977) 1 NC_009785.1 methyltransferase 1419977 5599719 SGO_1376 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001450657.1 1418814 R 467705 CDS YP_001450658.1 157150244 5597933 1420226..1422418 1 NC_009785.1 identified by match to protein family HMM PF00884; sulfatase 1422418 5597933 SGO_1377 Streptococcus gordonii str. Challis substr. CH1 sulfatase YP_001450658.1 1420226 D 467705 CDS YP_001450659.1 157151422 5599775 complement(1424302..1425339) 1 NC_009785.1 hypothetical protein 1425339 5599775 SGO_1378 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450659.1 1424302 R 467705 CDS YP_001450660.1 157150863 5598504 complement(1425342..1425665) 1 NC_009785.1 identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 1425665 cas2 5598504 cas2 Streptococcus gordonii str. Challis substr. CH1 CRISPR-associated Cas2 family protein YP_001450660.1 1425342 R 467705 CDS YP_001450661.1 157149930 5598439 complement(1425655..1426578) 1 NC_009785.1 identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 1426578 cas1 5598439 cas1 Streptococcus gordonii str. Challis substr. CH1 CRISPR-associated Cas1 family protein YP_001450661.1 1425655 R 467705 CDS YP_001450662.1 157150687 5599802 complement(1426750..1430160) 1 NC_009785.1 identified by match to protein family HMM TIGR01865; CRISPR-associated endonuclease Csn1 family protein 1430160 csn1 5599802 csn1 Streptococcus gordonii str. Challis substr. CH1 CRISPR-associated endonuclease Csn1 family protein YP_001450662.1 1426750 R 467705 CDS YP_001450663.1 157150380 5598526 complement(1430566..1430913) 1 NC_009785.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1430913 rplS 5598526 rplS Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L19 YP_001450663.1 1430566 R 467705 CDS YP_001450664.1 157150545 5599345 complement(1431029..1431355) 1 NC_009785.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1431355 5599345 SGO_1384 Streptococcus gordonii str. Challis substr. CH1 camphor resistance protein CrcB YP_001450664.1 1431029 R 467705 CDS YP_001450665.1 157149877 5599025 complement(1431352..1431726) 1 NC_009785.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1431726 5599025 SGO_1385 Streptococcus gordonii str. Challis substr. CH1 camphor resistance protein CrcB YP_001450665.1 1431352 R 467705 CDS YP_001450666.1 157151268 5598883 complement(1431723..1431989) 1 NC_009785.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; hypothetical protein 1431989 5598883 SGO_1386 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450666.1 1431723 R 467705 CDS YP_001450667.1 157150820 5599772 complement(1432473..1433855) 1 NC_009785.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 1433855 sufB-2 5599772 sufB-2 Streptococcus gordonii str. Challis substr. CH1 FeS assembly protein SufB YP_001450667.1 1432473 R 467705 CDS YP_001450668.1 157151139 5598527 complement(1434045..1436342) 1 NC_009785.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase 1436342 pulA-1 5598527 pulA-1 Streptococcus gordonii str. Challis substr. CH1 pullulanase YP_001450668.1 1434045 R 467705 CDS YP_001450669.1 157150657 5597879 complement(1436361..1437317) 1 NC_009785.1 similar to YegS from E. coli; putative lipid kinase 1437317 5597879 SGO_1389 Streptococcus gordonii str. Challis substr. CH1 putative lipid kinase YP_001450669.1 1436361 R 467705 CDS YP_001450670.1 157150014 5598830 complement(1437327..1439285) 1 NC_009785.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1439285 ligA 5598830 ligA Streptococcus gordonii str. Challis substr. CH1 NAD-dependent DNA ligase LigA YP_001450670.1 1437327 R 467705 CDS YP_001450671.1 157151370 5599520 complement(1439432..1439941) 1 NC_009785.1 identified by match to protein family HMM PF06177; hypothetical protein 1439941 5599520 SGO_1391 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450671.1 1439432 R 467705 CDS YP_001450672.1 157150987 5599565 1440102..1440539 1 NC_009785.1 identified by match to protein family HMM PF04138; mesH protein 1440539 5599565 SGO_1392 Streptococcus gordonii str. Challis substr. CH1 mesH protein YP_001450672.1 1440102 D 467705 CDS YP_001450673.1 157149917 5598200 1440571..1440993 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1440993 5598200 SGO_1393 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450673.1 1440571 D 467705 CDS YP_001450674.1 157150660 5599682 complement(1441093..1441800) 1 NC_009785.1 identified by match to protein family HMM PF03483; hypothetical protein 1441800 5599682 SGO_1394 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450674.1 1441093 R 467705 CDS YP_001450675.1 157151095 5598824 complement(1441818..1442267) 1 NC_009785.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1442267 5598824 SGO_1395 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001450675.1 1441818 R 467705 CDS YP_001450676.1 157151368 5597955 complement(1442482..1443375) 1 NC_009785.1 identified by match to protein family HMM PF03631; ribonuclease BN family protein 1443375 5597955 SGO_1396 Streptococcus gordonii str. Challis substr. CH1 ribonuclease BN family protein YP_001450676.1 1442482 R 467705 CDS YP_001450677.1 157149745 5597869 complement(1443524..1444381) 1 NC_009785.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 1444381 map 5597869 map Streptococcus gordonii str. Challis substr. CH1 methionine aminopeptidase YP_001450677.1 1443524 R 467705 CDS YP_001450678.1 157149931 5599822 complement(1444403..1445680) 1 NC_009785.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085; hypothetical protein 1445680 5599822 SGO_1398 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450678.1 1444403 R 467705 CDS YP_001450679.1 157150922 5599502 complement(1445673..1446224) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1446224 5599502 SGO_1399 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450679.1 1445673 R 467705 CDS YP_001450680.1 157151105 5598327 complement(1446272..1447534) 1 NC_009785.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1447534 murA-2 5598327 murA-2 Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001450680.1 1446272 R 467705 CDS YP_001450681.1 157150565 5597934 complement(1447747..1448496) 1 NC_009785.1 identified by match to protein family HMM PF02811; hypothetical protein 1448496 5597934 SGO_1401 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450681.1 1447747 R 467705 CDS YP_001450682.1 157151129 5598988 complement(1448530..1448844) 1 NC_009785.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 1448844 hisE 5598988 hisE Streptococcus gordonii str. Challis substr. CH1 phosphoribosyl-ATP pyrophosphatase YP_001450682.1 1448530 R 467705 CDS YP_001450683.1 157149682 5597901 complement(1448962..1449306) 1 NC_009785.1 identified by match to protein family HMM PF01502; phosphoribosyl-AMP cyclohydrolase 1449306 hisIE 5597901 hisIE Streptococcus gordonii str. Challis substr. CH1 phosphoribosyl-AMP cyclohydrolase YP_001450683.1 1448962 R 467705 CDS YP_001450684.1 157151110 5598268 complement(1449306..1450064) 1 NC_009785.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1450064 hisF 5598268 hisF Streptococcus gordonii str. Challis substr. CH1 imidazole glycerol phosphate synthase subunit HisF YP_001450684.1 1449306 R 467705 CDS YP_001450685.1 157150846 5597928 complement(1450067..1450789) 1 NC_009785.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1450789 hisA 5597928 hisA Streptococcus gordonii str. Challis substr. CH1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001450685.1 1450067 R 467705 CDS YP_001450686.1 157151251 5598473 complement(1450767..1451390) 1 NC_009785.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1451390 hisH 5598473 hisH Streptococcus gordonii str. Challis substr. CH1 imidazole glycerol phosphate synthase subunit HisH YP_001450686.1 1450767 R 467705 CDS YP_001450687.1 157150520 5599353 complement(1451425..1452009) 1 NC_009785.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1452009 hisB 5599353 hisB Streptococcus gordonii str. Challis substr. CH1 imidazoleglycerol-phosphate dehydratase YP_001450687.1 1451425 R 467705 CDS YP_001450688.1 157150831 5599071 complement(1452021..1453313) 1 NC_009785.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1453313 hisD 5599071 hisD Streptococcus gordonii str. Challis substr. CH1 histidinol dehydrogenase YP_001450688.1 1452021 R 467705 CDS YP_001450689.1 157151668 5598510 complement(1453310..1453954) 1 NC_009785.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1453954 hisG 5598510 hisG Streptococcus gordonii str. Challis substr. CH1 ATP phosphoribosyltransferase catalytic subunit YP_001450689.1 1453310 R 467705 CDS YP_001450690.1 157150056 5598736 complement(1453951..1454940) 1 NC_009785.1 identified by match to protein family HMM PF00587; tRNA synthetase class II core domain-containing protein 1454940 5598736 SGO_1410 Streptococcus gordonii str. Challis substr. CH1 tRNA synthetase class II core domain-containing protein YP_001450690.1 1453951 R 467705 CDS YP_001450691.1 157149714 5599083 complement(1454996..1456054) 1 NC_009785.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1456054 hisC 5599083 hisC Streptococcus gordonii str. Challis substr. CH1 histidinol-phosphate aminotransferase YP_001450691.1 1454996 R 467705 CDS YP_001450692.1 157150194 5599510 complement(1456527..1456832) 1 NC_009785.1 hypothetical protein 1456832 5599510 SGO_1412 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450692.1 1456527 R 467705 CDS YP_001450693.1 157149814 5598196 complement(1456866..1460516) 1 NC_009785.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; first chain of major exonuclease RexA 1460516 5598196 SGO_1413 Streptococcus gordonii str. Challis substr. CH1 first chain of major exonuclease RexA YP_001450693.1 1456866 R 467705 CDS YP_001450694.1 157150420 5598829 complement(1460513..1463794) 1 NC_009785.1 identified by match to protein family HMM TIGR02774; putative exonuclease RexB 1463794 rexB 5598829 rexB Streptococcus gordonii str. Challis substr. CH1 putative exonuclease RexB YP_001450694.1 1460513 R 467705 CDS YP_001450695.1 157150970 5599255 complement(1464176..1467349) 1 NC_009785.1 identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM TIGR01167; LPXTG cell wall surface protein, X-prolyl dipeptidylaminopeptidase 1467349 5599255 SGO_1415 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein, X-prolyl dipeptidylaminopeptidase YP_001450695.1 1464176 R 467705 CDS YP_001450696.1 157150002 5598241 complement(1467988..1469349) 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; putative histidine kinase 1469349 5598241 SGO_1416 Streptococcus gordonii str. Challis substr. CH1 putative histidine kinase YP_001450696.1 1467988 R 467705 CDS YP_001450697.1 157150522 5599209 complement(1469346..1470002) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator protein 1470002 5599209 SGO_1417 Streptococcus gordonii str. Challis substr. CH1 response regulator protein YP_001450697.1 1469346 R 467705 CDS YP_001450698.1 157151112 5599067 complement(1470021..1471238) 1 NC_009785.1 identified by match to protein family HMM PF02687; ATP-binding cassette transporter-like protein 1471238 5599067 SGO_1418 Streptococcus gordonii str. Challis substr. CH1 ATP-binding cassette transporter-like protein YP_001450698.1 1470021 R 467705 CDS YP_001450699.1 157151207 5597926 complement(1471246..1471926) 1 NC_009785.1 identified by match to protein family HMM PF00005; ATP-binding cassette protein 1471926 5597926 SGO_1419 Streptococcus gordonii str. Challis substr. CH1 ATP-binding cassette protein YP_001450699.1 1471246 R 467705 CDS YP_001450700.1 157150477 5597764 complement(1471913..1473166) 1 NC_009785.1 ATP-binding cassette transporter-like protein 1473166 5597764 SGO_1420 Streptococcus gordonii str. Challis substr. CH1 ATP-binding cassette transporter-like protein YP_001450700.1 1471913 R 467705 CDS YP_001450701.1 157149998 5599153 complement(1473197..1473460) 1 NC_009785.1 ATP-binding cassette lipoprotein 1473460 5599153 SGO_1421 Streptococcus gordonii str. Challis substr. CH1 ATP-binding cassette lipoprotein YP_001450701.1 1473197 R 467705 CDS YP_001450702.1 157150361 5599309 1473735..1474745 1 NC_009785.1 hypothetical protein 1474745 5599309 SGO_1422 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450702.1 1473735 D 467705 CDS YP_001450703.1 157149662 5599378 1474818..1475003 1 NC_009785.1 hypothetical protein 1475003 5599378 SGO_1423 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450703.1 1474818 D 467705 CDS YP_001450704.1 157151658 5598562 complement(1475124..1475528) 1 NC_009785.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; phenylacetic acid degradation protein paaI 1475528 paaI 5598562 paaI Streptococcus gordonii str. Challis substr. CH1 phenylacetic acid degradation protein paaI YP_001450704.1 1475124 R 467705 CDS YP_001450705.1 157151131 5597753 complement(1475628..1476218) 1 NC_009785.1 hypothetical protein 1476218 5597753 SGO_1425 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450705.1 1475628 R 467705 CDS YP_001450706.1 157151177 5597897 complement(1476299..1477603) 1 NC_009785.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1477603 eno 5597897 eno Streptococcus gordonii str. Challis substr. CH1 phosphopyruvate hydratase YP_001450706.1 1476299 R 467705 CDS YP_001450707.1 157150556 5597817 1477758..1478258 1 NC_009785.1 identified by match to protein family HMM PF07997; hypothetical protein 1478258 5597817 SGO_1427 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450707.1 1477758 D 467705 CDS YP_001450708.1 157149967 5599006 1478260..1478598 1 NC_009785.1 hypothetical protein 1478598 5599006 SGO_1428 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450708.1 1478260 D 467705 CDS YP_001450709.1 157151013 5598716 complement(1478595..1479713) 1 NC_009785.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1479713 5598716 SGO_1429 Streptococcus gordonii str. Challis substr. CH1 glycerate kinase YP_001450709.1 1478595 R 467705 CDS YP_001450710.1 157150822 5598134 complement(1479723..1480370) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 1480370 serB 5598134 serB Streptococcus gordonii str. Challis substr. CH1 phosphoserine phosphatase SerB YP_001450710.1 1479723 R 467705 CDS YP_001450711.1 157150079 5598524 complement(1480664..1482388) 1 NC_009785.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1482388 ezrA 5598524 ezrA Streptococcus gordonii str. Challis substr. CH1 septation ring formation regulator EzrA YP_001450711.1 1480664 R 467705 CDS YP_001450712.1 157151219 5599858 complement(1482474..1484423) 1 NC_009785.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1484423 gyrB 5599858 gyrB Streptococcus gordonii str. Challis substr. CH1 DNA gyrase subunit B YP_001450712.1 1482474 R 467705 CDS YP_001450713.1 157150817 5597742 complement(1484425..1485003) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 1485003 5597742 SGO_1433 Streptococcus gordonii str. Challis substr. CH1 phosphoglycolate phosphatase YP_001450713.1 1484425 R 467705 CDS YP_001450714.1 157150538 5598531 complement(1485156..1485704) 1 NC_009785.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein 1485704 thiJ 5598531 thiJ Streptococcus gordonii str. Challis substr. CH1 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein YP_001450714.1 1485156 R 467705 CDS YP_001450715.1 157149855 5599037 complement(1485718..1486950) 1 NC_009785.1 identified by match to protein family HMM PF01098; cell shape determining protein 1486950 mreB 5599037 mreB Streptococcus gordonii str. Challis substr. CH1 cell shape determining protein YP_001450715.1 1485718 R 467705 CDS YP_001450716.1 157150068 5599395 complement(1486963..1487940) 1 NC_009785.1 identified by match to protein family HMM PF03601; membrane protein 1487940 5599395 SGO_1436 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001450716.1 1486963 R 467705 CDS YP_001450717.1 157151695 5598579 complement(1488053..1490527) 1 NC_009785.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DnaQ family exonuclease/DinG family helicase 1490527 5598579 SGO_1437 Streptococcus gordonii str. Challis substr. CH1 DnaQ family exonuclease/DinG family helicase YP_001450717.1 1488053 R 467705 CDS YP_001450718.1 157151449 5598808 1490712..1491347 1 NC_009785.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 4 1491347 5598808 SGO_1438 Streptococcus gordonii str. Challis substr. CH1 metallo-beta-lactamase superfamily protein 4 YP_001450718.1 1490712 D 467705 CDS YP_001450719.1 157150897 5598357 complement(1491389..1492315) 1 NC_009785.1 identified by match to protein family HMM PF02687; cell division protein FtsX 1492315 ftsX 5598357 ftsX Streptococcus gordonii str. Challis substr. CH1 cell division protein FtsX YP_001450719.1 1491389 R 467705 CDS YP_001450720.1 157150166 5598380 complement(1492308..1493000) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell-division ATP-binding protein FtsE 1493000 5598380 SGO_1440 Streptococcus gordonii str. Challis substr. CH1 cell-division ATP-binding protein FtsE YP_001450720.1 1492308 R 467705 CDS YP_001450721.1 157149715 5599342 complement(join(1493023..1494045,1494047..1494118)) 1 NC_009785.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1494118 prfB 5599342 prfB Streptococcus gordonii str. Challis substr. CH1 peptide chain release factor 2 YP_001450721.1 1493023 R 467705 CDS YP_001450722.1 157150972 5598487 1494413..1495276 1 NC_009785.1 identified by match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 1495276 5598487 SGO_1442 Streptococcus gordonii str. Challis substr. CH1 serine/threonine protein phosphatase family protein YP_001450722.1 1494413 D 467705 CDS YP_001450723.1 157151640 5598239 complement(1495357..1496052) 1 NC_009785.1 identified by match to protein family HMM TIGR02206; hypothetical protein 1496052 5598239 SGO_1443 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450723.1 1495357 R 467705 CDS YP_001450724.1 157149799 5599575 complement(1496054..1496758) 1 NC_009785.1 identified by match to protein family HMM TIGR02206; hypothetical protein 1496758 5599575 SGO_1444 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450724.1 1496054 R 467705 CDS YP_001450725.1 157150761 5599358 complement(1497210..1498580) 1 NC_009785.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1498580 murF 5599358 murF Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001450725.1 1497210 R 467705 CDS YP_001450726.1 157149874 5598634 complement(1498656..1499702) 1 NC_009785.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1499702 ddl 5598634 ddl Streptococcus gordonii str. Challis substr. CH1 D-alanyl-alanine synthetase A YP_001450726.1 1498656 R 467705 CDS YP_001450727.1 157151011 5598694 complement(1499832..1500428) 1 NC_009785.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1500428 recR 5598694 recR Streptococcus gordonii str. Challis substr. CH1 recombination protein RecR YP_001450727.1 1499832 R 467705 CDS YP_001450728.1 157151482 5598136 complement(1500439..1502493) 1 NC_009785.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2B 1502493 pbp2b 5598136 pbp2b Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 2B YP_001450728.1 1500439 R 467705 CDS YP_001450729.1 157149846 5598807 complement(1502670..1503524) 1 NC_009785.1 hypothetical protein 1503524 5598807 SGO_1450 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450729.1 1502670 R 467705 CDS YP_001450730.1 157150295 5599823 complement(1503624..1504181) 1 NC_009785.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1504181 frr 5599823 frr Streptococcus gordonii str. Challis substr. CH1 ribosome recycling factor YP_001450730.1 1503624 R 467705 CDS YP_001450731.1 157151674 5599477 complement(1504203..1504928) 1 NC_009785.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1504928 pyrH 5599477 pyrH Streptococcus gordonii str. Challis substr. CH1 uridylate kinase YP_001450731.1 1504203 R 467705 CDS YP_001450732.1 157151437 5598246 complement(1505119..1506426) 1 NC_009785.1 identified by match to protein family HMM PF01501; glycosyl transferase family protein 1506426 5598246 SGO_1453 Streptococcus gordonii str. Challis substr. CH1 glycosyl transferase family protein YP_001450732.1 1505119 R 467705 CDS YP_001450733.1 157151568 5599670 complement(1506593..1508059) 1 NC_009785.1 identified by match to protein family HMM PF00324; amino acid permease family protein 1508059 5599670 SGO_1454 Streptococcus gordonii str. Challis substr. CH1 amino acid permease family protein YP_001450733.1 1506593 R 467705 CDS YP_001450734.1 157150680 5598975 complement(1508298..1508987) 1 NC_009785.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1508987 rplA 5598975 rplA Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L1 YP_001450734.1 1508298 R 467705 CDS YP_001450735.1 157149822 5598788 complement(1509085..1509510) 1 NC_009785.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1509510 rplK 5598788 rplK Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L11 YP_001450735.1 1509085 R 467705 CDS YP_001450736.1 157150971 5598532 1509678..1510028 1 NC_009785.1 hypothetical protein 1510028 5598532 SGO_1457 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450736.1 1509678 D 467705 CDS YP_001450737.1 157150720 5598240 complement(1510057..1512399) 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase yfgQ 1512399 aha1 5598240 aha1 Streptococcus gordonii str. Challis substr. CH1 cation-transporting ATPase yfgQ YP_001450737.1 1510057 R 467705 CDS YP_001450738.1 157149777 5598708 complement(1512518..1512904) 1 NC_009785.1 identified by match to protein family HMM PF00903; glyoxylase 1512904 5598708 SGO_1459 Streptococcus gordonii str. Challis substr. CH1 glyoxylase YP_001450738.1 1512518 R 467705 CDS YP_001450739.1 157151620 5599728 complement(1513016..1515316) 1 NC_009785.1 identified by match to protein family HMM PF01580; DNA translocase ftsK 1515316 5599728 SGO_1460 Streptococcus gordonii str. Challis substr. CH1 DNA translocase ftsK YP_001450739.1 1513016 R 467705 CDS YP_001450740.1 157151115 5598053 complement(1515460..1515657) 1 NC_009785.1 identified by match to protein family HMM PF04024; putative stress-responsive transcriptional regulator PspC 1515657 5598053 SGO_1461 Streptococcus gordonii str. Challis substr. CH1 putative stress-responsive transcriptional regulator PspC YP_001450740.1 1515460 R 467705 CDS YP_001450741.1 157150540 5597920 1515991..1516407 1 NC_009785.1 identified by match to protein family HMM PF00293; NUDIX domain-containing protein 1516407 5597920 SGO_1462 Streptococcus gordonii str. Challis substr. CH1 NUDIX domain-containing protein YP_001450741.1 1515991 D 467705 CDS YP_001450742.1 157149932 5599031 1516454..1517257 1 NC_009785.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 1517257 5599031 SGO_1463 Streptococcus gordonii str. Challis substr. CH1 peptidyl-prolyl cis-trans isomerase YP_001450742.1 1516454 D 467705 CDS YP_001450743.1 157150492 5599516 1517292..1517528 1 NC_009785.1 hypothetical protein 1517528 5599516 SGO_1464 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450743.1 1517292 D 467705 CDS YP_001450744.1 157150377 5599127 complement(1517614..1519155) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1519155 5599127 SGO_1465 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450744.1 1517614 R 467705 CDS YP_001450745.1 157149785 5599349 complement(1519253..1519945) 1 NC_009785.