-- dump date 20140620_084543 -- class Genbank::CDS -- table cds_note -- id note YP_002036722.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002036723.1 binds the polymerase to DNA and acts as a sliding clamp YP_002036724.1 identified by match to protein family HMM PF06107 YP_002036725.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002036726.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002036727.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002036728.1 identified by match to protein family HMM PF01479 YP_002036729.1 identified by match to protein family HMM PF04977 YP_002036732.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002036733.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002036734.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_002036739.1 identified by glimmer; putative YP_002036740.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002036741.1 contains potential frameshift; identified by match to protein family HMM PF00383 YP_002036742.1 contains potential frameshift YP_002036743.1 catalyzes the formation of dUMP from dUTP YP_002036744.1 identified by match to protein family HMM PF00300 YP_002036745.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002036746.1 identified by match to protein family HMM PF00484 YP_002036747.1 contains potential frameshift YP_002036748.1 contains potential frameshift YP_002036749.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002036751.1 identified by glimmer; putative YP_002036753.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002036754.1 identified by glimmer; putative YP_002036755.1 identified by match to protein family HMM PF03601 YP_002036756.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci YP_002036757.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002036758.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002036761.1 identified by match to protein family HMM TIGR01847 YP_002036762.1 identified by glimmer; putative YP_002036763.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_002036764.1 identified by match to protein family HMM TIGR01000 YP_002036765.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002036766.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_002036767.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002036768.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002036769.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002036770.1 identified by match to protein family HMM PF04892 YP_002036771.1 involved in de novo purine biosynthesis YP_002036772.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002036773.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002036774.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002036775.1 identified by glimmer; putative YP_002036776.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002036777.1 identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002036778.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002036779.1 identified by match to protein family HMM PF01301; match to protein family HMM PF02449 YP_002036780.1 identified by match to protein family HMM PF03830 YP_002036781.1 identified by match to protein family HMM PF03609 YP_002036782.1 identified by match to protein family HMM PF03613 YP_002036783.1 identified by match to protein family HMM PF03610 YP_002036784.1 identified by match to protein family HMM PF01380 YP_002036785.1 identified by match to protein family HMM PF01263 YP_002036787.1 identified by match to protein family HMM PF01473 YP_002036788.1 identified by glimmer; putative YP_002036789.1 identified by match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM PF07581 YP_002036791.1 identified by match to protein family HMM PF00903 YP_002036793.1 identified by match to protein family HMM PF01048 YP_002036794.1 identified by match to protein family HMM PF02386 YP_002036795.1 identified by match to protein family HMM PF02254 YP_002036798.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002036799.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002036800.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002036801.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002036802.1 identified by glimmer; putative YP_002036804.1 identified by match to protein family HMM PF00528 YP_002036805.1 identified by match to protein family HMM PF00528 YP_002036806.1 identified by match to protein family HMM PF01547 YP_002036807.1 identified by glimmer; putative YP_002036809.1 identified by glimmer; putative YP_002036812.1 identified by match to protein family HMM PF03551 YP_002036813.1 identified by match to protein family HMM PF07690 YP_002036814.1 identified by match to protein family HMM PF00535 YP_002036815.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002036816.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002036817.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002036818.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002036819.1 identified by match to protein family HMM PF01476 YP_002036820.1 identified by match to protein family HMM TIGR01654 YP_002036821.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002036822.1 identified by match to protein family HMM PF00497 YP_002036823.1 identified by match to protein family HMM PF00764 YP_002036826.1 identified by glimmer; putative YP_002036834.1 identified by glimmer; putative YP_002036836.1 identified by match to protein family HMM PF01473 YP_002036837.1 identified by glimmer; putative YP_002036838.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002036839.1 identified by match to protein family HMM PF00293 YP_002036840.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002036841.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002036842.1 identified by match to protein family HMM PF07288 YP_002036843.1 identified by match to protein family HMM TIGR01847 YP_002036844.1 Guiral PNAS 2005. 102(24):8710-8715 YP_002036845.1 identified by match to protein family HMM PF00814 YP_002036846.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002036847.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002036849.1 identified by match to protein family HMM PF01610 YP_002036850.1 contains potential frameshift YP_002036851.1 contains potential frameshift; identified by match to protein family HMM PF00534 YP_002036852.1 identified by match to protein family HMM PF00535 YP_002036853.1 identified by match to protein family HMM PF00005 YP_002036854.1 identified by match to protein family HMM PF01609 YP_002036856.1 identified by match to protein family HMM PF02585 YP_002036857.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002036858.1 identified by match to protein family HMM TIGR01716 YP_002036860.1 identified by match to protein family HMM PF02517 YP_002036861.1 identified by match to protein family HMM PF02517 YP_002036863.1 identified by match to protein family HMM PF03591 YP_002036864.1 identified by match to protein family HMM PF05437 YP_002036865.1 identified by match to protein family HMM PF00497 YP_002036866.1 identified by match to protein family HMM PF03180 YP_002036867.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_002036868.1 identified by match to protein family HMM PF00005 YP_002036869.1 identified by match to protein family HMM PF00528 YP_002036870.1 identified by match to protein family HMM TIGR02185 YP_002036871.1 identified by match to protein family HMM PF04854 YP_002036872.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_002036873.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002036875.1 has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002036877.1 identified by glimmer; putative YP_002036878.1 identified by match to protein family HMM PF04397 YP_002036880.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002036881.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002036882.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_002036883.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002036884.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002036885.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002036886.1 identified by match to protein family HMM PF03352 YP_002036887.1 identified by match to protein family HMM PF02517 YP_002036888.1 identified by match to protein family HMM PF02016 YP_002036889.1 identified by match to protein family HMM PF06570 YP_002036890.1 identified by match to protein family HMM PF01544 YP_002036891.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002036892.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002036893.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002036894.1 identified by glimmer; putative YP_002036895.1 identified by glimmer; putative YP_002036896.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002036897.1 identified by match to protein family HMM PF06949 YP_002036898.1 identified by glimmer; putative YP_002036899.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002036901.1 identified by match to protein family HMM PF00614 YP_002036903.1 identified by glimmer; putative YP_002036904.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002036906.1 identified by match to protein family HMM PF00583 YP_002036907.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491 YP_002036908.1 identified by glimmer; putative YP_002036909.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002036910.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002036911.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002036912.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002036913.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002036914.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002036915.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002036916.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002036917.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002036918.1 one of the stabilizing components for the large ribosomal subunit YP_002036919.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002036920.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002036921.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002036922.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002036923.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002036924.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002036925.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002036926.1 binds 5S rRNA along with protein L5 and L25 YP_002036927.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002036928.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002036929.1 late assembly protein YP_002036930.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002036931.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002036932.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002036933.2 truncated; contains potential frameshift; identified by match to protein family HMM PF00416 YP_002036934.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002036935.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002036936.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002036937.1 ACT domain-containing protein YP_002036938.1 identified by match to protein family HMM PF05167 YP_002036939.1 identified by match to protein family HMM PF00300 YP_002036940.1 contains potential frameshift; Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36. YP_002036941.1 contains potential frameshift; Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36. YP_002036942.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36. YP_002036943.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36.; identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002036944.1 contains potential frameshift YP_002036945.1 contains potential frameshift YP_002036946.1 identified by match to protein family HMM PF00165 YP_002036947.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002036948.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002036949.1 identified by match to protein family HMM PF04198 YP_002036950.1 identified by match to protein family HMM PF02255 YP_002036951.1 identified by match to protein family HMM PF02302 YP_002036952.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002036953.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_002036954.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies YP_002036955.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002036956.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002036957.1 identified by match to protein family HMM PF00583 YP_002036958.1 identified by match to protein family HMM PF00583 YP_002036959.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002036960.1 identified by match to protein family HMM PF06042 YP_002036961.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002036962.1 identified by match to protein family HMM PF01148 YP_002036963.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002036964.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002036965.1 identified by match to protein family HMM PF00232 YP_002036966.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002036967.1 identified by glimmer; putative YP_002036968.1 identified by match to protein family HMM PF00128; match to protein family HMM PF00746; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; match to protein family HMM TIGR02102 YP_002036969.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002036970.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002036971.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002036972.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002036973.1 identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384 YP_002036974.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002036976.1 identified by match to protein family HMM PF02073 YP_002036977.1 identified by match to protein family HMM PF04226 YP_002036978.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002036979.1 identified by match to protein family HMM PF03051 YP_002036980.