-- dump date 20140620_082208 -- class Genbank::CDS -- table cds_note -- id note YP_001449323.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001449324.1 binds the polymerase to DNA and acts as a sliding clamp YP_001449325.1 identified by match to protein family HMM PF06107 YP_001449326.1 identified by match to protein family HMM PF06998 YP_001449328.1 identified by match to protein family HMM PF00005 YP_001449329.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001449330.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001449331.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001449332.1 identified by match to protein family HMM TIGR02988 YP_001449333.1 identified by match to protein family HMM PF05193 YP_001449334.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001449336.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001449337.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_001449338.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_001449339.1 identified by match to protein family HMM PF02361 YP_001449340.1 identified by match to protein family HMM PF01476; match to protein family HMM PF06737 YP_001449341.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_001449342.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_001449343.1 identified by match to protein family HMM PF01476 YP_001449344.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001449345.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001449347.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001449348.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001449349.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001449350.1 unwinds double stranded DNA YP_001449351.1 identified by match to protein family HMM PF06257 YP_001449352.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci YP_001449353.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001449354.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001449355.1 identified by match to protein family HMM PF00550 YP_001449356.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001449357.1 identified by match to protein family HMM PF01965; match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_001449358.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001449359.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001449360.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001449362.1 involved in de novo purine biosynthesis YP_001449364.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001449365.1 identified by match to protein family HMM PF01301; match to protein family HMM PF02449 YP_001449366.1 identified by match to protein family HMM PF03830 YP_001449367.1 identified by match to protein family HMM PF03609 YP_001449368.1 identified by match to protein family HMM PF03613 YP_001449369.1 identified by match to protein family HMM PF03610 YP_001449370.1 identified by match to protein family HMM PF01380 YP_001449371.1 identified by match to protein family HMM PF01263 YP_001449374.1 identified by match to protein family HMM PF03551 YP_001449376.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_001449377.1 identified by match to protein family HMM PF03062 YP_001449378.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_001449379.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_001449380.1 identified by match to protein family HMM PF00583 YP_001449381.1 identified by match to protein family HMM PF06013 YP_001449386.1 identified by match to protein family HMM PF01580 YP_001449405.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449407.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001449409.1 identified by match to protein family HMM PF07690 YP_001449410.1 identified by match to protein family HMM PF00440 YP_001449411.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001449412.1 identified by match to protein family HMM PF00440 YP_001449413.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001449417.1 identified by match to protein family HMM PF02016 YP_001449418.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001449420.1 identified by match to protein family HMM PF07972 YP_001449421.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_001449422.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001449424.1 identified by match to protein family HMM PF00528 YP_001449425.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154 YP_001449426.1 identified by match to protein family HMM PF01547 YP_001449427.1 amylomaltase; acts to release glucose from maltodextrins YP_001449428.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001449429.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167 YP_001449430.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001449431.1 identified by match to protein family HMM PF06042 YP_001449432.1 identified by match to protein family HMM PF01451 YP_001449433.1 identified by match to protein family HMM PF02493 YP_001449434.1 identified by match to protein family HMM PF01757 YP_001449435.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_001449438.1 identified by match to protein family HMM TIGR01847 YP_001449440.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_001449441.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_001449442.1 identified by match to protein family HMM PF01547 YP_001449443.1 identified by match to protein family HMM PF00528 YP_001449444.1 identified by match to protein family HMM PF00528 YP_001449445.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_001449446.1 identified by match to protein family HMM PF00701 YP_001449447.1 identified by match to protein family HMM PF00480 YP_001449449.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001449451.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_001449452.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001449454.1 identified by match to protein family HMM PF01992 YP_001449455.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001449456.1 identified by match to protein family HMM PF00583 YP_001449457.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001449458.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001449459.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001449460.1 identified by match to protein family HMM PF01476 YP_001449461.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001449462.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001449463.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001449466.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001449467.1 identified by match to protein family HMM PF02629 YP_001449471.1 identified by match to protein family HMM PF01120 YP_001449472.1 identified by match to protein family HMM PF06161 YP_001449473.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001449474.1 identified by match to protein family HMM PF00383 YP_001449475.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001449479.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_001449480.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001449481.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001449482.1 identified by match to protein family HMM PF01694 YP_001449483.1 identified by match to protein family HMM PF03577 YP_001449484.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001449485.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001449486.1 ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001449487.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter YP_001449488.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_001449489.1 identified by match to protein family HMM PF00293 YP_001449490.1 catalyzes the formation of dUMP from dUTP YP_001449492.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001449493.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266 YP_001449494.1 identified by match to protein family HMM PF00484 YP_001449495.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001449496.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001449497.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001449499.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001449500.1 identified by match to protein family HMM PF02096 YP_001449501.1 identified by match to protein family HMM PF01424 YP_001449504.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001449509.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001449510.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_001449511.1 identified by match to protein family HMM PF00106 YP_001449514.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001449516.1 identified by match to protein family HMM PF02517 YP_001449517.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001449518.1 identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_001449519.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_001449520.1 identified by match to protein family HMM PF02646 YP_001449521.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_001449522.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_001449524.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001449525.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001449526.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001449527.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001449528.1 identified by match to protein family HMM PF00746; match to protein family HMM PF03644; match to protein family HMM PF04650; match to protein family HMM PF07523; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001449529.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001449530.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167 YP_001449531.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167 YP_001449532.1 identified by match to protein family HMM PF01476; match to protein family HMM PF05257 YP_001449534.1 identified by match to protein family HMM PF00376 YP_001449535.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_001449536.1 identified by match to protein family HMM PF00583 YP_001449537.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_001449538.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001449539.1 identified by match to protein family HMM PF07288 YP_001449540.1 identified by match to protein family HMM PF00814 YP_001449541.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001449542.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001449543.1 identified by match to protein family HMM PF03591 YP_001449544.1 identified by match to protein family HMM PF05437 YP_001449545.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001449547.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278 YP_001449548.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001449549.1 identified by match to protein family HMM PF04394; match to protein family HMM PF08279 YP_001449550.1 identified by match to protein family HMM PF03009 YP_001449551.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001449553.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_001449554.1 identified by match to protein family HMM PF00230 YP_001449557.1 identified by match to protein family HMM PF00144 YP_001449558.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549 YP_001449559.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240 YP_001449560.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220 YP_001449561.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001449562.1 identified by match to protein family HMM TIGR00532 YP_001449563.1 identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835 YP_001449565.1 identified by match to protein family HMM PF06738 YP_001449566.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_001449567.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001449570.1 identified by match to protein family HMM PF02517 YP_001449571.1 identified by match to protein family HMM PF00440 YP_001449573.1 identified by match to protein family HMM TIGR01448 YP_001449574.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001449575.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001449578.1 identified by match to protein family HMM PF02674 YP_001449579.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_001449580.1 identified by match to protein family HMM PF00583 YP_001449581.1 identified by match to protein family HMM PF03577 YP_001449582.1 identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068 YP_001449584.1 identified by match to protein family HMM PF00126 YP_001449586.1 identified by match to protein family HMM PF00324 YP_001449587.1 identified by match to protein family HMM PF00924 YP_001449589.1 involved in the import of serine and threonine coupled with the import of sodium YP_001449592.1 identified by match to protein family HMM PF08240 YP_001449593.1 identified by match to protein family HMM PF00440 YP_001449594.1 identified by match to protein family HMM PF00583 YP_001449595.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001449596.