-- dump date 20140620_082206 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 467705000001 SEQ_END SEQ_END NC_009785.1 2196662 2196662 DR NC_009785.1; contig end 2196662..2196662 Streptococcus gordonii str. Challis substr. CH1 YP_001449323.1 CDS dnaA NC_009785.1 166 1518 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 166..1518 Streptococcus gordonii str. Challis substr. CH1 5599800 YP_001449324.1 CDS dnaN NC_009785.1 1674 2810 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1674..2810 Streptococcus gordonii str. Challis substr. CH1 5598169 YP_001449325.1 CDS SGO_0003 NC_009785.1 2810 3013 D identified by match to protein family HMM PF06107; hypothetical protein 2810..3013 Streptococcus gordonii str. Challis substr. CH1 5599770 YP_001449326.1 CDS SGO_0004 NC_009785.1 3023 3541 R identified by match to protein family HMM PF06998; putative lipoprotein complement(3023..3541) Streptococcus gordonii str. Challis substr. CH1 5597802 YP_001449327.1 CDS SGO_0005 NC_009785.1 3582 6176 R hypothetical protein complement(3582..6176) Streptococcus gordonii str. Challis substr. CH1 5598735 YP_001449328.1 CDS SGO_0006 NC_009785.1 6216 7838 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(6216..7838) Streptococcus gordonii str. Challis substr. CH1 5598596 YP_001449329.1 CDS trpS NC_009785.1 8068 9090 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 8068..9090 Streptococcus gordonii str. Challis substr. CH1 5598950 YP_001449330.1 CDS SGO_0008 NC_009785.1 9195 10676 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 9195..10676 Streptococcus gordonii str. Challis substr. CH1 5598251 YP_001449331.1 CDS recF NC_009785.1 10780 11865 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(10780..11865) Streptococcus gordonii str. Challis substr. CH1 5598943 YP_001449332.1 CDS SGO_0010 NC_009785.1 11867 12259 R identified by match to protein family HMM TIGR02988; hypothetical protein complement(11867..12259) Streptococcus gordonii str. Challis substr. CH1 5598828 YP_001449333.1 CDS SGO_0011 NC_009785.1 12414 13661 D identified by match to protein family HMM PF05193; M16 family proteinase 12414..13661 Streptococcus gordonii str. Challis substr. CH1 5599686 YP_001449334.1 CDS mpp NC_009785.1 13661 14956 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 13661..14956 Streptococcus gordonii str. Challis substr. CH1 5598171 YP_001449335.1 CDS SGO_0013 NC_009785.1 15203 16033 D hypothetical protein 15203..16033 Streptococcus gordonii str. Challis substr. CH1 5598389 YP_001449336.1 CDS pgsA NC_009785.1 16042 16581 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 16042..16581 Streptococcus gordonii str. Challis substr. CH1 5599470 YP_001449337.1 CDS cbiO NC_009785.1 16585 17409 D with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 16585..17409 Streptococcus gordonii str. Challis substr. CH1 5597965 YP_001449338.1 CDS cbiO NC_009785.1 17394 18233 D with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit 17394..18233 Streptococcus gordonii str. Challis substr. CH1 5598333 YP_001449339.1 CDS SGO_0017 NC_009785.1 18226 19020 D identified by match to protein family HMM PF02361; ABC-type putative cobalt transport system, permease 18226..19020 Streptococcus gordonii str. Challis substr. CH1 5599501 YP_001449340.1 CDS SGO_0018 NC_009785.1 19222 19836 D identified by match to protein family HMM PF01476; match to protein family HMM PF06737; hypothetical protein 19222..19836 Streptococcus gordonii str. Challis substr. CH1 5598921 YP_001449341.1 CDS sdhA NC_009785.1 19913 20785 R identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(19913..20785) Streptococcus gordonii str. Challis substr. CH1 5597769 YP_001449342.1 CDS sdhB NC_009785.1 20794 21465 R identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta complement(20794..21465) Streptococcus gordonii str. Challis substr. CH1 5598952 YP_001449343.1 CDS SGO_0021 NC_009785.1 21791 22354 D identified by match to protein family HMM PF01476; hypothetical protein 21791..22354 Streptococcus gordonii str. Challis substr. CH1 5599306 YP_001449344.1 CDS mnmA NC_009785.1 22565 23686 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 22565..23686 Streptococcus gordonii str. Challis substr. CH1 5598654 YP_001449345.1 CDS SGO_0023 NC_009785.1 23706 24320 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 23706..24320 Streptococcus gordonii str. Challis substr. CH1 5598368 YP_001449346.1 CDS SGO_0024 NC_009785.1 24391 24486 D hypothetical protein 24391..24486 Streptococcus gordonii str. Challis substr. CH1 5599487 YP_001449347.1 CDS gidA NC_009785.1 24467 26386 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 24467..26386 Streptococcus gordonii str. Challis substr. CH1 5598741 YP_001449348.1 CDS SGO_0026 NC_009785.1 26728 28707 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 26728..28707 Streptococcus gordonii str. Challis substr. CH1 5598974 YP_001449349.1 CDS rplI NC_009785.1 28704 29156 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 28704..29156 Streptococcus gordonii str. Challis substr. CH1 5599244 YP_001449350.1 CDS dnaC NC_009785.1 29183 30538 D unwinds double stranded DNA; replicative DNA helicase 29183..30538 Streptococcus gordonii str. Challis substr. CH1 5599010 YP_001449351.1 CDS SGO_0029 NC_009785.1 30540 30830 D identified by match to protein family HMM PF06257; hypothetical protein 30540..30830 Streptococcus gordonii str. Challis substr. CH1 5598242 YP_001449352.1 CDS aspB NC_009785.1 30955 32142 D catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; aromatic amino acid aminotransferase 30955..32142 Streptococcus gordonii str. Challis substr. CH1 5597856 YP_001449353.1 CDS recO NC_009785.1 32120 32902 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 32120..32902 Streptococcus gordonii str. Challis substr. CH1 5598954 YP_001449354.1 CDS plsX NC_009785.1 32899 33900 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 32899..33900 Streptococcus gordonii str. Challis substr. CH1 5598993 YP_001449355.1 CDS acpP NC_009785.1 33897 34136 D identified by match to protein family HMM PF00550; acyl carrier protein 33897..34136 Streptococcus gordonii str. Challis substr. CH1 5598340 YP_001449356.1 CDS purC NC_009785.1 34289 34996 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 34289..34996 Streptococcus gordonii str. Challis substr. CH1 5598377 YP_001449357.1 CDS SGO_0035 NC_009785.1 35015 38758 D identified by match to protein family HMM PF01965; match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 35015..38758 Streptococcus gordonii str. Challis substr. CH1 5598097 YP_001449358.1 CDS purF NC_009785.1 38842 40284 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 38842..40284 Streptococcus gordonii str. Challis substr. CH1 5599273 YP_001449359.1 CDS purM NC_009785.1 40327 41349 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 40327..41349 Streptococcus gordonii str. Challis substr. CH1 5599227 YP_001449360.1 CDS purN NC_009785.1 41346 41897 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 41346..41897 Streptococcus gordonii str. Challis substr. CH1 5598667 YP_001449361.1 CDS SGO_0039 NC_009785.1 41910 42608 D hypothetical protein 41910..42608 Streptococcus gordonii str. Challis substr. CH1 5599875 YP_001449362.1 CDS purH NC_009785.1 42605 44152 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 42605..44152 Streptococcus gordonii str. Challis substr. CH1 5599066 YP_001449363.1 CDS SGO_0041 NC_009785.1 44149 44250 D hypothetical protein 44149..44250 Streptococcus gordonii str. Challis substr. CH1 5598084 YP_001449364.1 CDS SGO_0042 NC_009785.1 44481 45197 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(44481..45197) Streptococcus gordonii str. Challis substr. CH1 5598114 YP_001449365.1 CDS SGO_0043 NC_009785.1 45352 47130 D identified by match to protein family HMM PF01301; match to protein family HMM PF02449; beta-galactosidase 45352..47130 Streptococcus gordonii str. Challis substr. CH1 5598978 YP_001449366.1 CDS SGO_0044 NC_009785.1 47127 47603 D identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 47127..47603 Streptococcus gordonii str. Challis substr. CH1 5597880 YP_001449367.1 CDS SGO_0045 NC_009785.1 47630 48544 D identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 47630..48544 Streptococcus gordonii str. Challis substr. CH1 5599232 YP_001449368.1 CDS SGO_0046 NC_009785.1 48531 49352 D identified by match to protein family HMM PF03613; PTS system transporter subunit IID 48531..49352 Streptococcus gordonii str. Challis substr. CH1 5598421 YP_001449369.1 CDS SGO_0047 NC_009785.1 49364 49771 D identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 49364..49771 Streptococcus gordonii str. Challis substr. CH1 5598304 YP_001449370.1 CDS SGO_0048 NC_009785.1 49923 51086 D identified by match to protein family HMM PF01380; tagatose-6-phosphate ketose/aldose isomerase 49923..51086 Streptococcus gordonii str. Challis substr. CH1 5597760 YP_001449371.1 CDS galM NC_009785.1 51312 52346 D identified by match to protein family HMM PF01263; aldose 1-epimerase 51312..52346 Streptococcus gordonii str. Challis substr. CH1 5598923 YP_001449372.1 CDS SGO_0050 NC_009785.1 52440 53453 R hypothetical protein complement(52440..53453) Streptococcus gordonii str. Challis substr. CH1 5598042 YP_001449373.1 CDS SGO_0051 NC_009785.1 53446 54024 R hypothetical protein complement(53446..54024) Streptococcus gordonii str. Challis substr. CH1 5598376 YP_001449374.1 CDS SGO_0052 NC_009785.1 54011 54340 R identified by match to protein family HMM PF03551; PadR family transcriptional regulator complement(54011..54340) Streptococcus gordonii str. Challis substr. CH1 5599832 YP_001449375.1 CDS SGO_0053 NC_009785.1 54550 54681 D hypothetical protein 54550..54681 Streptococcus gordonii str. Challis substr. CH1 5599527 YP_001449376.1 CDS dltA NC_009785.1 54712 56250 D transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 54712..56250 Streptococcus gordonii str. Challis substr. CH1 5598513 YP_001449377.1 CDS dltB NC_009785.1 56247 57494 D identified by match to protein family HMM PF03062; integral membrane protein 56247..57494 Streptococcus gordonii str. Challis substr. CH1 5598826 YP_001449378.1 CDS dltC NC_009785.1 57515 57754 D D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 57515..57754 Streptococcus gordonii str. Challis substr. CH1 5599230 YP_001449379.1 CDS SGO_0057 NC_009785.1 57747 59015 D identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; dltD protein 57747..59015 Streptococcus gordonii str. Challis substr. CH1 5598586 YP_001449380.1 CDS SGO_0058 NC_009785.1 59125 59610 D identified by match to protein family HMM PF00583; acetyltransferase 59125..59610 Streptococcus gordonii str. Challis substr. CH1 5598458 YP_001449381.1 CDS pXO1 NC_009785.1 59937 60224 D identified by match to protein family HMM PF06013; hypothetical protein 59937..60224 Streptococcus gordonii str. Challis substr. CH1 5598105 YP_001449382.1 CDS SGO_0060 NC_009785.1 60303 63317 D hypothetical protein 60303..63317 Streptococcus gordonii str. Challis substr. CH1 5599161 YP_001449383.1 CDS SGO_0061 NC_009785.1 63324 63779 D hypothetical protein 63324..63779 Streptococcus gordonii str. Challis substr. CH1 5598314 YP_001449384.1 CDS SGO_0062 NC_009785.1 63853 64101 D hypothetical protein 63853..64101 Streptococcus gordonii str. Challis substr. CH1 5598270 YP_001449385.1 CDS SGO_0063 NC_009785.1 64094 65347 D hypothetical protein 64094..65347 Streptococcus gordonii str. Challis substr. CH1 5598865 YP_001449386.1 CDS SGO_0064 NC_009785.1 65367 69785 D identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 65367..69785 Streptococcus gordonii str. Challis substr. CH1 5599876 YP_001449387.1 CDS SGO_0065 NC_009785.1 69785 70882 D hypothetical protein 69785..70882 Streptococcus gordonii str. Challis substr. CH1 5599810 YP_001449388.1 CDS SGO_0066 NC_009785.1 70894 71199 D D-3-phosphoglycerate dehydrogenase 70894..71199 Streptococcus gordonii str. Challis substr. CH1 5599645 YP_001449389.1 CDS SGO_0067 NC_009785.1 71229 72653 D prophage function domain-containing protein 71229..72653 Streptococcus gordonii str. Challis substr. CH1 5599139 YP_001449390.1 CDS SGO_0068 NC_009785.1 72650 73183 D putative lipoprotein 72650..73183 Streptococcus gordonii str. Challis substr. CH1 5598766 YP_001449391.1 CDS SGO_0069 NC_009785.1 73192 73746 D hypothetical protein 73192..73746 Streptococcus gordonii str. Challis substr. CH1 5599364 YP_001449392.1 CDS SGO_0070 NC_009785.1 73756 74160 D merozoite surface protein 1 73756..74160 Streptococcus gordonii str. Challis substr. CH1 5599260 YP_001449393.1 CDS SGO_0071 NC_009785.1 74387 74644 D putative phage protein-like protein 74387..74644 Streptococcus gordonii str. Challis substr. CH1 5599063 YP_001449394.1 CDS SGO_0072 NC_009785.1 74650 75537 D hypothetical protein 74650..75537 Streptococcus gordonii str. Challis substr. CH1 5597983 YP_001449395.1 CDS SGO_0073 NC_009785.1 75530 75847 D hypothetical protein 75530..75847 Streptococcus gordonii str. Challis substr. CH1 5599082 YP_001449396.1 CDS SGO_0074 NC_009785.1 76324 77568 D hypothetical protein 76324..77568 Streptococcus gordonii str. Challis substr. CH1 5598555 YP_001449397.1 CDS SGO_0075 NC_009785.1 77592 78344 D hypothetical protein 77592..78344 Streptococcus gordonii str. Challis substr. CH1 5599676 YP_001449398.1 CDS SGO_0076 NC_009785.1 78636 79043 D hypothetical protein 78636..79043 Streptococcus gordonii str. Challis substr. CH1 5599841 YP_001449399.1 CDS SGO_0077 NC_009785.1 79329 79541 D hypothetical protein 79329..79541 Streptococcus gordonii str. Challis substr. CH1 5599431 YP_001449400.1 CDS SGO_0078 NC_009785.1 81145 81807 D hypothetical protein 81145..81807 Streptococcus gordonii str. Challis substr. CH1 5599581 YP_001449401.1 CDS SGO_0079 NC_009785.1 81809 82279 D hypothetical protein 81809..82279 Streptococcus gordonii str. Challis substr. CH1 5597868 YP_001449402.1 CDS SGO_0080 NC_009785.1 82287 83987 D hypothetical protein 82287..83987 Streptococcus gordonii str. Challis substr. CH1 5598204 YP_001449403.1 CDS SGO_0081 NC_009785.1 84002 84658 D hypothetical protein 84002..84658 Streptococcus gordonii str. Challis substr. CH1 5599415 YP_001449404.1 CDS SGO_0082 NC_009785.1 84655 84969 D hypothetical protein 84655..84969 Streptococcus gordonii str. Challis substr. CH1 5598091 YP_001449405.1 CDS SGO_0083 NC_009785.1 85210 86037 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(85210..86037) Streptococcus gordonii str. Challis substr. CH1 5599458 YP_001449406.1 CDS SGO_0084 NC_009785.1 85972 86073 D hypothetical protein 85972..86073 Streptococcus gordonii str. Challis substr. CH1 5599265 YP_001449407.1 CDS SGO_0085 NC_009785.1 86070 86816 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator complement(86070..86816) Streptococcus gordonii str. Challis substr. CH1 5597990 YP_001449408.1 CDS SGO_0086 NC_009785.1 86984 87391 R putative lipoprotein complement(86984..87391) Streptococcus gordonii str. Challis substr. CH1 5599250 YP_001449409.1 CDS SGO_0087 NC_009785.1 87704 88870 R identified by match to protein family HMM PF07690; major facilitator transporter complement(87704..88870) Streptococcus gordonii str. Challis substr. CH1 5599325 YP_001449410.1 CDS SGO_0088 NC_009785.1 88917 89438 R identified by match to protein family HMM PF00440; AraC family transcriptional regulator complement(88917..89438) Streptococcus gordonii str. Challis substr. CH1 5598099 YP_001449411.1 CDS SGO_0089 NC_009785.1 89598 90452 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein 89598..90452 Streptococcus gordonii str. Challis substr. CH1 5599231 YP_001449412.1 CDS SGO_0090 NC_009785.1 90480 91010 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(90480..91010) Streptococcus gordonii str. Challis substr. CH1 5598352 YP_001449413.1 CDS SGO_0091 NC_009785.1 91144 93567 D identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; integral membrane protein 91144..93567 Streptococcus gordonii str. Challis substr. CH1 5598191 YP_001449414.1 CDS SGO_0092 NC_009785.1 93748 94485 D hypothetical protein 93748..94485 Streptococcus gordonii str. Challis substr. CH1 5599688 YP_001449415.1 CDS SGO_0093 NC_009785.1 94466 95146 D hypothetical protein 94466..95146 Streptococcus gordonii str. Challis substr. CH1 5598684 YP_001449416.1 CDS SGO_0094 NC_009785.1 95169 96431 D putative lipoprotein 95169..96431 Streptococcus gordonii str. Challis substr. CH1 5598761 YP_001449417.1 CDS mccF NC_009785.1 96499 97452 R identified by match to protein family HMM PF02016; microcin immunity protein MccF complement(96499..97452) Streptococcus gordonii str. Challis substr. CH1 5598698 YP_001449418.1 CDS SGO_0096 NC_009785.1 97516 98148 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; hypothetical protein complement(97516..98148) Streptococcus gordonii str. Challis substr. CH1 5598330 YP_001449419.1 CDS SGO_0097 NC_009785.1 98442 98951 D hypothetical protein 98442..98951 Streptococcus gordonii str. Challis substr. CH1 5599088 YP_001449420.1 CDS SGO_0098 NC_009785.1 99028 99486 D identified by match to protein family HMM PF07972; ribonucleotide reductase-like protein 99028..99486 Streptococcus gordonii str. Challis substr. CH1 5599757 YP_001449421.1 CDS pulA-2 NC_009785.1 99545 101638 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase complement(99545..101638) Streptococcus gordonii str. Challis substr. CH1 5598862 YP_001449422.1 CDS SGO_0100 NC_009785.1 101873 102859 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; maltose operon transcription repressor complement(101873..102859) Streptococcus gordonii str. Challis substr. CH1 5597765 YP_001449423.1 CDS malA NC_009785.1 102869 103672 R maltodextrose utilization protein malA complement(102869..103672) Streptococcus gordonii str. Challis substr. CH1 5598584 YP_001449424.1 CDS SGO_0102 NC_009785.1 103727 104569 R identified by match to protein family HMM PF00528; maltodextrin transport system permease malD complement(103727..104569) Streptococcus gordonii str. Challis substr. CH1 5599166 YP_001449425.1 CDS SGO_0103 NC_009785.1 104571 105866 R identified by match to protein family HMM PF00528; match to protein family HMM PF05154; maltodextrin transport system permease malC complement(104571..105866) Streptococcus gordonii str. Challis substr. CH1 5599239 YP_001449426.1 CDS SGO_0104 NC_009785.1 106043 107308 R identified by match to protein family HMM PF01547; maltose/maltodextrin-binding protein complement(106043..107308) Streptococcus gordonii str. Challis substr. CH1 5598409 YP_001449427.1 CDS malQ NC_009785.1 107633 109183 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 107633..109183 Streptococcus gordonii str. Challis substr. CH1 5597919 YP_001449428.1 CDS glgP-2 NC_009785.1 109176 111437 D identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase 109176..111437 Streptococcus gordonii str. Challis substr. CH1 5598856 YP_001449429.1 CDS SGO_0107 NC_009785.1 111776 114952 D identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 111776..114952 Streptococcus gordonii str. Challis substr. CH1 5597882 YP_001449430.1 CDS ruvB NC_009785.1 115064 116062 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 115064..116062 Streptococcus gordonii str. Challis substr. CH1 5597912 YP_001449431.1 CDS SGO_0109 NC_009785.1 116067 116645 D identified by match to protein family HMM PF06042; hypothetical protein 116067..116645 Streptococcus gordonii str. Challis substr. CH1 5598554 YP_001449432.1 CDS SGO_0110 NC_009785.1 116893 117315 D identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase 116893..117315 Streptococcus gordonii str. Challis substr. CH1 5599073 YP_001449433.1 CDS SGO_0111 NC_009785.1 117318 117731 D identified by match to protein family HMM PF02493; MORN motif-containing protein 117318..117731 Streptococcus gordonii str. Challis substr. CH1 5598014 YP_001449434.1 CDS SGO_0112 NC_009785.1 117721 119535 D identified by match to protein family HMM PF01757; putative acyltransferase 117721..119535 Streptococcus gordonii str. Challis substr. CH1 5599021 YP_001449435.1 CDS acdH NC_009785.1 119851 122502 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 119851..122502 Streptococcus gordonii str. Challis substr. CH1 5597976 YP_001449436.1 CDS SGO_0114 NC_009785.1 122898 123440 D hypothetical protein 122898..123440 Streptococcus gordonii str. Challis substr. CH1 5599422 YP_001449437.1 CDS sthB NC_009785.1 123654 123815 R bacteriocin complement(123654..123815) Streptococcus gordonii str. Challis substr. CH1 5598140 YP_001449438.1 CDS sthA NC_009785.1 123957 124130 R identified by match to protein family HMM TIGR01847; bacteriocin complement(123957..124130) Streptococcus gordonii str. Challis substr. CH1 5598729 YP_001449439.1 CDS SGO_0117 NC_009785.1 124235 124402 D hypothetical protein 124235..124402 Streptococcus gordonii str. Challis substr. CH1 5597893 YP_001449440.1 CDS SGO_0118 NC_009785.1 124700 125401 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 124700..125401 Streptococcus gordonii str. Challis substr. CH1 5597796 YP_001449441.1 CDS SGO_0119 NC_009785.1 125440 125892 D identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 125440..125892 Streptococcus gordonii str. Challis substr. CH1 5599691 YP_001449442.1 CDS SGO_0120 NC_009785.1 125910 127262 D identified by match to protein family HMM PF01547; extracellular solute-binding protein 125910..127262 Streptococcus gordonii str. Challis substr. CH1 5598744 YP_001449443.1 CDS SGO_0121 NC_009785.1 127327 128211 D identified by match to protein family HMM PF00528; ABC transporter permease SP1689 127327..128211 Streptococcus gordonii str. Challis substr. CH1 5599346 YP_001449444.1 CDS SGO_0122 NC_009785.1 128211 129044 D identified by match to protein family HMM PF00528; ABC transporter permease SP1688 128211..129044 Streptococcus gordonii str. Challis substr. CH1 5598674 YP_001449445.1 CDS SGO_0123 NC_009785.1 129086 130189 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; Gfo/Idh/MocA family oxidoreductase 129086..130189 Streptococcus gordonii str. Challis substr. CH1 5598559 YP_001449446.1 CDS SGO_0124 NC_009785.1 130252 131169 D identified by match to protein family HMM PF00701; N-acetylneuraminate lyase 130252..131169 Streptococcus gordonii str. Challis substr. CH1 5599504 YP_001449447.1 CDS xylR NC_009785.1 131203 132087 D identified by match to protein family HMM PF00480; glucokinase 131203..132087 Streptococcus gordonii str. Challis substr. CH1 5598144 YP_001449448.1 CDS SGO_0126 NC_009785.1 132133 132462 D BlpT protein, fusion 132133..132462 Streptococcus gordonii str. Challis substr. CH1 5599123 YP_001449449.1 CDS SGO_0127 NC_009785.1 132523 133377 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator complement(132523..133377) Streptococcus gordonii str. Challis substr. CH1 5598517 YP_001449450.1 CDS SGO_0128 NC_009785.1 133619 133942 D hypothetical protein 133619..133942 Streptococcus gordonii str. Challis substr. CH1 5599528 YP_001449451.1 CDS atpI NC_009785.1 133932 135887 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 133932..135887 Streptococcus gordonii str. Challis substr. CH1 5598152 YP_001449452.1 CDS atpK NC_009785.1 136020 136499 D produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 136020..136499 Streptococcus gordonii str. Challis substr. CH1 5599318 YP_001449453.1 CDS SGO_0131 NC_009785.1 136510 137100 D v-type sodium ATP synthase, chain E 136510..137100 Streptococcus gordonii str. Challis substr. CH1 5598887 YP_001449454.1 CDS SGO_0132 NC_009785.1 137111 138124 D identified by match to protein family HMM PF01992; ATP synthase (C/AC39) subunit 137111..138124 Streptococcus gordonii str. Challis substr. CH1 5599048 YP_001449455.1 CDS SGO_0133 NC_009785.1 138111 138431 D produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 138111..138431 Streptococcus gordonii str. Challis substr. CH1 5598695 YP_001449456.1 CDS SGO_0134 NC_009785.1 138439 139134 D identified by match to protein family HMM PF00583; acetyltransferase 138439..139134 Streptococcus gordonii str. Challis substr. CH1 5599186 YP_001449457.1 CDS SGO_0135 NC_009785.1 139299 141089 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 139299..141089 Streptococcus gordonii str. Challis substr. CH1 5597743 YP_001449458.1 CDS SGO_0136 NC_009785.1 141076 142470 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 141076..142470 Streptococcus gordonii str. Challis substr. CH1 5599417 YP_001449459.1 CDS SGO_0137 NC_009785.1 142467 143090 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 142467..143090 Streptococcus gordonii str. Challis substr. CH1 5598882 YP_001449460.1 CDS SGO_0138 NC_009785.1 143553 144689 D identified by match to protein family HMM PF01476; LysM domain-containing protein 143553..144689 Streptococcus gordonii str. Challis substr. CH1 5599868 YP_001449461.1 CDS thrC NC_009785.1 144806 146290 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 144806..146290 Streptococcus gordonii str. Challis substr. CH1 5598550 YP_001449462.1 CDS SGO_0140 NC_009785.1 146397 147674 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE family transporter 146397..147674 Streptococcus gordonii str. Challis substr. CH1 5598116 YP_001449463.1 CDS SGO_0141 NC_009785.1 147671 148285 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 147671..148285 Streptococcus gordonii str. Challis substr. CH1 5598622 YP_001449464.1 CDS SGO_0142 NC_009785.1 148333 148818 R hypothetical protein complement(148333..148818) Streptococcus gordonii str. Challis substr. CH1 5598888 YP_001449465.1 CDS SGO_0144 NC_009785.1 149058 152636 D hypothetical protein 149058..152636 Streptococcus gordonii str. Challis substr. CH1 5599592 YP_001449466.1 CDS polI NC_009785.1 152698 155340 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 152698..155340 Streptococcus gordonii str. Challis substr. CH1 5598001 YP_001449467.1 CDS SGO_0146 NC_009785.1 155696 156133 D identified by match to protein family HMM PF02629; CoA-binding domain-containing protein 155696..156133 Streptococcus gordonii str. Challis substr. CH1 5599644 YP_001449468.1 CDS SGO_0147 NC_009785.1 156135 156632 D hypothetical protein 156135..156632 Streptococcus gordonii str. Challis substr. CH1 5597746 YP_001449469.1 CDS SGO_0148 NC_009785.1 156795 157409 D hypothetical protein 156795..157409 Streptococcus gordonii str. Challis substr. CH1 5599459 YP_001449470.1 CDS SGO_0149 NC_009785.1 157657 157977 D hypothetical protein 157657..157977 Streptococcus gordonii str. Challis substr. CH1 5598351 YP_001449471.1 CDS fucA1 NC_009785.1 158080 159546 D identified by match to protein family HMM PF01120; alpha-L-fucosidase 158080..159546 Streptococcus gordonii str. Challis substr. CH1 5599052 YP_001449472.1 CDS SGO_0151 NC_009785.1 159650 160477 R identified by match to protein family HMM PF06161; hypothetical protein complement(159650..160477) Streptococcus gordonii str. Challis substr. CH1 5598255 YP_001449473.1 CDS tgt NC_009785.1 160617 161759 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 160617..161759 Streptococcus gordonii str. Challis substr. CH1 5599639 YP_001449474.1 CDS SGO_0153 NC_009785.1 161850 162383 D identified by match to protein family HMM PF00383; putative cytidine/deoxycytidylate deaminase 161850..162383 Streptococcus gordonii str. Challis substr. CH1 5598764 YP_001449475.1 CDS pgi NC_009785.1 163004 164353 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 163004..164353 Streptococcus gordonii str. Challis substr. CH1 5599327 YP_001449476.1 CDS SGO_0155 NC_009785.1 164536 165444 D hypothetical protein 164536..165444 Streptococcus gordonii str. Challis substr. CH1 5598436 YP_001449477.1 CDS SGO_0156 NC_009785.1 165466 166272 D hypothetical protein 165466..166272 Streptococcus gordonii str. Challis substr. CH1 5598208 YP_001449478.1 CDS SGO_0157 NC_009785.1 166681 167631 D hypothetical protein 166681..167631 Streptococcus gordonii str. Challis substr. CH1 5598588 YP_001449479.1 CDS SGO_0158 NC_009785.1 167743 168441 D identified by match to protein family HMM PF00132; match to protein family HMM PF08503; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 167743..168441 Streptococcus gordonii str. Challis substr. CH1 5599877 YP_001449480.1 CDS SGO_0159 NC_009785.1 168531 169664 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; hippurate hydrolase 168531..169664 Streptococcus gordonii str. Challis substr. CH1 5598836 YP_001449481.1 CDS SGO_0160 NC_009785.1 169685 170218 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 169685..170218 Streptococcus gordonii str. Challis substr. CH1 5598238 YP_001449482.1 CDS SGO_0161 NC_009785.1 170199 170882 D identified by match to protein family HMM PF01694; hypothetical protein 170199..170882 Streptococcus gordonii str. Challis substr. CH1 5599540 YP_001449483.1 CDS abpB NC_009785.1 171195 173153 D identified by match to protein family HMM PF03577; amylase-binding protein B 171195..173153 Streptococcus gordonii str. Challis substr. CH1 5599760 YP_001449484.1 CDS galU NC_009785.1 173267 174175 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(173267..174175) Streptococcus gordonii str. Challis substr. CH1 5598298 YP_001449485.1 CDS gpsA NC_009785.1 174205 175221 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(174205..175221) Streptococcus gordonii str. Challis substr. CH1 5598396 YP_001449486.1 CDS SGO_0165 NC_009785.1 175414 177123 D ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP-binding permease 175414..177123 Streptococcus gordonii str. Challis substr. CH1 5598781 YP_001449487.1 CDS SGO_0166 NC_009785.1 177125 178894 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter; ATP-binding permease 177125..178894 Streptococcus gordonii str. Challis substr. CH1 5598415 YP_001449488.1 CDS SGO_0167 NC_009785.1 179073 179762 D identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase 179073..179762 Streptococcus gordonii str. Challis substr. CH1 5599008 YP_001449489.1 CDS SGO_0168 NC_009785.1 180021 180470 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 180021..180470 Streptococcus gordonii str. Challis substr. CH1 5597915 YP_001449490.1 CDS dut NC_009785.1 180555 180998 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 180555..180998 Streptococcus gordonii str. Challis substr. CH1 5598620 YP_001449491.1 CDS SGO_0170 NC_009785.1 181008 181475 D hypothetical protein 181008..181475 Streptococcus gordonii str. Challis substr. CH1 5598703 YP_001449492.1 CDS radA NC_009785.1 181433 182833 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 181433..182833 Streptococcus gordonii str. Challis substr. CH1 5598170 YP_001449493.1 CDS SGO_0172 NC_009785.1 182946 183656 D identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266; hypothetical protein 182946..183656 Streptococcus gordonii str. Challis substr. CH1 5597945 YP_001449494.1 CDS SGO_0173 NC_009785.1 183792 184286 D identified by match to protein family HMM PF00484; carbonic anhydrase 183792..184286 Streptococcus gordonii str. Challis substr. CH1 5599674 YP_001449495.1 CDS gltX NC_009785.1 184436 185893 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 184436..185893 Streptococcus gordonii str. Challis substr. CH1 5597962 YP_001449496.1 CDS argG NC_009785.1 186069 187268 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 186069..187268 Streptococcus gordonii str. Challis substr. CH1 5598341 YP_001449497.1 CDS argH NC_009785.1 187283 188668 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 187283..188668 Streptococcus gordonii str. Challis substr. CH1 5598210 YP_001449498.1 CDS SGO_0177 NC_009785.1 188724 188819 D hypothetical protein 188724..188819 Streptococcus gordonii str. Challis substr. CH1 5598115 YP_001449499.1 CDS rnpA NC_009785.1 188816 189175 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 188816..189175 Streptococcus gordonii str. Challis substr. CH1 5598930 YP_001449500.1 CDS SGO_0179 NC_009785.1 189159 189974 D identified by match to protein family HMM PF02096; membrane protein oxaA 1 precursor 189159..189974 Streptococcus gordonii str. Challis substr. CH1 5598109 YP_001449501.1 CDS jag NC_009785.1 189990 190952 D identified by match to protein family HMM PF01424; hypothetical protein 189990..190952 Streptococcus gordonii str. Challis substr. CH1 5598023 YP_001449502.1 CDS SGO_0181 NC_009785.1 191078 192076 D putative lipoprotein 191078..192076 Streptococcus gordonii str. Challis substr. CH1 5598248 YP_001449503.1 CDS sapR NC_009785.1 192091 192723 D sakacin A production response regulator 192091..192723 Streptococcus gordonii str. Challis substr. CH1 5599189 YP_001449504.1 CDS rpmH NC_009785.1 192863 192997 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 192863..192997 Streptococcus gordonii str. Challis substr. CH1 5598855 YP_001449505.1 CDS SGO_0184 NC_009785.1 193139 194548 R urease cluster protein complement(193139..194548) Streptococcus gordonii str. Challis substr. CH1 5597936 YP_001449506.1 CDS SGO_0185 NC_009785.1 194550 194768 R transcription regulator-like protein yozG complement(194550..194768) Streptococcus gordonii str. Challis substr. CH1 5598971 YP_001449507.1 CDS SGO_0186 NC_009785.1 194777 195253 R hypothetical protein complement(194777..195253) Streptococcus gordonii str. Challis substr. CH1 5597800 YP_001449508.1 CDS SGO_0187 NC_009785.1 195416 195508 D hypothetical protein 195416..195508 Streptococcus gordonii str. Challis substr. CH1 5597877 YP_001449509.1 CDS SGO_0188 NC_009785.1 195505 196275 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 195505..196275 Streptococcus gordonii str. Challis substr. CH1 5599029 YP_001449510.1 CDS SGO_0189 NC_009785.1 196247 196837 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 196247..196837 Streptococcus gordonii str. Challis substr. CH1 5598499 YP_001449511.1 CDS SGO_0190 NC_009785.1 196849 197703 D identified by match to protein family HMM PF00106; hypothetical protein 196849..197703 Streptococcus gordonii str. Challis substr. CH1 5598445 YP_001449512.1 CDS SGO_0191 NC_009785.1 197740 199155 D hypothetical protein 197740..199155 Streptococcus gordonii str. Challis substr. CH1 5599773 YP_001449513.1 CDS SGO_0192 NC_009785.1 199167 199502 D hypothetical protein 199167..199502 Streptococcus gordonii str. Challis substr. CH1 5597782 YP_001449514.1 CDS ksgA NC_009785.1 199499 200371 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 199499..200371 Streptococcus gordonii str. Challis substr. CH1 5599308 YP_001449515.1 CDS SGO_0194 NC_009785.1 200429 200836 D hypothetical protein 200429..200836 Streptococcus gordonii str. Challis substr. CH1 5599542 YP_001449516.1 CDS SGO_0196 NC_009785.1 201110 202027 R identified by match to protein family HMM PF02517; protease complement(201110..202027) Streptococcus gordonii str. Challis substr. CH1 5599846 YP_001449517.1 CDS SGO_0197 NC_009785.1 202373 203251 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 202373..203251 Streptococcus gordonii str. Challis substr. CH1 5598214 YP_001449518.1 CDS rpe NC_009785.1 203268 203927 D identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 203268..203927 Streptococcus gordonii str. Challis substr. CH1 5597970 YP_001449519.1 CDS SGO_0199 NC_009785.1 203866 204552 D identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 203866..204552 Streptococcus gordonii str. Challis substr. CH1 5599208 YP_001449520.1 CDS SGO_0200 NC_009785.1 204554 205810 D identified by match to protein family HMM PF02646; competence-induced protein Ccs50 204554..205810 Streptococcus gordonii str. Challis substr. CH1 5597867 YP_001449521.1 CDS SGO_0201 NC_009785.1 205800 206741 D identified by match to protein family HMM PF01336; match to protein family HMM PF01966; cmp-binding-factor 1 205800..206741 Streptococcus gordonii str. Challis substr. CH1 5598353 YP_001449522.1 CDS SGO_0202 NC_009785.1 206837 207652 D identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor 206837..207652 Streptococcus gordonii str. Challis substr. CH1 5599334 YP_001449523.1 CDS SGO_0203 NC_009785.1 207667 208206 D hypothetical protein 207667..208206 Streptococcus gordonii str. Challis substr. CH1 5598289 YP_001449524.1 CDS rpsL NC_009785.1 208451 208864 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 208451..208864 Streptococcus gordonii str. Challis substr. CH1 5599277 YP_001449525.1 CDS rpsG NC_009785.1 208884 209354 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 208884..209354 Streptococcus gordonii str. Challis substr. CH1 5598678 YP_001449526.1 CDS fusA NC_009785.1 209769 211850 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 209769..211850 Streptococcus gordonii str. Challis substr. CH1 5598128 YP_001449527.1 CDS gap NC_009785.1 212083 213093 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 212083..213093 Streptococcus gordonii str. Challis substr. CH1 5597809 YP_001449528.1 CDS SGO_0208 NC_009785.1 213339 218087 D identified by match to protein family HMM PF00746; match to protein family HMM PF03644; match to protein family HMM PF04650; match to protein family HMM PF07523; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; glycosyl hydrolase family LPXTG cell wall surface protein 213339..218087 Streptococcus gordonii str. Challis substr. CH1 5599392 YP_001449529.1 CDS pgk NC_009785.1 218406 219605 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 218406..219605 Streptococcus gordonii str. Challis substr. CH1 5599195 YP_001449530.1 CDS sspA NC_009785.1 219788 224515 D identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167; streptococcal surface protein A 219788..224515 Streptococcus gordonii str. Challis substr. CH1 5599749 YP_001449531.1 CDS sspB NC_009785.1 224934 229433 D identified by match to protein family HMM PF00746; match to protein family HMM PF06696; match to protein family HMM PF08363; match to protein family HMM TIGR01167; streptococcal surface protein B 224934..229433 Streptococcus gordonii str. Challis substr. CH1 5598615 YP_001449532.1 CDS SGO_0212 NC_009785.1 229679 230329 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; putative peptidoglycan hydrolase and general stress protein 229679..230329 Streptococcus gordonii str. Challis substr. CH1 5598932 YP_001449533.1 CDS SGO_0213 NC_009785.1 230481 231011 D hypothetical protein 230481..231011 Streptococcus gordonii str. Challis substr. CH1 5599707 YP_001449534.1 CDS SGO_0214 NC_009785.1 231300 231665 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 231300..231665 Streptococcus gordonii str. Challis substr. CH1 5598279 YP_001449535.1 CDS glnA NC_009785.1 231695 233041 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 231695..233041 Streptococcus gordonii str. Challis substr. CH1 5599011 YP_001449536.1 CDS SGO_0216 NC_009785.1 233095 233499 D identified by match to protein family HMM PF00583; histone acetyltransferase HPA2 233095..233499 Streptococcus gordonii str. Challis substr. CH1 5598696 YP_001449537.1 CDS SGO_0217 NC_009785.1 233734 235068 D identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; proton-dependent manganese transporter group C beta 2 233734..235068 Streptococcus gordonii str. Challis substr. CH1 5598050 YP_001449538.1 CDS SGO_0219 NC_009785.1 236756 238438 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily protein 1 complement(236756..238438) Streptococcus gordonii str. Challis substr. CH1 5597966 YP_001449539.1 CDS SGO_0220 NC_009785.1 238442 238672 R identified by match to protein family HMM PF07288; hypothetical protein complement(238442..238672) Streptococcus gordonii str. Challis substr. CH1 5598655 YP_001449540.1 CDS SGO_0221 NC_009785.1 238949 239641 D identified by match to protein family HMM PF00814; glycoprotein endopeptidase 238949..239641 Streptococcus gordonii str. Challis substr. CH1 5598164 YP_001449541.1 CDS SGO_0222 NC_009785.1 239590 240090 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine N-acetyltransferase 239590..240090 Streptococcus gordonii str. Challis substr. CH1 5598017 YP_001449542.1 CDS SGO_0223 NC_009785.1 240080 241090 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 240080..241090 Streptococcus gordonii str. Challis substr. CH1 5599129 YP_001449543.1 CDS SGO_0224 NC_009785.1 241100 241795 D identified by match to protein family HMM PF03591; transport protein-like protein 241100..241795 Streptococcus gordonii str. Challis substr. CH1 5597776 YP_001449544.1 CDS SGO_0225 NC_009785.1 241785 242117 D identified by match to protein family HMM PF05437; integral membrane protein 241785..242117 Streptococcus gordonii str. Challis substr. CH1 5598530 YP_001449545.1 CDS SGO_0226 NC_009785.1 242226 242972 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 242226..242972 Streptococcus gordonii str. Challis substr. CH1 5598541 YP_001449546.1 CDS SGO_0227 NC_009785.1 243271 243939 D putative lipoprotein 243271..243939 Streptococcus gordonii str. Challis substr. CH1 5599310 YP_001449547.1 CDS SGO_0228 NC_009785.1 244040 244780 D identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278; MerR family transcriptional regulator 244040..244780 Streptococcus gordonii str. Challis substr. CH1 5598512 YP_001449548.1 CDS SGO_0229 NC_009785.1 244836 246011 R identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein complement(244836..246011) Streptococcus gordonii str. Challis substr. CH1 5599289 YP_001449549.1 CDS SGO_0230 NC_009785.1 246230 246772 D identified by match to protein family HMM PF04394; match to protein family HMM PF08279; hypothetical protein 246230..246772 Streptococcus gordonii str. Challis substr. CH1 5598838 YP_001449550.1 CDS SGO_0231 NC_009785.1 246828 248588 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 246828..248588 Streptococcus gordonii str. Challis substr. CH1 5599680 YP_001449551.1 CDS SGO_0232 NC_009785.1 248630 248989 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(248630..248989) Streptococcus gordonii str. Challis substr. CH1 5598320 YP_001449552.1 CDS SGO_0233 NC_009785.1 249121 249528 D putative lipoprotein 249121..249528 Streptococcus gordonii str. Challis substr. CH1 5597768 YP_001449553.1 CDS pepX NC_009785.1 249561 251840 R catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase complement(249561..251840) Streptococcus gordonii str. Challis substr. CH1 5599130 YP_001449554.1 CDS SGO_0235 NC_009785.1 251944 252795 D identified by match to protein family HMM PF00230; glycerol uptake facilitator protein-like protein 251944..252795 Streptococcus gordonii str. Challis substr. CH1 5598690 YP_001449555.1 CDS SGO_0236 NC_009785.1 252936 254216 D hypothetical protein 252936..254216 Streptococcus gordonii str. Challis substr. CH1 5597803 YP_001449556.1 CDS SGO_0237 NC_009785.1 254344 255081 D proteinase 254344..255081 Streptococcus gordonii str. Challis substr. CH1 5599365 YP_001449557.1 CDS SGO_0238 NC_009785.1 255078 256013 D identified by match to protein family HMM PF00144; beta-lactamase-like protein 255078..256013 Streptococcus gordonii str. Challis substr. CH1 5598567 YP_001449558.1 CDS mvk NC_009785.1 256144 257022 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549; mevalonate kinase 256144..257022 Streptococcus gordonii str. Challis substr. CH1 5598319 YP_001449559.1 CDS mvaD NC_009785.1 257004 257951 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240; diphosphomevalonate decarboxylase 257004..257951 Streptococcus gordonii str. Challis substr. CH1 5599375 YP_001449560.1 CDS SGO_0241 NC_009785.1 257941 258960 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220; phosphomevalonate kinase 257941..258960 Streptococcus gordonii str. Challis substr. CH1 5598113 YP_001449561.1 CDS SGO_0242 NC_009785.1 258944 259948 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 258944..259948 Streptococcus gordonii str. Challis substr. CH1 5598717 YP_001449562.1 CDS SGO_0243 NC_009785.1 259985 261259 R identified by match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative complement(259985..261259) Streptococcus gordonii str. Challis substr. CH1 5598111 YP_001449563.1 CDS SGO_0244 NC_009785.1 261256 262434 R identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase complement(261256..262434) Streptococcus gordonii str. Challis substr. CH1 5598937 YP_001449564.1 CDS SGO_0245 NC_009785.1 262622 263077 R hypothetical protein complement(262622..263077) Streptococcus gordonii str. Challis substr. CH1 5599095 YP_001449565.1 CDS SGO_0246 NC_009785.1 263082 263840 R identified by match to protein family HMM PF06738; membrane spanning protein complement(263082..263840) Streptococcus gordonii str. Challis substr. CH1 5599373 YP_001449566.1 CDS pfl NC_009785.1 263978 266293 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(263978..266293) Streptococcus gordonii str. Challis substr. CH1 5598601 YP_001449567.1 CDS SGO_0248 NC_009785.1 266543 267607 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 266543..267607 Streptococcus gordonii str. Challis substr. CH1 5599418 YP_001449568.1 CDS SGO_0249 NC_009785.1 267819 268145 D hypothetical protein 267819..268145 Streptococcus gordonii str. Challis substr. CH1 5598305 YP_001449569.1 CDS SGO_0250 NC_009785.1 268464 268940 D hypothetical protein 268464..268940 Streptococcus gordonii str. Challis substr. CH1 5597766 YP_001449570.1 CDS SGO_0251 NC_009785.1 268892 269641 D identified by match to protein family HMM PF02517; CAAX amino protease 268892..269641 Streptococcus gordonii str. Challis substr. CH1 5598059 YP_001449571.1 CDS SGO_0252 NC_009785.1 269717 270355 D identified by match to protein family HMM PF00440; TetR-type transcriptional regulator 269717..270355 Streptococcus gordonii str. Challis substr. CH1 5598973 YP_001449572.1 CDS SGO_0253 NC_009785.1 270660 271604 R hypothetical protein complement(270660..271604) Streptococcus gordonii str. Challis substr. CH1 5599312 YP_001449573.1 CDS SGO_0254 NC_009785.1 271661 274027 R identified by match to protein family HMM TIGR01448; recombinase D complement(271661..274027) Streptococcus gordonii str. Challis substr. CH1 5598903 YP_001449574.1 CDS SGO_0255 NC_009785.1 274122 274724 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Signal peptidase I complement(274122..274724) Streptococcus gordonii str. Challis substr. CH1 5599336 YP_001449575.1 CDS rnhC NC_009785.1 274728 275618 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(274728..275618) Streptococcus gordonii str. Challis substr. CH1 5599146 YP_001449576.1 CDS SGO_0257 NC_009785.1 275610 275726 D hypothetical protein 275610..275726 Streptococcus gordonii str. Challis substr. CH1 5599577 YP_001449577.1 CDS SGO_0258 NC_009785.1 275768 276073 D hypothetical protein 275768..276073 Streptococcus gordonii str. Challis substr. CH1 5599440 YP_001449578.1 CDS cvpA NC_009785.1 276070 276621 D identified by match to protein family HMM PF02674; CvpA family protein 276070..276621 Streptococcus gordonii str. Challis substr. CH1 5598428 YP_001449579.1 CDS SGO_0260 NC_009785.1 276677 279010 D identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; DNA mismatch binding protein MutS2 276677..279010 Streptococcus gordonii str. Challis substr. CH1 5598412 YP_001449580.1 CDS SGO_0261 NC_009785.1 279021 279665 D identified by match to protein family HMM PF00583; acetyltransferase 279021..279665 Streptococcus gordonii str. Challis substr. CH1 5599284 YP_001449581.1 CDS SGO_0262 NC_009785.1 279766 281184 D identified by match to protein family HMM PF03577; dipeptidase 279766..281184 Streptococcus gordonii str. Challis substr. CH1 5597996 YP_001449582.1 CDS trx-1 NC_009785.1 281269 281583 D identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 281269..281583 Streptococcus gordonii str. Challis substr. CH1 5599787 YP_001449583.1 CDS SGO_0264 NC_009785.1 281745 282263 R hypothetical protein complement(281745..282263) Streptococcus gordonii str. Challis substr. CH1 5599214 YP_001449584.1 CDS nac NC_009785.1 282372 283118 D identified by match to protein family HMM PF00126; LysR family transcriptional regulator 282372..283118 Streptococcus gordonii str. Challis substr. CH1 5597925 YP_001449585.1 CDS SGO_0266 NC_009785.1 283218 283625 D hypothetical protein 283218..283625 Streptococcus gordonii str. Challis substr. CH1 5598132 YP_001449586.1 CDS SGO_0267 NC_009785.1 283883 285322 D identified by match to protein family HMM PF00324; amino acid permease family protein 283883..285322 Streptococcus gordonii str. Challis substr. CH1 5599651 YP_001449587.1 CDS SGO_0268 NC_009785.1 285466 286305 D identified by match to protein family HMM PF00924; mechanosensitive transport protein 285466..286305 Streptococcus gordonii str. Challis substr. CH1 5597733 YP_001449588.1 CDS SGO_0269 NC_009785.1 286342 286956 D hypothetical protein 286342..286956 Streptococcus gordonii str. Challis substr. CH1 5598840 YP_001449589.1 CDS gltP NC_009785.1 287036 288250 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(287036..288250) Streptococcus gordonii str. Challis substr. CH1 5599781 YP_001449590.1 CDS SGO_0271 NC_009785.1 288632 289534 D hypothetical protein 288632..289534 Streptococcus gordonii str. Challis substr. CH1 5598262 YP_001449591.1 CDS SGO_0272 NC_009785.1 289599 289967 D hypothetical protein 289599..289967 Streptococcus gordonii str. Challis substr. CH1 5599382 YP_001449592.1 CDS SGO_0273 NC_009785.1 290379 291383 D identified by match to protein family HMM PF08240; zinc-binding oxidoreductase 290379..291383 Streptococcus gordonii str. Challis substr. CH1 5599267 YP_001449593.1 CDS SGO_0274 NC_009785.1 291400 292044 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 291400..292044 Streptococcus gordonii str. Challis substr. CH1 5598722 YP_001449594.1 CDS SGO_0275 NC_009785.1 292331 292816 R identified by match to protein family HMM PF00583; MarR family transcriptional regulator complement(292331..292816) Streptococcus gordonii str. Challis substr. CH1 5599338 YP_001449595.1 CDS gdhA NC_009785.1 292848 294194 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(292848..294194) Streptococcus gordonii str. Challis substr. CH1 5598471 YP_001449596.1 CDS pyrA NC_009785.1 294430 295368 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group; dihydroorotate