-- dump date   	20140620_082951
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003445189.1	sigma factor
YP_003445190.1	COG2826, IS30 family
YP_003445200.1	COG2826, IS30 family
YP_003445204.1	COG5263, glucan-binding domain (YG repeat)
YP_003445205.1	COG5263, glucan-binding domain (YG repeat)
YP_003445206.1	COG3436, IS66 family
YP_003445207.1	COG3436, IS66 family
YP_003445209.1	COG2826, IS30 family
YP_003445213.1	COG3335
YP_003445216.1	CoA binding protein
YP_003445219.1	DNA repair protein Rec0
YP_003445222.1	COG5263, glucan-binding domain (YG repeat)
YP_003445224.1	COG5263, glucan-binding domain (YG repeat)
YP_003445225.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445226.1	pheromone receptor, comD-type
YP_003445227.1	response regulator of the LytR/AlgR family
YP_003445228.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445229.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445230.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445231.1	two TM-helices predicted
YP_003445232.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445233.1	two TM-helices predicted
YP_003445234.1	two TM-helices predicted
YP_003445242.1	pfam00583, acetyltransferase (GNAT) family.
YP_003445248.1	COG3464
YP_003445256.1	COG5263, glucan-binding domain (YG repeat)
YP_003445258.1	COG2820, similar to uridine phosphorylase
YP_003445259.1	COG0168, TrkG, Trk-type K+ transport system, membrane component
YP_003445260.1	COG0569, TrkA, K+ transport system, NAD-binding component
YP_003445261.1	COG0463, glycosyltransferases involved in cell wall biogenesis
YP_003445262.1	LPXTG motif, contains 4 repeats of 456-bp SSURE domain
YP_003445263.1	DNA-binding response regulator
YP_003445270.1	COG3668
YP_003445271.1	membrane protein, 1 TM-helic predicted
YP_003445272.1	COG3853, toxic anion resistance protein
YP_003445273.1	COG0640, cadmium efflux system transcriptional regulator
YP_003445277.1	COG2826, IS30 family
YP_003445293.1	5 TM helices predicted
YP_003445296.1	pfam02517
YP_003445297.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003445311.1	COG2826, IS30 family
YP_003445325.1	COG2071, predicted glutamine amidotransferases
YP_003445326.1	pfam01797
YP_003445331.1	transcriptional regulator, COPG family
YP_003445345.1	glutamylcysteine synthetase
YP_003445348.1	COG0546, phosphatase
YP_003445349.1	COG1388: LysM repeat; Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation
YP_003445351.1	COG5523, predicted integral membrane protein
YP_003445353.1	cd01840, esterase
YP_003445354.1	COG2826, IS30 family
YP_003445363.1	competence protein
YP_003445369.1	preprotein translocase subunit YidC1 (intracellular trafficking and secretion); COG0706
YP_003445370.1	COG1847, jag, predicted RNA-binding protein
YP_003445378.1	transcriptional regulator, BglG family
YP_003445381.1	COG1862
YP_003445382.1	phosphotyrosine protein phosphatase
YP_003445386.1	COG0564, RluA, pseudouridylate synthases, 23S RNA-specific
YP_003445388.1	COG2826, IS30 family
YP_003445393.1	COG2826, IS30 family
YP_003445397.1	ABC transporter permease
YP_003445399.1	DNA-binding response regulator
YP_003445400.1	COG2826, IS30 family
YP_003445407.1	COG1187, 16S_rRNA pseudouridylate synthase and related pseudouridylate synthases
YP_003445409.1	pfam01610
YP_003445411.1	membrane bound lipoprotein
YP_003445418.1	pfam02517
YP_003445427.1	universal stress protein family
YP_003445432.1	COG0531
YP_003445438.1	COG1564, THI80
YP_003445441.1	COG2826, IS30 family
YP_003445450.1	preprotein translocase subunit YidC2 (intracellular trafficking and secretion); COG0706
YP_003445456.1	COG3480, SdrC, predicted secreted protein containing a PDZ domain
YP_003445460.1	hemolysins and related proteins containing CBS domains [General function prediction only]; COG1253; Domain of unknown function DUF21. This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to a protein, which does not contain this domain.
YP_003445466.1	COG2984, ABC-type transport system
YP_003445467.1	COG 4120
YP_003445478.1	COG1187, 16S_rRNA pseudouridylate synthase and related pseudouridylate synthases
YP_003445484.1	LPXTG motif
YP_003445495.1	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
YP_003445498.1	COG3666
YP_003445500.1	HIT family protein
YP_003445501.1	This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins.
YP_003445506.1	Peptide pheromone receptor, ComD type
YP_003445508.1	two TM-helices predicted
YP_003445510.1	four TM-helices predicted
YP_003445511.1	two TM-helices predicted
YP_003445512.1	pfam02517
YP_003445514.1	COG0220
YP_003445516.1	COG0195
YP_003445518.1	pfam01248
YP_003445525.1	COG1204, superfamily II helicase
YP_003445527.1	COG1670, RimL, acetyltransferases, including N-acetylases of ribosomal proteins
YP_003445528.1	COG0703, shikimate kinase
YP_003445529.1	COG0525, valyl-tRNA synthetase
YP_003445531.1	COG0326, molecular chaperone, HSP90 family
YP_003445533.1	COG2184
YP_003445534.1	COG1061
YP_003445538.1	COG0577
YP_003445539.1	COG2826, IS30 family
YP_003445541.1	COG0504, COG2071
YP_003445542.1	COG5263, glucan-binding domain (YG repeat)
YP_003445544.1	COG0526: thiol-disulfide isomerase and thioredoxins
YP_003445552.1	phage associated
YP_003445553.1	phage associated
YP_003445561.1	COG0593
YP_003445564.1	pfam09250, Prim-Pol, bifunctional DNA primase/polymerase
YP_003445565.1	COG3378, ATPase, phage associated
YP_003445566.1	phage associated
YP_003445571.1	phage associated
YP_003445572.1	phage associated
YP_003445579.1	pfam02452
YP_003445584.1	COG2766
YP_003445585.1	COG5585
YP_003445587.1	phage associated
YP_003445588.1	phage associated
YP_003445589.1	phage associated
YP_003445591.1	COG0840
YP_003445603.1	COG1652
YP_003445607.1	COG3299
YP_003445618.1	COG5263, glucan-binding domain (YG repeat)
YP_003445619.1	COG3666
YP_003445625.1	COG1396
YP_003445626.1	COG3557
YP_003445629.1	COG0340.1
YP_003445630.1	COG2826, IS30 family
YP_003445631.1	COG3307, RfaL, lipid A core - O-antigen ligase and related enzymes
YP_003445640.1	COG2050: uncharacterized protein, possibly involved in aromatic compounds catabolism
YP_003445645.1	pfam00860
YP_003445649.1	COG1266
YP_003445650.1	COG0640
YP_003445651.1	COG5658, predicted integral membrane protein, lipoprotein signature
YP_003445653.1	COG2323
YP_003445654.1	MsbA is an ABC transporter, closely related to eukaryotic MDR proteins
YP_003445656.1	COG2148, WcaJ, sugar transferases involved in lipopolysaccharide synthesis
YP_003445657.1	predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis COG0399
YP_003445666.1	COG1989
YP_003445667.1	COG1670, acetyltransferases, including N-acetylases of ribosomal proteins
YP_003445673.1	pfam05043, Mga, M protein trans-acting positive regulator (MGA). Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions.