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_001449597.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_001449599.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001449600.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001449603.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_001449604.1 identified by match to protein family HMM PF00232 YP_001449605.1 identified by match to protein family HMM PF00488 YP_001449606.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449607.1 identified by similarity to GB:AAM99985.1; match to protein family HMM PF00657 YP_001449608.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698 YP_001449610.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001449611.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720 YP_001449612.1 identified by match to protein family HMM PF00903 YP_001449613.1 identified by match to protein family HMM PF00005 YP_001449616.1 required for arbutin uptake and metabolism YP_001449617.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001449618.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001449620.1 identified by match to protein family HMM PF00005 YP_001449622.1 identified by match to protein family HMM PF00005 YP_001449625.1 identified by match to protein family HMM PF00005 YP_001449626.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 YP_001449629.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001449630.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001449631.1 identified by match to protein family HMM PF03894 YP_001449632.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449633.1 identified by match to protein family HMM PF00300 YP_001449634.1 identified by match to protein family HMM PF00300 YP_001449635.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001449636.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001449639.1 identified by match to protein family HMM PF00535 YP_001449640.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001449641.1 identified by match to protein family HMM PF07690 YP_001449642.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001449646.1 identified by match to protein family HMM PF00534 YP_001449647.1 putative ortholog of TM1408 YP_001449652.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001449653.1 identified by match to protein family HMM PF00561 YP_001449656.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001449657.1 identified by match to protein family HMM PF00230 YP_001449659.1 identified by match to protein family HMM PF07366 YP_001449661.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_001449662.1 identified by match to protein family HMM PF07690 YP_001449663.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001449664.1 identified by match to protein family HMM TIGR01172 YP_001449668.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001449669.1 identified by match to protein family HMM PF00636 YP_001449671.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_001449673.1 identified by match to protein family HMM PF06081 YP_001449674.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001449676.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001449677.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001449678.1 forms a direct contact with the tRNA during translation YP_001449679.1 identified by match to protein family HMM PF00589 YP_001449680.1 identified by match to protein family HMM PF01381 YP_001449682.1 identified by match to protein family HMM TIGR01714 YP_001449685.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779 YP_001449686.1 identified by match to protein family HMM PF01022 YP_001449687.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053 YP_001449688.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001449689.1 identified by match to protein family HMM PF01381 YP_001449690.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_001449691.1 identified by match to protein family HMM PF03547 YP_001449692.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001449693.1 identified by match to protein family HMM PF00005 YP_001449695.1 identified by match to protein family HMM PF05532 YP_001449696.1 identified by match to protein family HMM PF04239 YP_001449699.1 identified by match to protein family HMM PF00375 YP_001449701.1 identified by match to protein family HMM PF00251; match to protein family HMM PF00746; match to protein family HMM PF02368; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF08244; match to protein family HMM TIGR01167 YP_001449702.1 identified by match to protein family HMM PF00376 YP_001449703.1 identified by match to protein family HMM PF01113 YP_001449704.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_001449705.1 ACT domain-containing protein YP_001449706.1 identified by match to protein family HMM PF05167 YP_001449707.1 identified by match to protein family HMM PF00300 YP_001449708.1 identified by match to protein family HMM PF00300 YP_001449709.1 identified by match to protein family HMM PF02557 YP_001449711.1 identified by match to protein family HMM PF01381 YP_001449712.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551 YP_001449714.1 identified by match to protein family HMM PF00005 YP_001449716.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001449717.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001449718.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001449719.1 identified by match to protein family HMM PF01965 YP_001449720.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001449721.1 identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001449722.1 identified by match to protein family HMM PF00293 YP_001449723.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001449724.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001449725.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_001449727.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_001449728.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001449729.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_001449731.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001449732.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001449733.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001449734.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001449735.1 catalyzes branch migration in Holliday junction intermediates YP_001449737.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001449738.1 identified by match to protein family HMM PF02302 YP_001449739.1 identified by match to protein family HMM PF04215 YP_001449740.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_001449741.1 identified by match to protein family HMM PF00710 YP_001449742.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449743.1 identified by match to protein family HMM PF00582 YP_001449745.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_001449746.1 identified by match to protein family HMM TIGR01167 YP_001449747.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001449748.1 identified by match to protein family HMM PF00857 YP_001449750.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001449751.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001449752.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001449753.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001449756.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001449757.1 identified by match to protein family HMM PF00892 YP_001449758.1 identified by match to protein family HMM PF09335 YP_001449760.1 identified by match to protein family HMM TIGR01549; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_001449761.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_001449762.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_001449763.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001449764.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_001449765.1 identified by match to protein family HMM PF00857 YP_001449766.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_001449767.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001449768.1 identified by match to protein family HMM PF05636 YP_001449770.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001449772.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001449773.1 ABC transporter protein SP0148; identified by match to protein family HMM PF00497 YP_001449774.1 identified by match to protein family HMM PF03180 YP_001449775.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_001449776.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein SP0151 YP_001449777.1 identified by match to protein family HMM PF00528 YP_001449779.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001449780.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001449781.1 identified by match to protein family HMM TIGR02185 YP_001449782.1 identified by match to protein family HMM PF02361 YP_001449783.1 identified by match to protein family HMM PF00005 YP_001449784.1 identified by match to protein family HMM PF01887; match to protein family HMM TIGR03304 YP_001449785.1 identified by match to protein family HMM PF07155 YP_001449787.1 identified by match to protein family HMM PF01381 YP_001449790.1 identified by match to protein family HMM PF02517 YP_001449792.1 identified by match to protein family HMM PF00581 YP_001449793.1 identified by match to protein family HMM PF01473 YP_001449794.1 identified by match to protein family HMM PF01473 YP_001449795.1 identified by match to protein family HMM PF00165 YP_001449796.1 identified by match to protein family HMM PF06983 YP_001449798.1 identified by match to protein family HMM PF01965 YP_001449800.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001449801.1 identified by match to protein family HMM PF00072 YP_001449802.1 identified by match to protein family HMM PF04607 YP_001449804.1 ABC transporter; identified by match to protein family HMM PF00005 YP_001449805.1 identified by match to protein family HMM PF02361 YP_001449806.1 identified by match to protein family HMM PF02517 YP_001449807.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001449808.1 identified by match to protein family HMM PF07690 YP_001449809.1 identified by match to protein family HMM PF00440 YP_001449810.1 identified by match to protein family HMM PF04011 YP_001449811.1 putative metalloprotease YP_001449812.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_001449813.1 identified by match to protein family HMM PF01473; match to protein family HMM PF02324 YP_001449814.1 identified by match to protein family HMM PF07690 YP_001449816.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_001449817.1 identified by match to protein family HMM PF02620 YP_001449818.1 identified by match to protein family HMM PF01145; match to protein family HMM PF03149 YP_001449819.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_001449820.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001449821.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003 YP_001449822.1 identified by match to protein family HMM PF03372 YP_001449824.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001449825.1 identified by match to protein family HMM PF07261 YP_001449826.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_001449827.1 identified by match to protein family HMM PF00881 YP_001449828.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001449829.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_001449831.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001449832.1 identified by match to protein family HMM PF00583 YP_001449833.1 identified by match to protein family HMM PF00583 YP_001449834.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001449835.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001449837.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_001449838.1 catalyzes the hydrolysis of acylphosphate YP_001449839.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_001449840.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001449841.1 identified by match to protein family HMM PF01027 YP_001449842.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_001449843.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001449844.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001449845.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_001449846.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449847.1 identified by match to protein family HMM PF07099 YP_001449848.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001449849.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001449850.1 identified by match to protein family HMM PF00583 YP_001449851.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001449853.1 identified by match to protein family HMM PF01230 YP_001449854.1 identified by match to protein family HMM PF00005; ATP-binding protein SP0522 YP_001449855.1 identified by match to protein family HMM PF05975 YP_001449856.1 identified by match to protein family HMM PF01636 YP_001449857.