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002036981.1 identified by match to protein family HMM PF03609 YP_002036982.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830 YP_002036983.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002036984.1 identified by glimmer; putative YP_002036985.1 contains potential frameshift; identified by match to protein family HMM PF08282 YP_002036986.1 contains potential frameshift YP_002036987.1 identified by match to protein family HMM PF00860 YP_002036988.1 identified by match to protein family HMM PF02517 YP_002036989.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002036990.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002036991.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002036992.1 identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498 YP_002036994.1 contains potential frameshift; identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066 YP_002036995.1 forms a direct contact with the tRNA during translation YP_002036996.1 identified by match to protein family HMM PF00589 YP_002036998.1 identified by match to protein family HMM PF01055 YP_002036999.1 identified by match to protein family HMM PF00255 YP_002037000.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02018; match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; match to protein family HMM TIGR01167 YP_002037002.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002037003.1 carbohydrate kinase, PfkB family; identified by match to protein family HMM PF00294 YP_002037004.1 identified by match to protein family HMM PF02502 YP_002037005.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002037006.1 identified by match to protein family HMM PF03610 YP_002037007.1 identified by match to protein family HMM PF07470 YP_002037008.1 identified by match to protein family HMM PF03830 YP_002037009.1 identified by match to protein family HMM PF03609 YP_002037010.1 identified by match to protein family HMM PF03613 YP_002037011.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_002037012.1 identified by match to protein family HMM PF07940 YP_002037013.1 Chapuy-Regaud,S.; (2003)Inf.& Imm. 71: 2615-2625; identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002037016.1 identified by glimmer; putative YP_002037017.1 identified by match to protein family HMM PF01381 YP_002037018.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002037019.1 identified by match to protein family HMM TIGR02209 YP_002037020.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002037021.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002037023.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002037024.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002037025.1 identified by match to protein family HMM PF08903 YP_002037026.1 identified by match to protein family HMM PF00128 YP_002037027.1 identified by glimmer; putative YP_002037028.1 identified by glimmer; putative YP_002037029.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002037030.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF02811 YP_002037031.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006 YP_002037032.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM TIGR01007 YP_002037033.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_002037034.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002037035.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF04991 YP_002037036.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF00535 YP_002037037.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396 YP_002037038.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396 YP_002037039.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002037040.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_002037041.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF00908 YP_002037042.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002037043.1 Bentley, S.D.; 2006 PLOS Genetics 2: 0262-0269 Guidolin,A.; 1994 Inf.Imm. 62:5384-5396; identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002037044.1 identified by match to protein family HMM PF03050 YP_002037047.1 identified by match to protein family HMM PF00496 YP_002037048.1 identified by match to protein family HMM PF00754; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002037049.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002037050.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_002037051.1 identified by match to protein family HMM PF06908 YP_002037052.1 identified by match to protein family HMM PF05103 YP_002037053.1 identified by glimmer; putative YP_002037054.1 identified by match to protein family HMM PF01170 YP_002037056.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002037057.1 Ulijasz et al., J Bacteriol. 2004 186(23):8123-36.; identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002037058.1 identified by match to protein family HMM PF01473 YP_002037060.1 identified by match to protein family HMM PF01473 YP_002037061.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549 YP_002037062.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240 YP_002037063.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220 YP_002037064.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002037066.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002037067.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002037071.1 identified by match to protein family HMM PF00089; match to protein family HMM PF01473 YP_002037073.1 identified by match to protein family HMM PF01473 YP_002037076.1 identified by match to protein family HMM PF01527 YP_002037077.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851 YP_002037078.1 identified by match to protein family HMM PF08279 YP_002037079.1 identified by match to protein family HMM PF00359 YP_002037080.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002037082.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002037083.1 identified by match to protein family HMM TIGR01448 YP_002037084.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002037085.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002037087.1 identified by match to protein family HMM PF02674 YP_002037088.1 function of MutS2 is unknown. It should not be considered a DNA mismactch repair. MutS2 lineage is currently functionally uncharacterized.; identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_002037089.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002037090.1 identified by glimmer; putative YP_002037091.1 identified by match to protein family HMM PF03595 YP_002037092.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002037093.1 identified by match to protein family HMM PF06115 YP_002037094.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_002037096.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002037097.1 Sullavik, M.C. 1995 Mol.Med.1:436-446; identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002037098.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002037099.1 carries the fatty acid chain in fatty acid biosynthesis YP_002037100.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_002037101.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002037102.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002037103.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002037104.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002037105.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002037106.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002037107.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002037108.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus YP_002037111.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002037112.1 identified by match to protein family HMM PF03780 YP_002037113.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002037114.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002037115.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002037116.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002037117.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002037118.1 required for 70S ribosome assembly YP_002037119.1 identified by match to protein family HMM PF03780 YP_002037120.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002037121.1 identified by match to protein family HMM PF01610 YP_002037122.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002037123.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002037124.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002037127.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002037130.1 identified by match to protein family HMM PF00005 YP_002037131.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037134.1 identified by match to protein family HMM PF02371 YP_002037135.1 identified by glimmer; putative YP_002037136.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002037138.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002037139.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002037143.1 identified by match to protein family HMM PF00480 YP_002037144.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002037145.1 contains potential frameshift YP_002037146.1 contains potential frameshift YP_002037147.1 identified by match to protein family HMM PF02255 YP_002037148.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_002037149.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002037150.1 identified by match to protein family HMM PF02386 YP_002037151.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002037152.1 identified by match to protein family HMM PF01887 YP_002037153.1 identified by match to protein family HMM PF07155 YP_002037154.1 identified by match to protein family HMM PF00005 YP_002037155.1 identified by match to protein family HMM PF02361 YP_002037156.1 identified by match to protein family HMM PF00588 YP_002037158.1 identified by match to protein family HMM PF01569 YP_002037161.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_002037163.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002037164.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002037165.1 identified by match to protein family HMM PF00754; match to protein family HMM PF03644; match to protein family HMM PF07523 YP_002037166.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM TIGR01167 YP_002037167.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002037169.1 identified by match to protein family HMM PF01609 YP_002037172.1 identified by match to protein family HMM PF00376 YP_002037173.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002037174.1 identified by glimmer; putative YP_002037175.1 identified by match to protein family HMM PF01420 YP_002037176.1 identified by match to protein family HMM PF01420 YP_002037177.1 identified by match to protein family HMM PF02384; match to protein family HMM PF05175 YP_002037178.1 identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463 YP_002037181.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002037182.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002037183.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002037184.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002037186.1 identified by match to protein family HMM PF01230 YP_002037187.1 identified by match to protein family HMM PF00005 YP_002037188.1 identified by match to protein family HMM PF05975 YP_002037189.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703 YP_002037190.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM PF04397 YP_002037191.1 de Saizieu A J Bacteriol. 2000 Sep;182(17):4696-703.; identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002037192.1 de Saizieu A J Bacteriol. 2000 Sep;182(17):4696-703.; identified by match to protein family HMM PF02518 YP_002037193.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM PF08128; match to protein family HMM TIGR01847 YP_002037194.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM TIGR01000 YP_002037195.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_002037197.1 identified by glimmer; putative YP_002037201.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM TIGR01847 YP_002037202.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703 YP_002037204.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM TIGR01847 YP_002037207.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703 YP_002037208.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703; identified by match to protein family HMM PF02517 YP_002037209.1 De Saizieu, A.; 2000 J.Bact 182:4696-4703 YP_002037210.1 identified by match to protein family HMM PF02517 YP_002037211.1 identified by match to protein family HMM PF01636 YP_002037212.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002037213.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002037214.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002037215.1 identified by match to protein family HMM PF04296 YP_002037216.1 identified by match to protein family HMM PF01248 YP_002037217.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002037218.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002037219.1 identified by match to protein family HMM PF01609 YP_002037222.1 identified by glimmer; putative YP_002037223.1 identified by match to protein family HMM PF08984 YP_002037224.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_002037225.1 identified by glimmer; putative YP_002037228.1 identified by glimmer; putative YP_002037229.1 identified by match to protein family HMM PF00583 YP_002037230.1 identified by glimmer; putative YP_002037231.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002037232.1 contains potential frameshift YP_002037233.1 contains potential frameshift YP_002037234.1 identified by match to protein family HMM PF02661 YP_002037239.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002037240.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_002037241.1 identified by match to protein family HMM PF00232 YP_002037242.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002037243.1 identified by match to protein family HMM PF00583 YP_002037244.