dehydrogenase 1A 294430..295368 Streptococcus gordonii str. Challis substr. CH1 5599798 YP_001449597.1 CDS msrA NC_009785.1 295532 296467 D identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase msrA/msrB 295532..296467 Streptococcus gordonii str. Challis substr. CH1 5599737 YP_001449598.1 CDS SGO_0279 NC_009785.1 296552 297238 D putative lipoprotein 296552..297238 Streptococcus gordonii str. Challis substr. CH1 5599089 YP_001449599.1 CDS trzA NC_009785.1 297405 298601 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; chlorohydrolase 297405..298601 Streptococcus gordonii str. Challis substr. CH1 5598771 YP_001449600.1 CDS SGO_0281 NC_009785.1 298883 300772 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 298883..300772 Streptococcus gordonii str. Challis substr. CH1 5599741 YP_001449601.1 CDS SGO_0282 NC_009785.1 300929 302191 D cell wall polysaccharide biosynthesis protein 300929..302191 Streptococcus gordonii str. Challis substr. CH1 5599512 YP_001449602.1 CDS SGO_0283 NC_009785.1 302294 302521 D hypothetical protein 302294..302521 Streptococcus gordonii str. Challis substr. CH1 5597888 YP_001449603.1 CDS SGO_0284 NC_009785.1 302843 303715 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883; transcriptional regulator complement(302843..303715) Streptococcus gordonii str. Challis substr. CH1 5598234 YP_001449604.1 CDS pbg NC_009785.1 303826 305262 D identified by match to protein family HMM PF00232; phospho beta-glucosidase 303826..305262 Streptococcus gordonii str. Challis substr. CH1 5599090 YP_001449605.1 CDS SGO_0286 NC_009785.1 305385 307055 D identified by match to protein family HMM PF00488; DNA mismatch repair protein MutS 305385..307055 Streptococcus gordonii str. Challis substr. CH1 5597946 YP_001449606.1 CDS SGO_0287 NC_009785.1 307052 307879 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; haloacid dehalogenase-like hydrolase 307052..307879 Streptococcus gordonii str. Challis substr. CH1 5598868 YP_001449607.1 CDS SGO_0288 NC_009785.1 307932 308516 D identified by similarity to GB:AAM99985.1; match to protein family HMM PF00657; GDSL-like lipase/acylhydrolase 307932..308516 Streptococcus gordonii str. Challis substr. CH1 5598523 YP_001449608.1 CDS SGO_0289 NC_009785.1 308665 309060 D identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698; COPAB ATPases metal-fist type repressor 308665..309060 Streptococcus gordonii str. Challis substr. CH1 5599268 YP_001449609.1 CDS SGO_0290 NC_009785.1 309079 309450 D copper -translocating P-type ATPase 309079..309450 Streptococcus gordonii str. Challis substr. CH1 5599526 YP_001449610.1 CDS SGO_0291 NC_009785.1 309461 311683 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 309461..311683 Streptococcus gordonii str. Challis substr. CH1 5599128 YP_001449611.1 CDS spxB NC_009785.1 312135 313910 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720; pyruvate oxidase 312135..313910 Streptococcus gordonii str. Challis substr. CH1 5598536 YP_001449612.1 CDS SGO_0293 NC_009785.1 314064 314411 D identified by match to protein family HMM PF00903; glyoxalase 314064..314411 Streptococcus gordonii str. Challis substr. CH1 5599456 YP_001449613.1 CDS SGO_0294 NC_009785.1 314953 316527 D identified by match to protein family HMM PF00005; putative ABC transporter 314953..316527 Streptococcus gordonii str. Challis substr. CH1 5598651 YP_001449614.1 CDS SGO_0295 NC_009785.1 316618 316785 D hypothetical protein 316618..316785 Streptococcus gordonii str. Challis substr. CH1 5597734 YP_001449615.1 CDS SGO_0296 NC_009785.1 316778 317038 D integral membrane protein 316778..317038 Streptococcus gordonii str. Challis substr. CH1 5598652 YP_001449616.1 CDS arb NC_009785.1 317247 318686 D required for arbutin uptake and metabolism; 6-phospho-beta-glucosidase 317247..318686 Streptococcus gordonii str. Challis substr. CH1 5599430 YP_001449617.1 CDS SGO_0298 NC_009785.1 319070 319750 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 319070..319750 Streptococcus gordonii str. Challis substr. CH1 5598178 YP_001449618.1 CDS SGO_0299 NC_009785.1 319751 320626 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; putative histidine kinase 319751..320626 Streptococcus gordonii str. Challis substr. CH1 5597813 YP_001449619.1 CDS SGO_0300 NC_009785.1 320833 321555 R hypothetical protein complement(320833..321555) Streptococcus gordonii str. Challis substr. CH1 5599247 YP_001449620.1 CDS SGO_0301 NC_009785.1 321548 322480 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(321548..322480) Streptococcus gordonii str. Challis substr. CH1 5598082 YP_001449621.1 CDS SGO_0302 NC_009785.1 322628 323323 R hypothetical protein complement(322628..323323) Streptococcus gordonii str. Challis substr. CH1 5599296 YP_001449622.1 CDS SGO_0303 NC_009785.1 323336 324244 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(323336..324244) Streptococcus gordonii str. Challis substr. CH1 5599142 YP_001449623.1 CDS SGO_0304 NC_009785.1 324387 325079 R hypothetical protein complement(324387..325079) Streptococcus gordonii str. Challis substr. CH1 5598905 YP_001449624.1 CDS SGO_0305 NC_009785.1 325117 325875 R hypothetical protein complement(325117..325875) Streptococcus gordonii str. Challis substr. CH1 5598723 YP_001449625.1 CDS SGO_0306 NC_009785.1 325892 326800 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(325892..326800) Streptococcus gordonii str. Challis substr. CH1 5597835 YP_001449626.1 CDS pabB NC_009785.1 327021 328700 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553; chorismate binding protein complement(327021..328700) Streptococcus gordonii str. Challis substr. CH1 5598086 YP_001449627.1 CDS SGO_0308 NC_009785.1 328713 328805 D hypothetical protein 328713..328805 Streptococcus gordonii str. Challis substr. CH1 5599642 YP_001449628.1 CDS SGO_0309 NC_009785.1 328887 329258 D insulin activator factor 328887..329258 Streptococcus gordonii str. Challis substr. CH1 5599193 YP_001449629.1 CDS metE NC_009785.1 329538 331790 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 329538..331790 Streptococcus gordonii str. Challis substr. CH1 5598292 YP_001449630.1 CDS metF NC_009785.1 331928 332782 D identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 331928..332782 Streptococcus gordonii str. Challis substr. CH1 5598252 YP_001449631.1 CDS xfp NC_009785.1 333239 335623 D identified by match to protein family HMM PF03894; putative phosphoketolase 333239..335623 Streptococcus gordonii str. Challis substr. CH1 5599704 YP_001449632.1 CDS SGO_0313 NC_009785.1 335846 336688 D identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family phosphatase 335846..336688 Streptococcus gordonii str. Challis substr. CH1 5599740 YP_001449633.1 CDS SGO_0314 NC_009785.1 336700 337296 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 336700..337296 Streptococcus gordonii str. Challis substr. CH1 5598563 YP_001449634.1 CDS SGO_0315 NC_009785.1 337293 337904 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 337293..337904 Streptococcus gordonii str. Challis substr. CH1 5598913 YP_001449635.1 CDS SGO_0316 NC_009785.1 338351 342835 D identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; serine protease subtilase family LPXTG cell wall surface protein 338351..342835 Streptococcus gordonii str. Challis substr. CH1 5598026 YP_001449636.1 CDS SGO_0317 NC_009785.1 342920 347404 D identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; serine protease subtilase family LPXTG cell wall surface protein 342920..347404 Streptococcus gordonii str. Challis substr. CH1 5599733 YP_001449637.1 CDS SGO_0318 NC_009785.1 347496 347912 R hypothetical protein complement(347496..347912) Streptococcus gordonii str. Challis substr. CH1 5599515 YP_001449638.1 CDS SGO_0319 NC_009785.1 347893 348792 R hypothetical protein complement(347893..348792) Streptococcus gordonii str. Challis substr. CH1 5597786 YP_001449639.1 CDS SGO_0320 NC_009785.1 348789 349832 R identified by match to protein family HMM PF00535; dolichol-phosphate mannosyltransferase complement(348789..349832) Streptococcus gordonii str. Challis substr. CH1 5598188 YP_001449640.1 CDS def NC_009785.1 350062 350676 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(350062..350676) Streptococcus gordonii str. Challis substr. CH1 5599771 YP_001449641.1 CDS SGO_0322 NC_009785.1 350832 351974 D identified by match to protein family HMM PF07690; hypothetical protein 350832..351974 Streptococcus gordonii str. Challis substr. CH1 5598835 YP_001449642.1 CDS SGO_0323 NC_009785.1 351976 352704 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase rRNA-specific 351976..352704 Streptococcus gordonii str. Challis substr. CH1 5599519 YP_001449643.1 CDS SGO_0324 NC_009785.1 353178 354959 D hypothetical protein 353178..354959 Streptococcus gordonii str. Challis substr. CH1 5599423 YP_001449644.1 CDS SGO_0325 NC_009785.1 354961 355860 D hypothetical protein 354961..355860 Streptococcus gordonii str. Challis substr. CH1 5599435 YP_001449645.1 CDS SGO_0326 NC_009785.1 355870 357699 D hypothetical protein 355870..357699 Streptococcus gordonii str. Challis substr. CH1 5598591 YP_001449646.1 CDS SGO_0327 NC_009785.1 357720 359120 D identified by match to protein family HMM PF00534; lipopolysaccharide N-acetylglucosaminyltransferase 357720..359120 Streptococcus gordonii str. Challis substr. CH1 5598583 YP_001449647.1 CDS SGO_0328 NC_009785.1 359120 360565 D putative ortholog of TM1408; transmembrane protein 359120..360565 Streptococcus gordonii str. Challis substr. CH1 5597874 YP_001449648.1 CDS SGO_0329 NC_009785.1 360558 362333 D hypothetical protein 360558..362333 Streptococcus gordonii str. Challis substr. CH1 5597978 YP_001449649.1 CDS SGO_0330 NC_009785.1 362296 363054 D hypothetical protein 362296..363054 Streptococcus gordonii str. Challis substr. CH1 5599714 YP_001449650.1 CDS SGO_0331 NC_009785.1 363073 363744 D hypothetical protein 363073..363744 Streptococcus gordonii str. Challis substr. CH1 5598135 YP_001449651.1 CDS SGO_0332 NC_009785.1 363761 365146 D hypothetical protein 363761..365146 Streptococcus gordonii str. Challis substr. CH1 5598519 YP_001449652.1 CDS rpsO NC_009785.1 365374 365643 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 365374..365643 Streptococcus gordonii str. Challis substr. CH1 5599092 YP_001449653.1 CDS SGO_0334 NC_009785.1 366257 367183 R identified by match to protein family HMM PF00561; cinnamoyl ester hydrolase complement(366257..367183) Streptococcus gordonii str. Challis substr. CH1 5599605 YP_001449654.1 CDS SGO_0335 NC_009785.1 367472 367885 D hypothetical protein 367472..367885 Streptococcus gordonii str. Challis substr. CH1 5599576 YP_001449655.1 CDS SGO_0336 NC_009785.1 368075 368296 D hypothetical protein 368075..368296 Streptococcus gordonii str. Challis substr. CH1 5598983 YP_001449656.1 CDS trx-2 NC_009785.1 368312 368626 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 368312..368626 Streptococcus gordonii str. Challis substr. CH1 5598236 YP_001449657.1 CDS SGO_0338 NC_009785.1 368726 369394 R identified by match to protein family HMM PF00230; aquaporin Z, water channel protein complement(368726..369394) Streptococcus gordonii str. Challis substr. CH1 5599036 YP_001449658.1 CDS SGO_0339 NC_009785.1 369505 370296 R hypothetical protein complement(369505..370296) Streptococcus gordonii str. Challis substr. CH1 5598587 YP_001449659.1 CDS SGO_0340 NC_009785.1 370590 371180 D identified by match to protein family HMM PF07366; hypothetical protein 370590..371180 Streptococcus gordonii str. Challis substr. CH1 5599425 YP_001449660.1 CDS SGO_0341 NC_009785.1 371472 372116 R putative lipoprotein complement(371472..372116) Streptococcus gordonii str. Challis substr. CH1 5598521 YP_001449661.1 CDS pepF-2 NC_009785.1 372282 374078 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase complement(372282..374078) Streptococcus gordonii str. Challis substr. CH1 5599762 YP_001449662.1 CDS SGO_0343 NC_009785.1 374193 375554 R identified by match to protein family HMM PF07690; major facilitator transporter complement(374193..375554) Streptococcus gordonii str. Challis substr. CH1 5598574 YP_001449663.1 CDS pnpA NC_009785.1 376196 378382 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 376196..378382 Streptococcus gordonii str. Challis substr. CH1 5598659 YP_001449664.1 CDS cysE NC_009785.1 378469 379086 D identified by match to protein family HMM TIGR01172; serine O-acetyltransferase 378469..379086 Streptococcus gordonii str. Challis substr. CH1 5598295 YP_001449665.1 CDS SGO_0346 NC_009785.1 379135 379335 D hypothetical protein 379135..379335 Streptococcus gordonii str. Challis substr. CH1 5599046 YP_001449666.1 CDS SGO_0347 NC_009785.1 379349 380113 D purine nucleoside phosphorylase 379349..380113 Streptococcus gordonii str. Challis substr. CH1 5597929 YP_001449667.1 CDS SGO_0348 NC_009785.1 380122 380643 D reductase 380122..380643 Streptococcus gordonii str. Challis substr. CH1 5597932 YP_001449668.1 CDS cysS NC_009785.1 380661 382004 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 380661..382004 Streptococcus gordonii str. Challis substr. CH1 5598119 YP_001449669.1 CDS SGO_0350 NC_009785.1 381997 382401 D identified by match to protein family HMM PF00636; cysteinyl-tRNA synthetase 381997..382401 Streptococcus gordonii str. Challis substr. CH1 5598767 YP_001449670.1 CDS SGO_0351 NC_009785.1 382388 383263 D leucine-rich protein 382388..383263 Streptococcus gordonii str. Challis substr. CH1 5597790 YP_001449671.1 CDS SGO_0352 NC_009785.1 383372 384502 D identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; ABC transporter ATP-binding protein 383372..384502 Streptococcus gordonii str. Challis substr. CH1 5599748 YP_001449672.1 CDS SGO_0353 NC_009785.1 384885 386732 D transporter 384885..386732 Streptococcus gordonii str. Challis substr. CH1 5598846 YP_001449673.1 CDS SGO_0354 NC_009785.1 386800 387762 R identified by match to protein family HMM PF06081; membrane spanning protein complement(386800..387762) Streptococcus gordonii str. Challis substr. CH1 5598143 YP_001449674.1 CDS SGO_0355 NC_009785.1 387910 388641 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 387910..388641 Streptococcus gordonii str. Challis substr. CH1 5599538 YP_001449675.1 CDS SGO_0356 NC_009785.1 388641 389285 D hypothetical protein 388641..389285 Streptococcus gordonii str. Challis substr. CH1 5599472 YP_001449676.1 CDS degV NC_009785.1 389427 390290 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family fatty acid binding protein 389427..390290 Streptococcus gordonii str. Challis substr. CH1 5598618 YP_001449677.1 CDS rplM NC_009785.1 390486 390932 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 390486..390932 Streptococcus gordonii str. Challis substr. CH1 5599524 YP_001449678.1 CDS rpsI NC_009785.1 390952 391344 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 390952..391344 Streptococcus gordonii str. Challis substr. CH1 5599571 YP_001449679.1 CDS SGO_0360 NC_009785.1 391476 392630 R identified by match to protein family HMM PF00589; phage integrase family site specific recombinase complement(391476..392630) Streptococcus gordonii str. Challis substr. CH1 5598207 YP_001449680.1 CDS SGO_0361 NC_009785.1 392682 393200 R identified by match to protein family HMM PF01381; immunity repressor protein complement(392682..393200) Streptococcus gordonii str. Challis substr. CH1 5598422 YP_001449681.1 CDS SGO_0362 NC_009785.1 393348 393629 D hypothetical protein 393348..393629 Streptococcus gordonii str. Challis substr. CH1 5599479 YP_001449682.1 CDS SGO_0363 NC_009785.1 393638 394477 D identified by match to protein family HMM TIGR01714; gp49 bacteriophage-like protein 393638..394477 Streptococcus gordonii str. Challis substr. CH1 5598440 YP_001449683.1 CDS SGO_0364 NC_009785.1 394836 395168 D hypothetical protein 394836..395168 Streptococcus gordonii str. Challis substr. CH1 5597950 YP_001449684.1 CDS SGO_0365 NC_009785.1 395149 395343 D hypothetical protein 395149..395343 Streptococcus gordonii str. Challis substr. CH1 5599497 YP_001449685.1 CDS cadD NC_009785.1 396635 397249 D identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779; cadmium resistance protein 396635..397249 Streptococcus gordonii str. Challis substr. CH1 5598964 YP_001449686.1 CDS cadX NC_009785.1 397261 397599 D identified by match to protein family HMM PF01022; cadmium efflux protein 397261..397599 Streptococcus gordonii str. Challis substr. CH1 5597854 YP_001449687.1 CDS merA NC_009785.1 398290 400185 D identified by match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercury(II) reductase 398290..400185 Streptococcus gordonii str. Challis substr. CH1 5598726 YP_001449688.1 CDS SGO_0370 NC_009785.1 402256 403134 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; malolactic fermentation system transcriptional activator complement(402256..403134) Streptococcus gordonii str. Challis substr. CH1 5598802 YP_001449689.1 CDS SGO_0371 NC_009785.1 403260 403610 R identified by match to protein family HMM PF01381; putative transcriptional regulator complement(403260..403610) Streptococcus gordonii str. Challis substr. CH1 5598842 YP_001449690.1 CDS SGO_0372 NC_009785.1 403981 405606 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 403981..405606 Streptococcus gordonii str. Challis substr. CH1 5599634 YP_001449691.1 CDS SGO_0373 NC_009785.1 405683 406630 D identified by match to protein family HMM PF03547; malate permease 405683..406630 Streptococcus gordonii str. Challis substr. CH1 5598344 YP_001449692.1 CDS SGO_0374 NC_009785.1 407897 408631 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; response regulator 407897..408631 Streptococcus gordonii str. Challis substr. CH1 5599407 YP_001449693.1 CDS SGO_0376 NC_009785.1 410256 410936 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 410256..410936 Streptococcus gordonii str. Challis substr. CH1 5598221 YP_001449694.1 CDS SGO_0377 NC_009785.1 411043 411648 D hypothetical protein 411043..411648 Streptococcus gordonii str. Challis substr. CH1 5598805 YP_001449695.1 CDS SGO_0378 NC_009785.1 412000 412203 R identified by match to protein family HMM PF05532; hypothetical protein complement(412000..412203) Streptococcus gordonii str. Challis substr. CH1 5598278 YP_001449696.1 CDS SGO_0379 NC_009785.1 412385 413014 R identified by match to protein family HMM PF04239; hypothetical protein complement(412385..413014) Streptococcus gordonii str. Challis substr. CH1 5598878 YP_001449697.1 CDS SGO_0380 NC_009785.1 413014 413466 R hypothetical protein complement(413014..413466) Streptococcus gordonii str. Challis substr. CH1 5598159 YP_001449698.1 CDS SGO_0381 NC_009785.1 413751 414299 D hypothetical protein 413751..414299 Streptococcus gordonii str. Challis substr. CH1 5599288 YP_001449699.1 CDS SGO_0383 NC_009785.1 415141 416391 D identified by match to protein family HMM PF00375; proton/sodium- glutamate symport protein 415141..416391 Streptococcus gordonii str. Challis substr. CH1 5598441 YP_001449700.1 CDS SGO_0384 NC_009785.1 416406 417344 D putative carboxylate-amine/thiol ligase 416406..417344 Streptococcus gordonii str. Challis substr. CH1 5598953 YP_001449701.1 CDS SGO_0385 NC_009785.1 417623 421849 D identified by match to protein family HMM PF00251; match to protein family HMM PF00746; match to protein family HMM PF02368; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF08244; match to protein family HMM TIGR01167; exo-beta-D-fructosidase 417623..421849 Streptococcus gordonii str. Challis substr. CH1 5598685 YP_001449702.1 CDS SGO_0386 NC_009785.1 421998 422834 R identified by match to protein family HMM PF00376; multidrug ABC transporter complement(421998..422834) Streptococcus gordonii str. Challis substr. CH1 5599766 YP_001449703.1 CDS SGO_0387 NC_009785.1 422921 423955 D identified by match to protein family HMM PF01113; hypothetical protein 422921..423955 Streptococcus gordonii str. Challis substr. CH1 5598960 YP_001449704.1 CDS SGO_0388 NC_009785.1 424014 427271 R identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein, zinc carboxypeptidase family complement(424014..427271) Streptococcus gordonii str. Challis substr. CH1 5599311 YP_001449705.1 CDS SGO_0389 NC_009785.1 427586 427852 D ACT domain-containing protein; hypothetical protein 427586..427852 Streptococcus gordonii str. Challis substr. CH1 5597829 YP_001449706.1 CDS SGO_0390 NC_009785.1 427863 429200 D identified by match to protein family HMM PF05167; hypothetical protein 427863..429200 Streptococcus gordonii str. Challis substr. CH1 5597737 YP_001449707.1 CDS SGO_0391 NC_009785.1 429295 429945 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 429295..429945 Streptococcus gordonii str. Challis substr. CH1 5599613 YP_001449708.1 CDS SGO_0392 NC_009785.1 430010 430696 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 430010..430696 Streptococcus gordonii str. Challis substr. CH1 5599140 YP_001449709.1 CDS SGO_0393 NC_009785.1 430758 431498 D identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 430758..431498 Streptococcus gordonii str. Challis substr. CH1 5598434 YP_001449710.1 CDS SGO_0394 NC_009785.1 431617 432201 D hypothetical protein 431617..432201 Streptococcus gordonii str. Challis substr. CH1 5598371 YP_001449711.1 CDS SGO_0395 NC_009785.1 432198 432413 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 432198..432413 Streptococcus gordonii str. Challis substr. CH1 5599511 YP_001449712.1 CDS SGO_0396 NC_009785.1 432516 432839 D identified by match to protein family HMM PF01047; match to protein family HMM PF03551; PadR family transcriptional regulator 432516..432839 Streptococcus gordonii str. Challis substr. CH1 5599381 YP_001449713.1 CDS SGO_0397 NC_009785.1 432839 433411 D hypothetical protein 432839..433411 Streptococcus gordonii str. Challis substr. CH1 5598908 YP_001449714.1 CDS SGO_0398 NC_009785.1 433435 434292 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 433435..434292 Streptococcus gordonii str. Challis substr. CH1 5599718 YP_001449715.1 CDS SGO_0399 NC_009785.1 434285 435013 D hypothetical protein 434285..435013 Streptococcus gordonii str. Challis substr. CH1 5599075 YP_001449716.1 CDS hrcA NC_009785.1 435177 436211 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 435177..436211 Streptococcus gordonii str. Challis substr. CH1 5598784 YP_001449717.1 CDS grpE NC_009785.1 436247 436780 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 436247..436780 Streptococcus gordonii str. Challis substr. CH1 5598233 YP_001449718.1 CDS dnaK NC_009785.1 437031 438854 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 437031..438854 Streptococcus gordonii str. Challis substr. CH1 5598582 YP_001449719.1 CDS thiJ-2 NC_009785.1 439070 439702 D identified by match to protein family HMM PF01965; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein 439070..439702 Streptococcus gordonii str. Challis substr. CH1 5599413 YP_001449720.1 CDS dnaJ NC_009785.1 439999 441144 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 439999..441144 Streptococcus gordonii str. Challis substr. CH1 5599585 YP_001449721.1 CDS SGO_0405 NC_009785.1 441373 444945 D identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; Beta-N-acetylhexosaminidase 441373..444945 Streptococcus gordonii str. Challis substr. CH1 5599410 YP_001449722.1 CDS SGO_0406 NC_009785.1 445106 445579 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(445106..445579) Streptococcus gordonii str. Challis substr. CH1 5598359 YP_001449723.1 CDS truA NC_009785.1 445679 446428 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 445679..446428 Streptococcus gordonii str. Challis substr. CH1 5598962 YP_001449724.1 CDS zmpB NC_009785.1 446803 452745 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; zinc metalloproteinase B 446803..452745 Streptococcus gordonii str. Challis substr. CH1 5598709 YP_001449725.1 CDS SGO_0409 NC_009785.1 453129 453890 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 453129..453890 Streptococcus gordonii str. Challis substr. CH1 5599322 YP_001449726.1 CDS SGO_0410 NC_009785.1 453880 454362 D integral membrane protein 453880..454362 Streptococcus gordonii str. Challis substr. CH1 5598209 YP_001449727.1 CDS SGO_0411 NC_009785.1 454375 454938 D identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein 454375..454938 Streptococcus gordonii str. Challis substr. CH1 5599099 YP_001449728.1 CDS tig NC_009785.1 455027 456310 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 455027..456310 Streptococcus gordonii str. Challis substr. CH1 5598235 YP_001449729.1 CDS SGO_0413 NC_009785.1 456471 457058 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 456471..457058 Streptococcus gordonii str. Challis substr. CH1 5598854 YP_001449730.1 CDS SGO_0414 NC_009785.1 457209 457895 D hypothetical protein 457209..457895 Streptococcus gordonii str. Challis substr. CH1 5597736 YP_001449731.1 CDS secA NC_009785.1 458246 460762 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 458246..460762 Streptococcus gordonii str. Challis substr. CH1 5598646 YP_001449732.1 CDS SGO_0416 NC_009785.1 460785 461816 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 460785..461816 Streptococcus gordonii str. Challis substr. CH1 5598922 YP_001449733.1 CDS acpS NC_009785.1 461860 462294 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 461860..462294 Streptococcus gordonii str. Challis substr. CH1 5598264 YP_001449734.1 CDS alr NC_009785.1 462284 463390 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 462284..463390 Streptococcus gordonii str. Challis substr. CH1 5597855 YP_001449735.1 CDS recG NC_009785.1 463463 465478 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 463463..465478 Streptococcus gordonii str. Challis substr. CH1 5598008 YP_001449736.1 CDS SGO_0420 NC_009785.1 465516 465638 D hypothetical protein 465516..465638 Streptococcus gordonii str. Challis substr. CH1 5598745 YP_001449737.1 CDS SGO_0421 NC_009785.1 465900 467942 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein 465900..467942 Streptococcus gordonii str. Challis substr. CH1 5598743 YP_001449738.1 CDS SGO_0422 NC_009785.1 467935 468216 D identified by match to protein family HMM PF02302; PTS system lactose family IIB subunit 467935..468216 Streptococcus gordonii str. Challis substr. CH1 5597905 YP_001449739.1 CDS SGO_0423 NC_009785.1 468242 469528 D identified by match to protein family HMM PF04215; putative sugar-specific permease 468242..469528 Streptococcus gordonii str. Challis substr. CH1 5598130 YP_001449740.1 CDS trpA-1 NC_009785.1 469528 470214 D identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha 469528..470214 Streptococcus gordonii str. Challis substr. CH1 5599420 YP_001449741.1 CDS ansB NC_009785.1 470394 471356 R identified by match to protein family HMM PF00710; asparaginase complement(470394..471356) Streptococcus gordonii str. Challis substr. CH1 5598885 YP_001449742.1 CDS SGO_0426 NC_009785.1 471420 472811 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 471420..472811 Streptococcus gordonii str. Challis substr. CH1 5599007 YP_001449743.1 CDS SGO_0427 NC_009785.1 472849 473301 R identified by match to protein family HMM PF00582; universal stress protein complement(472849..473301) Streptococcus gordonii str. Challis substr. CH1 5599488 YP_001449744.1 CDS SGO_0428 NC_009785.1 473531 473653 D hypothetical protein 473531..473653 Streptococcus gordonii str. Challis substr. CH1 5599168 YP_001449745.1 CDS SGO_0429 NC_009785.1 473692 474906 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 473692..474906 Streptococcus gordonii str. Challis substr. CH1 5598692 YP_001449746.1 CDS SGO_0430 NC_009785.1 475283 477943 D identified by match to protein family HMM TIGR01167; LPXTG cell wall surface protein 475283..477943 Streptococcus gordonii str. Challis substr. CH1 5598018 YP_001449747.1 CDS SGO_0431 NC_009785.1 478229 479017 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 478229..479017 Streptococcus gordonii str. Challis substr. CH1 5599702 YP_001449748.1 CDS entB NC_009785.1 479017 479574 D identified by match to protein family HMM PF00857; isochorismatase family protein 479017..479574 Streptococcus gordonii str. Challis substr. CH1 5599248 YP_001449749.1 CDS SGO_0433 NC_009785.1 479571 479696 R hypothetical protein complement(479571..479696) Streptococcus gordonii str. Challis substr. CH1 5599078 YP_001449750.1 CDS aspS NC_009785.1 479974 481710 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 479974..481710 Streptococcus gordonii str. Challis substr. CH1 5598431 YP_001449751.1 CDS gatC NC_009785.1 481914 482216 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 481914..482216 Streptococcus gordonii str. Challis substr. CH1 5597890 YP_001449752.1 CDS gatA NC_009785.1 482216 483682 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 482216..483682 Streptococcus gordonii str. Challis substr. CH1 5599712 YP_001449753.1 CDS gatB NC_009785.1 483682 485115 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 483682..485115 Streptococcus gordonii str. Challis substr. CH1 5598553 YP_001449754.1 CDS SGO_0438 NC_009785.1 485184 485984 D hypothetical protein 485184..485984 Streptococcus gordonii str. Challis substr. CH1 5598176 YP_001449755.1 CDS SGO_0439 NC_009785.1 486077 486370 D hypothetical protein 486077..486370 Streptococcus gordonii str. Challis substr. CH1 5598894 YP_001449756.1 CDS SGO_0440 NC_009785.1 486602 487648 D identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-iditol 2-dehydrogenase 486602..487648 Streptococcus gordonii str. Challis substr. CH1 5597762 YP_001449757.1 CDS SGO_0441 NC_009785.1 487747 488658 D identified by match to protein family HMM PF00892; membrane protein 487747..488658 Streptococcus gordonii str. Challis substr. CH1 5598276 YP_001449758.1 CDS SGO_0442 NC_009785.1 488718 489344 R identified by match to protein family HMM PF09335; immunoreactive protein Se23.5-like protein complement(488718..489344) Streptococcus gordonii str. Challis substr. CH1 5598834 YP_001449759.1 CDS SGO_0443 NC_009785.1 489713 490195 D hypothetical protein 489713..490195 Streptococcus gordonii str. Challis substr. CH1 5598602 YP_001449760.1 CDS SGO_0444 NC_009785.1 490406 490915 D identified by match to protein family HMM TIGR01549; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD family phosphatase 490406..490915 Streptococcus gordonii str. Challis substr. CH1 5598125 YP_001449761.1 CDS SGO_0445 NC_009785.1 490918 492024 D in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 490918..492024 Streptococcus gordonii str. Challis substr. CH1 5599558 YP_001449762.1 CDS SGO_0446 NC_009785.1 492132 492443 D identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein 492132..492443 Streptococcus gordonii str. Challis substr. CH1 5599494 YP_001449763.1 CDS nadD NC_009785.1 492472 493104 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 492472..493104 Streptococcus gordonii str. Challis substr. CH1 5599341 YP_001449764.1 CDS SGO_0448 NC_009785.1 493101 493700 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein 493101..493700 Streptococcus gordonii str. Challis substr. CH1 5598197 YP_001449765.1 CDS SGO_0449 NC_009785.1 493697 494200 D identified by match to protein family HMM PF00857; isochorismatase family protein 493697..494200 Streptococcus gordonii str. Challis substr. CH1 5598565 YP_001449766.1 CDS SGO_0450 NC_009785.1 494210 494575 D identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap-like protein 494210..494575 Streptococcus gordonii str. Challis substr. CH1 5598933 YP_001449767.1 CDS SGO_0451 NC_009785.1 494651 495385 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 494651..495385 Streptococcus gordonii str. Challis substr. CH1 5597909 YP_001449768.1 CDS SGO_0452 NC_009785.1 495387 496478 D identified by match to protein family HMM PF05636; hypothetical protein 495387..496478 Streptococcus gordonii str. Challis substr. CH1 5598682 YP_001449769.1 CDS SGO_0453 NC_009785.1 496549 497379 D putative lipoprotein 496549..497379 Streptococcus gordonii str. Challis substr. CH1 5598819 YP_001449770.1 CDS SGO_0454 NC_009785.1 497609 498325 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 497609..498325 Streptococcus gordonii str. Challis substr. CH1 5599096 YP_001449771.1 CDS SGO_0455 NC_009785.1 498446 499555 D putative lipoprotein 498446..499555 Streptococcus gordonii str. Challis substr. CH1 5598403 YP_001449772.1 CDS ILL5 NC_009785.1 499666 500799 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amino acid aminohydrolase 499666..500799 Streptococcus gordonii str. Challis substr. CH1 5598011 YP_001449773.1 CDS SGO_0457 NC_009785.1 500988 501845 D ABC transporter protein SP0148; identified by match to protein family HMM PF00497; putative amino-acid-binding protein 500988..501845 Streptococcus gordonii str. Challis substr. CH1 5598863 YP_001449774.1 CDS hlpA NC_009785.1 501879 502742 D identified by match to protein family HMM PF03180; lipoprotein 501879..502742 Streptococcus gordonii str. Challis substr. CH1 5598617 YP_001449775.1 CDS SGO_0459 NC_009785.1 502866 504239 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; succinyl-diaminopimelate desuccinylase 502866..504239 Streptococcus gordonii str. Challis substr. CH1 5599335 YP_001449776.1 CDS SGO_0460 NC_009785.1 504232 505296 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein SP0151; methionine import ATP-binding protein metN 504232..505296 Streptococcus gordonii str. Challis substr. CH1 5598976 YP_001449777.1 CDS SGO_0461 NC_009785.1 505298 505990 D identified by match to protein family HMM PF00528; ABC transporter permease 505298..505990 Streptococcus gordonii str. Challis substr. CH1 5599100 YP_001449778.1 CDS SGO_0462 NC_009785.1 506027 506254 D hypothetical protein 506027..506254 Streptococcus gordonii str. Challis substr. CH1 5598498 YP_001449779.1 CDS cydD NC_009785.1 506199 507875 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein 506199..507875 Streptococcus gordonii str. Challis substr. CH1 5598064 YP_001449780.1 CDS cydC NC_009785.1 507865 509535 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein 507865..509535 Streptococcus gordonii str. Challis substr. CH1 5598515 YP_001449781.1 CDS SGO_0465 NC_009785.1 509532 510128 D identified by match to protein family HMM TIGR02185; hypothetical protein 509532..510128 Streptococcus gordonii str. Challis substr. CH1 5599864 YP_001449782.1 CDS SGO_0466 NC_009785.1 510125 510805 D identified by match to protein family HMM PF02361; hypothetical protein 510125..510805 Streptococcus gordonii str. Challis substr. CH1 5599715 YP_001449783.1 CDS SGO_0467 NC_009785.1 510766 512193 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 510766..512193 Streptococcus gordonii str. Challis substr. CH1 5598809 YP_001449784.1 CDS SGO_0468 NC_009785.1 512381 513226 D identified by match to protein family HMM PF01887; match to protein family HMM TIGR03304; hypothetical protein 512381..513226 Streptococcus gordonii str. Challis substr. CH1 5598724 YP_001449785.1 CDS SGO_0469 NC_009785.1 513250 513810 D identified by match to protein family HMM PF07155; hypothetical protein 513250..513810 Streptococcus gordonii str. Challis substr. CH1 5599636 YP_001449786.1 CDS SGO_0470 NC_009785.1 513949 514116 D hypothetical protein 513949..514116 Streptococcus gordonii str. Challis substr. CH1 5598192 YP_001449787.1 CDS SGO_0471 NC_009785.1 514113 514325 D identified by match to protein family HMM PF01381; DNA-binding protein 514113..514325 Streptococcus gordonii str. Challis substr. CH1 5599468 YP_001449788.1 CDS SGO_0472 NC_009785.1 514608 515105 D hypothetical protein 514608..515105 Streptococcus gordonii str. Challis substr. CH1 5598927 YP_001449789.1 CDS SGO_0473 NC_009785.1 515222 515620 D hypothetical protein 515222..515620 Streptococcus gordonii str. Challis substr. CH1 5599827 YP_001449790.1 CDS SGO_0474 NC_009785.1 515617 516294 D identified by match to protein family HMM PF02517; abortive infection protein 515617..516294 Streptococcus gordonii str. Challis substr. CH1 5598497 YP_001449791.1 CDS SGO_0475 NC_009785.1 516304 516792 D hypothetical protein 516304..516792 Streptococcus gordonii str. Challis substr. CH1 5599489 YP_001449792.1 CDS SGO_0476 NC_009785.1 516920 517906 D identified by match to protein family HMM PF00581; hypothetical protein 516920..517906 Streptococcus gordonii str. Challis substr. CH1 5598039 YP_001449793.1 CDS SGO_0477 NC_009785.1 518148 519092 R identified by match to protein family HMM PF01473; cell wall binding protein complement(518148..519092) Streptococcus gordonii str. Challis substr. CH1 5599196 YP_001449794.1 CDS SGO_0478 NC_009785.1 519464 520405 R identified by match to protein family HMM PF01473; cell wall binding protein complement(519464..520405) Streptococcus gordonii str. Challis substr. CH1 5597953 YP_001449795.1 CDS SGO_0479 NC_009785.1 520893 521696 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 520893..521696 Streptococcus gordonii str. Challis substr. CH1 5598400 YP_001449796.1 CDS SGO_0480 NC_009785.1 521753 522166 D identified by match to protein family HMM PF06983; hypothetical protein 521753..522166 Streptococcus gordonii str. Challis substr. CH1 5598129 YP_001449797.1 CDS SGO_0481 NC_009785.1 522176 522535 D hypothetical protein 522176..522535 Streptococcus gordonii str. Challis substr. CH1 5598604 YP_001449798.1 CDS SGO_0482 NC_009785.1 522962 523582 D identified by match to protein family HMM PF01965; ThiJ/PfpI family protein 522962..523582 Streptococcus gordonii str. Challis substr. CH1 5599429 YP_001449799.1 CDS SGO_0483 NC_009785.1 523732 524640 D hypothetical protein 523732..524640 Streptococcus gordonii str. Challis substr. CH1 5599449 YP_001449800.1 CDS SGO_0484 NC_009785.1 524793 526025 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(524793..526025) Streptococcus gordonii str. Challis substr. CH1 5599881 YP_001449801.1 CDS SGO_0485 NC_009785.1 526015 526701 R identified by match to protein family HMM PF00072; DNA-binding response regulator complement(526015..526701) Streptococcus gordonii str. Challis substr. CH1 5598230 YP_001449802.1 CDS SGO_0486 NC_009785.1 526705 527331 R identified by match to protein family HMM PF04607; GTP pyrophosphokinase family protein complement(526705..527331) Streptococcus gordonii str. Challis substr. CH1 5599730 YP_001449803.1 CDS SGO_0487 NC_009785.1 527547 528308 D phosphorylase Pnp/Udp family protein 527547..528308 Streptococcus gordonii str. Challis substr. CH1 5598503 YP_001449804.1 CDS SGO_0488 NC_009785.1 528319 530004 D ABC transporter; identified by match to protein family HMM PF00005; putative ABC transporter ATP-binding protein SP0483 528319..530004 Streptococcus gordonii str. Challis substr. CH1 5597850 YP_001449805.1 CDS SGO_0489 NC_009785.1 529991 530827 D identified by match to protein family HMM PF02361; cobalt transport family protein 529991..530827 Streptococcus gordonii str. Challis substr. CH1 5599038 YP_001449806.1 CDS SGO_0490 NC_009785.1 530847 531707 D identified by match to protein family HMM PF02517; CAAX amino protease 530847..531707 Streptococcus gordonii str. Challis substr. CH1 5599662 YP_001449807.1 CDS gidB NC_009785.1 531784 532497 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(531784..532497) Streptococcus gordonii str. Challis substr. CH1 5599107 YP_001449808.1 CDS SGO_0492 NC_009785.1 532576 533865 R identified by match to protein family HMM PF07690; macrolide-efflux protein complement(532576..533865) Streptococcus gordonii str. Challis substr. CH1 5598024 YP_001449809.1 CDS SGO_0493 NC_009785.1 533878 534480 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(533878..534480) Streptococcus gordonii str. Challis substr. CH1 5599690 YP_001449810.1 CDS lemA NC_009785.1 534696 535265 D identified by match to protein family HMM PF04011; LemA-like protein 534696..535265 Streptococcus gordonii str. Challis substr. CH1 5598994 YP_001449811.1 CDS htpx NC_009785.1 535267 536160 D putative metalloprotease; heat shock protein HtpX 535267..536160 Streptococcus gordonii str. Challis substr. CH1 5597852 YP_001449812.1 CDS rgg NC_009785.1 536544 537437 D identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; transcriptional regulator Rgg 536544..537437 Streptococcus gordonii str. Challis substr. CH1 5599746 YP_001449813.1 CDS gtfG NC_009785.1 537504 542234 D identified by match to protein family HMM PF01473; match to protein family HMM PF02324; glucosyltransferase G 537504..542234 Streptococcus gordonii str. Challis substr. CH1 5597906 YP_001449814.1 CDS dsg NC_009785.1 542385 543620 R identified by match to protein family HMM PF07690; putative permease complement(542385..543620) Streptococcus gordonii str. Challis substr. CH1 5599331 YP_001449815.1 CDS SGO_0499 NC_009785.1 543638 543760 D hypothetical protein 543638..543760 Streptococcus gordonii str. Challis substr. CH1 5598693 YP_001449816.1 CDS rggD NC_009785.1 543960 544829 R identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; putative transcriptional regulator RggD complement(543960..544829) Streptococcus gordonii str. Challis substr. CH1 5599480 YP_001449817.1 CDS SGO_0501 NC_009785.1 544928 545458 D identified by match to protein family HMM PF02620; hypothetical protein 544928..545458 Streptococcus gordonii str. Challis substr. CH1 5599240 YP_001449818.1 CDS floL NC_009785.1 545561 547042 D identified by match to protein family HMM PF01145; match to protein family HMM PF03149; flotillin-like protein 545561..547042 Streptococcus gordonii str. Challis substr. CH1 5598009 YP_001449819.1 CDS gnd NC_009785.1 547178 548602 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 547178..548602 Streptococcus gordonii str. Challis substr. CH1 5597967 YP_001449820.1 CDS SGO_0504 NC_009785.1 548615 549304 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 548615..549304 Streptococcus gordonii str. Challis substr. CH1 5599379 YP_001449821.1 CDS SGO_0505 NC_009785.1 549664 551856 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003; PTS system transporter subunit IIBC 549664..551856 Streptococcus gordonii str. Challis substr. CH1 5598190 YP_001449822.1 CDS rgfB NC_009785.1 551874 552689 D identified by match to protein family HMM PF03372; RgfB 551874..552689 Streptococcus gordonii str. Challis substr. CH1 5599801 YP_001449823.1 CDS SGO_0507 NC_009785.1 552832 553248 R hypothetical protein complement(552832..553248) Streptococcus gordonii str. Challis substr. CH1 5599302 YP_001449824.1 CDS nrdR NC_009785.1 553427 553900 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 553427..553900 Streptococcus gordonii str. Challis substr. CH1 5599385 YP_001449825.1 CDS SGO_0509 NC_009785.1 553901 555055 D identified by match to protein family HMM PF07261; replication initiation and membrane attachment protein DnaB 553901..555055 Streptococcus gordonii str. Challis substr. CH1 5599484 YP_001449826.1 CDS dnaI NC_009785.1 555056 555955 D Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 555056..555955 Streptococcus gordonii str. Challis substr. CH1 5598597 YP_001449827.1 CDS SGO_0511 NC_009785.1 555952 556668 D identified by match to protein family HMM PF00881; NADPH-flavin oxidoreductase -like protein 555952..556668 Streptococcus gordonii str. Challis substr. CH1 5598342 YP_001449828.1 CDS engA NC_009785.1 556711 558021 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 556711..558021 Streptococcus gordonii str. Challis substr. CH1 5598681 YP_001449829.1 CDS SGO_0513 NC_009785.1 558348 561437 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455; Snf2 family protein 558348..561437 Streptococcus gordonii str. Challis substr. CH1 5599074 YP_001449830.1 CDS SGO_0514 NC_009785.1 561552 562139 D hypothetical protein 561552..562139 Streptococcus gordonii str. Challis substr. CH1 5598303 YP_001449831.1 CDS murC NC_009785.1 562296 563627 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 562296..563627 Streptococcus gordonii str. Challis substr. CH1 5598395 YP_001449832.1 CDS SGO_0516 NC_009785.1 563640 564149 D identified by match to protein family HMM PF00583; acetyltransferase 563640..564149 Streptococcus gordonii str. Challis substr. CH1 5598256 YP_001449833.1 CDS SGO_0517 NC_009785.1 564153 564653 D identified by match to protein family HMM PF00583; acetyltransferase 564153..564653 Streptococcus gordonii str. Challis substr. CH1 5599236 YP_001449834.1 CDS SGO_0518 NC_009785.1 564729 566360 D identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; aminodeoxychorismate lyase-like protein 564729..566360 Streptococcus gordonii str. Challis substr. CH1 5599696 YP_001449835.1 CDS greA NC_009785.1 566458 566940 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 566458..566940 Streptococcus gordonii str. Challis substr. CH1 5598798 YP_001449836.1 CDS SGO_0520 NC_009785.1 566988 567092 D hypothetical protein 566988..567092 Streptococcus gordonii str. Challis substr. CH1 5598548 YP_001449837.1 CDS SGO_0521 NC_009785.1 567641 568573 R involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor complement(567641..568573) Streptococcus gordonii str. Challis substr. CH1 5599176 YP_001449838.1 CDS SGO_0522 NC_009785.1 568650 568928 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(568650..568928) Streptococcus gordonii str. Challis substr. CH1 5598896 YP_001449839.1 CDS SGO_0523 NC_009785.1 568997 569737 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; spoU rRNA methylase family protein 568997..569737 Streptococcus gordonii str. Challis substr. CH1 5597916 YP_001449840.1 CDS SGO_0524 NC_009785.1 569782 570273 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HD domain-containing protein 569782..570273 Streptococcus gordonii str. Challis substr. CH1 5599050 YP_001449841.1 CDS SGO_0525 NC_009785.1 570291 570977 D identified by match to protein family HMM PF01027; membrane protein 570291..570977 Streptococcus gordonii str. Challis substr. CH1 5599612 YP_001449842.1 CDS ilvB NC_009785.1 571447 573162 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase catalytic subunit 571447..573162 Streptococcus gordonii str. Challis substr. CH1 5599164 YP_001449843.1 CDS ilvH NC_009785.1 573155 573631 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 573155..573631 Streptococcus gordonii str. Challis substr. CH1 5598205 YP_001449844.1 CDS ilvC NC_009785.1 573723 574745 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 573723..574745 Streptococcus gordonii str. Challis substr. CH1 5599266 YP_001449845.1 CDS ilvA NC_009785.1 574932 576182 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 574932..576182 Streptococcus gordonii str. Challis substr. CH1 5598387 YP_001449846.1 CDS SGO_0530 NC_009785.1 576332 577144 R identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(576332..577144) Streptococcus gordonii str. Challis substr. CH1 5598977 YP_001449847.1 CDS SGO_0531 NC_009785.1 577305 577907 D identified by match to protein family HMM PF07099; hypothetical protein 577305..577907 Streptococcus gordonii str. Challis substr. CH1 5598931 YP_001449848.1 CDS SGO_0532 NC_009785.1 578013 579437 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 578013..579437 Streptococcus gordonii str. Challis substr. CH1 5598804 YP_001449849.1 CDS SGO_0533 NC_009785.1 579484 579966 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 579484..579966 Streptococcus gordonii str. Challis substr. CH1 5599337 YP_001449850.1 CDS SGO_0534 NC_009785.1 579984 580490 D identified by match to protein family HMM PF00583; acetyltransferase 579984..580490 Streptococcus gordonii str. Challis substr. CH1 5598850 YP_001449851.1 CDS SGO_0535 NC_009785.1 580497 581708 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; putative transcriptional regulator LytR 580497..581708 Streptococcus gordonii str. Challis substr. CH1 5598244 YP_001449852.1 CDS SGO_0536 NC_009785.1 581756 582058 R hypothetical protein complement(581756..582058) Streptococcus gordonii str. Challis substr. CH1 5598711 YP_001449853.1 CDS SGO_0537 NC_009785.1 582069 582590 R identified by match to protein family HMM PF01230; HIT family protein complement(582069..582590) Streptococcus gordonii str. Challis substr. CH1 5597989 YP_001449854.1 CDS SGO_0538 NC_009785.1 582624 583355 D identified by match to protein family HMM PF00005; ATP-binding protein SP0522; ABC-type transporter ATP-binding protein 582624..583355 Streptococcus gordonii str. Challis substr. CH1 5599705 YP_001449855.1 CDS SGO_0539 NC_009785.1 583352 584407 D identified by match to protein family HMM PF05975; ABC transporter permease 583352..584407 Streptococcus gordonii str. Challis substr. CH1 5599104 YP_001449856.1 CDS SGO_0540 NC_009785.1 584448 585242 D identified by match to protein family HMM PF01636; hypothetical protein 584448..585242 Streptococcus gordonii str. Challis substr. CH1 5598592 YP_001449857.1 CDS trmB NC_009785.1 585239 585877 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 585239..585877 Streptococcus gordonii str. Challis substr. CH1 5599679 YP_001449858.1 CDS SGO_0542 NC_009785.1 585986 586474 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 585986..586474 Streptococcus gordonii str. Challis substr. CH1 5598631 YP_001449859.1 CDS nusA NC_009785.1 586520 587761 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 586520..587761 Streptococcus gordonii str. Challis substr. CH1 5598564 YP_001449860.1 CDS SGO_0544 NC_009785.1 587772 588068 D identified by match to protein family HMM PF04296; hypothetical protein 587772..588068 Streptococcus gordonii str. Challis substr. CH1 5599622 YP_001449861.1 CDS SGO_0545 NC_009785.1 588061 588360 D identified by match to protein family HMM PF01248; hypothetical protein 588061..588360 Streptococcus gordonii str. Challis substr. CH1 5598095 YP_001449862.1 CDS infB NC_009785.1 588378 591239 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 588378..591239 Streptococcus gordonii str. Challis substr. CH1 5599109 YP_001449863.1 CDS rbfA NC_009785.1 591425 591772 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 591425..591772 Streptococcus