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001449858.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001449859.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001449860.1 identified by match to protein family HMM PF04296 YP_001449861.1 identified by match to protein family HMM PF01248 YP_001449862.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001449863.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001449864.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001449865.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001449868.1 identified by match to protein family HMM PF00248 YP_001449870.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_001449872.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001449873.1 identified by match to protein family HMM PF01420 YP_001449876.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 YP_001449878.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114; match to protein family HMM TIGR02607 YP_001449880.1 identified by match to protein family HMM TIGR02328 YP_001449881.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_001449882.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM PF07554; match to protein family HMM TIGR01168 YP_001449884.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001449885.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001449886.1 identified by match to protein family HMM PF05979 YP_001449888.1 identified by match to protein family HMM PF01381 YP_001449889.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001449890.1 identified by match to protein family HMM TIGR02209 YP_001449891.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_001449892.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001449893.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001449894.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001449895.1 identified by match to protein family HMM PF00005 YP_001449897.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_001449898.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001449899.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001449900.1 identified by match to protein family HMM PF00583 YP_001449901.1 identified by match to protein family HMM PF03051 YP_001449902.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001449903.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_001449904.1 identified by match to protein family HMM PF06908 YP_001449905.1 identified by match to protein family HMM PF05103 YP_001449906.1 identified by match to protein family HMM PF01170 YP_001449908.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001449909.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319 YP_001449910.1 Essential for recycling GMP and indirectly, cGMP YP_001449911.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001449912.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001449913.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001449914.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001449915.1 identified by match to protein family HMM PF00481 YP_001449916.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793 YP_001449918.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001449919.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_001449920.1 identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001449921.1 identified by match to protein family HMM PF00575 YP_001449922.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001449923.1 identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_001449924.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001449926.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001449928.1 identified by match to protein family HMM PF04167 YP_001449929.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001449931.1 identified by match to protein family HMM PF01636 YP_001449932.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001449933.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_001449934.1 identified by match to protein family HMM PF01266 YP_001449935.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001449936.1 identified by match to protein family HMM PF05043 YP_001449937.1 identified by match to protein family HMM PF08984 YP_001449938.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282; match to protein family HMM PF08448 YP_001449939.1 identified by match to protein family HMM PF08930 YP_001449940.1 identified by match to protein family HMM PF00583 YP_001449942.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001449944.1 identified by match to protein family HMM PF02518 YP_001449946.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001449950.1 identified by match to protein family HMM PF00817 YP_001449951.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381 YP_001449953.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001449954.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001449956.1 identified by match to protein family HMM PF06265 YP_001449957.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001449958.1 identified by match to protein family HMM PF04892 YP_001449959.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001449960.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_001449961.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001449962.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001449963.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001449964.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001449965.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001449966.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001449967.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001449968.1 identified by match to protein family HMM PF00210 YP_001449969.1 identified by match to protein family HMM PF06014 YP_001449970.1 identified by match to protein family HMM PF00581 YP_001449971.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001449972.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001449974.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001449975.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001449976.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_001449977.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001449978.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001449979.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001449980.1 identified by match to protein family HMM PF04472 YP_001449981.1 identified by match to protein family HMM PF02325 YP_001449982.1 identified by match to protein family HMM PF01479 YP_001449983.1 identified by match to protein family HMM PF05103 YP_001449984.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_001449985.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01978 YP_001449986.1 identified by match to protein family HMM PF08860 YP_001449987.1 identified by match to protein family HMM PF00293 YP_001449988.1 identified by match to protein family HMM PF08279 YP_001449990.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001449991.1 identified by match to protein family HMM PF08796 YP_001449992.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001449993.1 identified by match to protein family HMM PF08282 YP_001449994.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_001449995.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001449996.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001449997.1 identified by match to protein family HMM PF00348 YP_001449998.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_001449999.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_001450000.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001450001.1 identified by match to protein family HMM PF00149 YP_001450002.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001450003.1 identified by match to protein family HMM PF00216 YP_001450005.1 identified by match to protein family HMM PF01475 YP_001450006.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001450007.1 identified by match to protein family HMM PF06855 YP_001450008.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562 YP_001450009.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_001450010.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_001450011.1 identified by match to protein family HMM PF00583 YP_001450012.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_001450013.1 identified by match to protein family HMM PF01219 YP_001450014.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001450015.1 identified by match to protein family HMM PF00561 YP_001450016.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001450017.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001450018.1 identified by match to protein family HMM PF07690 YP_001450019.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001450020.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001450021.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001450022.1 identified by match to protein family HMM PF03577 YP_001450023.1 with TehA confers resistance to tellurite YP_001450025.1 identified by match to protein family HMM PF03577 YP_001450027.1 identified by match to protein family HMM PF00440 YP_001450029.1 identified by match to protein family HMM PF00005 YP_001450030.1 identified by match to protein family HMM PF02687 YP_001450031.1 identified by match to protein family HMM PF00149 YP_001450032.1 identified by match to protein family HMM PF02082 YP_001450034.1 identified by match to protein family HMM PF04024 YP_001450035.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001450036.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001450037.1 identified by match to protein family HMM PF06103 YP_001450041.1 identified by match to protein family HMM PF01136 YP_001450042.1 identified by match to protein family HMM PF01136 YP_001450045.1 identified by match to protein family HMM PF02632 YP_001450047.1 identified by match to protein family HMM PF04199 YP_001450048.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_001450049.1 identified by match to protein family HMM TIGR01730 YP_001450050.1 identified by match to protein family HMM PF00005 YP_001450051.1 identified by match to protein family HMM PF02687 YP_001450052.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001450053.1 identified by match to protein family HMM PF00300 YP_001450054.1 identified by match to protein family HMM PF04073 YP_001450055.1 identified by match to protein family HMM PF04018 YP_001450056.1 identified by match to protein family HMM PF01183 YP_001450057.1 identified by match to protein family HMM PF00255 YP_001450058.1 identified by match to protein family HMM PF01098 YP_001450059.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001450060.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001450061.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001450062.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001450064.1 identified by match to protein family HMM PF01223 YP_001450066.1 identified by match to protein family HMM PF01497 YP_001450068.1 identified by match to protein family HMM PF00005 YP_001450069.1 identified by match to protein family HMM PF01032 YP_001450070.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001450072.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_001450073.1 identified by match to protein family HMM PF00534 YP_001450074.1 identified by match to protein family HMM PF00534 YP_001450077.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001450078.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001450079.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001450080.1 identified by match to protein family HMM PF00753 YP_001450081.1 identified by match to protein family HMM PF04304 YP_001450082.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001450083.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_001450084.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001450085.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001450086.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001450087.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001450088.1 ABC transporter; identified by match to protein family HMM PF09323 YP_001450089.1 identified by match to protein family HMM PF03773 YP_001450091.1 identified by match to protein family HMM PF00575 YP_001450092.1 identified by match to protein family HMM PF03926 YP_001450093.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_001450094.1 identified by match to protein family HMM PF00756 YP_001450095.1 identified by match to protein family HMM PF00413 YP_001450097.1 identified by match to protein family HMM PF00005 YP_001450099.1 identified by match to protein family HMM PF01522 YP_001450100.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001450101.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001450103.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001450104.