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1519945 5599349 SGO_1466 Streptococcus gordonii str. Challis substr. CH1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_001450745.1 1519253 R 467705 CDS YP_001450746.1 157151574 5599159 complement(1519997..1520305) 1 NC_009785.1 hypothetical protein 1520305 5599159 SGO_1467 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450746.1 1519997 R 467705 CDS YP_001450747.1 157150932 5598811 complement(1520317..1520868) 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1520868 5598811 SGO_1468 Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001450747.1 1520317 R 467705 CDS YP_001450748.1 157150585 5598311 complement(1520877..1522256) 1 NC_009785.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1522256 glmU 5598311 glmU Streptococcus gordonii str. Challis substr. CH1 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001450748.1 1520877 R 467705 CDS YP_001450749.1 157151028 5598947 complement(1522343..1522792) 1 NC_009785.1 identified by match to protein family HMM PF06171; hypothetical protein 1522792 5598947 SGO_1470 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450749.1 1522343 R 467705 CDS YP_001450750.1 157151685 5598088 complement(1522843..1523190) 1 NC_009785.1 hypothetical protein 1523190 5598088 SGO_1471 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450750.1 1522843 R 467705 CDS YP_001450751.1 157150154 5598991 complement(1523187..1523930) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1523930 5598991 SGO_1472 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450751.1 1523187 R 467705 CDS YP_001450752.1 157150307 5599672 complement(1523951..1524649) 1 NC_009785.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1524649 fabG 5599672 fabG Streptococcus gordonii str. Challis substr. CH1 3-ketoacyl-ACP reductase YP_001450752.1 1523951 R 467705 CDS YP_001450753.1 157151196 5599460 complement(1524642..1524878) 1 NC_009785.1 hypothetical protein 1524878 5599460 SGO_1474 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450753.1 1524642 R 467705 CDS YP_001450754.1 157150529 5597784 complement(1525013..1525978) 1 NC_009785.1 putative lipoprotein 1525978 5597784 SGO_1475 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450754.1 1525013 R 467705 CDS YP_001450755.1 157149941 5599054 complement(1526489..1527187) 1 NC_009785.1 hypothetical protein 1527187 5599054 SGO_1476 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450755.1 1526489 R 467705 CDS YP_001450756.1 157149690 5599763 complement(1527460..1528113) 1 NC_009785.1 hypothetical protein 1528113 5599763 SGO_1477 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450756.1 1527460 R 467705 CDS YP_001450757.1 157151440 5598179 complement(1528308..1529006) 1 NC_009785.1 hypothetical protein 1529006 5598179 SGO_1478 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450757.1 1528308 R 467705 CDS YP_001450758.1 157151103 5599710 complement(1529113..1529772) 1 NC_009785.1 hypothetical protein 1529772 5599710 SGO_1479 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450758.1 1529113 R 467705 CDS YP_001450759.1 157149909 5597940 complement(1529856..1530311) 1 NC_009785.1 ribosomal-protein-alanine acetyltransferase 1530311 5597940 SGO_1480 Streptococcus gordonii str. Challis substr. CH1 ribosomal-protein-alanine acetyltransferase YP_001450759.1 1529856 R 467705 CDS YP_001450760.1 157151655 5599803 complement(1530330..1530755) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1530755 5599803 SGO_1481 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001450760.1 1530330 R 467705 CDS YP_001450761.1 157151452 5599237 complement(1530955..1532352) 1 NC_009785.1 identified by match to protein family HMM PF00324; amino acid permease 1532352 5599237 SGO_1482 Streptococcus gordonii str. Challis substr. CH1 amino acid permease YP_001450761.1 1530955 R 467705 CDS YP_001450762.1 157149957 5597924 complement(1532473..1534461) 1 NC_009785.1 putative protein SP0913; identified by match to protein family HMM PF02687; putative permease 1534461 5597924 SGO_1483 Streptococcus gordonii str. Challis substr. CH1 putative permease YP_001450762.1 1532473 R 467705 CDS YP_001450763.1 157151346 5599141 complement(1534454..1535221) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1535221 5599141 SGO_1484 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450763.1 1534454 R 467705 CDS YP_001450764.1 157150110 5599556 complement(1535537..1535668) 1 NC_009785.1 hypothetical protein 1535668 5599556 SGO_1485 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450764.1 1535537 R 467705 CDS YP_001450765.1 157150569 5599525 complement(1535957..1543009) 1 NC_009785.1 identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; beta-galactosidase 1543009 5599525 SGO_1486 Streptococcus gordonii str. Challis substr. CH1 beta-galactosidase YP_001450765.1 1535957 R 467705 CDS YP_001450766.1 157151048 5598979 complement(1543282..1548594) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 1548594 5598979 SGO_1487 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450766.1 1543282 R 467705 CDS YP_001450767.1 157151052 5598058 complement(1548924..1549664) 1 NC_009785.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 1549664 5598058 SGO_1488 Streptococcus gordonii str. Challis substr. CH1 putative methyltransferase YP_001450767.1 1548924 R 467705 CDS YP_001450768.1 157151487 5598047 complement(1549773..1550036) 1 NC_009785.1 putative lipoprotein 1550036 5598047 SGO_1489 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001450768.1 1549773 R 467705 CDS YP_001450769.1 157150422 5599655 complement(1550070..1550417) 1 NC_009785.1 identified by match to protein family HMM PF07972; NrdI protein 1550417 5599655 SGO_1490 Streptococcus gordonii str. Challis substr. CH1 NrdI protein YP_001450769.1 1550070 R 467705 CDS YP_001450770.1 157150775 5599251 complement(1550427..1550750) 1 NC_009785.1 hypothetical protein 1550750 5599251 SGO_1491 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450770.1 1550427 R 467705 CDS YP_001450771.1 157150123 5598616 complement(1550973..1551539) 1 NC_009785.1 identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator 1551539 5598616 SGO_1492 Streptococcus gordonii str. Challis substr. CH1 TetR/AcrR family transcriptional regulator YP_001450771.1 1550973 R 467705 CDS YP_001450772.1 157151632 5598345 1551688..1552638 1 NC_009785.1 hypothetical protein 1552638 5598345 SGO_1493 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450772.1 1551688 D 467705 CDS YP_001450773.1 157149953 5597923 complement(1552756..1553172) 1 NC_009785.1 hypothetical protein 1553172 5597923 SGO_1494 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450773.1 1552756 R 467705 CDS YP_001450774.1 157150553 5599692 complement(1553183..1553584) 1 NC_009785.1 identified by match to protein family HMM PF04397; putative transcriptional regulator 1553584 5599692 SGO_1495 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001450774.1 1553183 R 467705 CDS YP_001450775.1 157150551 5599013 complement(1553661..1554506) 1 NC_009785.1 identified by match to protein family HMM PF01061; putative integral membrane transport protein 1554506 5599013 SGO_1496 Streptococcus gordonii str. Challis substr. CH1 putative integral membrane transport protein YP_001450775.1 1553661 R 467705 CDS YP_001450776.1 157151387 5599015 complement(1554508..1555374) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATPase 1555374 5599015 SGO_1497 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATPase YP_001450776.1 1554508 R 467705 CDS YP_001450777.1 157149842 5598112 complement(1555525..1557516) 1 NC_009785.1 putative protein SP0913; putative permease 1557516 5598112 SGO_1498 Streptococcus gordonii str. Challis substr. CH1 putative permease YP_001450777.1 1555525 R 467705 CDS YP_001450778.1 157150180 5599597 complement(1557497..1558276) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1558276 5599597 SGO_1499 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450778.1 1557497 R 467705 CDS YP_001450779.1 157150291 5598860 complement(1558287..1558415) 1 NC_009785.1 hypothetical protein 1558415 5598860 SGO_1500 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450779.1 1558287 R 467705 CDS YP_001450780.1 157150744 5599482 complement(1558531..1559289) 1 NC_009785.1 hypothetical protein 1559289 5599482 SGO_1501 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450780.1 1558531 R 467705 CDS YP_001450781.1 157151676 5598668 complement(1559487..1560131) 1 NC_009785.1 hypothetical protein 1560131 5598668 SGO_1502 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450781.1 1559487 R 467705 CDS YP_001450782.1 157151161 5599624 complement(1560156..1560713) 1 NC_009785.1 hypothetical protein 1560713 5599624 SGO_1503 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450782.1 1560156 R 467705 CDS YP_001450783.1 157149950 5597847 complement(1560759..1561739) 1 NC_009785.1 identified by match to protein family HMM PF02518; histidine kinase 1561739 5597847 SGO_1504 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001450783.1 1560759 R 467705 CDS YP_001450784.1 157150931 5597899 complement(1561723..1562409) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator Rr1 1562409 5597899 SGO_1505 Streptococcus gordonii str. Challis substr. CH1 response regulator Rr1 YP_001450784.1 1561723 R 467705 CDS YP_001450785.1 157151114 5598313 1562619..1563878 1 NC_009785.1 hypothetical protein 1563878 5598313 SGO_1506 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450785.1 1562619 D 467705 CDS YP_001450786.1 157151557 5597922 1564002..1565186 1 NC_009785.1 hypothetical protein 1565186 5597922 SGO_1507 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450786.1 1564002 D 467705 CDS YP_001450787.1 157149770 5598511 complement(1565212..1565331) 1 NC_009785.1 hypothetical protein 1565331 5598511 SGO_1508 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450787.1 1565212 R 467705 CDS YP_001450788.1 157150643 5598477 1565489..1566685 1 NC_009785.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794; match to protein family HMM PF08022; oxidoreductase NAD-binding subunit 1566685 5598477 SGO_1509 Streptococcus gordonii str. Challis substr. CH1 oxidoreductase NAD-binding subunit YP_001450788.1 1565489 D 467705 CDS YP_001450789.1 157150845 5598848 complement(1567112..1568014) 1 NC_009785.1 identified by match to protein family HMM PF01263; aldolase 1 epimerase LacX 1568014 5598848 SGO_1510 Streptococcus gordonii str. Challis substr. CH1 aldolase 1 epimerase LacX YP_001450789.1 1567112 R 467705 CDS YP_001450790.1 157151364 5598474 complement(1568034..1568315) 1 NC_009785.1 hypothetical protein 1568315 5598474 SGO_1511 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450790.1 1568034 R 467705 CDS YP_001450791.1 157150880 5598019 complement(1568369..1569775) 1 NC_009785.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase 1569775 lacG 5598019 lacG Streptococcus gordonii str. Challis substr. CH1 6-phospho-beta-galactosidase YP_001450791.1 1568369 R 467705 CDS YP_001450792.1 157151244 5598406 complement(1569870..1571576) 1 NC_009785.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system lactose-specific transporter subunit IIBC 1571576 lacE 5598406 lacE Streptococcus gordonii str. Challis substr. CH1 PTS system lactose-specific transporter subunit IIBC YP_001450792.1 1569870 R 467705 CDS YP_001450793.1 157150563 5599588 complement(1571576..1571893) 1 NC_009785.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system lactose-specific transporter subunit IIA 1571893 lacF 5599588 lacF Streptococcus gordonii str. Challis substr. CH1 PTS system lactose-specific transporter subunit IIA YP_001450793.1 1571576 R 467705 CDS YP_001450794.1 157151123 5598990 complement(1571940..1572773) 1 NC_009785.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; antiterminator protein 1572773 5598990 SGO_1515 Streptococcus gordonii str. Challis substr. CH1 antiterminator protein YP_001450794.1 1571940 R 467705 CDS YP_001450795.1 157151000 5597911 complement(1572970..1573950) 1 NC_009785.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 1573950 lacD-2 5597911 lacD-2 Streptococcus gordonii str. Challis substr. CH1 tagatose 1,6-diphosphate aldolase YP_001450795.1 1572970 R 467705 CDS YP_001450796.1 157151561 5598168 complement(1573954..1574883) 1 NC_009785.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase 1574883 lacC 5598168 lacC Streptococcus gordonii str. Challis substr. CH1 tagatose-6-phosphate kinase YP_001450796.1 1573954 R 467705 CDS YP_001450797.1 157149701 5599758 complement(1574896..1575411) 1 NC_009785.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 1575411 lacB-2 5599758 lacB-2 Streptococcus gordonii str. Challis substr. CH1 galactose-6-phosphate isomerase subunit LacB YP_001450797.1 1574896 R 467705 CDS YP_001450798.1 157150430 5598056 complement(1575428..1575853) 1 NC_009785.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 1575853 lacA-1 5598056 lacA-1 Streptococcus gordonii str. Challis substr. CH1 galactose-6-phosphate isomerase subunit LacA YP_001450798.1 1575428 R 467705 CDS YP_001450799.1 157150038 5599238 complement(1576456..1577934) 1 NC_009785.1 identified by match to protein family HMM PF03611; PTS system transporter subunit IIC 1577934 5599238 SGO_1520 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIC YP_001450799.1 1576456 R 467705 CDS YP_001450800.1 157149725 5598286 complement(1578030..1578335) 1 NC_009785.1 PTS system galactitol/fructose specific transporter subunit IIB 1578335 5598286 SGO_1521 Streptococcus gordonii str. Challis substr. CH1 PTS system galactitol/fructose specific transporter subunit IIB YP_001450800.1 1578030 R 467705 CDS YP_001450801.1 157151059 5599694 complement(1578373..1578849) 1 NC_009785.1 identified by match to protein family HMM PF00359; PTS system galactitol/fructose specific transporter subunit IIBC 1578849 5599694 SGO_1522 Streptococcus gordonii str. Challis substr. CH1 PTS system galactitol/fructose specific transporter subunit IIBC YP_001450801.1 1578373 R 467705 CDS YP_001450802.1 157149656 5598032 complement(1578982..1579953) 1 NC_009785.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 1579953 lacD-1 5598032 lacD-1 Streptococcus gordonii str. Challis substr. CH1 tagatose 1,6-diphosphate aldolase YP_001450802.1 1578982 R 467705 CDS YP_001450803.1 157151354 5598600 complement(1579955..1580884) 1 NC_009785.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase 1580884 lacC-2 5598600 lacC-2 Streptococcus gordonii str. Challis substr. CH1 tagatose-6-phosphate kinase YP_001450803.1 1579955 R 467705 CDS YP_001450804.1 157149736 5599618 complement(1580895..1581410) 1 NC_009785.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB 1581410 lacB-1 5599618 lacB-1 Streptococcus gordonii str. Challis substr. CH1 galactose-6-phosphate isomerase subunit LacB YP_001450804.1 1580895 R 467705 CDS YP_001450805.1 157150143 5598649 complement(1581427..1581852) 1 NC_009785.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA 1581852 lacA-2 5598649 lacA-2 Streptococcus gordonii str. Challis substr. CH1 galactose-6-phosphate isomerase subunit LacA YP_001450805.1 1581427 R 467705 CDS YP_001450806.1 157150652 5597820 complement(1582053..1582808) 1 NC_009785.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; lactose phosphotransferase system repressor 1582808 5597820 SGO_1527 Streptococcus gordonii str. Challis substr. CH1 lactose phosphotransferase system repressor YP_001450806.1 1582053 R 467705 CDS YP_001450807.1 157151076 5598837 complement(1582748..1582867) 1 NC_009785.1 hypothetical protein 1582867 5598837 SGO_1528 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450807.1 1582748 R 467705 CDS YP_001450808.1 157151508 5597993 complement(1582954..1583811) 1 NC_009785.1 hypothetical protein 1583811 5597993 SGO_1529 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450808.1 1582954 R 467705 CDS YP_001450809.1 157149888 5599144 complement(1584004..1586004) 1 NC_009785.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1586004 5599144 SGO_1530 Streptococcus gordonii str. Challis substr. CH1 methionyl-tRNA synthetase YP_001450809.1 1584004 R 467705 CDS YP_001450810.1 157150318 5599755 1586546..1587373 1 NC_009785.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1587373 xth 5599755 xth Streptococcus gordonii str. Challis substr. CH1 exodeoxyribonuclease III YP_001450810.1 1586546 D 467705 CDS YP_001450811.1 157149850 5599443 1587385..1587771 1 NC_009785.1 identified by match to protein family HMM PF00903; glyoxalase 1587771 5599443 SGO_1532 Streptococcus gordonii str. Challis substr. CH1 glyoxalase YP_001450811.1 1587385 D 467705 CDS YP_001450812.1 157150568 5599218 complement(1587799..1588428) 1 NC_009785.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 1588428 nth 5599218 nth Streptococcus gordonii str. Challis substr. CH1 endonuclease III YP_001450812.1 1587799 R 467705 CDS YP_001450813.1 157150167 5598981 complement(1588523..1588876) 1 NC_009785.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family transcription regulator 1588876 5598981 SGO_1534 Streptococcus gordonii str. Challis substr. CH1 ArsC family transcription regulator YP_001450813.1 1588523 R 467705 CDS YP_001450814.1 157150807 5599283 complement(1588886..1589383) 1 NC_009785.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 1589383 ogt 5599283 ogt Streptococcus gordonii str. Challis substr. CH1 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001450814.1 1588886 R 467705 CDS YP_001450815.1 157150399 5598549 complement(1589431..1590285) 1 NC_009785.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 1590285 5598549 SGO_1536 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450815.1 1589431 R 467705 CDS YP_001450816.1 157151532 5599304 complement(1590288..1590611) 1 NC_009785.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 1590611 5599304 SGO_1537 Streptococcus gordonii str. Challis substr. CH1 DNA replication intiation control protein YabA YP_001450816.1 1590288 R 467705 CDS YP_001450817.1 157151029 5599383 complement(1590626..1591525) 1 NC_009785.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.; DNA polymerase III subunit delta' 1591525 5599383 SGO_1538 Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III subunit delta' YP_001450817.1 1590626 R 467705 CDS YP_001450818.1 157151481 5598087 complement(1591522..1592160) 1 NC_009785.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1592160 tmk 5598087 tmk Streptococcus gordonii str. Challis substr. CH1 thymidylate kinase YP_001450818.1 1591522 R 467705 CDS YP_001450819.1 157151035 5598963 1592414..1593277 1 NC_009785.1 identified by match to protein family HMM PF02588; YitT family protein 1593277 5598963 SGO_1540 Streptococcus gordonii str. Challis substr. CH1 YitT family protein YP_001450819.1 1592414 D 467705 CDS YP_001450820.1 157150678 5598077 complement(1593321..1593737) 1 NC_009785.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1593737 atpC 5598077 atpC Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit epsilon YP_001450820.1 1593321 R 467705 CDS YP_001450821.1 157151073 5598792 complement(1593748..1595154) 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1595154 atpD 5598792 atpD Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit beta YP_001450821.1 1593748 R 467705 CDS YP_001450822.1 157149821 5598003 complement(1595192..1596073) 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1596073 atpG 5598003 atpG Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit gamma YP_001450822.1 1595192 R 467705 CDS YP_001450823.1 157151415 5598046 complement(1596089..1597594) 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1597594 atpA 5598046 atpA Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit alpha YP_001450823.1 1596089 R 467705 CDS YP_001450824.1 157150701 5598444 complement(1597609..1598145) 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1598145 atpH 5598444 atpH Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit delta YP_001450824.1 1597609 R 467705 CDS YP_001450825.1 157150236 5598740 complement(1598145..1598639) 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1598639 atpF 5598740 atpF Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit B YP_001450825.1 1598145 R 467705 CDS YP_001450826.1 157150039 5598589 complement(1598659..1599372) 1 NC_009785.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1599372 atpB 5598589 atpB Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit A YP_001450826.1 1598659 R 467705 CDS YP_001450827.1 157151666 5599293 complement(1599408..1599608) 1 NC_009785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1599608 atpE 5599293 atpE Streptococcus gordonii str. Challis substr. CH1 F0F1 ATP synthase subunit C YP_001450827.1 1599408 R 467705 CDS YP_001450828.1 157151051 5599521 complement(1599915..1600415) 1 NC_009785.1 identified by match to protein family HMM PF01569; PAP2 family protein 1600415 5599521 SGO_1549 Streptococcus gordonii str. Challis substr. CH1 PAP2 family protein YP_001450828.1 1599915 R 467705 CDS YP_001450829.1 157151474 5598048 complement(1600568..1602964) 1 NC_009785.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 1602964 glgP-1 5598048 glgP-1 Streptococcus gordonii str. Challis substr. CH1 glycogen phosphorylase YP_001450829.1 1600568 R 467705 CDS YP_001450830.1 157151006 5598897 complement(1603179..1604609) 1 NC_009785.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1604609 glgA 5598897 glgA Streptococcus gordonii str. Challis substr. CH1 glycogen synthase YP_001450830.1 1603179 R 467705 CDS YP_001450831.1 157150622 5598150 complement(1604606..1605802) 1 NC_009785.1 identified by match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit 1605802 glgD 5598150 glgD Streptococcus gordonii str. Challis substr. CH1 glucose-1-phosphate adenylyltransferase, GlgD subunit YP_001450831.1 1604606 R 467705 CDS YP_001450832.1 157149912 5598880 complement(1605735..1606877) 1 NC_009785.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1606877 glgC 5598880 glgC Streptococcus gordonii str. Challis substr. CH1 glucose-1-phosphate adenylyltransferase YP_001450832.1 1605735 R 467705 CDS YP_001450833.1 157151435 5599664 complement(1607062..1608963) 1 NC_009785.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1608963 glgB 5599664 glgB Streptococcus gordonii str. Challis substr. CH1 glycogen branching protein YP_001450833.1 1607062 R 467705 CDS YP_001450834.1 157150864 5599647 complement(1609221..1610954) 1 NC_009785.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 1610954 ptsI 5599647 ptsI Streptococcus gordonii str. Challis substr. CH1 phosphoenolpyruvate-protein phosphotransferase YP_001450834.1 1609221 R 467705 CDS YP_001450835.1 157150264 5598438 complement(1610956..1611219) 1 NC_009785.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1611219 5598438 SGO_1556 Streptococcus gordonii str. Challis substr. CH1 phosphocarrier protein HPr YP_001450835.1 1610956 R 467705 CDS YP_001450836.1 157149711 5599529 1611666..1611884 1 NC_009785.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; NrdH-redoxin 1611884 5599529 SGO_1557 Streptococcus gordonii str. Challis substr. CH1 NrdH-redoxin YP_001450836.1 1611666 D 467705 CDS YP_001450837.1 157150204 5597833 1611969..1614128 1 NC_009785.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1614128 nrdE 5597833 nrdE Streptococcus gordonii str. Challis substr. CH1 ribonucleotide-diphosphate reductase subunit alpha YP_001450837.1 1611969 D 467705 CDS YP_001450838.1 157149762 5598089 1614297..1615256 1 NC_009785.