YP_003445675.1	COG0604
YP_003445676.1	COG1959
YP_003445682.1	COG1164
YP_003445685.1	cd00333, MIP, Major intrinsic protein (MIP) superfamily
YP_003445686.1	COG0780, enzyme related to GTP cyclohydrolase I
YP_003445687.1	Coenzyme PQQ synthesis homologue
YP_003445688.1	COG0720
YP_003445693.1	COG1380
YP_003445694.1	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance
YP_003445695.1	COG1132
YP_003445697.1	COG1131
YP_003445698.1	HTH motif
YP_003445699.1	ATP cone domain protein
YP_003445700.1	COG3611
YP_003445702.1	COG0778
YP_003445706.1	COG0653
YP_003445709.1	COG0736
YP_003445713.1	pfam02371
YP_003445714.1	pfam 01548
YP_003445716.1	COG1670, acetyltransferase, GNAT family
YP_003445718.1	LPXTG motif
YP_003445728.1	plasmid stabilization system protein superfamily, RelE/ParE family protein
YP_003445729.1	pfam01380, SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway
YP_003445735.1	COG2826, IS30 family
YP_003445736.1	COG2826, IS30 family
YP_003445739.1	COG0325, enzyme with a TIM-barrel fold
YP_003445742.1	COG2302, contains S4-like domain
YP_003445748.1	COG1136
YP_003445754.1	10 TM helices predicted
YP_003445756.1	COG3590, metalloendopeptidase
YP_003445757.1	COG0491, Zn-dependent hydrolases
YP_003445763.1	COG0622, predicted phosphoesterase
YP_003445764.1	COG1959, predicted transcriptional regulator, Rrf2 family protein
YP_003445766.1	DNA-binding response regulator
YP_003445769.1	7 TM helices
YP_003445779.1	COG2826, IS30 family
YP_003445780.1	COG0474
YP_003445781.1	COG2384, SAM-dependent methyltransferase
YP_003445783.1	DadA, glycine D-amino acid oxidases
YP_003445784.1	DadA, glycine D-amino acid oxidases
YP_003445786.1	COG0463, glycosyltransferases involved in cell wall biogenesis
YP_003445787.1	COG1141
YP_003445797.1	COG3442, glutamine amidotransferase
YP_003445800.1	pfam00909
YP_003445802.1	COG0513
YP_003445803.1	COG2826, IS30 family
YP_003445805.1	COG1335
YP_003445806.1	COG4591, ABC-type transport system, involved in lipoprotein release
YP_003445809.1	DNA-binding response regulator
YP_003445813.1	plasmid stabilization system antitoxin protein
YP_003445814.1	COG1185: polyribonucleotide nucleotidyltransferase
YP_003445816.1	pfam00300
YP_003445819.1	5 TM helices
YP_003445820.1	LPXTG motif
YP_003445824.1	COG0500
YP_003445826.1	COG0025
YP_003445831.1	COG1493, serine kinase of the HPr protein, regulates carbohydrate metabolism
YP_003445839.1	smart00530, HTH_XRE, helix-turn-helix XRE-family like proteins
YP_003445840.1	COG5263, glucan binding domain (YG repeat)
YP_003445841.1	COG5263, glucan binding domain (YG repeat)
YP_003445842.1	membrane bound lipoprotein
YP_003445843.1	cd03032, ArsC_Spx, arsenate reductase (ArsC) family, Spx subfamily
YP_003445845.1	cd01637, IMPase_like, inositol-monophosphatase-like domains
YP_003445846.1	COG0144, sun, tRNA and rRNA cytosine-C5-methylases [
YP_003445847.1	COG0226
YP_003445853.1	COG0834
YP_003445854.1	COG1167, ARO8, transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family)
YP_003445859.1	COG1176
YP_003445860.1	COG1177
YP_003445862.1	COG2826, IS30 family
YP_003445868.1	COG1368
YP_003445876.1	COG1704
YP_003445881.1	COG1316, LytR
YP_003445882.1	pfam04991
YP_003445883.1	COG0438, RfaG; pfam00534, glycosyl transferases group 1
YP_003445884.1	pfam00535, glycosyl transferase group 2
YP_003445887.1	pfam05389, negative regulator of genetic competence in Bacillus subtilis
YP_003445891.1	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components
YP_003445892.1	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components
YP_003445894.1	COG2826, IS30 family
YP_003445895.1	COG2826, IS30 family
YP_003445896.1	COG2826, IS30 family
YP_003445897.1	COG2826, IS30 family
YP_003445901.1	pfam06970, RepA_N, replication initiator protein A (RepA) N-terminus
YP_003445904.1	COG1393, ArsC, Arsenate reductase and related proteins, glutaredoxin family
YP_003445906.1	pfam02517
YP_003445907.1	COG1737, RpiR
YP_003445910.1	COG0591, PutP, Na+/proline symporter; pfam00474, SSF
YP_003445912.1	pfam01408, GFO_IDH_MocA, oxidoreductase family; COG0673, MviM, predicted dehydrogenases and related proteins
YP_003445913.1	COG1940, NagC, transcriptional regulator/sugar kinase; pfam00480, ROK
YP_003445915.1	COG1269, NtpI, archaeal/vacuolar-type H+-ATPase subunit I
YP_003445916.1	COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K
YP_003445918.1	COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C
YP_003445919.1	COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F
YP_003445920.1	COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A
YP_003445921.1	COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B
YP_003445922.1	pfam01813, ATP-synt_D, ATP synthase subunit D
YP_003445923.1	pfam01797
YP_003445924.1	pfam01797
YP_003445925.1	LPXTG motif
YP_003445926.1	pfam01797
YP_003445927.1	pfam01797
YP_003445928.1	pfam01797
YP_003445929.1	COG0334, GdhA, glutamate dehydrogenase/leucine dehydrogenase
YP_003445930.1	COG0167, PyrD, dihydroorotate dehydrogenase; pfam01180, DHO_dh, dihydroorotate dehydrogenase
YP_003445932.1	COG0605, SodA, superoxide dismutase
YP_003445934.1	COG0820, predicted Fe-S-cluster redox enzyme
YP_003445935.1	COG4767, VanZ, glycopeptide antibiotics resistance protein; pfam04892, VanZ like family
YP_003445936.1	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains
YP_003445937.1	cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases
YP_003445942.1	COG1837, predicted RNA-binding protein (contains KH domain)
YP_003445944.1	COG0596, MhpC, predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); pfam00561, Abhydrolase_1, alpha/beta hydrolase fold
YP_003445946.1	pfam01746, tRNA_m1G_MT, tRNA (Guanine-N(1)-)-methyltransferase
YP_003445947.1	COG1328, NrdD, oxygen-sensitive ribonucleoside-triphosphate reductase; pfam03477, ATP-cone, ATP cone domain
YP_003445952.1	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component
YP_003445955.1	COG0845, efflux transporter
YP_003445956.1	COG1136, ABC-type antimicrobial peptide transport system, ATPase component