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_001450105.1 identified by match to protein family HMM PF00528 YP_001450106.1 identified by match to protein family HMM PF00528 YP_001450107.1 identified by match to protein family HMM PF01547 YP_001450109.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001450110.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001450111.1 identified by match to protein family HMM PF03618 YP_001450112.1 identified by match to protein family HMM PF06874 YP_001450113.1 identified by match to protein family HMM PF00266 YP_001450114.1 Required for the synthesis of the thiazole moiety YP_001450117.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001450118.1 identified by match to protein family HMM PF04327 YP_001450119.1 involved in the peptidyltransferase reaction during translation YP_001450120.1 identified by match to protein family HMM PF00581 YP_001450122.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001450123.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001450125.1 identified by match to protein family HMM PF03692 YP_001450126.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001450128.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_001450129.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001450132.1 identified by match to protein family HMM PF00149 YP_001450134.1 identified by match to protein family HMM PF00881 YP_001450135.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_001450136.1 identified by match to protein family HMM PF03167 YP_001450137.1 identified by match to protein family HMM PF04073 YP_001450138.1 identified by match to protein family HMM PF04993 YP_001450139.1 identified by match to protein family HMM PF01047 YP_001450140.1 identified by match to protein family HMM PF08240 YP_001450141.1 identified by match to protein family HMM PF00581 YP_001450142.1 identified by match to protein family HMM PF02557 YP_001450144.1 identified by match to protein family HMM PF01473 YP_001450145.1 identified by match to protein family HMM PF00188 YP_001450146.1 identified by match to protein family HMM PF00188 YP_001450147.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_001450148.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001450149.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_001450150.1 identified by match to protein family HMM PF01594 YP_001450151.1 identified by similarity to GB:AAO81340.1; match to protein family HMM PF00515 YP_001450152.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_001450153.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001450154.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_001450155.1 identified by match to protein family HMM PF04392 YP_001450156.1 identified by match to protein family HMM PF02653 YP_001450157.1 identified by match to protein family HMM PF00005 YP_001450158.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001450159.1 identified by match to protein family HMM PF00583 YP_001450160.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001450162.1 identified by match to protein family HMM PF08349 YP_001450164.1 identified by match to protein family HMM PF01381 YP_001450173.1 identified by match to protein family HMM PF02687 YP_001450174.1 identified by match to protein family HMM PF00005 YP_001450178.1 identified by match to protein family HMM TIGR01716 YP_001450179.1 identified by match to protein family HMM PF07690 YP_001450181.1 identified by match to protein family HMM PF07685 YP_001450182.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_001450183.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_001450184.1 identified by match to protein family HMM PF07949 YP_001450185.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001450186.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167 YP_001450189.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001450191.1 identified by match to protein family HMM PF04229 YP_001450192.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001450193.1 identified by match to protein family HMM PF03575 YP_001450194.1 identified by match to protein family HMM PF01381 YP_001450195.1 identified by match to protein family HMM PF00561 YP_001450196.1 identified by match to protein family HMM PF01590 YP_001450197.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001450199.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_001450200.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001450202.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001450203.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001450204.1 identified by match to protein family HMM PF06961 YP_001450205.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001450206.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001450208.1 identified by match to protein family HMM PF01047 YP_001450209.1 identified by match to protein family HMM PF00005 YP_001450210.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_001450212.1 identified by match to protein family HMM PF02361 YP_001450213.1 identified by match to protein family HMM PF00005 YP_001450214.1 identified by match to protein family HMM PF00005 YP_001450217.1 near IS element with potential frameshift YP_001450220.1 identified by match to protein family HMM PF06430 YP_001450221.1 identified by match to protein family HMM PF00440 YP_001450222.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001450223.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_001450224.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_001450225.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001450226.1 identified by match to protein family HMM PF01864 YP_001450227.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_001450228.1 identified by match to protein family HMM PF01066 YP_001450229.1 identified by match to protein family HMM PF02666 YP_001450230.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_001450231.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_001450233.1 identified by match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01168 YP_001450235.1 identified by match to protein family HMM PF00005 YP_001450236.1 identified by match to protein family HMM PF02687 YP_001450237.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343 YP_001450239.1 identified by match to protein family HMM PF01522 YP_001450240.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001450241.1 identified by match to protein family HMM PF01408 YP_001450242.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001450243.1 identified by match to protein family HMM PF06912 YP_001450244.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001450245.1 identified by match to protein family HMM PF03668 YP_001450246.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_001450247.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_001450250.1 identified by match to protein family HMM PF03932 YP_001450251.1 identified by match to protein family HMM PF04237 YP_001450252.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450253.1 ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450254.1 identified by match to protein family HMM PF00392 YP_001450255.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_001450257.1 identified by similarity to GB:BAA97453.1; match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_001450258.1 identified by match to protein family HMM PF08759 YP_001450260.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001450264.1 identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918 YP_001450265.1 identified by match to protein family HMM TIGR02919 YP_001450268.1 identified by match to protein family HMM PF02645 YP_001450269.1 identified by match to protein family HMM PF00440 YP_001450270.1 identified by match to protein family HMM PF00383 YP_001450271.1 ABC transporter; identified by match to protein family HMM PF00497 YP_001450272.1 ABC transporterATP-binding protein; identified by match to protein family HMM PF00005 YP_001450273.1 ABC transporter; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001450274.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001450276.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001450277.1 identified by match to protein family HMM PF08279 YP_001450279.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001450281.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001450282.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_001450284.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001450285.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_001450286.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001450288.1 identified by match to protein family HMM PF01966 YP_001450289.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001450290.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001450291.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001450292.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001450293.1 YghU; B2989; one of eight putative glutathione transferases from E. coli YP_001450294.1 identified by match to protein family HMM PF04816 YP_001450295.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001450296.1 identified by match to protein family HMM PF01266 YP_001450297.1 identified by match to protein family HMM PF00293 YP_001450298.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001450299.1 identified by match to protein family HMM PF00908 YP_001450300.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001450301.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001450302.1 identified by match to protein family HMM PF00535 YP_001450305.1 identified by match to protein family HMM PF00535 YP_001450308.1 identified by match to protein family HMM PF00535 YP_001450309.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_001450310.1 identified by match to protein family HMM PF09314 YP_001450311.1 identified by match to protein family HMM PF00535 YP_001450312.1 identified by match to protein family HMM PF01061 YP_001450313.1 identified by match to protein family HMM PF00005 YP_001450314.1 identified by match to protein family HMM PF00535 YP_001450315.1 identified by match to protein family HMM PF05045 YP_001450316.1 identified by match to protein family HMM PF00884 YP_001450320.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001450321.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001450322.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001450323.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001450324.1 identified by match to protein family HMM PF00903 YP_001450325.1 identified by match to protein family HMM PF00005 YP_001450326.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001450327.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001450329.1 identified by match to protein family HMM PF00583 YP_001450330.1 identified by match to protein family HMM PF08002 YP_001450333.1 identified by match to protein family HMM PF00293 YP_001450334.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_001450337.1 identified by match to protein family HMM PF00561 YP_001450338.1 tRNA pseudouridine 55synthase; Psi55 synthase; Pseudouridine synthase; Uracilhydrolyase; catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001450339.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001450340.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_001450341.1 identified by match to protein family HMM PF05256 YP_001450342.1 identified by match to protein family HMM PF00459 YP_001450343.1 identified by match to protein family HMM PF01189 YP_001450344.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_001450345.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_001450346.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001450347.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001450348.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001450349.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001450358.1 identified by match to protein family HMM PF01433 YP_001450359.1 identified by match to protein family HMM PF02632 YP_001450361.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001450362.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001450363.1 identified by match to protein family HMM PF02558 YP_001450364.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001450365.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001450366.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001450367.1 MTS; identified by match to protein family HMM PF05175; Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyl-transferase C as well as other methyltransferases; pfam05175 YP_001450368.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_001450369.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001450370.