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002037245.1 identified by match to protein family HMM PF03372 YP_002037248.1 contains potential frameshift; identified by match to protein family HMM PF01381 YP_002037249.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002037250.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002037251.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002037252.1 identified by match to protein family HMM TIGR01172 YP_002037253.1 identified by match to protein family HMM PF00583 YP_002037254.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002037255.1 identified by match to protein family HMM PF00636 YP_002037256.1 identified by glimmer; putative YP_002037259.1 identified by match to protein family HMM PF02687 YP_002037260.1 identified by match to protein family HMM PF00005 YP_002037261.1 identified by match to protein family HMM PF02687 YP_002037262.1 Haas W J Bacteriol. 2004 186(24):8463-71.; identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002037263.1 Haas W J Bacteriol. 2004 186(24):8463-71.; identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002037264.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002037265.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794 YP_002037266.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037267.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037268.1 identified by match to protein family HMM PF00497 YP_002037269.1 identified by match to protein family HMM PF00005 YP_002037270.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002037271.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002037272.1 identified by match to protein family HMM PF00756 YP_002037273.1 identified by match to protein family HMM PF02388 YP_002037274.1 identified by match to protein family HMM PF02388 YP_002037275.1 identified by match to protein family HMM PF00413 YP_002037276.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002037278.1 identified by match to protein family HMM PF00497 YP_002037279.1 contains potential frameshift YP_002037280.1 contains potential frameshift; identified by match to protein family HMM PF00881 YP_002037281.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002037282.1 identified by match to protein family HMM PF03167 YP_002037285.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002037286.1 identified by match to protein family HMM PF05343 YP_002037287.1 identified by match to protein family HMM PF01230 YP_002037288.1 identified by match to protein family HMM PF02557 YP_002037289.1 binds directly to 23S ribosomal RNA YP_002037290.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002037294.1 identified by match to protein family HMM PF00005 YP_002037295.1 identified by match to protein family HMM PF06182 YP_002037296.1 identified by match to protein family HMM PF06182 YP_002037297.1 identified by glimmer; putative YP_002037299.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF05922; match to protein family HMM PF06280; match to protein family HMM TIGR01167 YP_002037300.1 identified by match to protein family HMM PF00359 YP_002037302.1 identified by match to protein family HMM PF03611 YP_002037303.1 identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002037307.1 identified by glimmer; putative YP_002037309.1 identified by glimmer; putative YP_002037310.1 identified by match to protein family HMM PF06962 YP_002037312.1 identified by match to protein family HMM PF00999 YP_002037313.1 identified by match to protein family HMM PF03631 YP_002037314.1 identified by match to protein family HMM PF02683 YP_002037315.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002037316.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002037317.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002037318.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580 YP_002037319.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_002037320.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167 YP_002037321.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 YP_002037323.1 contains potential frameshift; identified by match to protein family HMM PF01473; match to protein family HMM PF05901 YP_002037324.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_002037325.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002037327.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002037328.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002037329.1 identified by glimmer; putative YP_002037330.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002037331.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002037332.1 identified by match to protein family HMM PF00126 YP_002037333.1 identified by match to protein family HMM PF06014 YP_002037334.1 identified by match to protein family HMM PF00581 YP_002037336.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002037337.1 contains potential frameshift; identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231 YP_002037338.1 contains potential frameshift; identified by match to protein family HMM PF00679 YP_002037340.1 identified by match to protein family HMM TIGR01653 YP_002037341.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002037342.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002037343.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002037344.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002037345.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002037346.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002037347.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002037348.1 contains potential frameshift YP_002037349.1 identified by glimmer; putative YP_002037350.1 identified by glimmer; putative YP_002037352.1 identified by match to protein family HMM PF00005 YP_002037353.1 contains potential frameshift YP_002037354.1 contains potential frameshift YP_002037355.1 contains potential frameshift YP_002037356.1 identified by match to protein family HMM PF00005 YP_002037359.1 identified by match to protein family HMM TIGR01726 YP_002037360.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037362.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002037363.1 identified by match to protein family HMM PF01070; match to protein family HMM TIGR02708 YP_002037364.1 identified by match to protein family HMM PF03070 YP_002037365.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002037366.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_002037368.1 identified by match to protein family HMM PF00005 YP_002037370.1 identified by match to protein family HMM PF03070 YP_002037371.1 identified by match to protein family HMM TIGR02359 YP_002037372.1 identified by match to protein family HMM PF02110 YP_002037373.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002037374.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002037375.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698 YP_002037377.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002037378.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720 YP_002037379.1 identified by match to protein family HMM PF00903 YP_002037382.1 contains potential frameshift; identified by glimmer; putative YP_002037383.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002037384.1 identified by match to protein family HMM PF00209 YP_002037385.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278 YP_002037386.1 identified by match to protein family HMM PF00293 YP_002037387.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_002037388.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002037389.1 identified by match to protein family HMM PF00440 YP_002037390.1 identified by match to protein family HMM PF00383 YP_002037391.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002037392.1 contains potential frameshift; identified by match to protein family HMM PF00574 YP_002037393.1 contains potential frameshift YP_002037394.1 identified by glimmer; putative YP_002037395.1 identified by match to protein family HMM PF01094 YP_002037396.1 identified by match to protein family HMM PF02653 YP_002037397.1 identified by match to protein family HMM PF02653 YP_002037398.1 identified by match to protein family HMM PF00005 YP_002037399.1 identified by match to protein family HMM PF00005 YP_002037400.1 identified by match to protein family HMM PF00571 YP_002037401.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002037402.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002037403.1 identified by match to protein family HMM PF02687 YP_002037404.1 contains potential frameshift YP_002037405.1 contains potential frameshift; identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830 YP_002037406.1 contains potential frameshift; identified by glimmer; putative YP_002037407.1 contains potential frameshift YP_002037408.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002037409.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002037410.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_002037411.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002037412.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002037413.1 identified by glimmer; putative YP_002037414.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002037415.1 identified by match to protein family HMM PF04892 YP_002037416.1 identified by match to protein family HMM PF00005 YP_002037417.1 identified by match to protein family HMM PF00160 YP_002037420.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002037422.1 identified by match to protein family HMM PF00561 YP_002037423.1 Essential for efficient processing of 16S rRNA YP_002037424.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002037425.1 identified by glimmer; putative YP_002037426.1 identified by glimmer; putative YP_002037428.1 identified by match to protein family HMM PF02632 YP_002037429.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_002037430.1 identified by match to protein family HMM TIGR01730 YP_002037431.1 identified by match to protein family HMM PF00005 YP_002037432.1 identified by match to protein family HMM PF02687 YP_002037433.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002037434.1 identified by match to protein family HMM PF03551 YP_002037436.1 identified by match to protein family HMM PF00248 YP_002037438.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002037439.1 identified by match to protein family HMM PF00293 YP_002037440.1 identified by match to protein family HMM PF02896 YP_002037441.1 identified by match to protein family HMM PF06171 YP_002037442.1 identified by match to protein family HMM PF01433 YP_002037443.1 Guenzi Mol Microbiol. 1994 12(3):505-15.; identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002037444.1 Guenzi Mol Microbiol. 1994 12(3):505-15.; identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002037446.1 identified by glimmer; putative YP_002037447.1 unwinds DNA YP_002037448.1 identified by match to protein family HMM PF01098 YP_002037449.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002037450.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002037451.1 negatively supercoils closed circular double-stranded DNA YP_002037452.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_002037453.1 identified by match to protein family HMM PF05717 YP_002037454.1 identified by match to protein family HMM PF08860 YP_002037455.1 contains potential frameshift YP_002037456.1 identified by match to protein family HMM PF01710 YP_002037458.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002037459.1 identified by match to protein family HMM PF08796 YP_002037460.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037461.1 identified by match to protein family HMM PF00005 YP_002037462.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002037463.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_002037464.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002037465.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002037466.1 identified by match to protein family HMM PF08002 YP_002037467.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002037471.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_002037473.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002037474.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002037476.1 identified by match to protein family HMM PF05175 YP_002037477.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002037478.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002037479.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002037480.1 identified by match to protein family HMM PF02608 YP_002037481.1 identified by match to protein family HMM PF00005 YP_002037482.1 identified by match to protein family HMM PF02653 YP_002037483.1 identified by match to protein family HMM PF02653 YP_002037486.1 identified by match to protein family HMM PF00665 YP_002037487.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002037488.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002037490.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002037491.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002037492.1 identified by glimmer; putative YP_002037493.1 identified by glimmer; putative YP_002037494.1 identified by glimmer; putative YP_002037495.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002037497.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002037501.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002037503.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002037504.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_002037505.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002037506.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002037507.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_002037508.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002037509.1 identified by match to protein family HMM PF01594 YP_002037510.1 identified by similarity to GB:AAK75002.1; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002037511.