YP_003445957.1	COG0577, ABC-type antimicrobial peptide transport system, permease component
YP_003445959.1	COG4989, predicted oxidoreductase
YP_003445961.1	pfam00106, adh_short, short chain dehydrogenase; COG1028, FabG
YP_003445963.1	COG1247, sortase and related acyltransferases
YP_003445964.1	COG1437, CyaB, adenylate cyclase
YP_003445967.1	transcriptional regulatory protein
YP_003445968.1	Sensor protein CiaH histidine kinase
YP_003445970.1	COG0826, collagenase and related proteases
YP_003445971.1	COG1199, DinG, Rad3-related DNA helicases
YP_003445972.1	pfam01098, FTSW_RODA_SPOVE, cell cycle protein
YP_003445973.1	intracellular protease/amidase
YP_003445974.1	COG2826, IS30 family
YP_003445975.1	COG0546, Gph, predicted phosphatase
YP_003445977.1	COG4477, EzrA
YP_003445978.1	pfam00583, Acetyltransf_1, acetyltransferase (GNAT) family
YP_003445980.1	pfam00293, NUDIX; COG0494, MutT
YP_003445983.1	COG0765, HisM, ABC-type amino acid transport system, permease component
YP_003445984.1	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component
YP_003445985.1	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
YP_003445987.1	COG0063, predicted sugar kinase
YP_003445990.1	COG1015
YP_003445993.1	COG0038
YP_003445994.1	COG0518, GuaA, GMP synthase - glutamine amidotransferase domain
YP_003445995.1	COG0813
YP_003445999.1	COG1072, CoaA
YP_003446003.1	COG2813, RsmC
YP_003446004.1	COG0213, DeoA, thymidine phosphorylase
YP_003446005.1	COG0274, DeoC
YP_003446007.1	extracellular protein, signal peptide type I
YP_003446008.1	COG3845, ABC-type uncharacterized transport system, ATPase components
YP_003446009.1	COG4603, COG4603, ABC-type uncharacterized transport system, permease component
YP_003446010.1	COG4603, ABC-type uncharacterized transport system, permease component
YP_003446011.1	COG0344, predicted membrane protein
YP_003446018.1	pfam00583, Acetyltransf_1, acetyltransferase (GNAT) family
YP_003446021.1	COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component; pfam00496, SBP_bac_5, bacterial extracellular solute-binding proteins
YP_003446024.1	COG1956, COG1956, GAF domain-containing protein
YP_003446027.1	COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component
YP_003446029.1	COG0520, SufS-like
YP_003446033.1	COG0628, PerM, predicted permease
YP_003446035.1	COG0513, SrmB, superfamily II DNA and RNA helicase
YP_003446036.1	pfam01408
YP_003446037.1	COG2826, IS30 family
YP_003446041.1	COG2826, IS30 family
YP_003446042.1	COG0583, LysR
YP_003446044.1	COG0564, RluA, pseudouridylate synthases, 23S RNA-specific
YP_003446045.1	COG2333, ComEC, predicted hydrolase (metallo-beta-lactamase superfamily)
YP_003446046.1	COG2333, ComEC, predicted hydrolase (metallo-beta-lactamase superfamily)
YP_003446053.1	COG0313
YP_003446054.1	COG0270, Dcm
YP_003446056.1	COG0270, Dcm
YP_003446060.1	COG1206
YP_003446065.1	COG1702, PhoH, predicted ATPase
YP_003446066.1	COG1670
YP_003446069.1	COG1131, CcmA, ABC-type multidrug transport system, ATPase component
YP_003446074.1	COG0346, GloA, lactoylglutathione lyase and related lyases
YP_003446075.1	COG2826, IS30 family
YP_003446078.1	COG5263, glucan-binding domain (YG repeat)
YP_003446091.1	LPXTG motif
YP_003446094.1	COG4122, predicted O-methyltransferase
YP_003446095.1	Parvulin-like peptidyl-prolyl isomerase (posttranslational modification, protein turnover, chaperones), lipoprotein
YP_003446098.1	COG2826, IS30 family
YP_003446099.1	COG2826, IS30 family
YP_003446100.1	COG2984, ABC-type uncharacterized transport system
YP_003446101.1	COG4120, ABC-type uncharacterized transport system, permease component
YP_003446102.1	COG1101, ABC-type uncharacterized transport system, ATPase component
YP_003446108.1	COG1983, PspC
YP_003446110.1	COG0536, Obg, predicted GTPase
YP_003446114.1	LPXTG motif
YP_003446121.1	COG2116, FocA
YP_003446129.1	COG1189, predicted rRNA methylase
YP_003446130.1	COG1438, ArgR family protein
YP_003446134.1	COG1762, PtsN, mannitol/fructose-specific IIA domain
YP_003446135.1	COG3414, SgaB, galactitol-specific IIB
YP_003446136.1	COG3775, GatC, galactitol-specific IIC component
YP_003446137.1	COG2017, GalM, galactose mutarotase and related enzymes
YP_003446142.1	COG0698, RpiB, ribose 5-phosphate isomerase RpiB
YP_003446143.1	COG0698, RpiB, ribose 5-phosphate isomerase RpiB
YP_003446144.1	COG1959, predicted transcriptional regulator
YP_003446161.1	COG2376, DAK1, dihydroxyacetone kinase
YP_003446163.1	COG2376, DAK1
YP_003446164.1	COG2376, DAK1
YP_003446166.1	COG1011
YP_003446168.1	7,8-dihydro-8-oxoguanine-triphosphatase; 8-oxo-dGTPase; dGTP pyrophosphohydrolase
YP_003446170.1	COG0534, NorM
YP_003446171.1	cd00798, INT_XerDC, XerD and XerC integrases
YP_003446174.1	COG0164, RnhB, ribonuclease HII
YP_003446175.1	COG1161, predicted GTPases
YP_003446176.1	LPXTG motif
YP_003446178.1	COG1074, RecB, ATP-dependent exoDNAse, beta subunit, (contains helicase and exonuclease domains)
YP_003446179.1	COG3857, AddB, ATP-dependent nuclease
YP_003446180.1	COG2826, IS30 family
YP_003446181.1	COG0561, Cof, predicted hydrolases of the HAD superfamily
YP_003446182.1	COG1131, CcmA, ABC-type multidrug transport system, ATPase component
YP_003446184.1	COG0642, signal transduction histidine kinase
YP_003446185.1	COG0745, OmpR, response regulator
YP_003446186.1	cd02432, Nodulin-21_like_1
YP_003446187.1	pfam02687, FtsX, predicted permease
YP_003446188.1	COG1136, ABC-type antimicrobial peptide transport system, ATPase component
YP_003446191.1	COG1983, stress-responsive transcriptional regulator
YP_003446193.1	COG2183, Tex, transcriptional accessory protein
YP_003446196.1	COG0701, predicted permease
YP_003446197.1	COG3689, predicted membrane protein
YP_003446199.1	COG2826, IS30 family
YP_003446202.1	COG0210, UvrD, superfamily I DNA and RNA helicases
YP_003446204.1	COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
YP_003446206.1	COG2378, predicted transcriptional regulator
YP_003446207.1	fam07693, KAP_NTPase, KAP family P-loop domain.
