-- dump date 20140620_084802 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 488222000001 SEQ_END SEQ_END NC_012466.1 2120234 2120234 DR NC_012466.1; contig end 2120234..2120234 Streptococcus pneumoniae JJA YP_002735124.1 CDS dnaA NC_012466.1 197 1558 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 197..1558 Streptococcus pneumoniae JJA 7680620 YP_002735125.1 CDS dnaN NC_012466.1 1717 2853 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1717..2853 Streptococcus pneumoniae JJA 7679914 YP_002735126.1 CDS SPJ_0003 NC_012466.1 2918 3112 D identified by match to protein family HMM PF06107; hypothetical protein 2918..3112 Streptococcus pneumoniae JJA 7679319 YP_002735127.1 CDS ychF NC_012466.1 3196 4311 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3196..4311 Streptococcus pneumoniae JJA 7678691 YP_002735128.1 CDS pth NC_012466.1 4383 4952 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 4383..4952 Streptococcus pneumoniae JJA 7680072 YP_002735129.1 CDS mfd NC_012466.1 4953 8462 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 4953..8462 Streptococcus pneumoniae JJA 7679721 YP_002735130.1 CDS SPJ_0007 NC_012466.1 8520 8786 D identified by match to protein family HMM PF01479; ribosome-associated heat shock protein implicated in the recycling of the 50S subunit 8520..8786 Streptococcus pneumoniae JJA 7678855 YP_002735131.1 CDS SPJ_0008 NC_012466.1 8779 9147 D identified by match to protein family HMM PF04977; septum formation initiator 8779..9147 Streptococcus pneumoniae JJA 7678515 YP_002735132.1 CDS SPJ_0009 NC_012466.1 9152 9274 D hypothetical protein 9152..9274 Streptococcus pneumoniae JJA 7679871 YP_002735133.1 CDS SPJ_0010 NC_012466.1 9267 10535 D beta-lactamase class A 9267..10535 Streptococcus pneumoniae JJA 7679256 YP_002735134.1 CDS SPJ_0011 NC_012466.1 10532 11809 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) 10532..11809 Streptococcus pneumoniae JJA 7678742 YP_002735135.1 CDS hpt NC_012466.1 11813 12355 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 11813..12355 Streptococcus pneumoniae JJA 7680315 YP_002735136.1 CDS SPJ_0013 NC_012466.1 12371 14329 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; putative Cell division protease FtsH homolog 12371..14329 Streptococcus pneumoniae JJA 7679168 YP_002735137.1 CDS SPJ_0014 NC_012466.1 14451 14930 D competence-specific global transcription modulator 14451..14930 Streptococcus pneumoniae JJA 7678535 YP_002735138.1 CDS SPJ_0022 NC_012466.1 20422 20751 D identified by match to protein family HMM PF01710; transposase 20422..20751 Streptococcus pneumoniae JJA 7680584 YP_002735139.1 CDS SPJ_0024 NC_012466.1 21178 21312 D identified by Glimmer3; putative; hypothetical protein 21178..21312 Streptococcus pneumoniae JJA 7679950 YP_002735140.1 CDS SPJ_0023 NC_012466.1 21303 21509 R transposase complement(21303..21509) Streptococcus pneumoniae JJA 7679232 YP_002735141.1 CDS SPJ_0025 NC_012466.1 21652 21795 R transposase complement(21652..21795) Streptococcus pneumoniae JJA 7679020 YP_002735142.1 CDS SPJ_0026 NC_012466.1 21843 22049 R transposase complement(21843..22049) Streptococcus pneumoniae JJA 7678745 YP_002735143.1 CDS SPJ_0027 NC_012466.1 22366 22602 D hypothetical protein 22366..22602 Streptococcus pneumoniae JJA 7679747 YP_002735144.1 CDS purA NC_012466.1 22791 24119 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 22791..24119 Streptococcus pneumoniae JJA 7680224 YP_002735145.1 CDS SPJ_0029 NC_012466.1 24320 24787 D identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 24320..24787 Streptococcus pneumoniae JJA 7678733 YP_002735146.1 CDS SPJ_0030 NC_012466.1 24996 25712 R identified by match to protein family HMM PF00589; integrase complement(24996..25712) Streptococcus pneumoniae JJA 7679266 YP_002735147.1 CDS SPJ_0031 NC_012466.1 25784 26137 R integrase complement(25784..26137) Streptococcus pneumoniae JJA 7680013 YP_002735148.1 CDS SPJ_0032 NC_012466.1 26192 27262 R identified by match to protein family HMM PF04313; prophage Lp2 protein 6 complement(26192..27262) Streptococcus pneumoniae JJA 7679569 YP_002735149.1 CDS SPJ_0033 NC_012466.1 27279 27659 R identified by match to protein family HMM PF06114; hypothetical protein complement(27279..27659) Streptococcus pneumoniae JJA 7680041 YP_002735150.1 CDS SPJ_0034 NC_012466.1 27672 27935 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; plasmid addiction system poison protein complement(27672..27935) Streptococcus pneumoniae JJA 7678656 YP_002735151.1 CDS SPJ_0035 NC_012466.1 27935 28168 R hypothetical protein complement(27935..28168) Streptococcus pneumoniae JJA 7679123 YP_002735152.1 CDS SPJ_0036 NC_012466.1 28168 28536 R identified by match to protein family HMM PF01381; phage transcriptional regulator, Cro/CI family complement(28168..28536) Streptococcus pneumoniae JJA 7679875 YP_002735153.1 CDS SPJ_0037 NC_012466.1 28834 28965 D identified by Glimmer3; putative; hypothetical protein 28834..28965 Streptococcus pneumoniae JJA 7679242 YP_002735154.1 CDS SPJ_0038 NC_012466.1 29108 29299 D hypothetical protein 29108..29299 Streptococcus pneumoniae JJA 7679988 YP_002735155.1 CDS SPJ_0039 NC_012466.1 29322 29525 D identified by Glimmer3; putative; hypothetical protein 29322..29525 Streptococcus pneumoniae JJA 7680432 YP_002735156.1 CDS SPJ_0041 NC_012466.1 29540 29683 D identified by Glimmer3; putative; hypothetical protein 29540..29683 Streptococcus pneumoniae JJA 7679150 YP_002735157.1 CDS SPJ_0040 NC_012466.1 29680 29847 R hypothetical protein complement(29680..29847) Streptococcus pneumoniae JJA 7680528 YP_002735158.1 CDS SPJ_0042 NC_012466.1 29918 30232 D identified by match to protein family HMM PF01473; lytic amidase (N-acetylmuramoyl-L-alanine amidase) 29918..30232 Streptococcus pneumoniae JJA 7679488 YP_002735159.1 CDS SPJ_0044 NC_012466.1 30322 30471 D identified by Glimmer3; putative; hypothetical protein 30322..30471 Streptococcus pneumoniae JJA 7680156 YP_002735160.1 CDS SPJ_0043 NC_012466.1 30452 30631 R hypothetical protein complement(30452..30631) Streptococcus pneumoniae JJA 7679462 YP_002735161.1 CDS dut NC_012466.1 31227 31670 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 31227..31670 Streptococcus pneumoniae JJA 7678847 YP_002735162.1 CDS SPJ_0046 NC_012466.1 31630 32187 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 31630..32187 Streptococcus pneumoniae JJA 7679832 YP_002735163.1 CDS radA NC_012466.1 32300 33562 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 32300..33562 Streptococcus pneumoniae JJA 7678547 YP_002735164.1 CDS SPJ_0048 NC_012466.1 33635 34132 D identified by match to protein family HMM PF00484; carbonate dehydratase 33635..34132 Streptococcus pneumoniae JJA 7678802 YP_002735165.1 CDS SPJ_0049 NC_012466.1 34157 34816 D hypothetical protein 34157..34816 Streptococcus pneumoniae JJA 7680381 YP_002735166.1 CDS SPJ_0050 NC_012466.1 34809 34940 D identified by Glimmer3; putative; hypothetical protein 34809..34940 Streptococcus pneumoniae JJA 7679768 YP_002735167.1 CDS SPJ_0051 NC_012466.1 35085 36053 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 35085..36053 Streptococcus pneumoniae JJA 7679064 YP_002735168.1 CDS SPJ_0052 NC_012466.1 36175 36468 R transposase complement(36175..36468) Streptococcus pneumoniae JJA 7680383 YP_002735169.1 CDS SPJ_0053 NC_012466.1 36595 36828 R hypothetical protein complement(36595..36828) Streptococcus pneumoniae JJA 7680167 YP_002735170.1 CDS SPJ_0054 NC_012466.1 36786 37112 R identified by Glimmer3; putative; hypothetical protein complement(36786..37112) Streptococcus pneumoniae JJA 7679705 YP_002735171.1 CDS SPJ_0055 NC_012466.1 37152 37466 R hypothetical protein complement(37152..37466) Streptococcus pneumoniae JJA 7678513 YP_002735172.1 CDS SPJ_0056 NC_012466.1 37758 40391 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 37758..40391 Streptococcus pneumoniae JJA 7678873 YP_002735173.1 CDS SPJ_0057 NC_012466.1 40476 40913 D identified by match to protein family HMM PF02629; CoA binding protein 40476..40913 Streptococcus pneumoniae JJA 7680162 YP_002735174.1 CDS SPJ_0058 NC_012466.1 41376 42386 R identified by match to protein family HMM PF03601; membrane protein Spr0034 complement(41376..42386) Streptococcus pneumoniae JJA 7679848 YP_002735175.1 CDS SPJ_0059 NC_012466.1 42535 43704 D catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; aromatic amino acid aminotransferase 42535..43704 Streptococcus pneumoniae JJA 7678627 YP_002735176.1 CDS recO NC_012466.1 43701 44471 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 43701..44471 Streptococcus pneumoniae JJA 7678663 YP_002735177.1 CDS plsX NC_012466.1 44468 45460 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 44468..45460 Streptococcus pneumoniae JJA 7680376 YP_002735178.1 CDS SPJ_0062 NC_012466.1 45466 45699 D hypothetical protein 45466..45699 Streptococcus pneumoniae JJA 7679921 YP_002735179.1 CDS SPJ_0063 NC_012466.1 45742 46035 D mobile genetic element 45742..46035 Streptococcus pneumoniae JJA 7679427 YP_002735180.1 CDS SPJ_0064 NC_012466.1 46238 46468 D identified by match to protein family HMM TIGR01847; hypothetical protein 46238..46468 Streptococcus pneumoniae JJA 7678652 YP_002735181.1 CDS SPJ_0065 NC_012466.1 46471 46596 D identified by Glimmer3; putative; hypothetical protein 46471..46596 Streptococcus pneumoniae JJA 7680106 YP_002735182.1 CDS SPJ_0066 NC_012466.1 47004 47198 D hypothetical protein 47004..47198 Streptococcus pneumoniae JJA 7680406 YP_002735183.1 CDS SPJ_0067 NC_012466.1 47219 48112 D identified by match to protein family HMM PF01381; XRE family transcriptional regulator 47219..48112 Streptococcus pneumoniae JJA 7679135 YP_002735184.1 CDS SPJ_0068 NC_012466.1 48655 48951 D hypothetical protein 48655..48951 Streptococcus pneumoniae JJA 7679376 YP_002735185.1 CDS SPJ_0069 NC_012466.1 48958 50094 D hypothetical protein 48958..50094 Streptococcus pneumoniae JJA 7679852 YP_002735186.1 CDS SPJ_0070 NC_012466.1 50331 50573 D identified by Glimmer3; putative; hypothetical protein 50331..50573 Streptococcus pneumoniae JJA 7680541 YP_002735187.1 CDS SPJ_0071 NC_012466.1 50570 51166 D identified by Glimmer3; putative; hypothetical protein 50570..51166 Streptococcus pneumoniae JJA 7678853 YP_002735188.1 CDS SPJ_0072 NC_012466.1 51147 51638 D identified by Glimmer3; putative; hypothetical protein 51147..51638 Streptococcus pneumoniae JJA 7679656 YP_002735189.1 CDS SPJ_0073 NC_012466.1 52018 54171 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193; transport/processing ATP-binding protein ComA 52018..54171 Streptococcus pneumoniae JJA 7678394 YP_002735190.1 CDS SPJ_0074 NC_012466.1 54184 55533 D identified by match to protein family HMM TIGR01000; transport protein ComB 54184..55533 Streptococcus pneumoniae JJA 7678989 YP_002735191.1 CDS purC NC_012466.1 55703 56410 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 55703..56410 Streptococcus pneumoniae JJA 7679600 YP_002735192.1 CDS SPJ_0076 NC_012466.1 56421 56555 D phosphoribosylaminoimidazole-succinocarboxamide synthase (saicar synthetase) 56421..56555 Streptococcus pneumoniae JJA 7680524 YP_002735193.1 CDS SPJ_0077 NC_012466.1 56612 60337 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 56612..60337 Streptococcus pneumoniae JJA 7680496 YP_002735194.1 CDS purF NC_012466.1 60430 61872 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 60430..61872 Streptococcus pneumoniae JJA 7678681 YP_002735195.1 CDS purM NC_012466.1 61909 62931 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 61909..62931 Streptococcus pneumoniae JJA 7678728 YP_002735196.1 CDS purN NC_012466.1 62928 63473 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 62928..63473 Streptococcus pneumoniae JJA 7680192 YP_002735197.1 CDS SPJ_0081 NC_012466.1 63557 64066 D identified by match to protein family HMM PF04892; teicoplanin resistance protein 63557..64066 Streptococcus pneumoniae JJA 7680016 YP_002735198.1 CDS purH NC_012466.1 64091 65638 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 64091..65638 Streptococcus pneumoniae JJA 7679229 YP_002735199.1 CDS purD NC_012466.1 65760 67022 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 65760..67022 Streptococcus pneumoniae JJA 7679790 YP_002735200.1 CDS purE NC_012466.1 67425 67913 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 67425..67913 Streptococcus pneumoniae JJA 7679437 YP_002735201.1 CDS purK NC_012466.1 67900 68973 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 67900..68973 Streptococcus pneumoniae JJA 7678819 YP_002735202.1 CDS SPJ_0086 NC_012466.1 68996 71383 D identified by Glimmer3; putative; hypothetical protein 68996..71383 Streptococcus pneumoniae JJA 7678456 YP_002735203.1 CDS purB NC_012466.1 71556 72854 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 71556..72854 Streptococcus pneumoniae JJA 7680277 YP_002735204.1 CDS SPJ_0088 NC_012466.1 72909 76847 R identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; beta-N-acetylhexosaminidase complement(72909..76847) Streptococcus pneumoniae JJA 7679542 YP_002735205.1 CDS SPJ_0089 NC_012466.1 77162 77905 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(77162..77905) Streptococcus pneumoniae JJA 7679108 YP_002735206.1 CDS SPJ_0090 NC_012466.1 78226 80013 D identified by match to protein family HMM PF01301; match to protein family HMM PF02449; beta-galactosidase (Lactase) 78226..80013 Streptococcus pneumoniae JJA 7678636 YP_002735207.1 CDS SPJ_0091 NC_012466.1 80010 80486 D identified by match to protein family HMM PF03830; phosphotransferase system sugar-specific eiib component 80010..80486 Streptococcus pneumoniae JJA 7680088 YP_002735208.1 CDS SPJ_0092 NC_012466.1 80514 81419 D identified by match to protein family HMM PF03609; PTS system, IIC component 80514..81419 Streptococcus pneumoniae JJA 7679045 YP_002735209.1 CDS SPJ_0093 NC_012466.1 81406 82221 D identified by match to protein family HMM PF03613; PTS system, IID component 81406..82221 Streptococcus pneumoniae JJA 7679033 YP_002735210.1 CDS SPJ_0094 NC_012466.1 82228 82632 D identified by match to protein family HMM PF03610; phosphotransferase system sugar-specific EII component 82228..82632 Streptococcus pneumoniae JJA 7678445 YP_002735211.1 CDS SPJ_0095 NC_012466.1 82885 84051 D identified by match to protein family HMM PF01380; putative tagatose-6-phosphate ketose/aldose isomerase 82885..84051 Streptococcus pneumoniae JJA 7680292 YP_002735212.1 CDS SPJ_0096 NC_012466.1 84167 85204 D identified by match to protein family HMM PF01263; aldose 1-epimerase 84167..85204 Streptococcus pneumoniae JJA 7679307 YP_002735213.1 CDS SPJ_0097 NC_012466.1 85411 86265 D identified by match to protein family HMM PF00903; glyoxalase family protein 85411..86265 Streptococcus pneumoniae JJA 7680504 YP_002735214.1 CDS SPJ_0098 NC_012466.1 86415 86672 D identified by match to protein family HMM PF02583; hypothetical protein 86415..86672 Streptococcus pneumoniae JJA 7679959 YP_002735215.1 CDS SPJ_0099 NC_012466.1 87103 87381 R identified by match to protein family HMM PF00581; hypothetical protein complement(87103..87381) Streptococcus pneumoniae JJA 7679272 YP_002735216.1 CDS SPJ_0100 NC_012466.1 87371 87490 R coenzyme A disulfide reductase complement(87371..87490) Streptococcus pneumoniae JJA 7679633 YP_002735217.1 CDS SPJ_0101 NC_012466.1 87603 88367 D identified by match to protein family HMM PF01048; phosphorylase, Pnp/Udp family 87603..88367 Streptococcus pneumoniae JJA 7680085 YP_002735218.1 CDS SPJ_0102 NC_012466.1 88607 88849 R identified by Glimmer3; putative; hypothetical protein complement(88607..88849) Streptococcus pneumoniae JJA 7678622 YP_002735219.1 CDS SPJ_0103 NC_012466.1 89067 90446 D identified by match to protein family HMM PF02386; Trk transporter membrane-spanning protein - K+ transport 89067..90446 Streptococcus pneumoniae JJA 7678522 YP_002735220.1 CDS SPJ_0104 NC_012466.1 90460 91125 D identified by match to protein family HMM PF02254; potassium uptake protein, Trk family 90460..91125 Streptococcus pneumoniae JJA 7679170 YP_002735221.1 CDS SPJ_0105 NC_012466.1 91260 91463 D identified by Glimmer3; putative; hypothetical protein 91260..91463 Streptococcus pneumoniae JJA 7680538 YP_002735222.1 CDS SPJ_0108 NC_012466.1 92657 95230 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein 92657..95230 Streptococcus pneumoniae JJA 7679760 YP_002735223.1 CDS SPJ_0109 NC_012466.1 95397 96095 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator SaeR 95397..96095 Streptococcus pneumoniae JJA 7678836 YP_002735224.1 CDS SPJ_0110 NC_012466.1 96092 97144 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 96092..97144 Streptococcus pneumoniae JJA 7680285 YP_002735225.1 CDS rpsD NC_012466.1 97339 97950 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 97339..97950 Streptococcus pneumoniae JJA 7679792 YP_002735226.1 CDS SPJ_0112 NC_012466.1 98136 98294 D transposase 98136..98294 Streptococcus pneumoniae JJA 7679456 YP_002735227.1 CDS SPJ_0113 NC_012466.1 98717 98977 D hypothetical protein 98717..98977 Streptococcus pneumoniae JJA 7678971 YP_002735228.1 CDS SPJ_0114 NC_012466.1 98931 99152 D hypothetical protein 98931..99152 Streptococcus pneumoniae JJA 7680424 YP_002735229.1 CDS SPJ_0115 NC_012466.1 99471 100400 D identified by match to protein family HMM PF00528; ABC transporter permease 99471..100400 Streptococcus pneumoniae JJA 7679980 YP_002735230.1 CDS SPJ_0116 NC_012466.1 100414 101337 D identified by match to protein family HMM PF00528; protein LplC 100414..101337 Streptococcus pneumoniae JJA 7679690 YP_002735231.1 CDS SPJ_0117 NC_012466.1 101595 103070 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 101595..103070 Streptococcus pneumoniae JJA 7679324 YP_002735232.1 CDS SPJ_0118 NC_012466.1 103342 104328 D identified by match to protein family HMM PF00581; hypothetical protein 103342..104328 Streptococcus pneumoniae JJA 7678387 YP_002735233.1 CDS SPJ_0119 NC_012466.1 104450 105310 D hypothetical protein 104450..105310 Streptococcus pneumoniae JJA 7679345 YP_002735234.1 CDS SPJ_0120 NC_012466.1 105382 106446 R hypothetical protein complement(105382..106446) Streptococcus pneumoniae JJA 7679577 YP_002735235.1 CDS SPJ_0121 NC_012466.1 106509 107420 R hypothetical protein complement(106509..107420) Streptococcus pneumoniae JJA 7680070 YP_002735236.1 CDS SPJ_0122 NC_012466.1 107413 108006 R hypothetical protein complement(107413..108006) Streptococcus pneumoniae JJA 7679068 YP_002735237.1 CDS SPJ_0123 NC_012466.1 107993 108319 R identified by match to protein family HMM PF03551; transcription regulator complement(107993..108319) Streptococcus pneumoniae JJA 7678715 YP_002735238.1 CDS SPJ_0124 NC_012466.1 108458 109624 R identified by match to protein family HMM PF07690; cyanate permease complement(108458..109624) Streptococcus pneumoniae JJA 7680058 YP_002735239.1 CDS SPJ_0125 NC_012466.1 109775 110839 D identified by match to protein family HMM PF00535; glycosyl transferase 109775..110839 Streptococcus pneumoniae JJA 7679715 YP_002735240.1 CDS SPJ_0126 NC_012466.1 110881 112731 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; CapD protein, required for the biosynthesis of type 1 capsular polysaccharide 110881..112731 Streptococcus pneumoniae JJA 7678818 YP_002735241.1 CDS SPJ_0127 NC_012466.1 113037 113669 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(113037..113669) Streptococcus pneumoniae JJA 7678480 YP_002735242.1 CDS sdaAA NC_012466.1 113691 114563 R identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent, alpha subunit complement(113691..114563) Streptococcus pneumoniae JJA 7679823 YP_002735243.1 CDS sdaAB NC_012466.1 114572 115243 R identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent, beta subunit complement(114572..115243) Streptococcus pneumoniae JJA 7680189 YP_002735244.1 CDS SPJ_0130 NC_012466.1 115485 116072 D identified by match to protein family HMM PF01476; LysM domain protein 115485..116072 Streptococcus pneumoniae JJA 7678462 YP_002735245.1 CDS SPJ_0131 NC_012466.1 116124 116444 R hypothetical protein complement(116124..116444) Streptococcus pneumoniae JJA 7678864 YP_002735246.1 CDS SPJ_0132 NC_012466.1 116928 117143 D identified by match to protein family HMM TIGR01653; bacteriocin, lactococcin 972 family 116928..117143 Streptococcus pneumoniae JJA 7679974 YP_002735247.1 CDS SPJ_0133 NC_012466.1 117285 119306 D identified by match to protein family HMM TIGR01654; amino acid ABC transporter permease 117285..119306 Streptococcus pneumoniae JJA 7680422 YP_002735248.1 CDS SPJ_0134 NC_012466.1 119303 119944 D identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB 119303..119944 Streptococcus pneumoniae JJA 7678705 YP_002735249.1 CDS SPJ_0135 NC_012466.1 120151 120957 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 120151..120957 Streptococcus pneumoniae JJA 7679210 YP_002735250.1 CDS argH NC_012466.1 122200 123591 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 122200..123591 Streptococcus pneumoniae JJA 7679485 YP_002735251.1 CDS SPJ_0139 NC_012466.1 123880 124743 R identified by match to protein family HMM PF01381; helix-turn-helix domain protein complement(123880..124743) Streptococcus pneumoniae JJA 7678526 YP_002735252.1 CDS SPJ_0140 NC_012466.1 125209 127428 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193; lactococcin-G-processing and transport ATP-binding protein LagD 125209..127428 Streptococcus pneumoniae JJA 7679114 YP_002735253.1 CDS SPJ_0141 NC_012466.1 127421 127888 D hypothetical protein 127421..127888 Streptococcus pneumoniae JJA 7680318 YP_002735254.1 CDS SPJ_0142 NC_012466.1 127885 129237 D hypothetical protein 127885..129237 Streptococcus pneumoniae JJA 7680310 YP_002735255.1 CDS SPJ_0143 NC_012466.1 129382 129699 D hypothetical protein 129382..129699 Streptococcus pneumoniae JJA 7678868 YP_002735256.1 CDS SPJ_0144 NC_012466.1 129708 130607 D hypothetical protein 129708..130607 Streptococcus pneumoniae JJA 7679390 YP_002735257.1 CDS SPJ_0145 NC_012466.1 130663 130995 D hypothetical protein 130663..130995 Streptococcus pneumoniae JJA 7679613 YP_002735258.1 CDS SPJ_0146 NC_012466.1 130992 131720 D hypothetical protein 130992..131720 Streptococcus pneumoniae JJA 7679564 YP_002735259.1 CDS SPJ_0147 NC_012466.1 132855 133358 D identified by Glimmer3; putative; hypothetical protein 132855..133358 Streptococcus pneumoniae JJA 7680066 YP_002735260.1 CDS SPJ_0150 NC_012466.1 136049 136174 D identified by Glimmer3; putative; hypothetical protein 136049..136174 Streptococcus pneumoniae JJA 7680266 YP_002735261.1 CDS mnmA NC_012466.1 136197 137318 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 136197..137318 Streptococcus pneumoniae JJA 7679036 YP_002735262.1 CDS SPJ_0152 NC_012466.1 137459 137914 D identified by match to protein family HMM PF00293; MutT/nudix family protein 137459..137914 Streptococcus pneumoniae JJA 7679500 YP_002735263.1 CDS gidA NC_012466.1 137924 139837 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 137924..139837 Streptococcus pneumoniae JJA 7680223 YP_002735264.1 CDS SPJ_0154 NC_012466.1 139969 140118 R chlorohydrolase complement(139969..140118) Streptococcus pneumoniae JJA 7678814 YP_002735265.1 CDS SPJ_0155 NC_012466.1 140190 141869 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase superfamily protein complement(140190..141869) Streptococcus pneumoniae JJA 7678962 YP_002735266.1 CDS SPJ_0156 NC_012466.1 141871 142104 R identified by match to protein family HMM PF07288; hypothetical protein complement(141871..142104) Streptococcus pneumoniae JJA 7679779 YP_002735267.1 CDS SPJ_0157 NC_012466.1 142922 143074 R identified by match to protein family HMM TIGR01847; bacteriocin-type signal sequence domain protein complement(142922..143074) Streptococcus pneumoniae JJA 7680465 YP_002735268.1 CDS SPJ_0158 NC_012466.1 143076 143261 R hypothetical protein complement(143076..143261) Streptococcus pneumoniae JJA 7680194 YP_002735269.1 CDS SPJ_0159 NC_012466.1 143439 144122 D identified by match to protein family HMM PF00814; glycoprotein endopeptidase 143439..144122 Streptococcus pneumoniae JJA 7679408 YP_002735270.1 CDS rimI NC_012466.1 144119 144556 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 144119..144556 Streptococcus pneumoniae JJA 7680132 YP_002735271.1 CDS SPJ_0161 NC_012466.1 144546 145556 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 144546..145556 Streptococcus pneumoniae JJA 7678429 YP_002735272.1 CDS SPJ_0162 NC_012466.1 145596 145982 R transposase complement(145596..145982) Streptococcus pneumoniae JJA 7679781 YP_002735273.1 CDS SPJ_0163 NC_012466.1 145973 146950 R identified by match to protein family HMM PF01610; transposase complement(145973..146950) Streptococcus pneumoniae JJA 7679416 YP_002735274.1 CDS SPJ_0166 NC_012466.1 149371 150324 D identified by match to protein family HMM PF00535; glycosyl transferase, family 2 149371..150324 Streptococcus pneumoniae JJA 7678581 YP_002735275.1 CDS SPJ_0167 NC_012466.1 150334 151950 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 150334..151950 Streptococcus pneumoniae JJA 7679153 YP_002735276.1 CDS SPJ_0168 NC_012466.1 152503 152727 D hypothetical protein 152503..152727 Streptococcus pneumoniae JJA 7678912 YP_002735277.1 CDS SPJ_0169 NC_012466.1 152739 153488 D identified by match to protein family HMM PF02585; GlcNAc-PI de-N-acetylase family 152739..153488 Streptococcus pneumoniae JJA 7678807 YP_002735278.1 CDS SPJ_0170 NC_012466.1 153501 154673 D identified by match to protein family HMM PF00984; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 153501..154673 Streptococcus pneumoniae JJA 7680375 YP_002735279.1 CDS SPJ_0171 NC_012466.1 155069 155932 D identified by match to protein family HMM TIGR01716; MutR 155069..155932 Streptococcus pneumoniae JJA 7679797 YP_002735280.1 CDS SPJ_0172 NC_012466.1 156218 156418 D identified by Glimmer3; putative; hypothetical protein 156218..156418 Streptococcus pneumoniae JJA 7679180 YP_002735281.1 CDS SPJ_0173 NC_012466.1 156485 157150 D identified by match to protein family HMM PF02517; caax amino protease family 156485..157150 Streptococcus pneumoniae JJA 7678533 YP_002735282.1 CDS SPJ_0174 NC_012466.1 157222 158448 D transporter, major facilitator family protein 157222..158448 Streptococcus pneumoniae JJA 7680108 YP_002735283.1 CDS SPJ_0175 NC_012466.1 158901 159557 D identified by match to protein family HMM PF03591; branched-chain amino acid permease 158901..159557 Streptococcus pneumoniae JJA 7679431 YP_002735284.1 CDS SPJ_0176 NC_012466.1 159547 159756 D identified by match to protein family HMM PF05437; transmembrane protein 159547..159756 Streptococcus pneumoniae JJA 7678825 YP_002735285.1 CDS SPJ_0177 NC_012466.1 159974 160804 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 159974..160804 Streptococcus pneumoniae JJA 7680321 YP_002735286.1 CDS SPJ_0178 NC_012466.1 160958 161812 D identified by match to protein family HMM PF03180; lipoprotein 160958..161812 Streptococcus pneumoniae JJA 7679746 YP_002735287.1 CDS SPJ_0179 NC_012466.1 161912 163285 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 161912..163285 Streptococcus pneumoniae JJA 7679579 YP_002735288.1 CDS SPJ_0180 NC_012466.1 163278 164339 D identified by match to protein family HMM PF00005; methionine import ATP-binding protein MetN 163278..164339 Streptococcus pneumoniae JJA 7679034 YP_002735289.1 CDS SPJ_0181 NC_012466.1 164341 165033 D identified by match to protein family HMM PF00528; ABC transporter permease 164341..165033 Streptococcus pneumoniae JJA 7678607 YP_002735290.1 CDS SPJ_0182 NC_012466.1 165062 165631 R identified by match to protein family HMM TIGR02185; membrane-bound protein complement(165062..165631) Streptococcus pneumoniae JJA 7680171 YP_002735291.1 CDS SPJ_0183 NC_012466.1 165766 166380 D identified by match to protein family HMM PF04854; hypothetical protein 165766..166380 Streptococcus pneumoniae JJA 7680390 YP_002735292.1 CDS SPJ_0184 NC_012466.1 166430 168028 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase, putative 166430..168028 Streptococcus pneumoniae JJA 7679772 YP_002735293.1 CDS SPJ_0185 NC_012466.1 168040 169326 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; response regulator 168040..169326 Streptococcus pneumoniae JJA 7679423 YP_002735294.1 CDS SPJ_0186 NC_012466.1 169378 169911 D hypothetical protein 169378..169911 Streptococcus pneumoniae JJA 7678844 YP_002735295.1 CDS SPJ_0187 NC_012466.1 169989 170459 D has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; flavoprotein NrdI 169989..170459 Streptococcus pneumoniae JJA 7680124 YP_002735296.1 CDS SPJ_0188 NC_012466.1 170752 172014 R mn2+ and fe2+ transporter of the nramp family complement(170752..172014) Streptococcus pneumoniae JJA 7679535 YP_002735297.1 CDS SPJ_0189 NC_012466.1 172324 172782 R hypothetical protein complement(172324..172782) Streptococcus pneumoniae JJA 7680083 YP_002735298.1 CDS SPJ_0190 NC_012466.1 172779 173219 R identified by match to protein family HMM PF04397; response regulator of the LytR/AlgR family complement(172779..173219) Streptococcus pneumoniae JJA 7679774 YP_002735299.1 CDS mutL NC_012466.1 173575 175524 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 173575..175524 Streptococcus pneumoniae JJA 7679169 YP_002735300.1 CDS ribH NC_012466.1 175849 176316 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(175849..176316) Streptococcus pneumoniae JJA 7679051 YP_002735301.1 CDS SPJ_0193 NC_012466.1 176317 177522 R identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein ribAB complement(176317..177522) Streptococcus pneumoniae JJA 7678498 YP_002735302.1 CDS ribE NC_012466.1 177542 178177 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(177542..178177) Streptococcus pneumoniae JJA 7680258 YP_002735303.1 CDS ribD NC_012466.1 178162 179262 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(178162..179262) Streptococcus pneumoniae JJA 7679648 YP_002735304.1 CDS ruvA NC_012466.1 179668 180261 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 179668..180261 Streptococcus pneumoniae JJA 7679279 YP_002735305.1 CDS SPJ_0197 NC_012466.1 180271 180834 D identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosylase 1 180271..180834 Streptococcus pneumoniae JJA 7678697 YP_002735306.1 CDS SPJ_0198 NC_012466.1 180831 181508 D identified by match to protein family HMM PF02517; caax amino protease family 180831..181508 Streptococcus pneumoniae JJA 7680548 YP_002735307.1 CDS SPJ_0199 NC_012466.1 181649 182680 R identified by match to protein family HMM PF02016; MccC family protein complement(181649..182680) Streptococcus pneumoniae JJA 7680131 YP_002735308.1 CDS SPJ_0200 NC_012466.1 182935 183618 R identified by match to protein family HMM PF06570; hypothetical protein complement(182935..183618) Streptococcus pneumoniae JJA 7679348 YP_002735309.1 CDS SPJ_0201 NC_012466.1 183630 184574 R identified by match to protein family HMM PF01544; magnesium and cobalt transporter complement(183630..184574) Streptococcus pneumoniae JJA 7679156 YP_002735310.1 CDS uvrA NC_012466.1 184706 187537 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 184706..187537 Streptococcus pneumoniae JJA 7679195 YP_002735311.1 CDS SPJ_0203 NC_012466.1 187530 188591 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Xaa-Pro dipeptidase 187530..188591 Streptococcus pneumoniae JJA 7679512 YP_002735312.1 CDS spxA NC_012466.1 188723 189121 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 188723..189121 Streptococcus pneumoniae JJA 7678679 YP_002735313.1 CDS SPJ_0205 NC_012466.1 189187 189756 D lipoprotein, putative 189187..189756 Streptococcus pneumoniae JJA 7678566 YP_002735314.1 CDS SPJ_0206 NC_012466.1 189843 190109 D identified by match to protein family HMM PF06135; hypothetical protein 189843..190109 Streptococcus pneumoniae JJA 7679945 YP_002735315.1 CDS SPJ_0207 NC_012466.1 190113 190532 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 190113..190532 Streptococcus pneumoniae JJA 7680535 YP_002735316.1 CDS SPJ_0208 NC_012466.1 190548 190853 D identified by match to protein family HMM PF06949; hypothetical protein 190548..190853 Streptococcus pneumoniae JJA 7678439 YP_002735317.1 CDS SPJ_0209 NC_012466.1 191111 192361 D identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate:folylpolyglutamate synthetase 191111..192361 Streptococcus pneumoniae JJA 7678559 YP_002735318.1 CDS SPJ_0210 NC_012466.1 192358 192900 D hypothetical protein 192358..192900 Streptococcus pneumoniae JJA 7680400 YP_002735319.1 CDS SPJ_0211 NC_012466.1 193046 194578 D identified by match to protein family HMM PF00614; cardiolipin synthase 193046..194578 Streptococcus pneumoniae JJA 7679794 YP_002735320.1 CDS SPJ_0212 NC_012466.1 194836 196374 D competence-induced protein Ccs4 194836..196374 Streptococcus pneumoniae JJA 7679369 YP_002735321.1 CDS nrdD NC_012466.1 196494 198701 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 196494..198701 Streptococcus pneumoniae JJA 7678797 YP_002735322.1 CDS SPJ_0214 NC_012466.1 198713 198853 D hypothetical protein 198713..198853 Streptococcus pneumoniae JJA 7679551 YP_002735323.1 CDS SPJ_0215 NC_012466.1 198897 199403 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 198897..199403 Streptococcus pneumoniae JJA 7678942 YP_002735324.1 CDS nrdG NC_012466.1 199396 199986 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 199396..199986 Streptococcus pneumoniae JJA 7678610 YP_002735325.1 CDS SPJ_0217 NC_012466.1 199994 200611 D identified by match to protein family HMM PF00485; phosphoribulokinase / Uridine kinase family 199994..200611 Streptococcus pneumoniae JJA 7680401 YP_002735326.1 CDS rpsJ NC_012466.1 200877 201185 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 200877..201185 Streptococcus pneumoniae JJA 7679803 YP_002735327.1 CDS rplC NC_012466.1 201402 202028 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 201402..202028 Streptococcus pneumoniae JJA 7679587 YP_002735328.1 CDS rplD NC_012466.1 202053 202676 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 202053..202676 Streptococcus pneumoniae JJA 7679202 YP_002735329.1 CDS rplW NC_012466.1 202676 202972 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 202676..202972 Streptococcus pneumoniae JJA 7679525 YP_002735330.1 CDS rplB NC_012466.1 202990 203823 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 202990..203823 Streptococcus pneumoniae JJA 7680387 YP_002735331.1 CDS rpsS NC_012466.1 203927 204208 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 203927..204208 Streptococcus pneumoniae JJA 7678706 YP_002735332.1 CDS rplV NC_012466.1 204220 204564 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 204220..204564 Streptococcus pneumoniae JJA 7679418 YP_002735333.1 CDS rpsC NC_012466.1 204577 205230 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 204577..205230 Streptococcus pneumoniae JJA 7679909 YP_002735334.1 CDS rplP NC_012466.1 205234 205647 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 205234..205647 Streptococcus pneumoniae JJA 7678460 YP_002735335.1 CDS rpmC NC_012466.1 205657 205863 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 205657..205863 Streptococcus pneumoniae JJA 7678936 YP_002735336.1 CDS rpsQ NC_012466.1 205888 206148 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 205888..206148 Streptococcus pneumoniae JJA 7678464 YP_002735337.1 CDS rplN NC_012466.1 206174 206542 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 206174..206542 Streptococcus pneumoniae JJA 7679144 YP_002735338.1 CDS rplX NC_012466.1 206620 206925 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 206620..206925 Streptococcus pneumoniae JJA 7679641 YP_002735339.1 CDS rplE NC_012466.1 206949 207491 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 206949..207491 Streptococcus pneumoniae JJA 7680158 YP_002735340.1 CDS rpsN NC_012466.1 207509 207778 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 207509..207778 Streptococcus pneumoniae JJA 7679046 YP_002735341.1 CDS rpsH NC_012466.1 208063 208461 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 208063..208461 Streptococcus pneumoniae JJA 7679670 YP_002735342.1 CDS rplF NC_012466.1 208653 209189 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 208653..209189 Streptococcus pneumoniae JJA 7680283 YP_002735343.1 CDS rplR NC_012466.1 209273 209629 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 209273..209629 Streptococcus pneumoniae JJA 7679240 YP_002735344.1 CDS rpsE NC_012466.1 209647 210141 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 209647..210141 Streptococcus pneumoniae JJA 7678674 YP_002735345.1 CDS rpmD NC_012466.1 210155 210337 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 210155..210337 Streptococcus pneumoniae JJA 7679336 YP_002735346.1 CDS rplO NC_012466.1 210482 210922 D late assembly protein; 50S ribosomal protein L15 210482..210922 Streptococcus pneumoniae JJA 7679965 YP_002735347.1 CDS secY NC_012466.1 210935 212245 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 210935..212245 Streptococcus pneumoniae JJA 7680531 YP_002735348.1 CDS adk NC_012466.1 212396 213034 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 212396..213034 Streptococcus pneumoniae JJA 7678935 YP_002735349.1 CDS infA NC_012466.1 213151 213369 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 213151..213369 Streptococcus pneumoniae JJA 7679470 YP_002735350.1 CDS rpmJ NC_012466.1 213394 213510 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 213394..213510 Streptococcus pneumoniae JJA 7680263 YP_002735351.1 CDS rpsM NC_012466.1 213528 213893 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 213528..213893 Streptococcus pneumoniae JJA 7678960 YP_002735352.1 CDS rpsK NC_012466.1 213911 214294 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 213911..214294 Streptococcus pneumoniae JJA 7679567 YP_002735353.1 CDS rpoA NC_012466.1 214337 215272 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 214337..215272 Streptococcus pneumoniae JJA 7680265 YP_002735354.1 CDS rplQ NC_012466.1 215284 215670 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 215284..215670 Streptococcus pneumoniae JJA 7679640 YP_002735355.1 CDS SPJ_0247 NC_012466.1 215935 216201 D ACT domain-containing protein; hypothetical protein 215935..216201 Streptococcus pneumoniae JJA 7679318 YP_002735356.1 CDS SPJ_0248 NC_012466.1 216211 217548 D identified by match to protein family HMM PF05167; hypothetical protein 216211..217548 Streptococcus pneumoniae JJA 7678718 YP_002735357.1 CDS SPJ_0249 NC_012466.1 217735 218484 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 217735..218484 Streptococcus pneumoniae JJA 7680539 YP_002735358.1 CDS SPJ_0256 NC_012466.1 222654 222851 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(222654..222851) Streptococcus