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002037512.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002037513.1 identified by glimmer; putative YP_002037514.1 identified by match to protein family HMM PF01580 YP_002037516.1 identified by match to protein family HMM PF00266 YP_002037517.1 Required for the synthesis of the thiazole moiety YP_002037518.1 contains potential frameshift; identified by glimmer; putative YP_002037519.1 contains potential frameshift YP_002037522.1 identified by glimmer; putative YP_002037523.1 identified by similarity to GB:AAK99594.1; match to protein family HMM PF02384 YP_002037524.1 identified by match to protein family HMM PF01420 YP_002037526.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_002037527.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002037528.1 identified by match to protein family HMM PF01420 YP_002037529.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002037530.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002037531.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_002037532.1 Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002037533.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002037534.1 contains potential frameshift; identified by match to protein family HMM PF00224 YP_002037535.1 contains potential frameshift; identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_002037536.1 identified by glimmer; putative YP_002037541.1 identified by glimmer; putative YP_002037542.1 identified by match to protein family HMM PF03773 YP_002037544.1 identified by similarity to GB:AAK99612.1; match to protein family HMM PF00575 YP_002037545.1 identified by glimmer; putative YP_002037546.1 identified by match to protein family HMM PF04024 YP_002037547.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002037548.1 identified by match to protein family HMM PF02687 YP_002037549.1 identified by match to protein family HMM PF01988 YP_002037550.1 identified by match to protein family HMM PF00665 YP_002037551.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002037553.1 identified by match to protein family HMM PF02371 YP_002037554.1 identified by glimmer; putative YP_002037555.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002037556.1 identified by match to protein family HMM PF03435 YP_002037557.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_002037558.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_002037559.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381 YP_002037560.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002037562.1 identified by match to protein family HMM PF02517 YP_002037564.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002037565.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002037566.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002037567.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01473 YP_002037568.1 contains potential frameshift; identified by match to protein family HMM PF00696; match to protein family HMM TIGR01027 YP_002037569.1 contains potential frameshift; identified by match to protein family HMM PF01472 YP_002037570.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002037571.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002037572.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002037573.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. YP_002037574.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_002037575.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002037576.1 identified by match to protein family HMM PF08020 YP_002037579.1 identified by match to protein family HMM PF01609 YP_002037581.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002037582.1 Catalyzes the phosphorylation of UMP to UDP YP_002037583.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002037585.1 identified by match to protein family HMM PF06855 YP_002037586.1 identified by match to protein family HMM PF02562 YP_002037587.1 identified by match to protein family HMM PF00583 YP_002037588.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 YP_002037589.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002037591.1 identified by match to protein family HMM PF00005 YP_002037592.1 identified by glimmer; putative YP_002037593.1 identified by glimmer; putative YP_002037594.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002037595.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002037596.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002037597.1 identified by match to protein family HMM PF00903 YP_002037598.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002037599.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002037600.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01832 YP_002037601.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002037602.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002037603.1 identified by match to protein family HMM PF01219 YP_002037604.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002037605.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002037606.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002037607.1 identified by match to protein family HMM PF07690 YP_002037608.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002037609.1 also known as vacB; identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002037610.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002037611.1 with TehA confers resistance to tellurite YP_002037612.1 identified by match to protein family HMM PF06054 YP_002037613.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002037614.1 identified by match to protein family HMM PF01596; match to protein family HMM PF08241 YP_002037615.1 contains potential frameshift YP_002037616.1 contains potential frameshift YP_002037617.1 contains potential frameshift YP_002037620.1 identified by match to protein family HMM PF00300 YP_002037621.1 identified by match to protein family HMM PF04073 YP_002037622.1 identified by match to protein family HMM PF04018 YP_002037623.1 identified by glimmer; putative YP_002037624.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002037625.1 identified by match to protein family HMM PF00293 YP_002037627.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002037628.1 identified by match to protein family HMM PF04394 YP_002037629.1 3'-5' exonuclease of DNA polymerase III YP_002037630.1 identified by match to protein family HMM PF03009 YP_002037631.1 identified by match to protein family HMM PF01609 YP_002037632.1 identified by match to protein family HMM PF01710 YP_002037635.1 identified by match to protein family HMM PF02683 YP_002037636.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002037637.1 identified by match to protein family HMM PF00324 YP_002037638.1 identified by match to protein family HMM PF01297 YP_002037639.1 contains potential frameshift; identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002037640.1 contains potential frameshift YP_002037641.1 contains potential frameshift; identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002037642.1 identified by match to protein family HMM PF04270 YP_002037643.1 identified by glimmer; putative YP_002037644.1 contains potential frameshift YP_002037645.1 contains potential frameshift; identified by match to protein family HMM PF07687; match to protein family HMM TIGR01882 YP_002037646.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_002037647.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_002037648.1 identified by match to protein family HMM PF04138 YP_002037649.1 identified by match to protein family HMM PF06177 YP_002037650.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002037651.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002037652.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002037653.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002037654.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002037655.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002037656.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00536 YP_002037657.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_002037658.1 identified by match to protein family HMM PF00583 YP_002037659.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002037662.1 identified by match to protein family HMM PF06207 YP_002037663.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002037665.1 identified by glimmer; putative YP_002037666.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36; identified by match to protein family HMM PF01497 YP_002037667.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36.; identified by match to protein family HMM PF01032 YP_002037668.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36.; identified by match to protein family HMM PF01032 YP_002037669.1 Ulijasz AT, J Bacteriol. 2004 Dec;186(23):8123-36.; identified by match to protein family HMM PF00005 YP_002037671.1 identified by match to protein family HMM PF03389 YP_002037673.1 identified by match to protein family HMM TIGR01714 YP_002037676.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002037677.1 identified by similarity to RF:ZP_00404330.1 YP_002037680.1 identified by match to protein family HMM PF03747 YP_002037681.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002037682.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_002037683.1 contains potential frameshift YP_002037684.1 contains potential frameshift YP_002037685.1 identified by glimmer; putative YP_002037686.1 identified by match to protein family HMM TIGR01716 YP_002037687.1 identified by glimmer; putative YP_002037688.1 identified by glimmer; putative YP_002037690.1 identified by glimmer; putative YP_002037691.1 identified by glimmer; putative YP_002037692.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002037693.1 identified by glimmer; putative YP_002037696.1 identified by match to protein family HMM PF01381 YP_002037698.1 identified by match to protein family HMM PF01098 YP_002037699.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002037700.1 identified by match to protein family HMM PF04392 YP_002037701.1 identified by match to protein family HMM PF02653 YP_002037702.1 identified by match to protein family HMM PF00005 YP_002037703.1 synthesizes RNA primers at the replication forks YP_002037704.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002037705.1 identified by match to protein family HMM PF01883 YP_002037706.1 identified by match to protein family HMM PF00534 YP_002037707.1 identified by match to protein family HMM PF00534 YP_002037708.1 identified by match to protein family HMM PF04024 YP_002037710.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002037712.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002037713.1 identified by match to protein family HMM PF00583 YP_002037714.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085; match to protein family HMM PF08279 YP_002037715.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_002037717.1 identified by match to protein family HMM PF01609 YP_002037718.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002037719.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002037720.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002037721.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002037723.1 identified by match to protein family HMM PF08866 YP_002037724.1 identified by match to protein family HMM PF00266 YP_002037725.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002037726.1 identified by match to protein family HMM PF01928 YP_002037727.1 identified by match to protein family HMM PF04607 YP_002037728.1 catalyzes the phosphorylation of NAD to NADP YP_002037729.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002037730.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002037731.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002037732.1 identified by match to protein family HMM PF06912 YP_002037733.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002037734.1 identified by match to protein family HMM PF04327 YP_002037735.1 involved in the peptidyltransferase reaction during translation YP_002037738.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002037739.1 identified by match to protein family HMM PF02588 YP_002037740.1 identified by glimmer; putative YP_002037741.1 identified by match to protein family HMM PF00216 YP_002037742.1 identified by match to protein family HMM PF00005 YP_002037743.1 identified by match to protein family HMM TIGR01716 YP_002037744.1 identified by match to protein family HMM PF07690 YP_002037745.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002037746.1 contains potential frameshift; identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_002037747.1 contains potential frameshift YP_002037748.1 identified by match to protein family HMM PF00171 YP_002037749.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002037750.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002037751.1 Spatafora,G.A. 1992 Inf.& Imm.; identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092 YP_002037752.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002037755.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002037756.1 identified by match to protein family HMM PF07997 YP_002037757.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002037758.1 identified by match to protein family HMM PF00589 YP_002037759.1 identified by match to protein family HMM PF01710 YP_002037760.1 identified by match to protein family HMM TIGR02774 YP_002037761.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002037763.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002037764.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167 YP_002037765.1 identified by match to protein family HMM PF01609 YP_002037766.1 identified by glimmer; putative YP_002037767.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002037768.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002037769.