YP_003446208.1	COG0560, SerB, phosphoserine phosphatase
YP_003446209.1	COG0317, SpoT, guanosine polyphosphate pyrophosphohydrolase/synthetase
YP_003446213.1	pfam06414, Zeta toxin
YP_003446214.1	pfam01381, Helix-turn-helix
YP_003446217.1	pfam00781, diacylglycerol kinase catalytic domain
YP_003446218.1	pfam03747, ADP-ribosylglycohydrolase
YP_003446219.1	COG0596, predicted hydrolases or acyltransferases
YP_003446220.1	COG4912, predicted DNA alkylation repair enzyme
YP_003446222.1	COG3340, peptidase E
YP_003446223.1	pfam00583, acetyltransferase (GNAT) family
YP_003446231.1	COG2265, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
YP_003446232.1	COG4086, excreted protein, signal peptide type I
YP_003446233.1	PECACE domain
YP_003446236.1	pfam00583, acetyltransferase (GNAT) family
YP_003446237.1	COG0009, translation factor (SUA5)
YP_003446240.1	pfam00583, acetyltransferase (GNAT) family
YP_003446246.1	COG4708, predicted membrane protein
YP_003446248.1	pfam01741
YP_003446251.1	COG3344, retron-type reverse transcriptase
YP_003446252.1	surface protein
YP_003446253.1	similar to histidine triad protein of group A streptococci
YP_003446254.1	These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion, signal peptide type I, excreted protein
YP_003446255.1	COG0531
YP_003446256.1	COG0526, thiol-disulfide isomerase and thioredoxins
YP_003446257.1	COG0785
YP_003446258.1	COG3293
YP_003446260.1	COG0785
YP_003446261.1	pfam00216, bacterial DNA-binding protein
YP_003446262.1	COG1307, uncharacterized protein, DegV family
YP_003446263.1	COG1284
YP_003446264.1	COG0196, FAD synthase
YP_003446266.1	COG4109, predicted transcriptional regulator containing CBS domains
YP_003446267.1	COG1670, acetyltransferases, including N-acetylases of ribosomal proteins
YP_003446269.1	COG2826, IS30 family
YP_003446271.1	COG5506, uncharacterized
YP_003446275.1	COG0448, glucose-1-phosphate adenylyltransferase
YP_003446278.1	COG2826, IS30 family
YP_003446282.1	cd00093, helix-turn-helix XRE-family
YP_003446283.1	COG0488, ATPase components of ABC transporters with duplicated ATPase domains
YP_003446286.1	pfam00753, metallo-beta-lactamase superfamily
YP_003446287.1	COG5002, VicK, signal transduction histidine kinase
YP_003446288.1	COG0745, response regulator, OmpR family
YP_003446289.1	COG1194
YP_003446290.1	COG0280
YP_003446291.1	COG0564, RluA, pseudouridylate synthases, 23S RNA-specific
YP_003446292.1	COG0061
YP_003446294.1	COG4116, uncharacterized protein
YP_003446296.1	COG1104, cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
YP_003446299.1	COG2344, AT-rich DNA-binding protein
YP_003446300.1	COG2071
YP_003446301.1	COG2003
YP_003446304.1	pfam04127, DNA / pantothenate metabolism flavoprotein
YP_003446305.1	COG0452, phosphopantothenoylcysteine synthetase/decarboxylase
YP_003446306.1	COG4684
YP_003446308.1	pfam02829, 3H domain, three histidine residues
YP_003446309.1	COG1051, ADP-ribose pyrophosphatase
YP_003446310.1	pfam00583, acetyltransferase (GNAT) family
YP_003446311.1	COG1670
YP_003446313.1	pfam02517, CAAX amino terminal protease family
YP_003446314.1	COG0765
YP_003446315.1	COG1126
YP_003446317.1	COG0552, signal recognition particle GTPase
YP_003446318.1	COG0561, predicted hydrolases of the HAD superfamily
YP_003446319.1	COG0561, predicted hydrolases of the HAD superfamily
YP_003446320.1	pfam02483
YP_003446323.1	COG0009, translation factor
YP_003446326.1	pfam06961
YP_003446329.1	pfam04237
YP_003446331.1	COG2832
YP_003446333.1	COG0758, predicted Rossmann fold nucleotide-binding protein involved in DNA uptake, Smf family
YP_003446337.1	COG1063, threonine dehydrogenase and related Zn-dependent dehydrogenases
YP_003446338.1	COG1211
YP_003446339.1	COG2244, Membrane protein involved in the export of O-antigen and teichoic acid
YP_003446340.1	pfam04991
YP_003446341.1	pfam04991
YP_003446342.1	COG1914, Mn2+ and Fe2+ transporters, NRAMP family
YP_003446346.1	COG2065
YP_003446348.1	pfam02620
YP_003446350.1	COG0488, ATPase components of ABC transporters with duplicated ATPase domains
YP_003446351.1	COG0501, Zn-dependent protease with chaperone function
YP_003446352.1	pfam04011
YP_003446353.1	COG0357, predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
YP_003446357.1	pfam04851
YP_003446359.1	COG2189
YP_003446361.1	cd00079
YP_003446362.1	COG0541, signal recognition particle GTPase
YP_003446363.1	pfam04297, helix-turn-helix protein
YP_003446364.1	COG4506
YP_003446365.1	COG1078, phosphohydrolase, HD superfamily
YP_003446366.1	COG0561, predicted hydrolase, HAD superfamily
YP_003446367.1	COG2211, Na+/melibiose symporter and related transporters
YP_003446368.1	COG1437, adenylate cyclase, class 2
YP_003446369.1	cd00093, Helix-turn-helix, XRE-family-like
YP_003446370.1	cd01189, phiLC3 phage and phage-related integrases
YP_003446371.1	COG2361
YP_003446372.1	COG1669, nucleotidyltransferase domain
YP_003446373.1	COG3077, DNA-damage-inducible protein, RelB domain
YP_003446375.1	COG0239, integral membrane protein possibly involved in chromosome condensation
YP_003446376.1	COG0239, Integral membrane protein possibly involved in chromosome condensation
YP_003446377.1	COG1605, Chorismate mutase
YP_003446378.1	COG0716
YP_003446379.1	COG0618, Exopolyphosphatase-related protein, DHH family
YP_003446384.1	pfam00902
YP_003446385.1	COG0672, high-affinity Fe2+/Pb2+ permease, membrane protein
YP_003446386.1	COG2837, predicted iron-dependent peroxidase, twin arginine translocation signal peptide