pneumoniae JJA 7680230 YP_002735359.1 CDS SPJ_0257 NC_012466.1 222926 223702 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; pyruvate formate-lyase 3 complement(222926..223702) Streptococcus pneumoniae JJA 7678749 YP_002735360.1 CDS SPJ_0258 NC_012466.1 223824 224570 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; putative HTH-type transcriptional regulator YciT 223824..224570 Streptococcus pneumoniae JJA 7680186 YP_002735361.1 CDS SPJ_0259 NC_012466.1 224583 225563 D identified by match to protein family HMM PF04198; transcriptional regulator 224583..225563 Streptococcus pneumoniae JJA 7679992 YP_002735362.1 CDS SPJ_0260 NC_012466.1 225758 226078 D identified by match to protein family HMM PF02255; phosphotransferase system sugar-specific eiia component 225758..226078 Streptococcus pneumoniae JJA 7679565 YP_002735363.1 CDS SPJ_0261 NC_012466.1 226124 226432 D identified by match to protein family HMM PF02302; phosphotransferase system sugar-specific eiib component 226124..226432 Streptococcus pneumoniae JJA 7679533 YP_002735364.1 CDS SPJ_0262 NC_012466.1 226449 227747 D identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; lichenan permease iic component (pts system lichenan-specific eiiccomponent) (eiic-lic) 226449..227747 Streptococcus pneumoniae JJA 7680053 YP_002735365.1 CDS SPJ_0263 NC_012466.1 227898 230336 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; pyruvate formate-lyase 227898..230336 Streptococcus pneumoniae JJA 7680389 YP_002735366.1 CDS SPJ_0264 NC_012466.1 230355 231023 D similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 230355..231023 Streptococcus pneumoniae JJA 7679207 YP_002735367.1 CDS gldA NC_012466.1 231041 232129 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 231041..232129 Streptococcus pneumoniae JJA 7679789 YP_002735368.1 CDS leuS NC_012466.1 232584 235085 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 232584..235085 Streptococcus pneumoniae JJA 7680372 YP_002735369.1 CDS SPJ_0267 NC_012466.1 235279 235974 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 235279..235974 Streptococcus pneumoniae JJA 7678831 YP_002735370.1 CDS SPJ_0268 NC_012466.1 235986 236402 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 235986..236402 Streptococcus pneumoniae JJA 7679025 YP_002735371.1 CDS ruvB NC_012466.1 237443 238441 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 237443..238441 Streptococcus pneumoniae JJA 7679148 YP_002735372.1 CDS SPJ_0270 NC_012466.1 238422 238994 D identified by match to protein family HMM PF06042; hypothetical protein 238422..238994 Streptococcus pneumoniae JJA 7680080 YP_002735373.1 CDS uppS NC_012466.1 239225 239983 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 239225..239983 Streptococcus pneumoniae JJA 7679910 YP_002735374.1 CDS cdsA NC_012466.1 239992 240795 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 239992..240795 Streptococcus pneumoniae JJA 7679295 YP_002735375.1 CDS rseP NC_012466.1 240817 242076 D identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP 240817..242076 Streptococcus pneumoniae JJA 7679326 YP_002735376.1 CDS proS NC_012466.1 242089 243942 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 242089..243942 Streptococcus pneumoniae JJA 7678699 YP_002735377.1 CDS SPJ_0275 NC_012466.1 244042 245421 D identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 244042..245421 Streptococcus pneumoniae JJA 7679762 YP_002735378.1 CDS glmS NC_012466.1 245613 247421 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 245613..247421 Streptococcus pneumoniae JJA 7679067 YP_002735379.1 CDS SPJ_0277 NC_012466.1 247540 248589 D identified by match to protein family HMM PF00296; oxidoreductase 247540..248589 Streptococcus pneumoniae JJA 7680112 YP_002735380.1 CDS SPJ_0278 NC_012466.1 248689 252486 R identified by match to protein family HMM PF00128; match to protein family HMM PF00746; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; match to protein family HMM TIGR02102; pullulanase, extracellular complement(248689..252486) Streptococcus pneumoniae JJA 7679582 YP_002735381.1 CDS rpsL NC_012466.1 252902 253315 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 252902..253315 Streptococcus pneumoniae JJA 7679105 YP_002735382.1 CDS rpsG NC_012466.1 253335 253805 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 253335..253805 Streptococcus pneumoniae JJA 7679149 YP_002735383.1 CDS fusA NC_012466.1 254229 256310 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 254229..256310 Streptococcus pneumoniae JJA 7680294 YP_002735384.1 CDS polC NC_012466.1 256414 260805 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 256414..260805 Streptococcus pneumoniae JJA 7678740 YP_002735385.1 CDS SPJ_0283 NC_012466.1 260907 261170 D identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384; addiction module antitoxin, RelB/DinJ family 260907..261170 Streptococcus pneumoniae JJA 7679396 YP_002735386.1 CDS SPJ_0284 NC_012466.1 261163 261441 D identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; DNA damage inducible protein 261163..261441 Streptococcus pneumoniae JJA 7679990 YP_002735387.1 CDS SPJ_0285 NC_012466.1 261462 261614 D hypothetical protein 261462..261614 Streptococcus pneumoniae JJA 7678866 YP_002735388.1 CDS SPJ_0286 NC_012466.1 261636 262877 D identified by match to protein family HMM PF02073; aminopeptidase PepS 261636..262877 Streptococcus pneumoniae JJA 7679413 YP_002735389.1 CDS SPJ_0287 NC_012466.1 262887 263117 D identified by match to protein family HMM PF04226; integral membrane protein 262887..263117 Streptococcus pneumoniae JJA 7679095 YP_002735390.1 CDS SPJ_0288 NC_012466.1 263430 264152 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 263430..264152 Streptococcus pneumoniae JJA 7679513 YP_002735391.1 CDS SPJ_0289 NC_012466.1 264369 265703 D identified by match to protein family HMM PF03051; aminopeptidase C (Bleomycin hydrolase) 264369..265703 Streptococcus pneumoniae JJA 7678589 YP_002735392.1 CDS SPJ_0290 NC_012466.1 265759 266670 R identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828; PTS system, mannose/fructose/sorbose family, IID component complement(265759..266670) Streptococcus pneumoniae JJA 7679397 YP_002735393.1 CDS SPJ_0291 NC_012466.1 266694 267497 R identified by match to protein family HMM PF03609; PTS system sorbose-specific IIc component complement(266694..267497) Streptococcus pneumoniae JJA 7679071 YP_002735394.1 CDS SPJ_0292 NC_012466.1 267525 268514 R identified by match to protein family HMM PF03610; match to protein family HMM PF03830; mannose-specific phosphotransferase system component iiab complement(267525..268514) Streptococcus pneumoniae JJA 7678625 YP_002735395.1 CDS SPJ_0293 NC_012466.1 268747 269766 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase complement(268747..269766) Streptococcus pneumoniae JJA 7679592 YP_002735396.1 CDS SPJ_0294 NC_012466.1 269875 270021 R identified by Glimmer3; putative; hypothetical protein complement(269875..270021) Streptococcus pneumoniae JJA 7679084 YP_002735397.1 CDS SPJ_0295 NC_012466.1 270118 270930 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(270118..270930) Streptococcus pneumoniae JJA 7678633 YP_002735398.1 CDS SPJ_0296 NC_012466.1 271120 272538 D identified by match to protein family HMM PF00860; xanthine/uracil permease family protein 271120..272538 Streptococcus pneumoniae JJA 7680222 YP_002735399.1 CDS SPJ_0297 NC_012466.1 272591 273298 D identified by match to protein family HMM PF02517; caax amino protease family protein 272591..273298 Streptococcus pneumoniae JJA 7679259 YP_002735400.1 CDS folP NC_012466.1 273498 274475 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 273498..274475 Streptococcus pneumoniae JJA 7678755 YP_002735401.1 CDS SPJ_0299 NC_012466.1 274477 275799 D identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; dihydrofolate synthetase 274477..275799 Streptococcus pneumoniae JJA 7680459 YP_002735402.1 CDS folE NC_012466.1 275780 276334 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 275780..276334 Streptococcus pneumoniae JJA 7679634 YP_002735403.1 CDS SPJ_0301 NC_012466.1 276377 277189 D identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498; bifunctional folate synthesis protein 276377..277189 Streptococcus pneumoniae JJA 7679026 YP_002735404.1 CDS SPJ_0302 NC_012466.1 277234 277551 R hypothetical protein complement(277234..277551) Streptococcus pneumoniae JJA 7678415 YP_002735405.1 CDS SPJ_0303 NC_012466.1 277991 278944 D identified by match to protein family HMM PF00665; transposase 277991..278944 Streptococcus pneumoniae JJA 7680345 YP_002735406.1 CDS rplM NC_012466.1 279153 279599 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 279153..279599 Streptococcus pneumoniae JJA 7679625 YP_002735407.1 CDS rpsI NC_012466.1 279618 280010 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 279618..280010 Streptococcus pneumoniae JJA 7679403 YP_002735408.1 CDS SPJ_0306 NC_012466.1 280272 280694 R identified by match to protein family HMM PF00589; integrase/recombinase, phage integrase family complement(280272..280694) Streptococcus pneumoniae JJA 7678676 YP_002735409.1 CDS SPJ_0307 NC_012466.1 280841 281017 D hypothetical protein 280841..281017 Streptococcus pneumoniae JJA 7679536 YP_002735410.1 CDS SPJ_0308 NC_012466.1 281419 283632 D identified by match to protein family HMM PF01055; glycosyl hydrolase, family 31 281419..283632 Streptococcus pneumoniae JJA 7679937 YP_002735411.1 CDS SPJ_0309 NC_012466.1 283854 284330 R identified by match to protein family HMM PF00255; peroxiredoxin Hyr1 (hydrogen peroxide resistanceprotein 1) (oxidant receptor peroxidase 1) (glutathione peroxidase 3)(phospholipid hydroperoxide glutathione peroxidase 3) (phgpx3) complement(283854..284330) Streptococcus pneumoniae JJA 7678560 YP_002735412.1 CDS SPJ_0310 NC_012466.1 284553 287756 D identified by match to protein family HMM PF00746; match to protein family HMM PF02018; match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; match to protein family HMM TIGR01167; hyaluronate lyase 284553..287756 Streptococcus pneumoniae JJA 7680339 YP_002735413.1 CDS SPJ_0311 NC_012466.1 288171 288524 D transposase 288171..288524 Streptococcus pneumoniae JJA 7679253 YP_002735414.1 CDS SPJ_0312 NC_012466.1 288900 289529 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(288900..289529) Streptococcus pneumoniae JJA 7679699 YP_002735415.1 CDS SPJ_0313 NC_012466.1 289539 290540 R identified by match to protein family HMM PF00294; 2-keto-3-deoxygluconate kinase complement(289539..290540) Streptococcus pneumoniae JJA 7680215 YP_002735416.1 CDS SPJ_0314 NC_012466.1 290571 291212 R identified by match to protein family HMM PF02502; hypothetical protein complement(290571..291212) Streptococcus pneumoniae JJA 7678496 YP_002735417.1 CDS SPJ_0315 NC_012466.1 291231 292046 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase complement(291231..292046) Streptococcus pneumoniae JJA 7679555 YP_002735418.1 CDS SPJ_0316 NC_012466.1 292317 292751 D identified by match to protein family HMM PF03610; phosphotransferase system sugar-specific EII component 292317..292751 Streptococcus pneumoniae JJA 7680003 YP_002735419.1 CDS SPJ_0317 NC_012466.1 292763 293953 D identified by match to protein family HMM PF07470; unsaturated glucuronyl hydrolase (UGL) (Glycuronidase)(Unsaturated uronic acid hydrolase) (Glycosaminoglycan hydrolase) 292763..293953 Streptococcus pneumoniae JJA 7680454 YP_002735420.1 CDS SPJ_0318 NC_012466.1 293964 294455 D identified by match to protein family HMM PF03830; N-acetylgalactosamine-specific phosphotransferase enzyme iib component2 (pts system n-acetylgalactosamine-specific eiibcomponent 2) (eiib-aga') 293964..294455 Streptococcus pneumoniae JJA 7678741 YP_002735421.1 CDS SPJ_0319 NC_012466.1 294470 295249 D identified by match to protein family HMM PF03609; phosphotransferase system sugar-specific EII component 294470..295249 Streptococcus pneumoniae JJA 7679862 YP_002735422.1 CDS SPJ_0320 NC_012466.1 295236 296054 D identified by match to protein family HMM PF03613; PTS system, IID component 295236..296054 Streptococcus pneumoniae JJA 7679995 YP_002735423.1 CDS SPJ_0321 NC_012466.1 296081 296347 D preprotein translocase, YajC subunit 296081..296347 Streptococcus pneumoniae JJA 7679986 YP_002735424.1 CDS SPJ_0322 NC_012466.1 296369 298270 D identified by match to protein family HMM PF07940; oligohyaluronate lyase 296369..298270 Streptococcus pneumoniae JJA 7680440 YP_002735425.1 CDS SPJ_0323 NC_012466.1 298330 299331 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sugar binding transcriptional regulator RegR 298330..299331 Streptococcus pneumoniae JJA 7678424 YP_002735426.1 CDS SPJ_0324 NC_012466.1 299441 299776 R identified by Glimmer3; putative; hypothetical protein complement(299441..299776) Streptococcus pneumoniae JJA 7679199 YP_002735427.1 CDS SPJ_0325 NC_012466.1 299787 300029 R identified by Glimmer3; putative; hypothetical protein complement(299787..300029) Streptococcus pneumoniae JJA 7680231 YP_002735428.1 CDS SPJ_0326 NC_012466.1 300045 300239 R identified by match to protein family HMM PF01381; hypothetical protein complement(300045..300239) Streptococcus pneumoniae JJA 7679332 YP_002735429.1 CDS mraW NC_012466.1 300405 301355 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 300405..301355 Streptococcus pneumoniae JJA 7679972 YP_002735430.1 CDS ftsL NC_012466.1 301367 301684 D identified by match to protein family HMM TIGR02209; cell division protein FtsL 301367..301684 Streptococcus pneumoniae JJA 7680455 YP_002735431.1 CDS SPJ_0329 NC_012466.1 301688 303940 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin binding protein 2x 301688..303940 Streptococcus pneumoniae JJA 7680445 YP_002735432.1 CDS mraY NC_012466.1 303942 304922 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 303942..304922 Streptococcus pneumoniae JJA 7680307 YP_002735433.1 CDS SPJ_0331 NC_012466.1 305486 307591 D identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent Clp protease ATP-binding subunit ClpL 305486..307591 Streptococcus pneumoniae JJA 7680135 YP_002735434.1 CDS luxS NC_012466.1 307887 308369 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(307887..308369) Streptococcus pneumoniae JJA 7678909 YP_002735435.1 CDS SPJ_0333 NC_012466.1 308464 309948 R identified by match to protein family HMM PF08903; hypothetical protein complement(308464..309948) Streptococcus pneumoniae JJA 7679175 YP_002735436.1 CDS SPJ_0334 NC_012466.1 310101 311708 D identified by match to protein family HMM PF00128; trehalose-6-phosphate hydrolase (Alpha,alpha-phosphotrehalase) 310101..311708 Streptococcus pneumoniae JJA 7679684 YP_002735437.1 CDS SPJ_0335 NC_012466.1 312774 314219 D identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350; Cps23fA 312774..314219 Streptococcus pneumoniae JJA 7680291 YP_002735438.1 CDS SPJ_0336 NC_012466.1 314221 314952 D identified by match to protein family HMM PF02811; tyrosine-protein phosphatase CpsB 314221..314952 Streptococcus pneumoniae JJA 7679252 YP_002735439.1 CDS SPJ_0337 NC_012466.1 314961 315653 D identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006; capsular polysaccharide biosynthesis protein Wzd 314961..315653 Streptococcus pneumoniae JJA 7679905 YP_002735440.1 CDS SPJ_0338 NC_012466.1 315663 316346 D identified by match to protein family HMM TIGR01007; tyrosine-protein kinase CpsD 315663..316346 Streptococcus pneumoniae JJA 7680509 YP_002735441.1 CDS SPJ_0339 NC_012466.1 316362 317729 D identified by match to protein family HMM PF02397; galactosyl transferase CpsE 316362..317729 Streptococcus pneumoniae JJA 7679913 YP_002735442.1 CDS SPJ_0340 NC_012466.1 317733 318182 D identified by match to protein family HMM PF08660; exopolysaccharide biosynthesis protein, glycosyltransferase 317733..318182 Streptococcus pneumoniae JJA 7679236 YP_002735443.1 CDS SPJ_0341 NC_012466.1 318182 318685 D identified by match to protein family HMM PF04101; ss-1,4-galactosyltransferase 318182..318685 Streptococcus pneumoniae JJA 7679829 YP_002735444.1 CDS SPJ_0342 NC_012466.1 318675 319847 D oligosaccharide repeat unit polymerase Wzy 318675..319847 Streptococcus pneumoniae JJA 7680342 YP_002735445.1 CDS SPJ_0343 NC_012466.1 319844 320863 D identified by match to protein family HMM PF00535; ss-1,3-N-acetylglucosaminyltransferase 319844..320863 Streptococcus pneumoniae JJA 7678641 YP_002735446.1 CDS SPJ_0344 NC_012466.1 320878 321834 D identified by match to protein family HMM PF00535; ss-1,4-galactosyltransferase 320878..321834 Streptococcus pneumoniae JJA 7679384 YP_002735447.1 CDS SPJ_0345 NC_012466.1 321922 322770 D identified by match to protein family HMM PF05704; capsular polysaccharide synthesis protein 321922..322770 Streptococcus pneumoniae JJA 7679873 YP_002735448.1 CDS SPJ_0346 NC_012466.1 322763 324226 D identified by match to protein family HMM PF01943; match to protein family HMM PF03023; flippase Wzx 322763..324226 Streptococcus pneumoniae JJA 7678469 YP_002735449.1 CDS SPJ_0350 NC_012466.1 325235 331246 D identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; collagen-binding protein A 325235..331246 Streptococcus pneumoniae JJA 7679281 YP_002735450.1 CDS SPJ_0349 NC_012466.1 331200 331331 R identified by Glimmer3; putative; hypothetical protein complement(331200..331331) Streptococcus pneumoniae JJA 7680544 YP_002735451.1 CDS SPJ_0351 NC_012466.1 331401 332162 R identified by match to protein family HMM PF01610; transposase complement(331401..332162) Streptococcus pneumoniae JJA 7678662 YP_002735452.1 CDS SPJ_0352 NC_012466.1 332159 332677 R transposase complement(332159..332677) Streptococcus pneumoniae JJA 7680060 YP_002735453.1 CDS SPJ_0353 NC_012466.1 332916 334898 D identified by match to protein family HMM PF00496; oligopeptide binding protein 332916..334898 Streptococcus pneumoniae JJA 7679561 YP_002735454.1 CDS SPJ_0354 NC_012466.1 335199 340502 D identified by match to protein family HMM PF00754; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; endo-alpha-N-acetylgalactosaminidase 335199..340502 Streptococcus pneumoniae JJA 7680246 YP_002735455.1 CDS SPJ_0355 NC_012466.1 340669 342828 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A complement(340669..342828) Streptococcus pneumoniae JJA 7679589 YP_002735456.1 CDS recU NC_012466.1 342825 343421 R functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease complement(342825..343421) Streptococcus pneumoniae JJA 7679283 YP_002735457.1 CDS SPJ_0357 NC_012466.1 343487 344014 D identified by match to protein family HMM PF06908; hypothetical protein 343487..344014 Streptococcus pneumoniae JJA 7678651 YP_002735458.1 CDS SPJ_0358 NC_012466.1 344084 344413 D identified by match to protein family HMM PF05103; cell division initiation protein 344084..344413 Streptococcus pneumoniae JJA 7680498 YP_002735459.1 CDS SPJ_0359 NC_012466.1 344899 346056 D identified by match to protein family HMM PF01170; methyltransferase 344899..346056 Streptococcus pneumoniae JJA 7679742 YP_002735460.1 CDS SPJ_0360 NC_012466.1 346069 347463 D hypothetical protein 346069..347463 Streptococcus pneumoniae JJA 7680423 YP_002735461.1 CDS gnd NC_012466.1 347539 348963 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 347539..348963 Streptococcus pneumoniae JJA 7679780 YP_002735462.1 CDS SPJ_0362 NC_012466.1 348975 349664 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 348975..349664 Streptococcus pneumoniae JJA 7679432 YP_002735463.1 CDS SPJ_0363 NC_012466.1 349762 350727 D identified by match to protein family HMM PF01473; choline-binding protein F 349762..350727 Streptococcus pneumoniae JJA 7678812 YP_002735464.1 CDS SPJ_0364 NC_012466.1 350746 351744 D identified by match to protein family HMM PF01473; choline binding protein J 350746..351744 Streptococcus pneumoniae JJA 7679461 YP_002735465.1 CDS SPJ_0365 NC_012466.1 351862 353094 R identified by match to protein family HMM PF07690; transporter, major facilitator family protein complement(351862..353094) Streptococcus pneumoniae JJA 7678842 YP_002735466.1 CDS SPJ_0366 NC_012466.1 353137 353961 R identified by match to protein family HMM PF05147; hypothetical protein complement(353137..353961) Streptococcus pneumoniae JJA 7680161 YP_002735467.1 CDS SPJ_0367 NC_012466.1 354830 354952 D identified by match to protein family HMM PF01473; choline-binding protein F 354830..354952 Streptococcus pneumoniae JJA 7679702 YP_002735468.1 CDS mvk NC_012466.1 355074 355952 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549; mevalonate kinase 355074..355952 Streptococcus pneumoniae JJA 7679190 YP_002735469.1 CDS mvaD NC_012466.1 355934 356887 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240; diphosphomevalonate decarboxylase 355934..356887 Streptococcus pneumoniae JJA 7678701 YP_002735470.1 CDS SPJ_0370 NC_012466.1 356874 357881 D identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220; phosphomevalonate kinase 356874..357881 Streptococcus pneumoniae JJA 7680525 YP_002735471.1 CDS fni NC_012466.1 357865 358875 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 357865..358875 Streptococcus pneumoniae JJA 7678987 YP_002735472.1 CDS SPJ_0372 NC_012466.1 358952 359650 D hypothetical protein 358952..359650 Streptococcus pneumoniae JJA 7679313 YP_002735473.1 CDS SPJ_0373 NC_012466.1 359647 360642 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase 359647..360642 Streptococcus pneumoniae JJA 7679938 YP_002735474.1 CDS SPJ_0374 NC_012466.1 360656 361288 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 360656..361288 Streptococcus pneumoniae JJA 7678632 YP_002735475.1 CDS SPJ_0375 NC_012466.1 361502 361756 D DNA alkylation repair enzyme 361502..361756 Streptococcus pneumoniae JJA 7679245 YP_002735476.1 CDS SPJ_0376 NC_012466.1 361871 362047 D DNA alkylation repair enzyme, truncation 361871..362047 Streptococcus pneumoniae JJA 7679607 YP_002735477.1 CDS SPJ_0377 NC_012466.1 362197 362436 D hypothetical protein 362197..362436 Streptococcus pneumoniae JJA 7680176 YP_002735478.1 CDS SPJ_0378 NC_012466.1 362517 363338 D identified by match to protein family HMM PF00089; match to protein family HMM PF01473; choline binding protein G 362517..363338 Streptococcus pneumoniae JJA 7678899 YP_002735479.1 CDS SPJ_0379 NC_012466.1 363357 364379 D identified by match to protein family HMM PF01473; choline binding protein F 363357..364379 Streptococcus pneumoniae JJA 7679209 YP_002735480.1 CDS SPJ_0380 NC_012466.1 364507 364995 R identified by match to protein family HMM PF00665; integrase core domain, putative complement(364507..364995) Streptococcus pneumoniae JJA 7679773 YP_002735481.1 CDS SPJ_0381 NC_012466.1 365338 365499 R hypothetical protein complement(365338..365499) Streptococcus pneumoniae JJA 7679696 YP_002735482.1 CDS SPJ_0382 NC_012466.1 365635 365847 R transposase complement(365635..365847) Streptococcus pneumoniae JJA 7678834 YP_002735483.1 CDS SPJ_0383 NC_012466.1 366056 367825 D identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; pts system mannitol-specific eiicb component (eiicb-mtl) (eii-mtl) 366056..367825 Streptococcus pneumoniae JJA 7679299 YP_002735484.1 CDS SPJ_0384 NC_012466.1 367849 369804 D identified by match to protein family HMM PF08279; putative transcriptional regulator MtlR 367849..369804 Streptococcus pneumoniae JJA 7679531 YP_002735485.1 CDS SPJ_0385 NC_012466.1 369806 370243 D identified by match to protein family HMM PF00359; mannitol-specific phosphotransferase enzyme iia component (pts system mannitol-specific eiia component) (eiia-mtl) (eiii-mtl) 369806..370243 Streptococcus pneumoniae JJA 7680547 YP_002735486.1 CDS SPJ_0386 NC_012466.1 370305 371441 D identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 370305..371441 Streptococcus pneumoniae JJA 7678393 YP_002735487.1 CDS SPJ_0387 NC_012466.1 371830 371934 D identified by Glimmer3; putative; hypothetical protein 371830..371934 Streptococcus pneumoniae JJA 7679058 YP_002735488.1 CDS tig NC_012466.1 372247 373530 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 372247..373530 Streptococcus pneumoniae JJA 7679756 YP_002735489.1 CDS SPJ_0389 NC_012466.1 373578 375944 R identified by match to protein family HMM TIGR01448; helicase, RecD/TraA family complement(373578..375944) Streptococcus pneumoniae JJA 7679128 YP_002735490.1 CDS lepB NC_012466.1 376178 376792 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(376178..376792) Streptococcus pneumoniae JJA 7680062 YP_002735491.1 CDS rnhC NC_012466.1 376796 377677 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(376796..377677) Streptococcus pneumoniae JJA 7680104 YP_002735492.1 CDS SPJ_0392 NC_012466.1 377764 378066 D hypothetical protein 377764..378066 Streptococcus pneumoniae JJA 7678659 YP_002735493.1 CDS cvpA NC_012466.1 378063 378611 D identified by match to protein family HMM PF02674; CvpA family protein 378063..378611 Streptococcus pneumoniae JJA 7679132 YP_002735494.1 CDS SPJ_0394 NC_012466.1 378715 381051 D identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; MutS2 family protein 378715..381051 Streptococcus pneumoniae JJA 7679902 YP_002735495.1 CDS SPJ_0395 NC_012466.1 381394 382716 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; D-alanine glycine permease 381394..382716 Streptococcus pneumoniae JJA 7679886 YP_002735496.1 CDS SPJ_0396 NC_012466.1 382934 383482 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; macrophage infectivity potentiator protein 382934..383482 Streptococcus pneumoniae JJA 7680349 YP_002735497.1 CDS SPJ_0397 NC_012466.1 383592 384491 D identified by match to protein family HMM PF03595; exfoliative toxin A 383592..384491 Streptococcus pneumoniae JJA 7679061 YP_002735498.1 CDS serS NC_012466.1 384516 385790 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(384516..385790) Streptococcus pneumoniae JJA 7679381 YP_002735499.1 CDS SPJ_0399 NC_012466.1 386004 386375 R identified by match to protein family HMM PF06115; ManO complement(386004..386375) Streptococcus pneumoniae JJA 7679526 YP_002735500.1 CDS SPJ_0400 NC_012466.1 386378 387742 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(386378..387742) Streptococcus pneumoniae JJA 7678799 YP_002735501.1 CDS SPJ_0401 NC_012466.1 388111 388896 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 388111..388896 Streptococcus pneumoniae JJA 7679947 YP_002735502.1 CDS SPJ_0402 NC_012466.1 388990 389424 D identified by match to protein family HMM PF01047; match to protein family HMM PF03965; transcriptional regulator 388990..389424 Streptococcus pneumoniae JJA 7680323 YP_002735503.1 CDS SPJ_0403 NC_012466.1 389424 390398 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 389424..390398 Streptococcus pneumoniae JJA 7678731 YP_002735504.1 CDS acpP NC_012466.1 390458 390682 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 390458..390682 Streptococcus pneumoniae JJA 7678524 YP_002735505.1 CDS SPJ_0405 NC_012466.1 390801 391775 D identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; enoyl-ACP reductase II 390801..391775 Streptococcus pneumoniae JJA 7678568 YP_002735506.1 CDS fabD NC_012466.1 391768 392688 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 391768..392688 Streptococcus pneumoniae JJA 7679878 YP_002735507.1 CDS fabG NC_012466.1 392722 393453 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 392722..393453 Streptococcus pneumoniae JJA 7680334 YP_002735508.1 CDS fabF NC_012466.1 393475 394710 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 393475..394710 Streptococcus pneumoniae JJA 7678896 YP_002735509.1 CDS accB NC_012466.1 394713 395198 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 394713..395198 Streptococcus pneumoniae JJA 7678900 YP_002735510.1 CDS fabZ NC_012466.1 395195 395617 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 395195..395617 Streptococcus pneumoniae JJA 7679982 YP_002735511.1 CDS accC NC_012466.1 395629 396996 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 395629..396996 Streptococcus pneumoniae JJA 7678558 YP_002735512.1 CDS accD NC_012466.1 397033 397899 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 397033..397899 Streptococcus pneumoniae JJA 7680133 YP_002735513.1 CDS accA NC_012466.1 397896 398663 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus; acetyl-CoA carboxylase subunit alpha 397896..398663 Streptococcus pneumoniae JJA 7679788 YP_002735514.1 CDS SPJ_0414 NC_012466.1 398822 399007 D hypothetical protein 398822..399007 Streptococcus pneumoniae JJA 7680405 YP_002735515.1 CDS SPJ_0415 NC_012466.1 399348 399476 D identified by Glimmer3; putative; hypothetical protein 399348..399476 Streptococcus pneumoniae JJA 7678537 YP_002735516.1 CDS SPJ_0416 NC_012466.1 399627 399764 R identified by Glimmer3; putative; hypothetical protein complement(399627..399764) Streptococcus pneumoniae JJA 7678690 YP_002735517.1 CDS nusB NC_012466.1 399774 400196 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(399774..400196) Streptococcus pneumoniae JJA 7678820 YP_002735518.1 CDS SPJ_0418 NC_012466.1 400189 400578 R identified by match to protein family HMM PF03780; general stress protein, Gls24 family complement(400189..400578) Streptococcus pneumoniae JJA 7680428 YP_002735519.1 CDS efp NC_012466.1 400600 401160 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(400600..401160) Streptococcus pneumoniae JJA 7678966 YP_002735520.1 CDS gatB NC_012466.1 401289 402731 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(401289..402731) Streptococcus pneumoniae JJA 7679692 YP_002735521.1 CDS gatA NC_012466.1 402731 404197 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(402731..404197) Streptococcus pneumoniae JJA 7680514 YP_002735522.1 CDS gatC NC_012466.1 404197 404499 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(404197..404499) Streptococcus pneumoniae JJA 7678675 YP_002735523.1 CDS prfC NC_012466.1 404712 406256 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 404712..406256 Streptococcus pneumoniae JJA 7678442 YP_002735524.1 CDS SPJ_0424 NC_012466.1 406525 407010 D identified by match to protein family HMM PF01501; glycosyl transferase, family 8 406525..407010 Streptococcus pneumoniae JJA 7679053 YP_002735525.1 CDS rpmB NC_012466.1 407126 407314 D required for 70S ribosome assembly; 50S ribosomal protein L28 407126..407314 Streptococcus pneumoniae JJA 7679651 YP_002735526.1 CDS SPJ_0426 NC_012466.1 407471 407836 D identified by match to protein family HMM PF03780; alkaline shock protein 407471..407836 Streptococcus pneumoniae JJA 7680256 YP_002735527.1 CDS SPJ_0427 NC_012466.1 407839 409506 D identified by match to protein family HMM PF02734; dihydroxyacetone kinase family protein 407839..409506 Streptococcus pneumoniae JJA 7678886 YP_002735528.1 CDS ilvB NC_012466.1 409706 411406 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase catalytic subunit 409706..411406 Streptococcus pneumoniae JJA 7679385 YP_002735529.1 CDS ilvH NC_012466.1 411399 411875 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 411399..411875 Streptococcus pneumoniae JJA 7679073 YP_002735530.1 CDS ilvC NC_012466.1 411941 412963 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 411941..412963 Streptococcus pneumoniae JJA 7679802 YP_002735531.1 CDS SPJ_0431 NC_012466.1 413166 413306 D hypothetical protein 413166..413306 Streptococcus pneumoniae JJA 7679192 YP_002735532.1 CDS SPJ_0432 NC_012466.1 413544 413900 D hypothetical protein 413544..413900 Streptococcus pneumoniae JJA 7678564 YP_002735533.1 CDS ilvA NC_012466.1 413950 415200 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 413950..415200 Streptococcus pneumoniae JJA 7680140 YP_002735534.1 CDS SPJ_0434 NC_012466.1 415342 415530 D hypothetical protein 415342..415530 Streptococcus pneumoniae JJA 7678816 YP_002735535.1 CDS SPJ_0435 NC_012466.1 416071 416286 D hypothetical protein 416071..416286 Streptococcus pneumoniae JJA 7679460 YP_002735536.1 CDS gltL NC_012466.1 416395 417135 R identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter, ATP-binding protein complement(416395..417135) Streptococcus pneumoniae JJA 7678878 YP_002735537.1 CDS SPJ_0437 NC_012466.1 417135 418700 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease/substrate-binding protein complement(417135..418700) Streptococcus pneumoniae JJA 7678491 YP_002735538.1 CDS SPJ_0439 NC_012466.1 418838 420727 D hypothetical protein 418838..420727 Streptococcus pneumoniae JJA 7680435 YP_002735539.1 CDS SPJ_0438 NC_012466.1 420724 420894 R hypothetical protein complement(420724..420894) Streptococcus pneumoniae JJA 7678669 YP_002735540.1 CDS SPJ_0440 NC_012466.1 420926 421897 R identified by match to protein family HMM PF02371; transposase complement(420926..421897) Streptococcus pneumoniae JJA 7679857 YP_002735541.1 CDS SPJ_0441 NC_012466.1 421984 422121 D identified by Glimmer3; putative; hypothetical protein 421984..422121 Streptococcus pneumoniae JJA 7679286 YP_002735542.1 CDS SPJ_0442 NC_012466.1 422152 422997 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 422152..422997 Streptococcus pneumoniae JJA 7679044 YP_002735543.1 CDS SPJ_0443 NC_012466.1 423144 424205 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(423144..424205) Streptococcus pneumoniae JJA 7679667 YP_002735544.1 CDS pflB NC_012466.1 424599 426923 D identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 424599..426923 Streptococcus pneumoniae JJA 7680499 YP_002735545.1 CDS SPJ_0445 NC_012466.1 427290 427508 R hypothetical protein complement(427290..427508) Streptococcus pneumoniae JJA 7678388 YP_002735546.1 CDS SPJ_0446 NC_012466.1 427835 428119 R hypothetical protein complement(427835..428119) Streptococcus pneumoniae JJA 7679426 YP_002735547.1 CDS SPJ_0447 NC_012466.1 428731 428901 R identified by Glimmer3; putative; hypothetical protein complement(428731..428901) Streptococcus pneumoniae JJA 7679883 YP_002735548.1 CDS SPJ_0450 NC_012466.1 430043 431482 R identified by match to protein family HMM PF02386; potassium uptake protein, Trk family complement(430043..431482) Streptococcus pneumoniae JJA 7680329 YP_002735549.1 CDS trkA NC_012466.1 431486 432835 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(431486..432835) Streptococcus pneumoniae JJA 7679530 YP_002735550.1 CDS SPJ_0452 NC_012466.1 433023 433871 D identified by match to protein family HMM PF01887; hypothetical protein 433023..433871 Streptococcus pneumoniae JJA 7678995 YP_002735551.1 CDS SPJ_0453 NC_012466.1 433886 434434 D identified by match to protein family HMM PF07155; hypothetical protein 433886..434434 Streptococcus pneumoniae JJA 7679380 YP_002735552.1 CDS SPJ_0454 NC_012466.1 434441 434653 D hypothetical protein 434441..434653 Streptococcus pneumoniae JJA 7680532 YP_002735553.1 CDS SPJ_0455 NC_012466.1 434755 436437 D identified by match to protein family HMM PF00005; putative ABC transporter ATP-binding protein 434755..436437 Streptococcus pneumoniae JJA 7679801 YP_002735554.1 CDS SPJ_0456 NC_012466.1 436422 437252 D identified by match to protein family HMM PF02361; cobalt transport family protein 436422..437252 Streptococcus pneumoniae JJA 7679157 YP_002735555.1 CDS cspR NC_012466.1 437445 437948 D identified by match to protein family HMM PF00588; CspR 437445..437948 Streptococcus pneumoniae JJA 7678532 YP_002735556.1 CDS SPJ_0458 NC_012466.1 438401 438964 D hypothetical protein 438401..438964 Streptococcus pneumoniae JJA 7678541 YP_002735557.1 CDS SPJ_0459 NC_012466.1 438978 439604 D identified by match to protein family HMM PF01569; PAP2 family protein 438978..439604 Streptococcus pneumoniae JJA 7680395 YP_002735558.1 CDS SPJ_0460 NC_012466.1 439632 440021 D hypothetical protein 439632..440021 Streptococcus pneumoniae JJA 7680205 YP_002735559.1 CDS SPJ_0461 NC_012466.1 440026 440475 D hypothetical protein 440026..440475 Streptococcus pneumoniae JJA 7679583 YP_002735560.1 CDS rpoE NC_012466.1 440603 441190 D participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 440603..441190 Streptococcus pneumoniae JJA 7679443 YP_002735561.1 CDS SPJ_0463 NC_012466.1 441280 441405 R identified by Glimmer3; putative; hypothetical protein complement(441280..441405) Streptococcus pneumoniae JJA 7678815 YP_002735562.1 CDS pyrG NC_012466.1 441580 443187 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 441580..443187 Streptococcus pneumoniae JJA 7678835 YP_002735563.1 CDS SPJ_0467 NC_012466.1 445741 450579 D identified by match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF03644; match to protein family HMM PF07501; match to protein family HMM PF07523; match to protein family HMM PF07554; match to protein family HMM TIGR01167; endo-beta-N-acetylglucosaminidase D 445741..450579 Streptococcus pneumoniae JJA 7679808 YP_002735564.1 CDS pgk NC_012466.1 450669 451865 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 450669..451865 Streptococcus pneumoniae JJA 7678497 YP_002735565.1 CDS SPJ_0469 NC_012466.1 452001 452528 D hypothetical protein 452001..452528 Streptococcus pneumoniae JJA 7680188 YP_002735566.1 CDS SPJ_0470 NC_012466.1 452605 452961 D identified by match to protein family HMM PF00376; HTH-type transcriptional regulator GlnR 452605..452961 Streptococcus pneumoniae JJA 7679678 YP_002735567.1 CDS glnA NC_012466.1 452998 454344 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 452998..454344 Streptococcus pneumoniae JJA 7679297 YP_002735568.1 CDS SPJ_0472 NC_012466.1 454440 454559 R hypothetical protein complement(454440..454559) Streptococcus pneumoniae JJA 7678452 YP_002735569.1 CDS SPJ_0473 NC_012466.1 454817 454954 D hypothetical protein 454817..454954 Streptococcus pneumoniae JJA 7680289 YP_002735570.1 CDS SPJ_0474 NC_012466.1 455422 456402 D identified by match to protein family HMM PF01420; type I restriction enzyme 455422..456402 Streptococcus pneumoniae JJA 7680470 YP_002735571.1 CDS SPJ_0475 NC_012466.1 456969 457766 R identified by match to protein family HMM PF00589; integrase/recombinase, phage integrase family complement(456969..457766) Streptococcus pneumoniae JJA 7679054 YP_002735572.1 CDS SPJ_0476 NC_012466.1 457823 459391 R identified by match to protein family HMM PF01420; type I site-specific deoxyribonuclease chain S complement(457823..459391) Streptococcus pneumoniae JJA 7679248 YP_002735573.1 CDS SPJ_0477 NC_012466.1 459391 460854 R identified by match to protein family HMM PF02384; type I restriction enzyme complement(459391..460854) Streptococcus pneumoniae JJA 7678901 YP_002735574.1 CDS SPJ_0478 NC_012466.1 460867 463200 R identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463; type I restriction-modification system, R subunit complement(460867..463200) Streptococcus pneumoniae JJA 7678977 YP_002735575.1 CDS SPJ_0479 NC_012466.1 463579 463773 D hypothetical protein 