gordonii str. Challis substr. CH1 5598281 YP_001449864.1 CDS SGO_0548 NC_009785.1 591917 593548 D identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein 591917..593548 Streptococcus gordonii str. Challis substr. CH1 5598742 YP_001449865.1 CDS nagA NC_009785.1 593710 594861 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 593710..594861 Streptococcus gordonii str. Challis substr. CH1 5599307 YP_001449866.1 CDS SGO_0550 NC_009785.1 594836 594982 D hypothetical protein 594836..594982 Streptococcus gordonii str. Challis substr. CH1 5598030 YP_001449867.1 CDS SGO_0551 NC_009785.1 595013 595210 D hypothetical protein 595013..595210 Streptococcus gordonii str. Challis substr. CH1 5598928 YP_001449868.1 CDS SGO_0552 NC_009785.1 595290 596135 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 595290..596135 Streptococcus gordonii str. Challis substr. CH1 5599708 YP_001449869.1 CDS SGO_0553 NC_009785.1 596136 596588 D acetyltransferase 596136..596588 Streptococcus gordonii str. Challis substr. CH1 5599736 YP_001449870.1 CDS hsdR NC_009785.1 596725 599712 D identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease 596725..599712 Streptococcus gordonii str. Challis substr. CH1 5598123 YP_001449871.1 CDS SGO_0555 NC_009785.1 599723 600574 D hypothetical protein 599723..600574 Streptococcus gordonii str. Challis substr. CH1 5599188 YP_001449872.1 CDS SGO_0556 NC_009785.1 600516 602996 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DNA helicase-like protein 600516..602996 Streptococcus gordonii str. Challis substr. CH1 5598812 YP_001449873.1 CDS SGO_0557 NC_009785.1 603001 604209 D identified by match to protein family HMM PF01420; HsdS specificity protein of type I restriction-modification system 603001..604209 Streptococcus gordonii str. Challis substr. CH1 5597951 YP_001449874.1 CDS SGO_0558 NC_009785.1 604233 604997 D hypothetical protein 604233..604997 Streptococcus gordonii str. Challis substr. CH1 5597828 YP_001449875.1 CDS SGO_0559 NC_009785.1 605068 605946 D hypothetical protein 605068..605946 Streptococcus gordonii str. Challis substr. CH1 5597961 YP_001449876.1 CDS hsdM NC_009785.1 605957 607564 D identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 605957..607564 Streptococcus gordonii str. Challis substr. CH1 5599158 YP_001449877.1 CDS SGO_0561 NC_009785.1 607694 608032 D hypothetical protein 607694..608032 Streptococcus gordonii str. Challis substr. CH1 5598769 YP_001449878.1 CDS SGO_0562 NC_009785.1 608025 609110 D identified by match to protein family HMM PF01381; match to protein family HMM PF06114; match to protein family HMM TIGR02607; helix-turn-helix domain-containing protein 608025..609110 Streptococcus gordonii str. Challis substr. CH1 5598423 YP_001449879.1 CDS SGO_0563 NC_009785.1 609295 609480 D hypothetical protein 609295..609480 Streptococcus gordonii str. Challis substr. CH1 5599301 YP_001449880.1 CDS SGO_0564 NC_009785.1 609493 609858 D identified by match to protein family HMM TIGR02328; hypothetical protein 609493..609858 Streptococcus gordonii str. Challis substr. CH1 5599731 YP_001449881.1 CDS adhA NC_009785.1 610155 611177 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase complement(610155..611177) Streptococcus gordonii str. Challis substr. CH1 5597825 YP_001449882.1 CDS sgc NC_009785.1 611500 616041 D identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04650; match to protein family HMM PF06280; match to protein family HMM PF07554; match to protein family HMM TIGR01168; serine protease challisin 611500..616041 Streptococcus gordonii str. Challis substr. CH1 5598916 YP_001449883.1 CDS SGO_0567 NC_009785.1 616290 616382 D hypothetical protein 616290..616382 Streptococcus gordonii str. Challis substr. CH1 5599093 YP_001449884.1 CDS glyQ NC_009785.1 616401 617318 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 616401..617318 Streptococcus gordonii str. Challis substr. CH1 5598231 YP_001449885.1 CDS glyS NC_009785.1 617321 619360 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 617321..619360 Streptococcus gordonii str. Challis substr. CH1 5597865 YP_001449886.1 CDS SGO_0570 NC_009785.1 619383 619640 D identified by match to protein family HMM PF05979; hypothetical protein 619383..619640 Streptococcus gordonii str. Challis substr. CH1 5599019 YP_001449887.1 CDS SGO_0571 NC_009785.1 619855 620394 R hypothetical protein complement(619855..620394) Streptococcus gordonii str. Challis substr. CH1 5598332 YP_001449888.1 CDS SGO_0572 NC_009785.1 620440 620655 R identified by match to protein family HMM PF01381; transcriptional regulator complement(620440..620655) Streptococcus gordonii str. Challis substr. CH1 5599252 YP_001449889.1 CDS mraW NC_009785.1 620840 621790 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 620840..621790 Streptococcus gordonii str. Challis substr. CH1 5598219 YP_001449890.1 CDS ftsL NC_009785.1 621799 622119 D identified by match to protein family HMM TIGR02209; cell division protein FtsL 621799..622119 Streptococcus gordonii str. Challis substr. CH1 5598470 YP_001449891.1 CDS pbp2X NC_009785.1 622123 624378 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 2X 622123..624378 Streptococcus gordonii str. Challis substr. CH1 5597846 YP_001449892.1 CDS mraY NC_009785.1 624380 625363 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 624380..625363 Streptococcus gordonii str. Challis substr. CH1 5597831 YP_001449893.1 CDS SGO_0577 NC_009785.1 625463 626806 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase 625463..626806 Streptococcus gordonii str. Challis substr. CH1 5598055 YP_001449894.1 CDS SGO_0578 NC_009785.1 626976 627785 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 626976..627785 Streptococcus gordonii str. Challis substr. CH1 5599583 YP_001449895.1 CDS SGO_0579 NC_009785.1 627785 628528 D identified by match to protein family HMM PF00005; amino acid ABC transporter ATP binding protein 627785..628528 Streptococcus gordonii str. Challis substr. CH1 5598280 YP_001449896.1 CDS SGO_0580 NC_009785.1 628634 628858 D hypothetical protein 628634..628858 Streptococcus gordonii str. Challis substr. CH1 5597812 YP_001449897.1 CDS trxB NC_009785.1 628922 629836 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 628922..629836 Streptococcus gordonii str. Challis substr. CH1 5598642 YP_001449898.1 CDS SGO_0582 NC_009785.1 630049 631509 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 630049..631509 Streptococcus gordonii str. Challis substr. CH1 5598778 YP_001449899.1 CDS nadE NC_009785.1 631506 632330 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 631506..632330 Streptococcus gordonii str. Challis substr. CH1 5598183 YP_001449900.1 CDS SGO_0584 NC_009785.1 632378 632938 D identified by match to protein family HMM PF00583; acetyltransferase 632378..632938 Streptococcus gordonii str. Challis substr. CH1 5598390 YP_001449901.1 CDS pepC NC_009785.1 633017 634351 D identified by match to protein family HMM PF03051; aminopeptidase C 633017..634351 Streptococcus gordonii str. Challis substr. CH1 5599156 YP_001449902.1 CDS pbp1a NC_009785.1 634463 636601 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A complement(634463..636601) Streptococcus gordonii str. Challis substr. CH1 5599735 YP_001449903.1 CDS recU NC_009785.1 636594 637196 R functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease complement(636594..637196) Streptococcus gordonii str. Challis substr. CH1 5598666 YP_001449904.1 CDS SGO_0588 NC_009785.1 637262 637789 D identified by match to protein family HMM PF06908; hypothetical protein 637262..637789 Streptococcus gordonii str. Challis substr. CH1 5598675 YP_001449905.1 CDS SGO_0589 NC_009785.1 637859 638209 D identified by match to protein family HMM PF05103; methylase 637859..638209 Streptococcus gordonii str. Challis substr. CH1 5599149 YP_001449906.1 CDS SGO_0590 NC_009785.1 638750 639916 D identified by match to protein family HMM PF01170; methyltransferase 638750..639916 Streptococcus gordonii str. Challis substr. CH1 5598898 YP_001449907.1 CDS SGO_0591 NC_009785.1 639919 641325 D hypothetical protein 639919..641325 Streptococcus gordonii str. Challis substr. CH1 5599125 YP_001449908.1 CDS luxS NC_009785.1 641386 641868 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(641386..641868) Streptococcus gordonii str. Challis substr. CH1 5598322 YP_001449909.1 CDS SGO_0593 NC_009785.1 642100 643707 D identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319; hypothetical protein 642100..643707 Streptococcus gordonii str. Challis substr. CH1 5599623 YP_001449910.1 CDS gmk NC_009785.1 643822 644448 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 643822..644448 Streptococcus gordonii str. Challis substr. CH1 5598507 YP_001449911.1 CDS SGO_0595 NC_009785.1 644476 644787 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 644476..644787 Streptococcus gordonii str. Challis substr. CH1 5599641 YP_001449912.1 CDS priA NC_009785.1 644908 647289 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 644908..647289 Streptococcus gordonii str. Challis substr. CH1 5599483 YP_001449913.1 CDS fmt NC_009785.1 647302 648237 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 647302..648237 Streptococcus gordonii str. Challis substr. CH1 5599147 YP_001449914.1 CDS sun NC_009785.1 648227 649540 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 648227..649540 Streptococcus gordonii str. Challis substr. CH1 5598258 YP_001449915.1 CDS SGO_0599 NC_009785.1 649561 650301 D identified by match to protein family HMM PF00481; phosphoprotein phosphatase 649561..650301 Streptococcus gordonii str. Challis substr. CH1 5598891 YP_001449916.1 CDS SGO_0600 NC_009785.1 650298 652151 D identified by match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 650298..652151 Streptococcus gordonii str. Challis substr. CH1 5599446 YP_001449917.1 CDS SGO_0601 NC_009785.1 652325 653023 D hypothetical protein 652325..653023 Streptococcus gordonii str. Challis substr. CH1 5598585 YP_001449918.1 CDS SGO_0602 NC_009785.1 653068 654021 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase 653068..654021 Streptococcus gordonii str. Challis substr. CH1 5598914 YP_001449919.1 CDS SGO_0603 NC_009785.1 654011 654655 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 654011..654655 Streptococcus gordonii str. Challis substr. CH1 5599469 YP_001449920.1 CDS SGO_0604 NC_009785.1 654743 656146 D identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; peptidyl-prolyl cis-trans isomerase 654743..656146 Streptococcus gordonii str. Challis substr. CH1 5598904 YP_001449921.1 CDS SGO_0605 NC_009785.1 656143 656529 D identified by match to protein family HMM PF00575; hypothetical protein 656143..656529 Streptococcus gordonii str. Challis substr. CH1 5599818 YP_001449922.1 CDS cysK NC_009785.1 656566 657495 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(656566..657495) Streptococcus gordonii str. Challis substr. CH1 5598712 YP_001449923.1 CDS SGO_0607 NC_009785.1 657593 658240 R identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(657593..658240) Streptococcus gordonii str. Challis substr. CH1 5598877 YP_001449924.1 CDS comFA NC_009785.1 658281 659582 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; competence ComFA-like protein 658281..659582 Streptococcus gordonii str. Challis substr. CH1 5598605 YP_001449925.1 CDS comFC NC_009785.1 659579 660244 D competence protein ComFC 659579..660244 Streptococcus gordonii str. Challis substr. CH1 5597838 YP_001449926.1 CDS SGO_0610 NC_009785.1 660330 660872 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 660330..660872 Streptococcus gordonii str. Challis substr. CH1 5598906 YP_001449927.1 CDS SGO_0624 NC_009785.1 667072 667389 R hypothetical protein complement(667072..667389) Streptococcus gordonii str. Challis substr. CH1 5598057 YP_001449928.1 CDS SGO_0625 NC_009785.1 667505 668038 R identified by match to protein family HMM PF04167; hypothetical protein complement(667505..668038) Streptococcus gordonii str. Challis substr. CH1 5598786 YP_001449929.1 CDS recX NC_009785.1 668128 668904 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(668128..668904) Streptococcus gordonii str. Challis substr. CH1 5599354 YP_001449930.1 CDS SGO_0627 NC_009785.1 668843 668947 R hypothetical protein complement(668843..668947) Streptococcus gordonii str. Challis substr. CH1 5599419 YP_001449931.1 CDS ymdC NC_009785.1 668931 669731 R identified by match to protein family HMM PF01636; 3'-aminoglycoside phosphotransferase-like protein complement(668931..669731) Streptococcus gordonii str. Challis substr. CH1 5598149 YP_001449932.1 CDS rumA-1 NC_009785.1 669769 671133 D identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 669769..671133 Streptococcus gordonii str. Challis substr. CH1 5599474 YP_001449933.1 CDS SGO_0630 NC_009785.1 671333 672037 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(671333..672037) Streptococcus gordonii str. Challis substr. CH1 5598789 YP_001449934.1 CDS SGO_0631 NC_009785.1 672105 673931 R identified by match to protein family HMM PF01266; alpha-glycerophosphate oxidase complement(672105..673931) Streptococcus gordonii str. Challis substr. CH1 5599027 YP_001449935.1 CDS glpK NC_009785.1 674000 675508 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(674000..675508) Streptococcus gordonii str. Challis substr. CH1 5599080 YP_001449936.1 CDS SGO_0633 NC_009785.1 675666 677093 R identified by match to protein family HMM PF05043; hypothetical protein complement(675666..677093) Streptococcus gordonii str. Challis substr. CH1 5597956 YP_001449937.1 CDS SGO_0634 NC_009785.1 677347 677577 D identified by match to protein family HMM PF08984; hypothetical protein 677347..677577 Streptococcus gordonii str. Challis substr. CH1 5598265 YP_001449938.1 CDS SGO_0635 NC_009785.1 677580 678941 D identified by match to protein family HMM PF01814; match to protein family HMM PF04282; match to protein family HMM PF08448; hypothetical protein 677580..678941 Streptococcus gordonii str. Challis substr. CH1 5599441 YP_001449939.1 CDS SGO_0636 NC_009785.1 678959 679222 D identified by match to protein family HMM PF08930; hypothetical protein 678959..679222 Streptococcus gordonii str. Challis substr. CH1 5599394 YP_001449940.1 CDS SGO_0637 NC_009785.1 679561 680109 D identified by match to protein family HMM PF00583; acetyltransferase 679561..680109 Streptococcus gordonii str. Challis substr. CH1 5599595 YP_001449941.1 CDS SGO_0638 NC_009785.1 680184 681485 D hypothetical protein 680184..681485 Streptococcus gordonii str. Challis substr. CH1 5598228 YP_001449942.1 CDS valS NC_009785.1 681485 684133 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 681485..684133 Streptococcus gordonii str. Challis substr. CH1 5599221 YP_001449943.1 CDS SGO_0640 NC_009785.1 684212 685471 D modification methylase 684212..685471 Streptococcus gordonii str. Challis substr. CH1 5599805 YP_001449944.1 CDS SGO_0641 NC_009785.1 685476 687926 D identified by match to protein family HMM PF02518; hypothetical protein 685476..687926 Streptococcus gordonii str. Challis substr. CH1 5598679 YP_001449945.1 CDS SGO_0642 NC_009785.1 687913 689673 D hypothetical protein 687913..689673 Streptococcus gordonii str. Challis substr. CH1 5598628 YP_001449946.1 CDS SGO_0643 NC_009785.1 689697 690917 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; cytosine-specific methyltransferase 689697..690917 Streptococcus gordonii str. Challis substr. CH1 5597834 YP_001449947.1 CDS SGO_0644 NC_009785.1 690988 692571 D hypothetical protein 690988..692571 Streptococcus gordonii str. Challis substr. CH1 5599442 YP_001449948.1 CDS SGO_0645 NC_009785.1 692644 692937 R hypothetical protein complement(692644..692937) Streptococcus gordonii str. Challis substr. CH1 5599675 YP_001449949.1 CDS SGO_0646 NC_009785.1 692915 693289 R hypothetical protein complement(692915..693289) Streptococcus gordonii str. Challis substr. CH1 5598378 YP_001449950.1 CDS SGO_0647 NC_009785.1 693286 694701 R identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein complement(693286..694701) Streptococcus gordonii str. Challis substr. CH1 5599619 YP_001449951.1 CDS SGO_0648 NC_009785.1 694705 695382 R identified by match to protein family HMM PF00717; match to protein family HMM PF01381; putative transcriptional repressor complement(694705..695382) Streptococcus gordonii str. Challis substr. CH1 5599372 YP_001449952.1 CDS SGO_0649 NC_009785.1 695525 696013 D hypothetical protein 695525..696013 Streptococcus gordonii str. Challis substr. CH1 5599663 YP_001449953.1 CDS SGO_0650 NC_009785.1 696095 696634 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 696095..696634 Streptococcus gordonii str. Challis substr. CH1 5598831 YP_001449954.1 CDS coaD NC_009785.1 696624 697118 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 696624..697118 Streptococcus gordonii str. Challis substr. CH1 5598160 YP_001449955.1 CDS SGO_0652 NC_009785.1 697105 698148 D hypothetical protein 697105..698148 Streptococcus gordonii str. Challis substr. CH1 5598334 YP_001449956.1 CDS SGO_0653 NC_009785.1 698320 698856 D identified by match to protein family HMM PF06265; hypothetical protein 698320..698856 Streptococcus gordonii str. Challis substr. CH1 5599599 YP_001449957.1 CDS SGO_0654 NC_009785.1 698866 699954 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 698866..699954 Streptococcus gordonii str. Challis substr. CH1 5598495 YP_001449958.1 CDS SGO_0655 NC_009785.1 699941 700480 D identified by match to protein family HMM PF04892; VanZF domain-containing protein 699941..700480 Streptococcus gordonii str. Challis substr. CH1 5598544 YP_001449959.1 CDS trpB-2 NC_009785.1 700846 702027 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 700846..702027 Streptococcus gordonii str. Challis substr. CH1 5598626 YP_001449960.1 CDS trpE NC_009785.1 702430 703788 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 702430..703788 Streptococcus gordonii str. Challis substr. CH1 5598793 YP_001449961.1 CDS SGO_0658 NC_009785.1 703785 704348 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 703785..704348 Streptococcus gordonii str. Challis substr. CH1 5599116 YP_001449962.1 CDS trpD NC_009785.1 704359 705363 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 704359..705363 Streptococcus gordonii str. Challis substr. CH1 5598346 YP_001449963.1 CDS trpC NC_009785.1 705360 706127 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 705360..706127 Streptococcus gordonii str. Challis substr. CH1 5597876 YP_001449964.1 CDS trpF NC_009785.1 706114 706701 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 706114..706701 Streptococcus gordonii str. Challis substr. CH1 5599014 YP_001449965.1 CDS trpB-1 NC_009785.1 706691 707914 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 706691..707914 Streptococcus gordonii str. Challis substr. CH1 5599215 YP_001449966.1 CDS trpA NC_009785.1 707907 708686 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 707907..708686 Streptococcus gordonii str. Challis substr. CH1 5599180 YP_001449967.1 CDS SGO_0664 NC_009785.1 708655 709317 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type 4 prepilin peptidase complement(708655..709317) Streptococcus gordonii str. Challis substr. CH1 5598662 YP_001449968.1 CDS SGO_0665 NC_009785.1 709486 710001 D identified by match to protein family HMM PF00210; non-heme iron-containing ferritin 709486..710001 Streptococcus gordonii str. Challis substr. CH1 5598763 YP_001449969.1 CDS SGO_0666 NC_009785.1 710143 710403 D identified by match to protein family HMM PF06014; hypothetical protein 710143..710403 Streptococcus gordonii str. Challis substr. CH1 5598967 YP_001449970.1 CDS SGO_0667 NC_009785.1 710391 710777 D identified by match to protein family HMM PF00581; rhodanese family protein 710391..710777 Streptococcus gordonii str. Challis substr. CH1 5598491 YP_001449971.1 CDS rsuA NC_009785.1 710943 711668 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A complement(710943..711668) Streptococcus gordonii str. Challis substr. CH1 5599360 YP_001449972.1 CDS typA NC_009785.1 711850 713697 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 711850..713697 Streptococcus gordonii str. Challis substr. CH1 5599797 YP_001449973.1 CDS SGO_0670 NC_009785.1 713721 713999 D hypothetical protein 713721..713999 Streptococcus gordonii str. Challis substr. CH1 5599059 YP_001449974.1 CDS murD NC_009785.1 714244 715596 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 714244..715596 Streptococcus gordonii str. Challis substr. CH1 5598489 YP_001449975.1 CDS murG NC_009785.1 715598 716668 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 715598..716668 Streptococcus gordonii str. Challis substr. CH1 5597957 YP_001449976.1 CDS divIB NC_009785.1 716665 717858 D identified by match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein DivIB 716665..717858 Streptococcus gordonii str. Challis substr. CH1 5598869 YP_001449977.1 CDS ftsA NC_009785.1 717958 719358 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 717958..719358 Streptococcus gordonii str. Challis substr. CH1 5598539 YP_001449978.1 CDS ftsZ NC_009785.1 719375 720634 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 719375..720634 Streptococcus gordonii str. Challis substr. CH1 5599087 YP_001449979.1 CDS SGO_0676 NC_009785.1 720637 721308 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 720637..721308 Streptococcus gordonii str. Challis substr. CH1 5598691 YP_001449980.1 CDS SGO_0677 NC_009785.1 721318 721887 D identified by match to protein family HMM PF04472; ylmF protein 721318..721887 Streptococcus gordonii str. Challis substr. CH1 5599246 YP_001449981.1 CDS SGO_0678 NC_009785.1 721889 722155 D identified by match to protein family HMM PF02325; cell division protein 721889..722155 Streptococcus gordonii str. Challis substr. CH1 5598594 YP_001449982.1 CDS SGO_0679 NC_009785.1 722119 722946 D identified by match to protein family HMM PF01479; S4 domain-containing protein 722119..722946 Streptococcus gordonii str. Challis substr. CH1 5598187 YP_001449983.1 CDS SGO_0680 NC_009785.1 722956 723696 D identified by match to protein family HMM PF05103; cell division protein DivIVA 722956..723696 Streptococcus gordonii str. Challis substr. CH1 5599001 YP_001449984.1 CDS ileS NC_009785.1 723962 726754 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 723962..726754 Streptococcus gordonii str. Challis substr. CH1 5598687 YP_001449985.1 CDS SGO_0682 NC_009785.1 726892 727308 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01978; transcriptional regulator complement(726892..727308) Streptococcus gordonii str. Challis substr. CH1 5598875 YP_001449986.1 CDS SGO_0684 NC_009785.1 727846 728145 R identified by match to protein family HMM PF08860; hypothetical protein complement(727846..728145) Streptococcus gordonii str. Challis substr. CH1 5598948 YP_001449987.1 CDS SGO_0685 NC_009785.1 728244 728696 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(728244..728696) Streptococcus gordonii str. Challis substr. CH1 5598216 YP_001449988.1 CDS SGO_0686 NC_009785.1 728855 729745 D identified by match to protein family HMM PF08279; DeoR family transcriptional regulator 728855..729745 Streptococcus gordonii str. Challis substr. CH1 5599570 YP_001449989.1 CDS SGO_0687 NC_009785.1 729805 730410 D hypothetical protein 729805..730410 Streptococcus gordonii str. Challis substr. CH1 5598420 YP_001449990.1 CDS SGO_0688 NC_009785.1 730461 732722 R identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP dependent Clp protease, ATP-binding subunit, ClpE complement(730461..732722) Streptococcus gordonii str. Challis substr. CH1 5598075 YP_001449991.1 CDS SGO_0689 NC_009785.1 732976 733206 D identified by match to protein family HMM PF08796; hypothetical protein 732976..733206 Streptococcus gordonii str. Challis substr. CH1 5599170 YP_001449992.1 CDS folD NC_009785.1 733340 734194 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 733340..734194 Streptococcus gordonii str. Challis substr. CH1 5597908 YP_001449993.1 CDS SGO_0691 NC_009785.1 734191 734964 D identified by match to protein family HMM PF08282; hypothetical protein 734191..734964 Streptococcus gordonii str. Challis substr. CH1 5599687 YP_001449994.1 CDS SGO_0692 NC_009785.1 735072 735914 D identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; putative carbohydrate kinase 735072..735914 Streptococcus gordonii str. Challis substr. CH1 5599533 YP_001449995.1 CDS xseA NC_009785.1 736071 737411 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 736071..737411 Streptococcus gordonii str. Challis substr. CH1 5598710 YP_001449996.1 CDS xseB NC_009785.1 737389 737601 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 737389..737601 Streptococcus gordonii str. Challis substr. CH1 5599262 YP_001449997.1 CDS SGO_0695 NC_009785.1 737598 738473 D identified by match to protein family HMM PF00348; geranyltranstransferase 737598..738473 Streptococcus gordonii str. Challis substr. CH1 5599344 YP_001449998.1 CDS SGO_0696 NC_009785.1 738466 739281 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin-like protein 738466..739281 Streptococcus gordonii str. Challis substr. CH1 5598989 YP_001449999.1 CDS SGO_0697 NC_009785.1 739274 739705 D identified by match to protein family HMM PF01316; match to protein family HMM PF02863; transcriptional regulator 739274..739705 Streptococcus gordonii str. Challis substr. CH1 5599738 YP_001450000.1 CDS recN NC_009785.1 739713 741371 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN 739713..741371 Streptococcus gordonii str. Challis substr. CH1 5599454 YP_001450001.1 CDS SGO_0699 NC_009785.1 741409 742137 D identified by match to protein family HMM PF00149; serine/threonine protein phosphatase 741409..742137 Streptococcus gordonii str. Challis substr. CH1 5599032 YP_001450002.1 CDS SGO_0700 NC_009785.1 742201 743034 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 742201..743034 Streptococcus gordonii str. Challis substr. CH1 5599114 YP_001450003.1 CDS hup NC_009785.1 743179 743454 D identified by match to protein family HMM PF00216; DNA-binding histone-like protein HU 743179..743454 Streptococcus gordonii str. Challis substr. CH1 5598475 YP_001450004.1 CDS SGO_0702 NC_009785.1 743307 743543 R hypothetical protein complement(743307..743543) Streptococcus gordonii str. Challis substr. CH1 5598509 YP_001450005.1 CDS SGO_0703 NC_009785.1 743752 744222 D identified by match to protein family HMM PF01475; ferric transport regulator protein 743752..744222 Streptococcus gordonii str. Challis substr. CH1 5598935 YP_001450006.1 CDS gpmA NC_009785.1 744384 745076 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 744384..745076 Streptococcus gordonii str. Challis substr. CH1 5599788 YP_001450007.1 CDS SGO_0705 NC_009785.1 745168 745401 D identified by match to protein family HMM PF06855; hypothetical protein 745168..745401 Streptococcus gordonii str. Challis substr. CH1 5599316 YP_001450008.1 CDS SGO_0706 NC_009785.1 745486 746484 D identified by match to protein family HMM PF00013; match to protein family HMM PF02562; phoH-like protein 745486..746484 Streptococcus gordonii str. Challis substr. CH1 5598259 YP_001450009.1 CDS SGO_0707 NC_009785.1 746873 751804 D identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 746873..751804 Streptococcus gordonii str. Challis substr. CH1 5599557 YP_001450010.1 CDS ald NC_009785.1 752015 753127 R identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(752015..753127) Streptococcus gordonii str. Challis substr. CH1 5598676 YP_001450011.1 CDS SGO_0709 NC_009785.1 753320 753889 D identified by match to protein family HMM PF00583; acetyltransferase 753320..753889 Streptococcus gordonii str. Challis substr. CH1 5599609 YP_001450012.1 CDS SGO_0711 NC_009785.1 754238 754735 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 754238..754735 Streptococcus gordonii str. Challis substr. CH1 5597795 YP_001450013.1 CDS dgkA NC_009785.1 754716 755114 D identified by match to protein family HMM PF01219; diacylglycerol kinase (DAGK) (diglyceride kinase)(DGK) 754716..755114 Streptococcus gordonii str. Challis substr. CH1 5598260 YP_001450014.1 CDS era NC_009785.1 755181 756080 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 755181..756080 Streptococcus gordonii str. Challis substr. CH1 5599226 YP_001450015.1 CDS SGO_0714 NC_009785.1 756107 756889 D identified by match to protein family HMM PF00561; hypothetical protein 756107..756889 Streptococcus gordonii str. Challis substr. CH1 5599359 YP_001450016.1 CDS mutM NC_009785.1 757038 757862 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 757038..757862 Streptococcus gordonii str. Challis substr. CH1 5599416 YP_001450017.1 CDS coaE NC_009785.1 757868 758464 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 757868..758464 Streptococcus gordonii str. Challis substr. CH1 5598995 YP_001450018.1 CDS SGO_0717 NC_009785.1 758514 759680 D identified by match to protein family HMM PF07690; multi-drug resistance efflux pump 758514..759680 Streptococcus gordonii str. Challis substr. CH1 5598609 YP_001450019.1 CDS secG NC_009785.1 759862 760095 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 759862..760095 Streptococcus gordonii str. Challis substr. CH1 5598300 YP_001450020.1 CDS rnr NC_009785.1 760181 762529 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 760181..762529 Streptococcus gordonii str. Challis substr. CH1 5599028 YP_001450021.1 CDS smpB NC_009785.1 762492 762959 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 762492..762959 Streptococcus gordonii str. Challis substr. CH1 5599404 YP_001450022.1 CDS SGO_0721 NC_009785.1 763211 764941 D identified by match to protein family HMM PF03577; abpB-like dipeptidase lipoprotein 763211..764941 Streptococcus gordonii str. Challis substr. CH1 5598851 YP_001450023.1 CDS tehB NC_009785.1 765120 765980 D with TehA confers resistance to tellurite; tellurite resistance protein TehB 765120..765980 Streptococcus gordonii str. Challis substr. CH1 5599626 YP_001450024.1 CDS SGO_0723 NC_009785.1 766208 766366 D hypothetical protein 766208..766366 Streptococcus gordonii str. Challis substr. CH1 5598621 YP_001450025.1 CDS SGO_0724 NC_009785.1 766290 767915 D identified by match to protein family HMM PF03577; dipeptidase 766290..767915 Streptococcus gordonii str. Challis substr. CH1 5599294 YP_001450026.1 CDS SGO_0725 NC_009785.1 767908 768720 D hypothetical protein 767908..768720 Streptococcus gordonii str. Challis substr. CH1 5598206 YP_001450027.1 CDS SGO_0726 NC_009785.1 768890 769450 R identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator complement(768890..769450) Streptococcus gordonii str. Challis substr. CH1 5599700 YP_001450028.1 CDS SGO_0727 NC_009785.1 769413 769511 D hypothetical protein 769413..769511 Streptococcus gordonii str. Challis substr. CH1 5599210 YP_001450029.1 CDS SGO_0728 NC_009785.1 769592 770293 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 769592..770293 Streptococcus gordonii str. Challis substr. CH1 5599750 YP_001450030.1 CDS SGO_0729 NC_009785.1 770295 773018 D identified by match to protein family HMM PF02687; ABC transporter permease 770295..773018 Streptococcus gordonii str. Challis substr. CH1 5599347 YP_001450031.1 CDS SGO_0730 NC_009785.1 773112 773960 D identified by match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 773112..773960 Streptococcus gordonii str. Challis substr. CH1 5598757 YP_001450032.1 CDS SGO_0731 NC_009785.1 774017 774466 D identified by match to protein family HMM PF02082; RRF2 family protein 774017..774466 Streptococcus gordonii str. Challis substr. CH1 5598139 YP_001450033.1 CDS SGO_0732 NC_009785.1 774706 774834 D hypothetical protein 774706..774834 Streptococcus gordonii str. Challis substr. CH1 5598871 YP_001450034.1 CDS SGO_0734 NC_009785.1 775796 776068 D identified by match to protein family HMM PF04024; PspC domain-containing protein 775796..776068 Streptococcus gordonii str. Challis substr. CH1 5598153 YP_001450035.1 CDS hprK NC_009785.1 776701 777636 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 776701..777636 Streptococcus gordonii str. Challis substr. CH1 5598890 YP_001450036.1 CDS lgt NC_009785.1 777629 778438 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 777629..778438 Streptococcus gordonii str. Challis substr. CH1 5598035 YP_001450037.1 CDS SGO_0738 NC_009785.1 778431 778814 D identified by match to protein family HMM PF06103; hypothetical protein 778431..778814 Streptococcus gordonii str. Challis substr. CH1 5599693 YP_001450038.1 CDS SGO_0739 NC_009785.1 778836 779279 D hypothetical protein 778836..779279 Streptococcus gordonii str. Challis substr. CH1 5598247 YP_001450039.1 CDS SGO_0740 NC_009785.1 779369 780169 D putative lipoprotein 779369..780169 Streptococcus gordonii str. Challis substr. CH1 5598166 YP_001450040.1 CDS SGO_0741 NC_009785.1 780212 780499 R hypothetical protein complement(780212..780499) Streptococcus gordonii str. Challis substr. CH1 5599402 YP_001450041.1 CDS SGO_0742 NC_009785.1 780694 781623 D identified by match to protein family HMM PF01136; U32 family peptidase 780694..781623 Streptococcus gordonii str. Challis substr. CH1 5598266 YP_001450042.1 CDS SGO_0743 NC_009785.1 781820 783106 D identified by match to protein family HMM PF01136; U32 family peptidase 781820..783106 Streptococcus gordonii str. Challis substr. CH1 5598732 YP_001450043.1 CDS SGO_0744 NC_009785.1 783142 783465 R hypothetical protein complement(783142..783465) Streptococcus gordonii str. Challis substr. CH1 5599465 YP_001450044.1 CDS SGO_0745 NC_009785.1 783620 783832 D hypothetical protein 783620..783832 Streptococcus gordonii str. Challis substr. CH1 5599531 YP_001450045.1 CDS bioY-1 NC_009785.1 783845 784399 R identified by match to protein family HMM PF02632; biotin synthase complement(783845..784399) Streptococcus gordonii str. Challis substr. CH1 5599566 YP_001450046.1 CDS SGO_0747 NC_009785.1 784830 785969 D putative methionine synthase 784830..785969 Streptococcus gordonii str. Challis substr. CH1 5599094 YP_001450047.1 CDS SGO_0748 NC_009785.1 785990 786721 D identified by match to protein family HMM PF04199; hypothetical protein 785990..786721 Streptococcus gordonii str. Challis substr. CH1 5599834 YP_001450048.1 CDS SGO_0749 NC_009785.1 787043 788392 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(787043..788392) Streptococcus gordonii str. Challis substr. CH1 5598629 YP_001450049.1 CDS SGO_0750 NC_009785.1 788595 789779 D identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 788595..789779 Streptococcus gordonii str. Challis substr. CH1 5598535 YP_001450050.1 CDS SGO_0751 NC_009785.1 789763 790458 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 789763..790458 Streptococcus gordonii str. Challis substr. CH1 5598915 YP_001450051.1 CDS SGO_0752 NC_009785.1 790459 791733 D identified by match to protein family HMM PF02687; ABC transporter ATP-binding protein 790459..791733 Streptococcus gordonii str. Challis substr. CH1 5599532 YP_001450052.1 CDS lysS NC_009785.1 791823 793313 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(791823..793313) Streptococcus gordonii str. Challis substr. CH1 5599716 YP_001450053.1 CDS SGO_0754 NC_009785.1 793405 794046 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(793405..794046) Streptococcus gordonii str. Challis substr. CH1 5599009 YP_001450054.1 CDS SGO_0755 NC_009785.1 794076 794552 R identified by match to protein family HMM PF04073; regulatory protein complement(794076..794552) Streptococcus gordonii str. Challis substr. CH1 5599406 YP_001450055.1 CDS SGO_0756 NC_009785.1 794552 795394 R identified by match to protein family HMM PF04018; integral membrane protein complement(794552..795394) Streptococcus gordonii str. Challis substr. CH1 5599598 YP_001450056.1 CDS SGO_0757 NC_009785.1 795535 796281 R identified by match to protein family HMM PF01183; U32 family peptidase complement(795535..796281) Streptococcus gordonii str. Challis substr. CH1 5597866 YP_001450057.1 CDS SGO_0758 NC_009785.1 796449 796925 R identified by match to protein family HMM PF00255; glutathione peroxidase complement(796449..796925) Streptococcus gordonii str. Challis substr. CH1 5598765 YP_001450058.1 CDS SGO_0759 NC_009785.1 797062 798273 D identified by match to protein family HMM PF01098; cell division protein FtsW 797062..798273 Streptococcus gordonii str. Challis substr. CH1 5598312 YP_001450059.1 CDS ppc NC_009785.1 798325 801171 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 798325..801171 Streptococcus gordonii str. Challis substr. CH1 5599235 YP_001450060.1 CDS tuf NC_009785.1 801466 802662 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 801466..802662 Streptococcus gordonii str. Challis substr. CH1 5597804 YP_001450061.1 CDS tpiA NC_009785.1 802936 803694 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 802936..803694 Streptococcus gordonii str. Challis substr. CH1 5598731 YP_001450062.1 CDS murA-1 NC_009785.1 804097 805377 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 804097..805377 Streptococcus gordonii str. Challis substr. CH1 5597863 YP_001450063.1 CDS SGO_0764 NC_009785.1 805364 805558 D hypothetical protein 805364..805558 Streptococcus gordonii str. Challis substr. CH1 5598707 YP_001450064.1 CDS endA NC_009785.1 805603 806442 D identified by match to protein family HMM PF01223; DNA-entry nuclease 805603..806442 Streptococcus gordonii str. Challis substr. CH1 5598911 YP_001450065.1 CDS SGO_0766 NC_009785.1 806658 807359 R alpha-beta hydrolase superfamily esterase complement(806658..807359) Streptococcus gordonii str. Challis substr. CH1 5599635 YP_001450066.1 CDS SGO_0767 NC_009785.1 807340 808209 R identified by match to protein family HMM PF01497; transporter complement(807340..808209) Streptococcus gordonii str. Challis substr. CH1 5598141 YP_001450067.1 CDS SGO_0768 NC_009785.1 808199 808393 D hypothetical protein 808199..808393 Streptococcus gordonii str. Challis substr. CH1 5597973 YP_001450068.1 CDS SGO_0769 NC_009785.1 808513 809268 R identified by match to protein family HMM PF00005; iron compound transport ATP-binding protein complement(808513..809268) Streptococcus gordonii str. Challis substr. CH1 5598356 YP_001450069.1 CDS SGO_0770 NC_009785.1 809270 810316 R identified by match to protein family HMM PF01032; iron ABC transporter complement(809270..810316) Streptococcus gordonii str. Challis substr. CH1 5598360 YP_001450070.1 CDS pepq NC_009785.1 810767 811849 R identified by match to protein family HMM PF00557; match to protein family HMM PF01321; proline dipeptidase complement(810767..811849) Streptococcus gordonii str. Challis substr. CH1 5599786 YP_001450071.1 CDS SGO_0772 NC_009785.1 811832 811954 D hypothetical protein 811832..811954 Streptococcus gordonii str. Challis substr. CH1 5598558 YP_001450072.1 CDS ccpA NC_009785.1 812014 813018 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A 812014..813018 Streptococcus gordonii str. Challis substr. CH1 5599471 YP_001450073.1 CDS SGO_0774 NC_009785.1 813196 814161 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 813196..814161 Streptococcus gordonii str. Challis substr. CH1 5598038 YP_001450074.1 CDS SGO_0775 NC_009785.1 814163 815476 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 814163..815476 Streptococcus gordonii str. Challis substr. CH1 5598610 YP_001450075.1 CDS SGO_0776 NC_009785.1 815512 815874 D hypothetical protein 815512..815874 Streptococcus gordonii str. Challis substr. CH1 5599000 YP_001450076.1 CDS SGO_0777 NC_009785.1 816208 816579 D hypothetical protein 816208..816579 Streptococcus gordonii str. Challis substr. CH1 5598657 YP_001450077.1 CDS thrS NC_009785.1 816671 818614 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 816671..818614 Streptococcus gordonii str. Challis substr. CH1 5599030 YP_001450078.1 CDS SGO_0779 NC_009785.1 818820 819521 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator 818820..819521 Streptococcus gordonii str. Challis substr. CH1 5598404 YP_001450079.1 CDS SGO_0780 NC_009785.1 819514 820875 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; histidine kinase 819514..820875 Streptococcus gordonii str. Challis substr. CH1 5597853 YP_001450080.1 CDS vicX NC_009785.1 820868 821671 D identified by match to protein family HMM PF00753; zinc-dependent hydrolase 820868..821671 Streptococcus gordonii str. Challis substr. CH1 5598697 YP_001450081.1 CDS SGO_0782 NC_009785.1 821706 822062 D identified by match to protein family HMM PF04304; hypothetical protein 821706..822062 Streptococcus gordonii str. Challis substr. CH1 5597823 YP_001450082.1 CDS rnc NC_009785.1 822305 823003 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 822305..823003 Streptococcus gordonii str. Challis substr. CH1 5598815 YP_001450083.1 CDS smc NC_009785.1 822994 826527 D identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 822994..826527 Streptococcus gordonii str. Challis substr. CH1 5598222 YP_001450084.1 CDS SGO_0785 NC_009785.1 826529 827326 D identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 826529..827326 Streptococcus gordonii str. Challis substr. CH1 5599659 YP_001450085.1 CDS SGO_0786 NC_009785.1 827323 828132 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 827323..828132 Streptococcus gordonii str. Challis substr. CH1 5599861 YP_001450086.1 CDS ftsY NC_009785.1 828151 829740 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cell division protein FtsY 828151..829740 Streptococcus gordonii str. Challis substr. CH1 5597844 YP_001450087.1 CDS zwf NC_009785.1 829785 831245 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(829785..831245) Streptococcus gordonii str. Challis substr. CH1 5598283 YP_001450088.1 CDS SGO_0789 NC_009785.1 831376 832191 R ABC transporter; identified by match to protein family HMM PF09323; substrate-binding transport protein complement(831376..832191) Streptococcus gordonii str. Challis substr. CH1 5599198 YP_001450089.1 CDS SGO_0790 NC_009785.1 832188 833093 R identified by match to protein family HMM PF03773; permease family protein complement(832188..833093) Streptococcus gordonii str. Challis substr. CH1 5599314 YP_001450090.1 CDS SGO_0791 NC_009785.1 833090 833227 R hypothetical protein complement(833090..833227) Streptococcus gordonii str. Challis substr. CH1 5599779 YP_001450091.1 CDS SGO_0792 NC_009785.1 833398 835530 D identified by match to protein family HMM PF00575; hypothetical protein 833398..835530 Streptococcus gordonii str. Challis substr. CH1 5598756 YP_001450092.1 CDS SGO_0793 NC_009785.1 835517 835957 D identified by match to protein family HMM PF03926; hypothetical protein 835517..835957 Streptococcus gordonii str. Challis substr. CH1 5599506 YP_001450093.1 CDS SGO_0794 NC_009785.1 836125 837786 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 836125..837786 Streptococcus gordonii str. Challis substr. CH1 5598506 YP_001450094.1 CDS SGO_0795 NC_009785.1 837837 838628 D identified by match to protein family HMM PF00756; tributyrin esterase 837837..838628 Streptococcus gordonii str. Challis substr. CH1 5599122 YP_001450095.1 CDS SGO_0796 NC_009785.1 838765 839478 D identified by match to protein family HMM PF00413; hypothetical protein 838765..839478 Streptococcus gordonii str. Challis substr. CH1 5597886 YP_001450096.1 CDS SGO_0797 NC_009785.1 839965 841581 D RocB protein 839965..841581 Streptococcus gordonii str. Challis substr. CH1 5599060 YP_001450097.1 CDS SGO_0798 NC_009785.1 841697 842440 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 841697..842440 Streptococcus gordonii str. Challis substr. CH1 5597935 YP_001450098.1 CDS SGO_0799 NC_009785.1 842430 844058 D hypothetical protein 842430..844058 Streptococcus gordonii str. Challis substr. CH1 5599774 YP_001450099.1 CDS SGO_0800 NC_009785.1 844079 845020 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(844079..845020) Streptococcus gordonii str. Challis substr. CH1 5598384 YP_001450100.1 CDS hom NC_009785.1 845140 846426 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 845140..846426 Streptococcus gordonii str. Challis substr. CH1 5598102 YP_001450101.1 CDS thrB NC_009785.1 846428 847294 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 846428..847294 Streptococcus gordonii str. Challis substr. CH1 5598411 YP_001450102.1 CDS SGO_0803 NC_009785.1 847385 848308 D hypothetical protein 847385..848308 Streptococcus gordonii str. Challis substr. CH1 5598750 YP_001450103.1 CDS murB NC_009785.1 848405 849313 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 848405..849313 Streptococcus gordonii str. Challis substr. CH1 5599412 YP_001450104.1 CDS potA NC_009785.1 849526 850683 D identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA 849526..850683 Streptococcus gordonii str. Challis substr. CH1 5598661 YP_001450105.1 CDS potB NC_009785.1 850664 851470 D identified by match to protein family HMM PF00528; spermidine/putrescine import ATP-binding protein PotB 850664..851470 Streptococcus gordonii str. Challis substr. CH1 5599709 YP_001450106.1 CDS potC NC_009785.1 851467 852240 D identified by match to protein family HMM PF00528; spermidine/putrescine import ATP-binding protein PotC 851467..852240 Streptococcus gordonii str. Challis substr. CH1 5599727 YP_001450107.1 CDS potD NC_009785.1 852237 853307 D identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter 852237..853307 Streptococcus gordonii str. Challis substr. CH1 5598844 YP_001450108.1 CDS SGO_0809 NC_009785.1 853341 853748 R hypothetical protein complement(853341..853748) Streptococcus gordonii str. Challis substr. CH1 5598226 YP_001450109.1 CDS ppdK NC_009785.1 854039 856660 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(854039..856660) Streptococcus gordonii str. Challis substr. CH1 5599199 YP_001450110.1 CDS SGO_0811 NC_009785.1 856895 857533 D identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 856895..857533 Streptococcus gordonii str. Challis substr. CH1 5597792 YP_001450111.1 CDS SGO_0812 NC_009785.1 857536 858348 D identified by match to protein family HMM PF03618; hypothetical protein 857536..858348 Streptococcus gordonii str. Challis substr. CH1 5599628 YP_001450112.1 CDS SGO_0813 NC_009785.1 858404 860314 D identified by match to protein family HMM PF06874; fructose-bisphosphatase 858404..860314 Streptococcus gordonii str. Challis substr. CH1 5597948 YP_001450113.1 CDS SGO_0814 NC_009785.1 860414 861556 D identified by match to protein family HMM PF00266; class-V aminotransferase 860414..861556 Streptococcus gordonii str. Challis substr. CH1 5599804 YP_001450114.1 CDS thiI NC_009785.1 861560 862774 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 861560..862774 Streptococcus gordonii str. Challis substr. CH1 5597826 YP_001450115.1 CDS SGO_0816 NC_009785.1 862796 863317 D hypothetical protein 862796..863317 Streptococcus gordonii str. Challis substr. CH1 5598997 YP_001450116.1 CDS SGO_0817 NC_009785.1 863420 864013 D hypothetical protein 863420..864013 Streptococcus gordonii str. Challis substr. CH1 5598568 YP_001450117.1 CDS rplU NC_009785.1 864233 864547 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 864233..864547 Streptococcus gordonii str. Challis substr. CH1 5599852 YP_001450118.1 CDS SGO_0819 NC_009785.1 864563 864907 D identified by match to protein family HMM PF04327; ribosomal protein 864563..864907 Streptococcus gordonii str. Challis substr. CH1 5598575 YP_001450119.1 CDS rpmA NC_009785.1 864925 865218 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 864925..865218 Streptococcus gordonii str. Challis substr. CH1 5598457 YP_001450120.1 CDS SGO_0821 NC_009785.1 865384 865689 D identified by match to protein family HMM PF00581; rhodanese family protein 865384..865689 Streptococcus gordonii str. Challis substr. CH1 5597952 YP_001450121.1 CDS SGO_0822 NC_009785.1 865749 866276 R putative lipoprotein complement(865749..866276) Streptococcus gordonii str. Challis substr. CH1 5599491 YP_001450122.1 CDS SGO_0823 NC_009785.1 866506 867318 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(866506..867318) Streptococcus gordonii str. Challis substr. CH1 5598070 YP_001450123.1 CDS lepA NC_009785.1 867441 869264 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 867441..869264 Streptococcus gordonii str. Challis substr. CH1 5599376 YP_001450124.1 CDS SGO_0825 NC_009785.1 869308 869943 D putative lipoprotein 869308..869943 Streptococcus gordonii str. Challis substr. CH1 5598987 YP_001450125.1 CDS SGO_0826 NC_009785.1 870034 870528 D identified by match to protein family HMM PF03692; hypothetical protein 870034..870528 Streptococcus gordonii str. Challis substr. CH1 5599845 YP_001450126.1 CDS SGO_0827 NC_009785.1 870726 871559 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 870726..871559 Streptococcus gordonii str. Challis substr. CH1 5599611 YP_001450127.1 CDS SGO_0828 NC_009785.1 871613 872539 D hypothetical protein 871613..872539 Streptococcus gordonii str. Challis substr. CH1 5598859 YP_001450128.1 CDS SGO_0829 NC_009785.1 872745 873434 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD superfamily hydrolase 872745..873434 Streptococcus gordonii str. Challis substr. CH1 5597942 YP_001450129.1 CDS uvrC NC_009785.1 873477 875312 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 873477..875312 Streptococcus gordonii str. Challis substr. CH1 5599348 YP_001450130.1 CDS SGO_0831 NC_009785.1 875466 875705 R hypothetical protein complement(875466..875705) Streptococcus gordonii str. Challis substr. CH1 5599661 YP_001450131.1 CDS SGO_0832 NC_009785.1 875683 876027 D hypothetical protein 875683..876027 Streptococcus gordonii str. Challis substr. CH1 5599725 YP_001450132.1 CDS SGO_0833 NC_009785.1 876285 877130 D identified by match to protein family HMM PF00149; phosphoesterase-related gene 876285..877130 Streptococcus gordonii str. Challis substr. CH1 5598078 YP_001450133.1 CDS SGO_0834 NC_009785.1 877137 878801 D hypothetical protein 877137..878801 Streptococcus gordonii str. Challis substr. CH1 5597873 YP_001450134.1 CDS SGO_0835 