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1615256 nrdF 5598089 nrdF Streptococcus gordonii str. Challis substr. CH1 ribonucleotide-diphosphate reductase subunit beta YP_001450838.1 1614297 D 467705 CDS YP_001450839.1 157150069 5598013 complement(1615354..1616022) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 1616022 5598013 SGO_1560 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001450839.1 1615354 R 467705 CDS YP_001450840.1 157151458 5599490 complement(1616027..1616560) 1 NC_009785.1 putative zinc metallopeptidase 1616560 5599490 SGO_1561 Streptococcus gordonii str. Challis substr. CH1 putative zinc metallopeptidase YP_001450840.1 1616027 R 467705 CDS YP_001450841.1 157149847 5598785 complement(1616579..1617319) 1 NC_009785.1 hypothetical protein 1617319 5598785 SGO_1562 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450841.1 1616579 R 467705 CDS YP_001450842.1 157149926 5599784 complement(1617439..1617558) 1 NC_009785.1 hypothetical protein 1617558 5599784 SGO_1563 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450842.1 1617439 R 467705 CDS YP_001450843.1 157150523 5599767 complement(1617555..1617758) 1 NC_009785.1 identified by match to protein family HMM PF01381; transcription regulator, -like protein 1617758 5599767 SGO_1564 Streptococcus gordonii str. Challis substr. CH1 transcription regulator, -like protein YP_001450843.1 1617555 R 467705 CDS YP_001450844.1 157151527 5597895 complement(1618239..1619381) 1 NC_009785.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 1619381 argD 5597895 argD Streptococcus gordonii str. Challis substr. CH1 acetylornithine aminotransferase YP_001450844.1 1618239 R 467705 CDS YP_001450845.1 157149668 5599747 complement(1619384..1620121) 1 NC_009785.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1620121 argB 5599747 argB Streptococcus gordonii str. Challis substr. CH1 acetylglutamate kinase YP_001450845.1 1619384 R 467705 CDS YP_001450846.1 157150608 5598467 complement(1620133..1621326) 1 NC_009785.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1621326 argJ 5598467 argJ Streptococcus gordonii str. Challis substr. CH1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001450846.1 1620133 R 467705 CDS YP_001450847.1 157149756 5598909 complement(1621344..1622366) 1 NC_009785.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1622366 argC 5598909 argC Streptococcus gordonii str. Challis substr. CH1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001450847.1 1621344 R 467705 CDS YP_001450848.1 157150203 5598051 complement(1622703..1625321) 1 NC_009785.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1625321 alaS 5598051 alaS Streptococcus gordonii str. Challis substr. CH1 alanyl-tRNA synthetase YP_001450848.1 1622703 R 467705 CDS YP_001450849.1 157150053 5598106 complement(1625356..1625841) 1 NC_009785.1 identified by match to protein family HMM PF04525; hypothetical protein 1625841 5598106 SGO_1571 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450849.1 1625356 R 467705 CDS YP_001450850.1 157151667 5599162 complement(1626070..1626999) 1 NC_009785.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; foldase PrsA 1626999 prsA 5599162 prsA Streptococcus gordonii str. Challis substr. CH1 foldase PrsA YP_001450850.1 1626070 R 467705 CDS YP_001450851.1 157150173 5597810 complement(1627202..1627888) 1 NC_009785.1 identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; O-methyltransferase family protein 1627888 5597810 SGO_1573 Streptococcus gordonii str. Challis substr. CH1 O-methyltransferase family protein YP_001450851.1 1627202 R 467705 CDS YP_001450852.1 157149739 5599005 complement(1627890..1629692) 1 NC_009785.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F 1629692 pepF-1 5599005 pepF-1 Streptococcus gordonii str. Challis substr. CH1 oligoendopeptidase F YP_001450852.1 1627890 R 467705 CDS YP_001450853.1 157149983 5599819 complement(1629852..1630805) 1 NC_009785.1 identified by match to protein family HMM PF06054; competence protein CoiA 1630805 5599819 SGO_1575 Streptococcus gordonii str. Challis substr. CH1 competence protein CoiA YP_001450853.1 1629852 R 467705 CDS YP_001450854.1 157151610 5599546 complement(1630898..1632253) 1 NC_009785.1 required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIC component 1632253 celD 5599546 celD Streptococcus gordonii str. Challis substr. CH1 cellobiose phosphotransferase system IIC component YP_001450854.1 1630898 R 467705 CDS YP_001450855.1 157151195 5598220 complement(1632274..1632759) 1 NC_009785.1 hypothetical protein 1632759 5598220 SGO_1577 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450855.1 1632274 R 467705 CDS YP_001450856.1 157150188 5597785 complement(1632787..1633104) 1 NC_009785.1 required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIA component 1633104 celC 5597785 celC Streptococcus gordonii str. Challis substr. CH1 cellobiose phosphotransferase system IIA component YP_001450856.1 1632787 R 467705 CDS YP_001450857.1 157149746 5598578 complement(1633121..1635109) 1 NC_009785.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; BigG family transcription antiterminator 1635109 5598578 SGO_1579 Streptococcus gordonii str. Challis substr. CH1 BigG family transcription antiterminator YP_001450857.1 1633121 R 467705 CDS YP_001450858.1 157151009 5599596 complement(1635161..1635475) 1 NC_009785.1 required for cellobiose uptake and metabolism; PTS system cellobiose transporter subunit IIB 1635475 celB 5599596 celB Streptococcus gordonii str. Challis substr. CH1 PTS system cellobiose transporter subunit IIB YP_001450858.1 1635161 R 467705 CDS YP_001450859.1 157151467 5598142 complement(1635586..1635825) 1 NC_009785.1 identified by match to protein family HMM PF03083; MtN3/saliva family protein 1635825 5598142 SGO_1581 Streptococcus gordonii str. Challis substr. CH1 MtN3/saliva family protein YP_001450859.1 1635586 R 467705 CDS YP_001450860.1 157149805 5599729 complement(1635917..1637350) 1 NC_009785.1 converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism; 6-phospho-beta-glucosidase 1637350 celA 5599729 celA Streptococcus gordonii str. Challis substr. CH1 6-phospho-beta-glucosidase YP_001450860.1 1635917 R 467705 CDS YP_001450861.1 157150218 5599678 1637551..1637916 1 NC_009785.1 hypothetical protein 1637916 5599678 SGO_1583 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450861.1 1637551 D 467705 CDS YP_001450862.1 157151270 5599055 complement(1637961..1639133) 1 NC_009785.1 identified by match to protein family HMM PF01306; match to protein family HMM PF07690; anion symport for sucrose, putative 1639133 5599055 SGO_1584 Streptococcus gordonii str. Challis substr. CH1 anion symport for sucrose, putative YP_001450862.1 1637961 R 467705 CDS YP_001450863.1 157151599 5599594 complement(1639233..1640615) 1 NC_009785.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1640615 5599594 SGO_1585 Streptococcus gordonii str. Challis substr. CH1 D-alanyl-D-alanine carboxypeptidase YP_001450863.1 1639233 R 467705 CDS YP_001450864.1 157149982 5598408 complement(1640755..1641462) 1 NC_009785.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502; glucosamine-6-phosphate isomerase 1641462 nagB 5598408 nagB Streptococcus gordonii str. Challis substr. CH1 glucosamine-6-phosphate isomerase YP_001450864.1 1640755 R 467705 CDS YP_001450865.1 157150443 5599790 1641770..1642798 1 NC_009785.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1642798 queA 5599790 queA Streptococcus gordonii str. Challis substr. CH1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001450865.1 1641770 D 467705 CDS YP_001450866.1 157151513 5599220 1642810..1643280 1 NC_009785.1 identified by similarity to GB:AAN65260.1; match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor 1643280 arcR 5599220 arcR Streptococcus gordonii str. Challis substr. CH1 arginine repressor YP_001450866.1 1642810 D 467705 CDS YP_001450867.1 157150355 5597858 complement(1643315..1644649) 1 NC_009785.1 identified by similarity to GB:AAN65259.1; match to protein family HMM PF01546; match to protein family HMM TIGR01887; hypothetical protein 1644649 arcT 5597858 arcT Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450867.1 1643315 R 467705 CDS YP_001450868.1 157150815 5599386 complement(1644668..1646182) 1 NC_009785.1 identified by similarity to GB:AAN65258.1; match to protein family HMM PF03606; arginine-ornithine antiporter 1646182 arcD 5599386 arcD Streptococcus gordonii str. Challis substr. CH1 arginine-ornithine antiporter YP_001450868.1 1644668 R 467705 CDS YP_001450869.1 157150759 5598534 complement(1646351..1647298) 1 NC_009785.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1647298 arcC 5598534 arcC Streptococcus gordonii str. Challis substr. CH1 carbamate kinase YP_001450869.1 1646351 R 467705 CDS YP_001450870.1 157151222 5598638 complement(1647474..1648490) 1 NC_009785.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1648490 arcB 5598638 arcB Streptococcus gordonii str. Challis substr. CH1 ornithine carbamoyltransferase YP_001450870.1 1647474 R 467705 CDS YP_001450871.1 157150672 5597735 complement(1648541..1649770) 1 NC_009785.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1649770 arcA 5597735 arcA Streptococcus gordonii str. Challis substr. CH1 arginine deiminase YP_001450871.1 1648541 R 467705 CDS YP_001450872.1 157151130 5598801 complement(1650030..1650716) 1 NC_009785.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/Fnr family protein 1650716 5598801 SGO_1594 Streptococcus gordonii str. Challis substr. CH1 Crp/Fnr family protein YP_001450872.1 1650030 R 467705 CDS YP_001450873.1 157149986 5597898 complement(1650793..1651290) 1 NC_009785.1 identified by match to protein family HMM PF07853; integral membrane protein 1651290 5597898 SGO_1595 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001450873.1 1650793 R 467705 CDS YP_001450874.1 157150314 5597836 complement(1651277..1651558) 1 NC_009785.1 identified by match to protein family HMM PF01022; match to protein family HMM PF08279; transcriptional regulator 1651558 5597836 SGO_1596 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001450874.1 1651277 R 467705 CDS YP_001450875.1 157150749 5599447 complement(1651536..1652324) 1 NC_009785.1 hypothetical protein 1652324 5599447 SGO_1597 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450875.1 1651536 R 467705 CDS YP_001450876.1 157151312 5598656 complement(1652529..1653602) 1 NC_009785.1 hypothetical protein 1653602 5598656 SGO_1598 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450876.1 1652529 R 467705 CDS YP_001450877.1 157150015 5598379 complement(1653714..1654319) 1 NC_009785.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; manganese-dependent superoxide dismutase 1654319 sodA 5598379 sodA Streptococcus gordonii str. Challis substr. CH1 manganese-dependent superoxide dismutase YP_001450877.1 1653714 R 467705 CDS YP_001450878.1 157150921 5599666 complement(1654392..1655429) 1 NC_009785.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1655429 holA 5599666 holA Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III subunit delta YP_001450878.1 1654392 R 467705 CDS YP_001450879.1 157150217 5598328 complement(1655520..1657760) 1 NC_009785.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein celB 1657760 celB 5598328 celB Streptococcus gordonii str. Challis substr. CH1 DNA internalization-related competence protein celB YP_001450879.1 1655520 R 467705 CDS YP_001450880.1 157149750 5599303 complement(1657744..1658409) 1 NC_009785.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein CelA 1658409 celA 5599303 celA Streptococcus gordonii str. Challis substr. CH1 competence protein CelA YP_001450880.1 1657744 R 467705 CDS YP_001450881.1 157151641 5599869 complement(1658506..1659033) 1 NC_009785.1 hypothetical protein 1659033 5599869 SGO_1603 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450881.1 1658506 R 467705 CDS YP_001450882.1 157151198 5599561 complement(1659072..1659782) 1 NC_009785.1 identified by match to protein family HMM PF01553; acyltransferase family protein 1659782 5599561 SGO_1604 Streptococcus gordonii str. Challis substr. CH1 acyltransferase family protein YP_001450882.1 1659072 R 467705 CDS YP_001450883.1 157150497 5597779 1659942..1662311 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; P-type ATPase, metal cation transport 1662311 5597779 SGO_1605 Streptococcus gordonii str. Challis substr. CH1 P-type ATPase, metal cation transport YP_001450883.1 1659942 D 467705 CDS YP_001450884.1 157150028 5599117 1662380..1663162 1 NC_009785.1 identified by match to protein family HMM PF05175; DNA methyltransferase signature protein 1663162 5599117 SGO_1606 Streptococcus gordonii str. Challis substr. CH1 DNA methyltransferase signature protein YP_001450884.1 1662380 D 467705 CDS YP_001450885.1 157150450 5598749 1663152..1663418 1 NC_009785.1 identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein 1663418 5598749 SGO_1607 Streptococcus gordonii str. Challis substr. CH1 GIY-YIG catalytic domain-containing protein YP_001450885.1 1663152 D 467705 CDS YP_001450886.1 157150549 5599764 complement(1664489..1666060) 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1666060 5599764 SGO_1609 Streptococcus gordonii str. Challis substr. CH1 DEAD/DEAH box helicase YP_001450886.1 1664489 R 467705 CDS YP_001450887.1 157151092 5599017 1666419..1666817 1 NC_009785.1 hypothetical protein 1666817 5599017 SGO_1610 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450887.1 1666419 D 467705 CDS YP_001450888.1 157151660 5597958 complement(1666849..1668048) 1 NC_009785.1 identified by match to protein family HMM PF00180; isocitrate dehydrogenase 1668048 icd 5597958 icd Streptococcus gordonii str. Challis substr. CH1 isocitrate dehydrogenase YP_001450888.1 1666849 R 467705 CDS YP_001450889.1 157149695 5599324 complement(1668050..1669168) 1 NC_009785.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1669168 citZ 5599324 citZ Streptococcus gordonii str. Challis substr. CH1 citrate synthase YP_001450889.1 1668050 R 467705 CDS YP_001450890.1 157150282 5598107 complement(1669171..1671834) 1 NC_009785.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1671834 acnA 5598107 acnA Streptococcus gordonii str. Challis substr. CH1 aconitate hydratase YP_001450890.1 1669171 R 467705 CDS YP_001450891.1 157149674 5599451 complement(1672050..1672958) 1 NC_009785.1 identified by match to protein family HMM PF01544; magnesium/cobalt transporter CorA 1672958 5599451 SGO_1614 Streptococcus gordonii str. Challis substr. CH1 magnesium/cobalt transporter CorA YP_001450891.1 1672050 R 467705 CDS YP_001450892.1 157150261 5598394 complement(1673188..1673934) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 1673934 5598394 SGO_1615 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001450892.1 1673188 R 467705 CDS YP_001450893.1 157150802 5599258 complement(1673966..1674214) 1 NC_009785.1 methyltransferase 1674214 5599258 SGO_1616 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001450893.1 1673966 R 467705 CDS YP_001450894.1 157151241 5598566 complement(1674529..1676073) 1 NC_009785.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1676073 prfC 5598566 prfC Streptococcus gordonii str. Challis substr. CH1 peptide chain release factor 3 YP_001450894.1 1674529 R 467705 CDS YP_001450895.1 157150158 5599776 complement(1676192..1676302) 1 NC_009785.1 hypothetical protein 1676302 5599776 SGO_1618 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450895.1 1676192 R 467705 CDS YP_001450896.1 157150609 5599548 complement(1676623..1679319) 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase 1679319 5599548 SGO_1619 Streptococcus gordonii str. Challis substr. CH1 cation transporter E1-E2 family ATPase YP_001450896.1 1676623 R 467705 CDS YP_001450897.1 157150239 5598907 complement(1679540..1679926) 1 NC_009785.1 identified by match to protein family HMM PF09148; hypothetical protein 1679926 5598907 SGO_1620 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450897.1 1679540 R 467705 CDS YP_001450898.1 157150743 5599044 1680031..1681332 1 NC_009785.1 identified by match to protein family HMM PF01966; HD domain-containing protein 1681332 5599044 SGO_1621 Streptococcus gordonii str. Challis substr. CH1 HD domain-containing protein YP_001450898.1 1680031 D 467705 CDS YP_001450899.1 157151500 5598671 1681334..1682143 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 1682143 5598671 SGO_1622 Streptococcus gordonii str. Challis substr. CH1 Cof family protein YP_001450899.1 1681334 D 467705 CDS YP_001450900.1 157149809 5599102 1682128..1683357 1 NC_009785.1 identified by match to protein family HMM PF02388; MurM protein 1683357 murM 5599102 murM Streptococcus gordonii str. Challis substr. CH1 MurM protein YP_001450900.1 1682128 D 467705 CDS YP_001450901.1 157150572 5598181 1683372..1684607 1 NC_009785.1 identified by match to protein family HMM PF02388; MurN protein 1684607 murN 5598181 murN Streptococcus gordonii str. Challis substr. CH1 MurN protein YP_001450901.1 1683372 D 467705 CDS YP_001450902.1 157151138 5598969 complement(1684670..1685326) 1 NC_009785.1 identified by match to protein family HMM PF00571; acetoin utilization putative/CBS domain-containing protein 1685326 5598969 SGO_1625 Streptococcus gordonii str. Challis substr. CH1 acetoin utilization putative/CBS domain-containing protein YP_001450902.1 1684670 R 467705 CDS YP_001450903.1 157151679 5597883 complement(1685950..1686660) 1 NC_009785.1 identified by match to protein family HMM PF00005; branched-chain amino acid transport protein 1686660 5597883 SGO_1626 Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid transport protein YP_001450903.1 1685950 R 467705 CDS YP_001450904.1 157151229 5598374 complement(1686660..1687424) 1 NC_009785.1 identified by match to protein family HMM PF00005; ATP-binding protein; branched-chain amino acid transport protein 1687424 5598374 SGO_1627 Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid transport protein YP_001450904.1 1686660 R 467705 CDS YP_001450905.1 157151236 5597816 complement(1687424..1688377) 1 NC_009785.1 identified by match to protein family HMM PF02653; branched-chain amino acid permease 1688377 braE 5597816 braE Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid permease YP_001450905.1 1687424 R 467705 CDS YP_001450906.1 157150789 5598639 complement(1688381..1689250) 1 NC_009785.1 identified by match to protein family HMM PF02653; branched-chain amino acid permease 1689250 livH 5598639 livH Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid permease YP_001450906.1 1688381 R 467705 CDS YP_001450907.1 157150625 5598593 complement(1689409..1690575) 1 NC_009785.1 identified by match to protein family HMM PF01094; branched-chain amino acid transport protein 1690575 5598593 SGO_1630 Streptococcus gordonii str. Challis substr. CH1 branched-chain amino acid transport protein YP_001450907.1 1689409 R 467705 CDS YP_001450908.1 157149921 5598874 complement(1690665..1690934) 1 NC_009785.1 hypothetical protein 1690934 5598874 SGO_1631 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450908.1 1690665 R 467705 CDS YP_001450909.1 157151545 5599213 complement(1691012..1691602) 1 NC_009785.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1691602 clpP 5599213 clpP Streptococcus gordonii str. Challis substr. CH1 ATP-dependent Clp protease proteolytic subunit YP_001450909.1 1691012 R 467705 CDS YP_001450910.1 157151365 5598998 complement(1691802..1692431) 1 NC_009785.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1692431 upp 5598998 upp Streptococcus gordonii str. Challis substr. CH1 uracil phosphoribosyltransferase YP_001450910.1 1691802 R 467705 CDS YP_001450911.1 157149965 5597778 complement(1692529..1695189) 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 1695189 5597778 SGO_1634 Streptococcus gordonii str. Challis substr. CH1 magnesium-translocating P-type ATPase YP_001450911.1 1692529 R 467705 CDS YP_001450912.1 157151121 5599610 complement(1695702..1696868) 1 NC_009785.1 identified by match to protein family HMM PF00155; L-cysteine desulfhydrase 1696868 5599610 SGO_1635 Streptococcus gordonii str. Challis substr. CH1 L-cysteine desulfhydrase YP_001450912.1 1695702 R 467705 CDS YP_001450913.1 157150187 5597913 complement(1696870..1697964) 1 NC_009785.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 1697964 5597913 SGO_1636 Streptococcus gordonii str. Challis substr. CH1 cystathionine gamma-synthase YP_001450913.1 1696870 R 467705 CDS YP_001450914.1 157150963 5598606 complement(1698116..1699747) 1 NC_009785.1 identified by match to protein family HMM PF01943; polysaccharide transporter 1699747 5598606 SGO_1637 Streptococcus gordonii str. Challis substr. CH1 polysaccharide transporter YP_001450914.1 1698116 R 467705 CDS YP_001450915.1 157149815 5598250 1699845..1701290 1 NC_009785.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1701290 murE 5598250 murE Streptococcus gordonii str. Challis substr. CH1 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase YP_001450915.1 1699845 D 467705 CDS YP_001450916.1 157150425 5598177 complement(1701541..1702194) 1 NC_009785.1 identified by match to protein family HMM PF08820; hypothetical protein 1702194 5598177 SGO_1639 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450916.1 1701541 R 467705 CDS YP_001450917.1 157150496 5599245 complement(1702187..1702699) 1 NC_009785.1 identified by match to protein family HMM PF06520; hypothetical protein 1702699 5599245 SGO_1640 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450917.1 1702187 R 467705 CDS YP_001450918.1 157150428 5599119 complement(1703020..1704111) 1 NC_009785.1 identified by match to protein family HMM PF05913; hypothetical protein 1704111 5599119 SGO_1641 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450918.1 1703020 R 467705 CDS YP_001450919.1 157149784 5599242 complement(1704302..1704811) 1 NC_009785.1 hypothetical protein 1704811 5599242 SGO_1642 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450919.1 1704302 R 467705 CDS YP_001450920.1 157151319 5598777 complement(1704833..1706200) 1 NC_009785.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system cellobiose-specific transporter subunit IIC 1706200 5598777 SGO_1643 Streptococcus gordonii str. Challis substr. CH1 PTS system cellobiose-specific transporter subunit IIC YP_001450920.1 1704833 R 467705 CDS YP_001450921.1 157150255 5597827 complement(1706230..1706550) 1 NC_009785.1 identified by match to protein family HMM PF02302; PTS system cellobiose-specific transporter subunit IIB 1706550 5597827 SGO_1644 Streptococcus gordonii str. Challis substr. CH1 PTS system cellobiose-specific transporter subunit IIB YP_001450921.1 1706230 R 467705 CDS YP_001450922.1 157149676 5599658 complement(1706563..1706886) 1 NC_009785.1 identified by match to protein family HMM PF02255; PTS cellobiose-specific enzyme IIA 1706886 5599658 SGO_1645 Streptococcus gordonii str. Challis substr. CH1 PTS cellobiose-specific enzyme IIA YP_001450922.1 1706563 R 467705 CDS YP_001450923.1 157151505 5598373 complement(1706976..1707548) 1 NC_009785.1 identified by match to protein family HMM PF06271; hypothetical protein 1707548 5598373 SGO_1646 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450923.1 1706976 R 467705 CDS YP_001450924.1 157150005 5599157 complement(1707557..1709446) 1 NC_009785.