463579..463773 Streptococcus pneumoniae JJA 7678635 YP_002735576.1 CDS SPJ_0480 NC_012466.1 463808 464317 D hypothetical protein 463808..464317 Streptococcus pneumoniae JJA 7679104 YP_002735577.1 CDS hrcA NC_012466.1 464481 465515 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 464481..465515 Streptococcus pneumoniae JJA 7678654 YP_002735578.1 CDS grpE NC_012466.1 465542 466066 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 465542..466066 Streptococcus pneumoniae JJA 7680218 YP_002735579.1 CDS dnaK NC_012466.1 466546 468369 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 466546..468369 Streptococcus pneumoniae JJA 7679494 YP_002735580.1 CDS dnaJ NC_012466.1 469129 470265 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 469129..470265 Streptococcus pneumoniae JJA 7679493 YP_002735581.1 CDS SPJ_0485 NC_012466.1 470577 470906 R hypothetical protein complement(470577..470906) Streptococcus pneumoniae JJA 7678887 YP_002735582.1 CDS SPJ_0486 NC_012466.1 471068 471355 R hypothetical protein complement(471068..471355) Streptococcus pneumoniae JJA 7680519 YP_002735583.1 CDS SPJ_0487 NC_012466.1 471365 471775 R identified by match to protein family HMM PF01230; histidine triad domain protein complement(471365..471775) Streptococcus pneumoniae JJA 7679769 YP_002735584.1 CDS SPJ_0488 NC_012466.1 471843 472574 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 471843..472574 Streptococcus pneumoniae JJA 7679970 YP_002735585.1 CDS SPJ_0489 NC_012466.1 472571 473620 D identified by match to protein family HMM PF05975; ABC transporter permease 472571..473620 Streptococcus pneumoniae JJA 7680408 YP_002735586.1 CDS SPJ_0490 NC_012466.1 473788 474117 R BlpT protein, fusion complement(473788..474117) Streptococcus pneumoniae JJA 7679553 YP_002735587.1 CDS SPJ_0491 NC_012466.1 474393 474731 D identified by match to protein family HMM PF04397; BlpS protein 474393..474731 Streptococcus pneumoniae JJA 7680048 YP_002735588.1 CDS SPJ_0492 NC_012466.1 474736 475473 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; response regulator BlpR 474736..475473 Streptococcus pneumoniae JJA 7679429 YP_002735589.1 CDS SPJ_0493 NC_012466.1 475487 476827 D identified by match to protein family HMM PF02518; histidine kinase 475487..476827 Streptococcus pneumoniae JJA 7679786 YP_002735590.1 CDS SPJ_0494 NC_012466.1 476898 477026 R identified by match to protein family HMM PF08128; match to protein family HMM TIGR01847; double glycine cleavage site bacteriolysin complement(476898..477026) Streptococcus pneumoniae JJA 7680398 YP_002735591.1 CDS SPJ_0495 NC_012466.1 477083 478444 R identified by match to protein family HMM TIGR01000; BlpC ABC transporter complement(477083..478444) Streptococcus pneumoniae JJA 7678556 YP_002735592.1 CDS SPJ_0498 NC_012466.1 480894 481148 D identified by match to protein family HMM TIGR01847; BlpM 480894..481148 Streptococcus pneumoniae JJA 7679514 YP_002735593.1 CDS SPJ_0499 NC_012466.1 481164 481367 D hypothetical protein 481164..481367 Streptococcus pneumoniae JJA 7679716 YP_002735594.1 CDS SPJ_0500 NC_012466.1 481611 481760 D identified by match to protein family HMM TIGR01847; hypothetical protein 481611..481760 Streptococcus pneumoniae JJA 7679111 YP_002735595.1 CDS SPJ_0501 NC_012466.1 481742 481861 D hypothetical protein 481742..481861 Streptococcus pneumoniae JJA 7678639 YP_002735596.1 CDS SPJ_0502 NC_012466.1 481864 481983 D hypothetical protein 481864..481983 Streptococcus pneumoniae JJA 7680113 YP_002735597.1 CDS SPJ_0503 NC_012466.1 482281 482445 D hypothetical protein 482281..482445 Streptococcus pneumoniae JJA 7679593 YP_002735598.1 CDS SPJ_0505 NC_012466.1 483023 483202 D hypothetical protein 483023..483202 Streptococcus pneumoniae JJA 7679476 YP_002735599.1 CDS SPJ_0506 NC_012466.1 483474 483857 D immunity protein BlpX 483474..483857 Streptococcus pneumoniae JJA 7680236 YP_002735600.1 CDS SPJ_0507 NC_012466.1 483909 484598 D identified by match to protein family HMM PF02517; BlpY protein 483909..484598 Streptococcus pneumoniae JJA 7678527 YP_002735601.1 CDS SPJ_0508 NC_012466.1 484640 484888 D BlpZ 484640..484888 Streptococcus pneumoniae JJA 7680413 YP_002735602.1 CDS SPJ_0509 NC_012466.1 484918 485529 D identified by match to protein family HMM PF02517; ABC transporter ATP-binding protein 484918..485529 Streptococcus pneumoniae JJA 7678631 YP_002735603.1 CDS SPJ_0510 NC_012466.1 485690 486484 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family 485690..486484 Streptococcus pneumoniae JJA 7680367 YP_002735604.1 CDS trmB NC_012466.1 486481 487116 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 486481..487116 Streptococcus pneumoniae JJA 7680516 YP_002735605.1 CDS SPJ_0512 NC_012466.1 487242 487721 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 487242..487721 Streptococcus pneumoniae JJA 7679709 YP_002735606.1 CDS nusA NC_012466.1 487765 488901 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 487765..488901 Streptococcus pneumoniae JJA 7678954 YP_002735607.1 CDS SPJ_0514 NC_012466.1 488923 489216 D identified by match to protein family HMM PF04296; putative chain a, hypothetical cytosolic protein coded by gene from nusainfb, ylxr homologue 488923..489216 Streptococcus pneumoniae JJA 7679262 YP_002735608.1 CDS SPJ_0515 NC_012466.1 489209 489508 D identified by match to protein family HMM PF01248; hypothetical protein 489209..489508 Streptococcus pneumoniae JJA 7678772 YP_002735609.1 CDS infB NC_012466.1 489525 492317 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 489525..492317 Streptococcus pneumoniae JJA 7680471 YP_002735610.1 CDS rbfA NC_012466.1 492568 492918 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 492568..492918 Streptococcus pneumoniae JJA 7679994 YP_002735611.1 CDS SPJ_0518 NC_012466.1 493197 493976 D hypothetical protein 493197..493976 Streptococcus pneumoniae JJA 7678992 YP_002735612.1 CDS SPJ_0519 NC_012466.1 493978 494160 D hypothetical protein 493978..494160 Streptococcus pneumoniae JJA 7678512 YP_002735613.1 CDS SPJ_0520 NC_012466.1 494437 494589 R identified by Glimmer3; putative; hypothetical protein complement(494437..494589) Streptococcus pneumoniae JJA 7679360 YP_002735614.1 CDS SPJ_0521 NC_012466.1 494620 494853 D identified by match to protein family HMM PF08984; hypothetical protein 494620..494853 Streptococcus pneumoniae JJA 7680094 YP_002735615.1 CDS SPJ_0522 NC_012466.1 494853 496187 D identified by match to protein family HMM PF01814; match to protein family HMM PF04282; hemerythrin HHE cation binding domain subfamily, putative 494853..496187 Streptococcus pneumoniae JJA 7679065 YP_002735616.1 CDS SPJ_0523 NC_012466.1 496197 496451 D identified by match to protein family HMM PF08930; hypothetical protein 496197..496451 Streptococcus pneumoniae JJA 7679529 YP_002735617.1 CDS SPJ_0524 NC_012466.1 496547 496942 D superfamily II helicase 496547..496942 Streptococcus pneumoniae JJA 7680325 YP_002735618.1 CDS SPJ_0525 NC_012466.1 497354 497512 D identified by Glimmer3; putative; hypothetical protein 497354..497512 Streptococcus pneumoniae JJA 7678553 YP_002735619.1 CDS SPJ_0526 NC_012466.1 497496 497804 D identified by Glimmer3; putative; hypothetical protein 497496..497804 Streptococcus pneumoniae JJA 7679859 YP_002735620.1 CDS SPJ_0527 NC_012466.1 497791 498348 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 497791..498348 Streptococcus pneumoniae JJA 7680357 YP_002735621.1 CDS SPJ_0528 NC_012466.1 498350 499312 D hypothetical protein 498350..499312 Streptococcus pneumoniae JJA 7678894 YP_002735622.1 CDS valS NC_012466.1 499324 501975 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 499324..501975 Streptococcus pneumoniae JJA 7679412 YP_002735623.1 CDS SPJ_0530 NC_012466.1 502045 502800 D hypothetical protein 502045..502800 Streptococcus pneumoniae JJA 7679879 YP_002735624.1 CDS SPJ_0531 NC_012466.1 503085 503888 D identified by match to protein family HMM PF02661; Fic protein family 503085..503888 Streptococcus pneumoniae JJA 7678845 YP_002735625.1 CDS SPJ_0532 NC_012466.1 504157 506589 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01896; match to protein family HMM PF04851; DEAD/DEAH box helicase, putative 504157..506589 Streptococcus pneumoniae JJA 7679459 YP_002735626.1 CDS SPJ_0533 NC_012466.1 506780 506941 D hypothetical protein 506780..506941 Streptococcus pneumoniae JJA 7679793 YP_002735627.1 CDS pheS NC_012466.1 507310 508356 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 507310..508356 Streptococcus pneumoniae JJA 7680426 YP_002735628.1 CDS SPJ_0535 NC_012466.1 508356 508865 D identified by match to protein family HMM PF00583; hypothetical acetyltransferase in PepI 3'region 508356..508865 Streptococcus pneumoniae JJA 7679115 YP_002735629.1 CDS pheT NC_012466.1 508942 511347 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 508942..511347 Streptococcus pneumoniae JJA 7679722 YP_002735630.1 CDS SPJ_0537 NC_012466.1 511415 512416 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family complement(511415..512416) Streptococcus pneumoniae JJA 7680145 YP_002735631.1 CDS SPJ_0538 NC_012466.1 512572 513066 D transposase 512572..513066 Streptococcus pneumoniae JJA 7678467 YP_002735632.1 CDS SPJ_0539 NC_012466.1 513145 513411 D identified by match to protein family HMM PF01381; helix-turn-helix domain protein 513145..513411 Streptococcus pneumoniae JJA 7679463 YP_002735633.1 CDS metE NC_012466.1 513672 515921 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 513672..515921 Streptococcus pneumoniae JJA 7679516 YP_002735634.1 CDS metF NC_012466.1 515985 516851 D identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 515985..516851 Streptococcus pneumoniae JJA 7680201 YP_002735635.1 CDS SPJ_0542 NC_012466.1 517536 519749 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 517536..519749 Streptococcus pneumoniae JJA 7679502 YP_002735636.1 CDS cysE NC_012466.1 519765 520382 D identified by match to protein family HMM TIGR01172; serine O-acetyltransferase 519765..520382 Streptococcus pneumoniae JJA 7679979 YP_002735637.1 CDS SPJ_0544 NC_012466.1 520394 521278 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 520394..521278 Streptococcus pneumoniae JJA 7679358 YP_002735638.1 CDS cysS NC_012466.1 521365 522708 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 521365..522708 Streptococcus pneumoniae JJA 7678689 YP_002735639.1 CDS SPJ_0546 NC_012466.1 522701 523087 D identified by match to protein family HMM PF00636; ribonuclease III family protein 522701..523087 Streptococcus pneumoniae JJA 7680249 YP_002735640.1 CDS SPJ_0547 NC_012466.1 523091 523975 D leucine-rich protein 523091..523975 Streptococcus pneumoniae JJA 7679671 YP_002735641.1 CDS SPJ_0548 NC_012466.1 524022 525278 R identified by match to protein family HMM PF01610; transposase complement(524022..525278) Streptococcus pneumoniae JJA 7679063 YP_002735642.1 CDS SPJ_0549 NC_012466.1 525641 526096 D hypothetical protein 525641..526096 Streptococcus pneumoniae JJA 7678406 YP_002735643.1 CDS SPJ_0550 NC_012466.1 526093 526239 D hypothetical protein 526093..526239 Streptococcus pneumoniae JJA 7679796 YP_002735644.1 CDS SPJ_0551 NC_012466.1 526385 526555 D GBSi1, group II intron, maturase 526385..526555 Streptococcus pneumoniae JJA 7678598 YP_002735645.1 CDS SPJ_0552 NC_012466.1 526909 528186 D identified by match to protein family HMM PF02687; peptide ABC transporter permease 526909..528186 Streptococcus pneumoniae JJA 7680059 YP_002735646.1 CDS SPJ_0553 NC_012466.1 528199 528846 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 528199..528846 Streptococcus pneumoniae JJA 7679572 YP_002735647.1 CDS SPJ_0554 NC_012466.1 528898 530277 D identified by match to protein family HMM PF02687; peptide ABC transporter permease 528898..530277 Streptococcus pneumoniae JJA 7679069 YP_002735648.1 CDS SPJ_0555 NC_012466.1 530589 531245 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; VncR, response regulator 530589..531245 Streptococcus pneumoniae JJA 7678587 YP_002735649.1 CDS SPJ_0556 NC_012466.1 531242 532570 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; VncS, histidine kinase 531242..532570 Streptococcus pneumoniae JJA 7679819 YP_002735650.1 CDS fba NC_012466.1 532711 533592 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 532711..533592 Streptococcus pneumoniae JJA 7679435 YP_002735651.1 CDS SPJ_0558 NC_012466.1 533913 535103 R identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794; oxidoreductase, NAD-binding complement(533913..535103) Streptococcus pneumoniae JJA 7678811 YP_002735652.1 CDS SPJ_0559 NC_012466.1 535399 536058 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease complement(535399..536058) Streptococcus pneumoniae JJA 7680128 YP_002735653.1 CDS SPJ_0560 NC_012466.1 536068 536745 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease complement(536068..536745) Streptococcus pneumoniae JJA 7679490 YP_002735654.1 CDS SPJ_0561 NC_012466.1 536758 537522 R identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein complement(536758..537522) Streptococcus pneumoniae JJA 7679483 YP_002735655.1 CDS SPJ_0562 NC_012466.1 537562 538320 R identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ complement(537562..538320) Streptococcus pneumoniae JJA 7678967 YP_002735656.1 CDS recJ NC_012466.1 538597 540819 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 538597..540819 Streptococcus pneumoniae JJA 7679548 YP_002735657.1 CDS SPJ_0564 NC_012466.1 540994 542655 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 540994..542655 Streptococcus pneumoniae JJA 7679927 YP_002735658.1 CDS SPJ_0565 NC_012466.1 542724 543503 D identified by match to protein family HMM PF00756; tributyrin esterase 542724..543503 Streptococcus pneumoniae JJA 7680503 YP_002735659.1 CDS SPJ_0566 NC_012466.1 543615 544835 D identified by match to protein family HMM PF02388; serine/alanine-adding enzyme MurM 543615..544835 Streptococcus pneumoniae JJA 7679315 YP_002735660.1 CDS SPJ_0567 NC_012466.1 544840 546072 D identified by match to protein family HMM PF02388; alanine adding enzyme 544840..546072 Streptococcus pneumoniae JJA 7679752 YP_002735661.1 CDS SPJ_0568 NC_012466.1 546151 546852 D identified by match to protein family HMM PF00413; matrixin family 546151..546852 Streptococcus pneumoniae JJA 7680447 YP_002735662.1 CDS uvrC NC_012466.1 546892 548739 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 546892..548739 Streptococcus pneumoniae JJA 7678744 YP_002735663.1 CDS SPJ_0572 NC_012466.1 549746 550546 R identified by match to protein family HMM PF00497; ABC transporter substrate-binding protein - glutamine transport/Major cell binding factor complement(549746..550546) Streptococcus pneumoniae JJA 7680355 YP_002735664.1 CDS SPJ_0573 NC_012466.1 550717 551322 D identified by match to protein family HMM PF00881; oxidoreductase 550717..551322 Streptococcus pneumoniae JJA 7679623 YP_002735665.1 CDS pepV NC_012466.1 551335 552735 D divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 551335..552735 Streptococcus pneumoniae JJA 7679100 YP_002735666.1 CDS SPJ_0575 NC_012466.1 552789 553367 D identified by match to protein family HMM PF03167; uracil DNA glycosylase family protein 552789..553367 Streptococcus pneumoniae JJA 7678618 YP_002735667.1 CDS SPJ_0576 NC_012466.1 553527 553679 D identified by Glimmer3; putative; hypothetical protein 553527..553679 Streptococcus pneumoniae JJA 7678609 YP_002735668.1 CDS SPJ_0577 NC_012466.1 553680 553814 D identified by Glimmer3; putative; hypothetical protein 553680..553814 Streptococcus pneumoniae JJA 7679785 YP_002735669.1 CDS brnQ NC_012466.1 553985 555310 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 553985..555310 Streptococcus pneumoniae JJA 7679351 YP_002735670.1 CDS SPJ_0579 NC_012466.1 555408 556445 D identified by match to protein family HMM PF05343; peptidase, M42 555408..556445 Streptococcus pneumoniae JJA 7678789 YP_002735671.1 CDS SPJ_0580 NC_012466.1 556447 556908 D identified by match to protein family HMM PF01230; HIT family protein 556447..556908 Streptococcus pneumoniae JJA 7678915 YP_002735672.1 CDS SPJ_0581 NC_012466.1 556926 557648 D identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 556926..557648 Streptococcus pneumoniae JJA 7679289 YP_002735673.1 CDS rplK NC_012466.1 557765 558190 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 557765..558190 Streptococcus pneumoniae JJA 7679626 YP_002735674.1 CDS rplA NC_012466.1 558398 559087 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 558398..559087 Streptococcus pneumoniae JJA 7679825 YP_002735675.1 CDS SPJ_0584 NC_012466.1 559176 559703 R transposase complement(559176..559703) Streptococcus pneumoniae JJA 7680420 YP_002735676.1 CDS SPJ_0585 NC_012466.1 559700 560482 R identified by match to protein family HMM PF01610; transposase complement(559700..560482) Streptococcus pneumoniae JJA 7678850 YP_002735677.1 CDS SPJ_0586 NC_012466.1 561046 561192 R chlorohydrolase complement(561046..561192) Streptococcus pneumoniae JJA 7679966 YP_002735678.1 CDS SPJ_0587 NC_012466.1 561206 561568 D hypothetical protein 561206..561568 Streptococcus pneumoniae JJA 7680530 YP_002735679.1 CDS SPJ_0588 NC_012466.1 562613 563605 D identified by match to protein family HMM PF00005; polysaccharide ABC transporter ATP-binding protein 562613..563605 Streptococcus pneumoniae JJA 7678474 YP_002735680.1 CDS SPJ_0589 NC_012466.1 563607 564425 D identified by match to protein family HMM PF06182; membrane protein 563607..564425 Streptococcus pneumoniae JJA 7679093 YP_002735681.1 CDS SPJ_0590 NC_012466.1 564427 565212 D identified by match to protein family HMM PF06182; ABC transporter permease 564427..565212 Streptococcus pneumoniae JJA 7679101 YP_002735682.1 CDS SPJ_0591 NC_012466.1 565251 565622 D acetyltransferase, gnat family 565251..565622 Streptococcus pneumoniae JJA 7678685 YP_002735683.1 CDS SPJ_0592 NC_012466.1 566315 572731 D identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167; serine protease 566315..572731 Streptococcus pneumoniae JJA 7678944 YP_002735684.1 CDS SPJ_0593 NC_012466.1 573357 573833 D identified by match to protein family HMM PF00359; phosphotransferase system sugar-specific EII component 573357..573833 Streptococcus pneumoniae JJA 7678495 YP_002735685.1 CDS SPJ_0594 NC_012466.1 573871 574176 D PTS system, galactose-specific IIB component 573871..574176 Streptococcus pneumoniae JJA 7680460 YP_002735686.1 CDS SPJ_0595 NC_012466.1 574224 575699 D identified by match to protein family HMM PF03611; phosphotransferase system sugar-specific EII component 574224..575699 Streptococcus pneumoniae JJA 7680019 YP_002735687.1 CDS SPJ_0596 NC_012466.1 576049 582750 D identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; beta-galactosidase 576049..582750 Streptococcus pneumoniae JJA 7678921 YP_002735688.1 CDS SPJ_0597 NC_012466.1 582998 583621 R identified by Glimmer3; putative; hypothetical protein complement(582998..583621) Streptococcus pneumoniae JJA 7680341 YP_002735689.1 CDS SPJ_0598 NC_012466.1 583609 583854 R transposase complement(583609..583854) Streptococcus pneumoniae JJA 7680191 YP_002735690.1 CDS SPJ_0599 NC_012466.1 583824 583991 D identified by Glimmer3; putative; hypothetical protein 583824..583991 Streptococcus pneumoniae JJA 7679707 YP_002735691.1 CDS SPJ_0600 NC_012466.1 584065 584424 R integral membrane protein complement(584065..584424) Streptococcus pneumoniae JJA 7679391 YP_002735692.1 CDS SPJ_0603 NC_012466.1 585456 586013 D identified by match to protein family HMM PF06962; SAM-dependent methyltransferase 585456..586013 Streptococcus pneumoniae JJA 7678986 YP_002735693.1 CDS SPJ_0604 NC_012466.1 586006 586260 D hypothetical protein 586006..586260 Streptococcus pneumoniae JJA 7680228 YP_002735694.1 CDS SPJ_0605 NC_012466.1 586272 588326 D identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein 586272..588326 Streptococcus pneumoniae JJA 7679753 YP_002735695.1 CDS SPJ_0606 NC_012466.1 588505 589365 D identified by match to protein family HMM PF03631; ribonuclease BN 588505..589365 Streptococcus pneumoniae JJA 7679233 YP_002735696.1 CDS SPJ_0607 NC_012466.1 589576 590286 D identified by match to protein family HMM PF02683; cytoChrome c-type biogenesis protein 589576..590286 Streptococcus pneumoniae JJA 7680227 YP_002735697.1 CDS SPJ_0608 NC_012466.1 590306 590872 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein 590306..590872 Streptococcus pneumoniae JJA 7680449 YP_002735698.1 CDS SPJ_0609 NC_012466.1 590883 591995 D identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA/msrB 590883..591995 Streptococcus pneumoniae JJA 7679991 YP_002735699.1 CDS SPJ_0610 NC_012466.1 592353 593090 D identified by match to protein family HMM PF00072; match to protein family HMM PF00165; response regulator 592353..593090 Streptococcus pneumoniae JJA 7679920 YP_002735700.1 CDS SPJ_0611 NC_012466.1 593087 594778 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580; histidine kinase 593087..594778 Streptococcus pneumoniae JJA 7679503 YP_002735701.1 CDS SPJ_0612 NC_012466.1 594894 595457 D identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein 594894..595457 Streptococcus pneumoniae JJA 7679398 YP_002735702.1 CDS SPJ_0615 NC_012466.1 601209 602930 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553; chorismate binding enzyme 601209..602930 Streptococcus pneumoniae JJA 7679179 YP_002735703.1 CDS SPJ_0616 NC_012466.1 603050 604576 D pneumococcal surface protein, putative 603050..604576 Streptococcus pneumoniae JJA 7680485 YP_002735704.1 CDS SPJ_0617 NC_012466.1 604581 604724 R identified by Glimmer3; putative; hypothetical protein complement(604581..604724) Streptococcus pneumoniae JJA 7679011 YP_002735705.1 CDS SPJ_0618 NC_012466.1 604741 605526 D putative endo-beta-N-acetylglucosaminidase (Murein hydrolase) 604741..605526 Streptococcus pneumoniae JJA 7678501 YP_002735706.1 CDS SPJ_0619 NC_012466.1 605717 606676 D identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase (Glucose kinase) 605717..606676 Streptococcus pneumoniae JJA 7680461 YP_002735707.1 CDS thyA NC_012466.1 606773 607612 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 606773..607612 Streptococcus pneumoniae JJA 7680005 YP_002735708.1 CDS SPJ_0621 NC_012466.1 607660 607830 R hypothetical protein complement(607660..607830) Streptococcus pneumoniae JJA 7679097 YP_002735709.1 CDS miaA NC_012466.1 607927 608835 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 607927..608835 Streptococcus pneumoniae JJA 7678476 YP_002735710.1 CDS hflX NC_012466.1 608828 610066 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding proten HflX 608828..610066 Streptococcus pneumoniae JJA 7680050 YP_002735711.1 CDS SPJ_0624 NC_012466.1 610059 610682 D cystathionine beta-lyase 610059..610682 Streptococcus pneumoniae JJA 7679549 YP_002735712.1 CDS rnz NC_012466.1 610697 611626 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 610697..611626 Streptococcus pneumoniae JJA 7679080 YP_002735713.1 CDS SPJ_0626 NC_012466.1 611647 612402 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; oxidoreductase 611647..612402 Streptococcus pneumoniae JJA 7678644 YP_002735714.1 CDS SPJ_0627 NC_012466.1 612456 613424 R identified by match to protein family HMM PF00126; regulatory function on capsule expression complement(612456..613424) Streptococcus pneumoniae JJA 7678754 YP_002735715.1 CDS SPJ_0628 NC_012466.1 613428 613697 D identified by match to protein family HMM PF06014; hypothetical protein 613428..613697 Streptococcus pneumoniae JJA 7680457 YP_002735716.1 CDS SPJ_0629 NC_012466.1 613697 614077 D identified by match to protein family HMM PF00581; rhodanese family protein 613697..614077 Streptococcus pneumoniae JJA 7680077 YP_002735717.1 CDS SPJ_0630 NC_012466.1 614433 615158 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A, putative complement(614433..615158) Streptococcus pneumoniae JJA 7679622 YP_002735718.1 CDS typA NC_012466.1 615320 617161 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 615320..617161 Streptococcus pneumoniae JJA 7679420 YP_002735719.1 CDS SPJ_0632 NC_012466.1 617181 617435 D hypothetical protein 617181..617435 Streptococcus pneumoniae JJA 7679915 YP_002735720.1 CDS SPJ_0633 NC_012466.1 617752 617883 D hypothetical protein 617752..617883 Streptococcus pneumoniae JJA 7678933 YP_002735721.1 CDS SPJ_0637 NC_012466.1 620205 620846 D identified by match to protein family HMM PF00005; Na+ ABC transporter ATP-binding protein 620205..620846 Streptococcus pneumoniae JJA 7680079 YP_002735722.1 CDS murD NC_012466.1 620950 622302 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 620950..622302 Streptococcus pneumoniae JJA 7678508 YP_002735723.1 CDS murG NC_012466.1 622306 623364 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 622306..623364 Streptococcus pneumoniae JJA 7678801 YP_002735724.1 CDS SPJ_0640 NC_012466.1 623374 624573 D identified by match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein DivIB 623374..624573 Streptococcus pneumoniae JJA 7679481 YP_002735725.1 CDS pyrF NC_012466.1 624806 625507 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 624806..625507 Streptococcus pneumoniae JJA 7680446 YP_002735726.1 CDS pyrE NC_012466.1 625541 626173 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 625541..626173 Streptococcus pneumoniae JJA 7678743 YP_002735727.1 CDS SPJ_0643 NC_012466.1 626634 626756 D identified by Glimmer3; putative; hypothetical protein 626634..626756 Streptococcus pneumoniae JJA 7680100 YP_002735728.1 CDS SPJ_0644 NC_012466.1 626852 627616 D hypothetical protein 626852..627616 Streptococcus pneumoniae JJA 7678650 YP_002735729.1 CDS SPJ_0645 NC_012466.1 627616 628368 D lipoprotein, putative 627616..628368 Streptococcus pneumoniae JJA 7679161 YP_002735730.1 CDS SPJ_0646 NC_012466.1 628372 629076 D hypothetical protein 628372..629076 Streptococcus pneumoniae JJA 7679504 YP_002735731.1 CDS SPJ_0647 NC_012466.1 629073 629720 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 629073..629720 Streptococcus pneumoniae JJA 7678773 YP_002735732.1 CDS SPJ_0649 NC_012466.1 630673 631431 R identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ complement(630673..631431) Streptococcus pneumoniae JJA 7679770 YP_002735733.1 CDS SPJ_0650 NC_012466.1 631432 632109 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease complement(631432..632109) Streptococcus pneumoniae JJA 7679438 YP_002735734.1 CDS SPJ_0651 NC_012466.1 632069 632689 R amino acid ABC transporter permease complement(632069..632689) Streptococcus pneumoniae JJA 7680049 YP_002735735.1 CDS SPJ_0652 NC_012466.1 632816 632959 R identified by Glimmer3; putative; hypothetical protein complement(632816..632959) Streptococcus pneumoniae JJA 7678577 YP_002735736.1 CDS SPJ_0653 NC_012466.1 632963 633109 D hypothetical protein 632963..633109 Streptococcus pneumoniae JJA 7680180 YP_002735737.1 CDS lysS NC_012466.1 633237 634727 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 633237..634727 Streptococcus pneumoniae JJA 7679933 YP_002735738.1 CDS lctO NC_012466.1 635352 636488 D identified by match to protein family HMM PF01070; match to protein family HMM PF01180; match to protein family HMM TIGR02708; L-lactate oxidase 635352..636488 Streptococcus pneumoniae JJA 7679221 YP_002735739.1 CDS SPJ_0656 NC_012466.1 637045 637713 D identified by match to protein family HMM PF03070; tena/thi-4 family 637045..637713 Streptococcus pneumoniae JJA 7680067 YP_002735740.1 CDS thiM NC_012466.1 637950 638732 D catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 637950..638732 Streptococcus pneumoniae JJA 7680494 YP_002735741.1 CDS thiE1 NC_012466.1 638734 639363 D identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 638734..639363 Streptococcus pneumoniae JJA 7679182 YP_002735742.1 CDS SPJ_0659 NC_012466.1 639922 640482 D cobalt ABC transporter permease 639922..640482 Streptococcus pneumoniae JJA 7678574 YP_002735743.1 CDS SPJ_0660 NC_012466.1 640483 641868 D identified by match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 640483..641868 Streptococcus pneumoniae JJA 7679681 YP_002735744.1 CDS SPJ_0661 NC_012466.1 641870 642520 D hypothetical protein 641870..642520 Streptococcus pneumoniae JJA 7679088 YP_002735745.1 CDS SPJ_0662 NC_012466.1 642531 643223 D identified by match to protein family HMM PF03070; tena/thi-4 family 642531..643223 Streptococcus pneumoniae JJA 7678477 YP_002735746.1 CDS thiW NC_012466.1 643228 643752 D identified by match to protein family HMM TIGR02359; ThiW protein 643228..643752 Streptococcus pneumoniae JJA 7680065 YP_002735747.1 CDS SPJ_0664 NC_012466.1 643752 644555 D identified by match to protein family HMM PF02110; hydroxyethylthiazole kinase 643752..644555 Streptococcus pneumoniae JJA 7679454 YP_002735748.1 CDS thiE NC_012466.1 644548 645180 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 644548..645180 Streptococcus pneumoniae JJA 7678833 YP_002735749.1 CDS thiD NC_012466.1 645390 646181 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(645390..646181) Streptococcus pneumoniae JJA 7679400 YP_002735750.1 CDS SPJ_0667 NC_012466.1 646547 646942 D identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698; copper transport repressor, CopY/TcrY family 646547..646942 Streptococcus pneumoniae JJA 7678880 YP_002735751.1 CDS SPJ_0668 NC_012466.1 646953 647324 D hypothetical protein 646953..647324 Streptococcus pneumoniae JJA 7680312 YP_002735752.1 CDS SPJ_0669 NC_012466.1 647334 649577 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 647334..649577 Streptococcus pneumoniae JJA 7679860 YP_002735753.1 CDS spxB NC_012466.1 649784 651559 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720; pyruvate oxidase 649784..651559 Streptococcus pneumoniae JJA 7680032 YP_002735754.1 CDS SPJ_0671 NC_012466.1 651670 652017 D identified by match to protein family HMM PF00903; glyoxalase family protein 651670..652017 Streptococcus pneumoniae JJA 7678450 YP_002735755.1 CDS SPJ_0672 NC_012466.1 652134 652295 R hypothetical protein complement(652134..652295) Streptococcus pneumoniae JJA 7679106 YP_002735756.1 CDS SPJ_0673 NC_012466.1 652675 652941 R transposase complement(652675..652941) Streptococcus pneumoniae JJA 7679584 YP_002735757.1 CDS manA NC_012466.1 653869 654813 D identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase, class I 653869..654813 Streptococcus pneumoniae JJA 7679287 YP_002735758.1 CDS SPJ_0676 NC_012466.1 654835 656316 R identified by match to protein family HMM PF00209; sodium-dependent transporter complement(654835..656316) Streptococcus pneumoniae JJA 7679378 YP_002735759.1 CDS SPJ_0677 NC_012466.1 656527 656640 D transcriptional regulator, MerR family 656527..656640 Streptococcus pneumoniae JJA 7679835 YP_002735760.1 CDS SPJ_0678 NC_012466.1 656641 657147 D identified by match to protein family HMM PF07739; regulator of the multidrug efflux pump PmrA 656641..657147 Streptococcus pneumoniae JJA 7679508 YP_002735761.1 CDS SPJ_0679 NC_012466.1 657167 657583 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(657167..657583) Streptococcus pneumoniae JJA 7678889 YP_002735762.1 CDS SPJ_0680 NC_012466.1 657642 658817 R identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein complement(657642..658817) Streptococcus pneumoniae JJA 7679136 YP_002735763.1 CDS SPJ_0681 NC_012466.1 658876 659721 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein complement(658876..659721) Streptococcus pneumoniae JJA 7679736 YP_002735764.1 CDS SPJ_0682 NC_012466.1 659846 660403 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 659846..660403 Streptococcus pneumoniae JJA 7678395 YP_002735765.1 CDS SPJ_0683 NC_012466.1 660422 660889 D identified by match to protein family HMM PF00383; ComE operon protein 2 660422..660889 Streptococcus pneumoniae JJA 7679141 YP_002735766.1 CDS upp NC_012466.1 660957 661607 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 660957..661607 Streptococcus pneumoniae JJA 7680011 YP_002735767.1 CDS clpP NC_012466.1 661781 662371 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 661781..662371 Streptococcus pneumoniae JJA 7680127 YP_002735768.1 CDS SPJ_0686 NC_012466.1 662450 662698 D hypothetical protein 662450..662698 Streptococcus pneumoniae JJA 7679269 YP_002735769.1 CDS SPJ_0687 NC_012466.1 662799 663959 D identified by match to protein family HMM PF01094; ABC transporter substrate-binding protein - branched chain amino acid transport 662799..663959 Streptococcus pneumoniae JJA 7680030 YP_002735770.1 CDS SPJ_0688 NC_012466.1 664227 665096 D identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid transport system permeaseprotein LivH (LIV-I protein H) 664227..665096 Streptococcus pneumoniae JJA 7679735 YP_002735771.1 CDS SPJ_0689 NC_012466.1 665100 666056 D identified by match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 665100..666056 Streptococcus pneumoniae JJA 7680226 YP_002735772.1 CDS SPJ_0690 NC_012466.1 666056 666820 D identified by match to protein family HMM PF00005; high-affinity branched-chain amino acid transport ATP-binding proteinlivG (LIV-I protein G) 666056..666820 Streptococcus pneumoniae JJA 7679441 YP_002735773.1 CDS SPJ_0691 NC_012466.1 666820 667530 D identified by match to protein family HMM PF00005; high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) 666820..667530 Streptococcus pneumoniae JJA 7678803 YP_002735774.1 CDS SPJ_0692 NC_012466.1 667944 668600 D identified by match to protein family HMM PF00571; AcuB family protein 667944..668600 Streptococcus pneumoniae JJA 7680374 YP_002735775.1 CDS prfB NC_012466.1 668814 669803 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 668814..669803 Streptococcus pneumoniae JJA 7679631 YP_002735776.1 CDS ftsE NC_012466.1 669821 670513 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 669821..670513 Streptococcus pneumoniae JJA 7679172 YP_002735777.1 CDS SPJ_0695 NC_012466.1 670506 671432 D identified by match to protein family HMM PF02687; cell division ABC transporter, permease protein FtsX 670506..671432 Streptococcus pneumoniae JJA 7678399 YP_002735778.1 CDS SPJ_0696 NC_012466.1 671718 673898 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003; pts system, iibc component 671718..673898 Streptococcus pneumoniae JJA 7679617 YP_002735779.1 CDS SPJ_0697 NC_012466.1 673950 674765 D identified by match to protein family HMM PF03372; metal-dependent hydrolase 673950..674765 Streptococcus pneumoniae JJA 7680025 YP_002735780.1 CDS SPJ_0698 NC_012466.1 674905 676248 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; superfamily II DNA and RNA helicase 674905..676248 Streptococcus pneumoniae JJA 7679270 YP_002735781.1 CDS metK NC_012466.1 676464 677654 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 676464..677654 Streptococcus pneumoniae JJA 7678760 YP_002735782.1 CDS SPJ_0700 NC_012466.1 677744 677908 R hypothetical protein complement(677744..677908) Streptococcus pneumoniae JJA 7678846 YP_002735783.1 CDS SPJ_0701 NC_012466.1 678207 679142 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group; dihydroorotate dehydrogenase 1A 678207..679142 Streptococcus pneumoniae JJA 7680427 YP_002735784.1 CDS holA NC_012466.1 679176 680213 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 679176..680213 Streptococcus pneumoniae JJA 7680364 YP_002735785.1 CDS SPJ_0703 NC_012466.1 680386 680991 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase [Mn] (General stress protein 24)(GSP24) 680386..680991 Streptococcus pneumoniae JJA 7679903 YP_002735786.1 CDS SPJ_0704 NC_012466.1 681148 681678 D identified by match to protein family HMM PF06265; transcriptional regulator 681148..681678 Streptococcus pneumoniae JJA 7678546 YP_002735787.1 CDS SPJ_0705 NC_012466.1 681699 682601 D identified by match to protein family HMM TIGR00048; radical SAM enzyme, Cfr family 681699..682601 Streptococcus pneumoniae JJA 7680262 YP_002735788.1 CDS SPJ_0706 NC_012466.1 682601 683083 D identified by match to protein family HMM PF04892; VanZ family protein 682601..683083 Streptococcus pneumoniae JJA 7678970 YP_002735789.1 CDS SPJ_0707 NC_012466.1 683085 684626 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 683085..684626 Streptococcus pneumoniae JJA 7678908 YP_002735790.1 CDS SPJ_0708 NC_012466.1 684682 685485 R identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase, cyclophilin-type complement(684682..685485) Streptococcus pneumoniae JJA 7680380 YP_002735791.1 CDS SPJ_0709 NC_012466.1 685569 685772 R identified by Glimmer3; putative; hypothetical protein complement(685569..685772) Streptococcus pneumoniae JJA 7679763 YP_002735792.1 CDS SPJ_0710 NC_012466.1 685724 685900 R identified by Glimmer3; putative; hypothetical protein complement(685724..685900) Streptococcus pneumoniae JJA 7680333 YP_002735793.1 CDS SPJ_0711 NC_012466.1 686261 686470 R identified by Glimmer3; putative; hypothetical protein complement(686261..686470) Streptococcus pneumoniae JJA 7678930 YP_002735794.1 CDS rpsP NC_012466.1 686640 686912 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 686640..686912 Streptococcus pneumoniae JJA 7679382 YP_002735795.1 CDS SPJ_0713 NC_012466.1 686932 687171 D hypothetical protein 686932..687171 Streptococcus pneumoniae JJA 7679547 YP_002735796.1 CDS SPJ_0714 NC_012466.1 687748 688536 D identified by match to protein family HMM PF00561; hydrolase, alpha/beta fold family, putative 687748..688536 Streptococcus pneumoniae JJA 7680275 YP_002735797.1 CDS rimM NC_012466.1 688567 689085 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 688567..689085 Streptococcus pneumoniae JJA 7678615 YP_002735798.1 CDS trmD NC_012466.1 689075 689794 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 689075..689794 Streptococcus pneumoniae JJA 7678758 YP_002735799.1 CDS SPJ_0717 NC_012466.1 689806 690144 D identified by match to protein family HMM PF03477; oxygen-sensitive ribonucleoside-triphosphate reductase 689806..690144 Streptococcus pneumoniae JJA 7680371 YP_002735800.1 CDS SPJ_0718 NC_012466.1 690175 690495 R hypothetical protein complement(690175..690495) Streptococcus pneumoniae JJA 7680006 YP_002735801.1 CDS SPJ_0720 NC_012466.1 690593 690808 D hypothetical protein 690593..690808 Streptococcus pneumoniae JJA 7680464 YP_002735802.1 CDS SPJ_0719 NC_012466.1 690805 690951 R chlorohydrolase complement(690805..690951) Streptococcus pneumoniae JJA 7679186 YP_002735803.1 CDS SPJ_0721 NC_012466.1 691014 691550 R identified by match to protein family HMM PF02632; biotin synthase complement(691014..691550) Streptococcus pneumoniae JJA 7679534 YP_002735804.1 CDS SPJ_0722 NC_012466.1 691976 692314 D hypothetical protein 691976..692314 Streptococcus pneumoniae JJA 7679757 YP_002735805.1 CDS SPJ_0723 NC_012466.1 692380 694362 D antimicrobial peptide ABC transporter permease 692380..694362 