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_001450371.1 identified by match to protein family HMM PF02608 YP_001450372.1 identified by match to protein family HMM PF00005 YP_001450373.1 identified by match to protein family HMM PF02653 YP_001450374.1 ABC transporter; identified by match to protein family HMM PF02653 YP_001450375.1 identified by match to protein family HMM PF00583 YP_001450376.1 identified by match to protein family HMM PF03595 YP_001450377.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001450378.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001450379.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001450385.1 identified by match to protein family HMM PF00106; match to protein family HMM PF03446; match to protein family HMM PF08659; match to protein family HMM TIGR02415 YP_001450386.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001450387.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001450388.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_001450389.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_001450391.1 identified by similarity to SP:P39765 YP_001450392.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001450393.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001450396.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001450397.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001450398.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001450399.1 identified by match to protein family HMM PF00188 YP_001450400.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001450401.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001450402.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_001450403.1 identified by match to protein family HMM PF06619 YP_001450404.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001450405.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001450406.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_001450407.1 identified by match to protein family HMM PF00005 YP_001450408.1 identified by match to protein family HMM PF04326 YP_001450409.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001450410.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001450411.1 identified by match to protein family HMM PF04297; match to protein family HMM PF08281 YP_001450412.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001450413.1 identified by match to protein family HMM PF06028 YP_001450415.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_001450416.1 identified by match to protein family HMM PF00005; ABC transporter YP_001450417.1 identified by match to protein family HMM TIGR01654 YP_001450418.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001450419.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001450420.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain YP_001450421.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001450422.1 identified by match to protein family HMM PF00676 YP_001450424.1 identified by match to protein family HMM PF00756 YP_001450425.1 identified by match to protein family HMM PF00756 YP_001450426.1 identified by match to protein family HMM PF01226 YP_001450427.1 identified by match to protein family HMM PF01832 YP_001450428.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001450429.1 binds and unfolds substrates as part of the ClpXP protease YP_001450430.1 identified by match to protein family HMM PF00186 YP_001450432.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001450433.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_001450434.1 identified by match to protein family HMM PF06028 YP_001450435.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001450438.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001450439.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_001450440.1 identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387 YP_001450441.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001450442.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001450443.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_001450444.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001450445.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001450446.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_001450447.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001450448.1 identified by match to protein family HMM PF02416 YP_001450449.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_001450450.1 identified by match to protein family HMM PF03239 YP_001450451.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413 YP_001450452.1 identified by match to protein family HMM PF04302 YP_001450453.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080 YP_001450454.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001450455.1 identified by match to protein family HMM PF02424 YP_001450456.1 identified by match to protein family HMM PF03358 YP_001450457.1 identified by match to protein family HMM PF03358 YP_001450458.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001450460.1 identified by match to protein family HMM PF02683 YP_001450461.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580 YP_001450462.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001450463.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_001450464.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001450466.1 identified by match to protein family HMM PF02683 YP_001450467.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001450468.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001450469.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001450470.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001450471.1 identified by match to protein family HMM PF02698 YP_001450472.1 identified by match to protein family HMM PF00583 YP_001450473.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450474.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450478.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001450479.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001450480.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001450483.1 identified by similarity to GB:AAG28336.1 YP_001450484.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001450485.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001450486.1 identified by match to protein family HMM PF00132 YP_001450487.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001450488.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001450489.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001450490.1 identified by match to protein family HMM PF03477 YP_001450492.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001450493.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001450494.1 identified by match to protein family HMM PF08713 YP_001450496.1 identified by match to protein family HMM PF00583 YP_001450497.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001450499.1 identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114 YP_001450500.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. YP_001450502.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001450503.1 identified by match to protein family HMM TIGR01295 YP_001450505.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_001450506.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001450507.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001450508.1 catalyzes the phosphorylation of NAD to NADP YP_001450509.1 identified by match to protein family HMM PF04607 YP_001450510.1 identified by match to protein family HMM PF01928 YP_001450511.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001450512.1 identified by match to protein family HMM PF00266 YP_001450513.1 identified by match to protein family HMM PF08866 YP_001450515.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001450516.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001450517.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_001450518.1 negatively supercoils closed circular double-stranded DNA YP_001450519.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_001450520.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001450522.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001450523.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001450524.1 identified by match to protein family HMM PF02517 YP_001450525.1 identified by match to protein family HMM PF04439 YP_001450529.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001450530.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001450531.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01167 YP_001450532.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001450533.1 identified by match to protein family HMM PF00293 YP_001450534.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001450537.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001450538.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001450539.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001450540.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001450541.1 identified by match to protein family HMM PF00126 YP_001450542.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001450544.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001450545.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001450546.1 identified by match to protein family HMM PF00654 YP_001450547.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001450548.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_001450549.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_001450550.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001450551.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001450552.1 identified by match to protein family HMM PF04172 YP_001450553.1 identified by match to protein family HMM PF03788 YP_001450554.1 identified by match to protein family HMM PF01883 YP_001450555.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001450556.1 synthesizes RNA primers at the replication forks YP_001450557.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_001450558.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001450562.1 identified by match to protein family HMM PF03413; match to protein family HMM PF05569 YP_001450563.1 identified by match to protein family HMM PF03965 YP_001450564.1 identified by match to protein family HMM PF06993 YP_001450565.1 Involved in disulfide oxidoreductase activity and electron transport YP_001450566.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001450567.1 identified by match to protein family HMM PF00005 YP_001450569.1 identified by match to protein family HMM PF00440 YP_001450570.1 identified by match to protein family HMM PF07690 YP_001450572.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450573.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450574.1 identified by match to protein family HMM PF07690 YP_001450575.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001450578.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001450580.1 identified by match to protein family HMM PF01047 YP_001450581.1 identified by match to protein family HMM PF03358 YP_001450583.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_001450584.1 identified by match to protein family HMM PF00528 YP_001450585.1 identified by match to protein family HMM PF00528 YP_001450586.1 identified by match to protein family HMM PF01547 YP_001450587.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001450588.1 identified by match to protein family HMM PF03883 YP_001450589.1 identified by match to protein family HMM PF08876 YP_001450590.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001450592.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_001450593.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001450594.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_001450595.1 identified by match to protein family HMM PF01297 YP_001450596.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001450597.1 Essential for efficient processing of 16S rRNA YP_001450600.1 identified by match to protein family HMM PF02254 YP_001450601.1 identified by match to protein family HMM PF02386 YP_001450604.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001450606.1 identified by match to protein family HMM PF02517 YP_001450607.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_001450608.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_001450609.1 identified by match to protein family HMM PF01643 YP_001450610.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001450611.1 identified by match to protein family HMM PF00005 YP_001450612.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001450613.1 identified by match to protein family HMM PF00440 YP_001450614.1 identified by match to protein family HMM PF00583 YP_001450615.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326 YP_001450616.1 identified by match to protein family HMM PF00293 YP_001450617.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_001450618.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001450619.