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080 YP_002037770.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_002037771.1 Morris,T.W. 1994 Journ.Biol.Chem.; identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002037772.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002037773.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain YP_002037774.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002037775.1 identified by match to protein family HMM PF00676 YP_002037776.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002037777.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002037778.1 identified by match to protein family HMM PF00293 YP_002037779.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002037781.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002037782.1 identified by match to protein family HMM PF03610 YP_002037783.1 Adamou JE, Infect Immun. 2001 Feb;69(2):949-58. c; identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002037784.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002037785.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002037786.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_002037787.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002037788.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002037789.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002037791.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_002037792.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853 YP_002037793.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823 YP_002037794.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002037795.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_002037796.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_002037797.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_002037798.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_002037799.1 identified by glimmer; putative YP_002037804.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002037805.1 identified by match to protein family HMM PF00149 YP_002037806.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002037807.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002037808.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002037809.1 identified by match to protein family HMM PF00348 YP_002037810.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002037811.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002037812.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002037814.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002037817.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326 YP_002037819.1 identified by match to protein family HMM PF01226 YP_002037820.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002037821.1 negatively supercoils closed circular double-stranded DNA YP_002037822.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002037823.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_002037824.1 identified by glimmer; putative YP_002037826.1 identified by match to protein family HMM PF00753 YP_002037827.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002037828.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002037829.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002037830.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002037831.1 identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114 YP_002037832.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. YP_002037835.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002037836.1 identified by match to protein family HMM PF00293 YP_002037837.1 identified by match to protein family HMM PF00583 YP_002037839.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002037840.1 identified by match to protein family HMM PF02517 YP_002037841.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002037842.1 identified by match to protein family HMM PF00005 YP_002037843.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002037844.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002037845.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002037846.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002037847.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470 YP_002037848.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002037849.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_002037857.1 identified by match to protein family HMM PF06961 YP_002037858.1 identified by similarity to SP:Q8DPJ4; match to protein family HMM PF00180; match to protein family HMM TIGR00169 YP_002037860.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502 YP_002037861.1 identified by match to protein family HMM PF04237 YP_002037863.1 contains potential frameshift YP_002037864.1 identified by match to protein family HMM PF04304 YP_002037865.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002037866.1 identified by match to protein family HMM PF04087 YP_002037867.1 identified by glimmer; putative YP_002037868.1 identified by glimmer; putative YP_002037869.1 DNA processing chain A: Also known as smf protein (name of uncharacterized protein in E. coli); identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002037870.1 identified by match to protein family HMM PF00483 YP_002037871.1 identified by match to protein family HMM PF00892 YP_002037872.1 identified by match to protein family HMM PF01633; match to protein family HMM PF01636 YP_002037873.1 identified by match to protein family HMM PF08240 YP_002037874.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002037875.1 identified by match to protein family HMM PF01943 YP_002037876.1 identified by match to protein family HMM PF04991 YP_002037877.1 identified by match to protein family HMM PF04991 YP_002037878.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002037879.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002037880.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002037881.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002037882.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002037883.1 identified by match to protein family HMM PF02620 YP_002037884.1 identified by glimmer; putative YP_002037885.1 identified by match to protein family HMM PF00005 YP_002037886.1 putative metalloprotease YP_002037887.1 identified by match to protein family HMM PF04011 YP_002037888.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002037889.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002037890.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002037891.1 identified by glimmer; putative YP_002037892.1 identified by match to protein family HMM PF09148 YP_002037893.1 identified by match to protein family HMM PF01966 YP_002037894.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002037895.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002037896.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002037897.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002037898.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805 YP_002037899.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002037900.1 identified by match to protein family HMM PF01368 YP_002037901.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002037902.1 identified by glimmer; putative YP_002037905.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002037907.1 identified by match to protein family HMM PF00005 YP_002037914.1 identified by match to protein family HMM PF05717 YP_002037916.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_002037917.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002037918.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_002037919.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_002037920.1 Takase, K. (1994) Journ. Biol. Chem. 269(15) 11037-11044; identified by match to protein family HMM PF01992 YP_002037921.1 Takase, K. (1994) Journ. Biol. Chem. 269(15) 11037-11044 YP_002037922.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_002037923.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_002037924.1 identified by glimmer; putative YP_002037925.1 identified by match to protein family HMM PF00480 YP_002037926.1 identified by similarity to RF:ZP_00403965.1; match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002037927.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973 YP_002037928.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002037929.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_002037930.1 identified by match to protein family HMM PF00701 YP_002037931.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002037932.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002037933.1 identified by match to protein family HMM PF02517 YP_002037937.1 identified by glimmer; putative YP_002037939.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_002037940.1 identified by similarity to RF:YP_133682.1 YP_002037941.1 identified by match to protein family HMM PF00877 YP_002037945.1 identified by match to protein family HMM PF07275 YP_002037947.1 identified by match to protein family HMM PF01610 YP_002037948.1 identified by match to protein family HMM PF01610 YP_002037949.1 identified by match to protein family HMM PF00398 YP_002037950.1 identified by match to protein family HMM PF01381; match to protein family HMM PF02486; match to protein family HMM PF07764 YP_002037951.1 identified by match to protein family HMM PF01580 YP_002037952.1 identified by match to protein family HMM PF06125 YP_002037953.1 identified by match to protein family HMM PF06125 YP_002037954.1 identified by glimmer; putative YP_002037955.1 identified by match to protein family HMM PF01381 YP_002037958.1 identified by match to protein family HMM PF03432 YP_002037959.1 identified by match to protein family HMM PF05713 YP_002037961.1 identified by glimmer; putative YP_002037962.1 identified by match to protein family HMM PF00580 YP_002037964.1 identified by glimmer; putative YP_002037966.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002037969.1 identified by glimmer; putative YP_002037970.1 identified by glimmer; putative YP_002037976.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_002037977.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002037980.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF02384; match to protein family HMM PF04851 YP_002037983.1 identified by match to protein family HMM PF01551; match to protein family HMM PF05257 YP_002037988.1 identified by match to protein family HMM PF02534 YP_002037991.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002037992.1 identified by match to protein family HMM TIGR01654 YP_002037995.1 identified by match to protein family HMM PF02517 YP_002037999.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002038000.1 identified by match to protein family HMM PF06970 YP_002038002.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002038003.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002038004.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002038005.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038006.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038007.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002038008.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002038009.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002038010.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002038012.1 identified by glimmer; putative YP_002038013.1 identified by match to protein family HMM PF00535 YP_002038014.1 identified by match to protein family HMM PF00534 YP_002038015.1 identified by match to protein family HMM PF04991 YP_002038016.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002038017.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002038018.1 identified by match to protein family HMM PF01202 YP_002038019.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002038020.1 identified by match to protein family HMM PF06133 YP_002038021.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002038022.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002038023.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002038024.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002038025.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_002038027.1 identified by glimmer; putative YP_002038028.1 identified by match to protein family HMM PF00005 YP_002038029.1 converts 1,4-alpha-D-glucans to maltodextrin YP_002038030.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002038031.1 identified by match to protein family HMM PF04525 YP_002038032.1 Ware, D.; (2005) J.Microb. 43:398-405; identified by match to protein family HMM PF01547 YP_002038033.1 Ware, D.; (2005) J.Microb. 43:398-405; identified by match to protein family HMM PF00528 YP_002038034.1 Ware, D.; (2005) J.Microb. 43:398-405; identified by match to protein family HMM PF00528 YP_002038035.1 Ware, D.; (2005) J.Microb. 43:398-405; identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002038036.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002038037.1 contains potential frameshift YP_002038038.1 contains potential frameshift YP_002038039.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002038040.1 contains potential frameshift; identified by match to protein family HMM PF00392 YP_002038041.1 contains potential frameshift YP_002038042.1 identified by match to protein family HMM PF00497 YP_002038043.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002038044.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002038045.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002038046.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002038047.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002038048.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002038050.1 identified by match to protein family HMM PF01189 YP_002038051.1 identified by match to protein family HMM PF00459 YP_002038052.1 identified by glimmer; putative YP_002038053.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002038054.1 identified by glimmer; putative YP_002038055.