NC_009785.1 878916 879521 D identified by match to protein family HMM PF00881; nitroreductase 878916..879521 Streptococcus gordonii str. Challis substr. CH1 5598301 YP_001450135.1 CDS pepV NC_009785.1 879568 880971 D divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 879568..880971 Streptococcus gordonii str. Challis substr. CH1 5598381 YP_001450136.1 CDS SGO_0837 NC_009785.1 881024 881608 D identified by match to protein family HMM PF03167; uracil-DNA glycosylase 881024..881608 Streptococcus gordonii str. Challis substr. CH1 5599817 YP_001450137.1 CDS SGO_0838 NC_009785.1 881621 882109 D identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase associated domain-containing protein 881621..882109 Streptococcus gordonii str. Challis substr. CH1 5597801 YP_001450138.1 CDS SGO_0839 NC_009785.1 882164 882487 D identified by match to protein family HMM PF04993; TfoX domain-containing protein 882164..882487 Streptococcus gordonii str. Challis substr. CH1 5599475 YP_001450139.1 CDS SGO_0840 NC_009785.1 882649 883098 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 882649..883098 Streptococcus gordonii str. Challis substr. CH1 5598267 YP_001450140.1 CDS SGO_0841 NC_009785.1 883275 884267 D identified by match to protein family HMM PF08240; oxidoreductase 883275..884267 Streptococcus gordonii str. Challis substr. CH1 5599333 YP_001450141.1 CDS SGO_0842 NC_009785.1 884254 884550 D identified by match to protein family HMM PF00581; rhodanese family protein 884254..884550 Streptococcus gordonii str. Challis substr. CH1 5599276 YP_001450142.1 CDS SGO_0843 NC_009785.1 884661 885410 D identified by match to protein family HMM PF02557; carboxypeptidase 884661..885410 Streptococcus gordonii str. Challis substr. CH1 5599879 YP_001450143.1 CDS SGO_0844 NC_009785.1 885471 885761 D hypothetical protein 885471..885761 Streptococcus gordonii str. Challis substr. CH1 5598120 YP_001450144.1 CDS SGO_0845 NC_009785.1 885851 886723 R identified by match to protein family HMM PF01473; cell wall binding protein complement(885851..886723) Streptococcus gordonii str. Challis substr. CH1 5598803 YP_001450145.1 CDS SGO_0846 NC_009785.1 887524 889527 D identified by match to protein family HMM PF00188; cell wall protein 887524..889527 Streptococcus gordonii str. Challis substr. CH1 5598000 YP_001450146.1 CDS SGO_0847 NC_009785.1 889751 891178 D identified by match to protein family HMM PF00188; SCP-like extracellular protein 889751..891178 Streptococcus gordonii str. Challis substr. CH1 5599495 YP_001450147.1 CDS rpmE NC_009785.1 891332 891616 R identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 complement(891332..891616) Streptococcus gordonii str. Challis substr. CH1 5598762 YP_001450148.1 CDS SGO_0849 NC_009785.1 891673 892617 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein complement(891673..892617) Streptococcus gordonii str. Challis substr. CH1 5599352 YP_001450149.1 CDS SGO_0850 NC_009785.1 892734 893177 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 892734..893177 Streptococcus gordonii str. Challis substr. CH1 5598570 YP_001450150.1 CDS SGO_0851 NC_009785.1 893328 894494 D identified by match to protein family HMM PF01594; putative permease 893328..894494 Streptococcus gordonii str. Challis substr. CH1 5597841 YP_001450151.1 CDS SGO_0852 NC_009785.1 894502 895719 D identified by similarity to GB:AAO81340.1; match to protein family HMM PF00515; hypothetical protein 894502..895719 Streptococcus gordonii str. Challis substr. CH1 5599179 YP_001450152.1 CDS budA NC_009785.1 895840 896559 D identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase 895840..896559 Streptococcus gordonii str. Challis substr. CH1 5598028 YP_001450153.1 CDS cshA NC_009785.1 896889 904412 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; surface-associated protein CshA 896889..904412 Streptococcus gordonii str. Challis substr. CH1 5599390 YP_001450154.1 CDS fbpA NC_009785.1 904490 906142 R identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein A complement(904490..906142) Streptococcus gordonii str. Challis substr. CH1 5598186 YP_001450155.1 CDS SGO_0856 NC_009785.1 906706 907710 D identified by match to protein family HMM PF04392; ABC transporter substrate binding protein 906706..907710 Streptococcus gordonii str. Challis substr. CH1 5597754 YP_001450156.1 CDS SGO_0857 NC_009785.1 907777 908643 D identified by match to protein family HMM PF02653; ABC transporter permease 907777..908643 Streptococcus gordonii str. Challis substr. CH1 5598624 YP_001450157.1 CDS SGO_0858 NC_009785.1 908640 909398 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 908640..909398 Streptococcus gordonii str. Challis substr. CH1 5597798 YP_001450158.1 CDS pheS NC_009785.1 910329 911378 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 910329..911378 Streptococcus gordonii str. Challis substr. CH1 5599135 YP_001450159.1 CDS SGO_0860 NC_009785.1 911424 911933 D identified by match to protein family HMM PF00583; acetyltransferase 911424..911933 Streptococcus gordonii str. Challis substr. CH1 5597773 YP_001450160.1 CDS pheT NC_009785.1 911992 914589 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 911992..914589 Streptococcus gordonii str. Challis substr. CH1 5597963 YP_001450161.1 CDS SGO_0862 NC_009785.1 914703 915416 D hypothetical protein 914703..915416 Streptococcus gordonii str. Challis substr. CH1 5598302 YP_001450162.1 CDS SGO_0863 NC_009785.1 915568 915960 D identified by match to protein family HMM PF08349; hypothetical protein 915568..915960 Streptococcus gordonii str. Challis substr. CH1 5599167 YP_001450163.1 CDS SGO_0865 NC_009785.1 917845 918030 D hypothetical protein 917845..918030 Streptococcus gordonii str. Challis substr. CH1 5597900 YP_001450164.1 CDS SGO_0867 NC_009785.1 918604 918813 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 918604..918813 Streptococcus gordonii str. Challis substr. CH1 5598505 YP_001450165.1 CDS SGO_0868 NC_009785.1 918816 919004 D hypothetical protein 918816..919004 Streptococcus gordonii str. Challis substr. CH1 5599496 YP_001450166.1 CDS SGO_0869 NC_009785.1 919140 919379 D hypothetical protein 919140..919379 Streptococcus gordonii str. Challis substr. CH1 5599317 YP_001450167.1 CDS SGO_0870 NC_009785.1 919886 920176 R hypothetical protein complement(919886..920176) Streptococcus gordonii str. Challis substr. CH1 5598054 YP_001450168.1 CDS SGO_0872 NC_009785.1 920741 920971 D putative cytoplasmic protein 920741..920971 Streptococcus gordonii str. Challis substr. CH1 5599152 YP_001450169.1 CDS SGO_0873 NC_009785.1 920999 921430 D putative cytoplasmic protein 920999..921430 Streptococcus gordonii str. Challis substr. CH1 5598033 YP_001450170.1 CDS SGO_0874 NC_009785.1 921583 922041 D putative lipoprotein 921583..922041 Streptococcus gordonii str. Challis substr. CH1 5598900 YP_001450171.1 CDS SGO_0875 NC_009785.1 922309 923034 R hypothetical protein complement(922309..923034) Streptococcus gordonii str. Challis substr. CH1 5597921 YP_001450172.1 CDS SGO_0876 NC_009785.1 923144 923752 D hypothetical protein 923144..923752 Streptococcus gordonii str. Challis substr. CH1 5598347 YP_001450173.1 CDS SGO_0877 NC_009785.1 923821 924882 D identified by match to protein family HMM PF02687; permease domain protein 923821..924882 Streptococcus gordonii str. Challis substr. CH1 5599053 YP_001450174.1 CDS SGO_0878 NC_009785.1 924883 925548 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 924883..925548 Streptococcus gordonii str. Challis substr. CH1 5599777 YP_001450175.1 CDS SGO_0879 NC_009785.1 926008 926187 D hypothetical protein 926008..926187 Streptococcus gordonii str. Challis substr. CH1 5599041 YP_001450176.1 CDS SGO_0880 NC_009785.1 928289 928468 D hypothetical protein 928289..928468 Streptococcus gordonii str. Challis substr. CH1 5597949 YP_001450177.1 CDS SGO_0881 NC_009785.1 928362 928718 D hypothetical protein 928362..928718 Streptococcus gordonii str. Challis substr. CH1 5598096 YP_001450178.1 CDS rggC NC_009785.1 928723 929586 D identified by match to protein family HMM TIGR01716; putative transcriptional regulator RggC 928723..929586 Streptococcus gordonii str. Challis substr. CH1 5599604 YP_001450179.1 CDS SGO_0883 NC_009785.1 929665 930846 D identified by match to protein family HMM PF07690; transporter SP1116 929665..930846 Streptococcus gordonii str. Challis substr. CH1 5598839 YP_001450180.1 CDS SGO_0884 NC_009785.1 930865 931122 R hypothetical protein complement(930865..931122) Streptococcus gordonii str. Challis substr. CH1 5598185 YP_001450181.1 CDS SGO_0885 NC_009785.1 931141 931926 R identified by match to protein family HMM PF07685; cobyric acid synthase complement(931141..931926) Streptococcus gordonii str. Challis substr. CH1 5598443 YP_001450182.1 CDS SGO_0886 NC_009785.1 931926 933269 R identified by match to protein family HMM PF08245; match to protein family HMM PF08353; Mur ligase family protein complement(931926..933269) Streptococcus gordonii str. Challis substr. CH1 5598754 YP_001450183.1 CDS SGO_0887 NC_009785.1 933436 934218 D identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 933436..934218 Streptococcus gordonii str. Challis substr. CH1 5598719 YP_001450184.1 CDS SGO_0888 NC_009785.1 934215 934961 D identified by match to protein family HMM PF07949; hypothetical protein 934215..934961 Streptococcus gordonii str. Challis substr. CH1 5599286 YP_001450185.1 CDS glmM NC_009785.1 934998 936350 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 934998..936350 Streptococcus gordonii str. Challis substr. CH1 5599650 YP_001450186.1 CDS SGO_0890 NC_009785.1 936521 938413 D identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167; LPXTG cell wall surface protein 936521..938413 Streptococcus gordonii str. Challis substr. CH1 5598876 YP_001450187.1 CDS SGO_0891 NC_009785.1 938444 938551 R hypothetical protein complement(938444..938551) Streptococcus gordonii str. Challis substr. CH1 5599174 YP_001450188.1 CDS SGO_0892 NC_009785.1 938590 938721 D hypothetical protein 938590..938721 Streptococcus gordonii str. Challis substr. CH1 5599717 YP_001450189.1 CDS obgE NC_009785.1 938797 940107 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 938797..940107 Streptococcus gordonii str. Challis substr. CH1 5599197 YP_001450190.1 CDS SGO_0894 NC_009785.1 940119 940274 D hypothetical protein 940119..940274 Streptococcus gordonii str. Challis substr. CH1 5598213 YP_001450191.1 CDS SGO_0895 NC_009785.1 940401 940973 D identified by match to protein family HMM PF04229; hypothetical protein 940401..940973 Streptococcus gordonii str. Challis substr. CH1 5598363 YP_001450192.1 CDS SGO_0896 NC_009785.1 940979 941593 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 940979..941593 Streptococcus gordonii str. Challis substr. CH1 5599387 YP_001450193.1 CDS SGO_0897 NC_009785.1 941606 942226 D identified by match to protein family HMM PF03575; peptidase E 941606..942226 Streptococcus gordonii str. Challis substr. CH1 5599593 YP_001450194.1 CDS SGO_0898 NC_009785.1 942341 942751 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator putative 942341..942751 Streptococcus gordonii str. Challis substr. CH1 5597939 YP_001450195.1 CDS SGO_0899 NC_009785.1 942762 943862 D identified by match to protein family HMM PF00561; putative hydrolase or acyltransferase 942762..943862 Streptococcus gordonii str. Challis substr. CH1 5598307 YP_001450196.1 CDS SGO_0900 NC_009785.1 943880 944500 D identified by match to protein family HMM PF01590; hypothetical protein 943880..944500 Streptococcus gordonii str. Challis substr. CH1 5598172 YP_001450197.1 CDS SGO_0901 NC_009785.1 944500 946170 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 944500..946170 Streptococcus gordonii str. Challis substr. CH1 5598637 YP_001450198.1 CDS SGO_0902 NC_009785.1 946209 946394 D hypothetical protein 946209..946394 Streptococcus gordonii str. Challis substr. CH1 5598433 YP_001450199.1 CDS birA NC_009785.1 946453 947388 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(946453..947388) Streptococcus gordonii str. Challis substr. CH1 5599112 YP_001450200.1 CDS purR NC_009785.1 947405 948406 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; galactose operon repressor GalR complement(947405..948406) Streptococcus gordonii str. Challis substr. CH1 5598127 YP_001450201.1 CDS SGO_0905 NC_009785.1 948572 949228 D putative lipoprotein 948572..949228 Streptococcus gordonii str. Challis substr. CH1 5597799 YP_001450202.1 CDS leuA NC_009785.1 949680 951248 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 949680..951248 Streptococcus gordonii str. Challis substr. CH1 5599101 YP_001450203.1 CDS leuB NC_009785.1 951261 952298 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 951261..952298 Streptococcus gordonii str. Challis substr. CH1 5599414 YP_001450204.1 CDS SGO_0908 NC_009785.1 952295 952561 D identified by match to protein family HMM PF06961; membrane protein 952295..952561 Streptococcus gordonii str. Challis substr. CH1 5598442 YP_001450205.1 CDS leuC NC_009785.1 952563 953945 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 952563..953945 Streptococcus gordonii str. Challis substr. CH1 5599617 YP_001450206.1 CDS leuD NC_009785.1 953955 954545 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 953955..954545 Streptococcus gordonii str. Challis substr. CH1 5599203 YP_001450207.1 CDS SGO_0911 NC_009785.1 954645 955424 D hypothetical protein 954645..955424 Streptococcus gordonii str. Challis substr. CH1 5598456 YP_001450208.1 CDS SGO_0912 NC_009785.1 955668 956105 D identified by match to protein family HMM PF01047; SlyA-like protein 955668..956105 Streptococcus gordonii str. Challis substr. CH1 5598892 YP_001450209.1 CDS proV NC_009785.1 956887 957615 D identified by match to protein family HMM PF00005; ABC-type proline/glycine betaine transporter 956887..957615 Streptococcus gordonii str. Challis substr. CH1 5598092 YP_001450210.1 CDS proWX NC_009785.1 957608 959128 D identified by match to protein family HMM PF00528; match to protein family HMM PF04069; ABC transporter permease 957608..959128 Streptococcus gordonii str. Challis substr. CH1 5598310 YP_001450211.1 CDS SGO_0917 NC_009785.1 959466 960068 D hypothetical protein 959466..960068 Streptococcus gordonii str. Challis substr. CH1 5597954 YP_001450212.1 CDS SGO_0918 NC_009785.1 960125 960859 D identified by match to protein family HMM PF02361; cobalt ABC transporter permease 960125..960859 Streptococcus gordonii str. Challis substr. CH1 5599171 YP_001450213.1 CDS SGO_0919 NC_009785.1 960835 961671 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 960835..961671 Streptococcus gordonii str. Challis substr. CH1 5599393 YP_001450214.1 CDS SGO_0920 NC_009785.1 961658 962458 D identified by match to protein family HMM PF00005; cobalt transport ATP-binding protein 961658..962458 Streptococcus gordonii str. Challis substr. CH1 5599042 YP_001450215.1 CDS SGO_0921 NC_009785.1 962540 962680 R hypothetical protein complement(962540..962680) Streptococcus gordonii str. Challis substr. CH1 5598755 YP_001450216.1 CDS SGO_0922 NC_009785.1 962592 962702 R hypothetical protein complement(962592..962702) Streptococcus gordonii str. Challis substr. CH1 5597875 YP_001450217.1 CDS SGO_0923 NC_009785.1 962683 962856 R near IS element with potential frameshift; HsdD protein complement(962683..962856) Streptococcus gordonii str. Challis substr. CH1 5598547 YP_001450218.1 CDS SGO_0924 NC_009785.1 962832 963059 R HsdD protein complement(962832..963059) Streptococcus gordonii str. Challis substr. CH1 5597979 YP_001450219.1 CDS SGO_0925 NC_009785.1 963072 963329 R plasmid replication protein-like protein complement(963072..963329) Streptococcus gordonii str. Challis substr. CH1 5599673 YP_001450220.1 CDS SGO_0926 NC_009785.1 963322 963720 R identified by match to protein family HMM PF06430; putative DNA replicative RepB-like protein complement(963322..963720) Streptococcus gordonii str. Challis substr. CH1 5599452 YP_001450221.1 CDS SGO_0929 NC_009785.1 965049 965621 R identified by match to protein family HMM PF00440; transcriptional regulator complement(965049..965621) Streptococcus gordonii str. Challis substr. CH1 5599086 YP_001450222.1 CDS SGO_0930 NC_009785.1 965643 966533 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux system protein 965643..966533 Streptococcus gordonii str. Challis substr. CH1 5598665 YP_001450223.1 CDS galK NC_009785.1 967706 968884 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 967706..968884 Streptococcus gordonii str. Challis substr. CH1 5597849 YP_001450224.1 CDS galT NC_009785.1 969104 970585 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 969104..970585 Streptococcus gordonii str. Challis substr. CH1 5598037 YP_001450225.1 CDS galE-2 NC_009785.1 970631 971632 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 970631..971632 Streptococcus gordonii str. Challis substr. CH1 5598036 YP_001450226.1 CDS SGO_0935 NC_009785.1 971819 972409 D identified by match to protein family HMM PF01864; CDP-diglyceride synthetase 971819..972409 Streptococcus gordonii str. Challis substr. CH1 5599463 YP_001450227.1 CDS SGO_0936 NC_009785.1 972424 974919 D identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 972424..974919 Streptococcus gordonii str. Challis substr. CH1 5598542 YP_001450228.1 CDS SGO_0937 NC_009785.1 974906 975538 D identified by match to protein family HMM PF01066; phosphatidylserine synthase 974906..975538 Streptococcus gordonii str. Challis substr. CH1 5597992 YP_001450229.1 CDS SGO_0938 NC_009785.1 975531 976403 D identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase 975531..976403 Streptococcus gordonii str. Challis substr. CH1 5598533 YP_001450230.1 CDS ubiA NC_009785.1 976565 977287 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 976565..977287 Streptococcus gordonii str. Challis substr. CH1 5599574 YP_001450231.1 CDS ppsA NC_009785.1 977287 979770 D identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 977287..979770 Streptococcus gordonii str. Challis substr. CH1 5598782 YP_001450232.1 CDS SGO_0941 NC_009785.1 979757 980830 D hypothetical protein 979757..980830 Streptococcus gordonii str. Challis substr. CH1 5597891 YP_001450233.1 CDS zmpC NC_009785.1 981033 988826 D identified by match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01168; zinc metalloproteinase C 981033..988826 Streptococcus gordonii str. Challis substr. CH1 5599830 YP_001450234.1 CDS SGO_0943 NC_009785.1 988955 989536 D hypothetical protein 988955..989536 Streptococcus gordonii str. Challis substr. CH1 5598218 YP_001450235.1 CDS SGO_0944 NC_009785.1 989529 990209 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 989529..990209 Streptococcus gordonii str. Challis substr. CH1 5597777 YP_001450236.1 CDS SGO_0945 NC_009785.1 990213 991358 D identified by match to protein family HMM PF02687; ABC transporter permease 990213..991358 Streptococcus gordonii str. Challis substr. CH1 5599330 YP_001450237.1 CDS SGO_0946 NC_009785.1 991446 992483 D identified by match to protein family HMM PF01546; match to protein family HMM PF05343; deblocking aminopeptidase 991446..992483 Streptococcus gordonii str. Challis substr. CH1 5598608 YP_001450238.1 CDS SGO_0947 NC_009785.1 992500 993432 D hydrolase 992500..993432 Streptococcus gordonii str. Challis substr. CH1 5597969 YP_001450239.1 CDS pgdA NC_009785.1 993598 994995 D identified by match to protein family HMM PF01522; peptidoglycan N-acetylglucosamine deacetylase A 993598..994995 Streptococcus gordonii str. Challis substr. CH1 5599579 YP_001450240.1 CDS deaD NC_009785.1 995089 996204 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(995089..996204) Streptococcus gordonii str. Challis substr. CH1 5598317 YP_001450241.1 CDS SGO_0950 NC_009785.1 996170 997150 R identified by match to protein family HMM PF01408; oxidoreductase complement(996170..997150) Streptococcus gordonii str. Challis substr. CH1 5599426 YP_001450242.1 CDS udk NC_009785.1 997253 997885 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 997253..997885 Streptococcus gordonii str. Challis substr. CH1 5598870 YP_001450243.1 CDS SGO_0952 NC_009785.1 997927 998598 D identified by match to protein family HMM PF06912; integral membrane protein 997927..998598 Streptococcus gordonii str. Challis substr. CH1 5597755 YP_001450244.1 CDS SGO_0953 NC_009785.1 998818 999198 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 998818..999198 Streptococcus gordonii str. Challis substr. CH1 5599131 YP_001450245.1 CDS SGO_0954 NC_009785.1 999223 1000113 D identified by match to protein family HMM PF03668; hypothetical protein 999223..1000113 Streptococcus gordonii str. Challis substr. CH1 5598758 YP_001450246.1 CDS SGO_0955 NC_009785.1 1000110 1001084 D identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; transporter 1000110..1001084 Streptococcus gordonii str. Challis substr. CH1 5599551 YP_001450247.1 CDS SGO_0956 NC_009785.1 1001081 1001992 D identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 1001081..1001992 Streptococcus gordonii str. Challis substr. CH1 5597871 YP_001450248.1 CDS SGO_0957 NC_009785.1 1002179 1002793 D hypothetical protein 1002179..1002793 Streptococcus gordonii str. Challis substr. CH1 5599721 YP_001450249.1 CDS SGO_0958 NC_009785.1 1002805 1003671 D hypothetical protein 1002805..1003671 Streptococcus gordonii str. Challis substr. CH1 5598382 YP_001450250.1 CDS SGO_0959 NC_009785.1 1003752 1004384 D identified by match to protein family HMM PF03932; copper homeostasis protein CutC 1003752..1004384 Streptococcus gordonii str. Challis substr. CH1 5599568 YP_001450251.1 CDS SGO_0960 NC_009785.1 1004429 1005100 D identified by match to protein family HMM PF04237; hypothetical protein 1004429..1005100 Streptococcus gordonii str. Challis substr. CH1 5599085 YP_001450252.1 CDS SGO_0961 NC_009785.1 1005191 1006930 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 1005191..1006930 Streptococcus gordonii str. Challis substr. CH1 5598946 YP_001450253.1 CDS SGO_0962 NC_009785.1 1006932 1008674 D ABC transporter; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein 1006932..1008674 Streptococcus gordonii str. Challis substr. CH1 5599734 YP_001450254.1 CDS SGO_0963 NC_009785.1 1008686 1010092 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1008686..1010092) Streptococcus gordonii str. Challis substr. CH1 5598790 YP_001450255.1 CDS pdxK NC_009785.1 1010070 1010930 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1010070..1010930 Streptococcus gordonii str. Challis substr. CH1 5599825 YP_001450256.1 CDS SGO_0965 NC_009785.1 1010923 1011453 D integral membrane protein 1010923..1011453 Streptococcus gordonii str. Challis substr. CH1 5598229 YP_001450257.1 CDS hsa NC_009785.1 1011694 1018230 D identified by similarity to GB:BAA97453.1; match to protein family HMM PF00746; match to protein family HMM TIGR01167; streptococcal hemagglutinin 1011694..1018230 Streptococcus gordonii str. Challis substr. CH1 5598110 YP_001450258.1 CDS SGO_0968 NC_009785.1 1019760 1020617 D identified by match to protein family HMM PF08759; glycosyl transferase family protein 1019760..1020617 Streptococcus gordonii str. Challis substr. CH1 5599808 YP_001450259.1 CDS nss NC_009785.1 1020634 1021638 D hypothetical protein 1020634..1021638 Streptococcus gordonii str. Challis substr. CH1 5597980 YP_001450260.1 CDS secY NC_009785.1 1021670 1022893 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1021670..1022893 Streptococcus gordonii str. Challis substr. CH1 5598663 YP_001450261.1 CDS asp1 NC_009785.1 1022902 1024482 D accessory secretory protein 1022902..1024482 Streptococcus gordonii str. Challis substr. CH1 5599274 YP_001450262.1 CDS asp2 NC_009785.1 1024472 1026001 D accessory sescretory protein 1024472..1026001 Streptococcus gordonii str. Challis substr. CH1 5598949 YP_001450263.1 CDS asp3 NC_009785.1 1026037 1026477 D accessory secretory protein 1026037..1026477 Streptococcus gordonii str. Challis substr. CH1 5598917 YP_001450264.1 CDS gtaA NC_009785.1 1028864 1030384 D identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918; glycosyl transferase, group 1 SP1758 1028864..1030384 Streptococcus gordonii str. Challis substr. CH1 5598370 YP_001450265.1 CDS SGO_0976 NC_009785.1 1030368 1031720 D identified by match to protein family HMM TIGR02919; hypothetical protein 1030368..1031720 Streptococcus gordonii str. Challis substr. CH1 5599701 YP_001450266.1 CDS SGO_0977 NC_009785.1 1031713 1031895 D hypothetical protein 1031713..1031895 Streptococcus gordonii str. Challis substr. CH1 5599106 YP_001450267.1 CDS SGO_0978 NC_009785.1 1031897 1032118 D hypothetical protein 1031897..1032118 Streptococcus gordonii str. Challis substr. CH1 5599508 YP_001450268.1 CDS SGO_0979 NC_009785.1 1032189 1033034 R identified by match to protein family HMM PF02645; degV family protein complement(1032189..1033034) Streptococcus gordonii str. Challis substr. CH1 5599183 YP_001450269.1 CDS SGO_0980 NC_009785.1 1033161 1033730 D identified by match to protein family HMM PF00440; transcriptional regulator 1033161..1033730 Streptococcus gordonii str. Challis substr. CH1 5597864 YP_001450270.1 CDS SGO_0981 NC_009785.1 1033746 1034213 D identified by match to protein family HMM PF00383; ComE operon family protein 1033746..1034213 Streptococcus gordonii str. Challis substr. CH1 5599653 YP_001450271.1 CDS SGO_0982 NC_009785.1 1034289 1035143 R ABC transporter; identified by match to protein family HMM PF00497; amino acid transport protein complement(1034289..1035143) Streptococcus gordonii str. Challis substr. CH1 5599315 YP_001450272.1 CDS SGO_0983 NC_009785.1 1035155 1035913 R ABC transporterATP-binding protein; identified by match to protein family HMM PF00005; amino acid transport protein complement(1035155..1035913) Streptococcus gordonii str. Challis substr. CH1 5598653 YP_001450273.1 CDS SGO_0984 NC_009785.1 1035915 1036592 R ABC transporter; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid permease complement(1035915..1036592) Streptococcus gordonii str. Challis substr. CH1 5597747 YP_001450274.1 CDS SGO_0985 NC_009785.1 1036552 1037232 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid permease complement(1036552..1037232) Streptococcus gordonii str. Challis substr. CH1 5599072 YP_001450275.1 CDS SGO_0986 NC_009785.1 1037567 1038055 D hypothetical protein 1037567..1038055 Streptococcus gordonii str. Challis substr. CH1 5598034 YP_001450276.1 CDS metK NC_009785.1 1038378 1039568 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1038378..1039568 Streptococcus gordonii str. Challis substr. CH1 5599340 YP_001450277.1 CDS SGO_0988 NC_009785.1 1039628 1040554 D identified by match to protein family HMM PF08279; putative transcriptional regulator 1039628..1040554 Streptococcus gordonii str. Challis substr. CH1 5598272 YP_001450278.1 CDS SGO_0989 NC_009785.1 1040638 1041003 D hypothetical protein 1040638..1041003 Streptococcus gordonii str. Challis substr. CH1 5598683 YP_001450279.1 CDS SGO_0990 NC_009785.1 1041232 1042479 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 1041232..1042479 Streptococcus gordonii str. Challis substr. CH1 5599739 YP_001450280.1 CDS SGO_0991 NC_009785.1 1042575 1042745 R hypothetical protein complement(1042575..1042745) Streptococcus gordonii str. Challis substr. CH1 5599439 YP_001450281.1 CDS miaA NC_009785.1 1042827 1043711 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1042827..1043711 Streptococcus gordonii str. Challis substr. CH1 5598612 YP_001450282.1 CDS SGO_0993 NC_009785.1 1043743 1044981 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156; GTP-binding protein HflX 1043743..1044981 Streptococcus gordonii str. Challis substr. CH1 5598525 YP_001450283.1 CDS SGO_0994 NC_009785.1 1044974 1045597 D hypothetical protein 1044974..1045597 Streptococcus gordonii str. Challis substr. CH1 5598814 YP_001450284.1 CDS SGO_0995 NC_009785.1 1045608 1046537 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1045608..1046537 Streptococcus gordonii str. Challis substr. CH1 5597896 YP_001450285.1 CDS SGO_0996 NC_009785.1 1046642 1047397 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase/reductase family oxidoreductase 1046642..1047397 Streptococcus gordonii str. Challis substr. CH1 5597789 YP_001450286.1 CDS SGO_0997 NC_009785.1 1047437 1048141 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 1047437..1048141 Streptococcus gordonii str. Challis substr. CH1 5598493 YP_001450287.1 CDS SGO_0998 NC_009785.1 1048197 1049249 D hypothetical protein 1048197..1049249 Streptococcus gordonii str. Challis substr. CH1 5598367 YP_001450288.1 CDS SGO_0999 NC_009785.1 1049286 1049876 D identified by match to protein family HMM PF01966; hydrolase 1049286..1049876 Streptococcus gordonii str. Challis substr. CH1 5598193 YP_001450289.1 CDS recJ NC_009785.1 1049907 1052201 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1049907..1052201 Streptococcus gordonii str. Challis substr. CH1 5598364 YP_001450290.1 CDS apt NC_009785.1 1052287 1052799 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1052287..1052799 Streptococcus gordonii str. Challis substr. CH1 5598020 YP_001450291.1 CDS metA NC_009785.1 1052899 1053840 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1052899..1053840 Streptococcus gordonii str. Challis substr. CH1 5598956 YP_001450292.1 CDS SGO_1003 NC_009785.1 1053849 1054529 D identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 1053849..1054529 Streptococcus gordonii str. Challis substr. CH1 5598162 YP_001450293.1 CDS SGO_1004 NC_009785.1 1054597 1055385 D YghU; B2989; one of eight putative glutathione transferases from E. coli; putative glutathione S-transferase YghU 1054597..1055385 Streptococcus gordonii str. Challis substr. CH1 5598800 YP_001450294.1 CDS SGO_1005 NC_009785.1 1055527 1056216 D identified by match to protein family HMM PF04816; bcl-2 family protein 1055527..1056216 Streptococcus gordonii str. Challis substr. CH1 5598007 YP_001450295.1 CDS SGO_1006 NC_009785.1 1056203 1057000 D identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1056203..1057000 Streptococcus gordonii str. Challis substr. CH1 5598461 YP_001450296.1 CDS SGO_1007 NC_009785.1 1057012 1058106 D identified by match to protein family HMM PF01266; oxidoreductase, DadA family protein SP1608 1057012..1058106 Streptococcus gordonii str. Challis substr. CH1 5599374 YP_001450297.1 CDS SGO_1008 NC_009785.1 1058108 1058578 D identified by match to protein family HMM PF00293; phosphohydrolase 1058108..1058578 Streptococcus gordonii str. Challis substr. CH1 5599328 YP_001450298.1 CDS rfbA-1 NC_009785.1 1058910 1059779 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 1058910..1059779 Streptococcus gordonii str. Challis substr. CH1 5598725 YP_001450299.1 CDS rmlC NC_009785.1 1059784 1060377 D identified by match to protein family HMM PF00908; dTDP-4-keto-6-deoxyglucose-3,5-epimerase 1059784..1060377 Streptococcus gordonii str. Challis substr. CH1 5599632 YP_001450300.1 CDS rfbB-1 NC_009785.1 1060546 1061592 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 1060546..1061592 Streptococcus gordonii str. Challis substr. CH1 5598329 YP_001450301.1 CDS galE-1 NC_009785.1 1061633 1062652 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1061633..1062652 Streptococcus gordonii str. Challis substr. CH1 5599652 YP_001450302.1 CDS SGO_1013 NC_009785.1 1062936 1063646 D identified by match to protein family HMM PF00535; cell wall biosynthesis glycosyltransferase 1062936..1063646 Streptococcus gordonii str. Challis substr. CH1 5598910 YP_001450303.1 CDS SGO_1014 NC_009785.1 1063615 1063983 D hypothetical protein 1063615..1063983 Streptococcus gordonii str. Challis substr. CH1 5599400 YP_001450304.1 CDS SGO_1015 NC_009785.1 1063985 1065241 D hypothetical protein 1063985..1065241 Streptococcus gordonii str. Challis substr. CH1 5597757 YP_001450305.1 CDS SGO_1016 NC_009785.1 1065241 1066023 D identified by match to protein family HMM PF00535; putative glycosyltransferase 1065241..1066023 Streptococcus gordonii str. Challis substr. CH1 5599657 YP_001450306.1 CDS SGO_1017 NC_009785.1 1066033 1067508 D hypothetical protein 1066033..1067508 Streptococcus gordonii str. Challis substr. CH1 5599671 YP_001450307.1 CDS SGO_1018 NC_009785.1 1067675 1069423 D hypothetical protein 1067675..1069423 Streptococcus gordonii str. Challis substr. CH1 5598753 YP_001450308.1 CDS SGO_1019 NC_009785.1 1069480 1070406 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1069480..1070406 Streptococcus gordonii str. Challis substr. CH1 5599187 YP_001450309.1 CDS rfbD NC_009785.1 1070475 1071326 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 1070475..1071326 Streptococcus gordonii str. Challis substr. CH1 5599190 YP_001450310.1 CDS rgpA NC_009785.1 1071519 1072667 D identified by match to protein family HMM PF09314; rhamnosyltransferase 1071519..1072667 Streptococcus gordonii str. Challis substr. CH1 5598641 YP_001450311.1 CDS SGO_1022 NC_009785.1 1072664 1073605 D identified by match to protein family HMM PF00535; rhamnosyltransferase 1072664..1073605 Streptococcus gordonii str. Challis substr. CH1 5598833 YP_001450312.1 CDS SGO_1023 NC_009785.1 1073605 1074411 D identified by match to protein family HMM PF01061; putative polysaccharide permease 1073605..1074411 Streptococcus gordonii str. Challis substr. CH1 5598699 YP_001450313.1 CDS SGO_1024 NC_009785.1 1074411 1075634 D identified by match to protein family HMM PF00005; putative polysaccharide ABC transporter 1074411..1075634 Streptococcus gordonii str. Challis substr. CH1 5598636 YP_001450314.1 CDS rgp NC_009785.1 1075647 1076996 D identified by match to protein family HMM PF00535; glycosyltransferase 1075647..1076996 Streptococcus gordonii str. Challis substr. CH1 5599377 YP_001450315.1 CDS SGO_1026 NC_009785.1 1076998 1078746 D identified by match to protein family HMM PF05045; rhamnosyltransferase 1076998..1078746 Streptococcus gordonii str. Challis substr. CH1 5599695 YP_001450316.1 CDS SGO_1027 NC_009785.1 1078743 1081211 D identified by match to protein family HMM PF00884; hypothetical protein 1078743..1081211 Streptococcus gordonii str. Challis substr. CH1 5599363 YP_001450317.1 CDS SGO_1028 NC_009785.1 1081361 1081849 D hypothetical protein 1081361..1081849 Streptococcus gordonii str. Challis substr. CH1 5598025 YP_001450318.1 CDS SGO_1029 NC_009785.1 1081846 1082043 R ferredoxin complement(1081846..1082043) Streptococcus gordonii str. Challis substr. CH1 5599685 YP_001450319.1 CDS SGO_1030 NC_009785.1 1082089 1082538 D hypothetical protein 1082089..1082538 Streptococcus gordonii str. Challis substr. CH1 5598021 YP_001450320.1 CDS cmk NC_009785.1 1082548 1083225 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1082548..1083225 Streptococcus gordonii str. Challis substr. CH1 5598595 YP_001450321.1 CDS infC NC_009785.1 1083497 1084027 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1083497..1084027 Streptococcus gordonii str. Challis substr. CH1 5599409 YP_001450322.1 CDS rpmI NC_009785.1 1084062 1084262 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1084062..1084262 Streptococcus gordonii str. Challis substr. CH1 5598864 YP_001450323.1 CDS rplT NC_009785.1 1084313 1084672 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1084313..1084672 Streptococcus gordonii str. Challis substr. CH1 5598902 YP_001450324.1 CDS gloA NC_009785.1 1084806 1085186 D identified by match to protein family HMM PF00903; lactoylglutathione lyase 1084806..1085186 Streptococcus gordonii str. Challis substr. CH1 5597991 YP_001450325.1 CDS SGO_1036 NC_009785.1 1085256 1085996 R identified by match to protein family HMM PF00005; amino acid transport protein complement(1085256..1085996) Streptococcus gordonii str. Challis substr. CH1 5599507 YP_001450326.1 CDS SGO_1037 NC_009785.1 1085996 1087453 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease and substrate binding protein complement(1085996..1087453) Streptococcus gordonii str. Challis substr. CH1 5598435 YP_001450327.1 CDS uvrB NC_009785.1 1087834 1089822 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1087834..1089822 Streptococcus gordonii str. Challis substr. CH1 5599291 YP_001450328.1 CDS SGO_1039 NC_009785.1 1089930 1090706 D hypothetical protein 1089930..1090706 Streptococcus gordonii str. Challis substr. CH1 5599587 YP_001450329.1 CDS SGO_1040 NC_009785.1 1090738 1091235 D identified by match to protein family HMM PF00583; acetyltransferase 1090738..1091235 Streptococcus gordonii str. Challis substr. CH1 5598727 YP_001450330.1 CDS SGO_1041 NC_009785.1 1091271 1091816 D identified by match to protein family HMM PF08002; hypothetical protein 1091271..1091816 Streptococcus gordonii str. Challis substr. CH1 5598198 YP_001450331.1 CDS SGO_1042 NC_009785.1 1091791 1091916 R hypothetical protein complement(1091791..1091916) Streptococcus gordonii str. Challis substr. CH1 5599076 YP_001450332.1 CDS SGO_1043 NC_009785.1 1092344 1092787 D hypothetical protein 1092344..1092787 Streptococcus gordonii str. Challis substr. CH1 5598737 YP_001450333.1 CDS SGO_1044 NC_009785.1 1092811 1093278 D identified by match to protein family HMM PF00293; MutT/nudix family protein 1092811..1093278 Streptococcus gordonii str. Challis substr. CH1 5599254 YP_001450334.1 CDS SGO_1045 NC_009785.1 1093319 1093831 R identified by match to protein family HMM PF02829; match to protein family HMM PF08279; transcriptional regulator complement(1093319..1093831) Streptococcus gordonii str. Challis substr. CH1 5598361 YP_001450335.1 CDS SGO_1046 NC_009785.1 1093870 1094397 R hypothetical protein complement(1093870..1094397) Streptococcus gordonii str. Challis substr. CH1 5598483 YP_001450336.1 CDS SGO_1047 NC_009785.1 1094558 1095832 D hypothetical protein 1094558..1095832 Streptococcus gordonii str. Challis substr. CH1 5598118 YP_001450337.1 CDS SGO_1048 NC_009785.1 1095844 1096650 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1095844..1096650 Streptococcus gordonii str. Challis substr. CH1 5598211 YP_001450338.1 CDS truB NC_009785.1 1096654 1097532 D tRNA pseudouridine 55synthase; Psi55 synthase; Pseudouridine synthase; Uracilhydrolyase; catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1096654..1097532 Streptococcus gordonii str. Challis substr. CH1 5598966 YP_001450339.1 CDS ribF NC_009785.1 1097555 1098472 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1097555..1098472 Streptococcus gordonii str. Challis substr. CH1 5599079 YP_001450340.1 CDS spxA NC_009785.1 1098562 1098963 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 1098562..1098963 Streptococcus gordonii str. Challis substr. CH1 5597931 YP_001450341.1 CDS SGO_1052 NC_009785.1 1098967 1099245 D identified by match to protein family HMM PF05256; hypothetical protein 1098967..1099245 Streptococcus gordonii str. Challis substr. CH1 5598630 YP_001450342.1 CDS app NC_009785.1 1099235 1100008 D identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1099235..1100008 Streptococcus gordonii str. Challis substr. CH1 5597740 YP_001450343.1 CDS SGO_1054 NC_009785.1 1100009 1101313 D identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein 1100009..1101313 Streptococcus gordonii str. Challis substr. CH1 5598982 YP_001450344.1 CDS SGO_1055 NC_009785.1 1101410 1102291 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate transport protein 1101410..1102291 Streptococcus gordonii str. Challis substr. CH1 5599380 YP_001450345.1 CDS pstC NC_009785.1 1102288 1103205 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate transport protein PstC 1102288..1103205 Streptococcus gordonii str. Challis substr. CH1 5598715 YP_001450346.1 CDS pstA NC_009785.1 1103195 1104079 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate permease PstA 1103195..1104079 Streptococcus gordonii str. Challis substr. CH1 5599668 YP_001450347.1 CDS pstB2 NC_009785.1 1104090 1104893 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1104090..1104893 Streptococcus gordonii str. Challis substr. CH1 5599290 YP_001450348.1 CDS pstB1 NC_009785.1 1104944 1105702 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1104944..1105702 Streptococcus gordonii str. Challis substr. CH1 5599272 YP_001450349.1 CDS SGO_1060 NC_009785.1 1105724 1106377 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein 1105724..1106377 Streptococcus gordonii str. Challis substr. CH1 5597815 YP_001450350.1 CDS SGO_1061 NC_009785.1 1106530 1107150 D hypothetical protein 1106530..1107150 Streptococcus gordonii str. Challis substr. CH1 5598392 YP_001450351.1 CDS SGO_1062 NC_009785.1 1107206 1107826 D hypothetical protein 1107206..1107826 Streptococcus gordonii str. Challis substr. CH1 5599544 YP_001450352.1 CDS SGO_1063 NC_009785.1 1107863 1108471 D hypothetical protein 1107863..1108471 Streptococcus gordonii str. Challis substr. CH1 5598385 YP_001450353.1 CDS SGO_1064 NC_009785.1 1108701 1109270 D hypothetical protein 1108701..1109270 Streptococcus gordonii str. Challis substr. CH1 5599039 YP_001450354.1 CDS SGO_1065 NC_009785.1 1109463 1110026 D hypothetical protein 1109463..1110026 Streptococcus gordonii str. Challis substr. CH1 5599077 YP_001450355.1 CDS SGO_1066 NC_009785.1 1110017 1111339 D hypothetical protein 1110017..1111339 Streptococcus gordonii str. Challis substr. CH1 5598274 YP_001450356.1 CDS SGO_1067 NC_009785.1 1111350 1111646 D hypothetical protein 1111350..1111646 Streptococcus gordonii str. Challis substr. CH1 5599569 YP_001450357.1 CDS SGO_1068 NC_009785.1 1111655 1111981 D hypothetical protein 1111655..1111981 Streptococcus gordonii str. Challis substr. CH1 5598066 YP_001450358.1 CDS SGO_1069 NC_009785.1 1112112 1114655 D identified by match to protein family HMM PF01433; membrane alanyl aminopeptidase 1112112..1114655 Streptococcus gordonii str. Challis substr. CH1 5599219 YP_001450359.1 CDS bioY-2 NC_009785.1 1114712 1115254 R identified by match to protein family HMM PF02632; biotin synthase complement(1114712..1115254) Streptococcus gordonii str. Challis substr. CH1 5599191 YP_001450360.1 CDS SGO_1071 NC_009785.1 1115466 1115921 D hypothetical protein 1115466..1115921 Streptococcus gordonii str. Challis substr. CH1 5599648 YP_001450361.1 CDS ciaR NC_009785.1 1116052 1116726 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein CiaR 1116052..1116726 Streptococcus gordonii str. Challis substr. CH1 5599368 YP_001450362.1 CDS SGO_1073 NC_009785.1 1116716 1118116 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein CiaH 1116716..1118116 Streptococcus gordonii str. Challis substr. CH1 5599591 YP_001450363.1 CDS SGO_1074 NC_009785.1 1118118 1119044 D identified by match to protein family HMM PF02558; hypothetical protein 1118118..1119044 Streptococcus gordonii str. Challis substr. CH1 5598986 YP_001450364.1 CDS SGO_1075 NC_009785.1 1119068 1120519 R converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase complement(1119068..1120519) Streptococcus gordonii str. Challis substr. CH1 5597937 YP_001450365.1 CDS rpsT NC_009785.1 1120746 1120988 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1120746..1120988) Streptococcus gordonii str. Challis substr. CH1 5598858 YP_001450366.1 CDS coaA NC_009785.1 1121091 1122011 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1121091..1122011) Streptococcus gordonii str. Challis substr. CH1 5599589 YP_001450367.1 CDS SGO_1078 NC_009785.1 1122116 1122709 D MTS; identified by match to protein family HMM PF05175; Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyl-transferase C as well as other methyltransferases; pfam05175; methyltransferase domain-containing protein 1122116..1122709 Streptococcus gordonii str. Challis substr. CH1 5598881 YP_001450368.1 CDS pdp NC_009785.1 1122706 1123983 D Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 1122706..1123983 Streptococcus gordonii str. Challis substr. CH1 5598041 YP_001450369.1 CDS deoC NC_009785.1 1124001 1124663 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1124001..1124663 Streptococcus gordonii str. Challis substr. CH1 5598813 YP_001450370.1 CDS cdd NC_009785.1 1124650 1125039 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1124650..1125039 Streptococcus gordonii str. Challis substr. CH1 5598065 YP_001450371.1 CDS SGO_1082 NC_009785.1 1125110 1126168 D identified by match to protein family HMM PF02608; lipoprotein 1125110..1126168 Streptococcus gordonii str. Challis substr. CH1 5599742 YP_001450372.1 CDS SGO_1083 NC_009785.1 1126308 1127843 D identified by match to protein family HMM PF00005; sugar transport protein SP0846 1126308..1127843 Streptococcus gordonii str. Challis substr. CH1 5597971 YP_001450373.1 CDS SGO_1084 NC_009785.1 1127836 1128894 D identified by match to protein family HMM PF02653; sugar ABC transporter permease 1127836..1128894 Streptococcus gordonii str. Challis substr. CH1 5598545 YP_001450374.1 CDS SGO_1085 NC_009785.1 1128896 1129852 D ABC transporter; identified by match to protein family HMM PF02653; permease 1128896..1129852 Streptococcus gordonii str. Challis substr. CH1 5599185 YP_001450375.1 CDS SGO_1086 NC_009785.1 1129947 1130810 D identified by match to protein family HMM PF00583; acetyltransferase 1129947..1130810 Streptococcus gordonii str. Challis substr. CH1 5598462 YP_001450376.1 CDS SGO_1087 NC_009785.1 1130887 1131783 D identified by match to protein family HMM PF03595; exfoliative toxin A 1130887..1131783 Streptococcus gordonii str. Challis substr. CH1 5599321 YP_001450377.1 CDS SGO_1088 NC_009785.1 1131878 1132786 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1131878..1132786 Streptococcus gordonii str. Challis substr. CH1 5599145 YP_001450378.1 CDS lspA NC_009785.1 1132783 1133250 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1132783..1133250 Streptococcus gordonii str. Challis substr. CH1 5599103 YP_001450379.1 CDS SGO_1090 NC_009785.1 1133234 1134124 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1133234..1134124 Streptococcus gordonii str. Challis substr. CH1 5599453 YP_001450380.1 CDS SGO_1091 NC_009785.1 1134220 1134750 D hypothetical protein 1134220..1134750 Streptococcus gordonii str. Challis substr. CH1 5598336 YP_001450381.1 CDS SGO_1092 NC_009785.1 1134763 1135023 D hypothetical protein 1134763..1135023 Streptococcus gordonii str. Challis substr. CH1 5598257 YP_001450382.1 CDS SGO_1093 NC_009785.1 1135149 1135871 D hypothetical protein 1135149..1135871 Streptococcus gordonii str. Challis substr. CH1 5598739 YP_001450383.1 CDS SGO_1094 NC_009785.1 1135873 1136595 D hypothetical protein 1135873..1136595 Streptococcus gordonii str. Challis substr. CH1 5598796 YP_001450384.1 CDS SGO_1095 NC_009785.1 1136623 1137156 D hypothetical protein 1136623..1137156 Streptococcus gordonii str. Challis substr. CH1 5597860 YP_001450385.1 CDS butA NC_009785.1 1137405 1138169 D identified by match to protein family HMM PF00106; match to protein family HMM PF03446; match to protein family HMM PF08659; match to protein family HMM TIGR02415; acetoin reductase 1137405..1138169 Streptococcus gordonii str. Challis substr. CH1 5598557 YP_001450386.1 CDS proB NC_009785.1 1138414 1139523 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1138414..1139523 Streptococcus gordonii str. Challis substr. CH1 5599794 YP_001450387.1 CDS proA NC_009785.1 1139545 1140807 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1139545..1140807 Streptococcus gordonii str. Challis substr. CH1 5599026 YP_001450388.1 CDS proC NC_009785.1 1140810 1141616 D identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1140810..1141616 Streptococcus gordonii str. Challis substr. CH1 5598751 YP_001450389.1 CDS phnA NC_009785.1 1141683 1142021 D identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA 1141683..1142021 Streptococcus gordonii str. Challis substr. CH1 5598343 YP_001450390.1 CDS SGO_1101 NC_009785.1 1142041 1142661 D hypothetical protein 1142041..1142661 Streptococcus gordonii str. Challis substr. CH1 5597861 YP_001450391.1 CDS SGO_1102 NC_009785.1 1142924 1143115 D identified by similarity to SP:P39765; PyrR bifunctional protein 1142924..1143115 Streptococcus gordonii str. Challis substr. CH1 5599002 YP_001450392.1 CDS carA NC_009785.1 1143255 1144331 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1143255..1144331 Streptococcus gordonii str. Challis substr. CH1 5599654 YP_001450393.1 CDS carB NC_009785.1 1144355 1147534 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1144355..1147534 Streptococcus gordonii str. Challis substr. CH1 5598282 YP_001450394.1 CDS SGO_1105 NC_009785.1 1147682 1147972 D hypothetical protein 1147682..1147972 Streptococcus gordonii str. Challis substr. CH1 5598464 YP_001450395.1 CDS SGO_1106 NC_009785.1 1148039 1148185 D hypothetical protein 1148039..1148185 Streptococcus gordonii str. Challis substr. CH1 5598366 YP_001450396.1 CDS SGO_1107 NC_009785.1 1148372 1148893 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1148372..1148893 Streptococcus gordonii str. Challis substr. CH1 5599033 YP_001450397.1 CDS SGO_1108 NC_009785.1 1148902 1150185 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1148902..1150185 Streptococcus gordonii str. Challis substr. CH1 5598269 YP_001450398.1 CDS pyrB NC_009785.1 1150289 1151209 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1150289..1151209 Streptococcus gordonii str. Challis substr. CH1 5597902 YP_001450399.1 CDS SGO_1110 NC_009785.1 1151424 1153679 D identified by match to protein family HMM PF00188; surface antigen SCP-like domain-containing protein 1151424..1153679 Streptococcus gordonii str. Challis substr. CH1 5599756 YP_001450400.1 CDS fruR NC_009785.1 1153818 1154561 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; phosphotransferase system repressor 1153818..1154561 Streptococcus gordonii str. Challis substr. CH1 5598795 YP_001450401.1 CDS fruB NC_009785.1 1154558 1155469 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 1-phosphofructokinase 1154558..1155469 Streptococcus gordonii str. Challis substr. CH1 5599499 YP_001450402.1 CDS fruA NC_009785.1 1155466 1157427 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system