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; BigG family transcription antiterminator 1709446 5599157 SGO_1647 Streptococcus gordonii str. Challis substr. CH1 BigG family transcription antiterminator YP_001450924.1 1707557 R 467705 CDS YP_001450925.1 157150485 5598490 complement(1709713..1710648) 1 NC_009785.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1710648 ppx1 5598490 ppx1 Streptococcus gordonii str. Challis substr. CH1 putative manganese-dependent inorganic pyrophosphatase YP_001450925.1 1709713 R 467705 CDS YP_001450926.1 157151404 5599138 complement(1710784..1711593) 1 NC_009785.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase-activating enzyme 1711593 act 5599138 act Streptococcus gordonii str. Challis substr. CH1 pyruvate formate-lyase-activating enzyme YP_001450926.1 1710784 R 467705 CDS YP_001450927.1 157150237 5599816 complement(1711886..1713970) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 1713970 5599816 SGO_1650 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450927.1 1711886 R 467705 CDS YP_001450928.1 157151208 5598635 complement(1714343..1716682) 1 NC_009785.1 identified by match to protein family HMM PF03372; LPXTG cell wall surface protein 1716682 5598635 SGO_1651 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001450928.1 1714343 R 467705 CDS YP_001450929.1 157151651 5597763 complement(1716882..1718507) 1 NC_009785.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; intracellular glycosyl hydrolase 1718507 5597763 SGO_1652 Streptococcus gordonii str. Challis substr. CH1 intracellular glycosyl hydrolase YP_001450929.1 1716882 R 467705 CDS YP_001450930.1 157150064 5597741 complement(1718643..1720652) 1 NC_009785.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992; trehalose PTS enzyme II 1720652 5597741 SGO_1653 Streptococcus gordonii str. Challis substr. CH1 trehalose PTS enzyme II YP_001450930.1 1718643 R 467705 CDS YP_001450931.1 157149890 5599498 1720832..1721542 1 NC_009785.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon transcription repressor 1721542 5599498 SGO_1654 Streptococcus gordonii str. Challis substr. CH1 trehalose operon transcription repressor YP_001450931.1 1720832 D 467705 CDS YP_001450932.1 157150351 5598619 complement(1721909..1723249) 1 NC_009785.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin 1723249 5598619 SGO_1655 Streptococcus gordonii str. Challis substr. CH1 hemolysin YP_001450932.1 1721909 R 467705 CDS YP_001450933.1 157151329 5599391 complement(1723341..1724987) 1 NC_009785.1 phosphoenolpyruvate carboxykinase 1724987 5599391 SGO_1656 Streptococcus gordonii str. Challis substr. CH1 phosphoenolpyruvate carboxykinase YP_001450933.1 1723341 R 467705 CDS YP_001450934.1 157150736 5598237 complement(1725087..1726211) 1 NC_009785.1 identified by match to protein family HMM PF01594; membrane protein 1726211 5598237 SGO_1657 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001450934.1 1725087 R 467705 CDS YP_001450935.1 157149973 5598680 1726268..1727080 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1727080 5598680 SGO_1658 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001450935.1 1726268 D 467705 CDS YP_001450936.1 157150617 5597959 1727077..1728639 1 NC_009785.1 hypothetical protein 1728639 5597959 SGO_1659 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450936.1 1727077 D 467705 CDS YP_001450937.1 157151080 5598895 complement(1729388..1729942) 1 NC_009785.1 identified by match to protein family HMM PF06962; match to protein family HMM PF08241; methyltransferase 1729942 5598895 SGO_1660 Streptococcus gordonii str. Challis substr. CH1 methyltransferase YP_001450937.1 1729388 R 467705 CDS YP_001450938.1 157149689 5597986 complement(1729936..1730874) 1 NC_009785.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 1730874 5597986 SGO_1661 Streptococcus gordonii str. Challis substr. CH1 radical SAM family protein YP_001450938.1 1729936 R 467705 CDS YP_001450939.1 157150157 5598212 complement(1730943..1731251) 1 NC_009785.1 identified by match to protein family HMM PF01035; putative methylated-DNA methyltransferase 1731251 5598212 SGO_1662 Streptococcus gordonii str. Challis substr. CH1 putative methylated-DNA methyltransferase YP_001450939.1 1730943 R 467705 CDS YP_001450940.1 157151451 5599572 complement(1731347..1731997) 1 NC_009785.1 identified by match to protein family HMM PF01569; PAP2 family protein 1731997 5599572 SGO_1663 Streptococcus gordonii str. Challis substr. CH1 PAP2 family protein YP_001450940.1 1731347 R 467705 CDS YP_001450941.1 157150878 5598734 complement(1731987..1732544) 1 NC_009785.1 hypothetical protein 1732544 5598734 SGO_1664 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450941.1 1731987 R 467705 CDS YP_001450942.1 157150281 5598417 complement(1732882..1733388) 1 NC_009785.1 identified by match to protein family HMM PF00588; rRNA methylase 1733388 5598417 SGO_1665 Streptococcus gordonii str. Challis substr. CH1 rRNA methylase YP_001450942.1 1732882 R 467705 CDS YP_001450943.1 157150510 5598528 1733570..1735099 1 NC_009785.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 1735099 trkA 5598528 trkA Streptococcus gordonii str. Challis substr. CH1 potassium transporter peripheral membrane protein YP_001450943.1 1733570 D 467705 CDS YP_001450944.1 157149658 5599091 1735104..1736546 1 NC_009785.1 identified by match to protein family HMM PF02386; Trk family potassium uptake protein 1736546 trkH 5599091 trkH Streptococcus gordonii str. Challis substr. CH1 Trk family potassium uptake protein YP_001450944.1 1735104 D 467705 CDS YP_001450945.1 157151462 5598598 complement(1736919..1737173) 1 NC_009785.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1737173 5598598 SGO_1668 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450945.1 1736919 R 467705 CDS YP_001450946.1 157149683 5598779 complement(1737170..1737898) 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1737898 5598779 SGO_1669 Streptococcus gordonii str. Challis substr. CH1 ribosomal large subunit pseudouridine synthase B YP_001450946.1 1737170 R 467705 CDS YP_001450947.1 157151269 5598263 complement(1737934..1738500) 1 NC_009785.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 1738500 scpB 5598263 scpB Streptococcus gordonii str. Challis substr. CH1 segregation and condensation protein B YP_001450947.1 1737934 R 467705 CDS YP_001450948.1 157150800 5599201 complement(1738503..1739204) 1 NC_009785.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 1739204 scpA 5599201 scpA Streptococcus gordonii str. Challis substr. CH1 segregation and condensation protein A YP_001450948.1 1738503 R 467705 CDS YP_001450949.1 157151140 5598569 complement(1739204..1739932) 1 NC_009785.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1739932 xerD 5598569 xerD Streptococcus gordonii str. Challis substr. CH1 site-specific tyrosine recombinase XerD YP_001450949.1 1739204 R 467705 CDS YP_001450950.1 157150681 5597878 complement(1739929..1740390) 1 NC_009785.1 identified by match to protein family HMM PF00571; hypothetical protein 1740390 5597878 SGO_1673 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450950.1 1739929 R 467705 CDS YP_001450951.1 157149968 5598787 complement(1740387..1740908) 1 NC_009785.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 1740908 5598787 SGO_1674 Streptococcus gordonii str. Challis substr. CH1 phosphodiesterase YP_001450951.1 1740387 R 467705 CDS YP_001450952.1 157151350 5598004 complement(1740884..1741861) 1 NC_009785.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein 1741861 5598004 SGO_1675 Streptococcus gordonii str. Challis substr. CH1 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein YP_001450952.1 1740884 R 467705 CDS YP_001450953.1 157151279 5599397 complement(1741858..1742652) 1 NC_009785.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1742652 murI 5599397 murI Streptococcus gordonii str. Challis substr. CH1 glutamate racemase YP_001450953.1 1741858 R 467705 CDS YP_001450954.1 157150754 5599567 complement(1742724..1742972) 1 NC_009785.1 identified by match to protein family HMM PF03672; hypothetical protein 1742972 5599567 SGO_1677 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450954.1 1742724 R 467705 CDS YP_001450955.1 157150578 5598648 complement(1743027..1744277) 1 NC_009785.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 1744277 lysA 5598648 lysA Streptococcus gordonii str. Challis substr. CH1 diaminopimelate decarboxylase YP_001450955.1 1743027 R 467705 CDS YP_001450956.1 157151038 5598957 1744606..1745595 1 NC_009785.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; phosphotransferase system enzyme II 1745595 5598957 SGO_1679 Streptococcus gordonii str. Challis substr. CH1 phosphotransferase system enzyme II YP_001450956.1 1744606 D 467705 CDS YP_001450957.1 157150304 5598072 1745714..1746517 1 NC_009785.1 identified by match to protein family HMM PF03609; phosphotransferase system enzyme II 1746517 5598072 SGO_1680 Streptococcus gordonii str. Challis substr. CH1 phosphotransferase system enzyme II YP_001450957.1 1745714 D 467705 CDS YP_001450958.1 157150100 5599467 1746535..1747446 1 NC_009785.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system mannose/fructose/sorbose family transporter subunit IID 1747446 5599467 SGO_1681 Streptococcus gordonii str. Challis substr. CH1 PTS system mannose/fructose/sorbose family transporter subunit IID YP_001450958.1 1746535 D 467705 CDS YP_001450959.1 157149767 5597775 1747518..1747892 1 NC_009785.1 identified by match to protein family HMM PF06115; hypothetical protein 1747892 5597775 SGO_1682 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450959.1 1747518 D 467705 CDS YP_001450960.1 157151414 5599821 1748104..1749381 1 NC_009785.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1749381 serS 5599821 serS Streptococcus gordonii str. Challis substr. CH1 seryl-tRNA synthetase YP_001450960.1 1748104 D 467705 CDS YP_001450961.1 157150850 5598133 complement(1749863..1750927) 1 NC_009785.1 acyl-CoA dehydrogenase 1750927 5598133 SGO_1684 Streptococcus gordonii str. Challis substr. CH1 acyl-CoA dehydrogenase YP_001450961.1 1749863 R 467705 CDS YP_001450962.1 157150539 5598460 complement(1750946..1751494) 1 NC_009785.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; putative peroxidase / antioxidase 1751494 5598460 SGO_1685 Streptococcus gordonii str. Challis substr. CH1 putative peroxidase / antioxidase YP_001450962.1 1750946 R 467705 CDS YP_001450963.1 157149831 5599035 complement(1751739..1752395) 1 NC_009785.1 hypothetical protein 1752395 5599035 SGO_1686 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450963.1 1751739 R 467705 CDS YP_001450964.1 157151444 5598175 complement(1752569..1753339) 1 NC_009785.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus; acetyl-CoA carboxylase subunit alpha 1753339 accA 5598175 accA Streptococcus gordonii str. Challis substr. CH1 acetyl-CoA carboxylase subunit alpha YP_001450964.1 1752569 R 467705 CDS YP_001450965.1 157150723 5598677 complement(1753336..1754199) 1 NC_009785.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1754199 accD 5598677 accD Streptococcus gordonii str. Challis substr. CH1 acetyl-CoA carboxylase subunit beta YP_001450965.1 1753336 R 467705 CDS YP_001450966.1 157150200 5598702 complement(1754267..1755646) 1 NC_009785.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1755646 accC 5598702 accC Streptococcus gordonii str. Challis substr. CH1 acetyl-CoA carboxylase biotin carboxylase subunit YP_001450966.1 1754267 R 467705 CDS YP_001450967.1 157149797 5598157 complement(1755664..1756086) 1 NC_009785.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1756086 fabZ 5598157 fabZ Streptococcus gordonii str. Challis substr. CH1 (3R)-hydroxymyristoyl-ACP dehydratase YP_001450967.1 1755664 R 467705 CDS YP_001450968.1 157151634 5599824 complement(1756083..1756571) 1 NC_009785.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 1756571 accB 5599824 accB Streptococcus gordonii str. Challis substr. CH1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001450968.1 1756083 R 467705 CDS YP_001450969.1 157150710 5598775 complement(1756578..1757810) 1 NC_009785.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1757810 5598775 SGO_1692 Streptococcus gordonii str. Challis substr. CH1 3-oxoacyl-(acyl carrier protein) synthase II YP_001450969.1 1756578 R 467705 CDS YP_001450970.1 157150442 5598721 complement(1757900..1758634) 1 NC_009785.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1758634 fabG 5598721 fabG Streptococcus gordonii str. Challis substr. CH1 3-ketoacyl-ACP reductase YP_001450970.1 1757900 R 467705 CDS YP_001450971.1 157150117 5599222 complement(1758644..1759564) 1 NC_009785.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1759564 fabD 5599222 fabD Streptococcus gordonii str. Challis substr. CH1 malonyl CoA-acyl carrier protein transacylase YP_001450971.1 1758644 R 467705 CDS YP_001450972.1 157149786 5599689 complement(1759557..1760531) 1 NC_009785.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; enoyl-acyl carrier protein(ACP) reductase 1760531 5599689 SGO_1695 Streptococcus gordonii str. Challis substr. CH1 enoyl-acyl carrier protein(ACP) reductase YP_001450972.1 1759557 R 467705 CDS YP_001450973.1 157150419 5599620 1760239..1760835 1 NC_009785.1 hypothetical protein 1760835 5599620 SGO_1696 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450973.1 1760239 D 467705 CDS YP_001450974.1 157150646 5599257 complement(1760821..1761045) 1 NC_009785.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1761045 acpP 5599257 acpP Streptococcus gordonii str. Challis substr. CH1 acyl carrier protein YP_001450974.1 1760821 R 467705 CDS YP_001450975.1 157151320 5598845 complement(1761101..1762075) 1 NC_009785.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1762075 5598845 SGO_1698 Streptococcus gordonii str. Challis substr. CH1 3-oxoacyl-ACP synthase YP_001450975.1 1761101 R 467705 CDS YP_001450976.1 157151202 5599217 complement(1762075..1762437) 1 NC_009785.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1762437 5599217 SGO_1699 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001450976.1 1762075 R 467705 CDS YP_001450977.1 157150472 5597771 complement(1762648..1763439) 1 NC_009785.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1763439 5597771 SGO_1700 Streptococcus gordonii str. Challis substr. CH1 enoyl-CoA hydratase YP_001450977.1 1762648 R 467705 CDS YP_001450978.1 157150184 5599165 1763691..1765061 1 NC_009785.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1765061 5599165 SGO_1701 Streptococcus gordonii str. Challis substr. CH1 aspartate kinase YP_001450978.1 1763691 D 467705 CDS YP_001450979.1 157151646 5599838 complement(1770396..1770878) 1 NC_009785.1 competence specific sigma factor ComR1 1770878 comR1 5599838 comR1 Streptococcus gordonii str. Challis substr. CH1 competence specific sigma factor ComR1 YP_001450979.1 1770396 R 467705 CDS YP_001450980.1 157150946 5599547 complement(1771080..1772003) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport ATP-binding protein amiF 1772003 amiF 5599547 amiF Streptococcus gordonii str. Challis substr. CH1 oligopeptide transport ATP-binding protein amiF YP_001450980.1 1771080 R 467705 CDS YP_001450981.1 157150178 5598287 complement(1772014..1773081) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein 1773081 amiE 5598287 amiE Streptococcus gordonii str. Challis substr. CH1 oligopeptide transport ATP-binding protein YP_001450981.1 1772014 R 467705 CDS YP_001450982.1 157150007 5598920 complement(1773090..1774016) 1 NC_009785.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease 1774016 amiD 5598920 amiD Streptococcus gordonii str. Challis substr. CH1 oligopeptide transport system permease YP_001450982.1 1773090 R 467705 CDS YP_001450983.1 157151117 5598076 complement(1774016..1775512) 1 NC_009785.1 identified by match to protein family HMM PF00528; oligopeptide transport system permease 1775512 hppB 5598076 hppB Streptococcus gordonii str. Challis substr. CH1 oligopeptide transport system permease YP_001450983.1 1774016 R 467705 CDS YP_001450984.1 157151405 5597917 complement(1775577..1777568) 1 NC_009785.1 identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein 1777568 hppA 5597917 hppA Streptococcus gordonii str. Challis substr. CH1 oligopeptide-binding lipoprotein YP_001450984.1 1775577 R 467705 CDS YP_001450985.1 157150139 5598383 complement(1777848..1779830) 1 NC_009785.1 identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein 1779830 hppG 5598383 hppG Streptococcus gordonii str. Challis substr. CH1 oligopeptide-binding lipoprotein YP_001450985.1 1777848 R 467705 CDS YP_001450986.1 157150626 5599098 1779733..1779852 1 NC_009785.1 hypothetical protein 1779852 5599098 SGO_1714 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450986.1 1779733 D 467705 CDS YP_001450987.1 157151652 5598873 complement(1780081..1782039) 1 NC_009785.1 identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein 1782039 hppH 5598873 hppH Streptococcus gordonii str. Challis substr. CH1 oligopeptide-binding lipoprotein YP_001450987.1 1780081 R 467705 CDS YP_001450988.1 157151126 5598508 complement(1782256..1784217) 1 NC_009785.1 identified by match to protein family HMM PF00496; oligopeptide binding protein 1784217 5598508 SGO_1716 Streptococcus gordonii str. Challis substr. CH1 oligopeptide binding protein YP_001450988.1 1782256 R 467705 CDS YP_001450989.1 157150235 5597907 1784507..1785745 1 NC_009785.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943; penicillin-binding protein 3 1785745 pbp3 5597907 pbp3 Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 3 YP_001450989.1 1784507 D 467705 CDS YP_001450990.1 157149700 5599723 complement(1785953..1787365) 1 NC_009785.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 1787365 sufB-1 5599723 sufB-1 Streptococcus gordonii str. Challis substr. CH1 FeS assembly protein SufB YP_001450990.1 1785953 R 467705 CDS YP_001450991.1 157151420 5598071 complement(1787383..1787820) 1 NC_009785.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein 1787820 5598071 SGO_1719 Streptococcus gordonii str. Challis substr. CH1 NifU family SUF system FeS assembly protein YP_001450991.1 1787383 R 467705 CDS YP_001450992.1 157150923 5598288 complement(1787807..1789039) 1 NC_009785.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; class-V aminotransferase 1789039 5598288 SGO_1720 Streptococcus gordonii str. Challis substr. CH1 class-V aminotransferase YP_001450992.1 1787807 R 467705 CDS YP_001450993.1 157151539 5598326 complement(1789079..1790341) 1 NC_009785.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 1790341 sufD 5598326 sufD Streptococcus gordonii str. Challis substr. CH1 FeS assembly protein SufD YP_001450993.1 1789079 R 467705 CDS YP_001450994.1 157150929 5599351 complement(1790383..1791153) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 1791153 sufC 5599351 sufC Streptococcus gordonii str. Challis substr. CH1 FeS assembly ATPase SufC YP_001450994.1 1790383 R 467705 CDS YP_001450995.1 157150246 5598315 complement(1791240..1792400) 1 NC_009785.1 identified by match to protein family HMM PF00953; RgpG 1792400 5598315 SGO_1723 Streptococcus gordonii str. Challis substr. CH1 RgpG YP_001450995.1 1791240 R 467705 CDS YP_001450996.1 157149673 5599724 complement(1792400..1793128) 1 NC_009785.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 1793128 mecA 5599724 mecA Streptococcus gordonii str. Challis substr. CH1 adaptor protein YP_001450996.1 1792400 R 467705 CDS YP_001450997.1 157151436 5598405 complement(1793250..1794098) 1 NC_009785.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1794098 bacA 5598405 bacA Streptococcus gordonii str. Challis substr. CH1 undecaprenyl pyrophosphate phosphatase YP_001450997.1 1793250 R 467705 CDS YP_001450998.1 157151037 5598480 complement(1794187..1796106) 1 NC_009785.1 hypothetical protein 1796106 5598480 SGO_1726 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001450998.1 1794187 R 467705 CDS YP_001450999.1 157150410 5598073 1796391..1797956 1 NC_009785.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid-binding permease 1797956 5598073 SGO_1727 Streptococcus gordonii str. Challis substr. CH1 amino acid-binding permease YP_001450999.1 1796391 D 467705 CDS YP_001451000.1 157150083 5599278 1797953..1798693 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; glutamine ABC transporter ATP-binding protein 1798693 glnQ 5599278 glnQ Streptococcus gordonii str. Challis substr. CH1 glutamine ABC transporter ATP-binding protein YP_001451000.1 1797953 D 467705 CDS YP_001451001.1 157151549 5598063 complement(1798975..1799193) 1 NC_009785.1 hypothetical protein 1799193 5598063 SGO_1729 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451001.1 1798975 R 467705 CDS YP_001451002.1 157150462 5599269 complement(1799309..1800196) 1 NC_009785.1 identified by match to protein family HMM PF01145; hypothetical protein 1800196 5599269 SGO_1730 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451002.1 1799309 R 467705 CDS YP_001451003.1 157151124 5599181 complement(1800542..1801141) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; DNA-binding response regulator 1801141 5599181 SGO_1731 Streptococcus gordonii str. Challis substr. CH1 DNA-binding response regulator YP_001451003.1 1800542 R 467705 CDS YP_001451004.1 157149751 5597910 complement(1801138..1802238) 1 NC_009785.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase 1802238 5597910 SGO_1732 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001451004.1 1801138 R 467705 CDS YP_001451005.1 157150205 5599867 complement(1802243..1802977) 1 NC_009785.1 identified by match to protein family HMM PF01061; hypothetical protein 1802977 5599867 SGO_1733 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451005.1 1802243 R 467705 CDS YP_001451006.1 157151015 5598081 complement(1802988..1803863) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1803863 5598081 SGO_1734 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451006.1 1802988 R 467705 CDS YP_001451007.1 157149792 5598124 complement(1804106..1805770) 1 NC_009785.1 identified by match to protein family HMM PF02734; hypothetical protein 1805770 5598124 SGO_1735 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451007.1 1804106 R 467705 CDS YP_001451008.1 157150402 5599627 complement(1805773..1806138) 1 NC_009785.1 identified by match to protein family HMM PF03780; alkaline shock protein 1806138 5599627 SGO_1736 Streptococcus gordonii str. Challis substr. CH1 alkaline shock protein YP_001451008.1 1805773 R 467705 CDS YP_001451009.1 157150697 5599299 complement(1806313..1806501) 1 NC_009785.