Streptococcus pneumoniae JJA 7679014 YP_002735806.1 CDS SPJ_0724 NC_012466.1 694359 694982 D identified by match to protein family HMM PF00005; methionine import ATP-binding protein MetN 694359..694982 Streptococcus pneumoniae JJA 7678516 YP_002735807.1 CDS SPJ_0725 NC_012466.1 694979 695479 D hypothetical protein 694979..695479 Streptococcus pneumoniae JJA 7679971 YP_002735808.1 CDS gor NC_012466.1 695645 696991 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(695645..696991) Streptococcus pneumoniae JJA 7679223 YP_002735809.1 CDS SPJ_0727 NC_012466.1 697256 698455 D identified by match to protein family HMM TIGR01730; membrane-fusion protein 697256..698455 Streptococcus pneumoniae JJA 7678726 YP_002735810.1 CDS SPJ_0728 NC_012466.1 698439 699140 D identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB 698439..699140 Streptococcus pneumoniae JJA 7680242 YP_002735811.1 CDS SPJ_0729 NC_012466.1 699142 700401 D identified by match to protein family HMM PF02687; antimicrobial peptide ABC transporter permease 699142..700401 Streptococcus pneumoniae JJA 7679659 YP_002735812.1 CDS metG NC_012466.1 700525 702522 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 700525..702522 Streptococcus pneumoniae JJA 7678471 YP_002735813.1 CDS SPJ_0731 NC_012466.1 702572 702715 D identified by Glimmer3; putative; hypothetical protein 702572..702715 Streptococcus pneumoniae JJA 7679173 YP_002735814.1 CDS SPJ_0732 NC_012466.1 702853 703173 D identified by match to protein family HMM PF03551; transcriptional regulator, PadR family 702853..703173 Streptococcus pneumoniae JJA 7680546 YP_002735815.1 CDS SPJ_0733 NC_012466.1 703177 703992 D hypothetical protein 703177..703992 Streptococcus pneumoniae JJA 7680107 YP_002735816.1 CDS SPJ_0734 NC_012466.1 703982 704095 D identified by Glimmer3; putative; hypothetical protein 703982..704095 Streptococcus pneumoniae JJA 7680253 YP_002735817.1 CDS SPJ_0735 NC_012466.1 704067 704993 D identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 704067..704993 Streptococcus pneumoniae JJA 7679639 YP_002735818.1 CDS SPJ_0736 NC_012466.1 705089 705325 D hypothetical protein 705089..705325 Streptococcus pneumoniae JJA 7679325 YP_002735819.1 CDS fabG NC_012466.1 705318 706016 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 705318..706016 Streptococcus pneumoniae JJA 7678703 YP_002735820.1 CDS SPJ_0738 NC_012466.1 706027 706506 D identified by match to protein family HMM PF00293; MutT/nudix family protein 706027..706506 Streptococcus pneumoniae JJA 7678858 YP_002735821.1 CDS SPJ_0739 NC_012466.1 706514 707242 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 706514..707242 Streptococcus pneumoniae JJA 7680378 YP_002735822.1 CDS SPJ_0740 NC_012466.1 707284 708153 D identified by match to protein family HMM PF02896; PEP-utilizing enzyme family protein 707284..708153 Streptococcus pneumoniae JJA 7678550 YP_002735823.1 CDS SPJ_0741 NC_012466.1 708128 708568 D identified by match to protein family HMM PF06171; hypothetical protein 708128..708568 Streptococcus pneumoniae JJA 7680117 YP_002735824.1 CDS SPJ_0742 NC_012466.1 708691 711237 D identified by match to protein family HMM PF01433; aminopeptidase N 708691..711237 Streptococcus pneumoniae JJA 7680392 YP_002735825.1 CDS SPJ_0743 NC_012466.1 711295 712551 R identified by match to protein family HMM PF01610; transposase complement(711295..712551) Streptococcus pneumoniae JJA 7679778 YP_002735826.1 CDS SPJ_0744 NC_012466.1 712769 713443 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein CiaR 712769..713443 Streptococcus pneumoniae JJA 7678580 YP_002735827.1 CDS SPJ_0745 NC_012466.1 713433 714767 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein CiaH 713433..714767 Streptococcus pneumoniae JJA 7680439 YP_002735828.1 CDS SPJ_0746 NC_012466.1 714801 715088 R hypothetical protein complement(714801..715088) Streptococcus pneumoniae JJA 7678940 YP_002735829.1 CDS SPJ_0747 NC_012466.1 715228 716157 D identified by match to protein family HMM PF01136; protease 715228..716157 Streptococcus pneumoniae JJA 7678507 YP_002735830.1 CDS SPJ_0748 NC_012466.1 716357 718807 D unwinds DNA; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon 716357..718807 Streptococcus pneumoniae JJA 7680214 YP_002735831.1 CDS SPJ_0749 NC_012466.1 718844 720067 D identified by match to protein family HMM PF01098; RodA 718844..720067 Streptococcus pneumoniae JJA 7679723 YP_002735832.1 CDS SPJ_0750 NC_012466.1 720078 720632 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein 720078..720632 Streptococcus pneumoniae JJA 7678702 YP_002735833.1 CDS SPJ_0751 NC_012466.1 720717 721280 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 720717..721280 Streptococcus pneumoniae JJA 7680453 YP_002735834.1 CDS gyrB NC_012466.1 721295 723241 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 721295..723241 Streptococcus pneumoniae JJA 7679023 YP_002735835.1 CDS ezrA NC_012466.1 723323 725050 D acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 723323..725050 Streptococcus pneumoniae JJA 7678961 YP_002735836.1 CDS SPJ_0754 NC_012466.1 725779 726102 R identified by match to protein family HMM PF05717; IS66 family element, Orf2 complement(725779..726102) Streptococcus pneumoniae JJA 7680076 YP_002735837.1 CDS SPJ_0755 NC_012466.1 726363 726662 R identified by match to protein family HMM PF08860; hypothetical protein complement(726363..726662) Streptococcus pneumoniae JJA 7679571 YP_002735838.1 CDS SPJ_0757 NC_012466.1 727360 727689 D identified by match to protein family HMM PF01710; transposase 727360..727689 Streptococcus pneumoniae JJA 7679466 YP_002735839.1 CDS SPJ_0758 NC_012466.1 728024 728206 D Spn1, transposase Orf2 728024..728206 Streptococcus pneumoniae JJA 7679340 YP_002735840.1 CDS SPJ_0759 NC_012466.1 728413 730671 R identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence ClpC/mecB complement(728413..730671) Streptococcus pneumoniae JJA 7678555 YP_002735841.1 CDS SPJ_0760 NC_012466.1 730900 731130 R identified by match to protein family HMM PF08796; hypothetical protein complement(730900..731130) Streptococcus pneumoniae JJA 7680293 YP_002735842.1 CDS SPJ_0761 NC_012466.1 731320 732003 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 731320..732003 Streptococcus pneumoniae JJA 7679695 YP_002735843.1 CDS SPJ_0762 NC_012466.1 732003 732737 D identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ 732003..732737 Streptococcus pneumoniae JJA 7679748 YP_002735844.1 CDS SPJ_0763 NC_012466.1 732870 733748 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 732870..733748 Streptococcus pneumoniae JJA 7678981 YP_002735845.1 CDS SPJ_0764 NC_012466.1 733885 734706 D ABC-type phosphate transport system, ATPase component 733885..734706 Streptococcus pneumoniae JJA 7678823 YP_002735846.1 CDS SPJ_0765 NC_012466.1 734720 735559 D identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; putative YjeF homolog, C-terminus 734720..735559 Streptococcus pneumoniae JJA 7680147 YP_002735847.1 CDS rpiA NC_012466.1 735857 736540 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 735857..736540 Streptococcus pneumoniae JJA 7679444 YP_002735848.1 CDS deoB NC_012466.1 736554 737765 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 736554..737765 Streptococcus pneumoniae JJA 7678832 YP_002735849.1 CDS SPJ_0768 NC_012466.1 737767 738177 D identified by match to protein family HMM PF08002; hypothetical protein 737767..738177 Streptococcus pneumoniae JJA 7680409 YP_002735850.1 CDS SPJ_0769 NC_012466.1 738324 739133 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 738324..739133 Streptococcus pneumoniae JJA 7679795 YP_002735851.1 CDS SPJ_0770 NC_012466.1 739609 740004 D identified by Glimmer3; putative; hypothetical protein 739609..740004 Streptococcus pneumoniae JJA 7678573 YP_002735852.1 CDS SPJ_0771 NC_012466.1 740014 740589 D identified by Glimmer3; putative; hypothetical protein 740014..740589 Streptococcus pneumoniae JJA 7679164 YP_002735853.1 CDS SPJ_0772 NC_012466.1 740614 741126 D hemolysin-related protein 740614..741126 Streptococcus pneumoniae JJA 7679486 YP_002735854.1 CDS deoD NC_012466.1 741784 742494 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 741784..742494 Streptococcus pneumoniae JJA 7680116 YP_002735855.1 CDS SPJ_0774 NC_012466.1 742517 743041 R topology modulation protein complement(742517..743041) Streptococcus pneumoniae JJA 7679775 YP_002735856.1 CDS rpsT NC_012466.1 743094 743330 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(743094..743330) Streptococcus pneumoniae JJA 7680336 YP_002735857.1 CDS coaA NC_012466.1 743398 744318 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(743398..744318) Streptococcus pneumoniae JJA 7678565 YP_002735858.1 CDS SPJ_0777 NC_012466.1 744508 744744 D identified by Glimmer3; putative; hypothetical protein 744508..744744 Streptococcus pneumoniae JJA 7679077 YP_002735859.1 CDS SPJ_0778 NC_012466.1 745127 745708 D identified by match to protein family HMM PF05175; methyltransferase small domain superfamily 745127..745708 Streptococcus pneumoniae JJA 7680043 YP_002735860.1 CDS SPJ_0779 NC_012466.1 745705 746982 D Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 745705..746982 Streptococcus pneumoniae JJA 7678561 YP_002735861.1 CDS deoC NC_012466.1 747000 747662 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 747000..747662 Streptococcus pneumoniae JJA 7679888 YP_002735862.1 CDS cdd NC_012466.1 747649 748038 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 747649..748038 Streptococcus pneumoniae JJA 7678614 YP_002735863.1 CDS SPJ_0782 NC_012466.1 748129 749181 D identified by match to protein family HMM PF02608; lipoprotein 748129..749181 Streptococcus pneumoniae JJA 7678916 YP_002735864.1 CDS SPJ_0783 NC_012466.1 749325 750860 D identified by match to protein family HMM PF00005; ribose import ATP-binding protein RbsA 749325..750860 Streptococcus pneumoniae JJA 7679409 YP_002735865.1 CDS SPJ_0784 NC_012466.1 750853 751911 D identified by match to protein family HMM PF02653; ribose/galactose ABC transporter permease 750853..751911 Streptococcus pneumoniae JJA 7679570 YP_002735866.1 CDS SPJ_0785 NC_012466.1 751914 752870 D identified by match to protein family HMM PF02653; ribose/galactose ABC transporter permease 751914..752870 Streptococcus pneumoniae JJA 7680055 YP_002735867.1 CDS SPJ_0786 NC_012466.1 752955 753167 D transposase 752955..753167 Streptococcus pneumoniae JJA 7679605 YP_002735868.1 CDS SPJ_0787 NC_012466.1 753304 753471 D hypothetical protein 753304..753471 Streptococcus pneumoniae JJA 7680089 YP_002735869.1 CDS SPJ_0788 NC_012466.1 753471 754304 D identified by match to protein family HMM PF00665; integrase core domain protein 753471..754304 Streptococcus pneumoniae JJA 7678630 YP_002735870.1 CDS SPJ_0789 NC_012466.1 754347 754988 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(754347..754988) Streptococcus pneumoniae JJA 7679107 YP_002735871.1 CDS parE NC_012466.1 755124 757067 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 755124..757067 Streptococcus pneumoniae JJA 7678567 YP_002735872.1 CDS SPJ_0791 NC_012466.1 757188 757313 D identified by Glimmer3; putative; hypothetical protein 757188..757313 Streptococcus pneumoniae JJA 7680138 YP_002735873.1 CDS parC NC_012466.1 757478 759958 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 757478..759958 Streptococcus pneumoniae JJA 7679523 YP_002735874.1 CDS ilvE NC_012466.1 760090 761112 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 760090..761112 Streptococcus pneumoniae JJA 7679475 YP_002735875.1 CDS SPJ_0794 NC_012466.1 761168 761872 D hypothetical protein 761168..761872 Streptococcus pneumoniae JJA 7678828 YP_002735876.1 CDS SPJ_0795 NC_012466.1 761937 762626 D identified by match to protein family HMM PF06149; permease 761937..762626 Streptococcus pneumoniae JJA 7680410 YP_002735877.1 CDS SPJ_0796 NC_012466.1 762623 763546 D identified by match to protein family HMM PF06166; permease 762623..763546 Streptococcus pneumoniae JJA 7679167 YP_002735878.1 CDS pcp1 NC_012466.1 763561 764205 D catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 763561..764205 Streptococcus pneumoniae JJA 7678586 YP_002735879.1 CDS SPJ_0798 NC_012466.1 764373 764603 D hypothetical protein 764373..764603 Streptococcus pneumoniae JJA 7680164 YP_002735880.1 CDS rpsA NC_012466.1 764976 766178 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 764976..766178 Streptococcus pneumoniae JJA 7680594 YP_002735881.1 CDS SPJ_0802 NC_012466.1 766263 766766 R transposase complement(766263..766766) Streptococcus pneumoniae JJA 7679629 YP_002735882.1 CDS SPJ_0803 NC_012466.1 766763 767050 R identified by match to protein family HMM PF01610; transposase complement(766763..767050) Streptococcus pneumoniae JJA 7679273 YP_002735883.1 CDS SPJ_0804 NC_012466.1 767047 767418 R transposase complement(767047..767418) Streptococcus pneumoniae JJA 7678891 YP_002735884.1 CDS SPJ_0805 NC_012466.1 767758 768255 D GAF domain-containing protein 767758..768255 Streptococcus pneumoniae JJA 7680443 YP_002735885.1 CDS SPJ_0806 NC_012466.1 768255 769910 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 768255..769910 Streptococcus pneumoniae JJA 7680166 YP_002735886.1 CDS SPJ_0807 NC_012466.1 769938 770132 D hypothetical protein 769938..770132 Streptococcus pneumoniae JJA 7679537 YP_002735887.1 CDS sufC NC_012466.1 770282 771052 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 770282..771052 Streptococcus pneumoniae JJA 7679154 YP_002735888.1 CDS sufD NC_012466.1 771080 772342 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 771080..772342 Streptococcus pneumoniae JJA 7678521 YP_002735889.1 CDS SPJ_0810 NC_012466.1 772353 773579 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; cysteine desulfurase (Selenocysteine lyase) (Selenocysteine reductase) (Selenocysteine beta-lyase) (SCL) 772353..773579 Streptococcus pneumoniae JJA 7680448 YP_002735890.1 CDS SPJ_0811 NC_012466.1 773566 774006 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; SUF system FeS assembly protein, NifU family 773566..774006 Streptococcus pneumoniae JJA 7680014 YP_002735891.1 CDS sufB NC_012466.1 774060 775472 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 774060..775472 Streptococcus pneumoniae JJA 7679388 YP_002735892.1 CDS SPJ_0813 NC_012466.1 775671 776912 R identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943; penicillin-binding protein 3 complement(775671..776912) Streptococcus pneumoniae JJA 7679805 YP_002735893.1 CDS SPJ_0814 NC_012466.1 777093 778124 D identified by match to protein family HMM PF01594; membrane protein 777093..778124 Streptococcus pneumoniae JJA 7679501 YP_002735894.1 CDS SPJ_0816 NC_012466.1 779550 780290 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; transcriptional repressor of the fructose operon 779550..780290 Streptococcus pneumoniae JJA 7680559 YP_002735895.1 CDS pfkB NC_012466.1 780287 781198 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 1-phosphofructokinase 780287..781198 Streptococcus pneumoniae JJA 7678582 YP_002735896.1 CDS SPJ_0818 NC_012466.1 781195 783147 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose specific IIABC components 781195..783147 Streptococcus pneumoniae JJA 7679102 YP_002735897.1 CDS SPJ_0819 NC_012466.1 783159 783317 D identified by Glimmer3; putative; hypothetical protein 783159..783317 Streptococcus pneumoniae JJA 7679898 YP_002735898.1 CDS SPJ_0820 NC_012466.1 783311 785536 D identified by match to protein family HMM PF01580; DNA translocase ftsk 783311..785536 Streptococcus pneumoniae JJA 7680347 YP_002735899.1 CDS SPJ_0821 NC_012466.1 785687 786115 R hypothetical protein complement(785687..786115) Streptococcus pneumoniae JJA 7679884 YP_002735900.1 CDS SPJ_0822 NC_012466.1 786253 787395 D identified by match to protein family HMM PF00266; cysteine desulfurase 786253..787395 Streptococcus pneumoniae JJA 7680362 YP_002735901.1 CDS thiI NC_012466.1 787404 788618 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 787404..788618 Streptococcus pneumoniae JJA 7679604 YP_002735902.1 CDS SPJ_0824 NC_012466.1 788753 789577 D identified by match to protein family HMM PF00756; putative esterase superfamily 788753..789577 Streptococcus pneumoniae JJA 7679943 YP_002735903.1 CDS SPJ_0825 NC_012466.1 789590 790756 D carbamoylphosphate synthase large subunit 789590..790756 Streptococcus pneumoniae JJA 7678590 YP_002735904.1 CDS SPJ_0826 NC_012466.1 791264 792757 D identified by match to protein family HMM PF02384; type I restriction modification enzyme methylase subunit 791264..792757 Streptococcus pneumoniae JJA 7678978 YP_002735905.1 CDS SPJ_0827 NC_012466.1 792770 793786 D identified by match to protein family HMM PF01420; type I restriction-modification enzyme 1, S subunit 792770..793786 Streptococcus pneumoniae JJA 7679936 YP_002735906.1 CDS SPJ_0828 NC_012466.1 793783 794370 D identified by match to protein family HMM PF01420; type I restriction enzyme 793783..794370 Streptococcus pneumoniae JJA 7680522 YP_002735907.1 CDS SPJ_0829 NC_012466.1 794430 794666 D hypothetical protein 794430..794666 Streptococcus pneumoniae JJA 7679206 YP_002735908.1 CDS SPJ_0830 NC_012466.1 794663 795076 D identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; prophage maintenance system killer protein 794663..795076 Streptococcus pneumoniae JJA 7679249 YP_002735909.1 CDS SPJ_0831 NC_012466.1 795194 796159 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; integrase/recombinase, phage integrase family 795194..796159 Streptococcus pneumoniae JJA 7679594 YP_002735910.1 CDS SPJ_0832 NC_012466.1 796125 796763 D identified by match to protein family HMM PF01420; type I restriction-modification enzyme S subunit 796125..796763 Streptococcus pneumoniae JJA 7680075 YP_002735911.1 CDS SPJ_0833 NC_012466.1 796793 800143 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system R subunit 796793..800143 Streptococcus pneumoniae JJA 7680523 YP_002735912.1 CDS SPJ_0834 NC_012466.1 800649 801119 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor complement(800649..801119) Streptococcus pneumoniae JJA 7678809 YP_002735913.1 CDS SPJ_0835 NC_012466.1 801136 803409 R catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase complement(801136..803409) Streptococcus pneumoniae JJA 7679292 YP_002735914.1 CDS dnaE NC_012466.1 803756 806857 D Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 803756..806857 Streptococcus pneumoniae JJA 7679729 YP_002735915.1 CDS pfkA NC_012466.1 806940 807947 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 806940..807947 Streptococcus pneumoniae JJA 7680015 YP_002735916.1 CDS pyk NC_012466.1 808006 809511 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 808006..809511 Streptococcus pneumoniae JJA 7679524 YP_002735917.1 CDS SPJ_0839 NC_012466.1 811375 812190 D hypothetical protein 811375..812190 Streptococcus pneumoniae JJA 7679016 YP_002735918.1 CDS SPJ_0840 NC_012466.1 812297 812680 R mobile genetic element complement(812297..812680) Streptococcus pneumoniae JJA 7678461 YP_002735919.1 CDS SPJ_0841 NC_012466.1 812823 813104 D identified by Glimmer3; putative; hypothetical protein 812823..813104 Streptococcus pneumoniae JJA 7680416 YP_002735920.1 CDS SPJ_0842 NC_012466.1 813265 813855 D identified by Glimmer3; putative; hypothetical protein 813265..813855 Streptococcus pneumoniae JJA 7679804 YP_002735921.1 CDS SPJ_0843 NC_012466.1 813985 814800 R identified by match to protein family HMM PF09323; ABC transporter substrate-binding protein complement(813985..814800) Streptococcus pneumoniae JJA 7679719 YP_002735922.1 CDS SPJ_0844 NC_012466.1 814797 815702 R identified by match to protein family HMM PF03773; membrane protein complement(814797..815702) Streptococcus pneumoniae JJA 7679214 YP_002735923.1 CDS SPJ_0845 NC_012466.1 815703 815834 R identified by Glimmer3; putative; hypothetical protein complement(815703..815834) Streptococcus pneumoniae JJA 7678434 YP_002735924.1 CDS SPJ_0846 NC_012466.1 815948 816133 R identified by Glimmer3; putative; hypothetical protein complement(815948..816133) Streptococcus pneumoniae JJA 7678796 YP_002735925.1 CDS SPJ_0847 NC_012466.1 816249 818378 D identified by match to protein family HMM PF00575; S1 RNA binding domain protein 816249..818378 Streptococcus pneumoniae JJA 7680379 YP_002735926.1 CDS SPJ_0848 NC_012466.1 818365 818814 D identified by match to protein family HMM PF03926; hypothetical protein 818365..818814 Streptococcus pneumoniae JJA 7679891 YP_002735927.1 CDS SPJ_0849 NC_012466.1 818909 819145 D identified by match to protein family HMM PF04024; PspC domain family 818909..819145 Streptococcus pneumoniae JJA 7679191 YP_002735928.1 CDS SPJ_0850 NC_012466.1 819499 819690 R hypothetical protein complement(819499..819690) Streptococcus pneumoniae JJA 7678584 YP_002735929.1 CDS SPJ_0851 NC_012466.1 820118 820876 D identified by match to protein family HMM PF00005; bacitracin export ATP-binding protein BceA 820118..820876 Streptococcus pneumoniae JJA 7679078 YP_002735930.1 CDS SPJ_0852 NC_012466.1 820878 822866 D identified by match to protein family HMM PF02687; antimicrobial peptide ABC transporter permease 820878..822866 Streptococcus pneumoniae JJA 7678437 YP_002735931.1 CDS SPJ_0853 NC_012466.1 822908 823498 R identified by match to protein family HMM PF01988; integral membrane protein complement(822908..823498) Streptococcus pneumoniae JJA 7678895 YP_002735932.1 CDS SPJ_0854 NC_012466.1 823578 824453 R identified by match to protein family HMM PF00665; transposase complement(823578..824453) Streptococcus pneumoniae JJA 7680303 YP_002735933.1 CDS SPJ_0855 NC_012466.1 824686 824799 R hypothetical protein complement(824686..824799) Streptococcus pneumoniae JJA 7679969 YP_002735934.1 CDS SPJ_0857 NC_012466.1 825160 826635 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; arginine decarboxylase 825160..826635 Streptococcus pneumoniae JJA 7679030 YP_002735935.1 CDS SPJ_0856 NC_012466.1 826601 827071 R pilin gene inverting-related protein complement(826601..827071) Streptococcus pneumoniae JJA 7678617 YP_002735936.1 CDS SPJ_0858 NC_012466.1 827194 827316 R transposase complement(827194..827316) Streptococcus pneumoniae JJA 7679096 YP_002735937.1 CDS speE NC_012466.1 827572 828432 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 827572..828432 Streptococcus pneumoniae JJA 7680069 YP_002735938.1 CDS lys NC_012466.1 828429 829688 D identified by match to protein family HMM PF03435; saccharopine dehydrogenase 828429..829688 Streptococcus pneumoniae JJA 7679603 YP_002735939.1 CDS nspC NC_012466.1 829688 830815 D identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 829688..830815 Streptococcus pneumoniae JJA 7680545 YP_002735940.1 CDS aguA NC_012466.1 830812 831897 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 830812..831897 Streptococcus pneumoniae JJA 7679896 YP_002735941.1 CDS aguB NC_012466.1 831907 832782 D identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381; N-carbamoylputrescine amidase 831907..832782 Streptococcus pneumoniae JJA 7680118 YP_002735942.1 CDS SPJ_0864 NC_012466.1 832963 833772 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(832963..833772) Streptococcus pneumoniae JJA 7678931 YP_002735943.1 CDS SPJ_0865 NC_012466.1 834044 834265 D hypothetical protein 834044..834265 Streptococcus pneumoniae JJA 7679142 YP_002735944.1 CDS SPJ_0866 NC_012466.1 834319 834990 D identified by match to protein family HMM PF02517; caax amino protease family 834319..834990 Streptococcus pneumoniae JJA 7679484 YP_002735945.1 CDS SPJ_0867 NC_012466.1 835232 836140 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 835232..836140 Streptococcus pneumoniae JJA 7679263 YP_002735946.1 CDS lspA NC_012466.1 836137 836598 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 836137..836598 Streptococcus pneumoniae JJA 7679645 YP_002735947.1 CDS SPJ_0869 NC_012466.1 836588 837475 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) 836588..837475 Streptococcus pneumoniae JJA 7680469 YP_002735948.1 CDS SPJ_0870 NC_012466.1 837478 839361 D identified by match to protein family HMM PF00753; match to protein family HMM PF01473; choline binding protein E 837478..839361 Streptococcus pneumoniae JJA 7678783 YP_002735949.1 CDS proB NC_012466.1 839462 840571 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 839462..840571 Streptococcus pneumoniae JJA 7678911 YP_002735950.1 CDS proA NC_012466.1 840581 841843 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 840581..841843 Streptococcus pneumoniae JJA 7679422 YP_002735951.1 CDS proC NC_012466.1 841847 842644 D identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 841847..842644 Streptococcus pneumoniae JJA 7680221 YP_002735952.1 CDS tmk NC_012466.1 842864 843502 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 842864..843502 Streptococcus pneumoniae JJA 7679740 YP_002735953.1 CDS SPJ_0875 NC_012466.1 843499 844389 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA.; DNA polymerase III subunit delta' 843499..844389 Streptococcus pneumoniae JJA 7679254 YP_002735954.1 CDS SPJ_0876 NC_012466.1 844429 844746 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 844429..844746 Streptococcus pneumoniae JJA 7678764 YP_002735955.1 CDS SPJ_0877 NC_012466.1 844749 845618 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 844749..845618 Streptococcus pneumoniae JJA 7678953 YP_002735956.1 CDS SPJ_0878 NC_012466.1 845845 846363 D identified by match to protein family HMM PF08020; hypothetical protein 845845..846363 Streptococcus pneumoniae JJA 7679591 YP_002735957.1 CDS SPJ_0880 NC_012466.1 846472 847119 D identified by match to protein family HMM PF06970; phage protein 846472..847119 Streptococcus pneumoniae JJA 7678806 YP_002735958.1 CDS SPJ_0879 NC_012466.1 847108 847497 R identified by match to protein family HMM PF01609; transposase (IS4 family) complement(847108..847497) Streptococcus pneumoniae JJA 7678571 YP_002735959.1 CDS SPJ_0881 NC_012466.1 847514 847912 R mobile genetic element complement(847514..847912) Streptococcus pneumoniae JJA 7679449 YP_002735960.1 CDS trmFO NC_012466.1 848406 849740 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 848406..849740 Streptococcus pneumoniae JJA 7680137 YP_002735961.1 CDS pyrH NC_012466.1 849824 850561 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 849824..850561 Streptococcus pneumoniae JJA 7680184 YP_002735962.1 CDS frr NC_012466.1 850570 851127 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 850570..851127 Streptococcus pneumoniae JJA 7679708 YP_002735963.1 CDS SPJ_0885 NC_012466.1 851187 852041 D s1 RNA binding domain protein 851187..852041 Streptococcus pneumoniae JJA 7679867 YP_002735964.1 CDS SPJ_0886 NC_012466.1 852050 852265 D identified by match to protein family HMM PF06855; hypothetical protein 852050..852265 Streptococcus pneumoniae JJA 7679387 YP_002735965.1 CDS SPJ_0888 NC_012466.1 852351 853319 D identified by match to protein family HMM PF02562; PhoH family protein 852351..853319 Streptococcus pneumoniae JJA 7680493 YP_002735966.1 CDS SPJ_0887 NC_012466.1 853297 853422 R identified by Glimmer3; putative; hypothetical protein complement(853297..853422) Streptococcus pneumoniae JJA 7678956 YP_002735967.1 CDS SPJ_0889 NC_012466.1 853512 854012 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 853512..854012 Streptococcus pneumoniae JJA 7680036 YP_002735968.1 CDS SPJ_0890 NC_012466.1 854015 854242 D TfoX N- domain family protein 854015..854242 Streptococcus pneumoniae JJA 7678551 YP_002735969.1 CDS SPJ_0894 NC_012466.1 855930 856499 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 855930..856499 Streptococcus pneumoniae JJA 7678730 YP_002735970.1 CDS SPJ_0895 NC_012466.1 856567 857217 D identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259; competence protein 856567..857217 Streptococcus pneumoniae JJA 7680348 YP_002735971.1 CDS SPJ_0896 NC_012466.1 857201 859441 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 857201..859441 Streptococcus pneumoniae JJA 7679845 YP_002735972.1 CDS SPJ_0897 NC_012466.1 859841 860428 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 859841..860428 Streptococcus pneumoniae JJA 7679024 YP_002735973.1 CDS SPJ_0898 NC_012466.1 860432 861616 D hypothetical protein 860432..861616 Streptococcus pneumoniae JJA 7678548 YP_002735974.1 CDS SPJ_0899 NC_012466.1 861622 861771 R identified by Glimmer3; putative; hypothetical protein complement(861622..861771) Streptococcus pneumoniae JJA 7680026 YP_002735975.1 CDS infC NC_012466.1 861900 862457 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 861900..862457 Streptococcus pneumoniae JJA 7679541 YP_002735976.1 CDS rpmI NC_012466.1 862490 862690 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 862490..862690 Streptococcus pneumoniae JJA 7678777 YP_002735977.1 CDS rplT NC_012466.1 862742 863101 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 862742..863101 Streptococcus pneumoniae JJA 7680477 YP_002735978.1 CDS SPJ_0903 NC_012466.1 863159 863539 D identified by match to protein family HMM PF00903; lactoylglutathione lyase 863159..863539 Streptococcus pneumoniae JJA 7679840 YP_002735979.1 CDS SPJ_0904 NC_012466.1 863789 864589 D responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 863789..864589 Streptococcus pneumoniae JJA 7680300 YP_002735980.1 CDS SPJ_0905 NC_012466.1 864600 865538 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 864600..865538 Streptococcus pneumoniae JJA 7678830 YP_002735981.1 CDS SPJ_0906 NC_012466.1 865637 867613 D identified by match to protein family HMM PF01473; match to protein family HMM PF01832; endo-beta-N-acetylglucosaminidase 865637..867613 Streptococcus pneumoniae JJA 7679346 YP_002735982.1 CDS SPJ_0907 NC_012466.1 867674 869329 R identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin/fibrinogen binding protein complement(867674..869329) Streptococcus pneumoniae JJA 7679364 YP_002735983.1 CDS SPJ_0908 NC_012466.1 869434 869931 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 869434..869931 Streptococcus pneumoniae JJA 7679977 YP_002735984.1 CDS SPJ_0909 NC_012466.1 869912 870307 D identified by match to protein family HMM PF01219; diacylglycerol kinase (dagk) (diglyceride kinase)(dgk) 869912..870307 Streptococcus pneumoniae JJA 7678420 YP_002735985.1 CDS era NC_012466.1 870324 871223 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 870324..871223 Streptococcus pneumoniae JJA 7679017 YP_002735986.1 CDS mutM NC_012466.1 871272 872096 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 871272..872096 Streptococcus pneumoniae JJA 7679204 YP_002735987.1 CDS coaE NC_012466.1 872096 872701 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 872096..872701 Streptococcus pneumoniae JJA 7679495 YP_002735988.1 CDS SPJ_0913 NC_012466.1 872688 873887 D identified by match to protein family HMM PF07690; multidrug resistance protein MdtG 872688..873887 Streptococcus pneumoniae JJA 7678737 YP_002735989.1 CDS rpmG NC_012466.1 873887 874036 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 873887..874036 Streptococcus pneumoniae JJA 7679055 YP_002735990.1 CDS secG NC_012466.1 874076 874309 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 874076..874309 Streptococcus pneumoniae JJA 7679354 YP_002735991.1 CDS rnr NC_012466.1 874411 876765 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 874411..876765 Streptococcus pneumoniae JJA 7679712 YP_002735992.1 CDS smpB NC_012466.1 876728 877195 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 876728..877195 Streptococcus pneumoniae JJA 7679545 YP_002735993.1 CDS tehB NC_012466.1 877211 878071 D with TehA confers resistance to tellurite; tellurite resistance protein TehB 877211..878071 Streptococcus pneumoniae JJA 7680155 YP_002735994.1 CDS SPJ_0919 NC_012466.1 878144 879097 D identified by match to protein family HMM PF06054; competence protein 878144..879097 Streptococcus pneumoniae JJA 7679365 YP_002735995.1 CDS pepF1 NC_012466.1 879116 880918 D identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F 879116..880918 Streptococcus pneumoniae JJA 7680029 YP_002735996.1 CDS SPJ_0921 NC_012466.1 880956 881633 D identified by match to protein family HMM PF01596; match to protein family HMM PF08241; O-methyltransferase family protein 880956..881633 Streptococcus pneumoniae JJA 7679389 YP_002735997.1 CDS prsA NC_012466.1 881700 882641 D cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; foldase protein PrsA 881700..882641 Streptococcus pneumoniae JJA 7678924 YP_002735998.1 CDS SPJ_0923 NC_012466.1 882758 883099 R hypothetical protein complement(882758..883099) Streptococcus pneumoniae JJA 7679726 YP_002735999.1 CDS SPJ_0924 NC_012466.1 883099 883233 R transposase complement(883099..883233) Streptococcus pneumoniae JJA 7678852 YP_002736000.1 CDS SPJ_0925 NC_012466.1 883886 884506 R identified by match to protein family HMM PF00300; phosphoglycerate mutase complement(883886..884506) Streptococcus pneumoniae JJA 7679070 YP_002736001.1 CDS SPJ_0926 NC_012466.1 884506 884988 R identified by match to protein family HMM PF04073; regulatory protein complement(884506..884988) Streptococcus pneumoniae JJA 7679700 YP_002736002.1 CDS SPJ_0927 NC_012466.1 884988 885830 R identified by match to protein family HMM PF04018; integral membrane protein complement(884988..885830) Streptococcus pneumoniae JJA 7679811 YP_002736003.1 CDS SPJ_0928 NC_012466.1 885925 886725 R identified by match to protein family HMM PF01183; lyzozyme M1 complement(885925..886725) Streptococcus pneumoniae JJA 7680388 YP_002736004.1 CDS glmU NC_012466.1 886869 888248 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 886869..888248 Streptococcus pneumoniae JJA 7678698 YP_002736005.1 CDS SPJ_0930 NC_012466.1 888258 888803 D identified by match to protein family HMM PF00293; ADP-ribose pyrophosphatase 888258..888803 Streptococcus pneumoniae JJA 7679372 YP_002736006.1 CDS SPJ_0931 NC_012466.1 888815 889129 D hypothetical protein 888815..889129 Streptococcus pneumoniae JJA 7678863 YP_002736007.1 CDS mtnN NC_012466.1 889146 889838 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 889146..889838 Streptococcus pneumoniae JJA 7679367 YP_002736008.1 CDS SPJ_0933 NC_012466.1 889927 890406 D identified by match to protein family HMM PF04394; hypothetical protein 889927..890406 Streptococcus pneumoniae JJA 7679585 YP_002736009.1 CDS SPJ_0934 NC_012466.1 890504 891094 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 890504..891094 Streptococcus pneumoniae JJA 7679018 YP_002736010.1 CDS SPJ_0935 NC_012466.1 891103 892866 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 891103..892866 Streptococcus pneumoniae JJA 7680012 YP_002736011.1 CDS SPJ_0936 NC_012466.1 893080 893409 D identified by match to protein family HMM PF01710; Spn1 transposase 893080..893409 Streptococcus pneumoniae JJA 7680351 YP_002736012.1 CDS SPJ_0937 NC_012466.1 893588 893728 D hypothetical protein 893588..893728 Streptococcus pneumoniae JJA 7678428 YP_002736013.1 CDS SPJ_0938 NC_012466.1 893889 894089 D hypothetical protein 893889..894089 Streptococcus pneumoniae JJA 7679008 YP_002736014.1 CDS SPJ_0939 NC_012466.1 894131 894535 D hypothetical protein 894131..894535 Streptococcus pneumoniae JJA 7679929 YP_002736015.1 CDS SPJ_0940 NC_012466.1 894766 895473 D identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein CcdA 894766..895473 Streptococcus pneumoniae JJA 7680513 YP_002736016.1 CDS SPJ_0941 NC_012466.1 895484 896041 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thioredoxin family protein 895484..896041 Streptococcus pneumoniae JJA 7680526 YP_002736017.1 CDS SPJ_0942 NC_012466.1 896415 897806 D identified by match to protein family HMM PF00324; amino acid permease family protein 896415..897806 Streptococcus pneumoniae JJA 7679032 YP_002736018.1 CDS SPJ_0943 NC_012466.1 897949 898866 D identified by match to protein family HMM PF01297; zinc-binding lipoprotein AdcA 897949..898866 Streptococcus pneumoniae JJA 7679527 YP_002736019.1 CDS SPJ_0944 NC_012466.1 898874 901390 D identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363; pneumococcal histidine triad protein B 898874..901390 Streptococcus pneumoniae JJA 7680434 YP_002736020.1 CDS SPJ_0945 NC_012466.1 901600 904719 D identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363; pneumococcal histidine triad protein E 901600..904719 Streptococcus pneumoniae JJA 7679983 YP_002736021.1 CDS SPJ_0946 NC_012466.1 905880 906119 D identified by Glimmer3; putative; hypothetical protein 905880..906119 Streptococcus pneumoniae JJA 7679231 YP_002736022.1 CDS SPJ_0947 NC_012466.1 906414 907043 D hypothetical protein 906414..907043 Streptococcus pneumoniae JJA 7679282 YP_002736023.1 CDS pepT NC_012466.1 907079 908302 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(907079..908302) Streptococcus pneumoniae JJA 7678667 YP_002736024.1 CDS hemH NC_012466.1 908457 909551 D identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 908457..909551 Streptococcus pneumoniae JJA 7680521 YP_002736025.1 CDS mscL NC_012466.1 909593 909970 R identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein complement(909593..909970) Streptococcus pneumoniae JJA 7680141 YP_002736026.1 CDS SPJ_0951 NC_012466.1 910052 910483 R identified by match to protein family HMM PF04138; MesH protein complement(910052..910483) Streptococcus pneumoniae JJA 7679193 YP_002736027.1 CDS SPJ_0952 NC_012466.1 910606 911115 D identified by match to protein family HMM PF06177; citrulline cluster-linked protein 910606..911115 Streptococcus pneumoniae JJA 7678483 YP_002736028.1 CDS asd NC_012466.1 911918 912994 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 911918..912994 Streptococcus pneumoniae JJA 7680557 YP_002736029.1 CDS dapA NC_012466.1 913050 913985 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 913050..913985 Streptococcus pneumoniae JJA 7679844 YP_002736030.1 CDS trmE NC_012466.1 914032 915405 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(914032..915405) Streptococcus pneumoniae JJA 7679497 YP_002736031.1 CDS SPJ_0957 NC_012466.1 915541 915723 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(915541..915723) Streptococcus pneumoniae JJA 7680252 YP_002736032.1 CDS tdk NC_012466.1 915846 916436 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 915846..916436 Streptococcus pneumoniae JJA 7678700 YP_002736033.1 CDS prfA NC_012466.1 916433 917512 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 916433..917512 Streptococcus pneumoniae JJA 7679342 YP_002736034.1 CDS hemK NC_012466.1 917512 918351 D identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protein-(glutamine-N5) methyltransferase, release factor-specific 917512..918351 Streptococcus pneumoniae JJA 7679925 YP_002736035.1 CDS SPJ_0961 