fructose specific transporter subunit IIABC 1155466..1157427 Streptococcus gordonii str. Challis substr. CH1 5597944 YP_001450403.1 CDS SGO_1114 NC_009785.1 1157579 1157953 D identified by match to protein family HMM PF06619; hypothetical protein 1157579..1157953 Streptococcus gordonii str. Challis substr. CH1 5598104 YP_001450404.1 CDS SGO_1115 NC_009785.1 1157954 1158805 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 1157954..1158805 Streptococcus gordonii str. Challis substr. CH1 5598482 YP_001450405.1 CDS dapB NC_009785.1 1158836 1159603 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1158836..1159603 Streptococcus gordonii str. Challis substr. CH1 5598704 YP_001450406.1 CDS pcnA NC_009785.1 1159600 1160799 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1159600..1160799 Streptococcus gordonii str. Challis substr. CH1 5598031 YP_001450407.1 CDS SGO_1118 NC_009785.1 1160796 1162661 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1160796..1162661 Streptococcus gordonii str. Challis substr. CH1 5599225 YP_001450408.1 CDS SGO_1119 NC_009785.1 1162811 1163959 R identified by match to protein family HMM PF04326; Abi-alpha protein complement(1162811..1163959) Streptococcus gordonii str. Challis substr. CH1 5598669 YP_001450409.1 CDS guaA NC_009785.1 1164136 1165692 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1164136..1165692) Streptococcus gordonii str. Challis substr. CH1 5599205 YP_001450410.1 CDS SGO_1121 NC_009785.1 1165835 1166533 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1165835..1166533 Streptococcus gordonii str. Challis substr. CH1 5597781 YP_001450411.1 CDS SGO_1122 NC_009785.1 1166693 1167025 D identified by match to protein family HMM PF04297; match to protein family HMM PF08281; putative DNA-binding protein 1166693..1167025 Streptococcus gordonii str. Challis substr. CH1 5598180 YP_001450412.1 CDS ffh NC_009785.1 1167272 1168846 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1167272..1168846 Streptococcus gordonii str. Challis substr. CH1 5598284 YP_001450413.1 CDS SGO_1124 NC_009785.1 1168925 1169728 D identified by match to protein family HMM PF06028; cell surface hydrolase 1168925..1169728 Streptococcus gordonii str. Challis substr. CH1 5597752 YP_001450414.1 CDS SGO_1125 NC_009785.1 1170166 1170786 D hypothetical protein 1170166..1170786 Streptococcus gordonii str. Challis substr. CH1 5598658 YP_001450415.1 CDS xerS NC_009785.1 1171511 1172581 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1171511..1172581 Streptococcus gordonii str. Challis substr. CH1 5599505 YP_001450416.1 CDS SGO_1127 NC_009785.1 1172658 1173290 R identified by match to protein family HMM PF00005; ABC transporter; ATP-binding transport protein complement(1172658..1173290) Streptococcus gordonii str. Challis substr. CH1 5599660 YP_001450417.1 CDS SGO_1128 NC_009785.1 1173292 1175370 R identified by match to protein family HMM TIGR01654; hypothetical protein complement(1173292..1175370) Streptococcus gordonii str. Challis substr. CH1 5598452 YP_001450418.1 CDS lplA NC_009785.1 1175450 1176439 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate protein ligase A complement(1175450..1176439) Streptococcus gordonii str. Challis substr. CH1 5598195 YP_001450419.1 CDS SGO_1130 NC_009785.1 1176506 1178209 R identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase complement(1176506..1178209) Streptococcus gordonii str. Challis substr. CH1 5598323 YP_001450420.1 CDS sucB NC_009785.1 1178288 1179331 R unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain; dihydrolipoamide acetyltransferase complement(1178288..1179331) Streptococcus gordonii str. Challis substr. CH1 5599173 YP_001450421.1 CDS SGO_1132 NC_009785.1 1179671 1180663 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; acetoin dehydrogenase complement(1179671..1180663) Streptococcus gordonii str. Challis substr. CH1 5597884 YP_001450422.1 CDS acoA NC_009785.1 1180680 1181648 R identified by match to protein family HMM PF00676; acetoin dehydrogenase complement(1180680..1181648) Streptococcus gordonii str. Challis substr. CH1 5599631 YP_001450423.1 CDS SGO_1134 NC_009785.1 1181865 1183031 R hypothetical protein complement(1181865..1183031) Streptococcus gordonii str. Challis substr. CH1 5599436 YP_001450424.1 CDS SGO_1135 NC_009785.1 1183044 1183784 R identified by match to protein family HMM PF00756; esterase superfamily protein complement(1183044..1183784) Streptococcus gordonii str. Challis substr. CH1 5599113 YP_001450425.1 CDS SGO_1136 NC_009785.1 1183834 1184682 R identified by match to protein family HMM PF00756; esterase superfamily protein complement(1183834..1184682) Streptococcus gordonii str. Challis substr. CH1 5597988 YP_001450426.1 CDS SGO_1137 NC_009785.1 1184752 1185549 R identified by match to protein family HMM PF01226; formate-nitrate transporter complement(1184752..1185549) Streptococcus gordonii str. Challis substr. CH1 5597972 YP_001450427.1 CDS SGO_1138 NC_009785.1 1185677 1186366 R identified by match to protein family HMM PF01832; autolysin, N-acetylmuramidase-like protein complement(1185677..1186366) Streptococcus gordonii str. Challis substr. CH1 5598147 YP_001450428.1 CDS engB NC_009785.1 1186500 1187093 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1186500..1187093) Streptococcus gordonii str. Challis substr. CH1 5598825 YP_001450429.1 CDS clpX NC_009785.1 1187103 1188332 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1187103..1188332) Streptococcus gordonii str. Challis substr. CH1 5599285 YP_001450430.1 CDS folA NC_009785.1 1188541 1189053 R identified by match to protein family HMM PF00186; dihydrofolate reductase complement(1188541..1189053) Streptococcus gordonii str. Challis substr. CH1 5599813 YP_001450431.1 CDS SGO_1142 NC_009785.1 1189206 1189700 R hypothetical protein complement(1189206..1189700) Streptococcus gordonii str. Challis substr. CH1 5598518 YP_001450432.1 CDS thyA NC_009785.1 1189831 1190670 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1189831..1190670) Streptococcus gordonii str. Challis substr. CH1 5599703 YP_001450433.1 CDS glcK NC_009785.1 1190769 1191728 R identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase complement(1190769..1191728) Streptococcus gordonii str. Challis substr. CH1 5598372 YP_001450434.1 CDS SGO_1145 NC_009785.1 1191903 1192748 R identified by match to protein family HMM PF06028; cell surface hydrolase complement(1191903..1192748) Streptococcus gordonii str. Challis substr. CH1 5598488 YP_001450435.1 CDS cshB NC_009785.1 1194141 1201019 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; surface-associated protein CshB complement(1194141..1201019) Streptococcus gordonii str. Challis substr. CH1 5599357 YP_001450436.1 CDS SGO_1149 NC_009785.1 1201197 1201799 R vaccine antigen A-like protein complement(1201197..1201799) Streptococcus gordonii str. Challis substr. CH1 5598478 YP_001450437.1 CDS SGO_1150 NC_009785.1 1201799 1202773 R hypothetical protein complement(1201799..1202773) Streptococcus gordonii str. Challis substr. CH1 5598108 YP_001450438.1 CDS glyA NC_009785.1 1202775 1204037 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1202775..1204037) Streptococcus gordonii str. Challis substr. CH1 5598919 YP_001450439.1 CDS SGO_1152 NC_009785.1 1204085 1204705 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(1204085..1204705) Streptococcus gordonii str. Challis substr. CH1 5598101 YP_001450440.1 CDS SGO_1153 NC_009785.1 1204668 1205498 R identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protoporphyrinogen oxidase complement(1204668..1205498) Streptococcus gordonii str. Challis substr. CH1 5598984 YP_001450441.1 CDS prfA NC_009785.1 1205498 1206577 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1205498..1206577) Streptococcus gordonii str. Challis substr. CH1 5599241 YP_001450442.1 CDS tdk NC_009785.1 1206610 1207185 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1206610..1207185) Streptococcus gordonii str. Challis substr. CH1 5598929 YP_001450443.1 CDS SGO_1156 NC_009785.1 1207307 1207489 D 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1207307..1207489 Streptococcus gordonii str. Challis substr. CH1 5599292 YP_001450444.1 CDS pbuX NC_009785.1 1207602 1208903 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease complement(1207602..1208903) Streptococcus gordonii str. Challis substr. CH1 5598401 YP_001450445.1 CDS xpt NC_009785.1 1208869 1209450 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(1208869..1209450) Streptococcus gordonii str. Challis substr. CH1 5599421 YP_001450446.1 CDS guaC NC_009785.1 1209631 1210614 R identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase complement(1209631..1210614) Streptococcus gordonii str. Challis substr. CH1 5598043 YP_001450447.1 CDS SGO_1160 NC_009785.1 1210799 1212136 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(1210799..1212136) Streptococcus gordonii str. Challis substr. CH1 5598215 YP_001450448.1 CDS tatA NC_009785.1 1212207 1212398 R identified by match to protein family HMM PF02416; twin arginine-targeting protein translocase complement(1212207..1212398) Streptococcus gordonii str. Challis substr. CH1 5599207 YP_001450449.1 CDS tatC NC_009785.1 1212398 1213114 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(1212398..1213114) Streptococcus gordonii str. Challis substr. CH1 5598069 YP_001450450.1 CDS SGO_1163 NC_009785.1 1213104 1214798 R identified by match to protein family HMM PF03239; FTR1 family iron permease complement(1213104..1214798) Streptococcus gordonii str. Challis substr. CH1 5598924 YP_001450451.1 CDS SGO_1164 NC_009785.1 1214776 1215984 R identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; tat translocated dye-type peroxidase family protein complement(1214776..1215984) Streptococcus gordonii str. Challis substr. CH1 5598137 YP_001450452.1 CDS SGO_1165 NC_009785.1 1215989 1216864 R identified by match to protein family HMM PF04302; putative lipoprotein complement(1215989..1216864) Streptococcus gordonii str. Challis substr. CH1 5599600 YP_001450453.1 CDS SGO_1166 NC_009785.1 1217000 1218550 R identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein complement(1217000..1218550) Streptococcus gordonii str. Challis substr. CH1 5599457 YP_001450454.1 CDS nox NC_009785.1 1218664 1220040 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; NADH oxidase complement(1218664..1220040) Streptococcus gordonii str. Challis substr. CH1 5599492 YP_001450455.1 CDS SGO_1168 NC_009785.1 1220349 1221248 D identified by match to protein family HMM PF02424; thiamin biosynthesis lipoprotein 1220349..1221248 Streptococcus gordonii str. Challis substr. CH1 5599126 YP_001450456.1 CDS SGO_1169 NC_009785.1 1221268 1221873 D identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1221268..1221873 Streptococcus gordonii str. Challis substr. CH1 5597903 YP_001450457.1 CDS SGO_1170 NC_009785.1 1221891 1223135 D identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1221891..1223135 Streptococcus gordonii str. Challis substr. CH1 5599697 YP_001450458.1 CDS SGO_1171 NC_009785.1 1223188 1223670 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein complement(1223188..1223670) Streptococcus gordonii str. Challis substr. CH1 5598821 YP_001450459.1 CDS SGO_1172 NC_009785.1 1223648 1223764 D hypothetical protein 1223648..1223764 Streptococcus gordonii str. Challis substr. CH1 5598427 YP_001450460.1 CDS ccdA2 NC_009785.1 1223822 1224532 R identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein complement(1223822..1224532) Streptococcus gordonii str. Challis substr. CH1 5599699 YP_001450461.1 CDS SGO_1174 NC_009785.1 1224825 1226528 R identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580; histidine kinase complement(1224825..1226528) Streptococcus gordonii str. Challis substr. CH1 5598632 YP_001450462.1 CDS SGO_1175 NC_009785.1 1226525 1227259 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; response regulator complement(1226525..1227259) Streptococcus gordonii str. Challis substr. CH1 5598849 YP_001450463.1 CDS SGO_1176 NC_009785.1 1227319 1228437 R identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase-like protein complement(1227319..1228437) Streptococcus gordonii str. Challis substr. CH1 5598117 YP_001450464.1 CDS SGO_1177 NC_009785.1 1228455 1229018 R identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein complement(1228455..1229018) Streptococcus gordonii str. Challis substr. CH1 5599369 YP_001450465.1 CDS SGO_1178 NC_009785.1 1229087 1229425 R putative lipoprotein complement(1229087..1229425) Streptococcus gordonii str. Challis substr. CH1 5597818 YP_001450466.1 CDS ccdA1 NC_009785.1 1229453 1230163 R identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein complement(1229453..1230163) Streptococcus gordonii str. Challis substr. CH1 5598414 YP_001450467.1 CDS SGO_1180 NC_009785.1 1230306 1231340 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase complement(1230306..1231340) Streptococcus gordonii str. Challis substr. CH1 5598484 YP_001450468.1 CDS SGO_1181 NC_009785.1 1231337 1232035 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1231337..1232035) Streptococcus gordonii str. Challis substr. CH1 5598965 YP_001450469.1 CDS SGO_1182 NC_009785.1 1232116 1234203 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; LPXTG cell wall surface protein complement(1232116..1234203) Streptococcus gordonii str. Challis substr. CH1 5599677 YP_001450470.1 CDS brnQ NC_009785.1 1234528 1235856 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(1234528..1235856) Streptococcus gordonii str. Challis substr. CH1 5598299 YP_001450471.1 CDS SGO_1184 NC_009785.1 1236051 1237073 D identified by match to protein family HMM PF02698; GdmH 1236051..1237073 Streptococcus gordonii str. Challis substr. CH1 5599601 YP_001450472.1 CDS SGO_1185 NC_009785.1 1237122 1237676 R identified by match to protein family HMM PF00583; acetyltransferase complement(1237122..1237676) Streptococcus gordonii str. Challis substr. CH1 5599761 YP_001450473.1 CDS SGO_1186 NC_009785.1 1237792 1239573 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein complement(1237792..1239573) Streptococcus gordonii str. Challis substr. CH1 5598161 YP_001450474.1 CDS SGO_1187 NC_009785.1 1239583 1241319 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein complement(1239583..1241319) Streptococcus gordonii str. Challis substr. CH1 5597805 YP_001450475.1 CDS SGO_1188 NC_009785.1 1241402 1241494 D hypothetical protein 1241402..1241494 Streptococcus gordonii str. Challis substr. CH1 5597904 YP_001450476.1 CDS SGO_1189 NC_009785.1 1241581 1242042 R putative lipoprotein complement(1241581..1242042) Streptococcus gordonii str. Challis substr. CH1 5597977 YP_001450477.1 CDS SGO_1190 NC_009785.1 1242231 1242641 D hypothetical protein 1242231..1242641 Streptococcus gordonii str. Challis substr. CH1 5599223 YP_001450478.1 CDS rplL NC_009785.1 1242254 1242622 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1242254..1242622) Streptococcus gordonii str. Challis substr. CH1 5598410 YP_001450479.1 CDS rplJ NC_009785.1 1242697 1243197 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1242697..1243197) Streptococcus gordonii str. Challis substr. CH1 5598131 YP_001450480.1 CDS gid NC_009785.1 1243450 1244784 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(1243450..1244784) Streptococcus gordonii str. Challis substr. CH1 5598455 YP_001450481.1 CDS SGO_1194 NC_009785.1 1244935 1245429 R phosphoribosylanthranilate isomerase complement(1244935..1245429) Streptococcus gordonii str. Challis substr. CH1 5599873 YP_001450482.1 CDS SGO_1195 NC_009785.1 1245449 1246156 R hypothetical protein complement(1245449..1246156) Streptococcus gordonii str. Challis substr. CH1 5597870 YP_001450483.1 CDS satD NC_009785.1 1246140 1246823 R identified by similarity to GB:AAG28336.1; SatD-like protein complement(1246140..1246823) Streptococcus gordonii str. Challis substr. CH1 5599614 YP_001450484.1 CDS topA NC_009785.1 1246933 1249026 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1246933..1249026) Streptococcus gordonii str. Challis substr. CH1 5599500 YP_001450485.1 CDS SGO_1198 NC_009785.1 1249110 1249952 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing Smf protein complement(1249110..1249952) Streptococcus gordonii str. Challis substr. CH1 5598429 YP_001450486.1 CDS SGO_1199 NC_009785.1 1250079 1250657 R identified by match to protein family HMM PF00132; acetyltransferase complement(1250079..1250657) Streptococcus gordonii str. Challis substr. CH1 5599279 YP_001450487.1 CDS SGO_1200 NC_009785.1 1250654 1251472 R identified by match to protein family HMM PF00874; match to protein family HMM PF03123; beta-glucoside operon antiterminator complement(1250654..1251472) Streptococcus gordonii str. Challis substr. CH1 5599081 YP_001450488.1 CDS rnhB NC_009785.1 1251490 1252254 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1251490..1252254) Streptococcus gordonii str. Challis substr. CH1 5598772 YP_001450489.1 CDS rbgA NC_009785.1 1252241 1253092 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1252241..1253092) Streptococcus gordonii str. Challis substr. CH1 5598151 YP_001450490.1 CDS SGO_1203 NC_009785.1 1253237 1253575 R identified by match to protein family HMM PF03477; anaerobic ribonucleotide reductase complement(1253237..1253575) Streptococcus gordonii str. Challis substr. CH1 5597894 YP_001450491.1 CDS SGO_1204 NC_009785.1 1253639 1253812 R hypothetical protein complement(1253639..1253812) Streptococcus gordonii str. Challis substr. CH1 5598996 YP_001450492.1 CDS dapA NC_009785.1 1253816 1254751 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1253816..1254751) Streptococcus gordonii str. Challis substr. CH1 5598154 YP_001450493.1 CDS asd NC_009785.1 1254960 1256036 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1254960..1256036) Streptococcus gordonii str. Challis substr. CH1 5598335 YP_001450494.1 CDS alkD NC_009785.1 1256509 1257168 R identified by match to protein family HMM PF08713; DNA alkylation repair protein complement(1256509..1257168) Streptococcus gordonii str. Challis substr. CH1 5599396 YP_001450495.1 CDS SGO_1208 NC_009785.1 1257172 1257663 R FAD-dependent oxidoreductase complement(1257172..1257663) Streptococcus gordonii str. Challis substr. CH1 5598156 YP_001450496.1 CDS SGO_1209 NC_009785.1 1257777 1258313 R identified by match to protein family HMM PF00583; acyltransferase complement(1257777..1258313) Streptococcus gordonii str. Challis substr. CH1 5597745 YP_001450497.1 CDS fhs-1 NC_009785.1 1258385 1260055 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1258385..1260055) Streptococcus gordonii str. Challis substr. CH1 5598611 YP_001450498.1 CDS SGO_1211 NC_009785.1 1260238 1260762 R hypothetical protein complement(1260238..1260762) Streptococcus gordonii str. Challis substr. CH1 5598446 YP_001450499.1 CDS coaB NC_009785.1 1260915 1261607 D identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114; phosphopantothenate--cysteine ligase 1260915..1261607 Streptococcus gordonii str. Challis substr. CH1 5598448 YP_001450500.1 CDS coaC NC_009785.1 1261604 1262155 D decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.; phosphopantothenoylcysteine decarboxylase 1261604..1262155 Streptococcus gordonii str. Challis substr. CH1 5597964 YP_001450501.1 CDS SGO_1214 NC_009785.1 1262139 1262702 D membrane protein 1262139..1262702 Streptococcus gordonii str. Challis substr. CH1 5599517 YP_001450502.1 CDS manB NC_009785.1 1262940 1264658 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 1262940..1264658 Streptococcus gordonii str. Challis substr. CH1 5598730 YP_001450503.1 CDS bta NC_009785.1 1264770 1265117 D identified by match to protein family HMM TIGR01295; bacteriocin transport accessory protein 1264770..1265117 Streptococcus gordonii str. Challis substr. CH1 5598847 YP_001450504.1 CDS SGO_1217 NC_009785.1 1265212 1265835 R putative lipoprotein complement(1265212..1265835) Streptococcus gordonii str. Challis substr. CH1 5598227 YP_001450505.1 CDS mutY NC_009785.1 1265895 1267043 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1265895..1267043) Streptococcus gordonii str. Challis substr. CH1 5599370 YP_001450506.1 CDS eutD NC_009785.1 1267108 1268085 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(1267108..1268085) Streptococcus gordonii str. Challis substr. CH1 5599573 YP_001450507.1 CDS SGO_1220 NC_009785.1 1268107 1268994 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; 23S rRNA pseudouridine synthase complement(1268107..1268994) Streptococcus gordonii str. Challis substr. CH1 5599040 YP_001450508.1 CDS ppnK NC_009785.1 1268984 1269808 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1268984..1269808) Streptococcus gordonii str. Challis substr. CH1 5598472 YP_001450509.1 CDS SGO_1222 NC_009785.1 1269792 1270457 R identified by match to protein family HMM PF04607; GTP pyrophosphokinase-like protein complement(1269792..1270457) Streptococcus gordonii str. Challis substr. CH1 5599555 YP_001450510.1 CDS SGO_1223 NC_009785.1 1270560 1271129 D identified by match to protein family HMM PF01928; adenylate cyclase 1270560..1271129 Streptococcus gordonii str. Challis substr. CH1 5598223 YP_001450511.1 CDS SGO_1224 NC_009785.1 1271189 1272157 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1271189..1272157 Streptococcus gordonii str. Challis substr. CH1 5598083 YP_001450512.1 CDS SGO_1225 NC_009785.1 1272167 1273294 D identified by match to protein family HMM PF00266; pyridoxal-phosphate dependent aminotransferase 1272167..1273294 Streptococcus gordonii str. Challis substr. CH1 5598103 YP_001450513.1 CDS SGO_1226 NC_009785.1 1273284 1273631 D identified by match to protein family HMM PF08866; hypothetical protein 1273284..1273631 Streptococcus gordonii str. Challis substr. CH1 5598941 YP_001450514.1 CDS SGO_1227 NC_009785.1 1273666 1273899 D hypothetical protein 1273666..1273899 Streptococcus gordonii str. Challis substr. CH1 5599120 YP_001450515.1 CDS SGO_1228 NC_009785.1 1274003 1274650 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1274003..1274650 Streptococcus gordonii str. Challis substr. CH1 5598794 YP_001450516.1 CDS radC NC_009785.1 1274670 1275350 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1274670..1275350) Streptococcus gordonii str. Challis substr. CH1 5598449 YP_001450517.1 CDS srtA NC_009785.1 1275432 1276187 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase A complement(1275432..1276187) Streptococcus gordonii str. Challis substr. CH1 5598325 YP_001450518.1 CDS gyrA NC_009785.1 1276191 1278644 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1276191..1278644) Streptococcus gordonii str. Challis substr. CH1 5598349 YP_001450519.1 CDS ldh NC_009785.1 1278842 1279828 D Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1278842..1279828 Streptococcus gordonii str. Challis substr. CH1 5598010 YP_001450520.1 CDS rpsA NC_009785.1 1280367 1281572 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1280367..1281572) Streptococcus gordonii str. Challis substr. CH1 5599108 YP_001450521.1 CDS SGO_1237 NC_009785.1 1281992 1282222 R hypothetical protein complement(1281992..1282222) Streptococcus gordonii str. Challis substr. CH1 5599537 YP_001450522.1 CDS ilvE NC_009785.1 1282321 1283343 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1282321..1283343) Streptococcus gordonii str. Challis substr. CH1 5599638 YP_001450523.1 CDS parC NC_009785.1 1283517 1285967 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1283517..1285967) Streptococcus gordonii str. Challis substr. CH1 5598720 YP_001450524.1 CDS SGO_1240 NC_009785.1 1286020 1286754 R identified by match to protein family HMM PF02517; CAAX amino protease complement(1286020..1286754) Streptococcus gordonii str. Challis substr. CH1 5598718 YP_001450525.1 CDS SGO_1241 NC_009785.1 1286735 1287568 R identified by match to protein family HMM PF04439; aminoglycoside adenylyltransferase complement(1286735..1287568) Streptococcus gordonii str. Challis substr. CH1 5598002 YP_001450526.1 CDS SGO_1242 NC_009785.1 1287709 1288059 R putative lipoprotein complement(1287709..1288059) Streptococcus gordonii str. Challis substr. CH1 5599584 YP_001450527.1 CDS SGO_1243 NC_009785.1 1288098 1288376 R hypothetical protein complement(1288098..1288376) Streptococcus gordonii str. Challis substr. CH1 5599853 YP_001450528.1 CDS SGO_1244 NC_009785.1 1288725 1290125 R hypothetical protein complement(1288725..1290125) Streptococcus gordonii str. Challis substr. CH1 5598650 YP_001450529.1 CDS parE NC_009785.1 1290293 1292242 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1290293..1292242) Streptococcus gordonii str. Challis substr. CH1 5597887 YP_001450530.1 CDS SGO_1246 NC_009785.1 1292405 1293049 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1292405..1293049 Streptococcus gordonii str. Challis substr. CH1 5599640 YP_001450531.1 CDS SGO_1247 NC_009785.1 1293067 1295253 R identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM TIGR01167; 5'-nucleotidase complement(1293067..1295253) Streptococcus gordonii str. Challis substr. CH1 5599669 YP_001450532.1 CDS pyrC NC_009785.1 1295394 1296662 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1295394..1296662) Streptococcus gordonii str. Challis substr. CH1 5598398 YP_001450533.1 CDS mutX NC_009785.1 1296675 1297139 R identified by match to protein family HMM PF00293; Mutator mutT protein complement(1296675..1297139) Streptococcus gordonii str. Challis substr. CH1 5599097 YP_001450534.1 CDS ung NC_009785.1 1297148 1297801 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1297148..1297801) Streptococcus gordonii str. Challis substr. CH1 5599509 YP_001450535.1 CDS SGO_1251 NC_009785.1 1297836 1298588 R hypothetical protein complement(1297836..1298588) Streptococcus gordonii str. Challis substr. CH1 5598774 YP_001450536.1 CDS SGO_1252 NC_009785.1 1298591 1300222 R integral membrane protein complement(1298591..1300222) Streptococcus gordonii str. Challis substr. CH1 5597822 YP_001450537.1 CDS pyrE NC_009785.1 1300279 1300908 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1300279..1300908) Streptococcus gordonii str. Challis substr. CH1 5597788 YP_001450538.1 CDS pyrF NC_009785.1 1300988 1301680 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1300988..1301680) Streptococcus gordonii str. Challis substr. CH1 5599184 YP_001450539.1 CDS pyrd NC_009785.1 1301930 1302868 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1301930..1302868) Streptococcus gordonii str. Challis substr. CH1 5599643 YP_001450540.1 CDS SGO_1256 NC_009785.1 1302881 1303687 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(1302881..1303687) Streptococcus gordonii str. Challis substr. CH1 5598337 YP_001450541.1 CDS SGO_1257 NC_009785.1 1303875 1304783 D identified by match to protein family HMM PF00126; LysR family transcriptional regulator 1303875..1304783 Streptococcus gordonii str. Challis substr. CH1 5597839 YP_001450542.1 CDS SGO_1258 NC_009785.1 1304824 1305555 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(1304824..1305555) Streptococcus gordonii str. Challis substr. CH1 5599229 YP_001450543.1 CDS SGO_1259 NC_009785.1 1305567 1306328 R histidine protein kinase complement(1305567..1306328) Streptococcus gordonii str. Challis substr. CH1 5599862 YP_001450544.1 CDS deoD NC_009785.1 1306325 1307038 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(1306325..1307038) Streptococcus gordonii str. Challis substr. CH1 5599062 YP_001450545.1 CDS SGO_1261 NC_009785.1 1307260 1307970 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(1307260..1307970) Streptococcus gordonii str. Challis substr. CH1 5598308 YP_001450546.1 CDS SGO_1262 NC_009785.1 1307967 1309196 R identified by match to protein family HMM PF00654; voltage-gated chloride channel family lipoprotein complement(1307967..1309196) Streptococcus gordonii str. Challis substr. CH1 5599486 YP_001450547.1 CDS SGO_1263 NC_009785.1 1309207 1310016 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(1309207..1310016) Streptococcus gordonii str. Challis substr. CH1 5598537 YP_001450548.1 CDS deoB NC_009785.1 1310133 1311344 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(1310133..1311344) Streptococcus gordonii str. Challis substr. CH1 5599408 YP_001450549.1 CDS rpiA NC_009785.1 1311357 1312034 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1311357..1312034) Streptococcus gordonii str. Challis substr. CH1 5599732 YP_001450550.1 CDS trmE NC_009785.1 1312265 1313638 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1312265..1313638 Streptococcus gordonii str. Challis substr. CH1 5598189 YP_001450551.1 CDS SGO_1267 NC_009785.1 1313789 1314292 R identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein complement(1313789..1314292) Streptococcus gordonii str. Challis substr. CH1 5599828 YP_001450552.1 CDS SGO_1268 NC_009785.1 1314798 1315496 R identified by match to protein family HMM PF04172; murein hydrolase export regulator complement(1314798..1315496) Streptococcus gordonii str. Challis substr. CH1 5598972 YP_001450553.1 CDS SGO_1269 NC_009785.1 1315489 1315869 R identified by match to protein family HMM PF03788; murein hydrolase exporter complement(1315489..1315869) Streptococcus gordonii str. Challis substr. CH1 5597783 YP_001450554.1 CDS SGO_1272 NC_009785.1 1316645 1316983 R identified by match to protein family HMM PF01883; hypothetical protein complement(1316645..1316983) Streptococcus gordonii str. Challis substr. CH1 5599835 YP_001450555.1 CDS rpoD NC_009785.1 1317036 1318148 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1317036..1318148) Streptococcus gordonii str. Challis substr. CH1 5597807 YP_001450556.1 CDS dnaG NC_009785.1 1318151 1319932 R synthesizes RNA primers at the replication forks; DNA primase complement(1318151..1319932) Streptococcus gordonii str. Challis substr. CH1 5599720 YP_001450557.1 CDS mscL NC_009785.1 1320138 1320518 D identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 1320138..1320518 Streptococcus gordonii str. Challis substr. CH1 5597749 YP_001450558.1 CDS rpsU NC_009785.1 1320626 1320802 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1320626..1320802) Streptococcus gordonii str. Challis substr. CH1 5599133 YP_001450559.1 CDS SGO_1277 NC_009785.1 1320929 1321612 R hypothetical protein complement(1320929..1321612) Streptococcus gordonii str. Challis substr. CH1 5598182 YP_001450560.1 CDS SGO_1278 NC_009785.1 1321623 1321973 R hypothetical protein complement(1321623..1321973) Streptococcus gordonii str. Challis substr. CH1 5598469 YP_001450561.1 CDS SGO_1279 NC_009785.1 1322055 1322354 R hypothetical protein complement(1322055..1322354) Streptococcus gordonii str. Challis substr. CH1 5598432 YP_001450562.1 CDS SGO_1280 NC_009785.1 1322563 1324008 R identified by match to protein family HMM PF03413; match to protein family HMM PF05569; putative membrane-associated Zn-dependent protease complement(1322563..1324008) Streptococcus gordonii str. Challis substr. CH1 5597987 YP_001450563.1 CDS SGO_1281 NC_009785.1 1324023 1324400 R identified by match to protein family HMM PF03965; penicillinase repressor complement(1324023..1324400) Streptococcus gordonii str. Challis substr. CH1 5599150 YP_001450564.1 CDS SGO_1282 NC_009785.1 1324509 1324862 R identified by match to protein family HMM PF06993; integral membrane protein complement(1324509..1324862) Streptococcus gordonii str. Challis substr. CH1 5599355 YP_001450565.1 CDS SGO_1283 NC_009785.1 1325055 1326371 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 1325055..1326371 Streptococcus gordonii str. Challis substr. CH1 5599155 YP_001450566.1 CDS SGO_1284 NC_009785.1 1326484 1327452 D identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin-disulfide reductase 1326484..1327452 Streptococcus gordonii str. Challis substr. CH1 5598538 YP_001450567.1 CDS SGO_1285 NC_009785.1 1327835 1329361 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1327835..1329361 Streptococcus gordonii str. Challis substr. CH1 5597859 YP_001450568.1 CDS SGO_1286 NC_009785.1 1329642 1330370 R hypothetical protein complement(1329642..1330370) Streptococcus gordonii str. Challis substr. CH1 5598354 YP_001450569.1 CDS SGO_1287 NC_009785.1 1330704 1331339 R identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator complement(1330704..1331339) Streptococcus gordonii str. Challis substr. CH1 5599744 YP_001450570.1 CDS SGO_1288 NC_009785.1 1331531 1332934 D identified by match to protein family HMM PF07690; multidrug resistance protein B 1331531..1332934 Streptococcus gordonii str. Challis substr. CH1 5597889 YP_001450571.1 CDS SGO_1289 NC_009785.1 1332921 1333508 D hypothetical protein 1332921..1333508 Streptococcus gordonii str. Challis substr. CH1 5597787 YP_001450572.1 CDS SGO_1290 NC_009785.1 1333628 1335364 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein complement(1333628..1335364) Streptococcus gordonii str. Challis substr. CH1 5598951 YP_001450573.1 CDS SGO_1291 NC_009785.1 1335354 1337096 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; permease ATP-binding protein SP1358 complement(1335354..1337096) Streptococcus gordonii str. Challis substr. CH1 5598061 YP_001450574.1 CDS SGO_1292 NC_009785.1 1337193 1338380 R identified by match to protein family HMM PF07690; transport protein complement(1337193..1338380) Streptococcus gordonii str. Challis substr. CH1 5598748 YP_001450575.1 CDS asnC NC_009785.1 1338537 1339934 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1338537..1339934) Streptococcus gordonii str. Challis substr. CH1 5597975 YP_001450576.1 CDS SGO_1295 NC_009785.1 1340468 1340938 R putative lipoprotein complement(1340468..1340938) Streptococcus gordonii str. Challis substr. CH1 5598643 YP_001450577.1 CDS SGO_1296 NC_009785.1 1341171 1341632 R hypothetical protein complement(1341171..1341632) Streptococcus gordonii str. Challis substr. CH1 5598194 YP_001450578.1 CDS aspC NC_009785.1 1341636 1342814 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1341636..1342814) Streptococcus gordonii str. Challis substr. CH1 5597941 YP_001450579.1 CDS SGO_1298 NC_009785.1 1342811 1343299 R hypothetical protein complement(1342811..1343299) Streptococcus gordonii str. Challis substr. CH1 5598791 YP_001450580.1 CDS SGO_1299 NC_009785.1 1343375 1343827 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1343375..1343827 Streptococcus gordonii str. Challis substr. CH1 5597806 YP_001450581.1 CDS SGO_1300 NC_009785.1 1343915 1344301 D identified by match to protein family HMM PF03358; NADPH-dependent reductase 1343915..1344301 Streptococcus gordonii str. Challis substr. CH1 5598122 YP_001450582.1 CDS SGO_1301 NC_009785.1 1344335 1344460 D hypothetical protein 1344335..1344460 Streptococcus gordonii str. Challis substr. CH1 5599428 YP_001450583.1 CDS SGO_1302 NC_009785.1 1344603 1346069 R identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322; beta-fructofuranosidase/sucrose 6 phosphate hydrolase complement(1344603..1346069) Streptococcus gordonii str. Challis substr. CH1 5599068 YP_001450584.1 CDS SGO_1303 NC_009785.1 1346078 1346932 R identified by match to protein family HMM PF00528; transmembrane permease MsmG complement(1346078..1346932) Streptococcus gordonii str. Challis substr. CH1 5598291 YP_001450585.1 CDS SGO_1304 NC_009785.1 1346934 1347818 R identified by match to protein family HMM PF00528; transmembrane permease MsmF complement(1346934..1347818) Streptococcus gordonii str. Challis substr. CH1 5599455 YP_001450586.1 CDS SGO_1305 NC_009785.1 1347982 1349304 R identified by match to protein family HMM PF01547; substrate-binding protein MsmE complement(1347982..1349304) Streptococcus gordonii str. Challis substr. CH1 5598958 YP_001450587.1 CDS SGO_1306 NC_009785.1 1349417 1350436 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; transcriptional repressor MsmR complement(1349417..1350436) Streptococcus gordonii str. Challis substr. CH1 5598728 YP_001450588.1 CDS SGO_1307 NC_009785.1 1350525 1351259 R identified by match to protein family HMM PF03883; hypothetical protein complement(1350525..1351259) Streptococcus gordonii str. Challis substr. CH1 5598759 YP_001450589.1 CDS SGO_1308 NC_009785.1 1351380 1351844 D identified by match to protein family HMM PF08876; hypothetical protein 1351380..1351844 Streptococcus gordonii str. Challis substr. CH1 5597830 YP_001450590.1 CDS hlyIII NC_009785.1 1351819 1352466 D identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III-like protein 1351819..1352466 Streptococcus gordonii str. Challis substr. CH1 5599683 YP_001450591.1 CDS SGO_1310 NC_009785.1 1352620 1352829 R hypothetical protein complement(1352620..1352829) Streptococcus gordonii str. Challis substr. CH1 5598827 YP_001450592.1 CDS hemH NC_009785.1 1352915 1354009 R identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(1352915..1354009) Streptococcus gordonii str. Challis substr. CH1 5599403 YP_001450593.1 CDS pepT NC_009785.1 1354152 1355378 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1354152..1355378 Streptococcus gordonii str. Challis substr. CH1 5599778 YP_001450594.1 CDS SGO_1313 NC_009785.1 1355539 1358883 R identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363; histidine triad A protein complement(1355539..1358883) Streptococcus gordonii str. Challis substr. CH1 5599535 YP_001450595.1 CDS SGO_1314 NC_009785.1 1358892 1359824 R identified by match to protein family HMM PF01297; metal binding lipoprotein complement(1358892..1359824) Streptococcus gordonii str. Challis substr. CH1 5598797 YP_001450596.1 CDS trmD NC_009785.1 1360140 1360871 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1360140..1360871) Streptococcus gordonii str. Challis substr. CH1 5598184 YP_001450597.1 CDS rimM NC_009785.1 1360861 1361379 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1360861..1361379) Streptococcus gordonii str. Challis substr. CH1 5599820 YP_001450598.1 CDS SGO_1317 NC_009785.1 1361578 1362036 D hypothetical protein 1361578..1362036 Streptococcus gordonii str. Challis substr. CH1 5598158 YP_001450599.1 CDS SGO_1318 NC_009785.1 1362290 1362844 R hypothetical protein complement(1362290..1362844) Streptococcus gordonii str. Challis substr. CH1 5598701 YP_001450600.1 CDS SGO_1319 NC_009785.1 1363011 1363676 R identified by match to protein family HMM PF02254; Trk family potassium uptake protein complement(1363011..1363676) Streptococcus gordonii str. Challis substr. CH1 5598817 YP_001450601.1 CDS ntpJ NC_009785.1 1363687 1365036 R identified by match to protein family HMM PF02386; sodium transport family protein complement(1363687..1365036) Streptococcus gordonii str. Challis substr. CH1 5598970 YP_001450602.1 CDS SGO_1321 NC_009785.1 1365033 1365584 R hypothetical protein complement(1365033..1365584) Streptococcus gordonii str. Challis substr. CH1 5599020 YP_001450603.1 CDS SGO_1322 NC_009785.1 1366017 1366256 R KH domain-containing protein complement(1366017..1366256) Streptococcus gordonii str. Challis substr. CH1 5599160 YP_001450604.1 CDS rpsP NC_009785.1 1366275 1366547 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1366275..1366547) Streptococcus gordonii str. Challis substr. CH1 5598249 YP_001450605.1 CDS SGO_1324 NC_009785.1 1366668 1367357 R hypothetical protein complement(1366668..1367357) Streptococcus gordonii str. Challis substr. CH1 5597981 YP_001450606.1 CDS SGO_1325 NC_009785.1 1367464 1368420 R identified by match to protein family HMM PF02517; CAAX amino protease complement(1367464..1368420) Streptococcus gordonii str. Challis substr. CH1 5598413 YP_001450607.1 CDS SGO_1326 NC_009785.1 1368444 1369064 R identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein complement(1368444..1369064) Streptococcus gordonii str. Challis substr. CH1 5599437 YP_001450608.1 CDS SGO_1327 NC_009785.1 1369057 1369827 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD family hydrolase complement(1369057..1369827) Streptococcus gordonii str. Challis substr. CH1 5598016 YP_001450609.1 CDS SGO_1328 NC_009785.1 1369839 1370579 R identified by match to protein family HMM PF01643; hypothetical protein complement(1369839..1370579) Streptococcus gordonii str. Challis substr. CH1 5598955 YP_001450610.1 CDS SGO_1329 NC_009785.1 1370583 1371713 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1370583..1371713) Streptococcus gordonii str. Challis substr. CH1 5598416 YP_001450611.1 CDS SGO_1330 NC_009785.1 1371850 1373595 R identified by match to protein family HMM PF00005; transporter complement(1371850..1373595) Streptococcus gordonii str. Challis substr. CH1 5599752 YP_001450612.1 CDS SGO_1331 NC_009785.1 1373588 1375354 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; HlyB/MsbA family ABC transporter complement(1373588..1375354) Streptococcus gordonii str. Challis substr. CH1 5598899 YP_001450613.1 CDS SGO_1332 NC_009785.1 1375373 1375984 R identified by match to protein family HMM PF00440; putative transcriptional regulator complement(1375373..1375984) Streptococcus gordonii str. Challis substr. CH1 5598453 YP_001450614.1 CDS gnaT NC_009785.1 1376158 1376574 R identified by match to protein family HMM PF00583; acetyltransferase complement(1376158..1376574) Streptococcus gordonii str. Challis substr. CH1 5599713 YP_001450615.1 CDS cysD NC_009785.1 1376611 1377891 R identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine (thiol)-lyase complement(1376611..1377891) Streptococcus gordonii str. Challis substr. CH1 5599768 YP_001450616.1 CDS ntpA NC_009785.1 1377990 1378385 R identified by match to protein family HMM PF00293; dATP pyrophosphohydrolase complement(1377990..1378385) Streptococcus gordonii str. Challis substr. CH1 5599057 YP_001450617.1 CDS pcrA NC_009785.1 1378385 1380673 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(1378385..1380673) Streptococcus gordonii str. Challis substr. CH1 5599367 YP_001450618.1 CDS SGO_1337 NC_009785.1 1380876 1382063 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1380876..1382063 Streptococcus gordonii str. Challis substr. CH1 5598049 YP_001450619.1 CDS SGO_1338 NC_009785.1 1382165 1382722 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Signal peptidase I complement(1382165..1382722) Streptococcus gordonii str. Challis substr. CH1 5598918 YP_001450620.1 CDS pyk NC_009785.1 1382812 1384317 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1382812..1384317) Streptococcus gordonii str. Challis substr. CH1 5599549 YP_001450621.1 CDS SGO_1340 NC_009785.1 1384370 1385380 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1384370..1385380) Streptococcus gordonii str. Challis substr. CH1 5598502 YP_001450622.1 CDS dnaE NC_009785.1 1385452 1388553 R Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(1385452..1388553) Streptococcus gordonii str. Challis substr. CH1 5598572 YP_001450623.1 CDS SGO_1342 NC_009785.1 1388817 1389521 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1388817..1389521 Streptococcus gordonii str. Challis substr. CH1 5599684 YP_001450624.1 CDS SGO_1343 NC_009785.1 1389533 1390333 D ABC transporter ATP-binding protein SP1715; ABC transporter permease 1389533..1390333 Streptococcus gordonii str. Challis substr. CH1 5599461 YP_001450625.1 CDS SGO_1344 NC_009785.1 1390453 1390824 D hypothetical protein 1390453..1390824 Streptococcus gordonii str. Challis substr. CH1 5598098 YP_001450626.1 CDS SGO_1345 NC_009785.1 1390809 1391042 D hypothetical protein 1390809..1391042 Streptococcus gordonii str. Challis substr. CH1 5598879 YP_001450627.1 CDS SGO_1346 NC_009785.1 1391140 1391451 R hypothetical protein complement(1391140..1391451) Streptococcus gordonii str. Challis substr. CH1 5599806 YP_001450628.1 CDS SGO_1347 NC_009785.1 1391498 1392343 R membrane associated lipoprotein complement(1391498..1392343) Streptococcus gordonii str. Challis substr. CH1 5598100 YP_001450629.1 CDS SGO_1348 NC_009785.1 1392378 1392920 R identified by match to protein family HMM PF08020; putative cytoplasmic protein complement(1392378..1392920) Streptococcus gordonii str. Challis substr. CH1 5599051 YP_001450630.1 CDS SGO_1349 NC_009785.1 1392980 1393477 R hypothetical protein complement(1392980..1393477) Streptococcus gordonii str. Challis substr. CH1 5598430 YP_001450631.1 CDS SGO_1350 NC_009785.1 1393304 1393411 D hypothetical protein 1393304..1393411 Streptococcus gordonii str. Challis substr. CH1 5598645 YP_001450632.1 CDS SGO_1351 NC_009785.1 1393564 1395321 R identified by match to protein family HMM PF00128; match to protein family HMM PF02903; neopullulanase alpha amylase subunit complement(1393564..1395321) Streptococcus gordonii str. Challis substr. CH1 5598294 YP_001450633.1 CDS SGO_1352 NC_009785.1 1395626 1395769 R hypothetical protein complement(1395626..1395769) Streptococcus gordonii str. Challis substr. CH1 5599534 YP_001450634.1 CDS SGO_1353 NC_009785.1 1395932 1396405 R hypothetical protein complement(1395932..1396405) Streptococcus gordonii str. Challis substr. CH1 5597744 YP_001450635.1 CDS SGO_1354 NC_009785.1 1396503 1397081 R hypothetical protein complement(1396503..1397081) Streptococcus gordonii str. Challis substr. CH1 5598625 YP_001450636.1 CDS SGO_1355 NC_009785.1 1397321 1397935 R putative lipoprotein complement(1397321..1397935) Streptococcus gordonii str. Challis substr. CH1 5599438 YP_001450637.1 CDS SGO_1356 NC_009785.1 1398112 1398504 R hypothetical protein complement(1398112..1398504) Streptococcus gordonii str. Challis substr. CH1 5598889 YP_001450638.1 CDS SGO_1357 NC_009785.1 1398509 1398778 R hypothetical protein complement(1398509..1398778) Streptococcus gordonii str. Challis substr. CH1 5598224 YP_001450639.1 CDS SGO_1358 NC_009785.1 1399556 1401019 R identified by match to protein family HMM PF00005; ABC transporter ATP binding/permease complement(1399556..1401019) Streptococcus gordonii str. Challis substr. CH1 5598022 YP_001450640.1 CDS rggB NC_009785.1 1401386 1402249 D identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; putative transcriptional regulator RggB 1401386..1402249 Streptococcus gordonii str. Challis substr. CH1 5598901 YP_001450641.1 CDS SGO_1360 NC_009785.1 1402403 1403944 R identified by match to protein family HMM PF00005; ABC transporter complement(1402403..1403944) Streptococcus gordonii str. Challis substr. CH1 5598961 YP_001450642.1 CDS SGO_1361 NC_009785.1 1404060 1404914 R identified by match to protein family HMM PF03747; ADP-ribosylhydrolase complement(1404060..1404914) Streptococcus gordonii str. Challis substr. CH1 5598217 YP_001450643.1 CDS SGO_1362 NC_009785.1 1404955 1405572 R hypothetical protein complement(1404955..1405572) Streptococcus gordonii str. Challis substr. CH1 5598203 YP_001450644.1 CDS SGO_1363 NC_009785.1 1405817 1406623 R alpha/beta fold family hydrolase complement(1405817..1406623) Streptococcus gordonii str. Challis substr. CH1 5598590 YP_001450645.1 CDS rumA-2 NC_009785.1 1406864 1408234 R identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(1406864..1408234) Streptococcus gordonii str. Challis substr. CH1 5598872 YP_001450646.1 CDS SGO_1365 NC_009785.1 1408320 1409651 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcription regulator yrfE complement(1408320..1409651) Streptococcus gordonii str. Challis substr. CH1 5598388 YP_001450647.1 CDS pheA NC_009785.1 1409666 1410493 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(1409666..1410493) Streptococcus gordonii str. Challis substr. CH1 5598939 YP_001450648.1 CDS aroK NC_009785.1 1410484 1410969 R identified by match to protein family HMM PF01202; shikimate kinase complement(1410484..1410969) Streptococcus gordonii str. Challis substr. CH1 5599782 YP_001450649.1 CDS aroA NC_009785.1 1410962 1412245 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1410962..1412245) Streptococcus gordonii str. Challis substr. CH1 5599796 YP_001450650.1 CDS SGO_1369 NC_009785.1 1412383 1413297 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; L-2-hydroxyisocaproate dehydrogenase complement(1412383..1413297) Streptococcus gordonii str. Challis substr. CH1 5598290 YP_001450651.1 CDS SGO_1370 NC_009785.1 1413413 1413751 R identified by match to protein family HMM PF06133; hypothetical protein complement(1413413..1413751) Streptococcus gordonii str. Challis substr. CH1 5599859 YP_001450652.1 CDS SGO_1371 NC_009785.1 1413769 1414875 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1413769..1414875) Streptococcus gordonii str. Challis substr. CH1 5598375 YP_001450653.1 CDS aroC NC_009785.1 1414892 1416058 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1414892..1416058) Streptococcus gordonii str. Challis substr. CH1 5598067 YP_001450654.1 CDS aroB NC_009785.1 1416147 1417214 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1416147..1417214) Streptococcus gordonii str. Challis substr. CH1 5598121 YP_001450655.1 CDS aroE NC_009785.1 1417293 1418150 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1417293..1418150) Streptococcus gordonii str. Challis substr. CH1 5598500 YP_001450656.1 CDS aroD NC_009785.1 1418140 1418817 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1418140..1418817) Streptococcus gordonii str. Challis substr. CH1 5599323 YP_001450657.1 CDS SGO_1376 NC_009785.1 1418814 1419977 R methyltransferase complement(1418814..1419977) Streptococcus gordonii str. Challis substr. CH1 5599719 YP_001450658.1 CDS SGO_1377 NC_009785.1 1420226 1422418 D identified by match to protein family HMM PF00884; sulfatase 1420226..1422418 Streptococcus gordonii str. Challis substr. CH1 5597933 YP_001450659.1 CDS SGO_1378 NC_009785.1 1424302 1425339 R hypothetical protein complement(1424302..1425339) Streptococcus gordonii str. Challis substr. CH1 5599775 YP_001450660.1 CDS cas2 NC_009785.1 1425342 1425665 R identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(1425342..1425665) Streptococcus gordonii str. Challis substr. CH1 5598504 YP_001450661.1 CDS cas1 NC_009785.1 1425655 1426578 R identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(1425655..1426578) Streptococcus