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1806501 rpmB 5599299 rpmB Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L28 YP_001451009.1 1806313 R 467705 CDS YP_001451010.1 157150928 5598752 complement(1806628..1807296) 1 NC_009785.1 hypothetical protein 1807296 5598752 SGO_1738 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451010.1 1806628 R 467705 CDS YP_001451011.1 157151357 5598316 complement(1807302..1807748) 1 NC_009785.1 identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein 1807748 5598316 SGO_1739 Streptococcus gordonii str. Challis substr. CH1 LytTr DNA-binding domain-containing protein YP_001451011.1 1807302 R 467705 CDS YP_001451012.1 157151254 5597750 1808021..1808284 1 NC_009785.1 integral membrane protein 1808284 5597750 SGO_1740 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001451012.1 1808021 D 467705 CDS YP_001451013.1 157149733 5599530 complement(1808514..1809299) 1 NC_009785.1 identified by match to protein family HMM PF06182; hypothetical protein 1809299 5599530 SGO_1742 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451013.1 1808514 R 467705 CDS YP_001451014.1 157151314 5599305 complement(1809301..1810119) 1 NC_009785.1 identified by match to protein family HMM PF06182; membrane protein 1810119 5599305 SGO_1743 Streptococcus gordonii str. Challis substr. CH1 membrane protein YP_001451014.1 1809301 R 467705 CDS YP_001451015.1 157150051 5599361 complement(1810121..1811113) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter; ATP-binding transport protein 1811113 5599361 SGO_1744 Streptococcus gordonii str. Challis substr. CH1 ATP-binding transport protein YP_001451015.1 1810121 R 467705 CDS YP_001451016.1 157151559 5598747 complement(1811399..1812280) 1 NC_009785.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1812280 fba 5598747 fba Streptococcus gordonii str. Challis substr. CH1 fructose-bisphosphate aldolase YP_001451016.1 1811399 R 467705 CDS YP_001451017.1 157150953 5599216 complement(1812720..1813130) 1 NC_009785.1 hypothetical protein 1813130 5599216 SGO_1747 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451017.1 1812720 R 467705 CDS YP_001451018.1 157150403 5598271 complement(1813200..1814813) 1 NC_009785.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1814813 pyrG 5598271 pyrG Streptococcus gordonii str. Challis substr. CH1 CTP synthetase YP_001451018.1 1813200 R 467705 CDS YP_001451019.1 157149838 5599298 complement(1815253..1816197) 1 NC_009785.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1816197 manA 5599298 manA Streptococcus gordonii str. Challis substr. CH1 mannose-6-phosphate isomerase YP_001451019.1 1815253 R 467705 CDS YP_001451020.1 157150339 5599493 complement(1816361..1818118) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC-type multidrug/protein/lipid transport system, ATPase component 1818118 5599493 SGO_1750 Streptococcus gordonii str. Challis substr. CH1 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001451020.1 1816361 R 467705 CDS YP_001451021.1 157150081 5599411 complement(1818108..1819874) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC-type multidrug/protein/lipid transport system, ATPase component 1819874 5599411 SGO_1751 Streptococcus gordonii str. Challis substr. CH1 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001451021.1 1818108 R 467705 CDS YP_001451022.1 157151621 5598012 complement(1819867..1820325) 1 NC_009785.1 MarR family transcriptional regulator 1820325 5598012 SGO_1752 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001451022.1 1819867 R 467705 CDS YP_001451023.1 157151061 5598155 complement(1820597..1821166) 1 NC_009785.1 hypothetical protein 1821166 5598155 SGO_1753 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451023.1 1820597 R 467705 CDS YP_001451024.1 157150232 5598029 complement(1821176..1821586) 1 NC_009785.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1821586 5598029 SGO_1754 Streptococcus gordonii str. Challis substr. CH1 peptide deformylase YP_001451024.1 1821176 R 467705 CDS YP_001451025.1 157149655 5599698 complement(1821635..1822534) 1 NC_009785.1 identified by match to protein family HMM PF00480; fructokinase 1822534 scrK 5599698 scrK Streptococcus gordonii str. Challis substr. CH1 fructokinase YP_001451025.1 1821635 R 467705 CDS YP_001451026.1 157151399 5598613 complement(1822775..1823299) 1 NC_009785.1 hypothetical protein 1823299 5598613 SGO_1756 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451026.1 1822775 R 467705 CDS YP_001451027.1 157150557 5598348 complement(1823564..1825375) 1 NC_009785.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1825375 glmS 5598348 glmS Streptococcus gordonii str. Challis substr. CH1 glucosamine--fructose-6-phosphate aminotransferase YP_001451027.1 1823564 R 467705 CDS YP_001451028.1 157150524 5599004 complement(1825700..1826623) 1 NC_009785.1 identified by match to protein family HMM PF01381; putative transcriptional regulator 1826623 5599004 SGO_1758 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001451028.1 1825700 R 467705 CDS YP_001451029.1 157149935 5599064 complement(1826727..1828112) 1 NC_009785.1 identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 1828112 5599064 SGO_1759 Streptococcus gordonii str. Challis substr. CH1 6-phospho-beta-glucosidase YP_001451029.1 1826727 R 467705 CDS YP_001451030.1 157151445 5599578 complement(1828246..1829529) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165; DNA-binding response regulator 1829529 5599578 SGO_1760 Streptococcus gordonii str. Challis substr. CH1 DNA-binding response regulator YP_001451030.1 1828246 R 467705 CDS YP_001451031.1 157150465 5598686 complement(1829539..1831131) 1 NC_009785.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; histidine kinase 1831131 5598686 SGO_1761 Streptococcus gordonii str. Challis substr. CH1 histidine kinase YP_001451031.1 1829539 R 467705 CDS YP_001451032.1 157150762 5599178 complement(1831170..1831784) 1 NC_009785.1 identified by match to protein family HMM PF04854; hypothetical protein 1831784 5599178 SGO_1762 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451032.1 1831170 R 467705 CDS YP_001451033.1 157150174 5598633 complement(1831937..1833397) 1 NC_009785.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein SP0092 1833397 5598633 SGO_1763 Streptococcus gordonii str. Challis substr. CH1 ABC transporter substrate-binding protein SP0092 YP_001451033.1 1831937 R 467705 CDS YP_001451034.1 157149955 5598992 complement(1833509..1834444) 1 NC_009785.1 identified by match to protein family HMM PF00528; permease 1834444 5598992 SGO_1764 Streptococcus gordonii str. Challis substr. CH1 permease YP_001451034.1 1833509 R 467705 CDS YP_001451035.1 157151604 5599562 complement(1834458..1835393) 1 NC_009785.1 identified by match to protein family HMM PF00528; ABC transporter sugar binding protein 1835393 5599562 SGO_1765 Streptococcus gordonii str. Challis substr. CH1 ABC transporter sugar binding protein YP_001451035.1 1834458 R 467705 CDS YP_001451036.1 157151506 5598293 complement(1835562..1837445) 1 NC_009785.1 identified by match to protein family HMM PF00728; glycosyl hydrolase family 20 protein 1837445 5598293 SGO_1766 Streptococcus gordonii str. Challis substr. CH1 glycosyl hydrolase family 20 protein YP_001451036.1 1835562 R 467705 CDS YP_001451037.1 157150997 5599121 complement(1837430..1838308) 1 NC_009785.1 identified by match to protein family HMM PF00480; ROK family protein 1838308 5599121 SGO_1767 Streptococcus gordonii str. Challis substr. CH1 ROK family protein YP_001451037.1 1837430 R 467705 CDS YP_001451038.1 157149905 5598174 complement(1838376..1841009) 1 NC_009785.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748; glycosyl hydrolase family protein 1841009 5598174 SGO_1768 Streptococcus gordonii str. Challis substr. CH1 glycosyl hydrolase family protein YP_001451038.1 1838376 R 467705 CDS YP_001451039.1 157151285 5599522 complement(1841033..1842322) 1 NC_009785.1 identified by match to protein family HMM PF06824; hypothetical protein 1842322 5599522 SGO_1769 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451039.1 1841033 R 467705 CDS YP_001451040.1 157150661 5599132 1842492..1844585 1 NC_009785.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180; glycosyl hydrolase 1844585 5599132 SGO_1770 Streptococcus gordonii str. Challis substr. CH1 glycosyl hydrolase YP_001451040.1 1842492 D 467705 CDS YP_001451041.1 157149844 5598823 complement(1844620..1846320) 1 NC_009785.1 identified by match to protein family HMM PF00754; hypothetical protein 1846320 5598823 SGO_1771 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451041.1 1844620 R 467705 CDS YP_001451042.1 157150132 5599552 complement(1846494..1847183) 1 NC_009785.1 identified by match to protein family HMM PF01988; integral membrane protein 1847183 5599552 SGO_1772 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001451042.1 1846494 R 467705 CDS YP_001451043.1 157149975 5599874 complement(1848467..1849504) 1 NC_009785.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-containing alcohol dehydrogenase 1849504 5599874 SGO_1774 Streptococcus gordonii str. Challis substr. CH1 zinc-containing alcohol dehydrogenase YP_001451043.1 1848467 R 467705 CDS YP_001451044.1 157150732 5597938 complement(1849787..1850419) 1 NC_009785.1 hypothetical protein 1850419 5597938 SGO_1775 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451044.1 1849787 R 467705 CDS YP_001451045.1 157150396 5598688 complement(1850416..1851030) 1 NC_009785.1 hypothetical protein 1851030 5598688 SGO_1776 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451045.1 1850416 R 467705 CDS YP_001451046.1 157150601 5599313 complement(1851027..1851659) 1 NC_009785.1 hypothetical protein 1851659 5599313 SGO_1777 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451046.1 1851027 R 467705 CDS YP_001451047.1 157150150 5598926 complement(1851656..1852288) 1 NC_009785.1 hypothetical protein 1852288 5598926 SGO_1778 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451047.1 1851656 R 467705 CDS YP_001451048.1 157151433 5597780 complement(1852285..1852893) 1 NC_009785.1 hypothetical protein 1852893 5597780 SGO_1779 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451048.1 1852285 R 467705 CDS YP_001451049.1 157149769 5598581 complement(1852890..1853501) 1 NC_009785.1 hypothetical protein 1853501 5598581 SGO_1780 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451049.1 1852890 R 467705 CDS YP_001451050.1 157149827 5599523 complement(1853516..1855012) 1 NC_009785.1 hypothetical protein 1855012 5599523 SGO_1781 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451050.1 1853516 R 467705 CDS YP_001451051.1 157151316 5597857 complement(1855114..1855473) 1 NC_009785.1 cingulin 1855473 5597857 SGO_1782 Streptococcus gordonii str. Challis substr. CH1 cingulin YP_001451051.1 1855114 R 467705 CDS YP_001451052.1 157150725 5599253 complement(1855475..1855747) 1 NC_009785.1 hypothetical protein 1855747 5599253 SGO_1783 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451052.1 1855475 R 467705 CDS YP_001451053.1 157150214 5598700 complement(1855920..1858421) 1 NC_009785.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1858421 leuS 5598700 leuS Streptococcus gordonii str. Challis substr. CH1 leucyl-tRNA synthetase YP_001451053.1 1855920 R 467705 CDS YP_001451054.1 157151636 5599792 1858586..1859149 1 NC_009785.1 identified by match to protein family HMM PF04140; nickel-cobalt-cadmium resistance protein; NccN 1859149 5599792 SGO_1785 Streptococcus gordonii str. Challis substr. CH1 nickel-cobalt-cadmium resistance protein; NccN YP_001451054.1 1858586 D 467705 CDS YP_001451055.1 157151205 5598938 complement(1859217..1860311) 1 NC_009785.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1860311 gldA 5598938 gldA Streptococcus gordonii str. Challis substr. CH1 glycerol dehydrogenase YP_001451055.1 1859217 R 467705 CDS YP_001451056.1 157150466 5597767 complement(1860357..1861025) 1 NC_009785.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 1861025 5597767 SGO_1787 Streptococcus gordonii str. Challis substr. CH1 fructose-6-phosphate aldolase YP_001451056.1 1860357 R 467705 CDS YP_001451057.1 157150032 5599177 complement(1861040..1863481) 1 NC_009785.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 1863481 5599177 SGO_1788 Streptococcus gordonii str. Challis substr. CH1 pyruvate formate-lyase YP_001451057.1 1861040 R 467705 CDS YP_001451058.1 157150240 5599646 complement(1863644..1864945) 1 NC_009785.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system lactose/cellobiose family transporter subunit IIC 1864945 5599646 SGO_1789 Streptococcus gordonii str. Challis substr. CH1 PTS system lactose/cellobiose family transporter subunit IIC YP_001451058.1 1863644 R 467705 CDS YP_001451059.1 157149915 5599793 complement(1864948..1865277) 1 NC_009785.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose specific transporter subunit IIB 1865277 5599793 SGO_1790 Streptococcus gordonii str. Challis substr. CH1 PTS system lactose/cellobiose specific transporter subunit IIB YP_001451059.1 1864948 R 467705 CDS YP_001451060.1 157150347 5599665 complement(1865295..1865618) 1 NC_009785.1 identified by match to protein family HMM PF02255; PTS system lactose/cellobiose specific transporter subunit IIA 1865618 5599665 SGO_1791 Streptococcus gordonii str. Challis substr. CH1 PTS system lactose/cellobiose specific transporter subunit IIA YP_001451060.1 1865295 R 467705 CDS YP_001451061.1 157150796 5599401 complement(1865842..1866807) 1 NC_009785.1 identified by match to protein family HMM PF04198; transcriptional regulator 1866807 5599401 SGO_1792 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451061.1 1865842 R 467705 CDS YP_001451062.1 157150468 5598577 complement(1866825..1867574) 1 NC_009785.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1867574 5598577 SGO_1793 Streptococcus gordonii str. Challis substr. CH1 DeoR family transcriptional regulator YP_001451062.1 1866825 R 467705 CDS YP_001451063.1 157151170 5599175 1867693..1868469 1 NC_009785.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; formate acetyltransferase activating enzyme 1868469 pflC 5599175 pflC Streptococcus gordonii str. Challis substr. CH1 formate acetyltransferase activating enzyme YP_001451063.1 1867693 D 467705 CDS YP_001451064.1 157149876 5597832 1868776..1869474 1 NC_009785.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; potassium channel family protein 1869474 5597832 SGO_1795 Streptococcus gordonii str. Challis substr. CH1 potassium channel family protein YP_001451064.1 1868776 D 467705 CDS YP_001451065.1 157150225 5598820 complement(1869549..1870427) 1 NC_009785.1 ABC transporter-like protein CylB 1870427 5598820 SGO_1796 Streptococcus gordonii str. Challis substr. CH1 ABC transporter-like protein CylB YP_001451065.1 1869549 R 467705 CDS YP_001451066.1 157150811 5599616 complement(1870420..1871349) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter-like protein CylA 1871349 drra 5599616 drra Streptococcus gordonii str. Challis substr. CH1 ABC transporter-like protein CylA YP_001451066.1 1870420 R 467705 CDS YP_001451067.1 157151643 5598540 complement(1871493..1872410) 1 NC_009785.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 1872410 5598540 SGO_1798 Streptococcus gordonii str. Challis substr. CH1 Cro/CI family transcriptional regulator YP_001451067.1 1871493 R 467705 CDS YP_001451068.1 157150161 5598355 complement(1872559..1874451) 1 NC_009785.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649; endopeptidase O 1874451 5598355 SGO_1799 Streptococcus gordonii str. Challis substr. CH1 endopeptidase O YP_001451068.1 1872559 R 467705 CDS YP_001451069.1 157149705 5599503 1874599..1875318 1 NC_009785.1 ATP-binding; identified by match to protein family HMM PF00005; manganese transport protein SP1648 1875318 troB 5599503 troB Streptococcus gordonii str. Challis substr. CH1 manganese transport protein SP1648 YP_001451069.1 1874599 D 467705 CDS YP_001451070.1 157150856 5599154 1875320..1876156 1 NC_009785.1 identified by match to protein family HMM PF00950; ABC transporter membrane-spanning permease - manganese transport 1876156 scaA 5599154 scaA Streptococcus gordonii str. Challis substr. CH1 ABC transporter membrane-spanning permease - manganese transport YP_001451070.1 1875320 D 467705 CDS YP_001451071.1 157151338 5598451 1876183..1877115 1 NC_009785.1 identified by match to protein family HMM PF01297; metal ABC transporter substrate-binding lipoprotein 1877115 5598451 SGO_1802 Streptococcus gordonii str. Challis substr. CH1 metal ABC transporter substrate-binding lipoprotein YP_001451071.1 1876183 D 467705 CDS YP_001451072.1 157149716 5599297 1877267..1877758 1 NC_009785.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1877758 tpx 5599297 tpx Streptococcus gordonii str. Challis substr. CH1 thiol peroxidase YP_001451072.1 1877267 D 467705 CDS YP_001451073.1 157150292 5599603 complement(1877960..1879225) 1 NC_009785.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 1879225 hutI 5599603 hutI Streptococcus gordonii str. Challis substr. CH1 imidazolonepropionase YP_001451073.1 1877960 R 467705 CDS YP_001451074.1 157151160 5599481 1879430..1881460 1 NC_009785.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1881460 hutU 5599481 hutU Streptococcus gordonii str. Challis substr. CH1 urocanate hydratase YP_001451074.1 1879430 D 467705 CDS YP_001451075.1 157151625 5597848 1881576..1882475 1 NC_009785.1 identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024; glutamate formiminotransferase 1882475 ftcD 5597848 ftcD Streptococcus gordonii str. Challis substr. CH1 glutamate formiminotransferase YP_001451075.1 1881576 D 467705 CDS YP_001451076.1 157150031 5599649 1882490..1883116 1 NC_009785.1 identified by match to protein family HMM PF04961; hypothetical protein 1883116 5599649 SGO_1807 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451076.1 1882490 D 467705 CDS YP_001451077.1 157150488 5598466 1883183..1884856 1 NC_009785.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1884856 fhs-2 5598466 fhs-2 Streptococcus gordonii str. Challis substr. CH1 formate--tetrahydrofolate ligase YP_001451077.1 1883183 D 467705 CDS YP_001451078.1 157150019 5599134 1884869..1885468 1 NC_009785.1 identified by match to protein family HMM PF05962; hypothetical protein 1885468 5599134 SGO_1809 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451078.1 1884869 D 467705 CDS YP_001451079.1 157150128 5597794 1885556..1886890 1 NC_009785.1 identified by match to protein family HMM PF00324; cationic amino acid transporter 1886890 5597794 SGO_1810 Streptococcus gordonii str. Challis substr. CH1 cationic amino acid transporter YP_001451079.1 1885556 D 467705 CDS YP_001451080.1 157150715 5598052 1886907..1888448 1 NC_009785.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1888448 hutH 5598052 hutH Streptococcus gordonii str. Challis substr. CH1 histidine ammonia-lyase YP_001451080.1 1886907 D 467705 CDS YP_001451081.1 157151001 5598714 complement(1888608..1888745) 1 NC_009785.1 hypothetical protein 1888745 5598714 SGO_1812 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451081.1 1888608 R 467705 CDS YP_001451082.1 157151630 5598165 1889355..1890344 1 NC_009785.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 1890344 hutG 5598165 hutG Streptococcus gordonii str. Challis substr. CH1 formimidoylglutamase YP_001451082.1 1889355 D 467705 CDS YP_001451083.1 157149734 5597968 complement(1890409..1893450) 1 NC_009785.1 identified by match to protein family HMM PF03704; match to protein family HMM PF07719; putative regulatory protein 1893450 5597968 SGO_1814 Streptococcus gordonii str. Challis substr. CH1 putative regulatory protein YP_001451083.1 1890409 R 467705 CDS YP_001451084.1 157151179 5598514 complement(1893685..1894749) 1 NC_009785.1 hypothetical protein 1894749 5598514 SGO_1815 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451084.1 1893685 R 467705 CDS YP_001451085.1 157150924 5597814 1894941..1895588 1 NC_009785.1 identified by similarity to GB:AAF25184.1; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; ScaR manganese-dependent regulator of scaCBA 1895588 scaR 5597814 scaR Streptococcus gordonii str. Challis substr. CH1 ScaR manganese-dependent regulator of scaCBA YP_001451085.1 1894941 D 467705 CDS YP_001451086.1 157151366 5598321 1895679..1896140 1 NC_009785.1 identified by similarity to GB:AAF25185.1; match to protein family HMM PF01047; MarR family transcriptional regulator 1896140 5598321 SGO_1817 Streptococcus gordonii str. Challis substr. CH1 MarR family transcriptional regulator YP_001451086.1 1895679 D 467705 CDS YP_001451087.1 157150433 5597947 1896133..1896558 1 NC_009785.1 identified by match to protein family HMM PF01878; hypothetical protein 1896558 5597947 SGO_1818 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451087.1 1896133 D 467705 CDS YP_001451088.1 157150903 5599234 complement(1896679..1897296) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino protease 1897296 5599234 SGO_1819 Streptococcus gordonii str. Challis substr. CH1 CAAX amino protease YP_001451088.1 1896679 R 467705 CDS YP_001451089.1 157151081 5598365 1897493..1898290 1 NC_009785.1 hypothetical protein 1898290 5598365 SGO_1820 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451089.1 1897493 D 467705 CDS YP_001451090.1 157149849 5597984 complement(1898373..1898828) 1 NC_009785.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1898828 dtd 5597984 dtd Streptococcus gordonii str. Challis substr. CH1 D-tyrosyl-tRNA(Tyr) deacylase YP_001451090.1 1898373 R 467705 CDS YP_001451091.1 157150146 5599580 complement(1898897..1901113) 1 NC_009785.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP diphosphokinase 1901113 relA 5599580 relA Streptococcus gordonii str. Challis substr. CH1 GTP diphosphokinase YP_001451091.1 1898897 R 467705 CDS YP_001451092.1 157150621 5598496 complement(1901256..1901999) 1 NC_009785.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1901999 5598496 SGO_1823 Streptococcus gordonii str. Challis substr. CH1 16S ribosomal RNA methyltransferase RsmE YP_001451092.1 1901256 R 467705 CDS YP_001451093.1 157151259 5598884 complement(1902000..1902956) 1 NC_009785.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1902956 prmA 5598884 prmA Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L11 methyltransferase YP_001451093.1 1902000 R 467705 CDS YP_001451094.1 157150133 5599399 complement(1903096..1903566) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1903566 5599399 SGO_1825 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001451094.1 1903096 R 467705 CDS YP_001451095.1 157150317 5598571 complement(1903563..1904018) 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 1904018 mutT 5598571 mutT Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001451095.1 1903563 R 467705 CDS YP_001451096.1 157150797 5599444 complement(1904028..1904498) 1 NC_009785.1 hypothetical protein 1904498 5599444 SGO_1827 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451096.1 1904028 R 467705 CDS YP_001451097.1 157151477 5598576 1904586..1905854 1 NC_009785.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1905854 5598576 SGO_1828 Streptococcus gordonii str. Challis substr. CH1 recombination factor protein RarA YP_001451097.1 1904586 D 467705 CDS YP_001451098.1 157150373 5599871 complement(1906323..1907804) 1 NC_009785.