YP_003446387.1	COG2822
YP_003446388.1	pfam00239, resolvase, N terminal domain
YP_003446389.1	COG5263, glucan-binding domain (YG repeat)
YP_003446392.1	COG0718
YP_003446393.1	COG4781, Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase
YP_003446398.1	pfam00293, NUDIX domain
YP_003446400.1	COG3757, lyzozyme M1 (1,4-beta-N-acetylmuramidase)
YP_003446401.1	COG2035, predicted membrane protein
YP_003446402.1	pfam04073, prolyl-tRNA synthetases associated domain
YP_003446405.1	COG0834
YP_003446406.1	COG1126
YP_003446407.1	COG0765
YP_003446408.1	cd00189, tetratricopeptide repeat domain
YP_003446409.1	COG0628, predicted permease
YP_003446410.1	COG4166, OppA, ABC-type oligopeptide transport system
YP_003446411.1	COG2826, IS30 family
YP_003446413.1	COG3464
YP_003446414.1	LPXTG motif
YP_003446415.1	COG2826, IS30 family
YP_003446424.1	pfam01136, peptidase family U32
YP_003446425.1	LPXTG motif
YP_003446426.1	COG3593, predicted ATP-dependent endonuclease of the OLD family
YP_003446427.1	COG0210, superfamily I DNA and RNA helicase
YP_003446428.1	pfam06125
YP_003446429.1	pfam06125
YP_003446431.1	pfam01580, FtsK/SpoIIIE family
YP_003446432.1	COG2946, phage replication protein, helix-turn-helix
YP_003446435.1	pfam07275, antirestriction protein (ArdA)
YP_003446438.1	COG0433, predicted ATPase
YP_003446439.1	pfam01490
YP_003446440.1	pfam00877, NlpC/P60 family, PECACE domain
YP_003446442.1	COG0480, ribosomal protection
YP_003446444.1	pfam01381, Helix-turn-helix
YP_003446446.1	COG1595, DNA-directed RNA polymerase specialized sigma, sigma24 homolog
YP_003446449.1	cd01189, phiLC3 phage and phage-related integrases
YP_003446451.1	COG2188, transcriptional regulator, PhnF family
YP_003446452.1	pfam00892, Integral membrane protein
YP_003446453.1	pfam00144, beta-lactamase
YP_003446455.1	cd00333, Major intrinsic protein (MIP) superfamily
YP_003446456.1	COG5263, glucan-binding domain (YG repeat)
YP_003446457.1	cd00093, Helix-turn-helix, XRE-family-like
YP_003446460.1	COG2819, predicted hydrolase of the alpha/beta superfamily
YP_003446461.1	COG0301, thiamine biosynthesis ATP pyrophosphatase
YP_003446462.1	COG1104, cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
YP_003446464.1	COG1674, DNA segregation ATPase
YP_003446467.1	COG1349, transcriptional regulator of sugar metabolism
YP_003446468.1	COG3666
YP_003446469.1	membrane bound lipoprotein
YP_003446470.1	COG2963
YP_003446471.1	pfam00665
YP_003446472.1	similar to S. pneumoniae bacteriophage EJ-1
YP_003446473.1	COG2932, predicted transcriptional regulator
YP_003446475.1	similar to orf203 of S. thermophilus bacteriophage Sfi21, immunity region
YP_003446476.1	COG2755, lysophospholipase L1 and related esterases
YP_003446477.1	COG0561, predicted hydrolase, HAD superfamily
YP_003446478.1	COG2843, enzyme of poly-gamma-glutamate biosynthesis
YP_003446483.1	COG1126, ABC-type polar amino acid transport system, ATPase component
YP_003446484.1	COG0765, ABC-type amino acid transport system, permease component
YP_003446485.1	cd03036
YP_003446489.1	COG1272
YP_003446490.1	COG0311
YP_003446491.1	COG0214
YP_003446494.1	COG0431, predicted flavoprotein
YP_003446495.1	COG2461, uncharacterized
YP_003446496.1	pfam05979, bacterial protein of unknown function
YP_003446500.1	LPXTG motif; pfam00082, subtilase family
YP_003446504.1	COG0513, DNA and RNA helicase, superfamily II
YP_003446505.1	COG3568, metal-dependent hydrolase
YP_003446507.1	COG2826, IS30 family
YP_003446511.1	COG2826, IS30 family
YP_003446512.1	d04585, CBS pair ACT assoc2, this cd contains two tandem repeats of the cystathionin
YP_003446521.1	COG2826, IS30 family
YP_003446523.1	COG1309, AcrR family
YP_003446524.1	COG1307, uncharacterized protein in bacteria, DegV family
YP_003446525.1	COG2081
YP_003446527.1	cd01106, Helix-turn-helix transcription regulator
YP_003446528.1	COG0733, SNF family
YP_003446531.1	COG1132, ABC-type multidrug transport system, ATPase and permease components
YP_003446534.1	COG0474, Cation transport ATPase
YP_003446535.1	COG4633, uncharacterized protein in bacteria
YP_003446536.1	COG3682
YP_003446538.1	COG0765
YP_003446539.1	COG0765
YP_003446540.1	COG1126
YP_003446541.1	COG0834
YP_003446542.1	COG1131, ABC-type multidrug transport system, ATPase component
YP_003446546.1	excreted protein, signal peptide type I
YP_003446547.1	COG0461
YP_003446548.1	COG0284
YP_003446549.1	COG1589, ftsQ protein
YP_003446550.1	COG0707
YP_003446551.1	COG0771
YP_003446554.1	COG3464
YP_003446555.1	COG1217
YP_003446556.1	COG1187, 16S_rRNA pseudouridylate synthase and related pseudouridylate synthases
YP_003446557.1	COG0607
YP_003446559.1	COG2197, response regulator of regulon involved in salavaricin-like lantibiotics
YP_003446560.1	COG4585, histidine kinase of regulon involved in salavaricin-like lantibiotics
YP_003446561.1	ABC-type antimicrobial peptide transport system
YP_003446562.1	COG1136
YP_003446563.1	COG0583, regulation of capsule expression
YP_003446565.1	COG0464
YP_003446569.1	COG5263, glucan binding domain (YG repeat)
YP_003446572.1	COG1396
YP_003446573.1	COG0300, DltE, short-chain dehydrogenases of various substrate specificities
YP_003446574.1	COG1234, ElaC, metal-dependent hydrolases of the beta-lactamase superfamily III
YP_003446576.1	COG2262, predicted GTPase
YP_003446577.1	COG0324
YP_003446580.1	COG1940
YP_003446581.1	COG5263, glucan binding domain (YG repeat), Excalibur-domain for Ca++-binding
YP_003446584.1	LPXTG motif