gordonii str. Challis substr. CH1 5598439 YP_001450662.1 CDS csn1 NC_009785.1 1426750 1430160 R identified by match to protein family HMM TIGR01865; CRISPR-associated endonuclease Csn1 family protein complement(1426750..1430160) Streptococcus gordonii str. Challis substr. CH1 5599802 YP_001450663.1 CDS rplS NC_009785.1 1430566 1430913 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1430566..1430913) Streptococcus gordonii str. Challis substr. CH1 5598526 YP_001450664.1 CDS SGO_1384 NC_009785.1 1431029 1431355 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1431029..1431355) Streptococcus gordonii str. Challis substr. CH1 5599345 YP_001450665.1 CDS SGO_1385 NC_009785.1 1431352 1431726 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1431352..1431726) Streptococcus gordonii str. Challis substr. CH1 5599025 YP_001450666.1 CDS SGO_1386 NC_009785.1 1431723 1431989 R identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; hypothetical protein complement(1431723..1431989) Streptococcus gordonii str. Challis substr. CH1 5598883 YP_001450667.1 CDS sufB-2 NC_009785.1 1432473 1433855 R identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB complement(1432473..1433855) Streptococcus gordonii str. Challis substr. CH1 5599772 YP_001450668.1 CDS pulA-1 NC_009785.1 1434045 1436342 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase complement(1434045..1436342) Streptococcus gordonii str. Challis substr. CH1 5598527 YP_001450669.1 CDS SGO_1389 NC_009785.1 1436361 1437317 R similar to YegS from E. coli; putative lipid kinase complement(1436361..1437317) Streptococcus gordonii str. Challis substr. CH1 5597879 YP_001450670.1 CDS ligA NC_009785.1 1437327 1439285 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1437327..1439285) Streptococcus gordonii str. Challis substr. CH1 5598830 YP_001450671.1 CDS SGO_1391 NC_009785.1 1439432 1439941 R identified by match to protein family HMM PF06177; hypothetical protein complement(1439432..1439941) Streptococcus gordonii str. Challis substr. CH1 5599520 YP_001450672.1 CDS SGO_1392 NC_009785.1 1440102 1440539 D identified by match to protein family HMM PF04138; mesH protein 1440102..1440539 Streptococcus gordonii str. Challis substr. CH1 5599565 YP_001450673.1 CDS SGO_1393 NC_009785.1 1440571 1440993 D identified by match to protein family HMM PF00583; acetyltransferase 1440571..1440993 Streptococcus gordonii str. Challis substr. CH1 5598200 YP_001450674.1 CDS SGO_1394 NC_009785.1 1441093 1441800 R identified by match to protein family HMM PF03483; hypothetical protein complement(1441093..1441800) Streptococcus gordonii str. Challis substr. CH1 5599682 YP_001450675.1 CDS SGO_1395 NC_009785.1 1441818 1442267 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1441818..1442267) Streptococcus gordonii str. Challis substr. CH1 5598824 YP_001450676.1 CDS SGO_1396 NC_009785.1 1442482 1443375 R identified by match to protein family HMM PF03631; ribonuclease BN family protein complement(1442482..1443375) Streptococcus gordonii str. Challis substr. CH1 5597955 YP_001450677.1 CDS map NC_009785.1 1443524 1444381 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase complement(1443524..1444381) Streptococcus gordonii str. Challis substr. CH1 5597869 YP_001450678.1 CDS SGO_1398 NC_009785.1 1444403 1445680 R identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085; hypothetical protein complement(1444403..1445680) Streptococcus gordonii str. Challis substr. CH1 5599822 YP_001450679.1 CDS SGO_1399 NC_009785.1 1445673 1446224 R identified by match to protein family HMM PF00583; acetyltransferase complement(1445673..1446224) Streptococcus gordonii str. Challis substr. CH1 5599502 YP_001450680.1 CDS murA-2 NC_009785.1 1446272 1447534 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1446272..1447534) Streptococcus gordonii str. Challis substr. CH1 5598327 YP_001450681.1 CDS SGO_1401 NC_009785.1 1447747 1448496 R identified by match to protein family HMM PF02811; hypothetical protein complement(1447747..1448496) Streptococcus gordonii str. Challis substr. CH1 5597934 YP_001450682.1 CDS hisE NC_009785.1 1448530 1448844 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(1448530..1448844) Streptococcus gordonii str. Challis substr. CH1 5598988 YP_001450683.1 CDS hisIE NC_009785.1 1448962 1449306 R identified by match to protein family HMM PF01502; phosphoribosyl-AMP cyclohydrolase complement(1448962..1449306) Streptococcus gordonii str. Challis substr. CH1 5597901 YP_001450684.1 CDS hisF NC_009785.1 1449306 1450064 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1449306..1450064) Streptococcus gordonii str. Challis substr. CH1 5598268 YP_001450685.1 CDS hisA NC_009785.1 1450067 1450789 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1450067..1450789) Streptococcus gordonii str. Challis substr. CH1 5597928 YP_001450686.1 CDS hisH NC_009785.1 1450767 1451390 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1450767..1451390) Streptococcus gordonii str. Challis substr. CH1 5598473 YP_001450687.1 CDS hisB NC_009785.1 1451425 1452009 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(1451425..1452009) Streptococcus gordonii str. Challis substr. CH1 5599353 YP_001450688.1 CDS hisD NC_009785.1 1452021 1453313 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1452021..1453313) Streptococcus gordonii str. Challis substr. CH1 5599071 YP_001450689.1 CDS hisG NC_009785.1 1453310 1453954 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(1453310..1453954) Streptococcus gordonii str. Challis substr. CH1 5598510 YP_001450690.1 CDS SGO_1410 NC_009785.1 1453951 1454940 R identified by match to protein family HMM PF00587; tRNA synthetase class II core domain-containing protein complement(1453951..1454940) Streptococcus gordonii str. Challis substr. CH1 5598736 YP_001450691.1 CDS hisC NC_009785.1 1454996 1456054 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1454996..1456054) Streptococcus gordonii str. Challis substr. CH1 5599083 YP_001450692.1 CDS SGO_1412 NC_009785.1 1456527 1456832 R hypothetical protein complement(1456527..1456832) Streptococcus gordonii str. Challis substr. CH1 5599510 YP_001450693.1 CDS SGO_1413 NC_009785.1 1456866 1460516 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; first chain of major exonuclease RexA complement(1456866..1460516) Streptococcus gordonii str. Challis substr. CH1 5598196 YP_001450694.1 CDS rexB NC_009785.1 1460513 1463794 R identified by match to protein family HMM TIGR02774; putative exonuclease RexB complement(1460513..1463794) Streptococcus gordonii str. Challis substr. CH1 5598829 YP_001450695.1 CDS SGO_1415 NC_009785.1 1464176 1467349 R identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM TIGR01167; LPXTG cell wall surface protein, X-prolyl dipeptidylaminopeptidase complement(1464176..1467349) Streptococcus gordonii str. Challis substr. CH1 5599255 YP_001450696.1 CDS SGO_1416 NC_009785.1 1467988 1469349 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; putative histidine kinase complement(1467988..1469349) Streptococcus gordonii str. Challis substr. CH1 5598241 YP_001450697.1 CDS SGO_1417 NC_009785.1 1469346 1470002 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator protein complement(1469346..1470002) Streptococcus gordonii str. Challis substr. CH1 5599209 YP_001450698.1 CDS SGO_1418 NC_009785.1 1470021 1471238 R identified by match to protein family HMM PF02687; ATP-binding cassette transporter-like protein complement(1470021..1471238) Streptococcus gordonii str. Challis substr. CH1 5599067 YP_001450699.1 CDS SGO_1419 NC_009785.1 1471246 1471926 R identified by match to protein family HMM PF00005; ATP-binding cassette protein complement(1471246..1471926) Streptococcus gordonii str. Challis substr. CH1 5597926 YP_001450700.1 CDS SGO_1420 NC_009785.1 1471913 1473166 R ATP-binding cassette transporter-like protein complement(1471913..1473166) Streptococcus gordonii str. Challis substr. CH1 5597764 YP_001450701.1 CDS SGO_1421 NC_009785.1 1473197 1473460 R ATP-binding cassette lipoprotein complement(1473197..1473460) Streptococcus gordonii str. Challis substr. CH1 5599153 YP_001450702.1 CDS SGO_1422 NC_009785.1 1473735 1474745 D hypothetical protein 1473735..1474745 Streptococcus gordonii str. Challis substr. CH1 5599309 YP_001450703.1 CDS SGO_1423 NC_009785.1 1474818 1475003 D hypothetical protein 1474818..1475003 Streptococcus gordonii str. Challis substr. CH1 5599378 YP_001450704.1 CDS paaI NC_009785.1 1475124 1475528 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; phenylacetic acid degradation protein paaI complement(1475124..1475528) Streptococcus gordonii str. Challis substr. CH1 5598562 YP_001450705.1 CDS SGO_1425 NC_009785.1 1475628 1476218 R hypothetical protein complement(1475628..1476218) Streptococcus gordonii str. Challis substr. CH1 5597753 YP_001450706.1 CDS eno NC_009785.1 1476299 1477603 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1476299..1477603) Streptococcus gordonii str. Challis substr. CH1 5597897 YP_001450707.1 CDS SGO_1427 NC_009785.1 1477758 1478258 D identified by match to protein family HMM PF07997; hypothetical protein 1477758..1478258 Streptococcus gordonii str. Challis substr. CH1 5597817 YP_001450708.1 CDS SGO_1428 NC_009785.1 1478260 1478598 D hypothetical protein 1478260..1478598 Streptococcus gordonii str. Challis substr. CH1 5599006 YP_001450709.1 CDS SGO_1429 NC_009785.1 1478595 1479713 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(1478595..1479713) Streptococcus gordonii str. Challis substr. CH1 5598716 YP_001450710.1 CDS serB NC_009785.1 1479723 1480370 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB complement(1479723..1480370) Streptococcus gordonii str. Challis substr. CH1 5598134 YP_001450711.1 CDS ezrA NC_009785.1 1480664 1482388 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1480664..1482388) Streptococcus gordonii str. Challis substr. CH1 5598524 YP_001450712.1 CDS gyrB NC_009785.1 1482474 1484423 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(1482474..1484423) Streptococcus gordonii str. Challis substr. CH1 5599858 YP_001450713.1 CDS SGO_1433 NC_009785.1 1484425 1485003 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(1484425..1485003) Streptococcus gordonii str. Challis substr. CH1 5597742 YP_001450714.1 CDS thiJ NC_009785.1 1485156 1485704 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein complement(1485156..1485704) Streptococcus gordonii str. Challis substr. CH1 5598531 YP_001450715.1 CDS mreB NC_009785.1 1485718 1486950 R identified by match to protein family HMM PF01098; cell shape determining protein complement(1485718..1486950) Streptococcus gordonii str. Challis substr. CH1 5599037 YP_001450716.1 CDS SGO_1436 NC_009785.1 1486963 1487940 R identified by match to protein family HMM PF03601; membrane protein complement(1486963..1487940) Streptococcus gordonii str. Challis substr. CH1 5599395 YP_001450717.1 CDS SGO_1437 NC_009785.1 1488053 1490527 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DnaQ family exonuclease/DinG family helicase complement(1488053..1490527) Streptococcus gordonii str. Challis substr. CH1 5598579 YP_001450718.1 CDS SGO_1438 NC_009785.1 1490712 1491347 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 4 1490712..1491347 Streptococcus gordonii str. Challis substr. CH1 5598808 YP_001450719.1 CDS ftsX NC_009785.1 1491389 1492315 R identified by match to protein family HMM PF02687; cell division protein FtsX complement(1491389..1492315) Streptococcus gordonii str. Challis substr. CH1 5598357 YP_001450720.1 CDS SGO_1440 NC_009785.1 1492308 1493000 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell-division ATP-binding protein FtsE complement(1492308..1493000) Streptococcus gordonii str. Challis substr. CH1 5598380 YP_001450721.1 CDS prfB NC_009785.1 1493023 1494118 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(join(1493023..1494045,1494047..1494118)) Streptococcus gordonii str. Challis substr. CH1 5599342 YP_001450722.1 CDS SGO_1442 NC_009785.1 1494413 1495276 D identified by match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 1494413..1495276 Streptococcus gordonii str. Challis substr. CH1 5598487 YP_001450723.1 CDS SGO_1443 NC_009785.1 1495357 1496052 R identified by match to protein family HMM TIGR02206; hypothetical protein complement(1495357..1496052) Streptococcus gordonii str. Challis substr. CH1 5598239 YP_001450724.1 CDS SGO_1444 NC_009785.1 1496054 1496758 R identified by match to protein family HMM TIGR02206; hypothetical protein complement(1496054..1496758) Streptococcus gordonii str. Challis substr. CH1 5599575 YP_001450725.1 CDS murF NC_009785.1 1497210 1498580 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1497210..1498580) Streptococcus gordonii str. Challis substr. CH1 5599358 YP_001450726.1 CDS ddl NC_009785.1 1498656 1499702 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1498656..1499702) Streptococcus gordonii str. Challis substr. CH1 5598634 YP_001450727.1 CDS recR NC_009785.1 1499832 1500428 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1499832..1500428) Streptococcus gordonii str. Challis substr. CH1 5598694 YP_001450728.1 CDS pbp2b NC_009785.1 1500439 1502493 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2B complement(1500439..1502493) Streptococcus gordonii str. Challis substr. CH1 5598136 YP_001450729.1 CDS SGO_1450 NC_009785.1 1502670 1503524 R hypothetical protein complement(1502670..1503524) Streptococcus gordonii str. Challis substr. CH1 5598807 YP_001450730.1 CDS frr NC_009785.1 1503624 1504181 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1503624..1504181) Streptococcus gordonii str. Challis substr. CH1 5599823 YP_001450731.1 CDS pyrH NC_009785.1 1504203 1504928 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1504203..1504928) Streptococcus gordonii str. Challis substr. CH1 5599477 YP_001450732.1 CDS SGO_1453 NC_009785.1 1505119 1506426 R identified by match to protein family HMM PF01501; glycosyl transferase family protein complement(1505119..1506426) Streptococcus gordonii str. Challis substr. CH1 5598246 YP_001450733.1 CDS SGO_1454 NC_009785.1 1506593 1508059 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(1506593..1508059) Streptococcus gordonii str. Challis substr. CH1 5599670 YP_001450734.1 CDS rplA NC_009785.1 1508298 1508987 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1508298..1508987) Streptococcus gordonii str. Challis substr. CH1 5598975 YP_001450735.1 CDS rplK NC_009785.1 1509085 1509510 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1509085..1509510) Streptococcus gordonii str. Challis substr. CH1 5598788 YP_001450736.1 CDS SGO_1457 NC_009785.1 1509678 1510028 D hypothetical protein 1509678..1510028 Streptococcus gordonii str. Challis substr. CH1 5598532 YP_001450737.1 CDS aha1 NC_009785.1 1510057 1512399 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase yfgQ complement(1510057..1512399) Streptococcus gordonii str. Challis substr. CH1 5598240 YP_001450738.1 CDS SGO_1459 NC_009785.1 1512518 1512904 R identified by match to protein family HMM PF00903; glyoxylase complement(1512518..1512904) Streptococcus gordonii str. Challis substr. CH1 5598708 YP_001450739.1 CDS SGO_1460 NC_009785.1 1513016 1515316 R identified by match to protein family HMM PF01580; DNA translocase ftsK complement(1513016..1515316) Streptococcus gordonii str. Challis substr. CH1 5599728 YP_001450740.1 CDS SGO_1461 NC_009785.1 1515460 1515657 R identified by match to protein family HMM PF04024; putative stress-responsive transcriptional regulator PspC complement(1515460..1515657) Streptococcus gordonii str. Challis substr. CH1 5598053 YP_001450741.1 CDS SGO_1462 NC_009785.1 1515991 1516407 D identified by match to protein family HMM PF00293; NUDIX domain-containing protein 1515991..1516407 Streptococcus gordonii str. Challis substr. CH1 5597920 YP_001450742.1 CDS SGO_1463 NC_009785.1 1516454 1517257 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 1516454..1517257 Streptococcus gordonii str. Challis substr. CH1 5599031 YP_001450743.1 CDS SGO_1464 NC_009785.1 1517292 1517528 D hypothetical protein 1517292..1517528 Streptococcus gordonii str. Challis substr. CH1 5599516 YP_001450744.1 CDS SGO_1465 NC_009785.1 1517614 1519155 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1517614..1519155) Streptococcus gordonii str. Challis substr. CH1 5599127 YP_001450745.1 CDS SGO_1466 NC_009785.1 1519253 1519945 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1519253..1519945) Streptococcus gordonii str. Challis substr. CH1 5599349 YP_001450746.1 CDS SGO_1467 NC_009785.1 1519997 1520305 R hypothetical protein complement(1519997..1520305) Streptococcus gordonii str. Challis substr. CH1 5599159 YP_001450747.1 CDS SGO_1468 NC_009785.1 1520317 1520868 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1520317..1520868) Streptococcus gordonii str. Challis substr. CH1 5598811 YP_001450748.1 CDS glmU NC_009785.1 1520877 1522256 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(1520877..1522256) Streptococcus gordonii str. Challis substr. CH1 5598311 YP_001450749.1 CDS SGO_1470 NC_009785.1 1522343 1522792 R identified by match to protein family HMM PF06171; hypothetical protein complement(1522343..1522792) Streptococcus gordonii str. Challis substr. CH1 5598947 YP_001450750.1 CDS SGO_1471 NC_009785.1 1522843 1523190 R hypothetical protein complement(1522843..1523190) Streptococcus gordonii str. Challis substr. CH1 5598088 YP_001450751.1 CDS SGO_1472 NC_009785.1 1523187 1523930 R identified by match to protein family HMM PF00583; acetyltransferase complement(1523187..1523930) Streptococcus gordonii str. Challis substr. CH1 5598991 YP_001450752.1 CDS fabG NC_009785.1 1523951 1524649 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1523951..1524649) Streptococcus gordonii str. Challis substr. CH1 5599672 YP_001450753.1 CDS SGO_1474 NC_009785.1 1524642 1524878 R hypothetical protein complement(1524642..1524878) Streptococcus gordonii str. Challis substr. CH1 5599460 YP_001450754.1 CDS SGO_1475 NC_009785.1 1525013 1525978 R putative lipoprotein complement(1525013..1525978) Streptococcus gordonii str. Challis substr. CH1 5597784 YP_001450755.1 CDS SGO_1476 NC_009785.1 1526489 1527187 R hypothetical protein complement(1526489..1527187) Streptococcus gordonii str. Challis substr. CH1 5599054 YP_001450756.1 CDS SGO_1477 NC_009785.1 1527460 1528113 R hypothetical protein complement(1527460..1528113) Streptococcus gordonii str. Challis substr. CH1 5599763 YP_001450757.1 CDS SGO_1478 NC_009785.1 1528308 1529006 R hypothetical protein complement(1528308..1529006) Streptococcus gordonii str. Challis substr. CH1 5598179 YP_001450758.1 CDS SGO_1479 NC_009785.1 1529113 1529772 R hypothetical protein complement(1529113..1529772) Streptococcus gordonii str. Challis substr. CH1 5599710 YP_001450759.1 CDS SGO_1480 NC_009785.1 1529856 1530311 R ribosomal-protein-alanine acetyltransferase complement(1529856..1530311) Streptococcus gordonii str. Challis substr. CH1 5597940 YP_001450760.1 CDS SGO_1481 NC_009785.1 1530330 1530755 R identified by match to protein family HMM PF00583; acetyltransferase complement(1530330..1530755) Streptococcus gordonii str. Challis substr. CH1 5599803 YP_001450761.1 CDS SGO_1482 NC_009785.1 1530955 1532352 R identified by match to protein family HMM PF00324; amino acid permease complement(1530955..1532352) Streptococcus gordonii str. Challis substr. CH1 5599237 YP_001450762.1 CDS SGO_1483 NC_009785.1 1532473 1534461 R putative protein SP0913; identified by match to protein family HMM PF02687; putative permease complement(1532473..1534461) Streptococcus gordonii str. Challis substr. CH1 5597924 YP_001450763.1 CDS SGO_1484 NC_009785.1 1534454 1535221 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1534454..1535221) Streptococcus gordonii str. Challis substr. CH1 5599141 YP_001450764.1 CDS SGO_1485 NC_009785.1 1535537 1535668 R hypothetical protein complement(1535537..1535668) Streptococcus gordonii str. Challis substr. CH1 5599556 YP_001450765.1 CDS SGO_1486 NC_009785.1 1535957 1543009 R identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; beta-galactosidase complement(1535957..1543009) Streptococcus gordonii str. Challis substr. CH1 5599525 YP_001450766.1 CDS SGO_1487 NC_009785.1 1543282 1548594 R identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; LPXTG cell wall surface protein complement(1543282..1548594) Streptococcus gordonii str. Challis substr. CH1 5598979 YP_001450767.1 CDS SGO_1488 NC_009785.1 1548924 1549664 R identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase complement(1548924..1549664) Streptococcus gordonii str. Challis substr. CH1 5598058 YP_001450768.1 CDS SGO_1489 NC_009785.1 1549773 1550036 R putative lipoprotein complement(1549773..1550036) Streptococcus gordonii str. Challis substr. CH1 5598047 YP_001450769.1 CDS SGO_1490 NC_009785.1 1550070 1550417 R identified by match to protein family HMM PF07972; NrdI protein complement(1550070..1550417) Streptococcus gordonii str. Challis substr. CH1 5599655 YP_001450770.1 CDS SGO_1491 NC_009785.1 1550427 1550750 R hypothetical protein complement(1550427..1550750) Streptococcus gordonii str. Challis substr. CH1 5599251 YP_001450771.1 CDS SGO_1492 NC_009785.1 1550973 1551539 R identified by match to protein family HMM PF00440; TetR/AcrR family transcriptional regulator complement(1550973..1551539) Streptococcus gordonii str. Challis substr. CH1 5598616 YP_001450772.1 CDS SGO_1493 NC_009785.1 1551688 1552638 D hypothetical protein 1551688..1552638 Streptococcus gordonii str. Challis substr. CH1 5598345 YP_001450773.1 CDS SGO_1494 NC_009785.1 1552756 1553172 R hypothetical protein complement(1552756..1553172) Streptococcus gordonii str. Challis substr. CH1 5597923 YP_001450774.1 CDS SGO_1495 NC_009785.1 1553183 1553584 R identified by match to protein family HMM PF04397; putative transcriptional regulator complement(1553183..1553584) Streptococcus gordonii str. Challis substr. CH1 5599692 YP_001450775.1 CDS SGO_1496 NC_009785.1 1553661 1554506 R identified by match to protein family HMM PF01061; putative integral membrane transport protein complement(1553661..1554506) Streptococcus gordonii str. Challis substr. CH1 5599013 YP_001450776.1 CDS SGO_1497 NC_009785.1 1554508 1555374 R identified by match to protein family HMM PF00005; ABC transporter ATPase complement(1554508..1555374) Streptococcus gordonii str. Challis substr. CH1 5599015 YP_001450777.1 CDS SGO_1498 NC_009785.1 1555525 1557516 R putative protein SP0913; putative permease complement(1555525..1557516) Streptococcus gordonii str. Challis substr. CH1 5598112 YP_001450778.1 CDS SGO_1499 NC_009785.1 1557497 1558276 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1557497..1558276) Streptococcus gordonii str. Challis substr. CH1 5599597 YP_001450779.1 CDS SGO_1500 NC_009785.1 1558287 1558415 R hypothetical protein complement(1558287..1558415) Streptococcus gordonii str. Challis substr. CH1 5598860 YP_001450780.1 CDS SGO_1501 NC_009785.1 1558531 1559289 R hypothetical protein complement(1558531..1559289) Streptococcus gordonii str. Challis substr. CH1 5599482 YP_001450781.1 CDS SGO_1502 NC_009785.1 1559487 1560131 R hypothetical protein complement(1559487..1560131) Streptococcus gordonii str. Challis substr. CH1 5598668 YP_001450782.1 CDS SGO_1503 NC_009785.1 1560156 1560713 R hypothetical protein complement(1560156..1560713) Streptococcus gordonii str. Challis substr. CH1 5599624 YP_001450783.1 CDS SGO_1504 NC_009785.1 1560759 1561739 R identified by match to protein family HMM PF02518; histidine kinase complement(1560759..1561739) Streptococcus gordonii str. Challis substr. CH1 5597847 YP_001450784.1 CDS SGO_1505 NC_009785.1 1561723 1562409 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator Rr1 complement(1561723..1562409) Streptococcus gordonii str. Challis substr. CH1 5597899 YP_001450785.1 CDS SGO_1506 NC_009785.1 1562619 1563878 D hypothetical protein 1562619..1563878 Streptococcus gordonii str. Challis substr. CH1 5598313 YP_001450786.1 CDS SGO_1507 NC_009785.1 1564002 1565186 D hypothetical protein 1564002..1565186 Streptococcus gordonii str. Challis substr. CH1 5597922 YP_001450787.1 CDS SGO_1508 NC_009785.1 1565212 1565331 R hypothetical protein complement(1565212..1565331) Streptococcus gordonii str. Challis substr. CH1 5598511 YP_001450788.1 CDS SGO_1509 NC_009785.1 1565489 1566685 D identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794; match to protein family HMM PF08022; oxidoreductase NAD-binding subunit 1565489..1566685 Streptococcus gordonii str. Challis substr. CH1 5598477 YP_001450789.1 CDS SGO_1510 NC_009785.1 1567112 1568014 R identified by match to protein family HMM PF01263; aldolase 1 epimerase LacX complement(1567112..1568014) Streptococcus gordonii str. Challis substr. CH1 5598848 YP_001450790.1 CDS SGO_1511 NC_009785.1 1568034 1568315 R hypothetical protein complement(1568034..1568315) Streptococcus gordonii str. Challis substr. CH1 5598474 YP_001450791.1 CDS lacG NC_009785.1 1568369 1569775 R catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase complement(1568369..1569775) Streptococcus gordonii str. Challis substr. CH1 5598019 YP_001450792.1 CDS lacE NC_009785.1 1569870 1571576 R identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system lactose-specific transporter subunit IIBC complement(1569870..1571576) Streptococcus gordonii str. Challis substr. CH1 5598406 YP_001450793.1 CDS lacF NC_009785.1 1571576 1571893 R identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system lactose-specific transporter subunit IIA complement(1571576..1571893) Streptococcus gordonii str. Challis substr. CH1 5599588 YP_001450794.1 CDS SGO_1515 NC_009785.1 1571940 1572773 R identified by match to protein family HMM PF00874; match to protein family HMM PF03123; antiterminator protein complement(1571940..1572773) Streptococcus gordonii str. Challis substr. CH1 5598990 YP_001450795.1 CDS lacD-2 NC_009785.1 1572970 1573950 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(1572970..1573950) Streptococcus gordonii str. Challis substr. CH1 5597911 YP_001450796.1 CDS lacC NC_009785.1 1573954 1574883 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(1573954..1574883) Streptococcus gordonii str. Challis substr. CH1 5598168 YP_001450797.1 CDS lacB-2 NC_009785.1 1574896 1575411 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(1574896..1575411) Streptococcus gordonii str. Challis substr. CH1 5599758 YP_001450798.1 CDS lacA-1 NC_009785.1 1575428 1575853 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(1575428..1575853) Streptococcus gordonii str. Challis substr. CH1 5598056 YP_001450799.1 CDS SGO_1520 NC_009785.1 1576456 1577934 R identified by match to protein family HMM PF03611; PTS system transporter subunit IIC complement(1576456..1577934) Streptococcus gordonii str. Challis substr. CH1 5599238 YP_001450800.1 CDS SGO_1521 NC_009785.1 1578030 1578335 R PTS system galactitol/fructose specific transporter subunit IIB complement(1578030..1578335) Streptococcus gordonii str. Challis substr. CH1 5598286 YP_001450801.1 CDS SGO_1522 NC_009785.1 1578373 1578849 R identified by match to protein family HMM PF00359; PTS system galactitol/fructose specific transporter subunit IIBC complement(1578373..1578849) Streptococcus gordonii str. Challis substr. CH1 5599694 YP_001450802.1 CDS lacD-1 NC_009785.1 1578982 1579953 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(1578982..1579953) Streptococcus gordonii str. Challis substr. CH1 5598032 YP_001450803.1 CDS lacC-2 NC_009785.1 1579955 1580884 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(1579955..1580884) Streptococcus gordonii str. Challis substr. CH1 5598600 YP_001450804.1 CDS lacB-1 NC_009785.1 1580895 1581410 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(1580895..1581410) Streptococcus gordonii str. Challis substr. CH1 5599618 YP_001450805.1 CDS lacA-2 NC_009785.1 1581427 1581852 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(1581427..1581852) Streptococcus gordonii str. Challis substr. CH1 5598649 YP_001450806.1 CDS SGO_1527 NC_009785.1 1582053 1582808 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; lactose phosphotransferase system repressor complement(1582053..1582808) Streptococcus gordonii str. Challis substr. CH1 5597820 YP_001450807.1 CDS SGO_1528 NC_009785.1 1582748 1582867 R hypothetical protein complement(1582748..1582867) Streptococcus gordonii str. Challis substr. CH1 5598837 YP_001450808.1 CDS SGO_1529 NC_009785.1 1582954 1583811 R hypothetical protein complement(1582954..1583811) Streptococcus gordonii str. Challis substr. CH1 5597993 YP_001450809.1 CDS SGO_1530 NC_009785.1 1584004 1586004 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1584004..1586004) Streptococcus gordonii str. Challis substr. CH1 5599144 YP_001450810.1 CDS xth NC_009785.1 1586546 1587373 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1586546..1587373 Streptococcus gordonii str. Challis substr. CH1 5599755 YP_001450811.1 CDS SGO_1532 NC_009785.1 1587385 1587771 D identified by match to protein family HMM PF00903; glyoxalase 1587385..1587771 Streptococcus gordonii str. Challis substr. CH1 5599443 YP_001450812.1 CDS nth NC_009785.1 1587799 1588428 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1587799..1588428) Streptococcus gordonii str. Challis substr. CH1 5599218 YP_001450813.1 CDS SGO_1534 NC_009785.1 1588523 1588876 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; ArsC family transcription regulator complement(1588523..1588876) Streptococcus gordonii str. Challis substr. CH1 5598981 YP_001450814.1 CDS ogt NC_009785.1 1588886 1589383 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase complement(1588886..1589383) Streptococcus gordonii str. Challis substr. CH1 5599283 YP_001450815.1 CDS SGO_1536 NC_009785.1 1589431 1590285 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein complement(1589431..1590285) Streptococcus gordonii str. Challis substr. CH1 5598549 YP_001450816.1 CDS SGO_1537 NC_009785.1 1590288 1590611 R in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA complement(1590288..1590611) Streptococcus gordonii str. Challis substr. CH1 5599304 YP_001450817.1 CDS SGO_1538 NC_009785.1 1590626 1591525 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.; DNA polymerase III subunit delta' complement(1590626..1591525) Streptococcus gordonii str. Challis substr. CH1 5599383 YP_001450818.1 CDS tmk NC_009785.1 1591522 1592160 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1591522..1592160) Streptococcus gordonii str. Challis substr. CH1 5598087 YP_001450819.1 CDS SGO_1540 NC_009785.1 1592414 1593277 D identified by match to protein family HMM PF02588; YitT family protein 1592414..1593277 Streptococcus gordonii str. Challis substr. CH1 5598963 YP_001450820.1 CDS atpC NC_009785.1 1593321 1593737 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1593321..1593737) Streptococcus gordonii str. Challis substr. CH1 5598077 YP_001450821.1 CDS atpD NC_009785.1 1593748 1595154 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1593748..1595154) Streptococcus gordonii str. Challis substr. CH1 5598792 YP_001450822.1 CDS atpG NC_009785.1 1595192 1596073 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1595192..1596073) Streptococcus gordonii str. Challis substr. CH1 5598003 YP_001450823.1 CDS atpA NC_009785.1 1596089 1597594 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1596089..1597594) Streptococcus gordonii str. Challis substr. CH1 5598046 YP_001450824.1 CDS atpH NC_009785.1 1597609 1598145 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1597609..1598145) Streptococcus gordonii str. Challis substr. CH1 5598444 YP_001450825.1 CDS atpF NC_009785.1 1598145 1598639 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(1598145..1598639) Streptococcus gordonii str. Challis substr. CH1 5598740 YP_001450826.1 CDS atpB NC_009785.1 1598659 1599372 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1598659..1599372) Streptococcus gordonii str. Challis substr. CH1 5598589 YP_001450827.1 CDS atpE NC_009785.1 1599408 1599608 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1599408..1599608) Streptococcus gordonii str. Challis substr. CH1 5599293 YP_001450828.1 CDS SGO_1549 NC_009785.1 1599915 1600415 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1599915..1600415) Streptococcus gordonii str. Challis substr. CH1 5599521 YP_001450829.1 CDS glgP-1 NC_009785.1 1600568 1602964 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(1600568..1602964) Streptococcus gordonii str. Challis substr. CH1 5598048 YP_001450830.1 CDS glgA NC_009785.1 1603179 1604609 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(1603179..1604609) Streptococcus gordonii str. Challis substr. CH1 5598897 YP_001450831.1 CDS glgD NC_009785.1 1604606 1605802 R identified by match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit complement(1604606..1605802) Streptococcus gordonii str. Challis substr. CH1 5598150 YP_001450832.1 CDS glgC NC_009785.1 1605735 1606877 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(1605735..1606877) Streptococcus gordonii str. Challis substr. CH1 5598880 YP_001450833.1 CDS glgB NC_009785.1 1607062 1608963 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1607062..1608963) Streptococcus gordonii str. Challis substr. CH1 5599664 YP_001450834.1 CDS ptsI NC_009785.1 1609221 1610954 R identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(1609221..1610954) Streptococcus gordonii str. Challis substr. CH1 5599647 YP_001450835.1 CDS SGO_1556 NC_009785.1 1610956 1611219 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(1610956..1611219) Streptococcus gordonii str. Challis substr. CH1 5598438 YP_001450836.1 CDS SGO_1557 NC_009785.1 1611666 1611884 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; NrdH-redoxin 1611666..1611884 Streptococcus gordonii str. Challis substr. CH1 5599529 YP_001450837.1 CDS nrdE NC_009785.1 1611969 1614128 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1611969..1614128 Streptococcus gordonii str. Challis substr. CH1 5597833 YP_001450838.1 CDS nrdF NC_009785.1 1614297 1615256 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1614297..1615256 Streptococcus gordonii str. Challis substr. CH1 5598089 YP_001450839.1 CDS SGO_1560 NC_009785.1 1615354 1616022 R identified by match to protein family HMM PF02517; CAAX amino protease complement(1615354..1616022) Streptococcus gordonii str. Challis substr. CH1 5598013 YP_001450840.1 CDS SGO_1561 NC_009785.1 1616027 1616560 R putative zinc metallopeptidase complement(1616027..1616560) Streptococcus gordonii str. Challis substr. CH1 5599490 YP_001450841.1 CDS SGO_1562 NC_009785.1 1616579 1617319 R hypothetical protein complement(1616579..1617319) Streptococcus gordonii str. Challis substr. CH1 5598785 YP_001450842.1 CDS SGO_1563 NC_009785.1 1617439 1617558 R hypothetical protein complement(1617439..1617558) Streptococcus gordonii str. Challis substr. CH1 5599784 YP_001450843.1 CDS SGO_1564 NC_009785.1 1617555 1617758 R identified by match to protein family HMM PF01381; transcription regulator, -like protein complement(1617555..1617758) Streptococcus gordonii str. Challis substr. CH1 5599767 YP_001450844.1 CDS argD NC_009785.1 1618239 1619381 R identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase complement(1618239..1619381) Streptococcus gordonii str. Challis substr. CH1 5597895 YP_001450845.1 CDS argB NC_009785.1 1619384 1620121 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1619384..1620121) Streptococcus gordonii str. Challis substr. CH1 5599747 YP_001450846.1 CDS argJ NC_009785.1 1620133 1621326 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(1620133..1621326) Streptococcus gordonii str. Challis substr. CH1 5598467 YP_001450847.1 CDS argC NC_009785.1 1621344 1622366 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1621344..1622366) Streptococcus gordonii str. Challis substr. CH1 5598909 YP_001450848.1 CDS alaS NC_009785.1 1622703 1625321 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1622703..1625321) Streptococcus gordonii str. Challis substr. CH1 5598051 YP_001450849.1 CDS SGO_1571 NC_009785.1 1625356 1625841 R identified by match to protein family HMM PF04525; hypothetical protein complement(1625356..1625841) Streptococcus gordonii str. Challis substr. CH1 5598106 YP_001450850.1 CDS prsA NC_009785.1 1626070 1626999 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; foldase PrsA complement(1626070..1626999) Streptococcus gordonii str. Challis substr. CH1 5599162 YP_001450851.1 CDS SGO_1573 NC_009785.1 1627202 1627888 R identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; O-methyltransferase family protein complement(1627202..1627888) Streptococcus gordonii str. Challis substr. CH1 5597810 YP_001450852.1 CDS pepF-1 NC_009785.1 1627890 1629692 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(1627890..1629692) Streptococcus gordonii str. Challis substr. CH1 5599005 YP_001450853.1 CDS SGO_1575 NC_009785.1 1629852 1630805 R identified by match to protein family HMM PF06054; competence protein CoiA complement(1629852..1630805) Streptococcus gordonii str. Challis substr. CH1 5599819 YP_001450854.1 CDS celD NC_009785.1 1630898 1632253 R required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIC component complement(1630898..1632253) Streptococcus gordonii str. Challis substr. CH1 5599546 YP_001450855.1 CDS SGO_1577 NC_009785.1 1632274 1632759 R hypothetical protein complement(1632274..1632759) Streptococcus gordonii str. Challis substr. CH1 5598220 YP_001450856.1 CDS celC NC_009785.1 1632787 1633104 R required for cellobiose uptake and metabolism; cellobiose phosphotransferase system IIA component complement(1632787..1633104) Streptococcus gordonii str. Challis substr. CH1 5597785 YP_001450857.1 CDS SGO_1579 NC_009785.1 1633121 1635109 R identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; BigG family transcription antiterminator complement(1633121..1635109) Streptococcus gordonii str. Challis substr. CH1 5598578 YP_001450858.1 CDS celB NC_009785.1 1635161 1635475 R required for cellobiose uptake and metabolism; PTS system cellobiose transporter subunit IIB complement(1635161..1635475) Streptococcus gordonii str. Challis substr. CH1 5599596 YP_001450859.1 CDS SGO_1581 NC_009785.1 1635586 1635825 R identified by match to protein family HMM PF03083; MtN3/saliva family protein complement(1635586..1635825) Streptococcus gordonii str. Challis substr. CH1 5598142 YP_001450860.1 CDS celA NC_009785.1 1635917 1637350 R converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism; 6-phospho-beta-glucosidase complement(1635917..1637350) Streptococcus gordonii str. Challis substr. CH1 5599729 YP_001450861.1 CDS SGO_1583 NC_009785.1 1637551 1637916 D hypothetical protein 1637551..1637916 Streptococcus gordonii str. Challis substr. CH1 5599678 YP_001450862.1 CDS SGO_1584 NC_009785.1 1637961 1639133 R identified by match to protein family HMM PF01306; match to protein family HMM PF07690; anion symport for sucrose, putative complement(1637961..1639133) Streptococcus gordonii str. Challis substr. CH1 5599055 YP_001450863.1 CDS SGO_1585 NC_009785.1 1639233 1640615 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(1639233..1640615) Streptococcus gordonii str. Challis substr. CH1 5599594 YP_001450864.1 CDS nagB NC_009785.1 1640755 1641462 R identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502; glucosamine-6-phosphate isomerase complement(1640755..1641462) Streptococcus gordonii str. Challis substr. CH1 5598408 YP_001450865.1 CDS queA NC_009785.1 1641770 1642798 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1641770..1642798 Streptococcus gordonii str. Challis substr. CH1 5599790 YP_001450866.1 CDS arcR NC_009785.1 1642810 1643280 D identified by similarity to GB:AAN65260.1; match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor 1642810..1643280 Streptococcus gordonii str. Challis substr. CH1 5599220 YP_001450867.1 CDS arcT NC_009785.1 1643315 1644649 R identified by similarity to GB:AAN65259.1; match to protein family HMM PF01546; match to protein family HMM TIGR01887; hypothetical protein complement(1643315..1644649) Streptococcus gordonii str. Challis substr. CH1 5597858 YP_001450868.1 CDS arcD NC_009785.1 1644668 1646182 R identified by similarity to GB:AAN65258.1; match to protein family HMM PF03606; arginine-ornithine antiporter complement(1644668..1646182) Streptococcus gordonii str. Challis substr. CH1 5599386 YP_001450869.1 CDS arcC NC_009785.1 1646351 1647298 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1646351..1647298) Streptococcus gordonii str. Challis substr. CH1 5598534 YP_001450870.1 CDS arcB NC_009785.1 1647474 1648490 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(1647474..1648490) Streptococcus gordonii str. Challis substr. CH1 5598638 YP_001450871.1 CDS arcA NC_009785.1 1648541 1649770 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(1648541..1649770) Streptococcus gordonii str. Challis substr. CH1 5597735 YP_001450872.1 CDS SGO_1594 NC_009785.1 1650030 1650716 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/Fnr family protein complement(1650030..1650716) Streptococcus gordonii str. Challis substr. CH1 5598801 YP_001450873.1 CDS SGO_1595 NC_009785.1 1650793 1651290 R identified by match to protein family HMM PF07853; integral membrane protein complement(1650793..1651290) Streptococcus gordonii str. Challis substr. CH1 5597898 YP_001450874.1 CDS SGO_1596 NC_009785.1 1651277 1651558 R identified by match to protein family HMM PF01022; match to protein family HMM PF08279; transcriptional regulator complement(1651277..1651558) Streptococcus gordonii str. Challis substr. CH1 5597836 YP_001450875.1 CDS SGO_1597 NC_009785.1 1651536 1652324 R hypothetical protein complement(1651536..1652324) Streptococcus gordonii str. Challis substr. CH1 5599447 YP_001450876.1 CDS SGO_1598 NC_009785.1 1652529 1653602 R hypothetical protein complement(1652529..1653602) Streptococcus gordonii str. Challis substr. CH1 5598656 YP_001450877.1 CDS sodA NC_009785.1 1653714 1654319 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; manganese-dependent superoxide dismutase complement(1653714..1654319) Streptococcus gordonii str. Challis substr. CH1 5598379 YP_001450878.1 CDS holA NC_009785.1 1654392 1655429 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1654392..1655429) Streptococcus gordonii str. Challis substr. CH1 5599666 YP_001450879.1 CDS celB NC_009785.1 1655520 1657760 R identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein celB complement(1655520..1657760) Streptococcus gordonii str. Challis substr. CH1 5598328 YP_001450880.1 CDS celA NC_009785.1 1657744 1658409 R identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein CelA complement(1657744..1658409) Streptococcus gordonii str. Challis substr. CH1 5599303 YP_001450881.1 CDS SGO_1603 NC_009785.1 1658506 1659033 R hypothetical protein complement(1658506..1659033) Streptococcus gordonii str. Challis substr. CH1 5599869 YP_001450882.1 CDS SGO_1604 NC_009785.1 1659072 1659782 R identified by match to protein family HMM PF01553; acyltransferase family protein complement(1659072..1659782) Streptococcus gordonii str. Challis substr. CH1 5599561 YP_001450883.1 CDS SGO_1605 NC_009785.1 1659942 1662311 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; P-type ATPase, metal cation transport 1659942..1662311 Streptococcus gordonii str. Challis substr. CH1 5597779 YP_001450884.1 CDS SGO_1606 NC_009785.1 1662380 1663162 D identified by match to protein family HMM PF05175; DNA methyltransferase signature protein 1662380..1663162 Streptococcus gordonii str. Challis substr. CH1 5599117 YP_001450885.1 CDS SGO_1607 NC_009785.1 1663152 1663418 D identified by match to protein family HMM PF01541; GIY-YIG catalytic domain-containing protein 1663152..1663418 Streptococcus gordonii str. Challis substr. CH1 5598749 YP_001450886.1 CDS SGO_1609 NC_009785.1 1664489 1666060 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(1664489..1666060) Streptococcus gordonii str. Challis substr. CH1 5599764 YP_001450887.1 CDS SGO_1610 NC_009785.1 1666419 1666817 D hypothetical protein 1666419..1666817 Streptococcus gordonii str. Challis substr. CH1 5599017 YP_001450888.1 CDS icd NC_009785.1 1666849 1668048 R identified by match to protein family HMM PF00180; isocitrate dehydrogenase complement(1666849..1668048) Streptococcus gordonii str. Challis substr. CH1 5597958 YP_001450889.1 CDS citZ NC_009785.1 1668050 1669168 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1668050..1669168) Streptococcus gordonii str. Challis substr. CH1 5599324 YP_001450890.1 CDS acnA NC_009785.1 1669171 1671834 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1669171..1671834) Streptococcus gordonii str. Challis substr. CH1 5598107 YP_001450891.1 CDS SGO_1614 NC_009785.1 1672050 1672958 R identified by match to protein family HMM PF01544; magnesium/cobalt transporter CorA complement(1672050..1672958) Streptococcus gordonii str. Challis substr. CH1 5599451 YP_001450892.1 CDS SGO_1615 NC_009785.1 1673188 1673934 R identified by match to protein family HMM PF02517; CAAX amino protease complement(1673188..1673934) Streptococcus gordonii str. Challis substr. CH1 5598394 YP_001450893.1 CDS SGO_1616 NC_009785.1 1673966 1674214 R methyltransferase complement(1673966..1674214) Streptococcus gordonii str. Challis substr. CH1 5599258 YP_001450894.1 CDS prfC NC_009785.1 1674529 1676073 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(1674529..1676073) Streptococcus gordonii str. Challis substr. CH1 5598566 YP_001450895.1 CDS SGO_1618 NC_009785.1 1676192 1676302 R hypothetical protein complement(1676192..1676302) Streptococcus gordonii str. Challis substr. CH1 5599776 YP_001450896.1 CDS SGO_1619 NC_009785.1 1676623 1679319 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporter E1-E2 family ATPase complement(1676623..1679319) Streptococcus gordonii str. Challis substr. CH1 5599548 YP_001450897.1 CDS SGO_1620 NC_009785.1 1679540 1679926 R identified by match to protein family HMM PF09148; hypothetical protein complement(1679540..1679926) Streptococcus gordonii str. Challis substr. CH1 5598907 YP_001450898.1 CDS SGO_1621 NC_009785.1 1680031 1681332 D identified by match to protein family HMM PF01966; HD domain-containing protein 1680031..1681332 Streptococcus gordonii str. Challis substr. CH1 5599044 YP_001450899.1 CDS SGO_1622 NC_009785.1 1681334 1682143 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein 1681334..1682143 Streptococcus gordonii str. Challis substr. CH1 5598671 YP_001450900.1 CDS murM NC_009785.1 1682128 1683357 D identified by match to protein family HMM PF02388; MurM protein 1682128..1683357 Streptococcus gordonii str. Challis substr. CH1 5599102 YP_001450901.1 CDS murN NC_009785.1 1683372 1684607 D identified by match to protein family HMM PF02388; MurN protein 1683372..1684607 Streptococcus gordonii str. Challis substr. CH1 5598181 YP_001450902.1 CDS SGO_1625 NC_009785.1 1684670 1685326 R identified by match to protein family HMM PF00571; acetoin utilization putative/CBS domain-containing protein complement(1684670..1685326) Streptococcus gordonii str. Challis substr. CH1 5598969 YP_001450903.1 CDS SGO_1626 NC_009785.1 1685950 1686660 R identified by match to protein family HMM PF00005; branched-chain amino acid transport protein complement(1685950..1686660) Streptococcus gordonii str. Challis substr. CH1 5597883 YP_001450904.1 CDS SGO_1627 NC_009785.1 1686660 1687424 R identified by match to protein family HMM PF00005; ATP-binding protein; branched-chain amino acid transport protein complement(1686660..1687424) Streptococcus gordonii str. Challis substr. CH1 5598374 YP_001450905.1 CDS braE NC_009785.1 1687424 1688377 R identified by match to protein family HMM PF02653; branched-chain amino acid permease complement(1687424..1688377) Streptococcus gordonii str. Challis substr. CH1 5597816 YP_001450906.1 CDS livH NC_009785.1 1688381 1689250 R identified by match to protein family HMM PF02653; branched-chain amino acid permease complement(1688381..1689250) Streptococcus gordonii str. Challis substr. CH1 5598639 YP_001450907.1 CDS SGO_1630 NC_009785.1 1689409 1690575 R identified by match to protein family HMM PF01094; branched-chain amino acid transport protein complement(1689409..1690575) Streptococcus gordonii str. Challis substr. CH1 5598593 YP_001450908.1 CDS SGO_1631 NC_009785.1 1690665 1690934 R hypothetical protein complement(1690665..1690934) Streptococcus gordonii str. Challis substr. CH1 5598874 YP_001450909.1 CDS clpP NC_009785.1 1691012 1691602 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1691012..1691602) Streptococcus gordonii str. Challis substr. CH1 5599213 YP_001450910.1 CDS upp NC_009785.1 1691802 1692431 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1691802..1692431) Streptococcus gordonii str. Challis substr. CH1 5598998 YP_001450911.1 CDS SGO_1634 NC_009785.1 1692529 1695189 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase complement(1692529..1695189) Streptococcus gordonii str. Challis substr. CH1 5597778 YP_001450912.1 CDS SGO_1635 NC_009785.1 1695702 1696868 R identified by match to protein family HMM PF00155; L-cysteine desulfhydrase complement(1695702..1696868) Streptococcus gordonii str. Challis substr. CH1 5599610 YP_001450913.1 CDS SGO_1636 NC_009785.1 1696870 1697964 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(1696870..1697964) Streptococcus gordonii str. Challis substr. CH1 5597913 YP_001450914.1 CDS SGO_1637 NC_009785.1 1698116 1699747 R identified by match to protein family HMM PF01943; polysaccharide transporter complement(1698116..1699747) Streptococcus gordonii str. Challis substr. CH1 5598606 YP_001450915.1 CDS murE NC_009785.1 1699845 1701290 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1699845..1701290 Streptococcus gordonii str. Challis substr. CH1 5598250 YP_001450916.1 