-- dump date   	20140620_083920
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
7683411	argininosuccinate synthase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032
7684744	UDP-glucose 6-dehydrogenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00984; match to protein family HMM PF03721; match to protein family HMM TIGR03026
7683033	AzlC family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03591
7684049	ABC transporter membrane-spanning permease - iron transport, degenerate; this region contains one or more premature stops and/or frameshifts
7684658	Fe(3+) ions import ATP-binding protein FbpC, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00005; match to protein family HMM PF08402
7685121	transcriptional regulator, AraC family protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00165
7683023	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
7683762	Spn1 transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
7683744	choline binding protein G, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00089
7685143	glycosyl transferase, family 8, degenerate; this region contains one or more premature stops and/or frameshifts
7683611	transport/processing ATP-binding protein ComA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03412
7683265	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7684068	transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00665
7683124	acetyltransferase, gnat family, degenerate; this region contains one or more premature stops and/or frameshifts
7685109	radical SAM superfamily protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
7684763	glutamate/aspartate transport ATP-binding protein GltL, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00005
7684426	sodium-dependent transporter authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00209
7684583	regulator of the multidrug efflux pump PmrA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07739
7684563	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7683191	transposase (IS4 family), degenerate; this region contains one or more premature stops and/or frameshifts
7685037	alanine dehydrogenase (Stage V sporulation protein N), degenerate; this region contains one or more premature stops and/or frameshifts
7683746	type IV secretory pathway, VirB4 component, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7683267	ABC-type transport system, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7685119	transposase and inactivated derivative, degenerate; this region contains one or more premature stops and/or frameshifts
7684525	site-specific recombinase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00239; match to protein family HMM PF07508
7684681	chromosome segregation ATPase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03432
7685195	phosphoserine phosphatase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7683032	Spn1, transposase Orf2; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
7684401	transposase; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
7684710	transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7683316	membrane protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
7683701	transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03050
7684457	enzyme of poly-gamma-glutamate biosynthesis, degenerate; this region contains one or more premature stops and/or frameshifts
7684605	transposase; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00665
7683990	ABC transporter authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7684841	nitroreductase family protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00881
7684110	preprotein translocase subunit SecA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07517
7685015	glycosyl transferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7684451	glyoxalase/bleomycin resistance protein/dioxygenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7684540	pyrrolidone-carboxylate peptidase 2, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7683363	phosphoglycolate phosphatase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00702
7684770	transcriptional regulator, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7684581	Spn1 transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
7683041	protein DltB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF03062