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001450620.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001450621.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001450622.1 Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001450623.1 identified by match to protein family HMM PF00005 YP_001450624.1 ABC transporter ATP-binding protein SP1715 YP_001450629.1 identified by match to protein family HMM PF08020 YP_001450632.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_001450639.1 identified by match to protein family HMM PF00005 YP_001450640.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_001450641.1 identified by match to protein family HMM PF00005 YP_001450642.1 identified by match to protein family HMM PF03747 YP_001450645.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001450646.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001450647.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_001450648.1 identified by match to protein family HMM PF01202 YP_001450649.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001450650.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866 YP_001450651.1 identified by match to protein family HMM PF06133 YP_001450652.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_001450653.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001450654.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001450655.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001450656.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_001450658.1 identified by match to protein family HMM PF00884 YP_001450660.1 identified by match to protein family HMM TIGR01573 YP_001450661.1 identified by match to protein family HMM TIGR00287 YP_001450662.1 identified by match to protein family HMM TIGR01865 YP_001450663.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001450664.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001450665.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001450666.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805 YP_001450667.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_001450668.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_001450669.1 similar to YegS from E. coli YP_001450670.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001450671.1 identified by match to protein family HMM PF06177 YP_001450672.1 identified by match to protein family HMM PF04138 YP_001450673.1 identified by match to protein family HMM PF00583 YP_001450674.1 identified by match to protein family HMM PF03483 YP_001450675.1 identified by match to protein family HMM PF01047 YP_001450676.1 identified by match to protein family HMM PF03631 YP_001450677.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_001450678.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085 YP_001450679.1 identified by match to protein family HMM PF00583 YP_001450680.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001450681.1 identified by match to protein family HMM PF02811 YP_001450682.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001450683.1 identified by match to protein family HMM PF01502 YP_001450684.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001450685.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001450686.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001450687.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001450688.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001450689.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001450690.1 identified by match to protein family HMM PF00587 YP_001450691.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001450693.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_001450694.1 identified by match to protein family HMM TIGR02774 YP_001450695.1 identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM TIGR01167 YP_001450696.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001450697.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001450698.1 identified by match to protein family HMM PF02687 YP_001450699.1 identified by match to protein family HMM PF00005 YP_001450704.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001450706.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001450707.1 identified by match to protein family HMM PF07997 YP_001450709.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001450710.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_001450711.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_001450712.1 negatively supercoils closed circular double-stranded DNA YP_001450713.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001450714.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_001450715.1 identified by match to protein family HMM PF01098 YP_001450716.1 identified by match to protein family HMM PF03601 YP_001450717.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407 YP_001450718.1 identified by match to protein family HMM PF00753 YP_001450719.1 identified by match to protein family HMM PF02687 YP_001450720.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_001450721.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_001450722.1 identified by match to protein family HMM PF00149 YP_001450723.1 identified by match to protein family HMM TIGR02206 YP_001450724.1 identified by match to protein family HMM TIGR02206 YP_001450725.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_001450726.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001450727.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001450728.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001450730.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001450731.1 Catalyzes the phosphorylation of UMP to UDP YP_001450732.1 identified by match to protein family HMM PF01501 YP_001450733.1 identified by match to protein family HMM PF00324 YP_001450734.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001450735.1 binds directly to 23S ribosomal RNA YP_001450737.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001450738.1 identified by match to protein family HMM PF00903 YP_001450739.1 identified by match to protein family HMM PF01580 YP_001450740.1 identified by match to protein family HMM PF04024 YP_001450741.1 identified by match to protein family HMM PF00293 YP_001450742.1 identified by match to protein family HMM PF00160 YP_001450744.1 identified by match to protein family HMM PF00005 YP_001450745.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001450747.1 identified by match to protein family HMM PF00293 YP_001450748.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001450749.1 identified by match to protein family HMM PF06171 YP_001450751.1 identified by match to protein family HMM PF00583 YP_001450752.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001450760.1 identified by match to protein family HMM PF00583 YP_001450761.1 identified by match to protein family HMM PF00324 YP_001450762.1 putative protein SP0913; identified by match to protein family HMM PF02687 YP_001450763.1 identified by match to protein family HMM PF00005 YP_001450765.1 identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_001450766.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_001450767.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001450769.1 identified by match to protein family HMM PF07972 YP_001450771.1 identified by match to protein family HMM PF00440 YP_001450774.1 identified by match to protein family HMM PF04397 YP_001450775.1 identified by match to protein family HMM PF01061 YP_001450776.1 identified by match to protein family HMM PF00005 YP_001450777.1 putative protein SP0913 YP_001450778.1 identified by match to protein family HMM PF00005 YP_001450783.1 identified by match to protein family HMM PF02518 YP_001450784.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001450788.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794; match to protein family HMM PF08022 YP_001450789.1 identified by match to protein family HMM PF01263 YP_001450791.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_001450792.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853 YP_001450793.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823 YP_001450794.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001450795.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_001450796.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_001450797.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_001450798.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_001450799.1 identified by match to protein family HMM PF03611 YP_001450801.1 identified by match to protein family HMM PF00359 YP_001450802.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_001450803.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_001450804.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_001450805.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_001450806.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001450809.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001450810.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001450811.1 identified by match to protein family HMM PF00903 YP_001450812.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001450813.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_001450814.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_001450815.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001450816.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_001450817.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. YP_001450818.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001450819.1 identified by match to protein family HMM PF02588 YP_001450820.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001450821.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001450822.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001450823.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001450824.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001450825.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001450826.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001450827.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001450828.1 identified by match to protein family HMM PF01569 YP_001450829.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001450830.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001450831.1 identified by match to protein family HMM TIGR02092 YP_001450832.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001450833.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001450834.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001450835.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001450836.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_001450837.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001450838.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001450839.1 identified by match to protein family HMM PF02517 YP_001450843.1 identified by match to protein family HMM PF01381 YP_001450844.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_001450845.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001450846.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001450847.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001450848.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001450849.1 identified by match to protein family HMM PF04525 YP_001450850.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_001450851.1 identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001450852.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_001450853.1 identified by match to protein family HMM PF06054 YP_001450854.1 required for cellobiose uptake and metabolism YP_001450856.1 required for cellobiose uptake and metabolism YP_001450857.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001450858.1 required for cellobiose uptake and metabolism YP_001450859.1 identified by match to protein family HMM PF03083 YP_001450860.1 converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism YP_001450862.1 identified by match to protein family HMM PF01306; match to protein family HMM PF07690 YP_001450863.1 identified by match to protein family HMM PF00768 YP_001450864.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502 YP_001450865.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001450866.1 identified by similarity to GB:AAN65260.1; match to protein family HMM PF01316; match to protein family HMM PF02863 YP_001450867.1 identified by similarity to GB:AAN65259.1; match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_001450868.1 identified by similarity to GB:AAN65258.1; match to protein family HMM PF03606 YP_001450869.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001450870.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_001450871.1 catalyzes the degradation of arginine to citruline and ammonia YP_001450872.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001450873.1 identified by match to protein family HMM PF07853 YP_001450874.1 identified by match to protein family HMM PF01022; match to protein family HMM PF08279 YP_001450877.