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280; Mga-like regulatory protein 1907804 mga 5599871 mga Streptococcus gordonii str. Challis substr. CH1 Mga-like regulatory protein YP_001451098.1 1906323 R 467705 CDS YP_001451099.1 157151391 5599356 1908101..1908340 1 NC_009785.1 identified by match to protein family HMM PF04226; integral membrane protein 1908340 5599356 SGO_1831 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001451099.1 1908101 D 467705 CDS YP_001451100.1 157150859 5598275 1908396..1908977 1 NC_009785.1 hypothetical protein 1908977 5598275 SGO_1832 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451100.1 1908396 D 467705 CDS YP_001451101.1 157150534 5598447 1908989..1909159 1 NC_009785.1 putative lipoprotein 1909159 5598447 SGO_1833 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451101.1 1908989 D 467705 CDS YP_001451102.1 157149970 5599043 1909177..1909767 1 NC_009785.1 identified by match to protein family HMM PF03780; hypothetical protein 1909767 5599043 SGO_1834 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451102.1 1909177 D 467705 CDS YP_001451103.1 157151211 5597982 1909851..1910054 1 NC_009785.1 identified by match to protein family HMM PF05532; hypothetical protein 1910054 5597982 SGO_1835 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451103.1 1909851 D 467705 CDS YP_001451104.1 157149851 5597985 1911979..1913589 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter 1913589 5597985 SGO_1838 Streptococcus gordonii str. Challis substr. CH1 ABC transporter YP_001451104.1 1911979 D 467705 CDS YP_001451105.1 157150888 5599464 complement(1913652..1914107) 1 NC_009785.1 hypothetical protein 1914107 5599464 SGO_1839 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451105.1 1913652 R 467705 CDS YP_001451106.1 157150348 5598393 complement(1914123..1914257) 1 NC_009785.1 hypothetical protein 1914257 5598393 SGO_1840 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451106.1 1914123 R 467705 CDS YP_001451107.1 157150631 5599398 complement(1914487..1914717) 1 NC_009785.1 identified by match to protein family HMM PF04226; integral membrane protein 1914717 5599398 SGO_1841 Streptococcus gordonii str. Challis substr. CH1 integral membrane protein YP_001451107.1 1914487 R 467705 CDS YP_001451108.1 157150035 5598867 complement(1914721..1914990) 1 NC_009785.1 hypothetical protein 1914990 5598867 SGO_1842 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451108.1 1914721 R 467705 CDS YP_001451109.1 157151697 5598253 complement(1914971..1916212) 1 NC_009785.1 identified by match to protein family HMM PF02073; aminopeptidase PepS 1916212 pepS 5598253 pepS Streptococcus gordonii str. Challis substr. CH1 aminopeptidase PepS YP_001451109.1 1914971 R 467705 CDS YP_001451110.1 157150874 5598232 complement(1916430..1919282) 1 NC_009785.1 identified by match to protein family HMM PF00004; CbxX/CfqX family protein 1919282 5598232 SGO_1844 Streptococcus gordonii str. Challis substr. CH1 CbxX/CfqX family protein YP_001451110.1 1916430 R 467705 CDS YP_001451111.1 157150276 5598425 complement(1919456..1919605) 1 NC_009785.1 hypothetical protein 1919605 5598425 SGO_1845 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451111.1 1919456 R 467705 CDS YP_001451112.1 157151401 5598806 complement(1919624..1919770) 1 NC_009785.1 hypothetical protein 1919770 5598806 SGO_1846 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451112.1 1919624 R 467705 CDS YP_001451113.1 157150704 5599829 complement(1919757..1924145) 1 NC_009785.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1924145 polC 5599829 polC Streptococcus gordonii str. Challis substr. CH1 DNA polymerase III PolC YP_001451113.1 1919757 R 467705 CDS YP_001451114.1 157150376 5598733 1924312..1924854 1 NC_009785.1 putative lipoprotein 1924854 5598733 SGO_1848 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451114.1 1924312 D 467705 CDS YP_001451115.1 157149897 5599350 1924967..1925434 1 NC_009785.1 hypothetical protein 1925434 5599350 SGO_1849 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451115.1 1924967 D 467705 CDS YP_001451116.1 157149858 5597843 complement(1925538..1925918) 1 NC_009785.1 identified by match to protein family HMM PF08000; hypothetical protein 1925918 5597843 SGO_1850 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451116.1 1925538 R 467705 CDS YP_001451117.1 157150969 5599745 complement(1926009..1927859) 1 NC_009785.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1927859 proS 5599745 proS Streptococcus gordonii str. Challis substr. CH1 prolyl-tRNA synthetase YP_001451117.1 1926009 R 467705 CDS YP_001451118.1 157150783 5598243 complement(1927935..1929188) 1 NC_009785.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1929188 5598243 SGO_1852 Streptococcus gordonii str. Challis substr. CH1 membrane-associated zinc metalloprotease YP_001451118.1 1927935 R 467705 CDS YP_001451119.1 157150298 5598603 complement(1929348..1930151) 1 NC_009785.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1930151 cdsA 5598603 cdsA Streptococcus gordonii str. Challis substr. CH1 phosphatidate cytidylyltransferase YP_001451119.1 1929348 R 467705 CDS YP_001451120.1 157150748 5599473 complement(1930160..1930909) 1 NC_009785.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1930909 uppS 5599473 uppS Streptococcus gordonii str. Challis substr. CH1 undecaprenyl pyrophosphate synthase YP_001451120.1 1930160 R 467705 CDS YP_001451121.1 157150423 5598660 complement(1931170..1931502) 1 NC_009785.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1931502 yajC 5598660 yajC Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit YajC YP_001451121.1 1931170 R 467705 CDS YP_001451122.1 157150097 5599249 complement(1931674..1933788) 1 NC_009785.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent proteinase ATP-binding chain 1933788 5599249 SGO_1856 Streptococcus gordonii str. Challis substr. CH1 ATP-dependent proteinase ATP-binding chain YP_001451122.1 1931674 R 467705 CDS YP_001451123.1 157151326 5597892 complement(1934039..1935949) 1 NC_009785.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996; PTS system transporter subunit IIABC 1935949 5597892 SGO_1857 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIABC YP_001451123.1 1934039 R 467705 CDS YP_001451124.1 157150550 5599045 1936149..1937603 1 NC_009785.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322; beta-fructofuranosidase/sucrose 6 phoshate hydrolase 1937603 5599045 SGO_1858 Streptococcus gordonii str. Challis substr. CH1 beta-fructofuranosidase/sucrose 6 phoshate hydrolase YP_001451124.1 1936149 D 467705 CDS YP_001451125.1 157151516 5599016 1937584..1938549 1 NC_009785.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose regulon regulatory protein 1938549 5599016 SGO_1859 Streptococcus gordonii str. Challis substr. CH1 sucrose regulon regulatory protein YP_001451125.1 1937584 D 467705 CDS YP_001451126.1 157151086 5599765 complement(1938625..1939482) 1 NC_009785.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 1939482 5599765 SGO_1860 Streptococcus gordonii str. Challis substr. CH1 5'-nucleotidase YP_001451126.1 1938625 R 467705 CDS YP_001451127.1 157150386 5597974 complement(1939700..1940113) 1 NC_009785.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1940113 nusB 5597974 nusB Streptococcus gordonii str. Challis substr. CH1 transcription antitermination protein NusB YP_001451127.1 1939700 R 467705 CDS YP_001451128.1 157149895 5599329 complement(1940118..1940507) 1 NC_009785.1 identified by match to protein family HMM PF03780; alkaline shock protein 1940507 5599329 SGO_1862 Streptococcus gordonii str. Challis substr. CH1 alkaline shock protein YP_001451128.1 1940118 R 467705 CDS YP_001451129.1 157151284 5597797 complement(1940527..1941087) 1 NC_009785.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1941087 efp 5597797 efp Streptococcus gordonii str. Challis substr. CH1 elongation factor P YP_001451129.1 1940527 R 467705 CDS YP_001451130.1 157151592 5599110 complement(1941149..1942210) 1 NC_009785.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; X-Pro aminopeptidase 1942210 5599110 SGO_1864 Streptococcus gordonii str. Challis substr. CH1 X-Pro aminopeptidase YP_001451130.1 1941149 R 467705 CDS YP_001451131.1 157151411 5598561 complement(1942362..1945193) 1 NC_009785.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1945193 uvrA 5598561 uvrA Streptococcus gordonii str. Challis substr. CH1 excinuclease ABC subunit A YP_001451131.1 1942362 R 467705 CDS YP_001451132.1 157150449 5599814 1945322..1946266 1 NC_009785.1 identified by match to protein family HMM PF01544; magnesium and cobalt transporter 1946266 corA 5599814 corA Streptococcus gordonii str. Challis substr. CH1 magnesium and cobalt transporter YP_001451132.1 1945322 D 467705 CDS YP_001451133.1 157151027 5599204 1946285..1946959 1 NC_009785.1 identified by match to protein family HMM PF06570; hypothetical protein 1946959 5599204 SGO_1867 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451133.1 1946285 D 467705 CDS YP_001451134.1 157151163 5598090 complement(1946996..1947505) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 1947505 5598090 SGO_1868 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001451134.1 1946996 R 467705 CDS YP_001451135.1 157150521 5597842 complement(1947704..1948723) 1 NC_009785.1 hypothetical protein 1948723 5597842 SGO_1869 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451135.1 1947704 R 467705 CDS YP_001451136.1 157151120 5599070 complement(1948724..1950436) 1 NC_009785.1 hypothetical protein 1950436 5599070 SGO_1870 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451136.1 1948724 R 467705 CDS YP_001451137.1 157151256 5597914 1950514..1951512 1 NC_009785.1 putative lipoprotein 1951512 5597914 SGO_1871 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451137.1 1950514 D 467705 CDS YP_001451138.1 157149776 5599791 1951484..1952299 1 NC_009785.1 hypothetical protein 1952299 5599791 SGO_1872 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451138.1 1951484 D 467705 CDS YP_001451139.1 157150877 5599371 1952302..1952769 1 NC_009785.1 hypothetical protein 1952769 5599371 SGO_1873 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451139.1 1952302 D 467705 CDS YP_001451140.1 157150029 5598419 complement(1953073..1953282) 1 NC_009785.1 hypothetical protein 1953282 5598419 SGO_1874 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451140.1 1953073 R 467705 CDS YP_001451141.1 157150473 5599785 complement(1953188..1953289) 1 NC_009785.1 hypothetical protein 1953289 5599785 SGO_1875 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451141.1 1953188 R 467705 CDS YP_001451142.1 157151075 5599163 complement(1953282..1954826) 1 NC_009785.1 hypothetical protein 1954826 5599163 SGO_1876 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451142.1 1953282 R 467705 CDS YP_001451143.1 157151101 5597995 complement(1954819..1955532) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1955532 5597995 SGO_1877 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451143.1 1954819 R 467705 CDS YP_001451144.1 157151689 5597943 complement(1955673..1956287) 1 NC_009785.1 identified by match to protein family HMM PF00440; transcriptional regulator 1956287 5597943 SGO_1878 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451144.1 1955673 R 467705 CDS YP_001451145.1 157150434 5599831 complement(1956381..1956620) 1 NC_009785.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1956620 rpsR 5599831 rpsR Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S18 YP_001451145.1 1956381 R 467705 CDS YP_001451146.1 157150030 5599233 complement(1956659..1957150) 1 NC_009785.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1957150 ssb-1 5599233 ssb-1 Streptococcus gordonii str. Challis substr. CH1 single-stranded DNA-binding protein YP_001451146.1 1956659 R 467705 CDS YP_001451147.1 157149860 5599553 complement(1957167..1957457) 1 NC_009785.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1957457 rpsF 5599553 rpsF Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S6 YP_001451147.1 1957167 R 467705 CDS YP_001451148.1 157151501 5599751 1957670..1958233 1 NC_009785.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1958233 folE 5599751 folE Streptococcus gordonii str. Challis substr. CH1 GTP cyclohydrolase I YP_001451148.1 1957670 D 467705 CDS YP_001451149.1 157150721 5599124 1958281..1959102 1 NC_009785.1 hypothetical protein 1959102 5599124 SGO_1883 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451149.1 1958281 D 467705 CDS YP_001451150.1 157150289 5598706 complement(1959196..1959954) 1 NC_009785.1 identified by match to protein family HMM PF02677; hypothetical protein 1959954 5598706 SGO_1884 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451150.1 1959196 R 467705 CDS YP_001451151.1 157151055 5599485 complement(1960078..1961700) 1 NC_009785.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1961700 groEL 5599485 groEL Streptococcus gordonii str. Challis substr. CH1 chaperonin GroEL YP_001451151.1 1960078 R 467705 CDS YP_001451152.1 157150486 5598040 complement(1961723..1962004) 1 NC_009785.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1962004 groES 5598040 groES Streptococcus gordonii str. Challis substr. CH1 co-chaperonin GroES YP_001451152.1 1961723 R 467705 CDS YP_001451153.1 157150144 5599136 complement(1962164..1962967) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1962967 5599136 SGO_1887 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451153.1 1962164 R 467705 CDS YP_001451154.1 157151647 5599462 complement(1962967..1964940) 1 NC_009785.1 identified by match to protein family HMM PF02653; match to protein family HMM PF04392; permease 1964940 5599462 SGO_1888 Streptococcus gordonii str. Challis substr. CH1 permease YP_001451154.1 1962967 R 467705 CDS YP_001451155.1 157151230 5597824 complement(1965344..1965634) 1 NC_009785.1 hypothetical protein 1965634 5597824 SGO_1889 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451155.1 1965344 R 467705 CDS YP_001451156.1 157150819 5599754 complement(1965646..1966476) 1 NC_009785.1 identified by match to protein family HMM PF03613; PTS system fructose(mannose)-specific transporter subunit IID 1966476 5599754 SGO_1890 Streptococcus gordonii str. Challis substr. CH1 PTS system fructose(mannose)-specific transporter subunit IID YP_001451156.1 1965646 R 467705 CDS YP_001451157.1 157150313 5598529 complement(1966478..1967329) 1 NC_009785.1 identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 1967329 5598529 SGO_1891 Streptococcus gordonii str. Challis substr. CH1 PTS system transporter subunit IIC YP_001451157.1 1966478 R 467705 CDS YP_001451158.1 157149843 5599450 complement(1967360..1967854) 1 NC_009785.1 identified by match to protein family HMM PF03830; PTS system fructose(mannose)-specific transporter subunit IIB 1967854 5599450 SGO_1892 Streptococcus gordonii str. Challis substr. CH1 PTS system fructose(mannose)-specific transporter subunit IIB YP_001451158.1 1967360 R 467705 CDS YP_001451159.1 157151281 5599809 complement(1967875..1968312) 1 NC_009785.1 identified by match to protein family HMM PF03610; PTS system fructose(mannose)-specific transporter subunit IIA 1968312 5599809 SGO_1893 Streptococcus gordonii str. Challis substr. CH1 PTS system fructose(mannose)-specific transporter subunit IIA YP_001451159.1 1967875 R 467705 CDS YP_001451160.1 157150825 5598324 complement(1968529..1969812) 1 NC_009785.1 identified by match to protein family HMM PF01547; sugar-binding cell envelope protein 1969812 5598324 SGO_1894 Streptococcus gordonii str. Challis substr. CH1 sugar-binding cell envelope protein YP_001451160.1 1968529 R 467705 CDS YP_001451161.1 157150357 5598520 complement(1969809..1970492) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator 1970492 5598520 SGO_1895 Streptococcus gordonii str. Challis substr. CH1 response regulator YP_001451161.1 1969809 R 467705 CDS YP_001451162.1 157149835 5599384 complement(1970485..1971798) 1 NC_009785.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensory transduction histidine kinase 1971798 5599384 SGO_1896 Streptococcus gordonii str. Challis substr. CH1 sensory transduction histidine kinase YP_001451162.1 1970485 R 467705 CDS YP_001451163.1 157151524 5598148 complement(1971798..1972751) 1 NC_009785.1 identified by match to protein family HMM PF00532; ribose ABC transporter ribose-binding protein 1972751 rbsB 5598148 rbsB Streptococcus gordonii str. Challis substr. CH1 ribose ABC transporter ribose-binding protein YP_001451163.1 1971798 R 467705 CDS YP_001451164.1 157151063 5598980 complement(1973033..1974100) 1 NC_009785.1 identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107; glutamyl aminopeptidase 1974100 5598980 SGO_1898 Streptococcus gordonii str. Challis substr. CH1 glutamyl aminopeptidase YP_001451164.1 1973033 R 467705 CDS YP_001451165.1 157151111 5598027 1974280..1974567 1 NC_009785.1 hypothetical protein 1974567 5598027 SGO_1899 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451165.1 1974280 D 467705 CDS YP_001451166.1 157150438 5597927 1974564..1974881 1 NC_009785.1 identified by match to protein family HMM PF00085; thioredoxin family protein 1974881 5597927 SGO_1900 Streptococcus gordonii str. Challis substr. CH1 thioredoxin family protein YP_001451166.1 1974564 D 467705 CDS YP_001451167.1 157151519 5599228 1974898..1975524 1 NC_009785.1 identified by match to protein family HMM PF01588; tRNA-binding domain-containing protein 1975524 5599228 SGO_1901 Streptococcus gordonii str. Challis substr. CH1 tRNA-binding domain-containing protein YP_001451167.1 1974898 D 467705 CDS YP_001451168.1 157151033 5599271 1975587..1975982 1 NC_009785.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1975982 ssb 5599271 ssb Streptococcus gordonii str. Challis substr. CH1 single-stranded DNA-binding protein YP_001451168.1 1975587 D 467705 CDS YP_001451169.1 157150841 5598079 1976155..1977645 1 NC_009785.1 identified by match to protein family HMM PF08903; hypothetical protein 1977645 5598079 SGO_1903 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451169.1 1976155 D 467705 CDS YP_001451170.1 157151068 5598479 complement(1977699..1978133) 1 NC_009785.1 hypothetical protein 1978133 5598479 SGO_1904 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451170.1 1977699 R 467705 CDS YP_001451171.1 157150401 5598015 complement(1978143..1978307) 1 NC_009785.1 hypothetical protein 1978307 5598015 SGO_1905 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451171.1 1978143 R 467705 CDS YP_001451172.1 157149795 5599300 complement(1978304..1978507) 1 NC_009785.1 identified by match to protein family HMM PF01381; HTH DNA-binding protein 1978507 5599300 SGO_1906 Streptococcus gordonii str. Challis substr. CH1 HTH DNA-binding protein YP_001451172.1 1978304 R 467705 CDS YP_001451173.1 157151367 5598450 complement(1978804..1979841) 1 NC_009785.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein 1979841 5598450 SGO_1907 Streptococcus gordonii str. Challis substr. CH1 sensor protein YP_001451173.1 1978804 R 467705 CDS YP_001451174.1 157151201 5599023 complement(1979808..1980506) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA response regulator 1980506 5599023 SGO_1908 Streptococcus gordonii str. Challis substr. CH1 DNA response regulator YP_001451174.1 1979808 R 467705 CDS YP_001451175.1 157151631 5597772 complement(1980519..1981241) 1 NC_009785.1 hypothetical protein 1981241 5597772 SGO_1909 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451175.1 1980519 R 467705 CDS YP_001451176.1 157149969 5599607 complement(1981241..1982029) 1 NC_009785.1 hypothetical protein 1982029 5599607 SGO_1910 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451176.1 1981241 R 467705 CDS YP_001451177.1 157150554 5597998 complement(1982031..1982738) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATPase 1982738 5597998 SGO_1911 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATPase YP_001451177.1 1982031 R 467705 CDS YP_001451178.1 157150757 5599012 complement(1982837..1983649) 1 NC_009785.1 identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; bifunctional folate synthesis protein 1983649 5599012 SGO_1912 Streptococcus gordonii str. Challis substr. CH1 bifunctional folate synthesis protein YP_001451178.1 1982837 R 467705 CDS YP_001451179.1 157151280 5598644 complement(1983630..1984964) 1 NC_009785.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate synthetase 1984964 5598644 SGO_1913 Streptococcus gordonii str. Challis substr. CH1 dihydrofolate synthetase YP_001451179.1 1983630 R 467705 CDS YP_001451180.1 157149901 5599608 complement(1984966..1985931) 1 NC_009785.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1985931 folP 5599608 folP Streptococcus gordonii str. Challis substr. CH1 dihydropteroate synthase YP_001451180.1 1984966 R 467705 CDS YP_001451181.1 157150305 5598126 complement(1986009..1986674) 1 NC_009785.1 identified by match to protein family HMM PF02517; abortive infection protein 1986674 5598126 SGO_1915 Streptococcus gordonii str. Challis substr. CH1 abortive infection protein YP_001451181.1 1986009 R 467705 CDS YP_001451182.1 157150532 5599466 complement(1986722..1987912) 1 NC_009785.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1987912 ackA 5599466 ackA Streptococcus gordonii str. Challis substr. CH1 acetate kinase YP_001451182.1 1986722 R 467705 CDS YP_001451183.1 157150951 5599049 complement(1987962..1988915) 1 NC_009785.1 hypothetical protein 1988915 5599049 SGO_1917 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451183.1 1987962 R 467705 CDS YP_001451184.1 157151321 5598273 complement(1988946..1989374) 1 NC_009785.1 hypothetical protein 1989374 5598273 SGO_1918 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451184.1 1988946 R 467705 CDS YP_001451185.1 157150640 5597918 complement(1989358..1989795) 1 NC_009785.1 ComYD-like protein 1989795 5597918 SGO_1919 Streptococcus gordonii str. Challis substr. CH1 ComYD-like protein YP_001451185.1 1989358 R 467705 CDS YP_001451186.1 157150325 5598852 complement(1989779..1990072) 1 NC_009785.1 hypothetical protein 1990072 5598852 SGO_1920 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451186.1 1989779 R 467705 CDS YP_001451187.1 157150021 5599432 complement(1990044..1990472) 1 NC_009785.1 ComYD 1990472 comYD 5599432 comYD Streptococcus gordonii str. Challis substr. CH1 ComYD YP_001451187.1 1990044 R 467705 CDS YP_001451188.1 157151290 5598437 complement(1990432..1990749) 1 NC_009785.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; ComYC competence protein 1990749 comYC 5598437 comYC Streptococcus gordonii str. Challis substr. CH1 ComYC competence protein YP_001451188.1 1990432 R 467705 CDS YP_001451189.1 157150939 5599656 complement(1990746..1991780) 1 NC_009785.1 identified by match to protein family HMM PF00482; competence protein 1991780 comYB 5599656 comYB Streptococcus gordonii str. Challis substr. CH1 competence protein YP_001451189.1 1990746 R 467705 CDS YP_001451190.1 157150799 5598297 complement(1991692..1992651) 1 NC_009785.1 identified by match to protein family HMM PF00437; competence protein comYA 1992651 comYA 5598297 comYA Streptococcus gordonii str. Challis substr. CH1 competence protein comYA YP_001451190.1 1991692 R 467705 CDS YP_001451191.1 157151234 5598573 complement(1992753..1993121) 1 NC_009785.1 identified by match to protein family HMM PF06279; putative DNA binding protein 1993121 5598573 SGO_1925 Streptococcus gordonii str. Challis substr. CH1 putative DNA binding protein YP_001451191.1 1992753 R 467705 CDS YP_001451192.1 157150109 5598780 complement(1993372..1997019) 1 NC_009785.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1997019 rpoC 5598780 rpoC Streptococcus gordonii str. Challis substr. CH1 DNA-directed RNA polymerase subunit beta' YP_001451192.1 1993372 R 467705 CDS YP_001451193.1 157150595 5599625 complement(1997060..2000626) 1 NC_009785.