YP_003446586.1	COG2972
YP_003446587.1	COG4753
YP_003446589.1	COG2143, thioredoxin-related protein
YP_003446590.1	COG0785
YP_003446592.1	COG1670
YP_003446593.1	unknown EC_number=6.3._._; COG0171
YP_003446594.1	unknown EC_number=2.4.2._.; COG1488
YP_003446596.1	COG1476, COG1476, predicted transcriptional regulators
YP_003446599.1	COG113
YP_003446600.1	COG0782
YP_003446601.1	COG1559, predicted solute-binding protein
YP_003446602.1	COG0456
YP_003446603.1	COG3153
YP_003446604.1	COG0773
YP_003446606.1	COG0553
YP_003446607.1	COG4823, related to Lactocuccus lactis abiD
YP_003446609.1	COG1168
YP_003446612.1	COG4166
YP_003446613.1	COG2244
YP_003446614.1	COG0769
YP_003446618.1	COG1227
YP_003446619.1	COG2827, predicted endonuclease containing a URI domain
YP_003446620.1	COG4123, O-methyltransferase
YP_003446621.1	COG1098
YP_003446622.1	COG056
YP_003446624.1	COG0629
YP_003446626.1	COG2826, IS30 family
YP_003446627.1	COG0017
YP_003446628.1	COG0346
YP_003446632.1	COG0431, COG0431, predicted flavoprotein
YP_003446633.1	LPXTG motif; G5 domain family protein, collagen-like
YP_003446635.1	COG3022
YP_003446636.1	LPXTG motif
YP_003446637.1	COG3464
YP_003446638.1	pfam 02371, COG3547
YP_003446639.1	COG3525, LPXTG motif
YP_003446640.1	LPXTG motif
YP_003446641.1	COG3022
YP_003446645.1	COG0474
YP_003446646.1	COG0053
YP_003446647.1	COG0488
YP_003446648.1	COG0617
YP_003446649.1	COG0289
YP_003446652.1	COG1109
YP_003446653.1	COG4856
YP_003446655.1	COG0492
YP_003446656.1	COG1481
YP_003446658.1	COG1660
YP_003446660.1	COG0218, GTP-binding protein
YP_003446661.1	COG1219
YP_003446663.1	COG0262
YP_003446664.1	COG0783
YP_003446665.1	COG5263, COG3757
YP_003446666.1	COG0149
YP_003446669.1	COG0503
YP_003446670.1	pfam08241, methyltransf_11, methyltransferase domain.
YP_003446671.1	COG0081
YP_003446672.1	COG0080
YP_003446673.1	penicillin-insensitive metallo-DD-carboxypeptidase
YP_003446674.1	COG0537
YP_003446675.1	COG1363, FrvX, cellulase M and related proteins
YP_003446676.1	COG1114
YP_003446678.1	COG1573
YP_003446680.1	COG0778
YP_003446681.1	COG0834
YP_003446682.1	COG0622, predicted phosphoesterase
YP_003446683.1	COG0322
YP_003446684.1	COG5549, predicted Zn-dependent protease
YP_003446685.1	COG2348
YP_003446686.1	COG2348
YP_003446687.1	COG0627
YP_003446688.1	COG0595, metallo-beta-lactamase superfamily protein
YP_003446689.1	COG0608
YP_003446690.1	COG1126
YP_003446691.1	COG0834, excreted protein, signal peptide type I
YP_003446692.1	COG0765
YP_003446693.1	COG0765
YP_003446694.1	COG3839
YP_003446695.1	COG2508, regulator of polyketide synthase expression
YP_003446698.1	COG1670, acetyltransferase
YP_003446699.1	COG1045
YP_003446700.1	COG1185
YP_003446701.1	COG0685
YP_003446702.1	COG0620
YP_003446703.1	COG3666
YP_003446706.1	COG0610
YP_003446708.1	COG0732
YP_003446710.1	COG3943, virulence protein
YP_003446711.1	COG0286
YP_003446716.1	COG1940
YP_003446717.1	COG1263
YP_003446719.1	COG1609
YP_003446720.1	COG1257
YP_003446721.1	COG3425
YP_003446722.1	COG3610
YP_003446723.1	COG2966
YP_003446724.1	COG2815
YP_003446725.1	COG0631
YP_003446726.1	COG0144
YP_003446727.1	COG0223
YP_003446728.1	COG1198
YP_003446729.1	COG1758
YP_003446730.1	COG0194
YP_003446732.1	COG1418
YP_003446734.1	COG1323, predicted nucleotidyltransferase
YP_003446735.1	COG0500, SmtA, SAM-dependent methyltransferases
YP_003446738.1	COG1713, predicted hydrolase
YP_003446739.1	COG1057
YP_003446741.1	COG1161, predicted GTPase
YP_003446742.1	COG2179, predicted hydrolase of the HAD superfamily
YP_003446743.1	COG0598
YP_003446744.1	COG0668, MscS, small-conductance mechanosensitive channel
YP_003446745.1	COG3633
YP_003446751.1	COG0653
YP_003446755.1	COG0201
YP_003446756.1	COG0463
YP_003446757.1	COG1442
YP_003446758.1	COG1442
YP_003446759.1	COG1215, glycosyltransferases
YP_003446760.1	COG1442
YP_003446762.1	LbetaH domain
YP_003446763.1	COG1442
YP_003446764.1	LPXTG motif
YP_003446765.1	COG4108
YP_003446769.1	COG0064
YP_003446771.1	COG0231
YP_003446773.1	COG0781
YP_003446774.1	pfam02517
YP_003446775.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003446776.1	COG0825
YP_003446777.1	COG0777
YP_003446778.1	COG0439
YP_003446779.1	COG0764
YP_003446780.1	COG0511
YP_003446781.1	COG0304
YP_003446782.1	COG1028
YP_003446783.1	COG0331
YP_003446784.1	NAD(P)H-dependent flavin oxidoreductase, FMN-binding superfamily domain; cd00415
YP_003446785.1	acyl carrier protein, lipid metabolism / secondary metabolites biosynthesis, transport, and catabolism, COG0236, phosphopantetheine attachment site
YP_003446786.1	COG0332
YP_003446787.1	COG1846
YP_003446788.1	COG1024
YP_003446789.1	COG0527
YP_003446791.1	COG0172
YP_003446792.1	COG3464
YP_003446793.1	COG1725
YP_003446795.1	COG3293
YP_003446796.1	excreted protein, signal peptide type I collagen-binding surface protein
YP_003446797.1	COG0791, cell wall-associated hydrolases, PECACE domain
YP_003446800.1	COG1132
YP_003446806.1	bifunctional AAC
YP_003446809.1	COG2378, predicted transcriptional regulator
YP_003446813.1	COG2226
YP_003446815.1	COG1961
YP_003446820.1	COG1309
YP_003446823.1	COG1115
YP_003446825.1	COG5263, glucan-binding domain (YG repeat)
YP_003446826.1	COG5263, glucan-binding domain (YG repeat)
YP_003446829.1	Chaperone, homology to GrpE
YP_003446830.1	Chaperone, tetratricopeptide repeat domain, homology to DnaJ
YP_003446831.1	Chaperone, homology to DnaK, COG0443
YP_003446833.1	cd00093, HTH_XRE, helix-turn-helix XRE-family like proteins
YP_003446834.1	COG1193