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_002038056.1 identified by match to protein family HMM PF01643 YP_002038057.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002038059.1 identified by match to protein family HMM PF06103 YP_002038060.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002038061.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002038062.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002038063.1 identified by similarity to RF:NP_358865.1; match to protein family HMM PF01182 YP_002038064.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002038065.1 identified by match to protein family HMM PF01473 YP_002038066.1 identified by match to protein family HMM PF00583 YP_002038067.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002038068.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002038070.1 identified by match to protein family HMM PF01381 YP_002038071.1 identified by glimmer; putative YP_002038072.1 contains potential frameshift YP_002038073.1 contains potential frameshift YP_002038074.1 identified by match to protein family HMM PF01136 YP_002038076.1 identified by match to protein family HMM PF01136 YP_002038077.1 identified by similarity to GB:AAL00089.1 YP_002038079.1 identified by match to protein family HMM PF01555 YP_002038080.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002038081.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002038082.1 identified by match to protein family HMM PF00892 YP_002038083.1 identified by glimmer; putative YP_002038085.1 identified by match to protein family HMM PF00657 YP_002038086.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002038088.1 identified by glimmer; putative YP_002038089.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002038090.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002038091.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002038093.1 identified by match to protein family HMM PF00005 YP_002038094.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002038095.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002038096.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_002038097.1 identified by match to protein family HMM PF00583 YP_002038098.1 identified by match to protein family HMM PF08876 YP_002038099.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002038100.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002038101.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002038102.1 contains potential frameshift; identified by match to protein family HMM PF02852 YP_002038103.1 contains potential frameshift; identified by match to protein family HMM PF07992 YP_002038104.1 identified by glimmer; putative YP_002038105.1 identified by match to protein family HMM PF02424 YP_002038106.1 identified by match to protein family HMM PF03358 YP_002038107.1 identified by match to protein family HMM PF03358 YP_002038108.1 identified by glimmer; putative YP_002038109.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002038110.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002038111.1 identified by glimmer; putative YP_002038112.1 identified by match to protein family HMM PF00248 YP_002038113.1 Vollmer, W. (2000)J.Biol. Chem. 275, 20496-20501.; identified by similarity to GB:CAB96552.1; match to protein family HMM PF01522 YP_002038115.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_002038116.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002038120.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002038121.1 identified by glimmer; putative YP_002038122.1 identified by match to protein family HMM PF00230 YP_002038123.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06458; match to protein family HMM TIGR01167 YP_002038128.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002038129.1 identified by match to protein family HMM TIGR01295 YP_002038130.1 identified by match to protein family HMM PF00497 YP_002038131.1 identified by match to protein family HMM PF00005 YP_002038132.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002038133.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002038134.1 identified by match to protein family HMM PF01594 YP_002038136.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002038137.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002038138.1 contains potential frameshift; Martin-Galiano, A.J. (2001) Mol.Micr. 41(6), 1327-1338; identified by match to protein family HMM PF00231 YP_002038139.1 contains potential frameshift; Martin-Galiano, A.J. (2001) Mol.Micr. 41(6), 1327-1338; identified by match to protein family HMM PF00231 YP_002038140.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002038141.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002038142.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002038143.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002038144.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002038147.1 identified by match to protein family HMM PF00583 YP_002038148.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002038149.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002038150.1 identified by match to protein family HMM PF00583 YP_002038151.1 identified by match to protein family HMM PF00583 YP_002038152.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002038153.1 identified by glimmer; putative YP_002038154.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002038155.1 identified by match to protein family HMM PF00155 YP_002038156.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_002038157.1 contains potential frameshift; identified by match to protein family HMM PF00005 YP_002038158.1 contains potential frameshift; identified by glimmer; putative YP_002038159.1 contains potential frameshift; identified by glimmer; putative YP_002038160.1 identified by match to protein family HMM PF00496 YP_002038161.1 identified by match to protein family HMM PF01943 YP_002038162.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine YP_002038163.1 identified by match to protein family HMM PF05532 YP_002038164.1 identified by match to protein family HMM PF08820 YP_002038166.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002038167.1 identified by match to protein family HMM PF01541 YP_002038168.1 identified by match to protein family HMM PF05175 YP_002038169.1 identified by glimmer; putative YP_002038170.1 identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002038171.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002038172.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002038173.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002038174.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002038175.1 identified by match to protein family HMM PF00903 YP_002038176.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002038178.1 identified by glimmer; putative YP_002038179.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002038180.1 identified by match to protein family HMM PF03883 YP_002038183.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002038184.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli YP_002038185.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002038186.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002038187.1 identified by match to protein family HMM PF00005 YP_002038188.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_002038189.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002038190.1 identified by glimmer; putative YP_002038191.1 identified by match to protein family HMM PF06619 YP_002038192.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002038193.1 identified by match to protein family HMM PF07949 YP_002038194.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002038195.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002038196.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002038197.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002038198.1 identified by glimmer; putative YP_002038199.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002038200.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002038201.1 binds and unfolds substrates as part of the ClpXP protease YP_002038203.1 identified by match to protein family HMM PF00186 YP_002038204.1 identified by match to protein family HMM PF00210 YP_002038205.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01473 YP_002038206.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002038207.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002038208.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002038209.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002038210.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002038211.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002038213.1 identified by match to protein family HMM PF00857 YP_002038214.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002038215.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002038216.1 identified by match to protein family HMM PF07690 YP_002038217.1 Involved in disulfide oxidoreductase activity and electron transport YP_002038218.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002038219.1 identified by match to protein family HMM PF07685 YP_002038220.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002038221.1 identified by match to protein family HMM PF00665 YP_002038222.1 contains potential frameshift YP_002038223.1 contains potential frameshift YP_002038224.1 identified by glimmer; putative YP_002038226.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002038227.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002038229.1 identified by match to protein family HMM PF07690 YP_002038231.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002038232.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002038235.1 identified by match to protein family HMM PF00535 YP_002038236.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002038237.1 identified by match to protein family HMM PF01266 YP_002038238.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002038239.1 identified by glimmer; putative YP_002038240.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002038241.1 identified by match to protein family HMM PF01553 YP_002038242.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779 YP_002038243.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002038245.1 identified by glimmer; putative YP_002038247.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002038248.1 identified by match to protein family HMM PF02518 YP_002038249.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002038252.1 identified by match to protein family HMM PF02082 YP_002038253.1 identified by match to protein family HMM PF00149 YP_002038254.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_002038256.1 identified by glimmer; putative YP_002038259.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002038260.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002038261.1 identified by match to protein family HMM PF00753 YP_002038262.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_002038263.1 Dintilhac A, Mol Microbiol. 1997 Aug;25(4):727-39.; identified by match to protein family HMM PF00005 YP_002038264.1 Dintilhac A, Mol Microbiol. 1997 Aug;25(4):727-39.; identified by match to protein family HMM PF00950 YP_002038265.1 Dintilhac A, Mol Microbiol. 1997 Aug;25(4):727-39.; identified by match to protein family HMM PF01297 YP_002038266.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002038267.1 identified by match to protein family HMM PF02687 YP_002038268.1 identified by match to protein family HMM PF00005 YP_002038270.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002038272.1 identified by glimmer; putative YP_002038273.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002038274.1 identified by glimmer; putative YP_002038275.1 identified by match to protein family HMM PF05103 YP_002038276.1 identified by match to protein family HMM PF01479 YP_002038277.1 identified by match to protein family HMM PF02325 YP_002038278.1 identified by match to protein family HMM PF04472 YP_002038279.1 identified by match to protein family HMM TIGR00044 YP_002038280.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002038281.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002038282.1 identified by glimmer; putative YP_002038283.1 identified by match to protein family HMM PF00293 YP_002038284.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002038285.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002038286.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002038287.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002038288.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002038289.1 identified by match to protein family HMM PF00480 YP_002038290.1 Steenbergen, S.M.: J Bacteriol. 2006 Sep;188(17):6195-206.; identified by match to protein family HMM PF00701 YP_002038291.1 identified by match to protein family HMM PF04854 YP_002038293.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002038294.1 identified by match to protein family HMM PF00528 YP_002038295.1 identified by match to protein family HMM PF00528 YP_002038296.1 identified by match to protein family HMM PF01547 YP_002038297.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002038298.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002038299.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002038300.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973 YP_002038301.1 identified by match to protein family HMM PF00528 YP_002038302.1 identified by match to protein family HMM PF00528 YP_002038303.1 identified by match to protein family HMM PF01547 YP_002038304.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002038305.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973; match to protein family HMM TIGR01167 YP_002038307.1 identified by match to protein family HMM PF05448 YP_002038308.1 catalyzes branch migration in Holliday junction intermediates YP_002038309.