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2000626 rpoB 5599625 rpoB Streptococcus gordonii str. Challis substr. CH1 DNA-directed RNA polymerase subunit beta YP_001451193.1 1997060 R 467705 CDS YP_001451194.1 157150384 5598934 complement(2001049..2003598) 1 NC_009785.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1B 2003598 pbp1b 5598934 pbp1b Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 1B YP_001451194.1 2001049 R 467705 CDS YP_001451195.1 157150873 5599339 2003776..2005032 1 NC_009785.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2005032 tyrS 5599339 tyrS Streptococcus gordonii str. Challis substr. CH1 tyrosyl-tRNA synthetase YP_001451195.1 2003776 D 467705 CDS YP_001451196.1 157151492 5598426 2005120..2005968 1 NC_009785.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; ribosomal RNA large subunit methyltransferase A 2005968 rrmA 5598426 rrmA Streptococcus gordonii str. Challis substr. CH1 ribosomal RNA large subunit methyltransferase A YP_001451196.1 2005120 D 467705 CDS YP_001451197.1 157150594 5599726 complement(2005994..2006539) 1 NC_009785.1 putative lipoprotein 2006539 5599726 SGO_1931 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451197.1 2005994 R 467705 CDS YP_001451198.1 157150124 5598936 complement(2006636..2007247) 1 NC_009785.1 hypothetical protein 2007247 5598936 SGO_1932 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451198.1 2006636 R 467705 CDS YP_001451199.1 157150940 5599282 complement(2007384..2007593) 1 NC_009785.1 identified by match to protein family HMM PF00403; copper transport protein CopZ-like protein 2007593 5599282 SGO_1933 Streptococcus gordonii str. Challis substr. CH1 copper transport protein CopZ-like protein YP_001451199.1 2007384 R 467705 CDS YP_001451200.1 157150209 5598296 complement(2007614..2009857) 1 NC_009785.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2009857 5598296 SGO_1934 Streptococcus gordonii str. Challis substr. CH1 copper-translocating P-type ATPase YP_001451200.1 2007614 R 467705 CDS YP_001451201.1 157149800 5599047 complement(2009868..2010299) 1 NC_009785.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698; negative transcriptional regulator, CopY 2010299 5599047 SGO_1935 Streptococcus gordonii str. Challis substr. CH1 negative transcriptional regulator, CopY YP_001451201.1 2009868 R 467705 CDS YP_001451202.1 157150803 5599602 complement(2010448..2011950) 1 NC_009785.1 identified by match to protein family HMM PF01297; match to protein family HMM PF09223; metal-binding (Mn) permease 2011950 adcA 5599602 adcA Streptococcus gordonii str. Challis substr. CH1 metal-binding (Mn) permease YP_001451202.1 2010448 R 467705 CDS YP_001451203.1 157151144 5598560 complement(2011960..2012766) 1 NC_009785.1 identified by match to protein family HMM PF00950; ABC transporter permease, Mn 2012766 adcB 5598560 adcB Streptococcus gordonii str. Challis substr. CH1 ABC transporter permease, Mn YP_001451203.1 2011960 R 467705 CDS YP_001451204.1 157150498 5597872 complement(2012759..2013469) 1 NC_009785.1 identified by similarity to GB:AAO43168.1; match to protein family HMM PF00005; ATP-binding protein, Mn 2013469 adcC 5597872 adcC Streptococcus gordonii str. Challis substr. CH1 ATP-binding protein, Mn YP_001451204.1 2012759 R 467705 CDS YP_001451205.1 157151495 5599115 complement(2013466..2013909) 1 NC_009785.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; repressor protein adcR 2013909 adcR 5599115 adcR Streptococcus gordonii str. Challis substr. CH1 repressor protein adcR YP_001451205.1 2013466 R 467705 CDS YP_001451206.1 157151036 5599058 2014527..2015669 1 NC_009785.1 identified by match to protein family HMM PF07690; transporter 2015669 5599058 SGO_1940 Streptococcus gordonii str. Challis substr. CH1 transporter YP_001451206.1 2014527 D 467705 CDS YP_001451207.1 157150330 5599843 complement(2022329..2023609) 1 NC_009785.1 hypothetical protein 2023609 5599843 SGO_1957 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451207.1 2022329 R 467705 CDS YP_001451208.1 157149872 5599424 complement(2023988..2024374) 1 NC_009785.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2024374 rplQ 5599424 rplQ Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L17 YP_001451208.1 2023988 R 467705 CDS YP_001451209.1 157150884 5598925 complement(2024386..2025324) 1 NC_009785.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2025324 rpoA 5598925 rpoA Streptococcus gordonii str. Challis substr. CH1 DNA-directed RNA polymerase subunit alpha YP_001451209.1 2024386 R 467705 CDS YP_001451210.1 157150189 5598399 complement(2025370..2025753) 1 NC_009785.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2025753 rpsK 5598399 rpsK Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S11 YP_001451210.1 2025370 R 467705 CDS YP_001451211.1 157149729 5598546 complement(2025773..2026138) 1 NC_009785.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2026138 rpsM 5598546 rpsM Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S13 YP_001451211.1 2025773 R 467705 CDS YP_001451212.1 157150587 5597739 complement(2026155..2026271) 1 NC_009785.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 2026271 rpmJ 5597739 rpmJ Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L36 YP_001451212.1 2026155 R 467705 CDS YP_001451213.1 157151340 5598944 complement(2026296..2026568) 1 NC_009785.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2026568 infA 5598944 infA Streptococcus gordonii str. Challis substr. CH1 translation initiation factor IF-1 YP_001451213.1 2026296 R 467705 CDS YP_001451214.1 157150012 5599513 complement(2026632..2027270) 1 NC_009785.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2027270 adk 5599513 adk Streptococcus gordonii str. Challis substr. CH1 adenylate kinase YP_001451214.1 2026632 R 467705 CDS YP_001451215.1 157150478 5598094 complement(2027366..2028676) 1 NC_009785.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2028676 secY 5598094 secY Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit SecY YP_001451215.1 2027366 R 467705 CDS YP_001451216.1 157150918 5599151 complement(2028689..2029129) 1 NC_009785.1 late assembly protein; 50S ribosomal protein L15 2029129 rplO 5599151 rplO Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L15 YP_001451216.1 2028689 R 467705 CDS YP_001451217.1 157151311 5598331 complement(2029285..2029509) 1 NC_009785.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2029509 rpmD 5598331 rpmD Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L30 YP_001451217.1 2029285 R 467705 CDS YP_001451218.1 157151183 5598816 complement(2029481..2029975) 1 NC_009785.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2029975 rpsE 5598816 rpsE Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S5 YP_001451218.1 2029481 R 467705 CDS YP_001451219.1 157150445 5597808 complement(2029994..2030350) 1 NC_009785.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2030350 rplR 5597808 rplR Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L18 YP_001451219.1 2029994 R 467705 CDS YP_001451220.1 157149994 5599211 complement(2030433..2030969) 1 NC_009785.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2030969 rplF 5599211 rplF Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L6 YP_001451220.1 2030433 R 467705 CDS YP_001451221.1 157151418 5599169 complement(2031158..2031556) 1 NC_009785.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2031556 rpsH 5599169 rpsH Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S8 YP_001451221.1 2031158 R 467705 CDS YP_001451222.1 157150316 5598492 complement(2031841..2032026) 1 NC_009785.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2032026 rpsN 5598492 rpsN Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S14 YP_001451222.1 2031841 R 467705 CDS YP_001451223.1 157151167 5599445 complement(2032044..2032586) 1 NC_009785.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2032586 rplE 5599445 rplE Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L5 YP_001451223.1 2032044 R 467705 CDS YP_001451224.1 157151246 5597837 complement(2032610..2032915) 1 NC_009785.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2032915 rplX 5597837 rplX Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L24 YP_001451224.1 2032610 R 467705 CDS YP_001451225.1 157151544 5598277 complement(2032990..2033358) 1 NC_009785.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2033358 rplN 5598277 rplN Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L14 YP_001451225.1 2032990 R 467705 CDS YP_001451226.1 157151002 5599069 complement(2033384..2033644) 1 NC_009785.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2033644 rpsQ 5599069 rpsQ Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S17 YP_001451226.1 2033384 R 467705 CDS YP_001451227.1 157150636 5598163 complement(2033668..2033874) 1 NC_009785.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2033874 rpmC 5598163 rpmC Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L29 YP_001451227.1 2033668 R 467705 CDS YP_001451228.1 157150036 5598861 complement(2033884..2034297) 1 NC_009785.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2034297 rplP 5598861 rplP Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L16 YP_001451228.1 2033884 R 467705 CDS YP_001451229.1 157151263 5598481 complement(2034301..2034954) 1 NC_009785.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2034954 rpsC 5598481 rpsC Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S3 YP_001451229.1 2034301 R 467705 CDS YP_001451230.1 157150683 5598362 complement(2034967..2035311) 1 NC_009785.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2035311 rplV 5598362 rplV Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L22 YP_001451230.1 2034967 R 467705 CDS YP_001451231.1 157150345 5598783 complement(2035323..2035604) 1 NC_009785.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2035604 rpsS 5598783 rpsS Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S19 YP_001451231.1 2035323 R 467705 CDS YP_001451232.1 157150843 5599405 complement(2035691..2036524) 1 NC_009785.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2036524 rplB 5599405 rplB Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L2 YP_001451232.1 2035691 R 467705 CDS YP_001451233.1 157150391 5598476 complement(2036542..2036838) 1 NC_009785.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2036838 rplW 5598476 rplW Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L23 YP_001451233.1 2036542 R 467705 CDS YP_001451234.1 157149830 5599319 complement(2036838..2037461) 1 NC_009785.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2037461 rplD 5599319 rplD Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L4 YP_001451234.1 2036838 R 467705 CDS YP_001451235.1 157151310 5598138 complement(2037486..2038112) 1 NC_009785.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2038112 rplC 5598138 rplC Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L3 YP_001451235.1 2037486 R 467705 CDS YP_001451236.1 157150655 5597840 complement(2038196..2038504) 1 NC_009785.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2038504 rpsJ 5597840 rpsJ Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S10 YP_001451236.1 2038196 R 467705 CDS YP_001451237.1 157150047 5598832 2038703..2038864 1 NC_009785.1 hypothetical protein 2038864 5598832 SGO_1987 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451237.1 2038703 D 467705 CDS YP_001451238.1 157151564 5598841 complement(2038914..2039570) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 2039570 5598841 SGO_1988 Streptococcus gordonii str. Challis substr. CH1 HAD superfamily hydrolase YP_001451238.1 2038914 R 467705 CDS YP_001451239.1 157150412 5598146 complement(2039627..2040919) 1 NC_009785.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2040919 purA 5598146 purA Streptococcus gordonii str. Challis substr. CH1 adenylosuccinate synthetase YP_001451239.1 2039627 R 467705 CDS YP_001451240.1 157150998 5599275 2041216..2043471 1 NC_009785.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 2043471 5599275 SGO_1990 Streptococcus gordonii str. Challis substr. CH1 bifunctional glutamate--cysteine ligase/glutathione synthetase YP_001451240.1 2041216 D 467705 CDS YP_001451241.1 157151594 5598173 2043661..2044533 1 NC_009785.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2044533 hslO 5598173 hslO Streptococcus gordonii str. Challis substr. CH1 Hsp33-like chaperonin YP_001451241.1 2043661 D 467705 CDS YP_001451242.1 157149934 5598543 complement(2044420..2044692) 1 NC_009785.1 hypothetical protein 2044692 5598543 SGO_1992 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451242.1 2044420 R 467705 CDS YP_001451243.1 157151554 5599807 2044544..2045497 1 NC_009785.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; transcriptional regulator 2045497 5599807 SGO_1993 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451243.1 2044544 D 467705 CDS YP_001451244.1 157151191 5599212 complement(2045537..2046211) 1 NC_009785.1 putative lipoprotein 2046211 5599212 SGO_1994 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451244.1 2045537 R 467705 CDS YP_001451245.1 157150262 5597793 complement(2046448..2047236) 1 NC_009785.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 2047236 5597793 SGO_1995 Streptococcus gordonii str. Challis substr. CH1 MutT/nudix family protein YP_001451245.1 2046448 R 467705 CDS YP_001451246.1 157149686 5599582 complement(2047280..2048095) 1 NC_009785.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter 2048095 5599582 SGO_1996 Streptococcus gordonii str. Challis substr. CH1 nicotinamide mononucleotide transporter YP_001451246.1 2047280 R 467705 CDS YP_001451247.1 157151443 5598225 complement(2048117..2049175) 1 NC_009785.1 identified by match to protein family HMM TIGR00125; transcriptional regulator 2049175 nadR 5598225 nadR Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451247.1 2048117 R 467705 CDS YP_001451248.1 157150882 5598670 complement(2049395..2051824) 1 NC_009785.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent Clp proteinase, ATP-binding chain 2051824 clpB 5598670 clpB Streptococcus gordonii str. Challis substr. CH1 ATP-dependent Clp proteinase, ATP-binding chain YP_001451248.1 2049395 R 467705 CDS YP_001451249.1 157150958 5598402 complement(2051831..2052289) 1 NC_009785.1 identified by match to protein family HMM PF05848; transcription regulator ctsR 2052289 ctsR 5598402 ctsR Streptococcus gordonii str. Challis substr. CH1 transcription regulator ctsR YP_001451249.1 2051831 R 467705 CDS YP_001451250.1 157150606 5598261 complement(2053066..2054109) 1 NC_009785.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2054109 tsf 5598261 tsf Streptococcus gordonii str. Challis substr. CH1 elongation factor Ts YP_001451250.1 2053066 R 467705 CDS YP_001451251.1 157150122 5598912 complement(2054188..2054970) 1 NC_009785.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2054970 rpsB 5598912 rpsB Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S2 YP_001451251.1 2054188 R 467705 CDS YP_001451252.1 157150427 5598999 2055112..2055234 1 NC_009785.1 hypothetical protein 2055234 5598999 SGO_2002 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451252.1 2055112 D 467705 CDS YP_001451253.1 157150742 5599870 complement(2055549..2057972) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 2057972 5599870 SGO_2004 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001451253.1 2055549 R 467705 CDS YP_001451254.1 157150875 5598672 complement(2058049..2068989) 1 NC_009785.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 2068989 5598672 SGO_2005 Streptococcus gordonii str. Challis substr. CH1 LPXTG cell wall surface protein YP_001451254.1 2058049 R 467705 CDS YP_001451255.1 157151464 5598424 complement(2069055..2069618) 1 NC_009785.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin signature protein 2069618 5598424 SGO_2006 Streptococcus gordonii str. Challis substr. CH1 thioredoxin signature protein YP_001451255.1 2069055 R 467705 CDS YP_001451256.1 157150102 5598494 complement(2070003..2070539) 1 NC_009785.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 2070539 nusG 5598494 nusG Streptococcus gordonii str. Challis substr. CH1 transcription antitermination protein NusG YP_001451256.1 2070003 R 467705 CDS YP_001451257.1 157150547 5597738 complement(2070723..2070899) 1 NC_009785.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 2070899 secE 5597738 secE Streptococcus gordonii str. Challis substr. CH1 preprotein translocase subunit SecE YP_001451257.1 2070723 R 467705 CDS YP_001451258.1 157150648 5599022 2071212..2072126 1 NC_009785.1 identified by match to protein family HMM PF04228; zinc proteinase 2072126 5599022 SGO_2009 Streptococcus gordonii str. Challis substr. CH1 zinc proteinase YP_001451258.1 2071212 D 467705 CDS YP_001451259.1 157151053 5598843 complement(2072250..2074472) 1 NC_009785.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 2A 2074472 pbp2a 5598843 pbp2a Streptococcus gordonii str. Challis substr. CH1 penicillin-binding protein 2A YP_001451259.1 2072250 R 467705 CDS YP_001451260.1 157149723 5598045 2074623..2075495 1 NC_009785.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 2075495 5598045 SGO_2011 Streptococcus gordonii str. Challis substr. CH1 ribosomal large subunit pseudouridine synthase D YP_001451260.1 2074623 D 467705 CDS YP_001451261.1 157150192 5597770 complement(2075667..2076638) 1 NC_009785.1 identified by match to protein family HMM PF01757; transmembrane protein 2076638 5597770 SGO_2012 Streptococcus gordonii str. Challis substr. CH1 transmembrane protein YP_001451261.1 2075667 R 467705 CDS YP_001451262.1 157151602 5598309 complement(2076906..2080388) 1 NC_009785.1 identified by match to protein family HMM PF01183; match to protein family HMM PF08481; putative N-acetylmuramidase/lysin 2080388 5598309 SGO_2013 Streptococcus gordonii str. Challis substr. CH1 putative N-acetylmuramidase/lysin YP_001451262.1 2076906 R 467705 CDS YP_001451263.1 157150546 5598640 complement(2080914..2082323) 1 NC_009785.1 polysaccharide transporter 2082323 5598640 SGO_2015 Streptococcus gordonii str. Challis substr. CH1 polysaccharide transporter YP_001451263.1 2080914 R 467705 CDS YP_001451264.1 157149940 5599024 complement(2082334..2083425) 1 NC_009785.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; nucleotide sugar dehydratase 2083425 5599024 SGO_2016 Streptococcus gordonii str. Challis substr. CH1 nucleotide sugar dehydratase YP_001451264.1 2082334 R 467705 CDS YP_001451265.1 157151041 5599137 complement(2083400..2084122) 1 NC_009785.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01128; nucleotidyltransferase 2084122 5599137 SGO_2017 Streptococcus gordonii str. Challis substr. CH1 nucleotidyltransferase YP_001451265.1 2083400 R 467705 CDS YP_001451266.1 157151472 5598068 complement(2084125..2085444) 1 NC_009785.1 extrracellular polysaccharide polymerase putative 2085444 5598068 SGO_2018 Streptococcus gordonii str. Challis substr. CH1 extrracellular polysaccharide polymerase putative YP_001451266.1 2084125 R 467705 CDS YP_001451267.1 157149684 5598459 complement(2085444..2086310) 1 NC_009785.1 identified by match to protein family HMM PF04991; licD3 protein 2086310 licD 5598459 licD Streptococcus gordonii str. Challis substr. CH1 licD3 protein YP_001451267.1 2085444 R 467705 CDS YP_001451268.1 157150673 5598254 complement(2086372..2087328) 1 NC_009785.1 identified by match to protein family HMM PF00535; glycosyltransferase 2087328 5598254 SGO_2020 Streptococcus gordonii str. Challis substr. CH1 glycosyltransferase YP_001451268.1 2086372 R 467705 CDS YP_001451269.1 157150840 5598799 complement(2087325..2088152) 1 NC_009785.1 identified by match to protein family HMM PF00535; extracellular polysaccharide glycosyltransferase 2088152 5598799 SGO_2021 Streptococcus gordonii str. Challis substr. CH1 extracellular polysaccharide glycosyltransferase YP_001451269.1 2087325 R 467705 CDS YP_001451270.1 157151318 5598485 complement(2088168..2089034) 1 NC_009785.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucose 4-epimerase 2089034 5598485 SGO_2022 Streptococcus gordonii str. Challis substr. CH1 UDP-glucose 4-epimerase YP_001451270.1 2088168 R 467705 CDS YP_001451271.1 157151200 5598006 complement(2089042..2089647) 1 NC_009785.1 identified by match to protein family HMM PF02397; galactosyltransferase 2089647 5598006 SGO_2023 Streptococcus gordonii str. Challis substr. CH1 galactosyltransferase YP_001451271.1 2089042 R 467705 CDS YP_001451272.1 157151237 5597774 complement(2089661..2091472) 1 NC_009785.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; extracellular polysaccharide biosynthesis 2091472 5597774 SGO_2024 Streptococcus gordonii str. Challis substr. CH1 extracellular polysaccharide biosynthesis YP_001451272.1 2089661 R 467705 CDS YP_001451273.1 157151662 5597791 complement(2091491..2092186) 1 NC_009785.1 identified by match to protein family HMM TIGR01007; putative autophosphorylating protein tyrosine kinase 2092186 wze 5597791 wze Streptococcus gordonii str. Challis substr. CH1 putative autophosphorylating protein tyrosine kinase YP_001451273.1 2091491 R 467705 CDS YP_001451274.1 157151339 5599270 complement(2092196..2092891) 1 NC_009785.1 identified by match to protein family HMM PF02706; MPA1 family polysaccharide export protein 2092891 wzd 5599270 wzd Streptococcus gordonii str. Challis substr. CH1 MPA1 family polysaccharide export protein YP_001451274.1 2092196 R 467705 CDS YP_001451275.1 157150889 5599560 complement(2092922..2093653) 1 NC_009785.1 identified by match to protein family HMM PF02811; wzh/putative phosphotyrosine-protein phosphatase 2093653 wzh 5599560 wzh Streptococcus gordonii str. Challis substr. CH1 wzh/putative phosphotyrosine-protein phosphatase YP_001451275.1 2092922 R 467705 CDS YP_001451276.1 157150716 5598391 complement(2093657..2095117) 1 NC_009785.1 identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 2095117 wzg 5598391 wzg Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451276.1 2093657 R 467705 CDS YP_001451277.1 157150268 5598713 complement(2095411..2096010) 1 NC_009785.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleotide triphosphate reductase activator protein 2096010 nrdG 5598713 nrdG Streptococcus gordonii str. Challis substr. CH1 anaerobic ribonucleotide triphosphate reductase activator protein YP_001451277.1 2095411 R 467705 CDS YP_001451278.1 157149854 5598397 complement(2096007..2096525) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 2096525 5598397 SGO_2030 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001451278.1 2096007 R 467705 CDS YP_001451279.1 157151484 5599433 complement(2096535..2097038) 1 NC_009785.1 identified by match to protein family HMM PF00583; acetyltransferase 2097038 5599433 SGO_2031 Streptococcus gordonii str. Challis substr. CH1 acetyltransferase YP_001451279.1 2096535 R 467705 CDS YP_001451280.1 157150440 5599743 complement(2097053..2097196) 1 NC_009785.1 hypothetical protein 2097196 5599743 SGO_2032 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451280.1 2097053 R 467705 CDS YP_001451281.1 157151175 5599224 complement(2097278..2099482) 1 NC_009785.