YP_003446835.1	COG1286, CvpA, uncharacterized membrane protein
YP_003446837.1	COG1039
YP_003446839.1	COG0507
YP_003446840.1	COG0544
YP_003446842.1	COG2197
YP_003446843.1	COG4585
YP_003446844.1	COG4758, membrane protein
YP_003446845.1	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway
YP_003446846.1	COG1577
YP_003446847.1	COG3407
YP_003446848.1	COG1577
YP_003446849.1	COG5263, glucan-binding domain (YG repeat)
YP_003446850.1	COG0745, ompR family
YP_003446853.1	COG0116, predicted N6-adenine-specific DNA methylase
YP_003446856.1	pfam03838, RecU
YP_003446858.1	COG4166, ABC-type oligopeptide transport system
YP_003446860.1	smart00642, alpha-amylase domain
YP_003446863.1	COG3344, retron-type reverse transcriptase
YP_003446864.1	COG0542
YP_003446869.1	COG 1476
YP_003446873.1	COG0386
YP_003446876.1	pfam00817
YP_003446877.1	COG2932
YP_003446878.1	COG3104, PTR2, Dipeptide/tripeptide permease, proton-dependent transport
YP_003446879.1	COG1373, AAA+ superfamily
YP_003446882.1	COG1733
YP_003446883.1	similar to methylenomycin A resistance protein
YP_003446885.1	similar to phage integrase familiy
YP_003446895.1	cd01189, INT_phiLC3_C, phage-related integrases, site-specific recombinases
YP_003446898.1	COG2826, IS30 family
YP_003446899.1	COG1668, NatB, ABC-type Na+ efflux pump, quorum sensing regulated
YP_003446900.1	COG4555, NatA, ABC-type Na+ transport system, quorum sensing regulated
YP_003446906.1	pfam01569, PAP2 superfamily.
YP_003446908.1	COG0219, CspR, SpoU family
YP_003446909.1	COG0619, CbiQ, ABC-type cobalt transport system
YP_003446910.1	COG1122, CbiO, ABC-type cobalt transport system
YP_003446913.1	COG0569, TrkA, K+ transport system, NAD-binding component
YP_003446914.1	COG0168, TrkG, Trk-type K+ transport system, membrane component
YP_003446916.1	COG0389, DinP, nucleotidyltransferase/DNA polymerase involved in DNA repair
YP_003446917.1	bacitracin resistance protein
YP_003446926.1	COG1461, predicted kinase related to dihydroxyacetone kinase
YP_003446929.1	COG2826, IS30 family
YP_003446930.1	COG2826, IS30 family
YP_003446932.1	pfam04397, LytTr DNA-binding domain.
YP_003446933.1	smart00014, acidPPc, acid phosphatase homologues
YP_003446934.1	COG1132, MdlB, ABC-type multidrug transport system
YP_003446935.1	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease component
YP_003446936.1	pfam01047, MarR family.
YP_003446938.1	COG0534, NorM, Na+-driven multidrug efflux pump
YP_003446940.1	COG1058, CinA, predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
YP_003446941.1	COG1316, LytR, one TM helix predicted
YP_003446942.1	pfam00583, acetyltransferase (GNAT) family
YP_003446943.1	COG0802, predicted ATPase or kinase
YP_003446948.1	COG1523, pullulanase PulA and related glycosidases, LPXTG motif
YP_003446949.1	COG2141, flavin-dependent oxidoreductases
YP_003446951.1	pfam00232, glycosyl hydrolase family 1.
YP_003446953.1	EEP protein, determinant for enhanced expression of pheromone
YP_003446956.1	COG2826, IS30 family
YP_003446957.1	COG2826, IS30 family
YP_003446962.1	COG2826, IS30 family
YP_003446963.1	pfam00583, acetyltransferase (GNAT) family
YP_003446964.1	pfam00583, acetyltransferase (GNAT) family
YP_003446966.1	Pfam04397, LytTr DNA-binding domain
YP_003446967.1	COG0842, multidrug transport system
YP_003446968.1	COG1131, CcmA, multidrug transport system
YP_003446970.1	COG0406
YP_003446971.1	COG5263, glucan-binding domain (YG repeat)
YP_003447003.1	COG2826, IS30 family
YP_003447004.1	pfam00485, PRK, phosphoribulokinase / uridine kinase family
YP_003447005.1	COG0602, NrdG, organic radical activating enzymes; anaerobic ribonucleoside-triphosphate reductase activator
YP_003447006.1	COG3981
YP_003447008.1	COG1328, NrdD, oxygen-sensitive ribonucleoside-triphosphate reductase
YP_003447010.1	orf47, induced duriong competence in Streptococcus pneumoniae
YP_003447011.1	COG1502, Cls, phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases
YP_003447012.1	excreted protein, signal peptide type I
YP_003447013.1	COG0285, FolC, folylpolyglutamate synthase, bifunctional protein
YP_003447015.1	smart00732
YP_003447017.1	membrane bound lipoprotein
YP_003447018.1	COG1393, arsenate reductase and related proteins, glutaredoxin family
YP_003447019.1	COG0474, cation transport ATPase
YP_003447020.1	COG0006, Xaa-Pro aminopeptidase
YP_003447021.1	COG0178, excinuclease ATPase subunit
YP_003447022.1	COG0598, Mg2+ and Co2+ transporters, CorA family
YP_003447024.1	COG1619, homologs of microcin C7 resistance protein MccF
YP_003447025.1	pfam03352, methyladenine glycosylase
YP_003447026.1	COG0632, holiday junction resolvasome, DNA-binding subunit
YP_003447027.1	COG 0323.1, MutL
YP_003447029.1	pfam04397, LytTr DNA-binding domain
YP_003447031.1	COG1780, proteins involved in ribonucleotide reduction
YP_003447033.1	COG 4753, two component regulatory system, response regulators containing CheY-like receiver domain and AraC-type DNA-binding domain
YP_003447034.1	COG2972, sensor histidine kinase, two component regulatory system; signal transduction proteins with a C-terminal ATPase domain
YP_003447035.1	COG5578, predicted integral membrane proteins
YP_003447037.1	COG 2011, metal ion transport
YP_003447038.1	COG1135, metal ion transport system
YP_003447039.1	COG0624, acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase /and related deacylases; peptidase family M20. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are glutamate carboxypeptidases.