NC_012466.1 918335 918937 D identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 918335..918937 Streptococcus pneumoniae JJA 7680500 YP_002736036.1 CDS SPJ_0962 NC_012466.1 918939 919370 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein 918939..919370 Streptococcus pneumoniae JJA 7679183 YP_002736037.1 CDS glyA NC_012466.1 919432 920688 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 919432..920688 Streptococcus pneumoniae JJA 7679717 YP_002736038.1 CDS SPJ_0964 NC_012466.1 920696 921670 D hypothetical protein 920696..921670 Streptococcus pneumoniae JJA 7678714 YP_002736039.1 CDS SPJ_0965 NC_012466.1 921670 922284 D pneumococcal vaccine antigen A 921670..922284 Streptococcus pneumoniae JJA 7678748 YP_002736040.1 CDS SPJ_0966 NC_012466.1 922358 923332 D identified by match to protein family HMM PF06207; hypothetical protein 922358..923332 Streptococcus pneumoniae JJA 7679630 YP_002736041.1 CDS rumA1 NC_012466.1 923406 925037 D identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 923406..925037 Streptococcus pneumoniae JJA 7679143 YP_002736042.1 CDS SPJ_0968 NC_012466.1 925775 925993 D hypothetical protein 925775..925993 Streptococcus pneumoniae JJA 7678993 YP_002736043.1 CDS SPJ_0969 NC_012466.1 926386 927411 D identified by match to protein family HMM PF01497; ABC transporter substrate-binding protein - iron transport 926386..927411 Streptococcus pneumoniae JJA 7678486 YP_002736044.1 CDS SPJ_0970 NC_012466.1 927401 928408 D identified by match to protein family HMM PF01032; iron-compound ABC transporter, permease protein 927401..928408 Streptococcus pneumoniae JJA 7680452 YP_002736045.1 CDS SPJ_0971 NC_012466.1 928408 929415 D identified by match to protein family HMM PF01032; Fe3+ ABC transporter permease 928408..929415 Streptococcus pneumoniae JJA 7679999 YP_002736046.1 CDS SPJ_0972 NC_012466.1 929415 930209 D identified by match to protein family HMM PF00005; ferric enterobactin transport ATP-binding protein FepC 929415..930209 Streptococcus pneumoniae JJA 7680204 YP_002736047.1 CDS SPJ_0973 NC_012466.1 930777 930986 D identified by match to protein family HMM PF07674; hypothetical protein 930777..930986 Streptococcus pneumoniae JJA 7679737 YP_002736048.1 CDS SPJ_0974 NC_012466.1 931135 931266 D hypothetical protein 931135..931266 Streptococcus pneumoniae JJA 7678984 YP_002736049.1 CDS SPJ_0975 NC_012466.1 931950 932111 D hypothetical protein 931950..932111 Streptococcus pneumoniae JJA 7678591 YP_002736050.1 CDS SPJ_0978 NC_012466.1 934150 934716 D hypothetical protein 934150..934716 Streptococcus pneumoniae JJA 7679580 YP_002736051.1 CDS SPJ_0979 NC_012466.1 935038 935226 D hypothetical protein 935038..935226 Streptococcus pneumoniae JJA 7679574 YP_002736052.1 CDS SPJ_0980 NC_012466.1 935288 936103 D identified by Glimmer3; putative; hypothetical protein 935288..936103 Streptococcus pneumoniae JJA 7680178 YP_002736053.1 CDS SPJ_0981 NC_012466.1 936103 936957 D identified by match to protein family HMM PF03747; ADP-ribosylation/Crystallin J1 936103..936957 Streptococcus pneumoniae JJA 7678612 YP_002736054.1 CDS SPJ_0982 NC_012466.1 937069 937953 D identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147; hypothetical protein 937069..937953 Streptococcus pneumoniae JJA 7679820 YP_002736055.1 CDS SPJ_0983 NC_012466.1 938116 939855 D identified by match to protein family HMM PF00128; match to protein family HMM PF02903; neopullulanase 938116..939855 Streptococcus pneumoniae JJA 7680425 YP_002736056.1 CDS SPJ_0984 NC_012466.1 939941 940258 D hypothetical protein 939941..940258 Streptococcus pneumoniae JJA 7678793 YP_002736057.1 CDS SPJ_0985 NC_012466.1 940463 940585 D hypothetical protein 940463..940585 Streptococcus pneumoniae JJA 7678505 YP_002736058.1 CDS SPJ_0986 NC_012466.1 940725 940838 D hypothetical protein 940725..940838 Streptococcus pneumoniae JJA 7679846 YP_002736059.1 CDS SPJ_0987 NC_012466.1 941225 941506 D hypothetical protein 941225..941506 Streptococcus pneumoniae JJA 7679480 YP_002736060.1 CDS SPJ_0988 NC_012466.1 941506 942267 D identified by match to protein family HMM PF06414; signal recognition particle GTPase 941506..942267 Streptococcus pneumoniae JJA 7679907 YP_002736061.1 CDS SPJ_0989 NC_012466.1 942295 943071 D identified by Glimmer3; putative; hypothetical protein 942295..943071 Streptococcus pneumoniae JJA 7679421 YP_002736062.1 CDS SPJ_0990 NC_012466.1 942999 943451 D identified by Glimmer3; putative; hypothetical protein 942999..943451 Streptococcus pneumoniae JJA 7678397 YP_002736063.1 CDS SPJ_0991 NC_012466.1 944283 944642 D identified by Glimmer3; putative; hypothetical protein 944283..944642 Streptococcus pneumoniae JJA 7680119 YP_002736064.1 CDS SPJ_0992 NC_012466.1 944652 944981 D identified by match to protein family HMM PF05713; putative mobilization protein (MobC) 944652..944981 Streptococcus pneumoniae JJA 7679654 YP_002736065.1 CDS SPJ_0995 NC_012466.1 946302 946889 D chromosome segregation ATPase 946302..946889 Streptococcus pneumoniae JJA 7680320 YP_002736066.1 CDS SPJ_0996 NC_012466.1 946934 947788 R identified by match to protein family HMM TIGR01716; transcriptional regulator complement(946934..947788) Streptococcus pneumoniae JJA 7678479 YP_002736067.1 CDS SPJ_0997 NC_012466.1 948011 948559 D identified by Glimmer3; putative; hypothetical protein 948011..948559 Streptococcus pneumoniae JJA 7679041 YP_002736068.1 CDS SPJ_0998 NC_012466.1 948552 950675 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; match to protein family HMM PF03412; lantibiotic mersacidin transporter system 948552..950675 Streptococcus pneumoniae JJA 7679975 YP_002736069.1 CDS SPJ_0999 NC_012466.1 950688 950858 D hypothetical protein 950688..950858 Streptococcus pneumoniae JJA 7678391 YP_002736070.1 CDS SPJ_1000 NC_012466.1 950892 951620 D identified by match to protein family HMM PF00005; bacitracin transport ATP-binding protein BcrA 950892..951620 Streptococcus pneumoniae JJA 7678780 YP_002736071.1 CDS SPJ_1001 NC_012466.1 951613 952350 D hypothetical protein 951613..952350 Streptococcus pneumoniae JJA 7679312 YP_002736072.1 CDS SPJ_1002 NC_012466.1 952363 953073 D hypothetical protein 952363..953073 Streptococcus pneumoniae JJA 7680282 YP_002736073.1 CDS SPJ_1004 NC_012466.1 953615 953836 D identified by match to protein family HMM PF01381; hypothetical protein 953615..953836 Streptococcus pneumoniae JJA 7678711 YP_002736074.1 CDS SPJ_1003 NC_012466.1 953826 953975 R identified by Glimmer3; putative; hypothetical protein complement(953826..953975) Streptococcus pneumoniae JJA 7680506 YP_002736075.1 CDS SPJ_1005 NC_012466.1 954734 955963 D identified by match to protein family HMM PF01098; cell division protein FtsW 954734..955963 Streptococcus pneumoniae JJA 7679039 YP_002736076.1 CDS ppc NC_012466.1 955983 958679 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 955983..958679 Streptococcus pneumoniae JJA 7680175 YP_002736077.1 CDS SPJ_1007 NC_012466.1 959092 960096 D identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 959092..960096 Streptococcus pneumoniae JJA 7678443 YP_002736078.1 CDS SPJ_1008 NC_012466.1 960165 961031 D identified by match to protein family HMM PF02653; ABC transporter 960165..961031 Streptococcus pneumoniae JJA 7679241 YP_002736079.1 CDS SPJ_1009 NC_012466.1 961028 961786 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 961028..961786 Streptococcus pneumoniae JJA 7679710 YP_002736080.1 CDS dnaG NC_012466.1 961876 963636 D synthesizes RNA primers at the replication forks; DNA primase 961876..963636 Streptococcus pneumoniae JJA 7680442 YP_002736081.1 CDS SPJ_1011 NC_012466.1 963639 964748 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 963639..964748 Streptococcus pneumoniae JJA 7679126 YP_002736082.1 CDS SPJ_1012 NC_012466.1 964762 965091 D identified by match to protein family HMM PF01883; N-6 Adenine-specific DNA methylase YitW 964762..965091 Streptococcus pneumoniae JJA 7678441 YP_002736083.1 CDS SPJ_1013 NC_012466.1 965206 966249 D identified by match to protein family HMM PF00534; glycosyl transferase CpoA 965206..966249 Streptococcus pneumoniae JJA 7680037 YP_002736084.1 CDS SPJ_1014 NC_012466.1 966265 967590 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 966265..967590 Streptococcus pneumoniae JJA 7679637 YP_002736085.1 CDS SPJ_1015 NC_012466.1 967621 967797 D identified by match to protein family HMM PF04024; hypothetical protein 967621..967797 Streptococcus pneumoniae JJA 7679566 YP_002736086.1 CDS SPJ_1016 NC_012466.1 967856 967990 D hypothetical protein 967856..967990 Streptococcus pneumoniae JJA 7679374 YP_002736087.1 CDS obgE NC_012466.1 968054 969364 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 968054..969364 Streptococcus pneumoniae JJA 7678884 YP_002736088.1 CDS SPJ_1018 NC_012466.1 969374 969532 D hypothetical protein 969374..969532 Streptococcus pneumoniae JJA 7678638 YP_002736089.1 CDS murA1 NC_012466.1 970619 971878 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 970619..971878 Streptococcus pneumoniae JJA 7679800 YP_002736090.1 CDS SPJ_1020 NC_012466.1 971894 972445 D identified by match to protein family HMM PF00583; acetyltransferase, gnat family 971894..972445 Streptococcus pneumoniae JJA 7678860 YP_002736091.1 CDS SPJ_1021 NC_012466.1 972438 973715 D identified by match to protein family HMM PF00571; match to protein family HMM PF07085; match to protein family HMM PF08279; cytosolic protein containing multiple CBS domains 972438..973715 Streptococcus pneumoniae JJA 7680039 YP_002736092.1 CDS map NC_012466.1 973731 974591 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 973731..974591 Streptococcus pneumoniae JJA 7679798 YP_002736093.1 CDS SPJ_1023 NC_012466.1 974690 975232 D transposase 974690..975232 Streptococcus pneumoniae JJA 7679308 YP_002736094.1 CDS SPJ_1024 NC_012466.1 975385 975774 D identified by match to protein family HMM PF01609; transposase (IS4 family) 975385..975774 Streptococcus pneumoniae JJA 7679125 YP_002736095.1 CDS pcrA NC_012466.1 975965 978256 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 975965..978256 Streptococcus pneumoniae JJA 7679261 YP_002736096.1 CDS radC NC_012466.1 978299 978979 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 978299..978979 Streptococcus pneumoniae JJA 7680296 YP_002736097.1 CDS SPJ_1026 NC_012466.1 978976 979665 R identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase, class I complement(978976..979665) Streptococcus pneumoniae JJA 7678470 YP_002736098.1 CDS SPJ_1028 NC_012466.1 979683 980324 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(979683..980324) Streptococcus pneumoniae JJA 7678459 YP_002736099.1 CDS SPJ_1029 NC_012466.1 980407 980622 R hypothetical protein complement(980407..980622) Streptococcus pneumoniae JJA 7678994 YP_002736100.1 CDS SPJ_1030 NC_012466.1 980630 980977 R identified by match to protein family HMM PF08866; hypothetical protein complement(980630..980977) Streptococcus pneumoniae JJA 7680004 YP_002736101.1 CDS SPJ_1031 NC_012466.1 980982 982097 R identified by match to protein family HMM PF00266; putative cysteine desulfurase (NifS protein homolog) complement(980982..982097) Streptococcus pneumoniae JJA 7680490 YP_002736102.1 CDS SPJ_1032 NC_012466.1 982107 983066 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(982107..983066) Streptococcus pneumoniae JJA 7678779 YP_002736103.1 CDS SPJ_1033 NC_012466.1 983179 983748 R identified by match to protein family HMM PF01928; adenylate cyclase complement(983179..983748) Streptococcus pneumoniae JJA 7679455 YP_002736104.1 CDS SPJ_1034 NC_012466.1 983876 984547 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase 983876..984547 Streptococcus pneumoniae JJA 7679998 YP_002736105.1 CDS ppnK NC_012466.1 984531 985349 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 984531..985349 Streptococcus pneumoniae JJA 7679217 YP_002736106.1 CDS SPJ_1036 NC_012466.1 985346 986242 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase, RluD subfamily 985346..986242 Streptococcus pneumoniae JJA 7680316 YP_002736107.1 CDS eutD NC_012466.1 986286 987260 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 986286..987260 Streptococcus pneumoniae JJA 7678605 YP_002736108.1 CDS SPJ_1038 NC_012466.1 987521 987907 R transposase complement(987521..987907) Streptococcus pneumoniae JJA 7679037 YP_002736109.1 CDS SPJ_1039 NC_012466.1 988045 988332 R identified by match to protein family HMM PF01610; transposase complement(988045..988332) Streptococcus pneumoniae JJA 7679511 YP_002736110.1 CDS SPJ_1040 NC_012466.1 988329 988700 R transposase complement(988329..988700) Streptococcus pneumoniae JJA 7679698 YP_002736111.1 CDS SPJ_1041 NC_012466.1 989029 989328 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(989029..989328) Streptococcus pneumoniae JJA 7680173 YP_002736112.1 CDS SPJ_1042 NC_012466.1 989730 990434 D identified by match to protein family HMM PF06912; hypothetical protein 989730..990434 Streptococcus pneumoniae JJA 7680505 YP_002736113.1 CDS rplU NC_012466.1 990616 990930 D identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 990616..990930 Streptococcus pneumoniae JJA 7680064 YP_002736114.1 CDS SPJ_1044 NC_012466.1 990946 991290 D identified by match to protein family HMM PF04327; hypothetical protein 990946..991290 Streptococcus pneumoniae JJA 7680027 YP_002736115.1 CDS rpmA NC_012466.1 991307 991600 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 991307..991600 Streptococcus pneumoniae JJA 7680151 YP_002736116.1 CDS SPJ_1046 NC_012466.1 991946 992116 R identified by Glimmer3; putative; hypothetical protein complement(991946..992116) Streptococcus pneumoniae JJA 7679642 YP_002736117.1 CDS SPJ_1047 NC_012466.1 992088 992216 R hypothetical protein complement(992088..992216) Streptococcus pneumoniae JJA 7679465 YP_002736118.1 CDS ribF NC_012466.1 992553 993470 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 992553..993470 Streptococcus pneumoniae JJA 7678419 YP_002736119.1 CDS SPJ_1049 NC_012466.1 993563 994411 R identified by match to protein family HMM PF02588; hypothetical protein complement(993563..994411) Streptococcus pneumoniae JJA 7680304 YP_002736120.1 CDS SPJ_1050 NC_012466.1 994553 995392 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein 994553..995392 Streptococcus pneumoniae JJA 7679854 YP_002736121.1 CDS SPJ_1051 NC_012466.1 995499 995774 D identified by match to protein family HMM PF00216; DNA-binding protein HU 1 (DNA-binding protein II) (HB) 995499..995774 Streptococcus pneumoniae JJA 7678693 YP_002736122.1 CDS SPJ_1052 NC_012466.1 996204 998105 D identified by match to protein family HMM PF00005; ATPase component of ABC transporter with duplicated ATPase domains 996204..998105 Streptococcus pneumoniae JJA 7679329 YP_002736123.1 CDS SPJ_1053 NC_012466.1 998108 998971 D identified by match to protein family HMM TIGR01716; transcriptional regulator 998108..998971 Streptococcus pneumoniae JJA 7679556 YP_002736124.1 CDS SPJ_1054 NC_012466.1 999051 1000229 D identified by match to protein family HMM PF07690; macrolide ABC transporter permease 999051..1000229 Streptococcus pneumoniae JJA 7680441 YP_002736125.1 CDS ligA NC_012466.1 1000322 1002280 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1000322..1002280 Streptococcus pneumoniae JJA 7678955 YP_002736126.1 CDS pulA NC_012466.1 1002392 1004671 D identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104; pullulanase, type I 1002392..1004671 Streptococcus pneumoniae JJA 7678463 YP_002736127.1 CDS SPJ_1057 NC_012466.1 1005216 1006640 D identified by match to protein family HMM PF00171; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1005216..1006640 Streptococcus pneumoniae JJA 7679866 YP_002736128.1 CDS glgB NC_012466.1 1007123 1009051 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1007123..1009051 Streptococcus pneumoniae JJA 7679439 YP_002736129.1 CDS glgC NC_012466.1 1009041 1010183 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1009041..1010183 Streptococcus pneumoniae JJA 7679331 YP_002736130.1 CDS glgD NC_012466.1 1010173 1011312 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092; glucose-1-phosphate adenylyltransferase, GlgD subunit 1010173..1011312 Streptococcus pneumoniae JJA 7678862 YP_002736131.1 CDS glgA NC_012466.1 1011309 1012742 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1011309..1012742 Streptococcus pneumoniae JJA 7680299 YP_002736132.1 CDS SPJ_1065 NC_012466.1 1013455 1014258 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1013455..1014258 Streptococcus pneumoniae JJA 7679538 YP_002736133.1 CDS SPJ_1064 NC_012466.1 1014255 1014701 R identified by match to protein family HMM PF07997; hypothetical protein complement(1014255..1014701) Streptococcus pneumoniae JJA 7679392 YP_002736134.1 CDS eno NC_012466.1 1014865 1016169 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1014865..1016169 Streptococcus pneumoniae JJA 7678881 YP_002736135.1 CDS SPJ_1067 NC_012466.1 1016307 1016687 R identified by match to protein family HMM PF00589; integrase/recombinase, phage integrase family protein complement(1016307..1016687) Streptococcus pneumoniae JJA 7679771 YP_002736136.1 CDS SPJ_1068 NC_012466.1 1016653 1016835 R transposase complement(1016653..1016835) Streptococcus pneumoniae JJA 7679691 YP_002736137.1 CDS SPJ_1069 NC_012466.1 1017136 1017486 R identified by match to protein family HMM PF01710; transposase complement(1017136..1017486) Streptococcus pneumoniae JJA 7680279 YP_002736138.1 CDS rexB NC_012466.1 1018012 1021287 D identified by match to protein family HMM TIGR02774; ATP-dependent nuclease subunit B 1018012..1021287 Streptococcus pneumoniae JJA 7678421 YP_002736139.1 CDS addA NC_012466.1 1021284 1024934 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; recombination helicase AddA 1021284..1024934 Streptococcus pneumoniae JJA 7679029 YP_002736140.1 CDS SPJ_1072 NC_012466.1 1025149 1026327 D hypothetical protein 1025149..1026327 Streptococcus pneumoniae JJA 7680017 YP_002736141.1 CDS SPJ_1073 NC_012466.1 1026536 1033015 D identified by match to protein family HMM PF00089; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; IgA1 protease 1026536..1033015 Streptococcus pneumoniae JJA 7680391 YP_002736142.1 CDS zmpB3 NC_012466.1 1033059 1038272 D identified by match to protein family HMM PF00746; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167; zinc metalloprotease ZmpB 1033059..1038272 Streptococcus pneumoniae JJA 7678686 YP_002736143.1 CDS rbgA NC_012466.1 1038526 1039377 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1038526..1039377 Streptococcus pneumoniae JJA 7680433 YP_002736144.1 CDS rnhB NC_012466.1 1039364 1040143 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1039364..1040143 Streptococcus pneumoniae JJA 7679810 YP_002736145.1 CDS SPJ_1077 NC_012466.1 1040159 1041709 D identified by match to protein family HMM PF00654; match to protein family HMM PF02080; voltage-gated chloride channel family protein 1040159..1041709 Streptococcus pneumoniae JJA 7679187 YP_002736146.1 CDS xerS NC_012466.1 1042293 1043363 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1042293..1043363 Streptococcus pneumoniae JJA 7680402 YP_002736147.1 CDS SPJ_1079 NC_012466.1 1043436 1044425 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate protein ligase A complement(1043436..1044425) Streptococcus pneumoniae JJA 7678804 YP_002736148.1 CDS lpdA NC_012466.1 1044489 1046192 R identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoyl dehydrogenase complement(1044489..1046192) Streptococcus pneumoniae JJA 7679445 YP_002736149.1 CDS SPJ_1081 NC_012466.1 1046238 1047281 R unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain; dihydrolipoamide acetyltransferase complement(1046238..1047281) Streptococcus pneumoniae JJA 7680142 YP_002736150.1 CDS SPJ_1082 NC_012466.1 1047499 1048491 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component subunit beta complement(1047499..1048491) Streptococcus pneumoniae JJA 7678578 YP_002736151.1 CDS SPJ_1083 NC_012466.1 1048507 1049475 R identified by match to protein family HMM PF00676; pyruvate dehydrogenase E1 component subunit alpha complement(1048507..1049475) Streptococcus pneumoniae JJA 7679166 YP_002736152.1 CDS SPJ_1084 NC_012466.1 1049629 1050990 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(1049629..1050990) Streptococcus pneumoniae JJA 7679649 YP_002736153.1 CDS pyrC NC_012466.1 1051275 1052543 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1051275..1052543) Streptococcus pneumoniae JJA 7679116 YP_002736154.1 CDS SPJ_1086 NC_012466.1 1052556 1053020 R identified by match to protein family HMM PF00293; mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (8-oxo-dGTPase) (dGTP pyrophosphohydrolase) complement(1052556..1053020) Streptococcus pneumoniae JJA 7679478 YP_002736155.1 CDS ung NC_012466.1 1053030 1053683 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1053030..1053683) Streptococcus pneumoniae JJA 7680091 YP_002736156.1 CDS SPJ_1088 NC_012466.1 1053821 1054012 R identified by Glimmer3; putative; hypothetical protein complement(1053821..1054012) Streptococcus pneumoniae JJA 7678792 YP_002736157.1 CDS SPJ_1089 NC_012466.1 1054019 1054423 R identified by Glimmer3; putative; hypothetical protein complement(1054019..1054423) Streptococcus pneumoniae JJA 7679425 YP_002736158.1 CDS SPJ_1090 NC_012466.1 1054481 1055194 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD superfamily (subfamily IA) hydrolase complement(1054481..1055194) Streptococcus pneumoniae JJA 7679814 YP_002736159.1 CDS SPJ_1093 NC_012466.1 1056449 1059037 R identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363; pneumococcal histidine triad protein B complement(1056449..1059037) Streptococcus pneumoniae JJA 7680073 YP_002736160.1 CDS SPJ_1095 NC_012466.1 1059158 1059295 D identified by Glimmer3; putative; hypothetical protein 1059158..1059295 Streptococcus pneumoniae JJA 7679085 YP_002736161.1 CDS ptsP NC_012466.1 1059292 1061025 R identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(1059292..1061025) Streptococcus pneumoniae JJA 7678747 YP_002736162.1 CDS SPJ_1096 NC_012466.1 1061031 1061294 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(1061031..1061294) Streptococcus pneumoniae JJA 7680251 YP_002736163.1 CDS SPJ_1097 NC_012466.1 1061645 1061863 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin 1061645..1061863 Streptococcus pneumoniae JJA 7679222 YP_002736164.1 CDS SPJ_1098 NC_012466.1 1061944 1064103 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1061944..1064103 Streptococcus pneumoniae JJA 7680007 YP_002736165.1 CDS nrdF NC_012466.1 1064291 1065253 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1064291..1065253 Streptococcus pneumoniae JJA 7680143 YP_002736166.1 CDS SPJ_1100 NC_012466.1 1065541 1066302 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; lactose phosphotransferase system repressor 1065541..1066302 Streptococcus pneumoniae JJA 7680343 YP_002736167.1 CDS SPJ_1101 NC_012466.1 1066581 1066760 R identified by Glimmer3; putative; hypothetical protein complement(1066581..1066760) Streptococcus pneumoniae JJA 7679728 YP_002736168.1 CDS lacG NC_012466.1 1066883 1068289 R catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase complement(1066883..1068289) Streptococcus pneumoniae JJA 7679257 YP_002736169.1 CDS SPJ_1103 NC_012466.1 1068504 1070198 R identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system, lactose-specific IIC component complement(1068504..1070198) Streptococcus pneumoniae JJA 7678767 YP_002736170.1 CDS SPJ_1104 NC_012466.1 1070200 1070517 R identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823; lactose-specific phosphotransferase enzyme iia component (pts system lactose-specific eiia component) (eiia-lac) (eiii-lac) complement(1070200..1070517) Streptococcus pneumoniae JJA 7680174 YP_002736171.1 CDS SPJ_1105 NC_012466.1 1070553 1071389 R identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator LacT complement(1070553..1071389) Streptococcus pneumoniae JJA 7678468 YP_002736172.1 CDS lacD NC_012466.1 1071623 1072603 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(1071623..1072603) Streptococcus pneumoniae JJA 7678952 YP_002736173.1 CDS lacC NC_012466.1 1072605 1073534 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(1072605..1073534) Streptococcus pneumoniae JJA 7679693 YP_002736174.1 CDS lacB NC_012466.1 1073545 1074060 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(1073545..1074060) Streptococcus pneumoniae JJA 7678624 YP_002736175.1 CDS lacA NC_012466.1 1074091 1074516 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(1074091..1074516) Streptococcus pneumoniae JJA 7679099 YP_002736176.1 CDS SPJ_1110 NC_012466.1 1074673 1075017 R hypothetical protein complement(1074673..1075017) Streptococcus pneumoniae JJA 7679850 YP_002736177.1 CDS SPJ_1111 NC_012466.1 1075186 1075584 R mobile genetic element complement(1075186..1075584) Streptococcus pneumoniae JJA 7680327 YP_002736178.1 CDS SPJ_1112 NC_012466.1 1075515 1075805 R mobile genetic element complement(1075515..1075805) Streptococcus pneumoniae JJA 7679278 YP_002736179.1 CDS SPJ_1113 NC_012466.1 1075805 1075987 R mobile genetic element complement(1075805..1075987) Streptococcus pneumoniae JJA 7679967 YP_002736180.1 CDS SPJ_1114 NC_012466.1 1075995 1076297 R PTS system, galactose-specific IIB component complement(1075995..1076297) Streptococcus pneumoniae JJA 7679602 YP_002736181.1 CDS SPJ_1115 NC_012466.1 1076335 1076607 R phosphotransferase system sugar-specific EII component complement(1076335..1076607) Streptococcus pneumoniae JJA 7680257 YP_002736182.1 CDS SPJ_1116 NC_012466.1 1076607 1076723 R phosphotransferase system sugar-specific EII component complement(1076607..1076723) Streptococcus pneumoniae JJA 7678545 YP_002736183.1 CDS SPJ_1117 NC_012466.1 1076990 1077277 D chlorohydrolase 1076990..1077277 Streptococcus pneumoniae JJA 7678974 YP_002736184.1 CDS lepA NC_012466.1 1077358 1079181 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1077358..1079181) Streptococcus pneumoniae JJA 7679751 YP_002736185.1 CDS SPJ_1119 NC_012466.1 1079260 1079988 R identified by match to protein family HMM PF00149; serine/threonine protein phosphatase complement(1079260..1079988) Streptococcus pneumoniae JJA 7678883 YP_002736186.1 CDS recN NC_012466.1 1079990 1081657 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(1079990..1081657) Streptococcus pneumoniae JJA 7679377 YP_002736187.1 CDS SPJ_1121 NC_012466.1 1081664 1082095 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; transcriptional regulator of arginine metabolism expression complement(1081664..1082095) Streptococcus pneumoniae JJA 7680324 YP_002736188.1 CDS tylA NC_012466.1 1082088 1082903 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(1082088..1082903) Streptococcus pneumoniae JJA 7679838 YP_002736189.1 CDS SPJ_1123 NC_012466.1 1082896 1083771 R identified by match to protein family HMM PF00348; geranyltranstransferase (Farnesyl-diphosphate synthase)(FPP synthase) complement(1082896..1083771) Streptococcus pneumoniae JJA 7679682 YP_002736190.1 CDS xseB NC_012466.1 1083768 1083980 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1083768..1083980) Streptococcus pneumoniae JJA 7679159 YP_002736191.1 CDS xseA NC_012466.1 1083958 1085298 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1083958..1085298) Streptococcus pneumoniae JJA 7679379 YP_002736192.1 CDS udk NC_012466.1 1085426 1086064 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1085426..1086064) Streptococcus pneumoniae JJA 7678869 YP_002736193.1 CDS SPJ_1127 NC_012466.1 1086172 1086474 R hypothetical protein complement(1086172..1086474) Streptococcus pneumoniae JJA 7680061 YP_002736194.1 CDS truB NC_012466.1 1086715 1087593 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1086715..1087593) Streptococcus pneumoniae JJA 7679598 YP_002736195.1 CDS SPJ_1129 NC_012466.1 1087603 1088877 R hypothetical protein complement(1087603..1088877) Streptococcus pneumoniae JJA 7679750 YP_002736196.1 CDS SPJ_1132 NC_012466.1 1090380 1091177 R identified by match to protein family HMM PF01226; formate-nitrate transporter complement(1090380..1091177) Streptococcus pneumoniae JJA 7678778 YP_002736197.1 CDS SPJ_1133 NC_012466.1 1091421 1092164 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(1091421..1092164) Streptococcus pneumoniae JJA 7679430 YP_002736198.1 CDS gyrA NC_012466.1 1092164 1094632 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1092164..1094632) Streptococcus pneumoniae JJA 7680153 YP_002736199.1 CDS ldh NC_012466.1 1094826 1095812 D Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 1094826..1095812 Streptococcus pneumoniae JJA 7679764 YP_002736200.1 CDS SPJ_1136 NC_012466.1 1096161 1096856 R identified by match to protein family HMM PF00520; match to protein family HMM PF07885; potassium/ion channel protein complement(1096161..1096856) Streptococcus pneumoniae JJA 7679314 YP_002736201.1 CDS SPJ_1137 NC_012466.1 1096903 1097157 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; cytotoxic translational repressor of toxin-antitoxin stability system complement(1096903..1097157) Streptococcus pneumoniae JJA 7679075 YP_002736202.1 CDS SPJ_1138 NC_012466.1 1097159 1097401 R hypothetical protein complement(1097159..1097401) Streptococcus pneumoniae JJA 7678653 YP_002736203.1 CDS SPJ_1139 NC_012466.1 1097492 1098301 R identified by match to protein family HMM PF00753; VicX protein complement(1097492..1098301) Streptococcus pneumoniae JJA 7680110 YP_002736204.1 CDS SPJ_1140 NC_012466.1 1098303 1099652 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensor protein YycG complement(1098303..1099652) Streptococcus pneumoniae JJA 7679554 YP_002736205.1 CDS SPJ_1141 NC_012466.1 1099645 1100349 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP complement(1099645..1100349) Streptococcus pneumoniae JJA 7679338 YP_002736206.1 CDS mutY NC_012466.1 1100404 1101579 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1100404..1101579) Streptococcus pneumoniae JJA 7678723 YP_002736207.1 CDS fhs NC_012466.1 1101907 1103577 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1101907..1103577) Streptococcus pneumoniae JJA 7680473 YP_002736208.1 CDS coaB NC_012466.1 1103807 1104496 D identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114; phosphopantothenate--cysteine ligase 1103807..1104496 Streptococcus pneumoniae JJA 7680028 YP_002736209.1 CDS coaC NC_012466.1 1104508 1105059 D decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.; phosphopantothenoylcysteine decarboxylase 1104508..1105059 Streptococcus pneumoniae JJA 7680200 YP_002736210.1 CDS SPJ_1146 NC_012466.1 1105043 1105606 D integral membrane protein 1105043..1105606 Streptococcus pneumoniae JJA 7678540 YP_002736211.1 CDS SPJ_1147 NC_012466.1 1105884 1106411 D hypothetical protein 1105884..1106411 Streptococcus pneumoniae JJA 7679177 YP_002736212.1 CDS SPJ_1149 NC_012466.1 1106423 1106938 D identified by match to protein family HMM PF02829; match to protein family HMM PF08279; transcriptional regulator, biotin repressor family 1106423..1106938 Streptococcus pneumoniae JJA 7679882 YP_002736213.1 CDS SPJ_1148 NC_012466.1 1106935 1107402 R identified by match to protein family HMM PF00293; NTP pyrophosphohydrolase including oxidative damage repair enzymes complement(1106935..1107402) Streptococcus pneumoniae JJA 7679643 YP_002736214.1 CDS SPJ_1150 NC_012466.1 1107476 1107964 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1107476..1107964) Streptococcus pneumoniae JJA 7679052 YP_002736215.1 CDS SPJ_1151 NC_012466.1 1107930 1108493 R acetyltransferase, gnat family complement(1107930..1108493) Streptococcus pneumoniae JJA 7679847 YP_002736216.1 CDS uvrB NC_012466.1 1108503 1110491 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1108503..1110491) Streptococcus pneumoniae JJA 7680353 YP_002736217.1 CDS SPJ_1153 NC_012466.1 1110568 1111521 R identified by match to protein family HMM PF02517; caax amino protease family complement(1110568..1111521) Streptococcus pneumoniae JJA 7679215 YP_002736218.1 CDS SPJ_1154 NC_012466.1 1111694 1113859 D identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease/substrate-binding protein 1111694..1113859 Streptococcus pneumoniae JJA 7679931 YP_002736219.1 CDS SPJ_1155 NC_012466.1 1113859 1114599 D identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ 1113859..1114599 Streptococcus pneumoniae JJA 7679876 YP_002736220.1 CDS zwf NC_012466.1 1114748 1116235 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1114748..1116235 Streptococcus pneumoniae JJA 7680358 YP_002736221.1 CDS SPJ_1157 NC_012466.1 1116281 1117558 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cell division protein FtsY complement(1116281..1117558) Streptococcus pneumoniae JJA 7678585 YP_002736222.1 CDS SPJ_1158 NC_012466.1 1117562 1118380 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(1117562..1118380) Streptococcus pneumoniae JJA 7679129 YP_002736223.1 CDS SPJ_1159 NC_012466.1 1118380 1119174 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(1118380..1119174) Streptococcus pneumoniae JJA 7679624 YP_002736224.1 CDS smc NC_012466.1 1119171 1122710 R identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC complement(1119171..1122710) Streptococcus pneumoniae JJA 7680111 YP_002736225.1 CDS rnc NC_012466.1 1122701 1123399 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1122701..1123399) Streptococcus pneumoniae JJA 7678593 YP_002736226.1 CDS guaC NC_012466.1 1123717 1124703 R identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase complement(1123717..1124703) Streptococcus pneumoniae JJA 7680582 YP_002736227.1 CDS SPJ_1164 NC_012466.1 1124879 1126195 R hypothetical protein complement(1124879..1126195) Streptococcus pneumoniae JJA 7679618 YP_002736228.1 CDS SPJ_1165 NC_012466.1 1126182 1128113 R hypothetical protein complement(1126182..1128113) Streptococcus pneumoniae JJA 7680057 YP_002736229.1 CDS SPJ_1166 NC_012466.1 1128279 1128440 R identified by Glimmer3; putative; hypothetical protein complement(1128279..1128440) Streptococcus pneumoniae JJA 7680488 YP_002736230.1 CDS SPJ_1167 NC_012466.1 1128430 1128696 R identified by Glimmer3; putative; hypothetical protein complement(1128430..1128696) Streptococcus pneumoniae JJA 7678905 YP_002736231.1 CDS SPJ_1168 NC_012466.1 1128702 1128845 R identified by Glimmer3; putative; hypothetical protein complement(1128702..1128845) Streptococcus pneumoniae JJA 7679265 YP_002736232.1 CDS SPJ_1169 NC_012466.1 1129064 1129423 R hypothetical protein complement(1129064..1129423) Streptococcus pneumoniae JJA 7679868 YP_002736233.1 CDS SPJ_1170 NC_012466.1 1129427 1129696 R identified by match to protein family HMM PF06961; hypothetical protein complement(1129427..1129696) Streptococcus pneumoniae JJA 7679057 YP_002736234.1 CDS leuB NC_012466.1 1129693 1130730 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1129693..1130730) Streptococcus pneumoniae JJA 7679517 YP_002736235.1 CDS SPJ_1174 NC_012466.1 1131855 1132511 R identified by match to protein family HMM PF04237; hypothetical protein complement(1131855..1132511) Streptococcus pneumoniae JJA 7678611 YP_002736236.1 CDS SPJ_1175 NC_012466.1 1132555 1133187 R identified by match to protein family HMM PF03932; copper sensitivity complement(1132555..1133187) Streptococcus pneumoniae JJA 7679212 YP_002736237.1 CDS SPJ_1176 NC_012466.1 1133280 1133639 R identified by match to protein family HMM PF04304; hypothetical protein complement(1133280..1133639) Streptococcus pneumoniae JJA 7680533 YP_002736238.1 CDS topA NC_012466.1 1133745 1135832 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1133745..1135832) Streptococcus pneumoniae JJA 7679919 YP_002736239.1 CDS SPJ_1178 NC_012466.1 1135999 1137042 R identified by match to protein family HMM PF04087; hypothetical protein complement(1135999..1137042) Streptococcus pneumoniae JJA 7679889 YP_002736240.1 CDS SPJ_1179 NC_012466.1 1137625 1137747 D chlorohydrolase 1137625..1137747 Streptococcus pneumoniae JJA 7679251 YP_002736241.1 CDS dprA NC_012466.1 1137931 1138779 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(1137931..1138779) Streptococcus pneumoniae JJA 7678787 YP_002736242.1 CDS SPJ_1181 NC_012466.1 1138875 1139564 R identified by match to protein family HMM PF00483; LicC protein complement(1138875..1139564) Streptococcus pneumoniae JJA 7679686 YP_002736243.1 CDS SPJ_1182 NC_012466.1 1139576 1140454 R identified by match to protein family HMM PF00892; LPS epitope expression regulatory protein complement(1139576..1140454) Streptococcus pneumoniae JJA 7678519 YP_002736244.1 CDS SPJ_1183 NC_012466.1 1140444 1141313 R identified by match to protein family HMM PF01633; match to protein family HMM PF01636; choline kinase complement(1140444..1141313) Streptococcus pneumoniae JJA 7680084 YP_002736245.1 CDS SPJ_1184 NC_012466.1 1141330 1142352 R identified by match to protein family HMM PF08240; xylitol dehydrogenase complement(1141330..1142352) Streptococcus pneumoniae JJA 7679941 YP_002736246.1 CDS ispD NC_012466.1 1142357 1143064 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1142357..1143064) Streptococcus pneumoniae JJA 7679302 YP_002736247.1 CDS SPJ_1186 NC_012466.1 1143400 1144887 D identified by match to protein family HMM PF01943; match to protein family HMM PF03023; virulence factor mvin superfamily 1143400..1144887 Streptococcus pneumoniae JJA 7679987 YP_002736248.1 CDS SPJ_1187 NC_012466.1 1144897 1145700 D required for phosphorylcholine incorporation in teichoic and lipoteichoic acids; identified by match to protein family HMM PF04991; phosphotransferase 1144897..1145700 Streptococcus pneumoniae JJA 7679841 YP_002736249.1 CDS SPJ_1188 NC_012466.1 1145702 1146511 D identified by match to protein family HMM PF04991; LicD Protein 1145702..1146511 Streptococcus pneumoniae JJA 7679228 YP_002736250.1 CDS carB NC_012466.1 1146786 1149962 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1146786..1149962) Streptococcus pneumoniae JJA 7680244 YP_002736251.1 CDS carA NC_012466.1 1150274 1151353 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1150274..1151353) Streptococcus pneumoniae JJA 7680431 YP_002736252.1 CDS pyrB NC_012466.1 1151403 1152326 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(1151403..1152326) Streptococcus pneumoniae JJA 7680114 YP_002736253.1 CDS SPJ_1192 NC_012466.1 1152345 1152866 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1152345..1152866) Streptococcus pneumoniae JJA 7678646 YP_002736254.1 CDS nth NC_012466.1 1153077 1153706 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1153077..1153706) Streptococcus pneumoniae JJA 7679160 YP_002736255.1 CDS SPJ_1194 NC_012466.1 1153706 