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001450878.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001450879.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_001450880.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_001450882.1 identified by match to protein family HMM PF01553 YP_001450883.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001450884.1 identified by match to protein family HMM PF05175 YP_001450885.1 identified by match to protein family HMM PF01541 YP_001450886.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001450888.1 identified by match to protein family HMM PF00180 YP_001450889.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_001450890.1 Catalyzes the conversion of citrate to isocitrate YP_001450891.1 identified by match to protein family HMM PF01544 YP_001450892.1 identified by match to protein family HMM PF02517 YP_001450894.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_001450896.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001450897.1 identified by match to protein family HMM PF09148 YP_001450898.1 identified by match to protein family HMM PF01966 YP_001450899.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001450900.1 identified by match to protein family HMM PF02388 YP_001450901.1 identified by match to protein family HMM PF02388 YP_001450902.1 identified by match to protein family HMM PF00571 YP_001450903.1 identified by match to protein family HMM PF00005 YP_001450904.1 identified by match to protein family HMM PF00005; ATP-binding protein YP_001450905.1 identified by match to protein family HMM PF02653 YP_001450906.1 identified by match to protein family HMM PF02653 YP_001450907.1 identified by match to protein family HMM PF01094 YP_001450909.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001450910.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001450911.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001450912.1 identified by match to protein family HMM PF00155 YP_001450913.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_001450914.1 identified by match to protein family HMM PF01943 YP_001450915.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine YP_001450916.1 identified by match to protein family HMM PF08820 YP_001450917.1 identified by match to protein family HMM PF06520 YP_001450918.1 identified by match to protein family HMM PF05913 YP_001450920.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001450921.1 identified by match to protein family HMM PF02302 YP_001450922.1 identified by match to protein family HMM PF02255 YP_001450923.1 identified by match to protein family HMM PF06271 YP_001450924.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001450925.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001450926.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_001450927.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_001450928.1 identified by match to protein family HMM PF03372 YP_001450929.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_001450930.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992 YP_001450931.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_001450932.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001450934.1 identified by match to protein family HMM PF01594 YP_001450935.1 identified by match to protein family HMM PF00005 YP_001450937.1 identified by match to protein family HMM PF06962; match to protein family HMM PF08241 YP_001450938.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_001450939.1 identified by match to protein family HMM PF01035 YP_001450940.1 identified by match to protein family HMM PF01569 YP_001450942.1 identified by match to protein family HMM PF00588 YP_001450943.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001450944.1 identified by match to protein family HMM PF02386 YP_001450945.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_001450946.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001450947.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_001450948.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001450949.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001450950.1 identified by match to protein family HMM PF00571 YP_001450951.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001450952.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001450953.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001450954.1 identified by match to protein family HMM PF03672 YP_001450955.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_001450956.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830 YP_001450957.1 identified by match to protein family HMM PF03609 YP_001450958.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_001450959.1 identified by match to protein family HMM PF06115 YP_001450960.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001450962.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001450964.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus YP_001450965.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001450966.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001450967.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001450968.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001450969.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001450970.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001450971.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001450972.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_001450974.1 carries the fatty acid chain in fatty acid biosynthesis YP_001450975.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001450976.1 identified by match to protein family HMM PF01047 YP_001450977.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001450978.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001450980.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_001450981.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001450982.1 identified by match to protein family HMM PF00528 YP_001450983.1 identified by match to protein family HMM PF00528 YP_001450984.1 identified by match to protein family HMM PF00496 YP_001450985.1 identified by match to protein family HMM PF00496 YP_001450987.1 identified by match to protein family HMM PF00496 YP_001450988.1 identified by match to protein family HMM PF00496 YP_001450989.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001450990.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_001450991.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_001450992.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_001450993.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_001450994.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_001450995.1 identified by match to protein family HMM PF00953 YP_001450996.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_001450997.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001450999.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001451000.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_001451002.1 identified by match to protein family HMM PF01145 YP_001451003.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_001451004.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001451005.1 identified by match to protein family HMM PF01061 YP_001451006.1 identified by match to protein family HMM PF00005 YP_001451007.1 identified by match to protein family HMM PF02734 YP_001451008.1 identified by match to protein family HMM PF03780 YP_001451009.1 required for 70S ribosome assembly YP_001451011.1 identified by match to protein family HMM PF04397 YP_001451013.1 identified by match to protein family HMM PF06182 YP_001451014.1 identified by match to protein family HMM PF06182 YP_001451015.1 identified by match to protein family HMM PF00005; ABC transporter YP_001451016.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001451018.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001451019.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_001451020.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001451021.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001451024.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001451025.1 identified by match to protein family HMM PF00480 YP_001451027.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001451028.1 identified by match to protein family HMM PF01381 YP_001451029.1 identified by match to protein family HMM PF00232 YP_001451030.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001451031.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001451032.1 identified by match to protein family HMM PF04854 YP_001451033.1 identified by match to protein family HMM PF01547 YP_001451034.1 identified by match to protein family HMM PF00528 YP_001451035.1 identified by match to protein family HMM PF00528 YP_001451036.1 identified by match to protein family HMM PF00728 YP_001451037.1 identified by match to protein family HMM PF00480 YP_001451038.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_001451039.1 identified by match to protein family HMM PF06824 YP_001451040.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_001451041.1 identified by match to protein family HMM PF00754 YP_001451042.1 identified by match to protein family HMM PF01988 YP_001451043.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001451053.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001451054.1 identified by match to protein family HMM PF04140 YP_001451055.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001451056.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies YP_001451057.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_001451058.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001451059.1 identified by match to protein family HMM PF02302 YP_001451060.1 identified by match to protein family HMM PF02255 YP_001451061.1 identified by match to protein family HMM PF04198 YP_001451062.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001451063.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001451064.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_001451066.1 identified by match to protein family HMM PF00005 YP_001451067.1 identified by match to protein family HMM PF01381 YP_001451068.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_001451069.1 ATP-binding; identified by match to protein family HMM PF00005 YP_001451070.1 identified by match to protein family HMM PF00950 YP_001451071.1 identified by match to protein family HMM PF01297 YP_001451072.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001451073.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001451074.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001451075.1 identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024 YP_001451076.1 identified by match to protein family HMM PF04961 YP_001451077.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001451078.1 identified by match to protein family HMM PF05962 YP_001451079.1 identified by match to protein family HMM PF00324 YP_001451080.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001451082.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_001451083.1 identified by match to protein family HMM PF03704; match to protein family HMM PF07719 YP_001451085.1 identified by similarity to GB:AAF25184.1; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_001451086.1 identified by similarity to GB:AAF25185.1; match to protein family HMM PF01047 YP_001451087.1 identified by match to protein family HMM PF01878 YP_001451088.1 identified by match to protein family HMM PF02517 YP_001451090.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001451091.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001451092.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001451093.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001451094.1 identified by match to protein family HMM PF00583 YP_001451095.1 identified by match to protein family HMM PF00293 YP_001451097.1 identified by match to protein family HMM PF00004 YP_001451098.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_001451099.1 identified by match to protein family HMM PF04226 YP_001451102.1 identified by match to protein family HMM PF03780 YP_001451103.1 identified by match to protein family HMM PF05532 YP_001451104.1 identified by match to protein family HMM PF00005 YP_001451107.1 identified by match to protein family HMM PF04226 YP_001451109.1 identified by match to protein family HMM PF02073 YP_001451110.1 identified by match to protein family HMM PF00004 YP_001451113.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001451116.1 identified by match to protein family HMM PF08000 YP_001451117.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001451118.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001451119.1 identified by match to protein family HMM PF01148 YP_001451120.