YP_003447040.1	COG1464, ABC-type metal ion transport system
YP_003447041.1	pfam00497, bacterial extracellular solute-binding proteins
YP_003447042.1	pfam00497, bacterial extracellular solute-binding proteins, duplication of smi_1945
YP_003447043.1	COG4392, membrane protein
YP_003447044.1	COG1296, AzlC protein
YP_003447045.1	pfam02517
YP_003447046.1	cd00093, Helix-turn-helix XRE-family like proteins.
YP_003447047.1	COG0533, QRI7, metal-dependent proteases with possible chaperone activity
YP_003447048.1	COG0456
YP_003447049.1	COG1214, inactive homolog of metal-dependent proteases
YP_003447050.1	COG2826, IS30 family
YP_003447051.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003447052.1	bacteriocin/pheromone -type, double glycine-cleavage motif
YP_003447056.1	COG0595, predicted hydrolase of the metallo-beta-lactamase superfamily pfam00753
YP_003447057.1	COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell division
YP_003447059.1	pfam03054, COG0482, tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
YP_003447060.1	COG2826, IS30 family
YP_003447063.1	COG0165
YP_003447064.1	COG0137
YP_003447065.1	pfam00497, bacterial extracellular solute-binding proteins, family 3
YP_003447066.1	COG1136, antimicrobial peptide transport system, ATPase component
YP_003447071.1	membrane spanning protein
YP_003447073.1	cd00093, Helix-turn-helix XRE-family like proteins
YP_003447074.1	cd00118, LysM, Lysin domain
YP_003447075.1	pfam 03315; COG1760
YP_003447076.1	pfam03313; COG1760
YP_003447077.1	COG0637, predicted phosphatase
YP_003447078.1	COG1086
YP_003447079.1	pfam00535, Glycos_transf_2
YP_003447080.1	COG2807
YP_003447081.1	COG1695, predicted transcriptional regulators
YP_003447082.1	COG4709, predicted membrane protein
YP_003447086.1	cd01518, rhodanese homology domain superfamily
YP_003447087.1	related to bacteriocin immunity proteins
YP_003447088.1	pfam02517
YP_003447090.1	COG0395, UgpE, ABC-type sugar transport system
YP_003447091.1	COG1175; ABC-type polysaccharide transport system
YP_003447093.1	fam00480, ROK family
YP_003447094.1	COG0383, alpha-mannosidase
YP_003447098.1	phage-related
YP_003447101.1	COG3378, predicted ATPase
YP_003447102.1	similar to replication protein Streptococcus thermophilus plasmid
YP_003447103.1	phage-related
YP_003447104.1	phage-associated protein
YP_003447109.1	COG3646, uncharacterized phage-encoded protein
YP_003447110.1	COG1476, predicted transcriptional regulator
YP_003447111.1	cd00093, helix-turn-helix XRE-family like proteins
YP_003447112.1	COG2865, predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
YP_003447113.1	cd01189, phiLC3 phage and phage-related integrases, site-specific recombinases
YP_003447114.1	COG3537, alpha-1,2-mannosidase
YP_003447115.1	COG3669, alpha-L-fucosidase
YP_003447117.1	COG3250
YP_003447119.1	COG2503, predicted secreted acid phosphatase, signal peptide type I
YP_003447120.1	cd01017, metal binding protein AcdA
YP_003447121.1	COG1108, ABC-type Mn2+/Zn2+ transport systems
YP_003447122.1	COG1121, ABC-type Mn/Zn transport, ATPase component
YP_003447123.1	pfam01047, MarR family
YP_003447124.1	facilitates D-alanine ligation to DCP by binding Dcl and Dcp
YP_003447126.1	involved in D-alanine export
YP_003447127.1	D-alanine-activating enzyme
YP_003447129.1	cd00333, major intrinsic protein (MIP) superfamily
YP_003447130.1	COG0578
YP_003447131.1	COG0554
YP_003447133.1	cd00498, Hsp33, heat shock protein 33 (Hsp33)
YP_003447134.1	COG0042
YP_003447139.1	COG3201, PnuC
YP_003447140.1	COG3172, NadR, predicted ATPase/kinase involved in NAD metabolism
YP_003447141.1	COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit
YP_003447142.1	pfam05848, firmicute transcriptional repressor of class III stress genes (CtsR)
YP_003447143.1	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
YP_003447144.1	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems
YP_003447145.1	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
YP_003447147.1	COG5263, glucan-binding domain (YG repeat); pfam05257, CHAP domain. This domain corresponds to an amidase function
YP_003447149.1	COG0305
YP_003447151.1	COG3887, protein containing a modified GGDEF domain and a DHH domain
YP_003447152.1	COG1544, ribosome-associated protein Y
YP_003447153.1	COG1040, predicted amidophosphoribosyltransferases, involved in transformation
YP_003447154.1	COG4098, superfamily II DNA/RNA helicase required for DNA uptake
YP_003447156.1	COG0031
YP_003447157.1	pfam00889, elongation factor TS
YP_003447159.1	pfam05257, CHAP domain. This domain corresponds to an amidase function
YP_003447160.1	COG2891
YP_003447161.1	COG1792
YP_003447162.1	COG0619, ABC-type cobalt transport system, permease component
YP_003447163.1	COG1122, ABC-type cobalt transport system, ATPase component
YP_003447164.1	COG1122, ABC-type cobalt transport system, ATPase component
YP_003447165.1	COG0558, PgsA
YP_003447167.1	COG0612, predicted Zn-dependent peptidases
YP_003447168.1	COG0612, predicted Zn-dependent peptidases
YP_003447170.1	COG1195, recombinational DNA repair
YP_003447171.1	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain
YP_003447172.1	COG0180, tryptophanyl-tRNA synthetase
YP_003447173.1	COG0488, ATPase components of ABC transporters with duplicated ATPase domains
YP_003447175.1	membrane protein
YP_003447177.1	comE, competence-specific
YP_003447178.1	comD, competence-specific
YP_003447181.1	COG0265, trypsin-like serine proteases
YP_003447182.1	parB family, similar to spoOJ