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002038310.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002038311.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002038312.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002038313.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002038315.1 identified by match to protein family HMM PF00005 YP_002038317.1 identified by glimmer; putative YP_002038320.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002038321.1 identified by match to protein family HMM PF00881 YP_002038322.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_002038323.1 identified by glimmer; putative YP_002038324.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002038325.1 identified by match to protein family HMM PF00392 YP_002038326.1 identified by match to protein family HMM PF00005 YP_002038329.1 identified by match to protein family HMM PF00005 YP_002038330.1 identified by match to protein family HMM PF09335 YP_002038331.1 identified by match to protein family HMM PF00480 YP_002038332.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996 YP_002038334.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002038335.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002038336.1 identified by match to protein family HMM TIGR00532 YP_002038337.1 Wilding, et. al. (2000) J. Bacteriol. 182, 4319-4327]; identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835 YP_002038339.1 identified by match to protein family HMM PF01609 YP_002038341.1 identified by match to protein family HMM PF06738 YP_002038342.1 contains potential frameshift; identified by match to protein family HMM PF00069; match to protein family HMM PF03793 YP_002038343.1 contains potential frameshift YP_002038344.1 identified by match to protein family HMM PF00481 YP_002038345.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002038346.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002038347.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002038348.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002038349.1 Essential for recycling GMP and indirectly, cGMP YP_002038350.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319 YP_002038352.1 identified by glimmer; putative YP_002038353.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002038354.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002038356.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_002038357.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002038358.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002038359.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_002038360.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002038361.1 identified by match to protein family HMM PF01544 YP_002038362.1 identified by match to protein family HMM PF00924 YP_002038364.1 involved in the import of serine and threonine coupled with the import of sodium YP_002038365.1 identified by match to protein family HMM PF06081 YP_002038366.1 identified by match to protein family HMM PF01047 YP_002038368.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002038369.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002038370.1 identified by match to protein family HMM PF00230 YP_002038372.1 identified by glimmer; putative YP_002038373.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002038374.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002038375.1 contains potential frameshift YP_002038376.1 contains potential frameshift; identified by match to protein family HMM PF06325 YP_002038377.1 identified by match to protein family HMM PF00293 YP_002038378.1 identified by glimmer; putative YP_002038379.1 identified by glimmer; putative YP_002038380.1 identified by match to protein family HMM PF03681 YP_002038381.1 identified by match to protein family HMM PF07927 YP_002038384.1 identified by match to protein family HMM PF00004 YP_002038385.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_002038386.1 identified by match to protein family HMM PF00528 YP_002038387.1 identified by match to protein family HMM PF00528 YP_002038388.1 identified by match to protein family HMM PF01547 YP_002038389.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002038390.1 Hemsley, C.; 2003 J. Bact, 22:6640-6647; identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002038391.1 identified by match to protein family HMM PF04226 YP_002038394.1 identified by match to protein family HMM PF03780 YP_002038395.1 identified by match to protein family HMM PF05532 YP_002038396.1 identified by glimmer; putative YP_002038397.1 identified by glimmer; putative YP_002038398.1 identified by match to protein family HMM PF03781 YP_002038399.1 contains potential frameshift YP_002038400.1 contains potential frameshift YP_002038401.1 identified by match to protein family HMM PF02255 YP_002038402.1 identified by match to protein family HMM PF02302 YP_002038403.1 contains potential frameshift YP_002038404.1 contains potential frameshift YP_002038405.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002038406.1 identified by match to protein family HMM PF00480 YP_002038407.1 identified by match to protein family HMM PF00583 YP_002038408.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002038409.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_002038411.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002038412.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002038413.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002038414.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002038415.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002038416.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002038417.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002038418.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002038419.1 identified by match to protein family HMM PF02308 YP_002038420.1 identified by match to protein family HMM PF00528 YP_002038421.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002038423.1 identified by match to protein family HMM PF08975 YP_002038424.1 identified by glimmer; putative YP_002038425.1 identified by match to protein family HMM PF01041 YP_002038426.1 identified by match to protein family HMM PF02397 YP_002038427.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038428.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038429.1 identified by match to protein family HMM PF04239 YP_002038432.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002038434.1 identified by glimmer; putative YP_002038435.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002038436.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002038437.1 Lacks,S.; J. Mol. Biol. 250 (2), 144-155 (1995); identified by match to protein family HMM PF04556 YP_002038438.1 Lacks,S.; J. Mol. Biol. 250 (2), 144-155 (1995); identified by match to protein family HMM PF01555 YP_002038439.1 Lacks,S.; J. Mol. Biol. 250 (2), 144-155 (1995); identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571 YP_002038440.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002038441.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002038442.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_002038443.1 identified by match to protein family HMM PF00356 YP_002038444.1 contains potential frameshift YP_002038445.1 contains potential frameshift; identified by match to protein family HMM PF08240 YP_002038446.1 identified by match to protein family HMM PF00376 YP_002038447.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002038448.1 identified by match to protein family HMM PF00440 YP_002038449.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002038450.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002038451.1 identified by match to protein family HMM PF00005 YP_002038452.1 identified by match to protein family HMM PF07366 YP_002038453.1 identified by match to protein family HMM PF01047 YP_002038454.1 identified by match to protein family HMM PF08957 YP_002038455.1 identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107 YP_002038456.1 identified by glimmer; putative YP_002038457.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002038458.1 identified by match to protein family HMM PF01032 YP_002038459.1 identified by match to protein family HMM PF01032 YP_002038460.1 identified by match to protein family HMM PF00005 YP_002038461.1 identified by match to protein family HMM PF01497 YP_002038462.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002038463.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002038464.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002038465.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002038466.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002038467.1 identified by match to protein family HMM PF00571 YP_002038468.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002038469.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002038470.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002038472.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002038473.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992 YP_002038474.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002038478.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002038479.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002038480.1 identified by match to protein family HMM PF00528 YP_002038481.1 identified by match to protein family HMM PF00528 YP_002038482.1 identified by match to protein family HMM PF00496 YP_002038483.1 identified by match to protein family HMM PF01609 YP_002038484.1 identified by glimmer; putative YP_002038485.1 identified by match to protein family HMM PF00128 YP_002038486.1 identified by match to protein family HMM PF00528 YP_002038487.1 identified by match to protein family HMM PF00528 YP_002038488.1 identified by match to protein family HMM PF01547 YP_002038489.1 identified by match to protein family HMM PF02065 YP_002038490.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002038491.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002038492.1 contains potential frameshift; identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002038493.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002038494.1 identified by match to protein family HMM PF04167 YP_002038496.1 identified by match to protein family HMM PF01381 YP_002038497.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002038500.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002038501.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002038502.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002038503.1 identified by match to protein family HMM PF00106 YP_002038504.1 identified by match to protein family HMM PF01588 YP_002038505.1 identified by match to protein family HMM PF00085 YP_002038507.1 identified by match to protein family HMM PF01473 YP_002038509.1 identified by match to protein family HMM PF04397 YP_002038510.1 identified by match to protein family HMM PF01569 YP_002038512.1 identified by match to protein family HMM PF00005 YP_002038517.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002038518.1 identified by match to protein family HMM PF01289 YP_002038522.1 identified by match to protein family HMM PF01609 YP_002038529.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01510 YP_002038530.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002038531.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002038532.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002038533.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002038534.1 identified by match to protein family HMM PF00583 YP_002038535.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002038536.1 identified by glimmer; putative YP_002038537.1 identified by match to protein family HMM PF01381 YP_002038538.1 identified by glimmer; putative YP_002038539.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002038540.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002038542.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002038543.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002038544.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002038545.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002038546.1 identified by match to protein family HMM PF01223 YP_002038548.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002038549.1 identified by glimmer; putative YP_002038551.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002038552.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002038553.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002038554.1 identified by match to protein family HMM PF01027 YP_002038555.1 contains potential frameshift; identified by match to protein family HMM PF00588 YP_002038556.1 contains potential frameshift; identified by match to protein family HMM PF08032 YP_002038557.1 catalyzes the hydrolysis of acylphosphate YP_002038558.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_002038559.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002038560.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_002038561.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002038562.1 identified by match to protein family HMM PF01336 YP_002038563.1 identified by match to protein family HMM PF02646 YP_002038564.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_002038565.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_002038566.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002038567.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002038569.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03608 YP_002038570.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002038571.1 identified by glimmer; putative YP_002038573.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002038574.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002038575.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002038576.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002038577.