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_001451121.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001451122.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001451123.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996 YP_001451124.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_001451125.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001451126.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 YP_001451127.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001451128.1 identified by match to protein family HMM PF03780 YP_001451129.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001451130.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001451131.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001451132.1 identified by match to protein family HMM PF01544 YP_001451133.1 identified by match to protein family HMM PF06570 YP_001451134.1 identified by match to protein family HMM PF00583 YP_001451143.1 identified by match to protein family HMM PF00005 YP_001451144.1 identified by match to protein family HMM PF00440 YP_001451145.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001451146.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001451147.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001451148.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001451150.1 identified by match to protein family HMM PF02677 YP_001451151.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001451152.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001451153.1 identified by match to protein family HMM PF00005 YP_001451154.1 identified by match to protein family HMM PF02653; match to protein family HMM PF04392 YP_001451156.1 identified by match to protein family HMM PF03613 YP_001451157.1 identified by match to protein family HMM PF03609 YP_001451158.1 identified by match to protein family HMM PF03830 YP_001451159.1 identified by match to protein family HMM PF03610 YP_001451160.1 identified by match to protein family HMM PF01547 YP_001451161.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001451162.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001451163.1 identified by match to protein family HMM PF00532 YP_001451164.1 identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107 YP_001451166.1 identified by match to protein family HMM PF00085 YP_001451167.1 identified by match to protein family HMM PF01588 YP_001451168.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001451169.1 identified by match to protein family HMM PF08903 YP_001451172.1 identified by match to protein family HMM PF01381 YP_001451173.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001451174.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001451177.1 identified by match to protein family HMM PF00005 YP_001451178.1 identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498 YP_001451179.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001451180.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_001451181.1 identified by match to protein family HMM PF02517 YP_001451182.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001451188.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001451189.1 identified by match to protein family HMM PF00482 YP_001451190.1 identified by match to protein family HMM PF00437 YP_001451191.1 identified by match to protein family HMM PF06279 YP_001451192.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001451193.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001451194.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_001451195.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001451196.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001451199.1 identified by match to protein family HMM PF00403 YP_001451200.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001451201.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698 YP_001451202.1 identified by match to protein family HMM PF01297; match to protein family HMM PF09223 YP_001451203.1 identified by match to protein family HMM PF00950 YP_001451204.1 identified by similarity to GB:AAO43168.1; match to protein family HMM PF00005 YP_001451205.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_001451206.1 identified by match to protein family HMM PF07690 YP_001451208.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001451209.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001451210.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001451211.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001451212.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001451213.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001451214.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001451215.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001451216.1 late assembly protein YP_001451217.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001451218.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001451219.1 binds 5S rRNA along with protein L5 and L25 YP_001451220.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001451221.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001451222.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001451223.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001451224.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001451225.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001451226.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001451227.1 one of the stabilizing components for the large ribosomal subunit YP_001451228.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001451229.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001451230.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001451231.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001451232.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001451233.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001451234.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001451235.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001451236.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001451238.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001451239.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001451240.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_001451241.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001451243.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001451245.1 identified by match to protein family HMM PF00293 YP_001451246.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_001451247.1 identified by match to protein family HMM TIGR00125 YP_001451248.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001451249.1 identified by match to protein family HMM PF05848 YP_001451250.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001451251.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001451253.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167 YP_001451254.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_001451255.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001451256.1 Modulates Rho-dependent transcription termination YP_001451257.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001451258.1 identified by match to protein family HMM PF04228 YP_001451259.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001451260.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001451261.1 identified by match to protein family HMM PF01757 YP_001451262.1 identified by match to protein family HMM PF01183; match to protein family HMM PF08481 YP_001451264.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001451265.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01128 YP_001451267.1 identified by match to protein family HMM PF04991 YP_001451268.1 identified by match to protein family HMM PF00535 YP_001451269.1 identified by match to protein family HMM PF00535 YP_001451270.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001451271.1 identified by match to protein family HMM PF02397 YP_001451272.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001451273.1 identified by match to protein family HMM TIGR01007 YP_001451274.1 identified by match to protein family HMM PF02706 YP_001451275.1 identified by match to protein family HMM PF02811 YP_001451276.1 identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001451277.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491 YP_001451278.1 identified by match to protein family HMM PF00583 YP_001451279.1 identified by match to protein family HMM PF00583 YP_001451281.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001451285.1 identified by match to protein family HMM PF00614 YP_001451287.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001451288.1 identified by match to protein family HMM PF06949 YP_001451289.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001451290.1 identified by match to protein family HMM PF06135 YP_001451292.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_001451293.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001451294.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_001451295.1 identified by match to protein family HMM PF01381 YP_001451296.1 identified by match to protein family HMM PF02517 YP_001451297.1 identified by match to protein family HMM PF03352 YP_001451298.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001451299.1 identified by match to protein family HMM PF01381 YP_001451300.1 identified by match to protein family HMM PF06271 YP_001451301.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001451302.1 identified by match to protein family HMM PF04397 YP_001451304.1 This protein performs the mismatch recognition step during the DNA repair process YP_001451305.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_001451306.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001451307.1 identified by match to protein family HMM PF02588 YP_001451308.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001451310.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001451311.1 identified by match to protein family HMM PF01883 YP_001451312.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001451313.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001451314.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001451315.1 identified by match to protein family HMM PF06182 YP_001451316.1 identified by match to protein family HMM PF06182 YP_001451317.1 identified by match to protein family HMM PF00005 YP_001451321.1 identified by match to protein family HMM PF01580 YP_001451323.1 identified by match to protein family HMM PF01719 YP_001451324.1 identified by match to protein family HMM PF00589 YP_001451326.1 identified by match to protein family HMM PF00005 YP_001451328.1 identified by match to protein family HMM PF01381 YP_001451331.1 identified by match to protein family HMM PF00440 YP_001451332.1 identified by match to protein family HMM PF02525 YP_001451333.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001451337.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001451338.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001451340.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001451342.1 identified by match to protein family HMM PF05257; match to protein family HMM PF08481 YP_001451344.1 identified by match to protein family HMM TIGR01000 YP_001451345.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_001451346.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001451347.1 identified by match to protein family HMM PF00005 YP_001451348.1 identified by match to protein family HMM PF09084 YP_001451349.1 identified by match to protein family HMM PF00528 YP_001451351.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001451352.1 identified by match to protein family HMM TIGR03064 YP_001451353.1 identified by similarity to GB:AAC38579.1 YP_001451354.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001451355.1 identified by match to protein family HMM PF05257 YP_001451356.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001451358.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_001451359.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001451360.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001451363.1 identified by match to protein family HMM PF04977 YP_001451364.1 identified by match to protein family HMM PF01479 YP_001451365.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001451366.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001451367.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001451368.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001451369.1 identified by match to protein family HMM PF02518 YP_001451370.1 identified by match to protein family HMM PF03047; match to protein family HMM TIGR01847 YP_001451371.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001451372.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001451373.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180