1154248 R identified by match to protein family HMM PF02620; hypothetical protein complement(1153706..1154248) Streptococcus pneumoniae JJA 7679901 YP_002736256.1 CDS SPJ_1195 NC_012466.1 1154417 1154557 D identified by Glimmer3; putative; hypothetical protein 1154417..1154557 Streptococcus pneumoniae JJA 7680350 YP_002736257.1 CDS SPJ_1196 NC_012466.1 1154982 1155935 D identified by match to protein family HMM PF00665; transposase 1154982..1155935 Streptococcus pneumoniae JJA 7679334 YP_002736258.1 CDS SPJ_1197 NC_012466.1 1156217 1157776 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1156217..1157776 Streptococcus pneumoniae JJA 7679821 YP_002736259.1 CDS SPJ_1198 NC_012466.1 1157925 1158824 R putative metalloprotease; heat shock protein HtpX complement(1157925..1158824) Streptococcus pneumoniae JJA 7680160 YP_002736260.1 CDS SPJ_1199 NC_012466.1 1158826 1159386 R identified by match to protein family HMM PF04011; cytoplasmic membrane protein complement(1158826..1159386) Streptococcus pneumoniae JJA 7678856 YP_002736261.1 CDS gidB NC_012466.1 1159480 1160193 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1159480..1160193 Streptococcus pneumoniae JJA 7679201 YP_002736262.1 CDS SPJ_1201 NC_012466.1 1160545 1161828 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease (Uracil transporter) 1160545..1161828 Streptococcus pneumoniae JJA 7679543 YP_002736263.1 CDS ffh NC_012466.1 1162023 1163594 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(1162023..1163594) Streptococcus pneumoniae JJA 7679066 YP_002736264.1 CDS SPJ_1203 NC_012466.1 1163606 1163938 R identified by match to protein family HMM PF04297; match to protein family HMM PF04967; match to protein family HMM PF08281; putative DNA-binding protein complement(1163606..1163938) Streptococcus pneumoniae JJA 7679581 YP_002736265.1 CDS SPJ_1204 NC_012466.1 1164029 1164406 R identified by match to protein family HMM PF09148; hypothetical protein complement(1164029..1164406) Streptococcus pneumoniae JJA 7679782 YP_002736266.1 CDS SPJ_1205 NC_012466.1 1164382 1165782 D identified by match to protein family HMM PF01966; dGTP triphosphohydrolase 1164382..1165782 Streptococcus pneumoniae JJA 7678608 YP_002736267.1 CDS SPJ_1206 NC_012466.1 1165795 1166601 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YidA 1165795..1166601 Streptococcus pneumoniae JJA 7678649 YP_002736268.1 CDS SPJ_1207 NC_012466.1 1166644 1167642 D identified by match to protein family HMM PF02037; SAP domain protein 1166644..1167642 Streptococcus pneumoniae JJA 7679152 YP_002736269.1 CDS rplS NC_012466.1 1167921 1168268 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1167921..1168268) Streptococcus pneumoniae JJA 7680578 YP_002736270.1 CDS SPJ_1210 NC_012466.1 1168387 1168716 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1168387..1168716) Streptococcus pneumoniae JJA 7680234 YP_002736271.1 CDS SPJ_1211 NC_012466.1 1168710 1169084 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(1168710..1169084) Streptococcus pneumoniae JJA 7679043 YP_002736272.1 CDS SPJ_1212 NC_012466.1 1169081 1169347 R identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805; hypothetical protein complement(1169081..1169347) Streptococcus pneumoniae JJA 7679683 YP_002736273.1 CDS SPJ_1213 NC_012466.1 1169463 1169906 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(1169463..1169906) Streptococcus pneumoniae JJA 7680543 YP_002736274.1 CDS SPJ_1214 NC_012466.1 1170010 1170945 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein 1170010..1170945 Streptococcus pneumoniae JJA 7678422 YP_002736275.1 CDS rpmE2 NC_012466.1 1171041 1171283 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 1171041..1171283 Streptococcus pneumoniae JJA 7678791 YP_002736276.1 CDS SPJ_1216 NC_012466.1 1171340 1171558 R high-affinity Fe2+/Pb2+ permease complement(1171340..1171558) Streptococcus pneumoniae JJA 7679419 YP_002736277.1 CDS SPJ_1217 NC_012466.1 1171555 1171716 R hypothetical protein complement(1171555..1171716) Streptococcus pneumoniae JJA 7679120 YP_002736278.1 CDS SPJ_1218 NC_012466.1 1171866 1172117 R transposase complement(1171866..1172117) Streptococcus pneumoniae JJA 7679697 YP_002736279.1 CDS SPJ_1219 NC_012466.1 1172643 1173989 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1172643..1173989 Streptococcus pneumoniae JJA 7678602 YP_002736280.1 CDS SPJ_1220 NC_012466.1 1174495 1174665 R hypothetical protein complement(1174495..1174665) Streptococcus pneumoniae JJA 7678776 YP_002736281.1 CDS SPJ_1221 NC_012466.1 1174678 1175124 R identified by match to protein family HMM PF00005; multidrug resistance protein 1 (ATP-binding cassettesub-family B member 1) (P-glycoprotein 1) (antigen) complement(1174678..1175124) Streptococcus pneumoniae JJA 7679276 YP_002736282.1 CDS SPJ_1222 NC_012466.1 1175314 1175661 R mobile genetic element complement(1175314..1175661) Streptococcus pneumoniae JJA 7680038 YP_002736283.1 CDS SPJ_1223 NC_012466.1 1175678 1175800 R transposase protein A complement(1175678..1175800) Streptococcus pneumoniae JJA 7678724 YP_002736284.1 CDS SPJ_1224 NC_012466.1 1175895 1176077 R mobile genetic element complement(1175895..1176077) Streptococcus pneumoniae JJA 7679316 YP_002736285.1 CDS SPJ_1225 NC_012466.1 1176170 1176328 R transposase complement(1176170..1176328) Streptococcus pneumoniae JJA 7679666 YP_002736286.1 CDS SPJ_1226 NC_012466.1 1176591 1176761 R transposase complement(1176591..1176761) Streptococcus pneumoniae JJA 7680225 YP_002736287.1 CDS SPJ_1227 NC_012466.1 1176923 1177363 R transposase complement(1176923..1177363) Streptococcus pneumoniae JJA 7679147 YP_002736288.1 CDS SPJ_1228 NC_012466.1 1177396 1177548 D transposase family protein 1177396..1177548 Streptococcus pneumoniae JJA 7680309 YP_002736289.1 CDS SPJ_1229 NC_012466.1 1177817 1178140 R identified by match to protein family HMM PF05717; transposase complement(1177817..1178140) Streptococcus pneumoniae JJA 7679596 YP_002736290.1 CDS SPJ_1230 NC_012466.1 1178121 1178306 R hypothetical protein complement(1178121..1178306) Streptococcus pneumoniae JJA 7679086 YP_002736291.1 CDS SPJ_1231 NC_012466.1 1178579 1179190 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(1178579..1179190) Streptococcus pneumoniae JJA 7678893 YP_002736292.1 CDS SPJ_1232 NC_012466.1 1179213 1180598 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(1179213..1180598) Streptococcus pneumoniae JJA 7680087 YP_002736293.1 CDS SPJ_1233 NC_012466.1 1180599 1182374 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(1180599..1182374) Streptococcus pneumoniae JJA 7679411 YP_002736294.1 CDS SPJ_1234 NC_012466.1 1182437 1182757 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(1182437..1182757) Streptococcus pneumoniae JJA 7678906 YP_002736295.1 CDS SPJ_1235 NC_012466.1 1182747 1183754 R identified by match to protein family HMM PF01992; ATP synthase (C/AC39) subunit complement(1182747..1183754) Streptococcus pneumoniae JJA 7678599 YP_002736296.1 CDS SPJ_1236 NC_012466.1 1183819 1184400 R V-type sodium ATP synthase, subunit E complement(1183819..1184400) Streptococcus pneumoniae JJA 7679895 YP_002736297.1 CDS SPJ_1237 NC_012466.1 1184434 1184910 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(1184434..1184910) Streptococcus pneumoniae JJA 7679713 YP_002736298.1 CDS SPJ_1238 NC_012466.1 1184926 1186917 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(1184926..1186917) Streptococcus pneumoniae JJA 7679211 YP_002736299.1 CDS SPJ_1239 NC_012466.1 1186907 1187230 R hypothetical protein complement(1186907..1187230) Streptococcus pneumoniae JJA 7680199 YP_002736300.1 CDS SPJ_1240 NC_012466.1 1187255 1188145 R identified by match to protein family HMM PF00480; ROK family protein complement(1187255..1188145) Streptococcus pneumoniae JJA 7679734 YP_002736301.1 CDS SPJ_1241 NC_012466.1 1188302 1189411 R identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; putative oxidoreductase YjhC complement(1188302..1189411) Streptococcus pneumoniae JJA 7680002 YP_002736302.1 CDS SPJ_1242 NC_012466.1 1189451 1191673 R identified by match to protein family HMM PF02012; match to protein family HMM PF02973; sialidase B (Neuraminidase B) complement(1189451..1191673) Streptococcus pneumoniae JJA 7678473 YP_002736303.1 CDS SPJ_1243 NC_012466.1 1191675 1192133 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(1191675..1192133) Streptococcus pneumoniae JJA 7680472 YP_002736304.1 CDS SPJ_1244 NC_012466.1 1192152 1193693 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute symporter family protein complement(1192152..1193693) Streptococcus pneumoniae JJA 7679813 YP_002736305.1 CDS SPJ_1245 NC_012466.1 1193721 1194638 R identified by match to protein family HMM PF00701; N-acetylneuraminate lyase complement(1193721..1194638) Streptococcus pneumoniae JJA 7679510 YP_002736306.1 CDS SPJ_1246 NC_012466.1 1194663 1195364 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1194663..1195364) Streptococcus pneumoniae JJA 7678888 YP_002736307.1 CDS SPJ_1247 NC_012466.1 1195369 1196178 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator, RpiR family complement(1195369..1196178) Streptococcus pneumoniae JJA 7678775 YP_002736308.1 CDS SPJ_1248 NC_012466.1 1196577 1197164 R identified by match to protein family HMM PF02517; caax amino protease family complement(1196577..1197164) Streptococcus pneumoniae JJA 7679267 YP_002736309.1 CDS SPJ_1249 NC_012466.1 1197257 1197376 R identified by Glimmer3; putative; hypothetical protein complement(1197257..1197376) Streptococcus pneumoniae JJA 7678786 YP_002736310.1 CDS SPJ_1250 NC_012466.1 1197413 1197793 R hypothetical protein complement(1197413..1197793) Streptococcus pneumoniae JJA 7680467 YP_002736311.1 CDS SPJ_1251 NC_012466.1 1197786 1198037 R hypothetical protein complement(1197786..1198037) Streptococcus pneumoniae JJA 7679984 YP_002736312.1 CDS SPJ_1252 NC_012466.1 1198117 1198371 R identified by match to protein family HMM PF06970; replication intiation protein complement(1198117..1198371) Streptococcus pneumoniae JJA 7679060 YP_002736313.1 CDS SPJ_1253 NC_012466.1 1198371 1198541 R hypothetical protein complement(1198371..1198541) Streptococcus pneumoniae JJA 7678455 YP_002736314.1 CDS rplL NC_012466.1 1198728 1199096 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1198728..1199096) Streptococcus pneumoniae JJA 7680172 YP_002736315.1 CDS rplJ NC_012466.1 1199172 1199672 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1199172..1199672) Streptococcus pneumoniae JJA 7679662 YP_002736316.1 CDS SPJ_1256 NC_012466.1 1199922 1201433 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; chlorohydrolase complement(1199922..1201433) Streptococcus pneumoniae JJA 7678444 YP_002736317.1 CDS SPJ_1257 NC_012466.1 1201528 1203276 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1201528..1203276) Streptococcus pneumoniae JJA 7678923 YP_002736318.1 CDS SPJ_1258 NC_012466.1 1203278 1205002 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1203278..1205002) Streptococcus pneumoniae JJA 7680482 YP_002736319.1 CDS SPJ_1259 NC_012466.1 1205060 1205998 R identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA/msrB complement(1205060..1205998) Streptococcus pneumoniae JJA 7679609 YP_002736320.1 CDS thrB NC_012466.1 1206428 1207297 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1206428..1207297) Streptococcus pneumoniae JJA 7678990 YP_002736321.1 CDS SPJ_1261 NC_012466.1 1207299 1208585 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1207299..1208585) Streptococcus pneumoniae JJA 7678628 YP_002736322.1 CDS SPJ_1262 NC_012466.1 1208736 1209473 R enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein complement(1208736..1209473) Streptococcus pneumoniae JJA 7679993 YP_002736323.1 CDS SPJ_1263 NC_012466.1 1209673 1210707 R hypothetical protein complement(1209673..1210707) Streptococcus pneumoniae JJA 7679246 YP_002736324.1 CDS SPJ_1264 NC_012466.1 1210736 1212169 R hypothetical protein complement(1210736..1212169) Streptococcus pneumoniae JJA 7679595 YP_002736325.1 CDS SPJ_1265 NC_012466.1 1212185 1213171 R identified by match to protein family HMM PF00535; glycosyl transferase, family 2 complement(1212185..1213171) Streptococcus pneumoniae JJA 7679118 YP_002736326.1 CDS SPJ_1266 NC_012466.1 1213173 1214273 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 complement(1213173..1214273) Streptococcus pneumoniae JJA 7678666 YP_002736327.1 CDS SPJ_1267 NC_012466.1 1214266 1215111 R identified by match to protein family HMM PF04991; licD3 protein complement(1214266..1215111) Streptococcus pneumoniae JJA 7679007 YP_002736328.1 CDS SPJ_1268 NC_012466.1 1215390 1216664 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator, LytR family complement(1215390..1216664) Streptococcus pneumoniae JJA 7678788 YP_002736329.1 CDS SPJ_1269 NC_012466.1 1216661 1217509 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(1216661..1217509) Streptococcus pneumoniae JJA 7679244 YP_002736330.1 CDS aroK NC_012466.1 1217506 1217982 R identified by match to protein family HMM PF01202; shikimate kinase complement(1217506..1217982) Streptococcus pneumoniae JJA 7680031 YP_002736331.1 CDS aroA NC_012466.1 1217975 1219258 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1217975..1219258) Streptococcus pneumoniae JJA 7680478 YP_002736332.1 CDS SPJ_1272 NC_012466.1 1219350 1219688 R identified by match to protein family HMM PF06133; hypothetical protein complement(1219350..1219688) Streptococcus pneumoniae JJA 7678979 YP_002736333.1 CDS SPJ_1273 NC_012466.1 1219699 1220802 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1219699..1220802) Streptococcus pneumoniae JJA 7679521 YP_002736334.1 CDS aroC NC_012466.1 1220812 1221978 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1220812..1221978) Streptococcus pneumoniae JJA 7680148 YP_002736335.1 CDS aroB NC_012466.1 1221988 1223055 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1221988..1223055) Streptococcus pneumoniae JJA 7678575 YP_002736336.1 CDS aroE NC_012466.1 1223074 1223928 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1223074..1223928) Streptococcus pneumoniae JJA 7678509 YP_002736337.1 CDS aroD NC_012466.1 1223918 1224595 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1223918..1224595) Streptococcus pneumoniae JJA 7680269 YP_002736338.1 CDS SPJ_1278 NC_012466.1 1224592 1225755 R methyltransferase complement(1224592..1225755) Streptococcus pneumoniae JJA 7678910 YP_002736339.1 CDS SPJ_1279 NC_012466.1 1226440 1228074 R hypothetical protein complement(1226440..1228074) Streptococcus pneumoniae JJA 7679386 YP_002736340.1 CDS SPJ_1280 NC_012466.1 1228055 1228804 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1228055..1228804) Streptococcus pneumoniae JJA 7679171 YP_002736341.1 CDS SPJ_1281 NC_012466.1 1228983 1230437 D converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 1228983..1230437 Streptococcus pneumoniae JJA 7679528 YP_002736342.1 CDS alaS NC_012466.1 1230527 1233145 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1230527..1233145) Streptococcus pneumoniae JJA 7678729 YP_002736343.1 CDS SPJ_1283 NC_012466.1 1233167 1233652 R identified by match to protein family HMM PF04525; hypothetical protein complement(1233167..1233652) Streptococcus pneumoniae JJA 7678549 YP_002736344.1 CDS SPJ_1284 NC_012466.1 1233927 1234166 R hypothetical protein complement(1233927..1234166) Streptococcus pneumoniae JJA 7679406 YP_002736345.1 CDS SPJ_1285 NC_012466.1 1234427 1235497 R identified by match to protein family HMM PF01547; spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein complement(1234427..1235497) Streptococcus pneumoniae JJA 7678892 YP_002736346.1 CDS SPJ_1286 NC_012466.1 1235494 1236267 R identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease complement(1235494..1236267) Streptococcus pneumoniae JJA 7678594 YP_002736347.1 CDS SPJ_1287 NC_012466.1 1236264 1237070 R identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease complement(1236264..1237070) Streptococcus pneumoniae JJA 7679452 YP_002736348.1 CDS SPJ_1288 NC_012466.1 1237051 1238208 R identified by match to protein family HMM PF00005; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA complement(1237051..1238208) Streptococcus pneumoniae JJA 7680115 YP_002736349.1 CDS murB NC_012466.1 1238368 1239273 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1238368..1239273) Streptococcus pneumoniae JJA 7678658 YP_002736350.1 CDS SPJ_1290 NC_012466.1 1239385 1240137 R hypothetical protein complement(1239385..1240137) Streptococcus pneumoniae JJA 7679809 YP_002736351.1 CDS budA NC_012466.1 1240147 1240878 R identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(1240147..1240878) Streptococcus pneumoniae JJA 7680338 YP_002736352.1 CDS SPJ_1292 NC_012466.1 1241020 1242291 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1241020..1242291 Streptococcus pneumoniae JJA 7680444 YP_002736353.1 CDS SPJ_1293 NC_012466.1 1242311 1242997 R identified by match to protein family HMM PF00497; ABC transporter substrate-binding protein - glutamine-binding protein complement(1242311..1242997) Streptococcus pneumoniae JJA 7678709 YP_002736354.1 CDS phoU1 NC_012466.1 1243294 1243947 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(1243294..1243947) Streptococcus pneumoniae JJA 7678938 YP_002736355.1 CDS pstB1 NC_012466.1 1243959 1244717 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1243959..1244717) Streptococcus pneumoniae JJA 7679559 YP_002736356.1 CDS pstB2 NC_012466.1 1244730 1245533 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1244730..1245533) Streptococcus pneumoniae JJA 7679243 YP_002736357.1 CDS pstA1 NC_012466.1 1245544 1246428 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(1245544..1246428) Streptococcus pneumoniae JJA 7680281 YP_002736358.1 CDS pstC1 NC_012466.1 1246418 1247335 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(1246418..1247335) Streptococcus pneumoniae JJA 7678687 YP_002736359.1 CDS SPJ_1299 NC_012466.1 1247335 1248213 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate-binding protein PstS 1 (PBP 1) complement(1247335..1248213) Streptococcus pneumoniae JJA 7679306 YP_002736360.1 CDS SPJ_1300 NC_012466.1 1248443 1248556 D hypothetical protein 1248443..1248556 Streptococcus pneumoniae JJA 7679341 YP_002736361.1 CDS SPJ_1301 NC_012466.1 1248787 1250091 R identified by match to protein family HMM PF01189; NOL1/NOP2/sun family protein complement(1248787..1250091) Streptococcus pneumoniae JJA 7680232 YP_002736362.1 CDS SPJ_1302 NC_012466.1 1250092 1250865 R identified by match to protein family HMM PF00459; inositol monophosphatase family protein complement(1250092..1250865) Streptococcus pneumoniae JJA 7678389 YP_002736363.1 CDS SPJ_1303 NC_012466.1 1250855 1251133 R identified by match to protein family HMM PF05256; hypothetical protein complement(1250855..1251133) Streptococcus pneumoniae JJA 7678998 YP_002736364.1 CDS spxA NC_012466.1 1251133 1251534 R the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx complement(1251133..1251534) Streptococcus pneumoniae JJA 7679874 YP_002736365.1 CDS SPJ_1305 NC_012466.1 1251744 1252361 R identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; integral membrane protein complement(1251744..1252361) Streptococcus pneumoniae JJA 7680463 YP_002736366.1 CDS SPJ_1306 NC_012466.1 1252351 1253124 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD-superfamily subfamily IIA hydrolase complement(1252351..1253124) Streptococcus pneumoniae JJA 7678840 YP_002736367.1 CDS SPJ_1307 NC_012466.1 1253135 1253872 R identified by match to protein family HMM PF01643; acyl-ACP thioesterase complement(1253135..1253872) Streptococcus pneumoniae JJA 7679109 YP_002736368.1 CDS SPJ_1308 NC_012466.1 1253877 1255007 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1253877..1255007) Streptococcus pneumoniae JJA 7678588 YP_002736369.1 CDS SPJ_1309 NC_012466.1 1255091 1255480 R hypothetical protein complement(1255091..1255480) Streptococcus pneumoniae JJA 7679178 YP_002736370.1 CDS SPJ_1310 NC_012466.1 1255496 1255879 R identified by match to protein family HMM PF06103; hypothetical protein complement(1255496..1255879) Streptococcus pneumoniae JJA 7679766 YP_002736371.1 CDS lgt NC_012466.1 1255880 1256668 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1255880..1256668) Streptococcus pneumoniae JJA 7680397 YP_002736372.1 CDS hprK NC_012466.1 1256661 1257596 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(1256661..1257596) Streptococcus pneumoniae JJA 7678808 YP_002736373.1 CDS rpsU NC_012466.1 1257726 1257902 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1257726..1257902) Streptococcus pneumoniae JJA 7679448 YP_002736374.1 CDS SPJ_1314 NC_012466.1 1258042 1258749 R identified by match to protein family HMM PF01182; glucosamine-6-phosphate deaminase (glucosamine-6-phosphate isomerase) (gnpda) (glcn6p deaminase) complement(1258042..1258749) Streptococcus pneumoniae JJA 7680146 YP_002736375.1 CDS queA NC_012466.1 1258900 1259928 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1258900..1259928 Streptococcus pneumoniae JJA 7678472 YP_002736376.1 CDS SPJ_1316 NC_012466.1 1260589 1260978 R identified by match to protein family HMM PF01473; choline binding protein complement(1260589..1260978) Streptococcus pneumoniae JJA 7680081 YP_002736377.1 CDS SPJ_1317 NC_012466.1 1262439 1262990 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1262439..1262990) Streptococcus pneumoniae JJA 7680190 YP_002736378.1 CDS nadE NC_012466.1 1263340 1264164 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1263340..1264164) Streptococcus pneumoniae JJA 7679738 YP_002736379.1 CDS pncB NC_012466.1 1264161 1265621 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1264161..1265621) Streptococcus pneumoniae JJA 7679492 YP_002736380.1 CDS SPJ_1320 NC_012466.1 1265737 1266225 R hypothetical protein complement(1265737..1266225) Streptococcus pneumoniae JJA 7679176 YP_002736381.1 CDS SPJ_1321 NC_012466.1 1266215 1266424 R identified by match to protein family HMM PF01381; hypothetical protein complement(1266215..1266424) Streptococcus pneumoniae JJA 7678536 YP_002736382.1 CDS SPJ_1322 NC_012466.1 1266810 1267289 R identified by Glimmer3; putative; hypothetical protein complement(1266810..1267289) Streptococcus pneumoniae JJA 7679828 YP_002736383.1 CDS SPJ_1325 NC_012466.1 1268533 1269258 R identified by match to protein family HMM PF01136; peptidase, U32 family complement(1268533..1269258) Streptococcus pneumoniae JJA 7678489 YP_002736384.1 CDS SPJ_1326 NC_012466.1 1269521 1269832 R identified by match to protein family HMM PF05495; CHY zinc finger domain protein complement(1269521..1269832) Streptococcus pneumoniae JJA 7679239 YP_002736385.1 CDS SPJ_1327 NC_012466.1 1269847 1271133 R identified by match to protein family HMM PF01136; peptidase, U32 family protein complement(1269847..1271133) Streptococcus pneumoniae JJA 7679305 YP_002736386.1 CDS SPJ_1330 NC_012466.1 1272311 1273528 D identified by match to protein family HMM PF01555; DNA modification methyltransferase M.XbaI 1272311..1273528 Streptococcus pneumoniae JJA 7679185 YP_002736387.1 CDS SPJ_1331 NC_012466.1 1273775 1273921 D hypothetical protein 1273775..1273921 Streptococcus pneumoniae JJA 7679646 YP_002736388.1 CDS SPJ_1332 NC_012466.1 1274043 1275035 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1274043..1275035) Streptococcus pneumoniae JJA 7680272 YP_002736389.1 CDS SPJ_1333 NC_012466.1 1275195 1276949 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein/permease 1275195..1276949 Streptococcus pneumoniae JJA 7678408 YP_002736390.1 CDS SPJ_1334 NC_012466.1 1276933 1278654 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1276933..1278654 Streptococcus pneumoniae JJA 7679012 YP_002736391.1 CDS SPJ_1335 NC_012466.1 1278665 1279249 D identified by match to protein family HMM TIGR02185; hypothetical protein 1278665..1279249 Streptococcus pneumoniae JJA 7679739 YP_002736392.1 CDS SPJ_1336 NC_012466.1 1279249 1279944 D identified by match to protein family HMM PF02361; cobalt transport protein 1279249..1279944 Streptococcus pneumoniae JJA 7680377 YP_002736393.1 CDS SPJ_1337 NC_012466.1 1279932 1281296 D identified by match to protein family HMM PF00005; cobalt ABC transporter, ATPase component, CbiO 1279932..1281296 Streptococcus pneumoniae JJA 7679733 YP_002736394.1 CDS SPJ_1338 NC_012466.1 1282288 1282545 R transposase complement(1282288..1282545) Streptococcus pneumoniae JJA 7680254 YP_002736395.1 CDS SPJ_1339 NC_012466.1 1282618 1282830 R transposase complement(1282618..1282830) Streptococcus pneumoniae JJA 7678438 YP_002736396.1 CDS SPJ_1340 NC_012466.1 1282839 1283207 R transposase complement(1282839..1283207) Streptococcus pneumoniae JJA 7679001 YP_002736397.1 CDS SPJ_1341 NC_012466.1 1283131 1283325 R hypothetical protein complement(1283131..1283325) Streptococcus pneumoniae JJA 7679946 YP_002736398.1 CDS SPJ_1342 NC_012466.1 1283495 1283845 R identified by match to protein family HMM PF05717; transposase complement(1283495..1283845) Streptococcus pneumoniae JJA 7680495 YP_002736399.1 CDS SPJ_1343 NC_012466.1 1283931 1284065 R hypothetical protein complement(1283931..1284065) Streptococcus pneumoniae JJA 7679415 YP_002736400.1 CDS guaA NC_012466.1 1284315 1285877 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1284315..1285877) Streptococcus pneumoniae JJA 7678898 YP_002736401.1 CDS SPJ_1345 NC_012466.1 1286019 1286717 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1286019..1286717 Streptococcus pneumoniae JJA 7680238 YP_002736402.1 CDS SPJ_1346 NC_012466.1 1286760 1287656 R identified by match to protein family HMM PF00892; membrane protein complement(1286760..1287656) Streptococcus pneumoniae JJA 7679940 YP_002736403.1 CDS SPJ_1347 NC_012466.1 1287665 1288600 R identified by match to protein family HMM PF00144; beta-lactamase complement(1287665..1288600) Streptococcus pneumoniae JJA 7678761 YP_002736404.1 CDS SPJ_1348 NC_012466.1 1288597 1289322 R CppA protein complement(1288597..1289322) Streptococcus pneumoniae JJA 7678941 YP_002736405.1 CDS SPJ_1349 NC_012466.1 1289406 1290041 R identified by match to protein family HMM PF00657; hypothetical protein complement(1289406..1290041) Streptococcus pneumoniae JJA 7679758 YP_002736406.1 CDS SPJ_1350 NC_012466.1 1290043 1290870 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(1290043..1290870) Streptococcus pneumoniae JJA 7680487 YP_002736407.1 CDS SPJ_1354 NC_012466.1 1291984 1292133 D hypothetical protein 1291984..1292133 Streptococcus pneumoniae JJA 7679250 YP_002736408.1 CDS SPJ_1353 NC_012466.1 1292087 1292278 R hypothetical protein complement(1292087..1292278) Streptococcus pneumoniae JJA 7679436 YP_002736409.1 CDS def NC_012466.1 1292457 1293068 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1292457..1293068 Streptococcus pneumoniae JJA 7680154 YP_002736410.1 CDS SPJ_1356 NC_012466.1 1293113 1293841 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase, TrmH family, group 3 1293113..1293841 Streptococcus pneumoniae JJA 7679196 YP_002736411.1 CDS trxB NC_012466.1 1293880 1294791 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(1293880..1294791) Streptococcus pneumoniae JJA 7678530 YP_002736412.1 CDS SPJ_1358 NC_012466.1 1294857 1295081 R hypothetical protein complement(1294857..1295081) Streptococcus pneumoniae JJA 7678876 YP_002736413.1 CDS SPJ_1359 NC_012466.1 1295159 1295902 R identified by match to protein family HMM PF00005; L-cystine import ATP-binding protein TcyN complement(1295159..1295902) Streptococcus pneumoniae JJA 7679219 YP_002736414.1 CDS SPJ_1360 NC_012466.1 1295902 1296702 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; aspartate/glutamate ABC transporter permease complement(1295902..1296702) Streptococcus pneumoniae JJA 7679505 YP_002736415.1 CDS SPJ_1361 NC_012466.1 1296860 1297216 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; arsenate reductase complement(1296860..1297216) Streptococcus pneumoniae JJA 7680476 YP_002736416.1 CDS SPJ_1362 NC_012466.1 1297229 1297741 R identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; O6-methylguanine-DNA methyltransferase complement(1297229..1297741) Streptococcus pneumoniae JJA 7678542 YP_002736417.1 CDS SPJ_1363 NC_012466.1 1297741 1298235 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1297741..1298235) Streptococcus pneumoniae JJA 7678964 YP_002736418.1 CDS SPJ_1364 NC_012466.1 1298370 1298816 D identified by match to protein family HMM PF08876; hypothetical protein 1298370..1298816 Streptococcus pneumoniae JJA 7679519 YP_002736419.1 CDS SPJ_1365 NC_012466.1 1298813 1299460 D identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 (Hemolysin III) (Hly-III) 1298813..1299460 Streptococcus pneumoniae JJA 7680280 YP_002736420.1 CDS SPJ_1366 NC_012466.1 1299481 1300062 R with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT complement(1299481..1300062) Streptococcus pneumoniae JJA 7678579 YP_002736421.1 CDS SPJ_1367 NC_012466.1 1300063 1300938 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(1300063..1300938) Streptococcus pneumoniae JJA 7679322 YP_002736422.1 CDS SPJ_1368 NC_012466.1 1301090 1302469 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; NADH oxidase (noxase) complement(1301090..1302469) Streptococcus pneumoniae JJA 7679657 YP_002736423.1 CDS SPJ_1369 NC_012466.1 1302611 1302766 D hypothetical protein 1302611..1302766 Streptococcus pneumoniae JJA 7680247 YP_002736424.1 CDS SPJ_1370 NC_012466.1 1302763 1303686 D identified by match to protein family HMM PF02424; thiamine biosynthesis lipoprotein 1302763..1303686 Streptococcus pneumoniae JJA 7678506 YP_002736425.1 CDS SPJ_1371 NC_012466.1 1303746 1304351 D identified by match to protein family HMM PF03358; NADPH-dependent fmn reductase domain protein 1303746..1304351 Streptococcus pneumoniae JJA 7678859 YP_002736426.1 CDS SPJ_1372 NC_012466.1 1304370 1305614 D identified by match to protein family HMM PF03358; NADPH-dependent fmn reductase domain protein 1304370..1305614 Streptococcus pneumoniae JJA 7679072 YP_002736427.1 CDS SPJ_1373 NC_012466.1 1305837 1306094 R identified by match to protein family HMM PF05979; hypothetical protein complement(1305837..1306094) Streptococcus pneumoniae JJA 7679851 YP_002736428.1 CDS glyS NC_012466.1 1306136 1308172 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(1306136..1308172) Streptococcus pneumoniae JJA 7679361 YP_002736429.1 CDS glyQ NC_012466.1 1308432 1309349 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1308432..1309349) Streptococcus pneumoniae JJA 7679552 YP_002736430.1 CDS SPJ_1376 NC_012466.1 1309368 1310129 R hypothetical protein complement(1309368..1310129) Streptococcus pneumoniae JJA 7680109 YP_002736431.1 CDS SPJ_1377 NC_012466.1 1310402 1311244 R identified by match to protein family HMM PF00248; 2,5-diketo-d-gluconic acid reductase a (2,5-dkgreductase a) (2,5-dkgr a) (25dkgr-a) (akr5c) complement(1310402..1311244) Streptococcus pneumoniae JJA 7680183 YP_002736432.1 CDS SPJ_1378 NC_012466.1 1311359 1312696 R identified by match to protein family HMM PF01522; peptidoglycan GlcNAc deacetylase complement(1311359..1312696) Streptococcus pneumoniae JJA 7678722 YP_002736433.1 CDS SPJ_1379 NC_012466.1 1312985 1313362 R hypothetical protein complement(1312985..1313362) Streptococcus pneumoniae JJA 7679474 YP_002736434.1 CDS SPJ_1380 NC_012466.1 1313541 1314554 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; oxidoreductase 1313541..1314554 Streptococcus pneumoniae JJA 7679963 YP_002736435.1 CDS SPJ_1381 NC_012466.1 1314551 1315633 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1314551..1315633 Streptococcus pneumoniae JJA 7679599 YP_002736436.1 CDS SPJ_1382 NC_012466.1 1315697 1315858 R hypothetical protein complement(1315697..1315858) Streptococcus pneumoniae JJA 7680098 YP_002736437.1 CDS SPJ_1383 NC_012466.1 1316238 1316423 R identified by match to protein family HMM PF01610; transposase complement(1316238..1316423) Streptococcus pneumoniae JJA 7678418 YP_002736438.1 CDS SPJ_1384 NC_012466.1 1316377 1316727 R transposase complement(1316377..1316727) Streptococcus pneumoniae JJA 7680297 YP_002736439.1 CDS SPJ_1385 NC_012466.1 1317170 1317688 D transposase 1317170..1317688 Streptococcus pneumoniae JJA 7678392 YP_002736440.1 CDS SPJ_1386 NC_012466.1 1317685 1317972 D identified by match to protein family HMM PF01610; transposase 1317685..1317972 Streptococcus pneumoniae JJA 7679290 YP_002736441.1 CDS SPJ_1387 NC_012466.1 1317969 1318520 D transposase 1317969..1318520 Streptococcus pneumoniae JJA 7679048 YP_002736442.1 CDS tuf NC_012466.1 1318604 1319800 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1318604..1319800) Streptococcus pneumoniae JJA 7679687 YP_002736443.1 CDS SPJ_1389 NC_012466.1 1319964 1320917 R identified by match to protein family HMM PF00665; transposase complement(1319964..1320917) Streptococcus pneumoniae JJA 7680286 YP_002736444.1 CDS SPJ_1390 NC_012466.1 1321388 1321510 R hypothetical protein complement(1321388..1321510) Streptococcus pneumoniae JJA 7678917 YP_002736445.1 CDS SPJ_1391 NC_012466.1 1321967 1322836 R identified by match to protein family HMM PF00230; glycerol facilitator-aquaporin gla (Aquaglyceroporin)(Glyceroaquaporin) complement(1321967..1322836) Streptococcus pneumoniae JJA 7678427 YP_002736446.1 CDS SPJ_1392 NC_012466.1 1323060 1323581 R identified by match to protein family HMM PF00746; match to protein family HMM PF06458; match to protein family HMM TIGR01167; MucBP domain family complement(1323060..1323581) Streptococcus pneumoniae JJA 7679894 YP_002736447.1 CDS SPJ_1393 NC_012466.1 1323539 1324147 R identified by Glimmer3; putative; hypothetical protein complement(1323539..1324147) Streptococcus pneumoniae JJA 7680366 YP_002736448.1 CDS SPJ_1394 NC_012466.1 1324135 1324644 R identified by Glimmer3; putative; hypothetical protein complement(1324135..1324644) Streptococcus pneumoniae JJA 7679404 YP_002736449.1 CDS SPJ_1395 NC_012466.1 1324755 1325009 R hypothetical protein complement(1324755..1325009) Streptococcus pneumoniae JJA 7678727 YP_002736450.1 CDS SPJ_1396 NC_012466.1 1325367 1325900 R transposase complement(1325367..1325900) Streptococcus pneumoniae JJA 7679532 YP_002736451.1 CDS SPJ_1397 NC_012466.1 1325887 1326021 R hypothetical protein complement(1325887..1326021) Streptococcus pneumoniae JJA 7680163 YP_002736452.1 CDS SPJ_1398 NC_012466.1 1326069 1326212 R hypothetical protein complement(1326069..1326212) Streptococcus pneumoniae JJA 7679122 YP_002736453.1 CDS SPJ_1399 NC_012466.1 1326446 1328164 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 1326446..1328164 Streptococcus pneumoniae JJA 7678642 YP_002736454.1 CDS SPJ_1400 NC_012466.1 1328275 1328622 D identified by match to protein family HMM TIGR01295; bacterocin transport accessory protein 1328275..1328622 Streptococcus pneumoniae JJA 7678822 YP_002736455.1 CDS SPJ_1401 NC_012466.1 1328901 1329737 R identified by match to protein family HMM PF00497; ABC transporter substrate-binding protein - glutamine transport complement(1328901..1329737) Streptococcus pneumoniae JJA 7680492 YP_002736456.1 CDS SPJ_1402 NC_012466.1 1329750 1330379 R identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ complement(1329750..1330379) Streptococcus pneumoniae JJA 7680035 YP_002736457.1 CDS SPJ_1403 NC_012466.1 1330389 1331030 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(1330389..1331030) Streptococcus pneumoniae JJA 7679004 YP_002736458.1 CDS SPJ_1404 NC_012466.1 1331176 1332405 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; TPR domain protein complement(1331176..1332405) Streptococcus pneumoniae JJA 7680237 YP_002736459.1 CDS SPJ_1405 NC_012466.1 1332395 1333561 R identified by match to protein family HMM PF01594; transport protein complement(1332395..1333561) Streptococcus pneumoniae JJA 7679264 YP_002736460.1 CDS SPJ_1406 NC_012466.1 1333705 1334718 D 3-carboxymuconate cyclase 1333705..1334718 Streptococcus pneumoniae JJA 7678759 YP_002736461.1 CDS SPJ_1407 NC_012466.1 1334858 1335640 D identified by match to protein family HMM PF01610; transposase 1334858..1335640 Streptococcus pneumoniae JJA 7680337 YP_002736462.1 CDS SPJ_1408 NC_012466.1 1335637 1336164 D transposase 1335637..1336164 Streptococcus pneumoniae JJA 7678411 YP_002736463.1 CDS atpC NC_012466.1 1336235 1336654 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1336235..1336654) Streptococcus pneumoniae JJA 7679022 YP_002736464.1 CDS atpD NC_012466.1 1336665 1338071 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1336665..1338071) Streptococcus pneumoniae JJA 7680152 YP_002736465.1 CDS atpG NC_012466.1 1338157 1339035 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1338157..1339035) Streptococcus pneumoniae JJA 7678528 YP_002736466.1 CDS atpA NC_012466.1 1339051 1340556 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1339051..1340556) Streptococcus pneumoniae JJA 7679205 YP_002736467.1 CDS atpH NC_012466.1 1340571 1341107 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1340571..1341107) Streptococcus pneumoniae JJA 7679275 YP_002736468.1 CDS atpF NC_012466.1 1341107 1341601 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(1341107..1341601) Streptococcus pneumoniae JJA 7679203 YP_002736469.1 CDS atpB NC_012466.1 1341615 1342331 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1341615..1342331) Streptococcus pneumoniae JJA 7678563 YP_002736470.1 CDS SPJ_1416 NC_012466.1 1342366 1342566 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1342366..1342566) Streptococcus pneumoniae JJA 7679776 YP_002736471.1 CDS SPJ_1417 NC_012466.1 1342641 1343648 R identified by match to protein family HMM PF00665; transposase complement(1342641..1343648) Streptococcus pneumoniae JJA 7678950 YP_002736472.1 CDS SPJ_1418 NC_012466.1 1344093 1344491 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family protein complement(1344093..1344491) Streptococcus pneumoniae JJA 7679942 YP_002736473.1 CDS greA NC_012466.1 1344999 1345481 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1344999..1345481) Streptococcus pneumoniae JJA 7680536 YP_002736474.1 CDS SPJ_1422 NC_012466.1 1347288 1347782 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1347288..1347782) Streptococcus pneumoniae JJA 7680198 YP_002736475.1 CDS SPJ_1423 NC_012466.1 1347779 1348243 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1347779..1348243) Streptococcus pneumoniae JJA 7678673 YP_002736476.1 CDS murC NC_012466.1 1348253 1349587 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1348253..1349587) Streptococcus pneumoniae JJA 7679414 YP_002736477.1 CDS SPJ_1425 NC_012466.1 1349598 1350215 R hypothetical protein complement(1349598..1350215) Streptococcus pneumoniae