CDS SGO_1639 NC_009785.1 1701541 1702194 R identified by match to protein family HMM PF08820; hypothetical protein complement(1701541..1702194) Streptococcus gordonii str. Challis substr. CH1 5598177 YP_001450917.1 CDS SGO_1640 NC_009785.1 1702187 1702699 R identified by match to protein family HMM PF06520; hypothetical protein complement(1702187..1702699) Streptococcus gordonii str. Challis substr. CH1 5599245 YP_001450918.1 CDS SGO_1641 NC_009785.1 1703020 1704111 R identified by match to protein family HMM PF05913; hypothetical protein complement(1703020..1704111) Streptococcus gordonii str. Challis substr. CH1 5599119 YP_001450919.1 CDS SGO_1642 NC_009785.1 1704302 1704811 R hypothetical protein complement(1704302..1704811) Streptococcus gordonii str. Challis substr. CH1 5599242 YP_001450920.1 CDS SGO_1643 NC_009785.1 1704833 1706200 R identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system cellobiose-specific transporter subunit IIC complement(1704833..1706200) Streptococcus gordonii str. Challis substr. CH1 5598777 YP_001450921.1 CDS SGO_1644 NC_009785.1 1706230 1706550 R identified by match to protein family HMM PF02302; PTS system cellobiose-specific transporter subunit IIB complement(1706230..1706550) Streptococcus gordonii str. Challis substr. CH1 5597827 YP_001450922.1 CDS SGO_1645 NC_009785.1 1706563 1706886 R identified by match to protein family HMM PF02255; PTS cellobiose-specific enzyme IIA complement(1706563..1706886) Streptococcus gordonii str. Challis substr. CH1 5599658 YP_001450923.1 CDS SGO_1646 NC_009785.1 1706976 1707548 R identified by match to protein family HMM PF06271; hypothetical protein complement(1706976..1707548) Streptococcus gordonii str. Challis substr. CH1 5598373 YP_001450924.1 CDS SGO_1647 NC_009785.1 1707557 1709446 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; BigG family transcription antiterminator complement(1707557..1709446) Streptococcus gordonii str. Challis substr. CH1 5599157 YP_001450925.1 CDS ppx1 NC_009785.1 1709713 1710648 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(1709713..1710648) Streptococcus gordonii str. Challis substr. CH1 5598490 YP_001450926.1 CDS act NC_009785.1 1710784 1711593 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase-activating enzyme complement(1710784..1711593) Streptococcus gordonii str. Challis substr. CH1 5599138 YP_001450927.1 CDS SGO_1650 NC_009785.1 1711886 1713970 R identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; LPXTG cell wall surface protein complement(1711886..1713970) Streptococcus gordonii str. Challis substr. CH1 5599816 YP_001450928.1 CDS SGO_1651 NC_009785.1 1714343 1716682 R identified by match to protein family HMM PF03372; LPXTG cell wall surface protein complement(1714343..1716682) Streptococcus gordonii str. Challis substr. CH1 5598635 YP_001450929.1 CDS SGO_1652 NC_009785.1 1716882 1718507 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; intracellular glycosyl hydrolase complement(1716882..1718507) Streptococcus gordonii str. Challis substr. CH1 5597763 YP_001450930.1 CDS SGO_1653 NC_009785.1 1718643 1720652 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992; trehalose PTS enzyme II complement(1718643..1720652) Streptococcus gordonii str. Challis substr. CH1 5597741 YP_001450931.1 CDS SGO_1654 NC_009785.1 1720832 1721542 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon transcription repressor 1720832..1721542 Streptococcus gordonii str. Challis substr. CH1 5599498 YP_001450932.1 CDS SGO_1655 NC_009785.1 1721909 1723249 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin complement(1721909..1723249) Streptococcus gordonii str. Challis substr. CH1 5598619 YP_001450933.1 CDS SGO_1656 NC_009785.1 1723341 1724987 R phosphoenolpyruvate carboxykinase complement(1723341..1724987) Streptococcus gordonii str. Challis substr. CH1 5599391 YP_001450934.1 CDS SGO_1657 NC_009785.1 1725087 1726211 R identified by match to protein family HMM PF01594; membrane protein complement(1725087..1726211) Streptococcus gordonii str. Challis substr. CH1 5598237 YP_001450935.1 CDS SGO_1658 NC_009785.1 1726268 1727080 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1726268..1727080 Streptococcus gordonii str. Challis substr. CH1 5598680 YP_001450936.1 CDS SGO_1659 NC_009785.1 1727077 1728639 D hypothetical protein 1727077..1728639 Streptococcus gordonii str. Challis substr. CH1 5597959 YP_001450937.1 CDS SGO_1660 NC_009785.1 1729388 1729942 R identified by match to protein family HMM PF06962; match to protein family HMM PF08241; methyltransferase complement(1729388..1729942) Streptococcus gordonii str. Challis substr. CH1 5598895 YP_001450938.1 CDS SGO_1661 NC_009785.1 1729936 1730874 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein complement(1729936..1730874) Streptococcus gordonii str. Challis substr. CH1 5597986 YP_001450939.1 CDS SGO_1662 NC_009785.1 1730943 1731251 R identified by match to protein family HMM PF01035; putative methylated-DNA methyltransferase complement(1730943..1731251) Streptococcus gordonii str. Challis substr. CH1 5598212 YP_001450940.1 CDS SGO_1663 NC_009785.1 1731347 1731997 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1731347..1731997) Streptococcus gordonii str. Challis substr. CH1 5599572 YP_001450941.1 CDS SGO_1664 NC_009785.1 1731987 1732544 R hypothetical protein complement(1731987..1732544) Streptococcus gordonii str. Challis substr. CH1 5598734 YP_001450942.1 CDS SGO_1665 NC_009785.1 1732882 1733388 R identified by match to protein family HMM PF00588; rRNA methylase complement(1732882..1733388) Streptococcus gordonii str. Challis substr. CH1 5598417 YP_001450943.1 CDS trkA NC_009785.1 1733570 1735099 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 1733570..1735099 Streptococcus gordonii str. Challis substr. CH1 5598528 YP_001450944.1 CDS trkH NC_009785.1 1735104 1736546 D identified by match to protein family HMM PF02386; Trk family potassium uptake protein 1735104..1736546 Streptococcus gordonii str. Challis substr. CH1 5599091 YP_001450945.1 CDS SGO_1668 NC_009785.1 1736919 1737173 R identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(1736919..1737173) Streptococcus gordonii str. Challis substr. CH1 5598598 YP_001450946.1 CDS SGO_1669 NC_009785.1 1737170 1737898 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1737170..1737898) Streptococcus gordonii str. Challis substr. CH1 5598779 YP_001450947.1 CDS scpB NC_009785.1 1737934 1738500 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(1737934..1738500) Streptococcus gordonii str. Challis substr. CH1 5598263 YP_001450948.1 CDS scpA NC_009785.1 1738503 1739204 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(1738503..1739204) Streptococcus gordonii str. Challis substr. CH1 5599201 YP_001450949.1 CDS xerD NC_009785.1 1739204 1739932 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(1739204..1739932) Streptococcus gordonii str. Challis substr. CH1 5598569 YP_001450950.1 CDS SGO_1673 NC_009785.1 1739929 1740390 R identified by match to protein family HMM PF00571; hypothetical protein complement(1739929..1740390) Streptococcus gordonii str. Challis substr. CH1 5597878 YP_001450951.1 CDS SGO_1674 NC_009785.1 1740387 1740908 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(1740387..1740908) Streptococcus gordonii str. Challis substr. CH1 5598787 YP_001450952.1 CDS SGO_1675 NC_009785.1 1740884 1741861 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein complement(1740884..1741861) Streptococcus gordonii str. Challis substr. CH1 5598004 YP_001450953.1 CDS murI NC_009785.1 1741858 1742652 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1741858..1742652) Streptococcus gordonii str. Challis substr. CH1 5599397 YP_001450954.1 CDS SGO_1677 NC_009785.1 1742724 1742972 R identified by match to protein family HMM PF03672; hypothetical protein complement(1742724..1742972) Streptococcus gordonii str. Challis substr. CH1 5599567 YP_001450955.1 CDS lysA NC_009785.1 1743027 1744277 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(1743027..1744277) Streptococcus gordonii str. Challis substr. CH1 5598648 YP_001450956.1 CDS SGO_1679 NC_009785.1 1744606 1745595 D identified by match to protein family HMM PF03610; match to protein family HMM PF03830; phosphotransferase system enzyme II 1744606..1745595 Streptococcus gordonii str. Challis substr. CH1 5598957 YP_001450957.1 CDS SGO_1680 NC_009785.1 1745714 1746517 D identified by match to protein family HMM PF03609; phosphotransferase system enzyme II 1745714..1746517 Streptococcus gordonii str. Challis substr. CH1 5598072 YP_001450958.1 CDS SGO_1681 NC_009785.1 1746535 1747446 D identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system mannose/fructose/sorbose family transporter subunit IID 1746535..1747446 Streptococcus gordonii str. Challis substr. CH1 5599467 YP_001450959.1 CDS SGO_1682 NC_009785.1 1747518 1747892 D identified by match to protein family HMM PF06115; hypothetical protein 1747518..1747892 Streptococcus gordonii str. Challis substr. CH1 5597775 YP_001450960.1 CDS serS NC_009785.1 1748104 1749381 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1748104..1749381 Streptococcus gordonii str. Challis substr. CH1 5599821 YP_001450961.1 CDS SGO_1684 NC_009785.1 1749863 1750927 R acyl-CoA dehydrogenase complement(1749863..1750927) Streptococcus gordonii str. Challis substr. CH1 5598133 YP_001450962.1 CDS SGO_1685 NC_009785.1 1750946 1751494 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; putative peroxidase / antioxidase complement(1750946..1751494) Streptococcus gordonii str. Challis substr. CH1 5598460 YP_001450963.1 CDS SGO_1686 NC_009785.1 1751739 1752395 R hypothetical protein complement(1751739..1752395) Streptococcus gordonii str. Challis substr. CH1 5599035 YP_001450964.1 CDS accA NC_009785.1 1752569 1753339 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus; acetyl-CoA carboxylase subunit alpha complement(1752569..1753339) Streptococcus gordonii str. Challis substr. CH1 5598175 YP_001450965.1 CDS accD NC_009785.1 1753336 1754199 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1753336..1754199) Streptococcus gordonii str. Challis substr. CH1 5598677 YP_001450966.1 CDS accC NC_009785.1 1754267 1755646 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1754267..1755646) Streptococcus gordonii str. Challis substr. CH1 5598702 YP_001450967.1 CDS fabZ NC_009785.1 1755664 1756086 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1755664..1756086) Streptococcus gordonii str. Challis substr. CH1 5598157 YP_001450968.1 CDS accB NC_009785.1 1756083 1756571 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(1756083..1756571) Streptococcus gordonii str. Challis substr. CH1 5599824 YP_001450969.1 CDS SGO_1692 NC_009785.1 1756578 1757810 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(1756578..1757810) Streptococcus gordonii str. Challis substr. CH1 5598775 YP_001450970.1 CDS fabG NC_009785.1 1757900 1758634 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1757900..1758634) Streptococcus gordonii str. Challis substr. CH1 5598721 YP_001450971.1 CDS fabD NC_009785.1 1758644 1759564 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(1758644..1759564) Streptococcus gordonii str. Challis substr. CH1 5599222 YP_001450972.1 CDS SGO_1695 NC_009785.1 1759557 1760531 R identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; enoyl-acyl carrier protein(ACP) reductase complement(1759557..1760531) Streptococcus gordonii str. Challis substr. CH1 5599689 YP_001450973.1 CDS SGO_1696 NC_009785.1 1760239 1760835 D hypothetical protein 1760239..1760835 Streptococcus gordonii str. Challis substr. CH1 5599620 YP_001450974.1 CDS acpP NC_009785.1 1760821 1761045 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1760821..1761045) Streptococcus gordonii str. Challis substr. CH1 5599257 YP_001450975.1 CDS SGO_1698 NC_009785.1 1761101 1762075 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1761101..1762075) Streptococcus gordonii str. Challis substr. CH1 5598845 YP_001450976.1 CDS SGO_1699 NC_009785.1 1762075 1762437 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1762075..1762437) Streptococcus gordonii str. Challis substr. CH1 5599217 YP_001450977.1 CDS SGO_1700 NC_009785.1 1762648 1763439 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1762648..1763439) Streptococcus gordonii str. Challis substr. CH1 5597771 YP_001450978.1 CDS SGO_1701 NC_009785.1 1763691 1765061 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1763691..1765061 Streptococcus gordonii str. Challis substr. CH1 5599165 YP_001450979.1 CDS comR1 NC_009785.1 1770396 1770878 R competence specific sigma factor ComR1 complement(1770396..1770878) Streptococcus gordonii str. Challis substr. CH1 5599838 YP_001450980.1 CDS amiF NC_009785.1 1771080 1772003 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport ATP-binding protein amiF complement(1771080..1772003) Streptococcus gordonii str. Challis substr. CH1 5599547 YP_001450981.1 CDS amiE NC_009785.1 1772014 1773081 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein complement(1772014..1773081) Streptococcus gordonii str. Challis substr. CH1 5598287 YP_001450982.1 CDS amiD NC_009785.1 1773090 1774016 R identified by match to protein family HMM PF00528; oligopeptide transport system permease complement(1773090..1774016) Streptococcus gordonii str. Challis substr. CH1 5598920 YP_001450983.1 CDS hppB NC_009785.1 1774016 1775512 R identified by match to protein family HMM PF00528; oligopeptide transport system permease complement(1774016..1775512) Streptococcus gordonii str. Challis substr. CH1 5598076 YP_001450984.1 CDS hppA NC_009785.1 1775577 1777568 R identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein complement(1775577..1777568) Streptococcus gordonii str. Challis substr. CH1 5597917 YP_001450985.1 CDS hppG NC_009785.1 1777848 1779830 R identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein complement(1777848..1779830) Streptococcus gordonii str. Challis substr. CH1 5598383 YP_001450986.1 CDS SGO_1714 NC_009785.1 1779733 1779852 D hypothetical protein 1779733..1779852 Streptococcus gordonii str. Challis substr. CH1 5599098 YP_001450987.1 CDS hppH NC_009785.1 1780081 1782039 R identified by match to protein family HMM PF00496; oligopeptide-binding lipoprotein complement(1780081..1782039) Streptococcus gordonii str. Challis substr. CH1 5598873 YP_001450988.1 CDS SGO_1716 NC_009785.1 1782256 1784217 R identified by match to protein family HMM PF00496; oligopeptide binding protein complement(1782256..1784217) Streptococcus gordonii str. Challis substr. CH1 5598508 YP_001450989.1 CDS pbp3 NC_009785.1 1784507 1785745 D identified by match to protein family HMM PF00768; match to protein family HMM PF07943; penicillin-binding protein 3 1784507..1785745 Streptococcus gordonii str. Challis substr. CH1 5597907 YP_001450990.1 CDS sufB-1 NC_009785.1 1785953 1787365 R identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB complement(1785953..1787365) Streptococcus gordonii str. Challis substr. CH1 5599723 YP_001450991.1 CDS SGO_1719 NC_009785.1 1787383 1787820 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein complement(1787383..1787820) Streptococcus gordonii str. Challis substr. CH1 5598071 YP_001450992.1 CDS SGO_1720 NC_009785.1 1787807 1789039 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; class-V aminotransferase complement(1787807..1789039) Streptococcus gordonii str. Challis substr. CH1 5598288 YP_001450993.1 CDS sufD NC_009785.1 1789079 1790341 R identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD complement(1789079..1790341) Streptococcus gordonii str. Challis substr. CH1 5598326 YP_001450994.1 CDS sufC NC_009785.1 1790383 1791153 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC complement(1790383..1791153) Streptococcus gordonii str. Challis substr. CH1 5599351 YP_001450995.1 CDS SGO_1723 NC_009785.1 1791240 1792400 R identified by match to protein family HMM PF00953; RgpG complement(1791240..1792400) Streptococcus gordonii str. Challis substr. CH1 5598315 YP_001450996.1 CDS mecA NC_009785.1 1792400 1793128 R enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein complement(1792400..1793128) Streptococcus gordonii str. Challis substr. CH1 5599724 YP_001450997.1 CDS bacA NC_009785.1 1793250 1794098 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(1793250..1794098) Streptococcus gordonii str. Challis substr. CH1 5598405 YP_001450998.1 CDS SGO_1726 NC_009785.1 1794187 1796106 R hypothetical protein complement(1794187..1796106) Streptococcus gordonii str. Challis substr. CH1 5598480 YP_001450999.1 CDS SGO_1727 NC_009785.1 1796391 1797956 D identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid-binding permease 1796391..1797956 Streptococcus gordonii str. Challis substr. CH1 5598073 YP_001451000.1 CDS glnQ NC_009785.1 1797953 1798693 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; glutamine ABC transporter ATP-binding protein 1797953..1798693 Streptococcus gordonii str. Challis substr. CH1 5599278 YP_001451001.1 CDS SGO_1729 NC_009785.1 1798975 1799193 R hypothetical protein complement(1798975..1799193) Streptococcus gordonii str. Challis substr. CH1 5598063 YP_001451002.1 CDS SGO_1730 NC_009785.1 1799309 1800196 R identified by match to protein family HMM PF01145; hypothetical protein complement(1799309..1800196) Streptococcus gordonii str. Challis substr. CH1 5599269 YP_001451003.1 CDS SGO_1731 NC_009785.1 1800542 1801141 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; DNA-binding response regulator complement(1800542..1801141) Streptococcus gordonii str. Challis substr. CH1 5599181 YP_001451004.1 CDS SGO_1732 NC_009785.1 1801138 1802238 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase complement(1801138..1802238) Streptococcus gordonii str. Challis substr. CH1 5597910 YP_001451005.1 CDS SGO_1733 NC_009785.1 1802243 1802977 R identified by match to protein family HMM PF01061; hypothetical protein complement(1802243..1802977) Streptococcus gordonii str. Challis substr. CH1 5599867 YP_001451006.1 CDS SGO_1734 NC_009785.1 1802988 1803863 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1802988..1803863) Streptococcus gordonii str. Challis substr. CH1 5598081 YP_001451007.1 CDS SGO_1735 NC_009785.1 1804106 1805770 R identified by match to protein family HMM PF02734; hypothetical protein complement(1804106..1805770) Streptococcus gordonii str. Challis substr. CH1 5598124 YP_001451008.1 CDS SGO_1736 NC_009785.1 1805773 1806138 R identified by match to protein family HMM PF03780; alkaline shock protein complement(1805773..1806138) Streptococcus gordonii str. Challis substr. CH1 5599627 YP_001451009.1 CDS rpmB NC_009785.1 1806313 1806501 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1806313..1806501) Streptococcus gordonii str. Challis substr. CH1 5599299 YP_001451010.1 CDS SGO_1738 NC_009785.1 1806628 1807296 R hypothetical protein complement(1806628..1807296) Streptococcus gordonii str. Challis substr. CH1 5598752 YP_001451011.1 CDS SGO_1739 NC_009785.1 1807302 1807748 R identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein complement(1807302..1807748) Streptococcus gordonii str. Challis substr. CH1 5598316 YP_001451012.1 CDS SGO_1740 NC_009785.1 1808021 1808284 D integral membrane protein 1808021..1808284 Streptococcus gordonii str. Challis substr. CH1 5597750 YP_001451013.1 CDS SGO_1742 NC_009785.1 1808514 1809299 R identified by match to protein family HMM PF06182; hypothetical protein complement(1808514..1809299) Streptococcus gordonii str. Challis substr. CH1 5599530 YP_001451014.1 CDS SGO_1743 NC_009785.1 1809301 1810119 R identified by match to protein family HMM PF06182; membrane protein complement(1809301..1810119) Streptococcus gordonii str. Challis substr. CH1 5599305 YP_001451015.1 CDS SGO_1744 NC_009785.1 1810121 1811113 R identified by match to protein family HMM PF00005; ABC transporter; ATP-binding transport protein complement(1810121..1811113) Streptococcus gordonii str. Challis substr. CH1 5599361 YP_001451016.1 CDS fba NC_009785.1 1811399 1812280 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(1811399..1812280) Streptococcus gordonii str. Challis substr. CH1 5598747 YP_001451017.1 CDS SGO_1747 NC_009785.1 1812720 1813130 R hypothetical protein complement(1812720..1813130) Streptococcus gordonii str. Challis substr. CH1 5599216 YP_001451018.1 CDS pyrG NC_009785.1 1813200 1814813 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1813200..1814813) Streptococcus gordonii str. Challis substr. CH1 5598271 YP_001451019.1 CDS manA NC_009785.1 1815253 1816197 R identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase complement(1815253..1816197) Streptococcus gordonii str. Challis substr. CH1 5599298 YP_001451020.1 CDS SGO_1750 NC_009785.1 1816361 1818118 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC-type multidrug/protein/lipid transport system, ATPase component complement(1816361..1818118) Streptococcus gordonii str. Challis substr. CH1 5599493 YP_001451021.1 CDS SGO_1751 NC_009785.1 1818108 1819874 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC-type multidrug/protein/lipid transport system, ATPase component complement(1818108..1819874) Streptococcus gordonii str. Challis substr. CH1 5599411 YP_001451022.1 CDS SGO_1752 NC_009785.1 1819867 1820325 R MarR family transcriptional regulator complement(1819867..1820325) Streptococcus gordonii str. Challis substr. CH1 5598012 YP_001451023.1 CDS SGO_1753 NC_009785.1 1820597 1821166 R hypothetical protein complement(1820597..1821166) Streptococcus gordonii str. Challis substr. CH1 5598155 YP_001451024.1 CDS SGO_1754 NC_009785.1 1821176 1821586 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1821176..1821586) Streptococcus gordonii str. Challis substr. CH1 5598029 YP_001451025.1 CDS scrK NC_009785.1 1821635 1822534 R identified by match to protein family HMM PF00480; fructokinase complement(1821635..1822534) Streptococcus gordonii str. Challis substr. CH1 5599698 YP_001451026.1 CDS SGO_1756 NC_009785.1 1822775 1823299 R hypothetical protein complement(1822775..1823299) Streptococcus gordonii str. Challis substr. CH1 5598613 YP_001451027.1 CDS glmS NC_009785.1 1823564 1825375 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1823564..1825375) Streptococcus gordonii str. Challis substr. CH1 5598348 YP_001451028.1 CDS SGO_1758 NC_009785.1 1825700 1826623 R identified by match to protein family HMM PF01381; putative transcriptional regulator complement(1825700..1826623) Streptococcus gordonii str. Challis substr. CH1 5599004 YP_001451029.1 CDS SGO_1759 NC_009785.1 1826727 1828112 R identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase complement(1826727..1828112) Streptococcus gordonii str. Challis substr. CH1 5599064 YP_001451030.1 CDS SGO_1760 NC_009785.1 1828246 1829529 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; DNA-binding response regulator complement(1828246..1829529) Streptococcus gordonii str. Challis substr. CH1 5599578 YP_001451031.1 CDS SGO_1761 NC_009785.1 1829539 1831131 R identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; histidine kinase complement(1829539..1831131) Streptococcus gordonii str. Challis substr. CH1 5598686 YP_001451032.1 CDS SGO_1762 NC_009785.1 1831170 1831784 R identified by match to protein family HMM PF04854; hypothetical protein complement(1831170..1831784) Streptococcus gordonii str. Challis substr. CH1 5599178 YP_001451033.1 CDS SGO_1763 NC_009785.1 1831937 1833397 R identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein SP0092 complement(1831937..1833397) Streptococcus gordonii str. Challis substr. CH1 5598633 YP_001451034.1 CDS SGO_1764 NC_009785.1 1833509 1834444 R identified by match to protein family HMM PF00528; permease complement(1833509..1834444) Streptococcus gordonii str. Challis substr. CH1 5598992 YP_001451035.1 CDS SGO_1765 NC_009785.1 1834458 1835393 R identified by match to protein family HMM PF00528; ABC transporter sugar binding protein complement(1834458..1835393) Streptococcus gordonii str. Challis substr. CH1 5599562 YP_001451036.1 CDS SGO_1766 NC_009785.1 1835562 1837445 R identified by match to protein family HMM PF00728; glycosyl hydrolase family 20 protein complement(1835562..1837445) Streptococcus gordonii str. Challis substr. CH1 5598293 YP_001451037.1 CDS SGO_1767 NC_009785.1 1837430 1838308 R identified by match to protein family HMM PF00480; ROK family protein complement(1837430..1838308) Streptococcus gordonii str. Challis substr. CH1 5599121 YP_001451038.1 CDS SGO_1768 NC_009785.1 1838376 1841009 R identified by match to protein family HMM PF01074; match to protein family HMM PF07748; glycosyl hydrolase family protein complement(1838376..1841009) Streptococcus gordonii str. Challis substr. CH1 5598174 YP_001451039.1 CDS SGO_1769 NC_009785.1 1841033 1842322 R identified by match to protein family HMM PF06824; hypothetical protein complement(1841033..1842322) Streptococcus gordonii str. Challis substr. CH1 5599522 YP_001451040.1 CDS SGO_1770 NC_009785.1 1842492 1844585 D identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180; glycosyl hydrolase 1842492..1844585 Streptococcus gordonii str. Challis substr. CH1 5599132 YP_001451041.1 CDS SGO_1771 NC_009785.1 1844620 1846320 R identified by match to protein family HMM PF00754; hypothetical protein complement(1844620..1846320) Streptococcus gordonii str. Challis substr. CH1 5598823 YP_001451042.1 CDS SGO_1772 NC_009785.1 1846494 1847183 R identified by match to protein family HMM PF01988; integral membrane protein complement(1846494..1847183) Streptococcus gordonii str. Challis substr. CH1 5599552 YP_001451043.1 CDS SGO_1774 NC_009785.1 1848467 1849504 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-containing alcohol dehydrogenase complement(1848467..1849504) Streptococcus gordonii str. Challis substr. CH1 5599874 YP_001451044.1 CDS SGO_1775 NC_009785.1 1849787 1850419 R hypothetical protein complement(1849787..1850419) Streptococcus gordonii str. Challis substr. CH1 5597938 YP_001451045.1 CDS SGO_1776 NC_009785.1 1850416 1851030 R hypothetical protein complement(1850416..1851030) Streptococcus gordonii str. Challis substr. CH1 5598688 YP_001451046.1 CDS SGO_1777 NC_009785.1 1851027 1851659 R hypothetical protein complement(1851027..1851659) Streptococcus gordonii str. Challis substr. CH1 5599313 YP_001451047.1 CDS SGO_1778 NC_009785.1 1851656 1852288 R hypothetical protein complement(1851656..1852288) Streptococcus gordonii str. Challis substr. CH1 5598926 YP_001451048.1 CDS SGO_1779 NC_009785.1 1852285 1852893 R hypothetical protein complement(1852285..1852893) Streptococcus gordonii str. Challis substr. CH1 5597780 YP_001451049.1 CDS SGO_1780 NC_009785.1 1852890 1853501 R hypothetical protein complement(1852890..1853501) Streptococcus gordonii str. Challis substr. CH1 5598581 YP_001451050.1 CDS SGO_1781 NC_009785.1 1853516 1855012 R hypothetical protein complement(1853516..1855012) Streptococcus gordonii str. Challis substr. CH1 5599523 YP_001451051.1 CDS SGO_1782 NC_009785.1 1855114 1855473 R cingulin complement(1855114..1855473) Streptococcus gordonii str. Challis substr. CH1 5597857 YP_001451052.1 CDS SGO_1783 NC_009785.1 1855475 1855747 R hypothetical protein complement(1855475..1855747) Streptococcus gordonii str. Challis substr. CH1 5599253 YP_001451053.1 CDS leuS NC_009785.1 1855920 1858421 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1855920..1858421) Streptococcus gordonii str. Challis substr. CH1 5598700 YP_001451054.1 CDS SGO_1785 NC_009785.1 1858586 1859149 D identified by match to protein family HMM PF04140; nickel-cobalt-cadmium resistance protein; NccN 1858586..1859149 Streptococcus gordonii str. Challis substr. CH1 5599792 YP_001451055.1 CDS gldA NC_009785.1 1859217 1860311 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(1859217..1860311) Streptococcus gordonii str. Challis substr. CH1 5598938 YP_001451056.1 CDS SGO_1787 NC_009785.1 1860357 1861025 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase complement(1860357..1861025) Streptococcus gordonii str. Challis substr. CH1 5597767 YP_001451057.1 CDS SGO_1788 NC_009785.1 1861040 1863481 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase complement(1861040..1863481) Streptococcus gordonii str. Challis substr. CH1 5599177 YP_001451058.1 CDS SGO_1789 NC_009785.1 1863644 1864945 R identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system lactose/cellobiose family transporter subunit IIC complement(1863644..1864945) Streptococcus gordonii str. Challis substr. CH1 5599646 YP_001451059.1 CDS SGO_1790 NC_009785.1 1864948 1865277 R identified by match to protein family HMM PF02302; PTS system lactose/cellobiose specific transporter subunit IIB complement(1864948..1865277) Streptococcus gordonii str. Challis substr. CH1 5599793 YP_001451060.1 CDS SGO_1791 NC_009785.1 1865295 1865618 R identified by match to protein family HMM PF02255; PTS system lactose/cellobiose specific transporter subunit IIA complement(1865295..1865618) Streptococcus gordonii str. Challis substr. CH1 5599665 YP_001451061.1 CDS SGO_1792 NC_009785.1 1865842 1866807 R identified by match to protein family HMM PF04198; transcriptional regulator complement(1865842..1866807) Streptococcus gordonii str. Challis substr. CH1 5599401 YP_001451062.1 CDS SGO_1793 NC_009785.1 1866825 1867574 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator complement(1866825..1867574) Streptococcus gordonii str. Challis substr. CH1 5598577 YP_001451063.1 CDS pflC NC_009785.1 1867693 1868469 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; formate acetyltransferase activating enzyme 1867693..1868469 Streptococcus gordonii str. Challis substr. CH1 5599175 YP_001451064.1 CDS SGO_1795 NC_009785.1 1868776 1869474 D identified by match to protein family HMM PF00520; match to protein family HMM PF07885; potassium channel family protein 1868776..1869474 Streptococcus gordonii str. Challis substr. CH1 5597832 YP_001451065.1 CDS SGO_1796 NC_009785.1 1869549 1870427 R ABC transporter-like protein CylB complement(1869549..1870427) Streptococcus gordonii str. Challis substr. CH1 5598820 YP_001451066.1 CDS drra NC_009785.1 1870420 1871349 R identified by match to protein family HMM PF00005; ABC transporter-like protein CylA complement(1870420..1871349) Streptococcus gordonii str. Challis substr. CH1 5599616 YP_001451067.1 CDS SGO_1798 NC_009785.1 1871493 1872410 R identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator complement(1871493..1872410) Streptococcus gordonii str. Challis substr. CH1 5598540 YP_001451068.1 CDS SGO_1799 NC_009785.1 1872559 1874451 R identified by match to protein family HMM PF01431; match to protein family HMM PF05649; endopeptidase O complement(1872559..1874451) Streptococcus gordonii str. Challis substr. CH1 5598355 YP_001451069.1 CDS troB NC_009785.1 1874599 1875318 D ATP-binding; identified by match to protein family HMM PF00005; manganese transport protein SP1648 1874599..1875318 Streptococcus gordonii str. Challis substr. CH1 5599503 YP_001451070.1 CDS scaA NC_009785.1 1875320 1876156 D identified by match to protein family HMM PF00950; ABC transporter membrane-spanning permease - manganese transport 1875320..1876156 Streptococcus gordonii str. Challis substr. CH1 5599154 YP_001451071.1 CDS SGO_1802 NC_009785.1 1876183 1877115 D identified by match to protein family HMM PF01297; metal ABC transporter substrate-binding lipoprotein 1876183..1877115 Streptococcus gordonii str. Challis substr. CH1 5598451 YP_001451072.1 CDS tpx NC_009785.1 1877267 1877758 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1877267..1877758 Streptococcus gordonii str. Challis substr. CH1 5599297 YP_001451073.1 CDS hutI NC_009785.1 1877960 1879225 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(1877960..1879225) Streptococcus gordonii str. Challis substr. CH1 5599603 YP_001451074.1 CDS hutU NC_009785.1 1879430 1881460 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1879430..1881460 Streptococcus gordonii str. Challis substr. CH1 5599481 YP_001451075.1 CDS ftcD NC_009785.1 1881576 1882475 D identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024; glutamate formiminotransferase 1881576..1882475 Streptococcus gordonii str. Challis substr. CH1 5597848 YP_001451076.1 CDS SGO_1807 NC_009785.1 1882490 1883116 D identified by match to protein family HMM PF04961; hypothetical protein 1882490..1883116 Streptococcus gordonii str. Challis substr. CH1 5599649 YP_001451077.1 CDS fhs-2 NC_009785.1 1883183 1884856 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1883183..1884856 Streptococcus gordonii str. Challis substr. CH1 5598466 YP_001451078.1 CDS SGO_1809 NC_009785.1 1884869 1885468 D identified by match to protein family HMM PF05962; hypothetical protein 1884869..1885468 Streptococcus gordonii str. Challis substr. CH1 5599134 YP_001451079.1 CDS SGO_1810 NC_009785.1 1885556 1886890 D identified by match to protein family HMM PF00324; cationic amino acid transporter 1885556..1886890 Streptococcus gordonii str. Challis substr. CH1 5597794 YP_001451080.1 CDS hutH NC_009785.1 1886907 1888448 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1886907..1888448 Streptococcus gordonii str. Challis substr. CH1 5598052 YP_001451081.1 CDS SGO_1812 NC_009785.1 1888608 1888745 R hypothetical protein complement(1888608..1888745) Streptococcus gordonii str. Challis substr. CH1 5598714 YP_001451082.1 CDS hutG NC_009785.1 1889355 1890344 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 1889355..1890344 Streptococcus gordonii str. Challis substr. CH1 5598165 YP_001451083.1 CDS SGO_1814 NC_009785.1 1890409 1893450 R identified by match to protein family HMM PF03704; match to protein family HMM PF07719; putative regulatory protein complement(1890409..1893450) Streptococcus gordonii str. Challis substr. CH1 5597968 YP_001451084.1 CDS SGO_1815 NC_009785.1 1893685 1894749 R hypothetical protein complement(1893685..1894749) Streptococcus gordonii str. Challis substr. CH1 5598514 YP_001451085.1 CDS scaR NC_009785.1 1894941 1895588 D identified by similarity to GB:AAF25184.1; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; ScaR manganese-dependent regulator of scaCBA 1894941..1895588 Streptococcus gordonii str. Challis substr. CH1 5597814 YP_001451086.1 CDS SGO_1817 NC_009785.1 1895679 1896140 D identified by similarity to GB:AAF25185.1; match to protein family HMM PF01047; MarR family transcriptional regulator 1895679..1896140 Streptococcus gordonii str. Challis substr. CH1 5598321 YP_001451087.1 CDS SGO_1818 NC_009785.1 1896133 1896558 D identified by match to protein family HMM PF01878; hypothetical protein 1896133..1896558 Streptococcus gordonii str. Challis substr. CH1 5597947 YP_001451088.1 CDS SGO_1819 NC_009785.1 1896679 1897296 R identified by match to protein family HMM PF02517; CAAX amino protease complement(1896679..1897296) Streptococcus gordonii str. Challis substr. CH1 5599234 YP_001451089.1 CDS SGO_1820 NC_009785.1 1897493 1898290 D hypothetical protein 1897493..1898290 Streptococcus gordonii str. Challis substr. CH1 5598365 YP_001451090.1 CDS dtd NC_009785.1 1898373 1898828 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1898373..1898828) Streptococcus gordonii str. Challis substr. CH1 5597984 YP_001451091.1 CDS relA NC_009785.1 1898897 1901113 R identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP diphosphokinase complement(1898897..1901113) Streptococcus gordonii str. Challis substr. CH1 5599580 YP_001451092.1 CDS SGO_1823 NC_009785.1 1901256 1901999 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1901256..1901999) Streptococcus gordonii str. Challis substr. CH1 5598496 YP_001451093.1 CDS prmA NC_009785.1 1902000 1902956 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(1902000..1902956) Streptococcus gordonii str. Challis substr. CH1 5598884 YP_001451094.1 CDS SGO_1825 NC_009785.1 1903096 1903566 R identified by match to protein family HMM PF00583; acetyltransferase complement(1903096..1903566) Streptococcus gordonii str. Challis substr. CH1 5599399 YP_001451095.1 CDS mutT NC_009785.1 1903563 1904018 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1903563..1904018) Streptococcus gordonii str. Challis substr. CH1 5598571 YP_001451096.1 CDS SGO_1827 NC_009785.1 1904028 1904498 R hypothetical protein complement(1904028..1904498) Streptococcus gordonii str. Challis substr. CH1 5599444 YP_001451097.1 CDS SGO_1828 NC_009785.1 1904586 1905854 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1904586..1905854 Streptococcus gordonii str. Challis substr. CH1 5598576 YP_001451098.1 CDS mga NC_009785.1 1906323 1907804 R identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280; Mga-like regulatory protein complement(1906323..1907804) Streptococcus gordonii str. Challis substr. CH1 5599871 YP_001451099.1 CDS SGO_1831 NC_009785.1 1908101 1908340 D identified by match to protein family HMM PF04226; integral membrane protein 1908101..1908340 Streptococcus gordonii str. Challis substr. CH1 5599356 YP_001451100.1 CDS SGO_1832 NC_009785.1 1908396 1908977 D hypothetical protein 1908396..1908977 Streptococcus gordonii str. Challis substr. CH1 5598275 YP_001451101.1 CDS SGO_1833 NC_009785.1 1908989 1909159 D putative lipoprotein 1908989..1909159 Streptococcus gordonii str. Challis substr. CH1 5598447 YP_001451102.1 CDS SGO_1834 NC_009785.1 1909177 1909767 D identified by match to protein family HMM PF03780; hypothetical protein 1909177..1909767 Streptococcus gordonii str. Challis substr. CH1 5599043 YP_001451103.1 CDS SGO_1835 NC_009785.1 1909851 1910054 D identified by match to protein family HMM PF05532; hypothetical protein 1909851..1910054 Streptococcus gordonii str. Challis substr. CH1 5597982 YP_001451104.1 CDS SGO_1838 NC_009785.1 1911979 1913589 D identified by match to protein family HMM PF00005; ABC transporter 1911979..1913589 Streptococcus gordonii str. Challis substr. CH1 5597985 YP_001451105.1 CDS SGO_1839 NC_009785.1 1913652 1914107 R hypothetical protein complement(1913652..1914107) Streptococcus gordonii str. Challis substr. CH1 5599464 YP_001451106.1 CDS SGO_1840 NC_009785.1 1914123 1914257 R hypothetical protein complement(1914123..1914257) Streptococcus gordonii str. Challis substr. CH1 5598393 YP_001451107.1 CDS SGO_1841 NC_009785.1 1914487 1914717 R identified by match to protein family HMM PF04226; integral membrane protein complement(1914487..1914717) Streptococcus gordonii str. Challis substr. CH1 5599398 YP_001451108.1 CDS SGO_1842 NC_009785.1 1914721 1914990 R hypothetical protein complement(1914721..1914990) Streptococcus gordonii str. Challis substr. CH1 5598867 YP_001451109.1 CDS pepS NC_009785.1 1914971 1916212 R identified by match to protein family HMM PF02073; aminopeptidase PepS complement(1914971..1916212) Streptococcus gordonii str. Challis substr. CH1 5598253 YP_001451110.1 CDS SGO_1844 NC_009785.1 1916430 1919282 R identified by match to protein family HMM PF00004; CbxX/CfqX family protein complement(1916430..1919282) Streptococcus gordonii str. Challis substr. CH1 5598232 YP_001451111.1 CDS SGO_1845 NC_009785.1 1919456 1919605 R hypothetical protein complement(1919456..1919605) Streptococcus gordonii str. Challis substr. CH1 5598425 YP_001451112.1 CDS SGO_1846 NC_009785.1 1919624 1919770 R hypothetical protein complement(1919624..1919770) Streptococcus gordonii str. Challis substr. CH1 5598806 YP_001451113.1 CDS polC NC_009785.1 1919757 1924145 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC complement(1919757..1924145) Streptococcus gordonii str. Challis substr. CH1 5599829 YP_001451114.1 CDS SGO_1848 NC_009785.1 1924312 1924854 D putative lipoprotein 1924312..1924854 Streptococcus gordonii str. Challis substr. CH1 5598733 YP_001451115.1 CDS SGO_1849 NC_009785.1 1924967 1925434 D hypothetical protein 1924967..1925434 Streptococcus gordonii str. Challis substr. CH1 5599350 YP_001451116.1 CDS SGO_1850 NC_009785.1 1925538 1925918 R identified by match to protein family HMM PF08000; hypothetical protein complement(1925538..1925918) Streptococcus gordonii str. Challis substr. CH1 5597843 YP_001451117.1 CDS proS NC_009785.1 1926009 1927859 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1926009..1927859) Streptococcus gordonii str. Challis substr. CH1 5599745 YP_001451118.1 CDS SGO_1852 NC_009785.1 1927935 1929188 R identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(1927935..1929188) Streptococcus gordonii str. Challis substr. CH1 5598243 YP_001451119.1 CDS cdsA NC_009785.1 1929348 1930151 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(1929348..1930151) Streptococcus gordonii str. Challis substr. CH1 5598603 YP_001451120.1 CDS uppS NC_009785.1 1930160 1930909 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1930160..1930909) Streptococcus gordonii str. Challis substr. CH1 5599473 YP_001451121.1 CDS yajC NC_009785.1 1931170 1931502 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1931170..1931502) Streptococcus gordonii str. Challis substr. CH1 5598660 YP_001451122.1 CDS SGO_1856 NC_009785.1 1931674 1933788 R identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent proteinase ATP-binding chain complement(1931674..1933788) Streptococcus gordonii str. Challis substr. CH1 5599249 YP_001451123.1 CDS SGO_1857 NC_009785.1 1934039 1935949 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996; PTS system transporter subunit IIABC complement(1934039..1935949) Streptococcus gordonii str. Challis substr. CH1 5597892 YP_001451124.1 CDS SGO_1858 NC_009785.1 1936149 1937603 D identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322; beta-fructofuranosidase/sucrose 6 phoshate hydrolase 1936149..1937603 Streptococcus gordonii str. Challis substr. CH1 5599045 YP_001451125.1 CDS SGO_1859 NC_009785.1 1937584 1938549 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose regulon regulatory protein 1937584..1938549 Streptococcus gordonii str. Challis substr. CH1 5599016 YP_001451126.1 CDS SGO_1860 NC_009785.1 1938625 1939482 R identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase complement(1938625..1939482) Streptococcus gordonii str. Challis substr. CH1 5599765 YP_001451127.1 CDS nusB NC_009785.1 1939700 1940113 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1939700..1940113) Streptococcus gordonii str. Challis substr. CH1 5597974 YP_001451128.1 CDS SGO_1862 NC_009785.1 1940118 1940507 R identified by match to protein family HMM PF03780; alkaline shock protein complement(1940118..1940507) Streptococcus gordonii str. Challis substr. CH1 5599329 YP_001451129.1 CDS efp NC_009785.1 1940527 1941087 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1940527..1941087) Streptococcus gordonii str. Challis substr. CH1 5597797 YP_001451130.1 CDS SGO_1864 NC_009785.1 1941149 1942210 R identified by match to protein family HMM PF00557; match to protein family HMM PF01321; X-Pro aminopeptidase complement(1941149..1942210) Streptococcus gordonii str. Challis substr. CH1 5599110 YP_001451131.1 CDS uvrA NC_009785.1 1942362 1945193 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1942362..1945193) Streptococcus gordonii str. Challis substr. CH1 5598561 YP_001451132.1 CDS corA NC_009785.1 1945322 1946266 D identified by match to protein family HMM PF01544; magnesium and cobalt transporter 1945322..1946266 Streptococcus gordonii str. Challis substr. CH1 5599814 YP_001451133.1 CDS SGO_1867 NC_009785.1 1946285 1946959 D identified by match to protein family HMM PF06570; hypothetical protein 1946285..1946959 Streptococcus gordonii str. Challis substr. CH1 5599204 YP_001451134.1 CDS SGO_1868 NC_009785.1 1946996 1947505 R identified by match to protein family HMM PF00583; acetyltransferase complement(1946996..1947505) Streptococcus gordonii str. Challis substr. CH1 5598090 YP_001451135.1 CDS SGO_1869 NC_009785.1 1947704 1948723 R hypothetical protein complement(1947704..1948723) Streptococcus gordonii str. Challis substr. CH1 5597842 YP_001451136.1 CDS SGO_1870 NC_009785.1 1948724 1950436 R hypothetical protein complement(1948724..1950436) Streptococcus gordonii str. Challis substr. CH1 5599070 YP_001451137.1 CDS SGO_1871 NC_009785.1 1950514 1951512 D putative lipoprotein 1950514..1951512 Streptococcus gordonii str. Challis substr. CH1 5597914 YP_001451138.1 CDS SGO_1872 NC_009785.1 1951484 1952299 D hypothetical protein 1951484..1952299 Streptococcus gordonii str. Challis substr. CH1 5599791 YP_001451139.1 CDS SGO_1873 NC_009785.1 1952302 1952769 D hypothetical protein 1952302..1952769 Streptococcus gordonii str. Challis substr. CH1 5599371 YP_001451140.1 CDS SGO_1874 NC_009785.1 1953073 1953282 R hypothetical protein complement(1953073..1953282) Streptococcus gordonii str. Challis substr. CH1 5598419 YP_001451141.1 CDS SGO_1875 NC_009785.1 1953188 1953289 R hypothetical protein complement(1953188..1953289) Streptococcus gordonii str. Challis substr. CH1 5599785 YP_001451142.1 CDS SGO_1876 NC_009785.1 1953282 1954826 R hypothetical protein complement(1953282..1954826) Streptococcus gordonii str. Challis substr. CH1 5599163 YP_001451143.1 CDS SGO_1877 NC_009785.1 1954819 1955532 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1954819..1955532) Streptococcus gordonii str. Challis substr. CH1 5597995 YP_001451144.1 CDS SGO_1878 NC_009785.1 1955673 1956287 R identified by match to protein family HMM PF00440; transcriptional regulator complement(1955673..1956287) Streptococcus gordonii str. Challis substr. CH1 5597943 YP_001451145.1 CDS rpsR NC_009785.1 1956381 1956620 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1956381..1956620) Streptococcus gordonii str. Challis substr. CH1 5599831 YP_001451146.1 CDS ssb-1 NC_009785.1 1956659 1957150 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1956659..1957150) Streptococcus gordonii str. Challis substr. CH1 5599233 YP_001451147.1 CDS rpsF NC_009785.1 1957167 1957457 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1957167..1957457) Streptococcus gordonii str. Challis substr. CH1 5599553 YP_001451148.1 CDS folE NC_009785.1 1957670 1958233 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1957670..1958233 Streptococcus gordonii str. Challis substr. CH1 5599751 YP_001451149.1 CDS SGO_1883 NC_009785.1 1958281 1959102 D hypothetical protein 1958281..1959102 Streptococcus gordonii str. Challis substr. CH1 5599124 YP_001451150.1 CDS SGO_1884 NC_009785.1 1959196 1959954 R identified by match to protein family HMM PF02677; hypothetical protein complement(1959196..1959954) Streptococcus gordonii str. Challis substr. CH1 5598706 YP_001451151.1 CDS groEL NC_009785.1 1960078 1961700 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1960078..1961700) Streptococcus gordonii str. Challis substr. CH1 5599485 YP_001451152.1 CDS groES NC_009785.1 1961723 1962004 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1961723..1962004) Streptococcus gordonii str. Challis substr. CH1 5598040 YP_001451153.1 CDS SGO_1887 NC_009785.1 1962164 1962967 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1962164..1962967) Streptococcus gordonii str. Challis substr. CH1 5599136 YP_001451154.1 CDS SGO_1888 NC_009785.1 1962967 1964940 R identified by match to protein family HMM PF02653; match to protein family HMM PF04392; permease complement(1962967..1964940) Streptococcus gordonii str. Challis substr. CH1 5599462 YP_001451155.1 CDS SGO_1889 NC_009785.1 1965344 1965634 R hypothetical protein complement(1965344..1965634) Streptococcus gordonii str. Challis substr. CH1 5597824 YP_001451156.1 CDS SGO_1890 NC_009785.1 1965646 1966476 R identified by match to protein family HMM PF03613; PTS system fructose(mannose)-specific transporter subunit IID complement(1965646..1966476) Streptococcus gordonii str. Challis substr. CH1 5599754 YP_001451157.1 CDS SGO_1891 NC_009785.1 1966478 1967329 R identified by match to protein family HMM PF03609; PTS system transporter subunit IIC complement(1966478..1967329) Streptococcus gordonii str. Challis substr. CH1 5598529 YP_001451158.1 CDS SGO_1892 NC_009785.1 1967360 1967854 R identified by match to protein family HMM PF03830; PTS system fructose(mannose)-specific transporter subunit IIB complement(1967360..1967854) Streptococcus gordonii str. Challis substr. CH1 5599450 YP_001451159.1 CDS SGO_1893 NC_009785.1 1967875 1968312 R identified by match to protein family HMM PF03610; PTS system fructose(mannose)-specific transporter subunit IIA complement(1967875..1968312) Streptococcus gordonii str. Challis substr. CH1 5599809 YP_001451160.1 CDS SGO_1894 NC_009785.1 1968529 1969812 R identified by match to protein family HMM PF01547; sugar-binding cell envelope protein complement(1968529..1969812) Streptococcus gordonii str. Challis substr. CH1 5598324 YP_001451161.1 CDS SGO_1895 NC_009785.1 1969809 1970492 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator complement(1969809..1970492) Streptococcus gordonii str. Challis substr. CH1 5598520 YP_001451162.1 CDS SGO_1896 NC_009785.1 1970485 1971798 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensory transduction histidine kinase complement(1970485..1971798) Streptococcus gordonii str. Challis substr. CH1 5599384 YP_001451163.1 CDS rbsB NC_009785.1 1971798 1972751 R identified by match to protein family HMM PF00532; ribose ABC transporter ribose-binding protein complement(1971798..1972751) Streptococcus gordonii str. Challis substr. CH1 5598148 YP_001451164.1 CDS SGO_1898 NC_009785.1 1973033 1974100 R identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107; glutamyl aminopeptidase complement(1973033..1974100) Streptococcus gordonii str. Challis substr. CH1 5598980 YP_001451165.1 CDS SGO_1899 NC_009785.1 1974280 1974567 D hypothetical protein 1974280..1974567 Streptococcus gordonii str. Challis substr. CH1 5598027 YP_001451166.1 CDS SGO_1900 NC_009785.1 1974564 1974881 D identified by match to protein family HMM PF00085; thioredoxin family protein 1974564..1974881 Streptococcus gordonii str. Challis substr. CH1 5597927 YP_001451167.1 CDS