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002038579.1 identified by match to protein family HMM PF00582 YP_002038580.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002038581.1 identified by match to protein family HMM PF00710 YP_002038582.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_002038583.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002038584.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002038585.1 identified by match to protein family HMM PF01061 YP_002038586.1 identified by match to protein family HMM PF00005 YP_002038590.1 Modulates Rho-dependent transcription termination YP_002038591.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002038592.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002038593.1 identified by match to protein family HMM PF00849 YP_002038594.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002038595.1 identified by match to protein family HMM PF02687 YP_002038596.1 identified by match to protein family HMM PF01710 YP_002038597.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002038598.1 identified by match to protein family HMM PF03600; match to protein family HMM PF07158 YP_002038600.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002038601.1 identified by match to protein family HMM PF00232 YP_002038602.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002038603.1 identified by match to protein family HMM PF02302 YP_002038604.1 identified by match to protein family HMM PF02255 YP_002038605.1 identified by match to protein family HMM PF00465 YP_002038606.1 identified by glimmer; putative YP_002038607.1 identified by glimmer; putative YP_002038608.1 identified by match to protein family HMM PF01451 YP_002038609.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002038610.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002038612.1 identified by match to protein family HMM PF00874; match to protein family HMM PF08279 YP_002038613.1 contains potential frameshift; identified by match to protein family HMM PF00596 YP_002038614.1 contains potential frameshift YP_002038615.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_002038616.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_002038617.1 identified by match to protein family HMM PF00359 YP_002038618.1 identified by match to protein family HMM PF02302 YP_002038619.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002038621.1 identified by glimmer; putative YP_002038622.1 identified by match to protein family HMM PF02096 YP_002038623.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002038625.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002038627.1 identified by glimmer; putative YP_002038631.1 identified by glimmer; putative YP_002038632.1 identified by match to protein family HMM TIGR02532 YP_002038633.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002038634.1 identified by match to protein family HMM PF00482 YP_002038635.1 identified by match to protein family HMM PF00437 YP_002038636.1 identified by match to protein family HMM PF06279 YP_002038637.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002038638.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002038639.1 identified by match to protein family HMM PF01757 YP_002038640.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002038641.1 identified by match to protein family HMM PF06161 YP_002038642.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002038643.1 identified by match to protein family HMM PF06993 YP_002038645.1 identified by match to protein family HMM PF01476 YP_002038646.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002038647.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002038648.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002038650.1 identified by glimmer; putative YP_002038651.1 identified by glimmer; putative YP_002038652.1 identified by glimmer; putative YP_002038654.1 identified by match to protein family HMM PF00589 YP_002038655.1 identified by glimmer; putative YP_002038656.1 identified by glimmer; putative YP_002038657.1 identified by match to protein family HMM PF00149 YP_002038658.1 identified by match to protein family HMM PF00383 YP_002038659.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002038660.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002038662.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002038663.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038665.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002038666.1 This protein performs the mismatch recognition step during the DNA repair process YP_002038667.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_002038668.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002038669.1 identified by match to protein family HMM PF01609 YP_002038670.1 identified by match to protein family HMM PF06172 YP_002038671.1 Novak, J Bacteriol. 1999 181(4):1126-33.; identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002038672.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002038674.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002038675.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002038676.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002038677.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002038679.1 identified by glimmer; putative YP_002038680.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002038681.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002038682.1 identified by match to protein family HMM PF01694 YP_002038683.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002038684.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002038685.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_002038686.1 identified by match to protein family HMM PF00892 YP_002038687.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_002038688.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002038689.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_002038691.1 identified by match to protein family HMM PF08241 YP_002038694.1 Spatafora,G.A. 1992 Inf.& Imm.; identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002038695.1 amylomaltase; acts to release glucose from maltodextrins YP_002038696.1 identified by match to protein family HMM PF01547 YP_002038697.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154 YP_002038698.1 identified by match to protein family HMM PF00528 YP_002038700.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002038701.1 identified by match to protein family HMM PF02588 YP_002038702.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002038704.1 identified by match to protein family HMM PF02517 YP_002038707.1 identified by match to protein family HMM PF01381 YP_002038709.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002038710.1 identified by match to protein family HMM PF07690 YP_002038711.1 identified by match to protein family HMM TIGR01716 YP_002038713.1 identified by match to protein family HMM PF01883 YP_002038714.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002038715.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002038716.1 identified by match to protein family HMM PF00456 YP_002038717.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002038718.1 identified by match to protein family HMM PF02302 YP_002038719.1 contains potential frameshift; identified by match to protein family HMM PF00359 YP_002038720.1 contains potential frameshift; identified by match to protein family HMM PF00874 YP_002038721.1 contains potential frameshift YP_002038722.1 contains potential frameshift YP_002038723.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002038724.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002038725.1 identified by match to protein family HMM PF01473 YP_002038726.1 identified by match to protein family HMM PF04326 YP_002038730.1 identified by glimmer; putative YP_002038731.1 identified by match to protein family HMM PF00728 YP_002038732.1 identified by match to protein family HMM PF00480 YP_002038733.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_002038734.1 identified by match to protein family HMM PF06824 YP_002038735.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_002038736.1 identified by glimmer; putative YP_002038737.1 identified by glimmer; putative YP_002038738.1 catalyzes the degradation of arginine to citruline and ammonia YP_002038739.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_002038740.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002038741.1 identified by match to protein family HMM PF03606 YP_002038742.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_002038744.1 identified by glimmer; putative YP_002038745.1 identified by match to protein family HMM PF01145 YP_002038746.1 identified by match to protein family HMM PF00465 YP_002038747.1 contains potential frameshift YP_002038748.1 contains potential frameshift; identified by match to protein family HMM PF02952; match to protein family HMM PF07881; match to protein family HMM PF07882 YP_002038749.1 contains potential frameshift; identified by match to protein family HMM PF00596 YP_002038750.1 contains potential frameshift YP_002038751.1 contains potential frameshift; identified by match to protein family HMM PF08305 YP_002038752.1 identified by match to protein family HMM PF02065 YP_002038753.1 identified by glimmer; putative YP_002038754.1 identified by match to protein family HMM PF01120 YP_002038755.1 identified by match to protein family HMM PF00528 YP_002038756.1 identified by match to protein family HMM PF00528 YP_002038757.1 identified by match to protein family HMM PF01547 YP_002038758.1 identified by match to protein family HMM PF00370 YP_002038759.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002038760.1 identified by match to protein family HMM PF01297; match to protein family HMM PF09223 YP_002038761.1 identified by match to protein family HMM PF00950 YP_002038762.1 identified by match to protein family HMM PF00005 YP_002038763.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF01978; match to protein family HMM PF08279 YP_002038764.1 identified by glimmer; putative YP_002038765.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002038766.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_002038767.1 identified by match to protein family HMM PF03062 YP_002038768.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_002038771.1 identified by match to protein family HMM PF00078; match to protein family HMM PF08388 YP_002038774.1 identified by glimmer; putative YP_002038775.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002038776.1 identified by match to protein family HMM PF01266 YP_002038777.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002038778.1 identified by match to protein family HMM PF05043 YP_002038779.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002038780.1 identified by match to protein family HMM PF00724; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002038781.1 identified by match to protein family HMM PF01527 YP_002038782.1 identified by match to protein family HMM PF00665 YP_002038784.1 identified by match to protein family HMM PF01610 YP_002038785.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05062; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002038786.1 identified by match to protein family HMM PF04140 YP_002038787.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002038788.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002038789.1 identified by glimmer; putative YP_002038790.1 identified by glimmer; putative YP_002038791.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002038792.1 identified by match to protein family HMM PF05848 YP_002038793.1 identified by match to protein family HMM PF00005 YP_002038794.1 identified by match to protein family HMM PF09084 YP_002038795.1 identified by match to protein family HMM PF00528 YP_002038797.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08460 YP_002038798.1 identified by match to protein family HMM PF06257 YP_002038799.1 unwinds double stranded DNA YP_002038800.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002038801.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002038802.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002038804.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002038805.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002038806.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002038807.1 identified by match to protein family HMM PF03050 YP_002038809.1 identified by match to protein family HMM PF05717 YP_002038810.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002038811.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002038812.1 identified by match to protein family HMM PF05257 YP_002038813.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002038814.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002038815.1 identified by match to protein family HMM PF02361 YP_002038816.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002038817.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002038818.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002038820.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002038821.1 identified by match to protein family HMM PF05193 YP_002038822.1 identified by glimmer; putative YP_002038823.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002038824.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002038825.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002038826.1 identified by match to protein family HMM PF00005 YP_002038829.1 identified by glimmer; putative YP_002038830.1 identified by match to protein family HMM PF00440 YP_002038831.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002038832.1 identified by match to protein family HMM PF02518 YP_002038833.1 identified by match to protein family HMM PF03047 YP_002038834.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002038835.1 identified by match to protein family HMM PF00089 YP_002038836.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180