JJA 7679588 YP_002736478.1 CDS SPJ_1428 NC_012466.1 1353454 1354620 R identified by match to protein family HMM PF00155; putative aminotransferase B complement(1353454..1354620) Streptococcus pneumoniae JJA 7680056 YP_002736479.1 CDS SPJ_1429 NC_012466.1 1354628 1355722 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(1354628..1355722) Streptococcus pneumoniae JJA 7679961 YP_002736480.1 CDS SPJ_1432 NC_012466.1 1357733 1359691 R identified by match to protein family HMM PF00496; oligopeptide binding lipoprotein complement(1357733..1359691) Streptococcus pneumoniae JJA 7678557 YP_002736481.1 CDS SPJ_1433 NC_012466.1 1359895 1361517 R identified by match to protein family HMM PF01943; match to protein family HMM PF03023; polysaccharide transporter complement(1359895..1361517) Streptococcus pneumoniae JJA 7679539 YP_002736482.1 CDS SPJ_1434 NC_012466.1 1361623 1363068 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1361623..1363068 Streptococcus pneumoniae JJA 7679006 YP_002736483.1 CDS SPJ_1435 NC_012466.1 1363111 1363308 R identified by match to protein family HMM PF05532; hypothetical protein complement(1363111..1363308) Streptococcus pneumoniae JJA 7679395 YP_002736484.1 CDS SPJ_1436 NC_012466.1 1363409 1364005 R identified by match to protein family HMM PF08820; hypothetical protein complement(1363409..1364005) Streptococcus pneumoniae JJA 7678918 YP_002736485.1 CDS SPJ_1437 NC_012466.1 1364042 1364554 R hypothetical protein complement(1364042..1364554) Streptococcus pneumoniae JJA 7680068 YP_002736486.1 CDS SPJ_1438 NC_012466.1 1364640 1365575 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(1364640..1365575) Streptococcus pneumoniae JJA 7679601 YP_002736487.1 CDS SPJ_1439 NC_012466.1 1365646 1365945 R identified by match to protein family HMM PF01541; hypothetical protein complement(1365646..1365945) Streptococcus pneumoniae JJA 7679028 YP_002736488.1 CDS SPJ_1440 NC_012466.1 1365935 1366684 R identified by match to protein family HMM PF05175; methyltransferase complement(1365935..1366684) Streptococcus pneumoniae JJA 7678409 YP_002736489.1 CDS SPJ_1441 NC_012466.1 1366738 1367124 R identified by match to protein family HMM PF00575; hypothetical protein complement(1366738..1367124) Streptococcus pneumoniae JJA 7679050 YP_002736490.1 CDS SPJ_1442 NC_012466.1 1367099 1368499 R identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type complement(1367099..1368499) Streptococcus pneumoniae JJA 7678433 YP_002736491.1 CDS rpsR NC_012466.1 1368794 1369033 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1368794..1369033) Streptococcus pneumoniae JJA 7680502 YP_002736492.1 CDS SPJ_1444 NC_012466.1 1369065 1369535 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1369065..1369535) Streptococcus pneumoniae JJA 7679908 YP_002736493.1 CDS rpsF NC_012466.1 1369547 1369837 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1369547..1369837) Streptococcus pneumoniae JJA 7679333 YP_002736494.1 CDS asnC NC_012466.1 1369990 1371333 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1369990..1371333) Streptococcus pneumoniae JJA 7678671 YP_002736495.1 CDS SPJ_1447 NC_012466.1 1371352 1371717 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(1371352..1371717) Streptococcus pneumoniae JJA 7678692 YP_002736496.1 CDS SPJ_1448 NC_012466.1 1371710 1372897 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1371710..1372897) Streptococcus pneumoniae JJA 7679227 YP_002736497.1 CDS SPJ_1449 NC_012466.1 1372894 1373382 R identified by match to protein family HMM PF03413; peptidase propeptide and ypeb domain protein complement(1372894..1373382) Streptococcus pneumoniae JJA 7678785 YP_002736498.1 CDS SPJ_1450 NC_012466.1 1373449 1373565 R identified by Glimmer3; putative; hypothetical protein complement(1373449..1373565) Streptococcus pneumoniae JJA 7679277 YP_002736499.1 CDS SPJ_1451 NC_012466.1 1373703 1374251 D identified by match to protein family HMM PF02525; match to protein family HMM PF03358; oxidoreductase 1373703..1374251 Streptococcus pneumoniae JJA 7680024 YP_002736500.1 CDS SPJ_1452 NC_012466.1 1374489 1380806 R identified by match to protein family HMM PF01391; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; G5 domain family complement(1374489..1380806) Streptococcus pneumoniae JJA 7680483 YP_002736501.1 CDS SPJ_1453 NC_012466.1 1381022 1382506 D identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280; M protein trans-acting positive transcriptional regulator 1381022..1382506 Streptococcus pneumoniae JJA 7678488 YP_002736502.1 CDS SPJ_1454 NC_012466.1 1382557 1383285 R identified by match to protein family HMM PF03883; hypothetical protein complement(1382557..1383285) Streptococcus pneumoniae JJA 7678983 YP_002736503.1 CDS SPJ_1455 NC_012466.1 1383364 1383528 R hypothetical protein complement(1383364..1383528) Streptococcus pneumoniae JJA 7679731 YP_002736504.1 CDS SPJ_1456 NC_012466.1 1383707 1385302 R hypothetical protein complement(1383707..1385302) Streptococcus pneumoniae JJA 7678770 YP_002736505.1 CDS def2 NC_012466.1 1385314 1385724 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1385314..1385724) Streptococcus pneumoniae JJA 7680144 YP_002736506.1 CDS SPJ_1458 NC_012466.1 1385840 1386631 R YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU complement(1385840..1386631) Streptococcus pneumoniae JJA 7679544 YP_002736507.1 CDS SPJ_1459 NC_012466.1 1386644 1389340 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; calcium-transporting ATPase 1 complement(1386644..1389340) Streptococcus pneumoniae JJA 7679083 YP_002736508.1 CDS SPJ_1460 NC_012466.1 1389644 1390828 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1389644..1390828 Streptococcus pneumoniae JJA 7678739 YP_002736509.1 CDS SPJ_1461 NC_012466.1 1390971 1392842 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1390971..1392842) Streptococcus pneumoniae JJA 7679951 YP_002736510.1 CDS SPJ_1462 NC_012466.1 1392839 1394023 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(1392839..1394023) Streptococcus pneumoniae JJA 7679464 YP_002736511.1 CDS dapB NC_012466.1 1394035 1394802 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1394035..1394802) Streptococcus pneumoniae JJA 7680051 YP_002736512.1 CDS SPJ_1464 NC_012466.1 1395079 1395927 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein complement(1395079..1395927) Streptococcus pneumoniae JJA 7679557 YP_002736513.1 CDS SPJ_1465 NC_012466.1 1395929 1396303 R identified by match to protein family HMM PF06619; hypothetical protein complement(1395929..1396303) Streptococcus pneumoniae JJA 7679614 YP_002736514.1 CDS glmM NC_012466.1 1396377 1397729 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1396377..1397729) Streptococcus pneumoniae JJA 7679127 YP_002736515.1 CDS SPJ_1467 NC_012466.1 1397753 1398532 R identified by match to protein family HMM PF07949; lipoprotein, putative complement(1397753..1398532) Streptococcus pneumoniae JJA 7678647 YP_002736516.1 CDS SPJ_1468 NC_012466.1 1398519 1399376 R identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(1398519..1399376) Streptococcus pneumoniae JJA 7680346 YP_002736517.1 CDS SPJ_1469 NC_012466.1 1399512 1400480 D identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; thioredoxin reductase 1399512..1400480 Streptococcus pneumoniae JJA 7679220 YP_002736518.1 CDS SPJ_1470 NC_012466.1 1400514 1401425 R identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein complement(1400514..1401425) Streptococcus pneumoniae JJA 7678735 YP_002736519.1 CDS SPJ_1471 NC_012466.1 1401422 1402399 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; transporter complement(1401422..1402399) Streptococcus pneumoniae JJA 7680437 YP_002736520.1 CDS SPJ_1472 NC_012466.1 1402396 1403286 R identified by match to protein family HMM PF03668; hypothetical protein complement(1402396..1403286) Streptococcus pneumoniae JJA 7680099 YP_002736521.1 CDS SPJ_1473 NC_012466.1 1403338 1403718 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP, putative complement(1403338..1403718) Streptococcus pneumoniae JJA 7678982 YP_002736522.1 CDS engB NC_012466.1 1403729 1404316 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1403729..1404316) Streptococcus pneumoniae JJA 7678552 YP_002736523.1 CDS clpX NC_012466.1 1404325 1405557 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1404325..1405557) Streptococcus pneumoniae JJA 7680301 YP_002736524.1 CDS SPJ_1476 NC_012466.1 1405589 1405759 R hypothetical protein complement(1405589..1405759) Streptococcus pneumoniae JJA 7679822 YP_002736525.1 CDS folA NC_012466.1 1405759 1406265 R identified by match to protein family HMM PF00186; dihydrofolate reductase complement(1405759..1406265) Streptococcus pneumoniae JJA 7678484 YP_002736526.1 CDS SPJ_1478 NC_012466.1 1406395 1406913 R identified by match to protein family HMM PF00210; DNA protection during starvation protein complement(1406395..1406913) Streptococcus pneumoniae JJA 7678951 YP_002736527.1 CDS SPJ_1479 NC_012466.1 1407411 1408883 R identified by match to protein family HMM PF01183; match to protein family HMM PF01473; 1,4-beta-N-acetylmuramidase complement(1407411..1408883) Streptococcus pneumoniae JJA 7680020 YP_002736528.1 CDS tpiA NC_012466.1 1408954 1409712 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1408954..1409712) Streptococcus pneumoniae JJA 7680451 YP_002736529.1 CDS SPJ_1481 NC_012466.1 1409810 1410487 R identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD complement(1409810..1410487) Streptococcus pneumoniae JJA 7679664 YP_002736530.1 CDS metA NC_012466.1 1410496 1411440 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(1410496..1411440) Streptococcus pneumoniae JJA 7678736 YP_002736531.1 CDS SPJ_1484 NC_012466.1 1411480 1411635 D identified by Glimmer3; putative; hypothetical protein 1411480..1411635 Streptococcus pneumoniae JJA 7678478 YP_002736532.1 CDS apt NC_012466.1 1411622 1412152 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1411622..1412152) Streptococcus pneumoniae JJA 7680510 YP_002736533.1 CDS SPJ_1485 NC_012466.1 1412222 1412980 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase complement(1412222..1412980) Streptococcus pneumoniae JJA 7678937 YP_002736534.1 CDS SPJ_1486 NC_012466.1 1413188 1413358 D hypothetical protein 1413188..1413358 Streptococcus pneumoniae JJA 7678810 YP_002736535.1 CDS SPJ_1487 NC_012466.1 1413481 1414611 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; multiple sugar-binding transport ATP-binding protein MsmK complement(1413481..1414611) Streptococcus pneumoniae JJA 7678965 YP_002736536.1 CDS SPJ_1489 NC_012466.1 1415061 1415636 R identified by match to protein family HMM PF00857; isochorismatase complement(1415061..1415636) Streptococcus pneumoniae JJA 7680568 YP_002736537.1 CDS codY NC_012466.1 1415636 1416424 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(1415636..1416424) Streptococcus pneumoniae JJA 7679394 YP_002736538.1 CDS SPJ_1491 NC_012466.1 1416689 1418263 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase, DEAD/DEAH box family complement(1416689..1418263) Streptococcus pneumoniae JJA 7678403 YP_002736539.1 CDS SPJ_1492 NC_012466.1 1418462 1419688 R identified by match to protein family HMM PF07690; major facilitator:Oxalate:Formate Antiporter complement(1418462..1419688) Streptococcus pneumoniae JJA 7680361 YP_002736540.1 CDS SPJ_1493 NC_012466.1 1419881 1421197 D Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 1419881..1421197 Streptococcus pneumoniae JJA 7679955 YP_002736541.1 CDS SPJ_1494 NC_012466.1 1421296 1422639 D identified by match to protein family HMM PF08245; match to protein family HMM PF08353; Mur ligase family protein 1421296..1422639 Streptococcus pneumoniae JJA 7679304 YP_002736542.1 CDS SPJ_1495 NC_012466.1 1422639 1423421 D identified by match to protein family HMM PF07685; cobyric acid synthase 1422639..1423421 Streptococcus pneumoniae JJA 7678678 YP_002736543.1 CDS SPJ_1496 NC_012466.1 1423547 1424629 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; Xaa-Pro dipeptidase (X-Pro dipeptidase) (Prolinedipeptidase) (Prolidase) (Imidodipeptidase) 1423547..1424629 Streptococcus pneumoniae JJA 7678597 YP_002736544.1 CDS SPJ_1497 NC_012466.1 1424679 1424825 D acetyltransferase, gnat family 1424679..1424825 Streptococcus pneumoniae JJA 7680295 YP_002736545.1 CDS SPJ_1498 NC_012466.1 1424953 1425786 R identified by match to protein family HMM PF00665; integrase core domain protein complement(1424953..1425786) Streptococcus pneumoniae JJA 7680507 YP_002736546.1 CDS SPJ_1499 NC_012466.1 1425779 1425946 R hypothetical protein complement(1425779..1425946) Streptococcus pneumoniae JJA 7678827 YP_002736547.1 CDS SPJ_1500 NC_012466.1 1426082 1426294 R transposase complement(1426082..1426294) Streptococcus pneumoniae JJA 7678500 YP_002736548.1 CDS SPJ_1501 NC_012466.1 1426521 1426982 R hypothetical protein complement(1426521..1426982) Streptococcus pneumoniae JJA 7678968 YP_002736549.1 CDS SPJ_1502 NC_012466.1 1426960 1427733 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(1426960..1427733) Streptococcus pneumoniae JJA 7678449 YP_002736550.1 CDS truA NC_012466.1 1427723 1428472 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1427723..1428472) Streptococcus pneumoniae JJA 7679031 YP_002736551.1 CDS SPJ_1505 NC_012466.1 1428652 1428813 D hypothetical protein 1428652..1428813 Streptococcus pneumoniae JJA 7679673 YP_002736552.1 CDS SPJ_1504 NC_012466.1 1428785 1429936 R identified by match to protein family HMM PF07690; major facilitator superfamily transporter complement(1428785..1429936) Streptococcus pneumoniae JJA 7678664 YP_002736553.1 CDS SPJ_1506 NC_012466.1 1429908 1430024 D identified by Glimmer3; putative; hypothetical protein 1429908..1430024 Streptococcus pneumoniae JJA 7680271 YP_002736554.1 CDS SPJ_1507 NC_012466.1 1430176 1430805 R hypothetical protein complement(1430176..1430805) Streptococcus pneumoniae JJA 7679410 YP_002736555.1 CDS phnA NC_012466.1 1430808 1431146 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA complement(1430808..1431146) Streptococcus pneumoniae JJA 7679818 YP_002736556.1 CDS cmk NC_012466.1 1431277 1431948 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1431277..1431948) Streptococcus pneumoniae JJA 7680306 YP_002736557.1 CDS SPJ_1510 NC_012466.1 1431957 1432433 R hypothetical protein complement(1431957..1432433) Streptococcus pneumoniae JJA 7679864 YP_002736558.1 CDS SPJ_1511 NC_012466.1 1432479 1432691 D ferredoxin 1432479..1432691 Streptococcus pneumoniae JJA 7680511 YP_002736559.1 CDS SPJ_1512 NC_012466.1 1432753 1433706 R identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase complement(1432753..1433706) Streptococcus pneumoniae JJA 7678795 YP_002736560.1 CDS galE1 NC_012466.1 1433708 1434727 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(1433708..1434727) Streptococcus pneumoniae JJA 7679002 YP_002736561.1 CDS SPJ_1514 NC_012466.1 1434830 1434958 R chlorohydrolase complement(1434830..1434958) Streptococcus pneumoniae JJA 7679496 YP_002736562.1 CDS SPJ_1515 NC_012466.1 1435028 1436131 R identified by match to protein family HMM PF01266; FAD dependent oxidoreductase complement(1435028..1436131) Streptococcus pneumoniae JJA 7680248 YP_002736563.1 CDS SPJ_1516 NC_012466.1 1436148 1436945 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1436148..1436945) Streptococcus pneumoniae JJA 7678570 YP_002736564.1 CDS SPJ_1517 NC_012466.1 1436932 1437609 R identified by match to protein family HMM PF04816; Bcl-2 family protein complement(1436932..1437609) Streptococcus pneumoniae JJA 7679887 YP_002736565.1 CDS SPJ_1518 NC_012466.1 1437711 1440047 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; P-type ATPase - metal cation transport complement(1437711..1440047) Streptococcus pneumoniae JJA 7679471 YP_002736566.1 CDS SPJ_1519 NC_012466.1 1440180 1440929 D identified by match to protein family HMM PF01553; acyltransferase family protein 1440180..1440929 Streptococcus pneumoniae JJA 7679849 YP_002736567.1 CDS SPJ_1520 NC_012466.1 1441221 1441835 R identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779; CadD complement(1441221..1441835) Streptococcus pneumoniae JJA 7680313 YP_002736568.1 CDS rpsO NC_012466.1 1442650 1442919 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1442650..1442919) Streptococcus pneumoniae JJA 7679842 YP_002736569.1 CDS SPJ_1522 NC_012466.1 1443060 1443689 R YwnB complement(1443060..1443689) Streptococcus pneumoniae JJA 7680369 YP_002736570.1 CDS SPJ_1523 NC_012466.1 1444558 1444881 D hypothetical protein 1444558..1444881 Streptococcus pneumoniae JJA 7679174 YP_002736571.1 CDS thrS NC_012466.1 1444939 1446882 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1444939..1446882 Streptococcus pneumoniae JJA 7679606 YP_002736572.1 CDS SPJ_1525 NC_012466.1 1446931 1447905 R identified by match to protein family HMM PF02518; histidine kinase complement(1446931..1447905) Streptococcus pneumoniae JJA 7680092 YP_002736573.1 CDS SPJ_1526 NC_012466.1 1447898 1448575 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator complement(1447898..1448575) Streptococcus pneumoniae JJA 7678929 YP_002736574.1 CDS SPJ_1527 NC_012466.1 1448731 1449804 D hypothetical protein 1448731..1449804 Streptococcus pneumoniae JJA 7679352 YP_002736575.1 CDS SPJ_1528 NC_012466.1 1449895 1450197 R hypothetical protein complement(1449895..1450197) Streptococcus pneumoniae JJA 7678600 YP_002736576.1 CDS SPJ_1529 NC_012466.1 1450265 1450702 R identified by match to protein family HMM PF02082; Rrf2 family protein complement(1450265..1450702) Streptococcus pneumoniae JJA 7679087 YP_002736577.1 CDS SPJ_1530 NC_012466.1 1450778 1451620 R identified by match to protein family HMM PF00149; metallophosphoesterase complement(1450778..1451620) Streptococcus pneumoniae JJA 7678640 YP_002736578.1 CDS SPJ_1531 NC_012466.1 1451732 1452382 D identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron-dependent transcriptional regulator 1451732..1452382 Streptococcus pneumoniae JJA 7680340 YP_002736579.1 CDS SPJ_1532 NC_012466.1 1452363 1452497 D identified by Glimmer3; putative; hypothetical protein 1452363..1452497 Streptococcus pneumoniae JJA 7679890 YP_002736580.1 CDS SPJ_1533 NC_012466.1 1452706 1453227 D identified by Glimmer3; putative; hypothetical protein 1452706..1453227 Streptococcus pneumoniae JJA 7679442 YP_002736581.1 CDS SPJ_1534 NC_012466.1 1453358 1453795 D hypothetical protein 1453358..1453795 Streptococcus pneumoniae JJA 7678903 YP_002736582.1 CDS SPJ_1535 NC_012466.1 1453890 1454189 R hypothetical protein complement(1453890..1454189) Streptococcus pneumoniae JJA 7678475 YP_002736583.1 CDS SPJ_1536 NC_012466.1 1455318 1455431 D identified by Glimmer3; putative; hypothetical protein 1455318..1455431 Streptococcus pneumoniae JJA 7680187 YP_002736584.1 CDS SPJ_1537 NC_012466.1 1455571 1455732 D hypothetical protein 1455571..1455732 Streptococcus pneumoniae JJA 7678390 YP_002736585.1 CDS dtd NC_012466.1 1455771 1456214 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1455771..1456214) Streptococcus pneumoniae JJA 7679872 YP_002736586.1 CDS spoT NC_012466.1 1456244 1458466 R identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase complement(1456244..1458466) Streptococcus pneumoniae JJA 7678465 YP_002736587.1 CDS SPJ_1540 NC_012466.1 1458877 1459119 D identified by Glimmer3; putative; hypothetical protein 1458877..1459119 Streptococcus pneumoniae JJA 7678794 YP_002736588.1 CDS SPJ_1541 NC_012466.1 1459459 1460088 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 1459459..1460088 Streptococcus pneumoniae JJA 7679208 YP_002736589.1 CDS SPJ_1542 NC_012466.1 1460211 1462103 R identified by match to protein family HMM PF01431; match to protein family HMM PF05649; endopeptidase O complement(1460211..1462103) Streptococcus pneumoniae JJA 7678440 YP_002736590.1 CDS SPJ_1543 NC_012466.1 1462394 1463116 D identified by match to protein family HMM PF00005; manganese transport system ATP-binding protein MntA 1462394..1463116 Streptococcus pneumoniae JJA 7680399 YP_002736591.1 CDS SPJ_1544 NC_012466.1 1463113 1463961 D identified by match to protein family HMM PF00950; manganese transport system membrane protein MntB 1463113..1463961 Streptococcus pneumoniae JJA 7679812 YP_002736592.1 CDS SPJ_1545 NC_012466.1 1463993 1464922 D identified by match to protein family HMM PF01297; manganese ABC transporter substrate-binding lipoprotein (Adhesin B) (Saliva-binding protein) 1463993..1464922 Streptococcus pneumoniae JJA 7679944 YP_002736593.1 CDS tpx NC_012466.1 1465045 1465536 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1465045..1465536 Streptococcus pneumoniae JJA 7679347 YP_002736594.1 CDS SPJ_1547 NC_012466.1 1465587 1465718 D DNA alkylation repair enzyme 1465587..1465718 Streptococcus pneumoniae JJA 7680071 YP_002736595.1 CDS SPJ_1548 NC_012466.1 1465744 1468452 R identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein complement(1465744..1468452) Streptococcus pneumoniae JJA 7679688 YP_002736596.1 CDS SPJ_1549 NC_012466.1 1468454 1469155 R identified by match to protein family HMM PF00005; macrolide export ATP-binding/permease protein MacB complement(1468454..1469155) Streptococcus pneumoniae JJA 7680197 YP_002736597.1 CDS SPJ_1550 NC_012466.1 1469286 1471697 R alpha-fucosidase complement(1469286..1471697) Streptococcus pneumoniae JJA 7679650 YP_002736598.1 CDS gpmA NC_012466.1 1471750 1472442 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1471750..1472442) Streptococcus pneumoniae JJA 7679433 YP_002736599.1 CDS SPJ_1552 NC_012466.1 1472493 1472681 R hypothetical protein complement(1472493..1472681) Streptococcus pneumoniae JJA 7678510 YP_002736600.1 CDS SPJ_1553 NC_012466.1 1472977 1473339 R integral membrane protein complement(1472977..1473339) Streptococcus pneumoniae JJA 7680394 YP_002736601.1 CDS ileS NC_012466.1 1473749 1476541 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1473749..1476541) Streptococcus pneumoniae JJA 7679934 YP_002736602.1 CDS SPJ_1555 NC_012466.1 1476794 1476910 R hypothetical protein complement(1476794..1476910) Streptococcus pneumoniae JJA 7679741 YP_002736603.1 CDS SPJ_1556 NC_012466.1 1476889 1477677 R identified by match to protein family HMM PF05103; cell-division initiation protein complement(1476889..1477677) Streptococcus pneumoniae JJA 7678704 YP_002736604.1 CDS SPJ_1557 NC_012466.1 1477686 1478471 R identified by match to protein family HMM PF01479; YlmH protein complement(1477686..1478471) Streptococcus pneumoniae JJA 7679985 YP_002736605.1 CDS SPJ_1558 NC_012466.1 1478468 1478731 R identified by match to protein family HMM PF02325; yggt family, putative complement(1478468..1478731) Streptococcus pneumoniae JJA 7680520 YP_002736606.1 CDS SPJ_1559 NC_012466.1 1478731 1479270 R identified by match to protein family HMM PF04472; YlmF protein complement(1478731..1479270) Streptococcus pneumoniae JJA 7679540 YP_002736607.1 CDS SPJ_1560 NC_012466.1 1479280 1479951 R identified by match to protein family HMM TIGR00044; pyridoxal phosphate enzyme, YggS family complement(1479280..1479951) Streptococcus pneumoniae JJA 7679059 YP_002736608.1 CDS ftsZ NC_012466.1 1479956 1481215 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1479956..1481215) Streptococcus pneumoniae JJA 7678943 YP_002736609.1 CDS ftsA NC_012466.1 1481232 1482605 R identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(1481232..1482605) Streptococcus pneumoniae JJA 7678592 YP_002736610.1 CDS SPJ_1563 NC_012466.1 1482824 1483528 R identified by match to protein family HMM TIGR02206; hypothetical protein complement(1482824..1483528) Streptococcus pneumoniae JJA 7680220 YP_002736611.1 CDS SPJ_1564 NC_012466.1 1483619 1484230 R identified by match to protein family HMM PF00293; mutator protein complement(1483619..1484230) Streptococcus pneumoniae JJA 7679335 YP_002736612.1 CDS SPJ_1565 NC_012466.1 1484217 1485590 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase complement(1484217..1485590) Streptococcus pneumoniae JJA 7679337 YP_002736613.1 CDS ddl NC_012466.1 1485674 1486717 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(1485674..1486717) Streptococcus pneumoniae JJA 7678708 YP_002736614.1 CDS recR NC_012466.1 1486893 1487489 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1486893..1487489) Streptococcus pneumoniae JJA 7680474 YP_002736615.1 CDS SPJ_1568 NC_012466.1 1487500 1489542 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2B complement(1487500..1489542) Streptococcus pneumoniae JJA 7678882 YP_002736616.1 CDS SPJ_1569 NC_012466.1 1489757 1490608 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator, RpiR family 1489757..1490608 Streptococcus pneumoniae JJA 7679573 YP_002736617.1 CDS SPJ_1570 NC_012466.1 1490624 1491508 R identified by match to protein family HMM PF00480; glucokinase complement(1490624..1491508) Streptococcus pneumoniae JJA 7679200 YP_002736618.1 CDS SPJ_1571 NC_012466.1 1491526 1492443 R identified by match to protein family HMM PF00701; N-acetylneuraminate lyase complement(1491526..1492443) Streptococcus pneumoniae JJA 7680319 YP_002736619.1 CDS SPJ_1572 NC_012466.1 1492612 1493256 R identified by match to protein family HMM PF04854; hypothetical protein complement(1492612..1493256) Streptococcus pneumoniae JJA 7679865 YP_002736620.1 CDS SPJ_1573 NC_012466.1 1493543 1493677 R hypothetical protein complement(1493543..1493677) Streptococcus pneumoniae JJA 7679861 YP_002736621.1 CDS SPJ_1574 NC_012466.1 1493984 1494436 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(1493984..1494436) Streptococcus pneumoniae JJA 7679353 YP_002736622.1 CDS SPJ_1575 NC_012466.1 1494708 1495547 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(1494708..1495547) Streptococcus pneumoniae JJA 7678870 YP_002736623.1 CDS SPJ_1576 NC_012466.1 1495563 1496450 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(1495563..1496450) Streptococcus pneumoniae JJA 7680179 YP_002736624.1 CDS SPJ_1577 NC_012466.1 1496681 1498009 R identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein complement(1496681..1498009) Streptococcus pneumoniae JJA 7678710 YP_002736625.1 CDS SPJ_1578 NC_012466.1 1498134 1499651 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; pts system maltose- and glucose-specific eiicb component complement(1498134..1499651) Streptococcus pneumoniae JJA 7680287 YP_002736626.1 CDS SPJ_1579 NC_012466.1 1499670 1500368 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1499670..1500368) Streptococcus pneumoniae JJA 7680497 YP_002736627.1 CDS SPJ_1580 NC_012466.1 1500542 1501645 R identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; putative oxidoreductase YjhC complement(1500542..1501645) Streptococcus pneumoniae JJA 7678661 YP_002736628.1 CDS SPJ_1581 NC_012466.1 1501657 1503750 R identified by match to protein family HMM PF02012; match to protein family HMM PF02973; sialidase B (Neuraminidase B) complement(1501657..1503750) Streptococcus pneumoniae JJA 7679000 YP_002736629.1 CDS SPJ_1582 NC_012466.1 1503768 1504601 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1503768..1504601) Streptococcus pneumoniae JJA 7679922 YP_002736630.1 CDS SPJ_1583 NC_012466.1 1504601 1505485 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1504601..1505485) Streptococcus pneumoniae JJA 7680276 YP_002736631.1 CDS SPJ_1584 NC_012466.1 1505564 1506901 R identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein complement(1505564..1506901) Streptococcus pneumoniae JJA 7678426 YP_002736632.1 CDS SPJ_1585 NC_012466.1 1506920 1507372 R identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein complement(1506920..1507372) Streptococcus pneumoniae JJA 7678694 YP_002736633.1 CDS SPJ_1586 NC_012466.1 1508386 1511214 R identified by match to protein family HMM PF02012; match to protein family HMM PF02973; match to protein family HMM TIGR01167; neuraminidase complement(1508386..1511214) Streptococcus pneumoniae JJA 7679311 YP_002736634.1 CDS SPJ_1587 NC_012466.1 1511571 1511798 R hypothetical protein complement(1511571..1511798) Streptococcus pneumoniae JJA 7680021 YP_002736635.1 CDS SPJ_1588 NC_012466.1 1512196 1512609 D hypothetical protein 1512196..1512609 Streptococcus pneumoniae JJA 7679076 YP_002736636.1 CDS SPJ_1589 NC_012466.1 1512963 1513943 R identified by match to protein family HMM PF05448; xylan esterase 1 complement(1512963..1513943) Streptococcus pneumoniae JJA 7678914 YP_002736637.1 CDS recG NC_012466.1 1514260 1516275 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1514260..1516275) Streptococcus pneumoniae JJA 7680529 YP_002736638.1 CDS alr NC_012466.1 1516294 1517397 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1516294..1517397) Streptococcus pneumoniae JJA 7679843 YP_002736639.1 CDS acpS NC_012466.1 1517387 1517749 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(1517387..1517749) Streptococcus pneumoniae JJA 7679370 YP_002736640.1 CDS SPJ_1593 NC_012466.1 1517794 1518825 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1517794..1518825) Streptococcus pneumoniae JJA 7679743 YP_002736641.1 CDS SPJ_1594 NC_012466.1 1518827 1519858 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1518827..1519858) Streptococcus pneumoniae JJA 7680414 YP_002736642.1 CDS secA NC_012466.1 1519939 1522452 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1519939..1522452) Streptococcus pneumoniae JJA 7678529 YP_002736643.1 CDS SPJ_1596 NC_012466.1 1522598 1522885 R hypothetical protein complement(1522598..1522885) Streptococcus pneumoniae JJA 7679151 YP_002736644.1 CDS SPJ_1597 NC_012466.1 1522913 1523545 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1522913..1523545) Streptococcus pneumoniae JJA 7679271 YP_002736645.1 CDS SPJ_1598 NC_012466.1 1523549 1524190 R hypothetical protein complement(1523549..1524190) Streptococcus pneumoniae JJA 7678684 YP_002736646.1 CDS SPJ_1599 NC_012466.1 1524183 1524974 R hypothetical protein complement(1524183..1524974) Streptococcus pneumoniae JJA 7679323 YP_002736647.1 CDS SPJ_1600 NC_012466.1 1524996 1525388 R hypothetical protein complement(1524996..1525388) Streptococcus pneumoniae JJA 7679935 YP_002736648.1 CDS SPJ_1601 NC_012466.1 1525715 1526566 D identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716; transcriptional activator, Rgg/GadR/MutR family, C- domain protein 1525715..1526566 Streptococcus pneumoniae JJA 7680462 YP_002736649.1 CDS SPJ_1602 NC_012466.1 1526798 1527148 R hypothetical protein complement(1526798..1527148) Streptococcus pneumoniae JJA 7678520 YP_002736650.1 CDS SPJ_1603 NC_012466.1 1527288 1527623 R hypothetical protein complement(1527288..1527623) Streptococcus pneumoniae JJA 7679198 YP_002736651.1 CDS engA NC_012466.1 1527711 1529021 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1527711..1529021) Streptococcus pneumoniae JJA 7679515 YP_002736652.1 CDS SPJ_1605 NC_012466.1 1529035 1529748 R identified by match to protein family HMM PF00881; nitroreductase family protein complement(1529035..1529748) Streptococcus pneumoniae JJA 7679783 YP_002736653.1 CDS SPJ_1606 NC_012466.1 1529745 1530641 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1529745..1530641) Streptococcus pneumoniae JJA 7678569 YP_002736654.1 CDS SPJ_1607 NC_012466.1 1530642 1531811 R identified by match to protein family HMM PF07261; replication initiation and membrane attachment protein complement(1530642..1531811) Streptococcus pneumoniae JJA 7678920 YP_002736655.1 CDS nrdR NC_012466.1 1531812 1532285 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(1531812..1532285) Streptococcus pneumoniae JJA 7679473 YP_002736656.1 CDS SPJ_1609 NC_012466.1 1532425 1532790 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1532425..1532790 Streptococcus pneumoniae JJA 7678848 YP_002736657.1 CDS SPJ_1610 NC_012466.1 1532795 1533490 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1532795..1533490 Streptococcus pneumoniae JJA 7680407 YP_002736658.1 CDS SPJ_1611 NC_012466.1 1533507 1534274 D ABC transporter ATP-binding protein 1533507..1534274 Streptococcus pneumoniae JJA 7680273 YP_002736659.1 CDS SPJ_1612 NC_012466.1 1534627 1535826 R Na+ ABC transporter permease complement(1534627..1535826) Streptococcus pneumoniae JJA 7680518 YP_002736660.1 CDS SPJ_1613 NC_012466.1 1535823 1536716 R identified by match to protein family HMM PF00005; Na+ ABC transporter ATP-binding protein complement(1535823..1536716) Streptococcus pneumoniae JJA 7679062 YP_002736661.1 CDS SPJ_1614 NC_012466.1 1536839 1537030 D chlorohydrolase 1536839..1537030 Streptococcus pneumoniae JJA 7678596 YP_002736662.1 CDS SPJ_1615 NC_012466.1 1538026 1538643 D identified by match to protein family HMM PF09335; hypothetical protein 1538026..1538643 Streptococcus pneumoniae JJA 7680314 YP_002736663.1 CDS SPJ_1616 NC_012466.1 1538963 1539850 R identified by match to protein family HMM PF00480; fructokinase complement(1538963..1539850) Streptococcus pneumoniae JJA 7679824 YP_002736664.1 CDS SPJ_1617 NC_012466.1 1539999 1541882 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996; pts system, sucrose-specific iibc component complement(1539999..1541882) Streptococcus pneumoniae JJA 7678626 YP_002736665.1 CDS SPJ_1618 NC_012466.1 1542009 1542206 R hypothetical protein complement(1542009..1542206) Streptococcus pneumoniae JJA 7679560 YP_002736666.1 CDS SPJ_1619 NC_012466.1 1542259 1543713 D identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase (Sucrase) (Invertase) 1542259..1543713 Streptococcus pneumoniae JJA 7679110 YP_002736667.1 CDS SPJ_1620 NC_012466.1 1543694 1544659 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor (Scr operon regulatory protein) 1543694..1544659 Streptococcus pneumoniae JJA 7678601 YP_002736668.1 CDS SPJ_1621 NC_012466.1 1544694 1545968 R identified by match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative complement(1544694..1545968) Streptococcus pneumoniae JJA 7679145 YP_002736669.1 CDS SPJ_1622 NC_012466.1 1545968 1547164 R identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase complement(1545968..1547164) Streptococcus pneumoniae JJA 7678544 YP_002736670.1 CDS SPJ_1623 NC_012466.1 1547271 1547519 R hypothetical protein complement(1547271..1547519) Streptococcus pneumoniae JJA 7680484 YP_002736671.1 CDS SPJ_1624 NC_012466.1 1547587 1548054 R identified by match to protein family HMM PF01609; transposase (IS4 family) complement(1547587..1548054) Streptococcus pneumoniae JJA 7679784 YP_002736672.1 CDS SPJ_1625 NC_012466.1 1548002 1548115 R tranposase complement(1548002..1548115) Streptococcus pneumoniae JJA 7678454 YP_002736673.1 CDS SPJ_1626 NC_012466.1 1548274 1548723 R hypothetical protein complement(1548274..1548723) Streptococcus pneumoniae JJA 7678927 YP_002736674.1 CDS SPJ_1627 NC_012466.1 1548725 1549483 R identified by match to protein family HMM PF06738; hypothetical protein complement(1548725..1549483) Streptococcus pneumoniae JJA 7679706 YP_002736675.1 CDS SPJ_1628 NC_012466.1 1549598 1551577 R identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793; Stk1 complement(1549598..1551577) Streptococcus pneumoniae JJA 7680284 YP_002736676.1 CDS SPJ_1629 NC_012466.1 1551574 1552314 R identified by match to protein family HMM PF00481; protein phosphatase PrpC complement(1551574..1552314) Streptococcus pneumoniae JJA 7680540 YP_002736677.1 CDS sun NC_012466.1 1552329 1553642 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B complement(1552329..1553642) Streptococcus pneumoniae JJA 7678826 YP_002736678.1 CDS fmt NC_012466.1 1553635 1554570 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1553635..1554570) Streptococcus pneumoniae JJA 7678606 YP_002736679.1 CDS SPJ_1632 NC_012466.1 1554583 1556979 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1554583..1556979) Streptococcus pneumoniae JJA 7679321 YP_002736680.1 CDS rpoZ NC_012466.1 1557045 1557356 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1557045..1557356) Streptococcus pneumoniae JJA 7679616 YP_002736681.1 CDS gmk NC_012466.1 1557384 1558010 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1557384..1558010) Streptococcus pneumoniae JJA 7680046 YP_002736682.1 CDS SPJ_1635 NC_012466.1 1558140 1559753 R identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319; hypothetical protein complement(1558140..1559753) Streptococcus pneumoniae JJA 7678837 YP_002736683.1 CDS SPJ_1636 NC_012466.1 1559944 1560198 R identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module toxin, Txe/YoeB family complement(1559944..1560198) Streptococcus pneumoniae JJA 7679621 YP_002736684.1 CDS SPJ_1637 NC_012466.1 1560202 1560456 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein complement(1560202..1560456) Streptococcus pneumoniae JJA 7679826 YP_002736685.1 CDS SPJ_1638 NC_012466.1 1560694 1561791 R identified by match to protein family HMM PF05636; hypothetical protein complement(1560694..1561791) Streptococcus pneumoniae JJA 7678721 YP_002736686.1 CDS SPJ_1639 NC_012466.1 1561801 1562547 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase complement(1561801..1562547) Streptococcus pneumoniae JJA 7679339 YP_002736687.1 CDS SPJ_1640 NC_012466.1 1562650 1563003 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; putative iojap homolog complement(1562650..1563003) Streptococcus pneumoniae JJA 7680000 YP_002736688.1 CDS SPJ_1641 NC_012466.1 1563016 1563516 R identified by match to protein family HMM PF00857; isochorismatase family protein complement(1563016..1563516) Streptococcus pneumoniae JJA 7679953 YP_002736689.1 CDS SPJ_1642 NC_012466.1 1563517 1564110 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein complement(1563517..1564110) Streptococcus pneumoniae JJA 7680501 YP_002736690.1 CDS nadD NC_012466.1 1564110 1564739 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(1564110..1564739) Streptococcus pneumoniae JJA 7678396 YP_002736691.1 CDS SPJ_1644 NC_012466.1 1564791 1565102 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein complement(1564791..1565102) Streptococcus pneumoniae JJA 7679133 YP_002736692.1 CDS SPJ_1645 NC_012466.1 1565317 1566423 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1565317..1566423) Streptococcus pneumoniae JJA 7678751 YP_002736693.1 CDS yqeG NC_012466.1 1566426 1566953 R identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; had superfamily (subfamily iiia) phosphatase complement(1566426..1566953) Streptococcus pneumoniae JJA 7679255 YP_002736694.1 CDS SPJ_1647 NC_012466.1 1566968 1567876 R identified by match to protein family HMM PF01544; CorA - magnesium and cobalt transporter complement(1566968..1567876) Streptococcus pneumoniae JJA 7680034 YP_002736695.1 CDS SPJ_1648 NC_012466.1 1567933 1568493 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel complement(1567933..1568493) Streptococcus