SGO_1901 NC_009785.1 1974898 1975524 D identified by match to protein family HMM PF01588; tRNA-binding domain-containing protein 1974898..1975524 Streptococcus gordonii str. Challis substr. CH1 5599228 YP_001451168.1 CDS ssb NC_009785.1 1975587 1975982 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1975587..1975982 Streptococcus gordonii str. Challis substr. CH1 5599271 YP_001451169.1 CDS SGO_1903 NC_009785.1 1976155 1977645 D identified by match to protein family HMM PF08903; hypothetical protein 1976155..1977645 Streptococcus gordonii str. Challis substr. CH1 5598079 YP_001451170.1 CDS SGO_1904 NC_009785.1 1977699 1978133 R hypothetical protein complement(1977699..1978133) Streptococcus gordonii str. Challis substr. CH1 5598479 YP_001451171.1 CDS SGO_1905 NC_009785.1 1978143 1978307 R hypothetical protein complement(1978143..1978307) Streptococcus gordonii str. Challis substr. CH1 5598015 YP_001451172.1 CDS SGO_1906 NC_009785.1 1978304 1978507 R identified by match to protein family HMM PF01381; HTH DNA-binding protein complement(1978304..1978507) Streptococcus gordonii str. Challis substr. CH1 5599300 YP_001451173.1 CDS SGO_1907 NC_009785.1 1978804 1979841 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein complement(1978804..1979841) Streptococcus gordonii str. Challis substr. CH1 5598450 YP_001451174.1 CDS SGO_1908 NC_009785.1 1979808 1980506 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA response regulator complement(1979808..1980506) Streptococcus gordonii str. Challis substr. CH1 5599023 YP_001451175.1 CDS SGO_1909 NC_009785.1 1980519 1981241 R hypothetical protein complement(1980519..1981241) Streptococcus gordonii str. Challis substr. CH1 5597772 YP_001451176.1 CDS SGO_1910 NC_009785.1 1981241 1982029 R hypothetical protein complement(1981241..1982029) Streptococcus gordonii str. Challis substr. CH1 5599607 YP_001451177.1 CDS SGO_1911 NC_009785.1 1982031 1982738 R identified by match to protein family HMM PF00005; ABC transporter ATPase complement(1982031..1982738) Streptococcus gordonii str. Challis substr. CH1 5597998 YP_001451178.1 CDS SGO_1912 NC_009785.1 1982837 1983649 R identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; bifunctional folate synthesis protein complement(1982837..1983649) Streptococcus gordonii str. Challis substr. CH1 5599012 YP_001451179.1 CDS SGO_1913 NC_009785.1 1983630 1984964 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate synthetase complement(1983630..1984964) Streptococcus gordonii str. Challis substr. CH1 5598644 YP_001451180.1 CDS folP NC_009785.1 1984966 1985931 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(1984966..1985931) Streptococcus gordonii str. Challis substr. CH1 5599608 YP_001451181.1 CDS SGO_1915 NC_009785.1 1986009 1986674 R identified by match to protein family HMM PF02517; abortive infection protein complement(1986009..1986674) Streptococcus gordonii str. Challis substr. CH1 5598126 YP_001451182.1 CDS ackA NC_009785.1 1986722 1987912 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1986722..1987912) Streptococcus gordonii str. Challis substr. CH1 5599466 YP_001451183.1 CDS SGO_1917 NC_009785.1 1987962 1988915 R hypothetical protein complement(1987962..1988915) Streptococcus gordonii str. Challis substr. CH1 5599049 YP_001451184.1 CDS SGO_1918 NC_009785.1 1988946 1989374 R hypothetical protein complement(1988946..1989374) Streptococcus gordonii str. Challis substr. CH1 5598273 YP_001451185.1 CDS SGO_1919 NC_009785.1 1989358 1989795 R ComYD-like protein complement(1989358..1989795) Streptococcus gordonii str. Challis substr. CH1 5597918 YP_001451186.1 CDS SGO_1920 NC_009785.1 1989779 1990072 R hypothetical protein complement(1989779..1990072) Streptococcus gordonii str. Challis substr. CH1 5598852 YP_001451187.1 CDS comYD NC_009785.1 1990044 1990472 R ComYD complement(1990044..1990472) Streptococcus gordonii str. Challis substr. CH1 5599432 YP_001451188.1 CDS comYC NC_009785.1 1990432 1990749 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; ComYC competence protein complement(1990432..1990749) Streptococcus gordonii str. Challis substr. CH1 5598437 YP_001451189.1 CDS comYB NC_009785.1 1990746 1991780 R identified by match to protein family HMM PF00482; competence protein complement(1990746..1991780) Streptococcus gordonii str. Challis substr. CH1 5599656 YP_001451190.1 CDS comYA NC_009785.1 1991692 1992651 R identified by match to protein family HMM PF00437; competence protein comYA complement(1991692..1992651) Streptococcus gordonii str. Challis substr. CH1 5598297 YP_001451191.1 CDS SGO_1925 NC_009785.1 1992753 1993121 R identified by match to protein family HMM PF06279; putative DNA binding protein complement(1992753..1993121) Streptococcus gordonii str. Challis substr. CH1 5598573 YP_001451192.1 CDS rpoC NC_009785.1 1993372 1997019 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1993372..1997019) Streptococcus gordonii str. Challis substr. CH1 5598780 YP_001451193.1 CDS rpoB NC_009785.1 1997060 2000626 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1997060..2000626) Streptococcus gordonii str. Challis substr. CH1 5599625 YP_001451194.1 CDS pbp1b NC_009785.1 2001049 2003598 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1B complement(2001049..2003598) Streptococcus gordonii str. Challis substr. CH1 5598934 YP_001451195.1 CDS tyrS NC_009785.1 2003776 2005032 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2003776..2005032 Streptococcus gordonii str. Challis substr. CH1 5599339 YP_001451196.1 CDS rrmA NC_009785.1 2005120 2005968 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; ribosomal RNA large subunit methyltransferase A 2005120..2005968 Streptococcus gordonii str. Challis substr. CH1 5598426 YP_001451197.1 CDS SGO_1931 NC_009785.1 2005994 2006539 R putative lipoprotein complement(2005994..2006539) Streptococcus gordonii str. Challis substr. CH1 5599726 YP_001451198.1 CDS SGO_1932 NC_009785.1 2006636 2007247 R hypothetical protein complement(2006636..2007247) Streptococcus gordonii str. Challis substr. CH1 5598936 YP_001451199.1 CDS SGO_1933 NC_009785.1 2007384 2007593 R identified by match to protein family HMM PF00403; copper transport protein CopZ-like protein complement(2007384..2007593) Streptococcus gordonii str. Challis substr. CH1 5599282 YP_001451200.1 CDS SGO_1934 NC_009785.1 2007614 2009857 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(2007614..2009857) Streptococcus gordonii str. Challis substr. CH1 5598296 YP_001451201.1 CDS SGO_1935 NC_009785.1 2009868 2010299 R identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698; negative transcriptional regulator, CopY complement(2009868..2010299) Streptococcus gordonii str. Challis substr. CH1 5599047 YP_001451202.1 CDS adcA NC_009785.1 2010448 2011950 R identified by match to protein family HMM PF01297; match to protein family HMM PF09223; metal-binding (Mn) permease complement(2010448..2011950) Streptococcus gordonii str. Challis substr. CH1 5599602 YP_001451203.1 CDS adcB NC_009785.1 2011960 2012766 R identified by match to protein family HMM PF00950; ABC transporter permease, Mn complement(2011960..2012766) Streptococcus gordonii str. Challis substr. CH1 5598560 YP_001451204.1 CDS adcC NC_009785.1 2012759 2013469 R identified by similarity to GB:AAO43168.1; match to protein family HMM PF00005; ATP-binding protein, Mn complement(2012759..2013469) Streptococcus gordonii str. Challis substr. CH1 5597872 YP_001451205.1 CDS adcR NC_009785.1 2013466 2013909 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; repressor protein adcR complement(2013466..2013909) Streptococcus gordonii str. Challis substr. CH1 5599115 YP_001451206.1 CDS SGO_1940 NC_009785.1 2014527 2015669 D identified by match to protein family HMM PF07690; transporter 2014527..2015669 Streptococcus gordonii str. Challis substr. CH1 5599058 YP_001451207.1 CDS SGO_1957 NC_009785.1 2022329 2023609 R hypothetical protein complement(2022329..2023609) Streptococcus gordonii str. Challis substr. CH1 5599843 YP_001451208.1 CDS rplQ NC_009785.1 2023988 2024374 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2023988..2024374) Streptococcus gordonii str. Challis substr. CH1 5599424 YP_001451209.1 CDS rpoA NC_009785.1 2024386 2025324 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2024386..2025324) Streptococcus gordonii str. Challis substr. CH1 5598925 YP_001451210.1 CDS rpsK NC_009785.1 2025370 2025753 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2025370..2025753) Streptococcus gordonii str. Challis substr. CH1 5598399 YP_001451211.1 CDS rpsM NC_009785.1 2025773 2026138 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2025773..2026138) Streptococcus gordonii str. Challis substr. CH1 5598546 YP_001451212.1 CDS rpmJ NC_009785.1 2026155 2026271 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2026155..2026271) Streptococcus gordonii str. Challis substr. CH1 5597739 YP_001451213.1 CDS infA NC_009785.1 2026296 2026568 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2026296..2026568) Streptococcus gordonii str. Challis substr. CH1 5598944 YP_001451214.1 CDS adk NC_009785.1 2026632 2027270 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2026632..2027270) Streptococcus gordonii str. Challis substr. CH1 5599513 YP_001451215.1 CDS secY NC_009785.1 2027366 2028676 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2027366..2028676) Streptococcus gordonii str. Challis substr. CH1 5598094 YP_001451216.1 CDS rplO NC_009785.1 2028689 2029129 R late assembly protein; 50S ribosomal protein L15 complement(2028689..2029129) Streptococcus gordonii str. Challis substr. CH1 5599151 YP_001451217.1 CDS rpmD NC_009785.1 2029285 2029509 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2029285..2029509) Streptococcus gordonii str. Challis substr. CH1 5598331 YP_001451218.1 CDS rpsE NC_009785.1 2029481 2029975 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2029481..2029975) Streptococcus gordonii str. Challis substr. CH1 5598816 YP_001451219.1 CDS rplR NC_009785.1 2029994 2030350 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2029994..2030350) Streptococcus gordonii str. Challis substr. CH1 5597808 YP_001451220.1 CDS rplF NC_009785.1 2030433 2030969 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2030433..2030969) Streptococcus gordonii str. Challis substr. CH1 5599211 YP_001451221.1 CDS rpsH NC_009785.1 2031158 2031556 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2031158..2031556) Streptococcus gordonii str. Challis substr. CH1 5599169 YP_001451222.1 CDS rpsN NC_009785.1 2031841 2032026 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2031841..2032026) Streptococcus gordonii str. Challis substr. CH1 5598492 YP_001451223.1 CDS rplE NC_009785.1 2032044 2032586 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2032044..2032586) Streptococcus gordonii str. Challis substr. CH1 5599445 YP_001451224.1 CDS rplX NC_009785.1 2032610 2032915 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2032610..2032915) Streptococcus gordonii str. Challis substr. CH1 5597837 YP_001451225.1 CDS rplN NC_009785.1 2032990 2033358 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2032990..2033358) Streptococcus gordonii str. Challis substr. CH1 5598277 YP_001451226.1 CDS rpsQ NC_009785.1 2033384 2033644 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2033384..2033644) Streptococcus gordonii str. Challis substr. CH1 5599069 YP_001451227.1 CDS rpmC NC_009785.1 2033668 2033874 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2033668..2033874) Streptococcus gordonii str. Challis substr. CH1 5598163 YP_001451228.1 CDS rplP NC_009785.1 2033884 2034297 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2033884..2034297) Streptococcus gordonii str. Challis substr. CH1 5598861 YP_001451229.1 CDS rpsC NC_009785.1 2034301 2034954 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2034301..2034954) Streptococcus gordonii str. Challis substr. CH1 5598481 YP_001451230.1 CDS rplV NC_009785.1 2034967 2035311 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2034967..2035311) Streptococcus gordonii str. Challis substr. CH1 5598362 YP_001451231.1 CDS rpsS NC_009785.1 2035323 2035604 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2035323..2035604) Streptococcus gordonii str. Challis substr. CH1 5598783 YP_001451232.1 CDS rplB NC_009785.1 2035691 2036524 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2035691..2036524) Streptococcus gordonii str. Challis substr. CH1 5599405 YP_001451233.1 CDS rplW NC_009785.1 2036542 2036838 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2036542..2036838) Streptococcus gordonii str. Challis substr. CH1 5598476 YP_001451234.1 CDS rplD NC_009785.1 2036838 2037461 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2036838..2037461) Streptococcus gordonii str. Challis substr. CH1 5599319 YP_001451235.1 CDS rplC NC_009785.1 2037486 2038112 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2037486..2038112) Streptococcus gordonii str. Challis substr. CH1 5598138 YP_001451236.1 CDS rpsJ NC_009785.1 2038196 2038504 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2038196..2038504) Streptococcus gordonii str. Challis substr. CH1 5597840 YP_001451237.1 CDS SGO_1987 NC_009785.1 2038703 2038864 D hypothetical protein 2038703..2038864 Streptococcus gordonii str. Challis substr. CH1 5598832 YP_001451238.1 CDS SGO_1988 NC_009785.1 2038914 2039570 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase complement(2038914..2039570) Streptococcus gordonii str. Challis substr. CH1 5598841 YP_001451239.1 CDS purA NC_009785.1 2039627 2040919 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2039627..2040919) Streptococcus gordonii str. Challis substr. CH1 5598146 YP_001451240.1 CDS SGO_1990 NC_009785.1 2041216 2043471 D Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 2041216..2043471 Streptococcus gordonii str. Challis substr. CH1 5599275 YP_001451241.1 CDS hslO NC_009785.1 2043661 2044533 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2043661..2044533 Streptococcus gordonii str. Challis substr. CH1 5598173 YP_001451242.1 CDS SGO_1992 NC_009785.1 2044420 2044692 R hypothetical protein complement(2044420..2044692) Streptococcus gordonii str. Challis substr. CH1 5598543 YP_001451243.1 CDS SGO_1993 NC_009785.1 2044544 2045497 D identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; transcriptional regulator 2044544..2045497 Streptococcus gordonii str. Challis substr. CH1 5599807 YP_001451244.1 CDS SGO_1994 NC_009785.1 2045537 2046211 R putative lipoprotein complement(2045537..2046211) Streptococcus gordonii str. Challis substr. CH1 5599212 YP_001451245.1 CDS SGO_1995 NC_009785.1 2046448 2047236 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2046448..2047236) Streptococcus gordonii str. Challis substr. CH1 5597793 YP_001451246.1 CDS SGO_1996 NC_009785.1 2047280 2048095 R identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter complement(2047280..2048095) Streptococcus gordonii str. Challis substr. CH1 5599582 YP_001451247.1 CDS nadR NC_009785.1 2048117 2049175 R identified by match to protein family HMM TIGR00125; transcriptional regulator complement(2048117..2049175) Streptococcus gordonii str. Challis substr. CH1 5598225 YP_001451248.1 CDS clpB NC_009785.1 2049395 2051824 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent Clp proteinase, ATP-binding chain complement(2049395..2051824) Streptococcus gordonii str. Challis substr. CH1 5598670 YP_001451249.1 CDS ctsR NC_009785.1 2051831 2052289 R identified by match to protein family HMM PF05848; transcription regulator ctsR complement(2051831..2052289) Streptococcus gordonii str. Challis substr. CH1 5598402 YP_001451250.1 CDS tsf NC_009785.1 2053066 2054109 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2053066..2054109) Streptococcus gordonii str. Challis substr. CH1 5598261 YP_001451251.1 CDS rpsB NC_009785.1 2054188 2054970 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2054188..2054970) Streptococcus gordonii str. Challis substr. CH1 5598912 YP_001451252.1 CDS SGO_2002 NC_009785.1 2055112 2055234 D hypothetical protein 2055112..2055234 Streptococcus gordonii str. Challis substr. CH1 5598999 YP_001451253.1 CDS SGO_2004 NC_009785.1 2055549 2057972 R identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM TIGR01167; LPXTG cell wall surface protein complement(2055549..2057972) Streptococcus gordonii str. Challis substr. CH1 5599870 YP_001451254.1 CDS SGO_2005 NC_009785.1 2058049 2068989 R identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; LPXTG cell wall surface protein complement(2058049..2068989) Streptococcus gordonii str. Challis substr. CH1 5598672 YP_001451255.1 CDS SGO_2006 NC_009785.1 2069055 2069618 R identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin signature protein complement(2069055..2069618) Streptococcus gordonii str. Challis substr. CH1 5598424 YP_001451256.1 CDS nusG NC_009785.1 2070003 2070539 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(2070003..2070539) Streptococcus gordonii str. Challis substr. CH1 5598494 YP_001451257.1 CDS secE NC_009785.1 2070723 2070899 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(2070723..2070899) Streptococcus gordonii str. Challis substr. CH1 5597738 YP_001451258.1 CDS SGO_2009 NC_009785.1 2071212 2072126 D identified by match to protein family HMM PF04228; zinc proteinase 2071212..2072126 Streptococcus gordonii str. Challis substr. CH1 5599022 YP_001451259.1 CDS pbp2a NC_009785.1 2072250 2074472 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 2A complement(2072250..2074472) Streptococcus gordonii str. Challis substr. CH1 5598843 YP_001451260.1 CDS SGO_2011 NC_009785.1 2074623 2075495 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 2074623..2075495 Streptococcus gordonii str. Challis substr. CH1 5598045 YP_001451261.1 CDS SGO_2012 NC_009785.1 2075667 2076638 R identified by match to protein family HMM PF01757; transmembrane protein complement(2075667..2076638) Streptococcus gordonii str. Challis substr. CH1 5597770 YP_001451262.1 CDS SGO_2013 NC_009785.1 2076906 2080388 R identified by match to protein family HMM PF01183; match to protein family HMM PF08481; putative N-acetylmuramidase/lysin complement(2076906..2080388) Streptococcus gordonii str. Challis substr. CH1 5598309 YP_001451263.1 CDS SGO_2015 NC_009785.1 2080914 2082323 R polysaccharide transporter complement(2080914..2082323) Streptococcus gordonii str. Challis substr. CH1 5598640 YP_001451264.1 CDS SGO_2016 NC_009785.1 2082334 2083425 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; nucleotide sugar dehydratase complement(2082334..2083425) Streptococcus gordonii str. Challis substr. CH1 5599024 YP_001451265.1 CDS SGO_2017 NC_009785.1 2083400 2084122 R identified by match to protein family HMM PF00483; match to protein family HMM PF01128; nucleotidyltransferase complement(2083400..2084122) Streptococcus gordonii str. Challis substr. CH1 5599137 YP_001451266.1 CDS SGO_2018 NC_009785.1 2084125 2085444 R extrracellular polysaccharide polymerase putative complement(2084125..2085444) Streptococcus gordonii str. Challis substr. CH1 5598068 YP_001451267.1 CDS licD NC_009785.1 2085444 2086310 R identified by match to protein family HMM PF04991; licD3 protein complement(2085444..2086310) Streptococcus gordonii str. Challis substr. CH1 5598459 YP_001451268.1 CDS SGO_2020 NC_009785.1 2086372 2087328 R identified by match to protein family HMM PF00535; glycosyltransferase complement(2086372..2087328) Streptococcus gordonii str. Challis substr. CH1 5598254 YP_001451269.1 CDS SGO_2021 NC_009785.1 2087325 2088152 R identified by match to protein family HMM PF00535; extracellular polysaccharide glycosyltransferase complement(2087325..2088152) Streptococcus gordonii str. Challis substr. CH1 5598799 YP_001451270.1 CDS SGO_2022 NC_009785.1 2088168 2089034 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucose 4-epimerase complement(2088168..2089034) Streptococcus gordonii str. Challis substr. CH1 5598485 YP_001451271.1 CDS SGO_2023 NC_009785.1 2089042 2089647 R identified by match to protein family HMM PF02397; galactosyltransferase complement(2089042..2089647) Streptococcus gordonii str. Challis substr. CH1 5598006 YP_001451272.1 CDS SGO_2024 NC_009785.1 2089661 2091472 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; extracellular polysaccharide biosynthesis complement(2089661..2091472) Streptococcus gordonii str. Challis substr. CH1 5597774 YP_001451273.1 CDS wze NC_009785.1 2091491 2092186 R identified by match to protein family HMM TIGR01007; putative autophosphorylating protein tyrosine kinase complement(2091491..2092186) Streptococcus gordonii str. Challis substr. CH1 5597791 YP_001451274.1 CDS wzd NC_009785.1 2092196 2092891 R identified by match to protein family HMM PF02706; MPA1 family polysaccharide export protein complement(2092196..2092891) Streptococcus gordonii str. Challis substr. CH1 5599270 YP_001451275.1 CDS wzh NC_009785.1 2092922 2093653 R identified by match to protein family HMM PF02811; wzh/putative phosphotyrosine-protein phosphatase complement(2092922..2093653) Streptococcus gordonii str. Challis substr. CH1 5599560 YP_001451276.1 CDS wzg NC_009785.1 2093657 2095117 R identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(2093657..2095117) Streptococcus gordonii str. Challis substr. CH1 5598391 YP_001451277.1 CDS nrdG NC_009785.1 2095411 2096010 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleotide triphosphate reductase activator protein complement(2095411..2096010) Streptococcus gordonii str. Challis substr. CH1 5598713 YP_001451278.1 CDS SGO_2030 NC_009785.1 2096007 2096525 R identified by match to protein family HMM PF00583; acetyltransferase complement(2096007..2096525) Streptococcus gordonii str. Challis substr. CH1 5598397 YP_001451279.1 CDS SGO_2031 NC_009785.1 2096535 2097038 R identified by match to protein family HMM PF00583; acetyltransferase complement(2096535..2097038) Streptococcus gordonii str. Challis substr. CH1 5599433 YP_001451280.1 CDS SGO_2032 NC_009785.1 2097053 2097196 R hypothetical protein complement(2097053..2097196) Streptococcus gordonii str. Challis substr. CH1 5599743 YP_001451281.1 CDS nrdD NC_009785.1 2097278 2099482 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2097278..2099482) Streptococcus gordonii str. Challis substr. CH1 5599224 YP_001451282.1 CDS SGO_2034 NC_009785.1 2099592 2101163 R hypothetical protein complement(2099592..2101163) Streptococcus gordonii str. Challis substr. CH1 5597821 YP_001451283.1 CDS SGO_2035 NC_009785.1 2101248 2101346 D hypothetical protein 2101248..2101346 Streptococcus gordonii str. Challis substr. CH1 5598818 YP_001451284.1 CDS SGO_2036 NC_009785.1 2101253 2101396 R hypothetical protein complement(2101253..2101396) Streptococcus gordonii str. Challis substr. CH1 5598580 YP_001451285.1 CDS SGO_2037 NC_009785.1 2101494 2102999 R identified by match to protein family HMM PF00614; cardiolipin synthase complement(2101494..2102999) Streptococcus gordonii str. Challis substr. CH1 5599769 YP_001451286.1 CDS SGO_2038 NC_009785.1 2103143 2103622 R putative lipoprotein complement(2103143..2103622) Streptococcus gordonii str. Challis substr. CH1 5597811 YP_001451287.1 CDS SGO_2039 NC_009785.1 2103730 2104968 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate synthase complement(2103730..2104968) Streptococcus gordonii str. Challis substr. CH1 5599590 YP_001451288.1 CDS SGO_2040 NC_009785.1 2105219 2105530 R identified by match to protein family HMM PF06949; hypothetical protein complement(2105219..2105530) Streptococcus gordonii str. Challis substr. CH1 5599866 YP_001451289.1 CDS SGO_2041 NC_009785.1 2105552 2105971 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2105552..2105971) Streptococcus gordonii str. Challis substr. CH1 5599280 YP_001451290.1 CDS SGO_2042 NC_009785.1 2105971 2106237 R identified by match to protein family HMM PF06135; hypothetical protein complement(2105971..2106237) Streptococcus gordonii str. Challis substr. CH1 5598465 YP_001451291.1 CDS SGO_2043 NC_009785.1 2106349 2106921 R putative lipoprotein complement(2106349..2106921) Streptococcus gordonii str. Challis substr. CH1 5599143 YP_001451292.1 CDS spxA NC_009785.1 2107067 2107465 R the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx complement(2107067..2107465) Streptococcus gordonii str. Challis substr. CH1 5599389 YP_001451293.1 CDS recA NC_009785.1 2107552 2108703 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2107552..2108703) Streptococcus gordonii str. Challis substr. CH1 5599061 YP_001451294.1 CDS cinA NC_009785.1 2108761 2110017 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(2108761..2110017) Streptococcus gordonii str. Challis substr. CH1 5598202 YP_001451295.1 CDS SGO_2047 NC_009785.1 2110292 2110702 D identified by match to protein family HMM PF01381; transcriptional regulator 2110292..2110702 Streptococcus gordonii str. Challis substr. CH1 5597756 YP_001451296.1 CDS SGO_2048 NC_009785.1 2110754 2111449 R identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein complement(2110754..2111449) Streptococcus gordonii str. Challis substr. CH1 5597761 YP_001451297.1 CDS tagI NC_009785.1 2111418 2111972 R identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I complement(2111418..2111972) Streptococcus gordonii str. Challis substr. CH1 5598199 YP_001451298.1 CDS ruvA NC_009785.1 2111982 2112572 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2111982..2112572) Streptococcus gordonii str. Challis substr. CH1 5598853 YP_001451299.1 CDS SGO_2051 NC_009785.1 2112742 2113245 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 2112742..2113245 Streptococcus gordonii str. Challis substr. CH1 5598942 YP_001451300.1 CDS SGO_2052 NC_009785.1 2113229 2113750 D identified by match to protein family HMM PF06271; hypothetical protein 2113229..2113750 Streptococcus gordonii str. Challis substr. CH1 5598627 YP_001451301.1 CDS mutL NC_009785.1 2113786 2115729 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(2113786..2115729) Streptococcus gordonii str. Challis substr. CH1 5598501 YP_001451302.1 CDS SGO_2054 NC_009785.1 2115914 2116354 D identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein 2115914..2116354 Streptococcus gordonii str. Challis substr. CH1 5597759 YP_001451303.1 CDS SGO_2055 NC_009785.1 2116351 2116821 D hypothetical protein 2116351..2116821 Streptococcus gordonii str. Challis substr. CH1 5598044 YP_001451304.1 CDS mutS NC_009785.1 2116870 2119413 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(2116870..2119413) Streptococcus gordonii str. Challis substr. CH1 5599388 YP_001451305.1 CDS argR NC_009785.1 2119592 2120029 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529; arginine repressor complement(2119592..2120029) Streptococcus gordonii str. Challis substr. CH1 5598369 YP_001451306.1 CDS argS NC_009785.1 2120158 2121846 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2120158..2121846 Streptococcus gordonii str. Challis substr. CH1 5599182 YP_001451307.1 CDS SGO_2059 NC_009785.1 2122075 2123010 R identified by match to protein family HMM PF02588; hypothetical protein complement(2122075..2123010) Streptococcus gordonii str. Challis substr. CH1 5599559 YP_001451308.1 CDS aspS NC_009785.1 2122997 2124751 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2122997..2124751) Streptococcus gordonii str. Challis substr. CH1 5599860 YP_001451309.1 CDS SGO_2061 NC_009785.1 2124883 2125092 R hypothetical protein complement(2124883..2125092) Streptococcus gordonii str. Challis substr. CH1 5598285 YP_001451310.1 CDS hisS NC_009785.1 2125182 2126462 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2125182..2126462) Streptococcus gordonii str. Challis substr. CH1 5599343 YP_001451311.1 CDS SGO_2063 NC_009785.1 2126643 2126984 D identified by match to protein family HMM PF01883; hypothetical protein 2126643..2126984 Streptococcus gordonii str. Challis substr. CH1 5599799 YP_001451312.1 CDS ilvD NC_009785.1 2127050 2128756 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(2127050..2128756) Streptococcus gordonii str. Challis substr. CH1 5598705 YP_001451313.1 CDS rpmF NC_009785.1 2128998 2129180 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2128998..2129180 Streptococcus gordonii str. Challis substr. CH1 5599056 YP_001451314.1 CDS rpmG NC_009785.1 2129196 2129345 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2129196..2129345 Streptococcus gordonii str. Challis substr. CH1 5599084 YP_001451315.1 CDS SGO_2067 NC_009785.1 2129825 2130610 R identified by match to protein family HMM PF06182; multidrug efflux membrane protein complement(2129825..2130610) Streptococcus gordonii str. Challis substr. CH1 5598599 YP_001451316.1 CDS SGO_2068 NC_009785.1 2130612 2131394 R identified by match to protein family HMM PF06182; hypothetical protein complement(2130612..2131394) Streptococcus gordonii str. Challis substr. CH1 5597862 YP_001451317.1 CDS SGO_2069 NC_009785.1 2131403 2132389 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2131403..2132389) Streptococcus gordonii str. Challis substr. CH1 5597999 YP_001451318.1 CDS SGO_2070 NC_009785.1 2134030 2134929 R hypothetical protein complement(2134030..2134929) Streptococcus gordonii str. Challis substr. CH1 5599811 YP_001451319.1 CDS SGO_2071 NC_009785.1 2135114 2136085 R hypothetical protein complement(2135114..2136085) Streptococcus gordonii str. Challis substr. CH1 5598760 YP_001451320.1 CDS SGO_2072 NC_009785.1 2137128 2137448 D hypothetical protein 2137128..2137448 Streptococcus gordonii str. Challis substr. CH1 5599034 YP_001451321.1 CDS SGO_2073 NC_009785.1 2137448 2138536 D identified by match to protein family HMM PF01580; FtsK/SpoIIIE family subfamily 2137448..2138536 Streptococcus gordonii str. Challis substr. CH1 5599366 YP_001451322.1 CDS SGO_2074 NC_009785.1 2138540 2139139 D hypothetical protein 2138540..2139139 Streptococcus gordonii str. Challis substr. CH1 5598468 YP_001451323.1 CDS SGO_2075 NC_009785.1 2139351 2139965 D identified by match to protein family HMM PF01719; plasmid replication protein 2139351..2139965 Streptococcus gordonii str. Challis substr. CH1 5597885 YP_001451324.1 CDS SGO_2076 NC_009785.1 2140291 2141556 D identified by match to protein family HMM PF00589; phage integrase family protein 2140291..2141556 Streptococcus gordonii str. Challis substr. CH1 5598551 YP_001451325.1 CDS SGO_2077 NC_009785.1 2142183 2142938 R hypothetical protein complement(2142183..2142938) Streptococcus gordonii str. Challis substr. CH1 5598866 YP_001451326.1 CDS SGO_2078 NC_009785.1 2142931 2143764 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2142931..2143764) Streptococcus gordonii str. Challis substr. CH1 5597960 YP_001451327.1 CDS SGO_2079 NC_009785.1 2143764 2144003 R hypothetical protein complement(2143764..2144003) Streptococcus gordonii str. Challis substr. CH1 5598776 YP_001451328.1 CDS SGO_2080 NC_009785.1 2144235 2145155 R identified by match to protein family HMM PF01381; transcription activator plcR complement(2144235..2145155) Streptococcus gordonii str. Challis substr. CH1 5598080 YP_001451329.1 CDS SGO_2081 NC_009785.1 2145513 2146205 D putative lipoprotein 2145513..2146205 Streptococcus gordonii str. Challis substr. CH1 5599295 YP_001451330.1 CDS SGO_2082 NC_009785.1 2146221 2146934 D putative lipoprotein 2146221..2146934 Streptococcus gordonii str. Challis substr. CH1 5597845 YP_001451331.1 CDS SGO_2083 NC_009785.1 2147186 2147782 D identified by match to protein family HMM PF00440; putative transcriptional regulator 2147186..2147782 Streptococcus gordonii str. Challis substr. CH1 5598552 YP_001451332.1 CDS SGO_2084 NC_009785.1 2147779 2148345 D identified by match to protein family HMM PF02525; quinone family NAD(P)H dehydrogenase 2147779..2148345 Streptococcus gordonii str. Challis substr. CH1 5598145 YP_001451333.1 CDS purB NC_009785.1 2148390 2149685 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2148390..2149685) Streptococcus gordonii str. Challis substr. CH1 5599753 YP_001451334.1 CDS SGO_2086 NC_009785.1 2149756 2151009 R hypothetical protein complement(2149756..2151009) Streptococcus gordonii str. Challis substr. CH1 5598959 YP_001451335.1 CDS SGO_2087 NC_009785.1 2151141 2151368 R hypothetical protein complement(2151141..2151368) Streptococcus gordonii str. Challis substr. CH1 5598614 YP_001451336.1 CDS SGO_2088 NC_009785.1 2151388 2151663 R hypothetical protein complement(2151388..2151663) Streptococcus gordonii str. Challis substr. CH1 5598940 YP_001451337.1 CDS purK NC_009785.1 2151653 2152744 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2151653..2152744) Streptococcus gordonii str. Challis substr. CH1 5598607 YP_001451338.1 CDS purE NC_009785.1 2152731 2153219 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2152731..2153219) Streptococcus gordonii str. Challis substr. CH1 5599434 YP_001451339.1 CDS SGO_2091 NC_009785.1 2153239 2154432 R hypothetical protein complement(2153239..2154432) Streptococcus gordonii str. Challis substr. CH1 5599815 YP_001451340.1 CDS purD NC_009785.1 2154492 2155751 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2154492..2155751) Streptococcus gordonii str. Challis substr. CH1 5599326 YP_001451341.1 CDS SGO_2093 NC_009785.1 2155845 2156009 R hypothetical protein complement(2155845..2156009) Streptococcus gordonii str. Challis substr. CH1 5598318 YP_001451342.1 CDS SGO_2094 NC_009785.1 2155996 2157645 D identified by match to protein family HMM PF05257; match to protein family HMM PF08481; general stress protein GSP-781 2155996..2157645 Streptococcus gordonii str. Challis substr. CH1 5599630 YP_001451343.1 CDS comX NC_009785.1 2157578 2157736 R ComX complement(2157578..2157736) Streptococcus gordonii str. Challis substr. CH1 5597819 YP_001451344.1 CDS comB NC_009785.1 2157764 2159122 R identified by match to protein family HMM TIGR01000; transport protein ComB complement(2157764..2159122) Streptococcus gordonii str. Challis substr. CH1 5599541 YP_001451345.1 CDS comA NC_009785.1 2159132 2161285 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193; ATP-binding transport protein ComA complement(2159132..2161285) Streptococcus gordonii str. Challis substr. CH1 5599780 YP_001451346.1 CDS rpsD NC_009785.1 2161739 2162350 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2161739..2162350) Streptococcus gordonii str. Challis substr. CH1 5599615 YP_001451347.1 CDS SGO_2099 NC_009785.1 2162616 2163338 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2162616..2163338) Streptococcus gordonii str. Challis substr. CH1 5599362 YP_001451348.1 CDS SGO_2100 NC_009785.1 2163338 2164336 R identified by match to protein family HMM PF09084; ABC transporter substrate-binding protein complement(2163338..2164336) Streptococcus gordonii str. Challis substr. CH1 5598516 YP_001451349.1 CDS SGO_2101 NC_009785.1 2164380 2165123 R identified by match to protein family HMM PF00528; permease complement(2164380..2165123) Streptococcus gordonii str. Challis substr. CH1 5599667 YP_001451350.1 CDS SGO_2102 NC_009785.1 2165095 2165385 R hypothetical protein complement(2165095..2165385) Streptococcus gordonii str. Challis substr. CH1 5599826 YP_001451351.1 CDS SGO_2103 NC_009785.1 2165725 2166384 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase complement(2165725..2166384) Streptococcus gordonii str. Challis substr. CH1 5598358 YP_001451352.1 CDS srtB NC_009785.1 2166463 2167320 R identified by match to protein family HMM TIGR03064; sortase complement(2166463..2167320) Streptococcus gordonii str. Challis substr. CH1 5599281 YP_001451353.1 CDS abpA NC_009785.1 2167409 2167996 R identified by similarity to GB:AAC38579.1; amylase-binding protein AbpA complement(2167409..2167996) Streptococcus gordonii str. Challis substr. CH1 5598407 YP_001451354.1 CDS SGO_2106 NC_009785.1 2168213 2169178 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2168213..2169178) Streptococcus gordonii str. Challis substr. CH1 5599003 YP_001451355.1 CDS SGO_2107 NC_009785.1 2169338 2170528 R identified by match to protein family HMM PF05257; general stress protein GSP-781 complement(2169338..2170528) Streptococcus gordonii str. Challis substr. CH1 5598201 YP_001451356.1 CDS mreC NC_009785.1 2171130 2171993 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2171130..2171993) Streptococcus gordonii str. Challis substr. CH1 5597751 YP_001451357.1 CDS comR2 NC_009785.1 2178847 2179329 R competence specific sigma factor ComR2 complement(2178847..2179329) Streptococcus gordonii str. Challis substr. CH1 5599844 YP_001451358.1 CDS SGO_2133 NC_009785.1 2179860 2181842 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein ftsH-like protein complement(2179860..2181842) Streptococcus gordonii str. Challis substr. CH1 5598338 YP_001451359.1 CDS hpt NC_009785.1 2181861 2182403 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(2181861..2182403) Streptococcus gordonii str. Challis substr. CH1 5598556 YP_001451360.1 CDS tilS NC_009785.1 2182408 2183685 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase complement(2182408..2183685) Streptococcus gordonii str. Challis substr. CH1 5599550 YP_001451361.1 CDS SGO_2136 NC_009785.1 2183682 2184962 R hypothetical protein complement(2183682..2184962) Streptococcus gordonii str. Challis substr. CH1 5599263 YP_001451362.1 CDS SGO_2137 NC_009785.1 2184962 2185078 R hypothetical protein complement(2184962..2185078) Streptococcus gordonii str. Challis substr. CH1 5599789 YP_001451363.1 CDS SGO_2138 NC_009785.1 2185081 2185449 R identified by match to protein family HMM PF04977; septum formation initiator family protein complement(2185081..2185449) Streptococcus gordonii str. Challis substr. CH1 5599539 YP_001451364.1 CDS SGO_2139 NC_009785.1 2185442 2185708 R identified by match to protein family HMM PF01479; S4 RNA-binding domain-containing protein complement(2185442..2185708) Streptococcus gordonii str. Challis substr. CH1 5599545 YP_001451365.1 CDS SGO_2140 NC_009785.1 2185774 2189277 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(2185774..2189277) Streptococcus gordonii str. Challis substr. CH1 5599105 YP_001451366.1 CDS pth NC_009785.1 2189270 2189839 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2189270..2189839) Streptococcus gordonii str. Challis substr. CH1 5599194 YP_001451367.1 CDS SGO_2142 NC_009785.1 2189913 2191028 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2189913..2191028) Streptococcus gordonii str. Challis substr. CH1 5597851 YP_001451368.1 CDS comE NC_009785.1 2191350 2192117 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; competence response regulator ComE complement(2191350..2192117) Streptococcus gordonii str. Challis substr. CH1 5599882 YP_001451369.1 CDS comD NC_009785.1 2192114 2193475 R identified by match to protein family HMM PF02518; histidine protein kinase ComD complement(2192114..2193475) Streptococcus gordonii str. Challis substr. CH1 5598689 YP_001451370.1 CDS comC NC_009785.1 2193491 2193643 R identified by match to protein family HMM PF03047; match to protein family HMM TIGR01847; competence factor-like protein ComC complement(2193491..2193643) Streptococcus gordonii str. Challis substr. CH1 5599586 YP_001451371.1 CDS SGO_2149 NC_009785.1 2193929 2194408 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2193929..2194408) Streptococcus gordonii str. Challis substr. CH1 5599857 YP_001451372.1 CDS degP NC_009785.1 2194602 2195795 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease 2194602..2195795 Streptococcus gordonii str. Challis substr. CH1 5599842 YP_001451373.1 CDS spo0J NC_009785.1 2195861 2196625 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome segregation protein 2195861..2196625 Streptococcus gordonii str. Challis substr. CH1 5597930 SGO_0195 tRNA SGO_0195 NC_009785.1 200849 200934 R tRNA-Leu complement(200849..200934) Streptococcus gordonii str. Challis substr. CH1 5598454 SGO_0612 tRNA SGO_0612 NC_009785.1 662763 662835 D tRNA-Ala 662763..662835 Streptococcus gordonii str. Challis substr. CH1 5599847 SGO_0615 tRNA SGO_0615 NC_009785.1 666182 666254 D tRNA-Val 666182..666254 Streptococcus gordonii str. Challis substr. CH1 5598463 SGO_0616 tRNA SGO_0616 NC_009785.1 666257 666329 D tRNA-Asp 666257..666329 Streptococcus gordonii str. Challis substr. CH1 5598746 SGO_0617 tRNA SGO_0617 NC_009785.1 666357 666429 D tRNA-Lys 666357..666429 Streptococcus gordonii str. Challis substr. CH1 5599855 SGO_0618 tRNA SGO_0618 NC_009785.1 666435 666516 D tRNA-Leu 666435..666516 Streptococcus gordonii str. Challis substr. CH1 5599854 SGO_0619 tRNA SGO_0619 NC_009785.1 666527 666599 D tRNA-Thr 666527..666599 Streptococcus gordonii str. Challis substr. CH1 5598886 SGO_0620 tRNA SGO_0620 NC_009785.1 666620 666691 D tRNA-Gly 666620..666691 Streptococcus gordonii str. Challis substr. CH1 5599633 SGO_0621 tRNA SGO_0621 NC_009785.1 666697 666782 D tRNA-Leu 666697..666782 Streptococcus gordonii str. Challis substr. CH1 5599148 SGO_0622 tRNA SGO_0622 NC_009785.1 666796 666869 D tRNA-Arg 666796..666869 Streptococcus gordonii str. Challis substr. CH1 5599722 SGO_0623 tRNA SGO_0623 NC_009785.1 666898 666971 D tRNA-Pro 666898..666971 Streptococcus gordonii str. Challis substr. CH1 5598857 SGO_0710 tRNA SGO_0710 NC_009785.1 753940 754012 D tRNA-Thr 753940..754012 Streptococcus gordonii str. Challis substr. CH1 5599476 SGO_1233 tRNA SGO_1233 NC_009785.1 1280210 1280281 R tRNA-Arg complement(1280210..1280281) Streptococcus gordonii str. Challis substr. CH1 5599332 SGO_1235 tRNA SGO_1235 NC_009785.1 1281736 1281807 R tRNA-Gln complement(1281736..1281807) Streptococcus gordonii str. Challis substr. CH1 5599783 SGO_1236 tRNA SGO_1236 NC_009785.1 1281858 1281938 R tRNA-Tyr complement(1281858..1281938) Streptococcus gordonii str. Challis substr. CH1 5598486 SGO_1270 tRNA SGO_1270 NC_009785.1 1316086 1316173 R tRNA-Ser complement(1316086..1316173) Streptococcus gordonii str. Challis substr. CH1 5599795 SGO_1382 tRNA SGO_1382 NC_009785.1 1430455 1430526 R tRNA-Arg complement(1430455..1430526) Streptococcus gordonii str. Challis substr. CH1 5598770 SGO_1702 tRNA SGO_1702 NC_009785.1 1765136 1765209 R tRNA-Asn complement(1765136..1765209) Streptococcus gordonii str. Challis substr. CH1 5598768 SGO_1705 tRNA SGO_1705 NC_009785.1 1768431 1768503 R tRNA-Ala complement(1768431..1768503) Streptococcus gordonii str. Challis substr. CH1 5599850 SGO_1741 tRNA SGO_1741 NC_009785.1 1808335 1808407 R tRNA-Thr complement(1808335..1808407) Streptococcus gordonii str. Challis substr. CH1 5599264 SGO_1746 tRNA SGO_1746 NC_009785.1 1812487 1812575 R tRNA-Leu complement(1812487..1812575) Streptococcus gordonii str. Challis substr. CH1 5599759 SGO_1829 tRNA SGO_1829 NC_009785.1 1906120 1906192 D tRNA-Lys 1906120..1906192 Streptococcus gordonii str. Challis substr. CH1 5599448 SGO_1941 tRNA SGO_1941 NC_009785.1 2016036 2016119 R tRNA-Leu complement(2016036..2016119) Streptococcus gordonii str. Challis substr. CH1 5598074 SGO_1942 tRNA SGO_1942 NC_009785.1 2016130 2016201 R tRNA-Gln complement(2016130..2016201) Streptococcus gordonii str. Challis substr. CH1 5599172 SGO_1943 tRNA SGO_1943 NC_009785.1 2016215 2016287 R tRNA-His complement(2016215..2016287) Streptococcus gordonii str. Challis substr. CH1 5599848 SGO_1944 tRNA SGO_1944 NC_009785.1 2016300 2016370 R tRNA-Trp complement(2016300..2016370) Streptococcus gordonii str. Challis substr. CH1 5599259 SGO_1945 tRNA SGO_1945 NC_009785.1 2016380 2016460 R tRNA-Tyr complement(2016380..2016460) Streptococcus gordonii str. Challis substr. CH1 5599261 SGO_1946 tRNA SGO_1946 NC_009785.1 2016479 2016551 R tRNA-Phe complement(2016479..2016551) Streptococcus gordonii str. Challis substr. CH1 5599851 SGO_1947 tRNA SGO_1947 NC_009785.1 2016555 2016628 R tRNA-Met complement(2016555..2016628) Streptococcus gordonii str. Challis substr. CH1 5599563 SGO_1948 tRNA SGO_1948 NC_009785.1 2016648 2016737 R tRNA-Ser complement(2016648..2016737) Streptococcus gordonii str. Challis substr. CH1 5599849 SGO_1949 tRNA SGO_1949 NC_009785.1 2016749 2016820 R tRNA-Glu complement(2016749..2016820) Streptococcus gordonii str. Challis substr. CH1 5599018 SGO_1950 tRNA SGO_1950 NC_009785.1 2016835 2016908 R tRNA-Ile complement(2016835..2016908) Streptococcus gordonii str. Challis substr. CH1 5599856 SGO_1951 tRNA SGO_1951 NC_009785.1 2016944 2017014 R tRNA-Gly complement(2016944..2017014) Streptococcus gordonii str. Challis substr. CH1 5599206 SGO_1952 tRNA SGO_1952 NC_009785.1 2017022 2017094 R tRNA-Val complement(2017022..2017094) Streptococcus gordonii str. Challis substr. CH1 5599478 SGO_1955 tRNA SGO_1955 NC_009785.1 2020441 2020513 R tRNA-Ala complement(2020441..2020513) Streptococcus gordonii str. Challis substr. CH1 5599833 SGO_2003 tRNA SGO_2003 NC_009785.1 2055255 2055325 D tRNA-Cys 2055255..2055325 Streptococcus gordonii str. Challis substr. CH1 5599243 SGO_2109 tRNA SGO_2109 NC_009785.1 2172010 2172100 R tRNA-Ser complement(2172010..2172100) Streptococcus gordonii str. Challis substr. CH1 5598738 SGO_2110 tRNA SGO_2110 NC_009785.1 2172111 2172184 R tRNA-Ile complement(2172111..2172184) Streptococcus gordonii str. Challis substr. CH1 5598062 SGO_2111 tRNA SGO_2111 NC_009785.1 2172220 2172290 R tRNA-Gly complement(2172220..2172290) Streptococcus gordonii str. Challis substr. CH1 5597994 SGO_2112 tRNA SGO_2112 NC_009785.1 2172304 2172376 R tRNA-Phe complement(2172304..2172376) Streptococcus gordonii str. Challis substr. CH1 5599554 SGO_2113 tRNA SGO_2113 NC_009785.1 2172380 2172453 R tRNA-Met complement(2172380..2172453) Streptococcus gordonii str. Challis substr. CH1 5598386 SGO_2114 tRNA SGO_2114 NC_009785.1 2172473 2172562 R tRNA-Ser complement(2172473..2172562) Streptococcus gordonii str. Challis substr. CH1 5599878 SGO_2115 tRNA SGO_2115 NC_009785.1 2172579 2172652 R tRNA-Met complement(2172579..2172652) Streptococcus gordonii str. Challis substr. CH1 5598350 SGO_2116 tRNA SGO_2116 NC_009785.1 2172666 2172739 R tRNA-Met complement(2172666..2172739) Streptococcus gordonii str. Challis substr. CH1 5597997 SGO_2117 tRNA SGO_2117 NC_009785.1 2172746 2172819 R tRNA-Pro complement(2172746..2172819) Streptococcus gordonii str. Challis substr. CH1 5599863 SGO_2118 tRNA SGO_2118 NC_009785.1 2172848 2172921 R tRNA-Arg complement(2172848..2172921) Streptococcus gordonii str. Challis substr. CH1 5598968 SGO_2119 tRNA SGO_2119 NC_009785.1 2172935 2173020 R tRNA-Leu complement(2172935..2173020) Streptococcus gordonii str. Challis substr. CH1 5599111 SGO_2120 tRNA SGO_2120 NC_009785.1 2173026 2173097 R tRNA-Gly complement(2173026..2173097) Streptococcus gordonii str. Challis substr. CH1 5598810 SGO_2121 tRNA SGO_2121 NC_009785.1 2173118 2173190 R tRNA-Thr complement(2173118..2173190) Streptococcus gordonii str. Challis substr. CH1 5599872 SGO_2122 tRNA SGO_2122 NC_009785.1 2173201 2173282 R tRNA-Leu complement(2173201..2173282) Streptococcus gordonii str. Challis substr. CH1 5598822 SGO_2123 tRNA SGO_2123 NC_009785.1 2173288 2173360 R tRNA-Lys complement(2173288..2173360) Streptococcus gordonii str. Challis substr. CH1 5598985 SGO_2124 tRNA SGO_2124 NC_009785.1 2173388 2173460 R tRNA-Asp complement(2173388..2173460) Streptococcus gordonii str. Challis substr. CH1 5599629 SGO_2125 tRNA SGO_2125 NC_009785.1 2173463 2173535 R tRNA-Val complement(2173463..2173535) Streptococcus gordonii str. Challis substr. CH1 5599840 SGO_2128 tRNA SGO_2128 NC_009785.1 2176882 2176954 R tRNA-Ala complement(2176882..2176954) Streptococcus gordonii str. Challis substr. CH1 5599836 SGO_2131 tRNA SGO_2131 NC_009785.1 2179533 2179606 R tRNA-Asn complement(2179533..2179606) Streptococcus gordonii str. Challis substr. CH1 5598085 SGO_2132 tRNA SGO_2132 NC_009785.1 2179612 2179683 R tRNA-Glu complement(2179612..2179683) Streptococcus gordonii str. Challis substr. CH1 5599711 SGO_2143 tRNA SGO_2143 NC_009785.1 2191138 2191211 R tRNA-Asn complement(2191138..2191211) Streptococcus gordonii str. Challis substr. CH1 5599536 SGO_2144 tRNA SGO_2144 NC_009785.1 2191217 2191288 R tRNA-Glu complement(2191217..2191288) Streptococcus gordonii str. Challis substr. CH1 5599865 SGO_2148 tRNA SGO_2148 NC_009785.1 2193813 2193886 R tRNA-Arg complement(2193813..2193886) Streptococcus gordonii str. Challis substr. CH1 5599564 SGO_0611 rRNA rrsA NC_009785.1 661162 662671 D 16S ribosomal RNA 661162..662671 Streptococcus gordonii str. Challis substr. CH1 5598306 SGO_0613 rRNA rrlA NC_009785.1 662956 665855 D 23S ribosomal RNA 662956..665855 Streptococcus gordonii str. Challis substr. CH1 5599543 SGO_0614 rRNA rrfA NC_009785.1 665936 666051 D 5S ribosomal RNA 665936..666051 Streptococcus gordonii str. Challis substr. CH1 5599839 SGO_1703 rRNA rrfB NC_009785.1 1765215 1765330 R 5S ribosomal RNA complement(1765215..1765330) Streptococcus gordonii str. Challis substr. CH1 5597748 SGO_1704 rRNA rrlB NC_009785.1 1765411 1768310 R 23S ribosomal RNA complement(1765411..1768310) Streptococcus gordonii str. Challis substr. CH1 5599200 SGO_1706 rRNA rrsB NC_009785.1 1768595 1770104 R 16S ribosomal RNA complement(1768595..1770104) Streptococcus gordonii str. Challis substr. CH1 5599706 SGO_1953 rRNA rrfC NC_009785.1 2017225 2017340 R 5S ribosomal RNA complement(2017225..2017340) Streptococcus gordonii str. Challis substr. CH1 5599621 SGO_1954 rRNA rrlC NC_009785.1 2017421 2020320 R 23S ribosomal RNA complement(2017421..2020320) Streptococcus gordonii str. Challis substr. CH1 5598005 SGO_1956 rRNA rrsC NC_009785.1 2020605 2022114 R 16S ribosomal RNA complement(2020605..2022114) Streptococcus gordonii str. Challis substr. CH1 5599320 SGO_2126 rRNA rrfD NC_009785.1 2173666 2173781 R 5S ribosomal RNA complement(2173666..2173781) Streptococcus gordonii str. Challis substr. CH1 5599606 SGO_2127 rRNA rrlD NC_009785.1 2173862 2176761 R 23S ribosomal RNA complement(2173862..2176761) Streptococcus gordonii str. Challis substr. CH1 5599837 SGO_2129 rRNA rrsD NC_009785.1 2177046 2178555 R 16S ribosomal RNA complement(2177046..2178555) Streptococcus gordonii str. Challis substr. CH1 5598773