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2099482 nrdD 5599224 nrdD Streptococcus gordonii str. Challis substr. CH1 anaerobic ribonucleoside triphosphate reductase YP_001451281.1 2097278 R 467705 CDS YP_001451282.1 157150662 5597821 complement(2099592..2101163) 1 NC_009785.1 hypothetical protein 2101163 5597821 SGO_2034 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451282.1 2099592 R 467705 CDS YP_001451283.1 157150022 5598818 2101248..2101346 1 NC_009785.1 hypothetical protein 2101346 5598818 SGO_2035 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451283.1 2101248 D 467705 CDS YP_001451284.1 157151649 5598580 complement(2101253..2101396) 1 NC_009785.1 hypothetical protein 2101396 5598580 SGO_2036 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451284.1 2101253 R 467705 CDS YP_001451285.1 157151181 5599769 complement(2101494..2102999) 1 NC_009785.1 identified by match to protein family HMM PF00614; cardiolipin synthase 2102999 5599769 SGO_2037 Streptococcus gordonii str. Challis substr. CH1 cardiolipin synthase YP_001451285.1 2101494 R 467705 CDS YP_001451286.1 157150229 5597811 complement(2103143..2103622) 1 NC_009785.1 putative lipoprotein 2103622 5597811 SGO_2038 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451286.1 2103143 R 467705 CDS YP_001451287.1 157149730 5599590 complement(2103730..2104968) 1 NC_009785.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate synthase 2104968 5599590 SGO_2039 Streptococcus gordonii str. Challis substr. CH1 dihydrofolate synthase YP_001451287.1 2103730 R 467705 CDS YP_001451288.1 157149719 5599866 complement(2105219..2105530) 1 NC_009785.1 identified by match to protein family HMM PF06949; hypothetical protein 2105530 5599866 SGO_2040 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451288.1 2105219 R 467705 CDS YP_001451289.1 157151461 5599280 complement(2105552..2105971) 1 NC_009785.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2105971 5599280 SGO_2041 Streptococcus gordonii str. Challis substr. CH1 Holliday junction resolvase-like protein YP_001451289.1 2105552 R 467705 CDS YP_001451290.1 157150481 5598465 complement(2105971..2106237) 1 NC_009785.1 identified by match to protein family HMM PF06135; hypothetical protein 2106237 5598465 SGO_2042 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451290.1 2105971 R 467705 CDS YP_001451291.1 157150353 5599143 complement(2106349..2106921) 1 NC_009785.1 putative lipoprotein 2106921 5599143 SGO_2043 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451291.1 2106349 R 467705 CDS YP_001451292.1 157150525 5599389 complement(2107067..2107465) 1 NC_009785.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 2107465 spxA 5599389 spxA Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator Spx YP_001451292.1 2107067 R 467705 CDS YP_001451293.1 157150986 5599061 complement(2107552..2108703) 1 NC_009785.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2108703 recA 5599061 recA Streptococcus gordonii str. Challis substr. CH1 recombinase A YP_001451293.1 2107552 R 467705 CDS YP_001451294.1 157151212 5598202 complement(2108761..2110017) 1 NC_009785.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 2110017 cinA 5598202 cinA Streptococcus gordonii str. Challis substr. CH1 competence damage-inducible protein A YP_001451294.1 2108761 R 467705 CDS YP_001451295.1 157150101 5597756 2110292..2110702 1 NC_009785.1 identified by match to protein family HMM PF01381; transcriptional regulator 2110702 5597756 SGO_2047 Streptococcus gordonii str. Challis substr. CH1 transcriptional regulator YP_001451295.1 2110292 D 467705 CDS YP_001451296.1 157150988 5597761 complement(2110754..2111449) 1 NC_009785.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2111449 5597761 SGO_2048 Streptococcus gordonii str. Challis substr. CH1 CAAX amino terminal protease family protein YP_001451296.1 2110754 R 467705 CDS YP_001451297.1 157149886 5598199 complement(2111418..2111972) 1 NC_009785.1 identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 2111972 tagI 5598199 tagI Streptococcus gordonii str. Challis substr. CH1 DNA-3-methyladenine glycosylase I YP_001451297.1 2111418 R 467705 CDS YP_001451298.1 157150589 5598853 complement(2111982..2112572) 1 NC_009785.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2112572 ruvA 5598853 ruvA Streptococcus gordonii str. Challis substr. CH1 Holliday junction DNA helicase RuvA YP_001451298.1 2111982 R 467705 CDS YP_001451299.1 157150768 5598942 2112742..2113245 1 NC_009785.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 2113245 5598942 SGO_2051 Streptococcus gordonii str. Challis substr. CH1 Cro/CI family transcriptional regulator YP_001451299.1 2112742 D 467705 CDS YP_001451300.1 157150835 5598627 2113229..2113750 1 NC_009785.1 identified by match to protein family HMM PF06271; hypothetical protein 2113750 5598627 SGO_2052 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451300.1 2113229 D 467705 CDS YP_001451301.1 157151210 5598501 complement(2113786..2115729) 1 NC_009785.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2115729 mutL 5598501 mutL Streptococcus gordonii str. Challis substr. CH1 DNA mismatch repair protein YP_001451301.1 2113786 R 467705 CDS YP_001451302.1 157149702 5597759 2115914..2116354 1 NC_009785.1 identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein 2116354 5597759 SGO_2054 Streptococcus gordonii str. Challis substr. CH1 LytTr DNA-binding domain-containing protein YP_001451302.1 2115914 D 467705 CDS YP_001451303.1 157150354 5598044 2116351..2116821 1 NC_009785.1 hypothetical protein 2116821 5598044 SGO_2055 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451303.1 2116351 D 467705 CDS YP_001451304.1 157150901 5599388 complement(2116870..2119413) 1 NC_009785.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2119413 mutS 5599388 mutS Streptococcus gordonii str. Challis substr. CH1 DNA mismatch repair protein MutS YP_001451304.1 2116870 R 467705 CDS YP_001451305.1 157150461 5598369 complement(2119592..2120029) 1 NC_009785.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529; arginine repressor 2120029 argR 5598369 argR Streptococcus gordonii str. Challis substr. CH1 arginine repressor YP_001451305.1 2119592 R 467705 CDS YP_001451306.1 157149704 5599182 2120158..2121846 1 NC_009785.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2121846 argS 5599182 argS Streptococcus gordonii str. Challis substr. CH1 arginyl-tRNA synthetase YP_001451306.1 2120158 D 467705 CDS YP_001451307.1 157151342 5599559 complement(2122075..2123010) 1 NC_009785.1 identified by match to protein family HMM PF02588; hypothetical protein 2123010 5599559 SGO_2059 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451307.1 2122075 R 467705 CDS YP_001451308.1 157151663 5599860 complement(2122997..2124751) 1 NC_009785.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2124751 aspS 5599860 aspS Streptococcus gordonii str. Challis substr. CH1 aspartyl-tRNA synthetase YP_001451308.1 2122997 R 467705 CDS YP_001451309.1 157150272 5598285 complement(2124883..2125092) 1 NC_009785.1 hypothetical protein 2125092 5598285 SGO_2061 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451309.1 2124883 R 467705 CDS YP_001451310.1 157149956 5599343 complement(2125182..2126462) 1 NC_009785.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2126462 hisS 5599343 hisS Streptococcus gordonii str. Challis substr. CH1 histidyl-tRNA synthetase YP_001451310.1 2125182 R 467705 CDS YP_001451311.1 157151447 5599799 2126643..2126984 1 NC_009785.1 identified by match to protein family HMM PF01883; hypothetical protein 2126984 5599799 SGO_2063 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451311.1 2126643 D 467705 CDS YP_001451312.1 157150528 5598705 complement(2127050..2128756) 1 NC_009785.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2128756 ilvD 5598705 ilvD Streptococcus gordonii str. Challis substr. CH1 dihydroxy-acid dehydratase YP_001451312.1 2127050 R 467705 CDS YP_001451313.1 157150023 5599056 2128998..2129180 1 NC_009785.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2129180 rpmF 5599056 rpmF Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L32 YP_001451313.1 2128998 D 467705 CDS YP_001451314.1 157149657 5599084 2129196..2129345 1 NC_009785.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2129345 rpmG 5599084 rpmG Streptococcus gordonii str. Challis substr. CH1 50S ribosomal protein L33 YP_001451314.1 2129196 D 467705 CDS YP_001451315.1 157151152 5598599 complement(2129825..2130610) 1 NC_009785.1 identified by match to protein family HMM PF06182; multidrug efflux membrane protein 2130610 5598599 SGO_2067 Streptococcus gordonii str. Challis substr. CH1 multidrug efflux membrane protein YP_001451315.1 2129825 R 467705 CDS YP_001451316.1 157150274 5597862 complement(2130612..2131394) 1 NC_009785.1 identified by match to protein family HMM PF06182; hypothetical protein 2131394 5597862 SGO_2068 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451316.1 2130612 R 467705 CDS YP_001451317.1 157149741 5597999 complement(2131403..2132389) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2132389 5597999 SGO_2069 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451317.1 2131403 R 467705 CDS YP_001451318.1 157151471 5599811 complement(2134030..2134929) 1 NC_009785.1 hypothetical protein 2134929 5599811 SGO_2070 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451318.1 2134030 R 467705 CDS YP_001451319.1 157151489 5598760 complement(2135114..2136085) 1 NC_009785.1 hypothetical protein 2136085 5598760 SGO_2071 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451319.1 2135114 R 467705 CDS YP_001451320.1 157150368 5599034 2137128..2137448 1 NC_009785.1 hypothetical protein 2137448 5599034 SGO_2072 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451320.1 2137128 D 467705 CDS YP_001451321.1 157150848 5599366 2137448..2138536 1 NC_009785.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family subfamily 2138536 5599366 SGO_2073 Streptococcus gordonii str. Challis substr. CH1 FtsK/SpoIIIE family subfamily YP_001451321.1 2137448 D 467705 CDS YP_001451322.1 157151289 5598468 2138540..2139139 1 NC_009785.1 hypothetical protein 2139139 5598468 SGO_2074 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451322.1 2138540 D 467705 CDS YP_001451323.1 157149663 5597885 2139351..2139965 1 NC_009785.1 identified by match to protein family HMM PF01719; plasmid replication protein 2139965 5597885 SGO_2075 Streptococcus gordonii str. Challis substr. CH1 plasmid replication protein YP_001451323.1 2139351 D 467705 CDS YP_001451324.1 157150632 5598551 2140291..2141556 1 NC_009785.1 identified by match to protein family HMM PF00589; phage integrase family protein 2141556 5598551 SGO_2076 Streptococcus gordonii str. Challis substr. CH1 phage integrase family protein YP_001451324.1 2140291 D 467705 CDS YP_001451325.1 157151091 5598866 complement(2142183..2142938) 1 NC_009785.1 hypothetical protein 2142938 5598866 SGO_2077 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451325.1 2142183 R 467705 CDS YP_001451326.1 157150685 5597960 complement(2142931..2143764) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2143764 5597960 SGO_2078 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451326.1 2142931 R 467705 CDS YP_001451327.1 157151032 5598776 complement(2143764..2144003) 1 NC_009785.1 hypothetical protein 2144003 5598776 SGO_2079 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451327.1 2143764 R 467705 CDS YP_001451328.1 157149766 5598080 complement(2144235..2145155) 1 NC_009785.1 identified by match to protein family HMM PF01381; transcription activator plcR 2145155 5598080 SGO_2080 Streptococcus gordonii str. Challis substr. CH1 transcription activator plcR YP_001451328.1 2144235 R 467705 CDS YP_001451329.1 157150037 5599295 2145513..2146205 1 NC_009785.1 putative lipoprotein 2146205 5599295 SGO_2081 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451329.1 2145513 D 467705 CDS YP_001451330.1 157151587 5597845 2146221..2146934 1 NC_009785.1 putative lipoprotein 2146934 5597845 SGO_2082 Streptococcus gordonii str. Challis substr. CH1 putative lipoprotein YP_001451330.1 2146221 D 467705 CDS YP_001451331.1 157151007 5598552 2147186..2147782 1 NC_009785.1 identified by match to protein family HMM PF00440; putative transcriptional regulator 2147782 5598552 SGO_2083 Streptococcus gordonii str. Challis substr. CH1 putative transcriptional regulator YP_001451331.1 2147186 D 467705 CDS YP_001451332.1 157149861 5598145 2147779..2148345 1 NC_009785.1 identified by match to protein family HMM PF02525; quinone family NAD(P)H dehydrogenase 2148345 5598145 SGO_2084 Streptococcus gordonii str. Challis substr. CH1 quinone family NAD(P)H dehydrogenase YP_001451332.1 2147779 D 467705 CDS YP_001451333.1 157151345 5599753 complement(2148390..2149685) 1 NC_009785.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2149685 purB 5599753 purB Streptococcus gordonii str. Challis substr. CH1 adenylosuccinate lyase YP_001451333.1 2148390 R 467705 CDS YP_001451334.1 157150776 5598959 complement(2149756..2151009) 1 NC_009785.1 hypothetical protein 2151009 5598959 SGO_2086 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451334.1 2149756 R 467705 CDS YP_001451335.1 157150591 5598614 complement(2151141..2151368) 1 NC_009785.1 hypothetical protein 2151368 5598614 SGO_2087 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451335.1 2151141 R 467705 CDS YP_001451336.1 157150782 5598940 complement(2151388..2151663) 1 NC_009785.1 hypothetical protein 2151663 5598940 SGO_2088 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451336.1 2151388 R 467705 CDS YP_001451337.1 157150324 5598607 complement(2151653..2152744) 1 NC_009785.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 2152744 purK 5598607 purK Streptococcus gordonii str. Challis substr. CH1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001451337.1 2151653 R 467705 CDS YP_001451338.1 157149841 5599434 complement(2152731..2153219) 1 NC_009785.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 2153219 purE 5599434 purE Streptococcus gordonii str. Challis substr. CH1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001451338.1 2152731 R 467705 CDS YP_001451339.1 157150219 5599815 complement(2153239..2154432) 1 NC_009785.1 hypothetical protein 2154432 5599815 SGO_2091 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451339.1 2153239 R 467705 CDS YP_001451340.1 157150927 5599326 complement(2154492..2155751) 1 NC_009785.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2155751 purD 5599326 purD Streptococcus gordonii str. Challis substr. CH1 phosphoribosylamine--glycine ligase YP_001451340.1 2154492 R 467705 CDS YP_001451341.1 157151371 5598318 complement(2155845..2156009) 1 NC_009785.1 hypothetical protein 2156009 5598318 SGO_2093 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451341.1 2155845 R 467705 CDS YP_001451342.1 157151176 5599630 2155996..2157645 1 NC_009785.1 identified by match to protein family HMM PF05257; match to protein family HMM PF08481; general stress protein GSP-781 2157645 5599630 SGO_2094 Streptococcus gordonii str. Challis substr. CH1 general stress protein GSP-781 YP_001451342.1 2155996 D 467705 CDS YP_001451343.1 157151260 5597819 complement(2157578..2157736) 1 NC_009785.1 ComX 2157736 comX 5597819 comX Streptococcus gordonii str. Challis substr. CH1 ComX YP_001451343.1 2157578 R 467705 CDS YP_001451344.1 157149748 5599541 complement(2157764..2159122) 1 NC_009785.1 identified by match to protein family HMM TIGR01000; transport protein ComB 2159122 comB 5599541 comB Streptococcus gordonii str. Challis substr. CH1 transport protein ComB YP_001451344.1 2157764 R 467705 CDS YP_001451345.1 157150228 5599780 complement(2159132..2161285) 1 NC_009785.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193; ATP-binding transport protein ComA 2161285 comA 5599780 comA Streptococcus gordonii str. Challis substr. CH1 ATP-binding transport protein ComA YP_001451345.1 2159132 R 467705 CDS YP_001451346.1 157150371 5599615 complement(2161739..2162350) 1 NC_009785.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2162350 rpsD 5599615 rpsD Streptococcus gordonii str. Challis substr. CH1 30S ribosomal protein S4 YP_001451346.1 2161739 R 467705 CDS YP_001451347.1 157150829 5599362 complement(2162616..2163338) 1 NC_009785.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2163338 5599362 SGO_2099 Streptococcus gordonii str. Challis substr. CH1 ABC transporter ATP-binding protein YP_001451347.1 2162616 R 467705 CDS YP_001451348.1 157149995 5598516 complement(2163338..2164336) 1 NC_009785.1 identified by match to protein family HMM PF09084; ABC transporter substrate-binding protein 2164336 5598516 SGO_2100 Streptococcus gordonii str. Challis substr. CH1 ABC transporter substrate-binding protein YP_001451348.1 2163338 R 467705 CDS YP_001451349.1 157149960 5599667 complement(2164380..2165123) 1 NC_009785.1 identified by match to protein family HMM PF00528; permease 2165123 5599667 SGO_2101 Streptococcus gordonii str. Challis substr. CH1 permease YP_001451349.1 2164380 R 467705 CDS YP_001451350.1 157150907 5599826 complement(2165095..2165385) 1 NC_009785.1 hypothetical protein 2165385 5599826 SGO_2102 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451350.1 2165095 R 467705 CDS YP_001451351.1 157150408 5598358 complement(2165725..2166384) 1 NC_009785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase 2166384 5598358 SGO_2103 Streptococcus gordonii str. Challis substr. CH1 HAD superfamily hydrolase YP_001451351.1 2165725 R 467705 CDS YP_001451352.1 157151659 5599281 complement(2166463..2167320) 1 NC_009785.1 identified by match to protein family HMM TIGR03064; sortase 2167320 srtB 5599281 srtB Streptococcus gordonii str. Challis substr. CH1 sortase YP_001451352.1 2166463 R 467705 CDS YP_001451353.1 157150558 5598407 complement(2167409..2167996) 1 NC_009785.1 identified by similarity to GB:AAC38579.1; amylase-binding protein AbpA 2167996 abpA 5598407 abpA Streptococcus gordonii str. Challis substr. CH1 amylase-binding protein AbpA YP_001451353.1 2167409 R 467705 CDS YP_001451354.1 157149947 5599003 complement(2168213..2169178) 1 NC_009785.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2169178 5599003 SGO_2106 Streptococcus gordonii str. Challis substr. CH1 ribose-phosphate pyrophosphokinase YP_001451354.1 2168213 R 467705 CDS YP_001451355.1 157151419 5598201 complement(2169338..2170528) 1 NC_009785.1 identified by match to protein family HMM PF05257; general stress protein GSP-781 2170528 5598201 SGO_2107 Streptococcus gordonii str. Challis substr. CH1 general stress protein GSP-781 YP_001451355.1 2169338 R 467705 CDS YP_001451356.1 157150702 5597751 complement(2171130..2171993) 1 NC_009785.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2171993 mreC 5597751 mreC Streptococcus gordonii str. Challis substr. CH1 rod shape-determining protein MreC YP_001451356.1 2171130 R 467705 CDS YP_001451357.1 157151030 5599844 complement(2178847..2179329) 1 NC_009785.1 competence specific sigma factor ComR2 2179329 comR2 5599844 comR2 Streptococcus gordonii str. Challis substr. CH1 competence specific sigma factor ComR2 YP_001451357.1 2178847 R 467705 CDS YP_001451358.1 157151579 5598338 complement(2179860..2181842) 1 NC_009785.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein ftsH-like protein 2181842 5598338 SGO_2133 Streptococcus gordonii str. Challis substr. CH1 cell division protein ftsH-like protein YP_001451358.1 2179860 R 467705 CDS YP_001451359.1 157149744 5598556 complement(2181861..2182403) 1 NC_009785.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 2182403 hpt 5598556 hpt Streptococcus gordonii str. Challis substr. CH1 hypoxanthine phosphoribosyltransferase YP_001451359.1 2181861 R 467705 CDS YP_001451360.1 157150417 5599550 complement(2182408..2183685) 1 NC_009785.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 2183685 tilS 5599550 tilS Streptococcus gordonii str. Challis substr. CH1 tRNA(Ile)-lysidine synthetase YP_001451360.1 2182408 R 467705 CDS YP_001451361.1 157151309 5599263 complement(2183682..2184962) 1 NC_009785.1 hypothetical protein 2184962 5599263 SGO_2136 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451361.1 2183682 R 467705 CDS YP_001451362.1 157151678 5599789 complement(2184962..2185078) 1 NC_009785.1 hypothetical protein 2185078 5599789 SGO_2137 Streptococcus gordonii str. Challis substr. CH1 hypothetical protein YP_001451362.1 2184962 R 467705 CDS YP_001451363.1 157149916 5599539 complement(2185081..2185449) 1 NC_009785.1 identified by match to protein family HMM PF04977; septum formation initiator family protein 2185449 5599539 SGO_2138 Streptococcus gordonii str. Challis substr. CH1 septum formation initiator family protein YP_001451363.1 2185081 R 467705 CDS YP_001451364.1 157150502 5599545 complement(2185442..2185708) 1 NC_009785.1 identified by match to protein family HMM PF01479; S4 RNA-binding domain-containing protein 2185708 5599545 SGO_2139 Streptococcus gordonii str. Challis substr. CH1 S4 RNA-binding domain-containing protein YP_001451364.1 2185442 R 467705 CDS YP_001451365.1 157150453 5599105 complement(2185774..2189277) 1 NC_009785.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 2189277 5599105 SGO_2140 Streptococcus gordonii str. Challis substr. CH1 transcription-repair coupling factor YP_001451365.1 2185774 R 467705 CDS YP_001451366.1 157151158 5599194 complement(2189270..2189839) 1 NC_009785.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2189839 pth 5599194 pth Streptococcus gordonii str. Challis substr. CH1 peptidyl-tRNA hydrolase YP_001451366.1 2189270 R 467705 CDS YP_001451367.1 157151596 5597851 complement(2189913..2191028) 1 NC_009785.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2191028 5597851 SGO_2142 Streptococcus gordonii str. Challis substr. CH1 GTP-dependent nucleic acid-binding protein EngD YP_001451367.1 2189913 R 467705 CDS YP_001451368.1 157150731 5599882 complement(2191350..2192117) 1 NC_009785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; competence response regulator ComE 2192117 comE 5599882 comE Streptococcus gordonii str. Challis substr. CH1 competence response regulator ComE YP_001451368.1 2191350 R 467705 CDS YP_001451369.1 157150265 5598689 complement(2192114..2193475) 1 NC_009785.1 identified by match to protein family HMM PF02518; histidine protein kinase ComD 2193475 comD 5598689 comD Streptococcus gordonii str. Challis substr. CH1 histidine protein kinase ComD YP_001451369.1 2192114 R 467705 CDS YP_001451370.1 157151683 5599586 complement(2193491..2193643) 1 NC_009785.1 identified by match to protein family HMM PF03047; match to protein family HMM TIGR01847; competence factor-like protein ComC 2193643 comC 5599586 comC Streptococcus gordonii str. Challis substr. CH1 competence factor-like protein ComC YP_001451370.1 2193491 R 467705 CDS YP_001451371.1 157151670 5599857 complement(2193929..2194408) 1 NC_009785.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2194408 5599857 SGO_2149 Streptococcus gordonii str. Challis substr. CH1 rRNA large subunit methyltransferase YP_001451371.1 2193929 R 467705 CDS YP_001451372.1 157151109 5599842 2194602..2195795 1 NC_009785.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 2195795 degP 5599842 degP Streptococcus gordonii str. Challis substr. CH1 serine protease YP_001451372.1 2194602 D 467705 CDS YP_001451373.1 157150241 5597930 2195861..2196625 1 NC_009785.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome segregation protein 2196625 spo0J 5597930 spo0J Streptococcus gordonii str. Challis substr. CH1 chromosome segregation protein YP_001451373.1 2195861 D 467705 CDS