pneumoniae JJA 7679932 YP_002736696.1 CDS SPJ_1651 NC_012466.1 1569907 1570860 D identified by match to protein family HMM PF06081; integral membrane protein 1569907..1570860 Streptococcus pneumoniae JJA 7678756 YP_002736697.1 CDS SPJ_1652 NC_012466.1 1571096 1571320 R hypothetical protein complement(1571096..1571320) Streptococcus pneumoniae JJA 7679197 YP_002736698.1 CDS SPJ_1653 NC_012466.1 1571325 1571504 R hypothetical protein complement(1571325..1571504) Streptococcus pneumoniae JJA 7678562 YP_002736699.1 CDS SPJ_1654 NC_012466.1 1571506 1572843 R identified by match to protein family HMM TIGR02919; hypothetical protein complement(1571506..1572843) Streptococcus pneumoniae JJA 7680149 YP_002736700.1 CDS SPJ_1655 NC_012466.1 1572836 1574347 R identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918; hypothetical protein complement(1572836..1574347) Streptococcus pneumoniae JJA 7678957 YP_002736701.1 CDS SPJ_1656 NC_012466.1 1574359 1576731 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1574359..1576731) Streptococcus pneumoniae JJA 7678453 YP_002736702.1 CDS SPJ_1657 NC_012466.1 1576724 1577164 R accessory secretory protein Asp3 complement(1576724..1577164) Streptococcus pneumoniae JJA 7678813 YP_002736703.1 CDS SPJ_1658 NC_012466.1 1577161 1578696 R accessory secretory protein Asp2 complement(1577161..1578696) Streptococcus pneumoniae JJA 7680512 YP_002736704.1 CDS SPJ_1659 NC_012466.1 1578680 1580260 R accessory secretory protein Asp1 complement(1578680..1580260) Streptococcus pneumoniae JJA 7679632 YP_002736705.1 CDS secY NC_012466.1 1580270 1581487 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1580270..1581487) Streptococcus pneumoniae JJA 7679301 YP_002736706.1 CDS SPJ_1661 NC_012466.1 1581544 1582449 R identified by match to protein family HMM PF00535; glycosyl transferase, family 2 complement(1581544..1582449) Streptococcus pneumoniae JJA 7680078 YP_002736707.1 CDS SPJ_1662 NC_012466.1 1582449 1583645 R identified by match to protein family HMM PF01501; glycosyl transferase, family 8 complement(1582449..1583645) Streptococcus pneumoniae JJA 7679652 YP_002736708.1 CDS SPJ_1663 NC_012466.1 1583654 1584874 R identified by match to protein family HMM PF01501; glycosyl transferase, family 8 complement(1583654..1584874) Streptococcus pneumoniae JJA 7679930 YP_002736709.1 CDS SPJ_1664 NC_012466.1 1584905 1587349 R identified by match to protein family HMM PF01501; match to protein family HMM PF08759; glycosyl transferase, family 8 complement(1584905..1587349) Streptococcus pneumoniae JJA 7678417 YP_002736710.1 CDS SPJ_1665 NC_012466.1 1587359 1588369 R hypothetical protein complement(1587359..1588369) Streptococcus pneumoniae JJA 7680542 YP_002736711.1 CDS SPJ_1666 NC_012466.1 1588398 1589273 R identified by match to protein family HMM PF00535; glycosyl transferase, family 2/glycosyl transferase family 8 complement(1588398..1589273) Streptococcus pneumoniae JJA 7679949 YP_002736712.1 CDS SPJ_1667 NC_012466.1 1589278 1590492 R identified by match to protein family HMM PF01501; glycosyl transferase, family 8 complement(1589278..1590492) Streptococcus pneumoniae JJA 7679349 YP_002736713.1 CDS SPJ_1668 NC_012466.1 1590799 1592883 R identified by match to protein family HMM PF00535; match to protein family HMM PF01501; glycosyl transferase, family 2/glycosyl transferase family 8 complement(1590799..1592883) Streptococcus pneumoniae JJA 7679924 YP_002736714.1 CDS SPJ_1670 NC_012466.1 1601569 1602030 R hypothetical protein complement(1601569..1602030) Streptococcus pneumoniae JJA 7678683 YP_002736715.1 CDS SPJ_1671 NC_012466.1 1602409 1602789 D identified by match to protein family HMM PF01047; transcriptional regulator, putative 1602409..1602789 Streptococcus pneumoniae JJA 7679911 YP_002736716.1 CDS SPJ_1672 NC_012466.1 1602888 1603109 D hypothetical protein 1602888..1603109 Streptococcus pneumoniae JJA 7679451 YP_002736717.1 CDS trx NC_012466.1 1603126 1603440 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1603126..1603440 Streptococcus pneumoniae JJA 7678668 YP_002736718.1 CDS SPJ_1674 NC_012466.1 1603746 1604279 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1603746..1604279 Streptococcus pneumoniae JJA 7680421 YP_002736719.1 CDS SPJ_1675 NC_012466.1 1604291 1604668 D identified by Glimmer3; putative; hypothetical protein 1604291..1604668 Streptococcus pneumoniae JJA 7679799 YP_002736720.1 CDS SPJ_1676 NC_012466.1 1604758 1605426 R identified by match to protein family HMM PF00230; aquaporin Z - water channel protein complement(1604758..1605426) Streptococcus pneumoniae JJA 7680202 YP_002736721.1 CDS SPJ_1677 NC_012466.1 1605537 1606091 R hypothetical protein complement(1605537..1606091) Streptococcus pneumoniae JJA 7678769 YP_002736722.1 CDS SPJ_1678 NC_012466.1 1606159 1606314 R identified by Glimmer3; putative; hypothetical protein complement(1606159..1606314) Streptococcus pneumoniae JJA 7679447 YP_002736723.1 CDS pepF2 NC_012466.1 1606337 1608133 R identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181; oligoendopeptidase F complement(1606337..1608133) Streptococcus pneumoniae JJA 7679962 YP_002736724.1 CDS SPJ_1680 NC_012466.1 1608144 1608887 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1608144..1608887) Streptococcus pneumoniae JJA 7679619 YP_002736725.1 CDS prmA NC_012466.1 1608889 1609839 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1608889..1609839) Streptococcus pneumoniae JJA 7680097 YP_002736726.1 CDS SPJ_1682 NC_012466.1 1609852 1610871 R putative otitis media-associated P41 complement(1609852..1610871) Streptococcus pneumoniae JJA 7678629 YP_002736727.1 CDS SPJ_1683 NC_012466.1 1610922 1613105 R hypothetical protein complement(1610922..1613105) Streptococcus pneumoniae JJA 7679328 YP_002736728.1 CDS SPJ_1684 NC_012466.1 1613167 1614201 R identified by match to protein family HMM PF00004; ATPase of the AAA+ class complement(1613167..1614201) Streptococcus pneumoniae JJA 7679155 YP_002736729.1 CDS SPJ_1685 NC_012466.1 1614311 1614469 R 7,8-dihydro-8-oxoguanine-triphosphatase complement(1614311..1614469) Streptococcus pneumoniae JJA 7679482 YP_002736730.1 CDS SPJ_1686 NC_012466.1 1614450 1615538 R identified by match to protein family HMM PF02163; peptidase, M50 family protein complement(1614450..1615538) Streptococcus pneumoniae JJA 7678682 YP_002736731.1 CDS SPJ_1687 NC_012466.1 1615557 1616027 R hypothetical protein complement(1615557..1616027) Streptococcus pneumoniae JJA 7679672 YP_002736732.1 CDS SPJ_1688 NC_012466.1 1616318 1616770 R identified by match to protein family HMM PF03681; hypothetical protein complement(1616318..1616770) Streptococcus pneumoniae JJA 7680255 YP_002736733.1 CDS SPJ_1689 NC_012466.1 1616807 1616986 R identified by match to protein family HMM PF07927; hypothetical protein complement(1616807..1616986) Streptococcus pneumoniae JJA 7678451 YP_002736734.1 CDS SPJ_1690 NC_012466.1 1617123 1617302 R hypothetical protein complement(1617123..1617302) Streptococcus pneumoniae JJA 7679010 YP_002736735.1 CDS SPJ_1691 NC_012466.1 1617976 1619247 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1617976..1619247 Streptococcus pneumoniae JJA 7679926 YP_002736736.1 CDS SPJ_1693 NC_012466.1 1619794 1621113 R identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase complement(1619794..1621113) Streptococcus pneumoniae JJA 7680593 YP_002736737.1 CDS SPJ_1694 NC_012466.1 1621123 1622739 R identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(1621123..1622739) Streptococcus pneumoniae JJA 7678879 YP_002736738.1 CDS SPJ_1695 NC_012466.1 1622768 1623658 R identified by match to protein family HMM PF00528; protein LplC complement(1622768..1623658) Streptococcus pneumoniae JJA 7679638 YP_002736739.1 CDS SPJ_1696 NC_012466.1 1623669 1624586 R identified by match to protein family HMM PF00528; protein LplB complement(1623669..1624586) Streptococcus pneumoniae JJA 7679831 YP_002736740.1 CDS SPJ_1697 NC_012466.1 1624735 1625736 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; sugar-binding transcriptional regulator, LacI family complement(1624735..1625736) Streptococcus pneumoniae JJA 7679363 YP_002736741.1 CDS SPJ_1698 NC_012466.1 1626098 1627579 R identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280; M protein trans-acting positive transcriptional regulator complement(1626098..1627579) Streptococcus pneumoniae JJA 7679855 YP_002736742.1 CDS SPJ_1699 NC_012466.1 1628022 1628186 D identified by Glimmer3; putative; hypothetical protein 1628022..1628186 Streptococcus pneumoniae JJA 7678410 YP_002736743.1 CDS SPJ_1700 NC_012466.1 1628270 1628836 D hypothetical protein 1628270..1628836 Streptococcus pneumoniae JJA 7678877 YP_002736744.1 CDS SPJ_1701 NC_012466.1 1628848 1629018 D lipoprotein, putative 1628848..1629018 Streptococcus pneumoniae JJA 7679755 YP_002736745.1 CDS SPJ_1702 NC_012466.1 1629057 1629665 D identified by match to protein family HMM PF03780; Gls24 protein 1629057..1629665 Streptococcus pneumoniae JJA 7680233 YP_002736746.1 CDS SPJ_1703 NC_012466.1 1629696 1629899 D identified by match to protein family HMM PF05532; hypothetical protein 1629696..1629899 Streptococcus pneumoniae JJA 7678768 YP_002736747.1 CDS SPJ_1704 NC_012466.1 1630485 1630682 D transposase 1630485..1630682 Streptococcus pneumoniae JJA 7679375 YP_002736748.1 CDS SPJ_1705 NC_012466.1 1630713 1630832 R identified by Glimmer3; putative; hypothetical protein complement(1630713..1630832) Streptococcus pneumoniae JJA 7679701 YP_002736749.1 CDS SPJ_1706 NC_012466.1 1631051 1631821 R identified by match to protein family HMM PF01925; hypothetical protein complement(1631051..1631821) Streptococcus pneumoniae JJA 7680317 YP_002736750.1 CDS SPJ_1707 NC_012466.1 1631836 1632684 R identified by match to protein family HMM PF03781; sulfatase-modifying factor 1 (C-alpha-formyglycine-generating enzyme 1) complement(1631836..1632684) Streptococcus pneumoniae JJA 7679590 YP_002736751.1 CDS SPJ_1708 NC_012466.1 1632681 1634156 R can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase; arylsulfatase complement(1632681..1634156) Streptococcus pneumoniae JJA 7680210 YP_002736752.1 CDS SPJ_1709 NC_012466.1 1634479 1635834 R identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; phosphotransferase system complement(1634479..1635834) Streptococcus pneumoniae JJA 7680095 YP_002736753.1 CDS SPJ_1710 NC_012466.1 1635844 1636161 R identified by match to protein family HMM PF02255; lichenan-specific phosphotransferase enzyme iia component (pts system lichenan-specific eiia component) (eiia-lic) (eiii-lic) complement(1635844..1636161) Streptococcus pneumoniae JJA 7678502 YP_002736754.1 CDS SPJ_1711 NC_012466.1 1636178 1636495 R identified by match to protein family HMM PF02302; lichenan-specific phosphotransferase enzyme iib component (pts system lichenan-specific eiib component) (eiib-lic) complement(1636178..1636495) Streptococcus pneumoniae JJA 7679399 YP_002736755.1 CDS SPJ_1712 NC_012466.1 1636510 1637406 R hypothetical protein complement(1636510..1637406) Streptococcus pneumoniae JJA 7679880 YP_002736756.1 CDS SPJ_1713 NC_012466.1 1637409 1638671 R identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; lichenan permease iic component (pts system lichenan-specific eiiccomponent) (eiic-lic) complement(1637409..1638671) Streptococcus pneumoniae JJA 7679791 YP_002736757.1 CDS SPJ_1714 NC_012466.1 1638951 1640129 D identified by match to protein family HMM PF00480; ROK family protein, putative 1638951..1640129 Streptococcus pneumoniae JJA 7678634 YP_002736758.1 CDS SPJ_1715 NC_012466.1 1640357 1640803 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1640357..1640803) Streptococcus pneumoniae JJA 7679090 YP_002736759.1 CDS SPJ_1716 NC_012466.1 1640873 1641532 D identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type 4 prepilin peptidase 1640873..1641532 Streptococcus pneumoniae JJA 7679568 YP_002736760.1 CDS SPJ_1717 NC_012466.1 1641584 1642735 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; transcriptional regulator complement(1641584..1642735) Streptococcus pneumoniae JJA 7680045 YP_002736761.1 CDS SPJ_1718 NC_012466.1 1642750 1643481 R hypothetical protein complement(1642750..1643481) Streptococcus pneumoniae JJA 7680479 YP_002736762.1 CDS trpA NC_012466.1 1643783 1644559 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1643783..1644559) Streptococcus pneumoniae JJA 7678416 YP_002736763.1 CDS trpB NC_012466.1 1644552 1645775 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1644552..1645775) Streptococcus pneumoniae JJA 7680278 YP_002736764.1 CDS trpF NC_012466.1 1645753 1646352 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(1645753..1646352) Streptococcus pneumoniae JJA 7679679 YP_002736765.1 CDS trpC NC_012466.1 1646339 1647106 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(1646339..1647106) Streptococcus pneumoniae JJA 7679310 YP_002736766.1 CDS trpD NC_012466.1 1647103 1648107 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1647103..1648107) Streptococcus pneumoniae JJA 7678890 YP_002736767.1 CDS SPJ_1724 NC_012466.1 1648118 1648684 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1648118..1648684) Streptococcus pneumoniae JJA 7680481 YP_002736768.1 CDS trpE NC_012466.1 1648681 1650042 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1648681..1650042) Streptococcus pneumoniae JJA 7679003 YP_002736769.1 CDS SPJ_1726 NC_012466.1 1650451 1650711 R identified by Glimmer3; putative; hypothetical protein complement(1650451..1650711) Streptococcus pneumoniae JJA 7678435 YP_002736770.1 CDS SPJ_1727 NC_012466.1 1651319 1652320 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; catabolite control protein complement(1651319..1652320) Streptococcus pneumoniae JJA 7679074 YP_002736771.1 CDS SPJ_1728 NC_012466.1 1652428 1652796 R hypothetical protein complement(1652428..1652796) Streptococcus pneumoniae JJA 7678616 YP_002736772.1 CDS SPJ_1729 NC_012466.1 1652892 1653602 R identified by match to protein family HMM PF02308; putative Mg2+ transporter-C (MgtC) family protein complement(1652892..1653602) Streptococcus pneumoniae JJA 7680182 YP_002736773.1 CDS SPJ_1730 NC_012466.1 1653605 1655296 R identified by match to protein family HMM PF00528; binding-protein-dependent transport systems inner membrane component complement(1653605..1655296) Streptococcus pneumoniae JJA 7679636 YP_002736774.1 CDS SPJ_1731 NC_012466.1 1655308 1656318 R identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; spermidine/putrescine import ATP-binding protein PotA complement(1655308..1656318) Streptococcus pneumoniae JJA 7679005 YP_002736775.1 CDS SPJ_1732 NC_012466.1 1656421 1657488 R ABC transporter substrate-binding protein complement(1656421..1657488) Streptococcus pneumoniae JJA 7678928 YP_002736776.1 CDS SPJ_1733 NC_012466.1 1657513 1658172 R identified by match to protein family HMM PF08975; hypothetical protein complement(1657513..1658172) Streptococcus pneumoniae JJA 7680130 YP_002736777.1 CDS SPJ_1734 NC_012466.1 1658300 1658413 R hypothetical protein complement(1658300..1658413) Streptococcus pneumoniae JJA 7679863 YP_002736778.1 CDS galE2 NC_012466.1 1658382 1659362 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(1658382..1659362) Streptococcus pneumoniae JJA 7679225 YP_002736779.1 CDS galT1 NC_012466.1 1659375 1660850 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(1659375..1660850) Streptococcus pneumoniae JJA 7679139 YP_002736780.1 CDS SPJ_1737 NC_012466.1 1660863 1661504 R identified by match to protein family HMM PF01895; PhoU family complement(1660863..1661504) Streptococcus pneumoniae JJA 7679309 YP_002736781.1 CDS SPJ_1738 NC_012466.1 1661562 1661963 R hypothetical protein complement(1661562..1661963) Streptococcus pneumoniae JJA 7678670 YP_002736782.1 CDS SPJ_1739 NC_012466.1 1662117 1662413 R hypothetical protein complement(1662117..1662413) Streptococcus pneumoniae JJA 7680086 YP_002736783.1 CDS SPJ_1740 NC_012466.1 1662397 1664523 R identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1662397..1664523) Streptococcus pneumoniae JJA 7679660 YP_002736784.1 CDS SPJ_1741 NC_012466.1 1665469 1665645 D hypothetical protein 1665469..1665645 Streptococcus pneumoniae JJA 7679402 YP_002736785.1 CDS SPJ_1742 NC_012466.1 1665687 1666913 R identified by match to protein family HMM PF01041; Cps7G complement(1665687..1666913) Streptococcus pneumoniae JJA 7678907 YP_002736786.1 CDS SPJ_1743 NC_012466.1 1666956 1667648 R identified by match to protein family HMM PF02397; sugar transferase family protein complement(1666956..1667648) Streptococcus pneumoniae JJA 7678576 YP_002736787.1 CDS SPJ_1744 NC_012466.1 1667821 1669572 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(1667821..1669572) Streptococcus pneumoniae JJA 7680168 YP_002736788.1 CDS SPJ_1745 NC_012466.1 1669562 1671307 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein complement(1669562..1671307) Streptococcus pneumoniae JJA 7679881 YP_002736789.1 CDS SPJ_1746 NC_012466.1 1671513 1671890 R identified by match to protein family HMM PF04239; hypothetical protein complement(1671513..1671890) Streptococcus pneumoniae JJA 7679092 YP_002736790.1 CDS SPJ_1747 NC_012466.1 1671962 1672237 R identified by Glimmer3; putative; hypothetical protein complement(1671962..1672237) Streptococcus pneumoniae JJA 7679689 YP_002736791.1 CDS SPJ_1748 NC_012466.1 1672191 1672418 R identified by Glimmer3; putative; hypothetical protein complement(1672191..1672418) Streptococcus pneumoniae JJA 7679897 YP_002736792.1 CDS xth NC_012466.1 1672552 1673379 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1672552..1673379 Streptococcus pneumoniae JJA 7679777 YP_002736793.1 CDS xpt NC_012466.1 1674651 1675232 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1674651..1675232 Streptococcus pneumoniae JJA 7678817 YP_002736794.1 CDS SPJ_1753 NC_012466.1 1675232 1676494 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine permease 1675232..1676494 Streptococcus pneumoniae JJA 7679453 YP_002736795.1 CDS SPJ_1754 NC_012466.1 1676545 1677006 R protein DpnD complement(1676545..1677006) Streptococcus pneumoniae JJA 7679520 YP_002736796.1 CDS SPJ_1755 NC_012466.1 1677003 1677767 R identified by match to protein family HMM PF06044; type II restriction enzyme complement(1677003..1677767) Streptococcus pneumoniae JJA 7680208 YP_002736797.1 CDS SPJ_1756 NC_012466.1 1677948 1678352 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein complement(1677948..1678352) Streptococcus pneumoniae JJA 7678482 YP_002736798.1 CDS galT2 NC_012466.1 1678422 1679903 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(1678422..1679903) Streptococcus pneumoniae JJA 7679807 YP_002736799.1 CDS galK NC_012466.1 1679922 1681100 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(1679922..1681100) Streptococcus pneumoniae JJA 7679467 YP_002736800.1 CDS SPJ_1759 NC_012466.1 1681265 1682272 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; GalR, member of GalR-LacI family of transcriptional regulators, binds DNA; regulator of gal operon 1681265..1682272 Streptococcus pneumoniae JJA 7678763 YP_002736801.1 CDS SPJ_1760 NC_012466.1 1682318 1683355 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; alcohol dehydrogenase, zinc-containing complement(1682318..1683355) Streptococcus pneumoniae JJA 7680212 YP_002736802.1 CDS SPJ_1761 NC_012466.1 1683356 1683709 R identified by match to protein family HMM PF00376; transcriptional regulator, MerR family complement(1683356..1683709) Streptococcus pneumoniae JJA 7679117 YP_002736803.1 CDS SPJ_1762 NC_012466.1 1683953 1684843 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator transporter - heavy metal transport complement(1683953..1684843) Streptococcus pneumoniae JJA 7680415 YP_002736804.1 CDS SPJ_1763 NC_012466.1 1684976 1685512 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1684976..1685512 Streptococcus pneumoniae JJA 7680438 YP_002736805.1 CDS SPJ_1764 NC_012466.1 1685678 1686484 R identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter complement(1685678..1686484) Streptococcus pneumoniae JJA 7679996 YP_002736806.1 CDS SPJ_1765 NC_012466.1 1686655 1686771 R identified by Glimmer3; putative; hypothetical protein complement(1686655..1686771) Streptococcus pneumoniae JJA 7678861 YP_002736807.1 CDS SPJ_1766 NC_012466.1 1686829 1688349 R identified by match to protein family HMM PF00528; match to protein family HMM PF04069; choline ABC transporter permease complement(1686829..1688349) Streptococcus pneumoniae JJA 7680311 YP_002736808.1 CDS SPJ_1767 NC_012466.1 1688342 1689070 R identified by match to protein family HMM PF00005; choline transport ATP-binding protein opuBA complement(1688342..1689070) Streptococcus pneumoniae JJA 7679359 YP_002736809.1 CDS SPJ_1768 NC_012466.1 1689085 1689849 R identified by match to protein family HMM PF07366; hypothetical protein complement(1689085..1689849) Streptococcus pneumoniae JJA 7678922 YP_002736810.1 CDS SPJ_1769 NC_012466.1 1689853 1690296 R identified by match to protein family HMM PF01047; transcriptional regulator, MarR family complement(1689853..1690296) Streptococcus pneumoniae JJA 7679754 YP_002736811.1 CDS SPJ_1770 NC_012466.1 1690978 1691274 R identified by match to protein family HMM PF08957; hypothetical protein complement(1690978..1691274) Streptococcus pneumoniae JJA 7678975 YP_002736812.1 CDS pepA NC_012466.1 1691296 1692360 R identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107; glutamyl aminopeptidase complement(1691296..1692360) Streptococcus pneumoniae JJA 7680302 YP_002736813.1 CDS SPJ_1772 NC_012466.1 1692480 1692602 D hypothetical protein 1692480..1692602 Streptococcus pneumoniae JJA 7679830 YP_002736814.1 CDS SPJ_1774 NC_012466.1 1693885 1694844 D identified by match to protein family HMM PF01032; Fe3+ ABC transporter permease 1693885..1694844 Streptococcus pneumoniae JJA 7679472 YP_002736815.1 CDS SPJ_1775 NC_012466.1 1694834 1695790 D identified by match to protein family HMM PF01032; Fe3+ ABC transporter permease 1694834..1695790 Streptococcus pneumoniae JJA 7678854 YP_002736816.1 CDS SPJ_1776 NC_012466.1 1695787 1696539 D identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC 1695787..1696539 Streptococcus pneumoniae JJA 7680052 YP_002736817.1 CDS SPJ_1777 NC_012466.1 1696635 1697600 D identified by match to protein family HMM PF01497; iron-compound ABC transporter, iron-compound-binding protein 1696635..1697600 Streptococcus pneumoniae JJA 7678525 YP_002736818.1 CDS SPJ_1778 NC_012466.1 1697825 1698067 R identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(1697825..1698067) Streptococcus pneumoniae JJA 7680240 YP_002736819.1 CDS rluB NC_012466.1 1698067 1698789 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1698067..1698789) Streptococcus pneumoniae JJA 7680354 YP_002736820.1 CDS scpB NC_012466.1 1698776 1699345 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(1698776..1699345) Streptococcus pneumoniae JJA 7679899 YP_002736821.1 CDS scpA NC_012466.1 1699364 1700092 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(1699364..1700092) Streptococcus pneumoniae JJA 7680326 YP_002736822.1 CDS xerD NC_012466.1 1700092 1700832 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD-like protein complement(1700092..1700832) Streptococcus pneumoniae JJA 7679858 YP_002736823.1 CDS SPJ_1783 NC_012466.1 1700823 1701284 R identified by match to protein family HMM PF00571; CBS domain protein complement(1700823..1701284) Streptococcus pneumoniae JJA 7679366 YP_002736824.1 CDS SPJ_1784 NC_012466.1 1701281 1701802 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase, family complement(1701281..1701802) Streptococcus pneumoniae JJA 7678885 YP_002736825.1 CDS SPJ_1785 NC_012466.1 1701778 1702749 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase/hypothetical protein complement(1701778..1702749) Streptococcus pneumoniae JJA 7680235 YP_002736826.1 CDS murI NC_012466.1 1702746 1703540 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1702746..1703540) Streptococcus pneumoniae JJA 7680403 YP_002736827.1 CDS SPJ_1787 NC_012466.1 1703747 1703995 R identified by match to protein family HMM PF03672; hypothetical protein complement(1703747..1703995) Streptococcus pneumoniae JJA 7679718 YP_002736828.1 CDS treC NC_012466.1 1704251 1705876 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase complement(1704251..1705876) Streptococcus pneumoniae JJA 7680125 YP_002736829.1 CDS treP NC_012466.1 1706054 1708021 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992; pts system, trehalose-specific iibc component complement(1706054..1708021) Streptococcus pneumoniae JJA 7679610 YP_002736830.1 CDS treR NC_012466.1 1708206 1708916 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 1708206..1708916 Streptococcus pneumoniae JJA 7680121 YP_002736831.1 CDS SPJ_1791 NC_012466.1 1708949 1709752 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1708949..1709752) Streptococcus pneumoniae JJA 7678926 YP_002736832.1 CDS SPJ_1792 NC_012466.1 1709765 1710658 R identified by match to protein family HMM PF02653; ABC transporter permease complement(1709765..1710658) Streptococcus pneumoniae JJA 7679258 YP_002736833.1 CDS SPJ_1793 NC_012466.1 1710670 1711479 R identified by match to protein family HMM PF04392; ribose/xylose/arabinose/galactoside ABC-type transport system, permease component complement(1710670..1711479) Streptococcus pneumoniae JJA 7679893 YP_002736834.1 CDS SPJ_1794 NC_012466.1 1711572 1711700 D identified by Glimmer3; putative; hypothetical protein 1711572..1711700 Streptococcus pneumoniae JJA 7679677 YP_002736835.1 CDS SPJ_1795 NC_012466.1 1711900 1712031 R identified by Glimmer3; putative; hypothetical protein complement(1711900..1712031) Streptococcus pneumoniae JJA 7680270 YP_002736836.1 CDS SPJ_1796 NC_012466.1 1712097 1713023 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; oligopeptide transport ATP-binding protein AmiF complement(1712097..1713023) Streptococcus pneumoniae JJA 7678655 YP_002736837.1 CDS SPJ_1797 NC_012466.1 1713034 1714101 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transport ATP-binding protein OppD complement(1713034..1714101) Streptococcus pneumoniae JJA 7679268 YP_002736838.1 CDS SPJ_1798 NC_012466.1 1714110 1715036 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AmiD complement(1714110..1715036) Streptococcus pneumoniae JJA 7678734 YP_002736839.1 CDS SPJ_1799 NC_012466.1 1715036 1716532 R identified by match to protein family HMM PF00528; oligopeptide transport system permease protein AmiC complement(1715036..1716532) Streptococcus pneumoniae JJA 7680384 YP_002736840.1 CDS SPJ_1800 NC_012466.1 1716599 1718578 R identified by match to protein family HMM PF00496; AmiA protein complement(1716599..1718578) Streptococcus pneumoniae JJA 7680008 YP_002736841.1 CDS SPJ_1801 NC_012466.1 1719264 1720457 R identified by match to protein family HMM PF04932; O-antigen polymerase family complement(1719264..1720457) Streptococcus pneumoniae JJA 7680466 YP_002736842.1 CDS SPJ_1802 NC_012466.1 1720595 1722037 R identified by match to protein family HMM PF00128; sucrose phosphorylase (Sucrose glucosyltransferase)(Glucosyltransferase-A) (GTF-A) complement(1720595..1722037) Streptococcus pneumoniae JJA 7680022 YP_002736843.1 CDS SPJ_1803 NC_012466.1 1722221 1722388 R hypothetical protein complement(1722221..1722388) Streptococcus pneumoniae JJA 7678939 YP_002736844.1 CDS SPJ_1804 NC_012466.1 1722395 1723228 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(1722395..1723228) Streptococcus pneumoniae JJA 7678481 YP_002736845.1 CDS SPJ_1805 NC_012466.1 1723242 1724108 R identified by match to protein family HMM PF00528; sugar ABC transporter permease complement(1723242..1724108) Streptococcus pneumoniae JJA 7680211 YP_002736846.1 CDS SPJ_1806 NC_012466.1 1724122 1725381 R identified by match to protein family HMM PF01547; sugar ABC transporter substrate-binding protein complement(1724122..1725381) Streptococcus pneumoniae JJA 7680328 YP_002736847.1 CDS SPJ_1807 NC_012466.1 1725473 1727635 R identified by match to protein family HMM PF02065; alpha-galactosidase AgaN complement(1725473..1727635) Streptococcus pneumoniae JJA 7679113 YP_002736848.1 CDS SPJ_1808 NC_012466.1 1727743 1728603 D identified by match to protein family HMM PF00165; match to protein family HMM PF02311; Msm operon regulatory protein 1727743..1728603 Streptococcus pneumoniae JJA 7679612 YP_002736849.1 CDS SPJ_1809 NC_012466.1 1728600 1729535 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1728600..1729535 Streptococcus pneumoniae JJA 7679056 YP_002736850.1 CDS SPJ_1810 NC_012466.1 1729786 1730568 D identified by match to protein family HMM PF01610; transposase 1729786..1730568 Streptococcus pneumoniae JJA 7679744 YP_002736851.1 CDS SPJ_1811 NC_012466.1 1730565 1731083 D transposase 1730565..1731083 Streptococcus pneumoniae JJA 7680537 YP_002736852.1 CDS rumA2 NC_012466.1 1737927 1739282 R identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(1737927..1739282) Streptococcus pneumoniae JJA 7680570 YP_002736853.1 CDS recX NC_012466.1 1739320 1740096 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1739320..1740096 Streptococcus pneumoniae JJA 7679989 YP_002736854.1 CDS SPJ_1836 NC_012466.1 1740185 1740718 D identified by match to protein family HMM PF04167; hypothetical protein 1740185..1740718 Streptococcus pneumoniae JJA 7679725 YP_002736855.1 CDS SPJ_1837 NC_012466.1 1741076 1741282 R identified by match to protein family HMM PF01610; hypothetical protein complement(1741076..1741282) Streptococcus pneumoniae JJA 7680219 YP_002736856.1 CDS SPJ_1838 NC_012466.1 1741442 1742224 D identified by match to protein family HMM PF01610; transposase 1741442..1742224 Streptococcus pneumoniae JJA 7678934 YP_002736857.1 CDS SPJ_1839 NC_012466.1 1742221 1742748 D transposase 1742221..1742748 Streptococcus pneumoniae JJA 7680475 YP_002736858.1 CDS groEL NC_012466.1 1742847 1744469 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1742847..1744469) Streptococcus pneumoniae JJA 7679997 YP_002736859.1 CDS groES NC_012466.1 1744485 1744769 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1744485..1744769) Streptococcus pneumoniae JJA 7678946 YP_002736860.1 CDS SPJ_1842 NC_012466.1 1744925 1745302 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1744925..1745302) Streptococcus pneumoniae JJA 7678446 YP_002736861.1 CDS SPJ_1843 NC_012466.1 1745329 1745571 R identified by Glimmer3; putative; hypothetical protein complement(1745329..1745571) Streptococcus pneumoniae JJA 7680185 YP_002736862.1 CDS SPJ_1844 NC_012466.1 1745803 1746759 R identified by match to protein family HMM PF01473; match to protein family HMM PF01510; autolysin (N-acetylmuramoyl-L-alanine amidase) (Mureinhydrolase) (Mucopeptide aminohydrolase) (Cell wall hydrolase) complement(1745803..1746759) Streptococcus pneumoniae JJA 7679694 YP_002736863.1 CDS SPJ_1845 NC_012466.1 1746765 1747094 R identified by match to protein family HMM TIGR01673; phage holin, LL-H family complement(1746765..1747094) Streptococcus pneumoniae JJA 7678665 YP_002736864.1 CDS SPJ_1846 NC_012466.1 1747098 1747397 R hypothetical protein complement(1747098..1747397) Streptococcus pneumoniae JJA 7680491 YP_002736865.1 CDS SPJ_1847 NC_012466.1 1747407 1747757 R hypothetical protein complement(1747407..1747757) Streptococcus pneumoniae JJA 7679958 YP_002736866.1 CDS SPJ_1848 NC_012466.1 1747760 1747963 R hypothetical protein complement(1747760..1747963) Streptococcus pneumoniae JJA 7679550 YP_002736867.1 CDS SPJ_1849 NC_012466.1 1747944 1748060 R identified by Glimmer3; putative; hypothetical protein complement(1747944..1748060) Streptococcus pneumoniae JJA 7678991 YP_002736868.1 CDS SPJ_1850 NC_012466.1 1748057 1754383 R identified by match to protein family HMM PF02018; PblB complement(1748057..1754383) Streptococcus pneumoniae JJA 7678871 YP_002736869.1 CDS SPJ_1851 NC_012466.1 1754388 1754738 R hypothetical protein complement(1754388..1754738) Streptococcus pneumoniae JJA 7678857 YP_002736870.1 CDS SPJ_1852 NC_012466.1 1754747 1758400 R TMP repeat family complement(1754747..1758400) Streptococcus pneumoniae JJA 7679507 YP_002736871.1 CDS SPJ_1853 NC_012466.1 1758387 1758737 R identified by Glimmer3; putative; hypothetical protein complement(1758387..1758737) Streptococcus pneumoniae JJA 7679027 YP_002736872.1 CDS SPJ_1854 NC_012466.1 1758776 1759156 R hypothetical protein complement(1758776..1759156) Streptococcus pneumoniae JJA 7678643 YP_002736873.1 CDS SPJ_1855 NC_012466.1 1759161 1759574 R major tail protein, putative complement(1759161..1759574) Streptococcus pneumoniae JJA 7678604 YP_002736874.1 CDS SPJ_1856 NC_012466.1 1759577 1759945 R conserved structural protein, putative complement(1759577..1759945) Streptococcus pneumoniae JJA 7680359 YP_002736875.1 CDS SPJ_1857 NC_012466.1 1759942 1760268 R hypothetical protein complement(1759942..1760268) Streptococcus pneumoniae JJA 7679885 YP_002736876.1 CDS SPJ_1858 NC_012466.1 1760432 1760734 R identified by Glimmer3; putative; hypothetical protein complement(1760432..1760734) Streptococcus pneumoniae JJA 7679720 YP_002736877.1 CDS SPJ_1859 NC_012466.1 1760751 1761062 R hypothetical protein complement(1760751..1761062) Streptococcus pneumoniae JJA 7679019 YP_002736878.1 CDS SPJ_1860 NC_012466.1 1761064 1761252 R identified by Glimmer3; putative; hypothetical protein complement(1761064..1761252) Streptococcus pneumoniae JJA 7679663 YP_002736879.1 CDS SPJ_1861 NC_012466.1 1761242 1761424 R identified by match to protein family HMM PF07498; transcription termination factor complement(1761242..1761424) Streptococcus pneumoniae JJA 7678782 YP_002736880.1 CDS SPJ_1862 NC_012466.1 1761436 1762281 R MHP complement(1761436..1762281) Streptococcus pneumoniae JJA 7679274 YP_002736881.1 CDS SPJ_1863 NC_012466.1 1762287 1762871 R phage scaffold protein complement(1762287..1762871) Streptococcus pneumoniae JJA 7679373 YP_002736882.1 CDS SPJ_1864 NC_012466.1 1763088 1763339 R gp37 complement(1763088..1763339) Streptococcus pneumoniae JJA 7679839 YP_002736883.1 CDS SPJ_1865 NC_012466.1 1763341 1763586 R hypothetical protein complement(1763341..1763586) Streptococcus pneumoniae JJA 7680165 YP_002736884.1 CDS SPJ_1866 NC_012466.1 1763629 1764042 R identified by match to protein family HMM PF01966; metal dependent phosphohydrolase, HD region complement(1763629..1764042) Streptococcus pneumoniae JJA 7678423 YP_002736885.1 CDS SPJ_1867 NC_012466.1 1764039 1764248 R identified by Glimmer3; putative; hypothetical protein complement(1764039..1764248) Streptococcus pneumoniae JJA 7678572 YP_002736886.1 CDS SPJ_1868 NC_012466.1 1764250 1765833 R identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641; phage putative head morphogenesis protein, SPP1 gp7 family complement(1764250..1765833) Streptococcus pneumoniae JJA 7679653 YP_002736887.1 CDS SPJ_1869 NC_012466.1 1765796 1767097 R identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538; phage portal protein, SPP1 family complement(1765796..1767097) Streptococcus pneumoniae JJA 7679320 YP_002736888.1 CDS SPJ_1870 NC_012466.1 1767277 1768575 R identified by match to protein family HMM PF04466; match to protein family HMM PF07570; match to protein family HMM TIGR01547; phage terminase, large subunit, pbsx family complement(1767277..1768575) Streptococcus pneumoniae JJA 7678712 YP_002736889.1 CDS SPJ_1871 NC_012466.1 1768553 1769053 R identified by match to protein family HMM PF03592; phage terminase small subunit complement(1768553..1769053) Streptococcus pneumoniae JJA 7680534 YP_002736890.1 CDS SPJ_1873 NC_012466.1 1769461 1769865 R phage protein complement(1769461..1769865) Streptococcus pneumoniae JJA 7680561 YP_002736891.1 CDS SPJ_1874 NC_012466.1 1770306 1770743 R identified by match to protein family HMM TIGR01671; hypothetical protein complement(1770306..1770743) Streptococcus pneumoniae JJA 7679434 YP_002736892.1 CDS SPJ_1875 NC_012466.1 1770755 1771177 R hypothetical protein complement(1770755..1771177) Streptococcus pneumoniae JJA 7678949 YP_002736893.1 CDS SPJ_1876 NC_012466.1 1771431 1771592 R identified by Glimmer3; putative; hypothetical protein complement(1771431..1771592) Streptococcus pneumoniae JJA 7678623 YP_002736894.1 CDS SPJ_1877 NC_012466.1 1771592 1772284 R identified by match to protein family HMM PF07852; hypothetical protein complement(1771592..1772284) Streptococcus pneumoniae JJA 7679904 YP_002736895.1 CDS SPJ_1878 NC_012466.1 1772286 1772603 R gp24 complement(1772286..1772603) Streptococcus pneumoniae JJA 7679665 YP_002736896.1 CDS SPJ_1879 NC_012466.1 1772826 1773257 R identified by match to protein family HMM PF05866; holliday junction resolvase complement(1772826..1773257) Streptococcus pneumoniae JJA 7679668 YP_002736897.1 CDS SPJ_1880 NC_012466.1 1773254 1773652 R phage protein complement(1773254..1773652) Streptococcus pneumoniae JJA 7679576 YP_002736898.1 CDS SPJ_1881 NC_012466.1 1773665 1774081 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family complement(1773665..1774081) Streptococcus pneumoniae JJA 7680044 YP_002736899.1 CDS SPJ_1882 NC_012466.1 1774078 1774194 R hypothetical protein complement(1774078..1774194) Streptococcus pneumoniae JJA 7678657 YP_002736900.1 CDS SPJ_1883 NC_012466.1 1774504 1774992 R identified by Glimmer3; putative; hypothetical protein complement(1774504..1774992) Streptococcus pneumoniae JJA 7679119 YP_002736901.1 CDS SPJ_1884 NC_012466.1 1774995 1776059 R identified by match to protein family HMM PF07083; phage protein complement(1774995..1776059) Streptococcus pneumoniae JJA 7680268 YP_002736902.1 CDS bet NC_012466.1 1776069 1776887 R identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; phage recombination protein Bet complement(1776069..1776887) Streptococcus pneumoniae JJA 7678688 YP_002736903.1 CDS SPJ_1886 NC_012466.1 1776924 1777040 R hypothetical protein complement(1776924..1777040) Streptococcus pneumoniae JJA 7679344 YP_002736904.1 CDS SPJ_1887 NC_012466.1 1777157 1777417 R identified by Glimmer3; putative; hypothetical protein complement(1777157..1777417) Streptococcus pneumoniae JJA 7679956 YP_002736905.1 CDS SPJ_1888 NC_012466.1 1777430 1777684 R identified by Glimmer3; putative; hypothetical protein complement(1777430..1777684) Streptococcus pneumoniae JJA 7679817 YP_002736906.1 CDS SPJ_1889 NC_012466.1 1777685 1777906 R identified by Glimmer3; putative; hypothetical protein complement(1777685..1777906) Streptococcus pneumoniae JJA 7680417 YP_002736907.1 CDS SPJ_1890 NC_012466.1 1777906 1778043 R identified by Glimmer3; putative; hypothetical protein complement(1777906..1778043) Streptococcus pneumoniae JJA 7678696 YP_002736908.1 CDS SPJ_1891 NC_012466.1 1778061 1778858 R identified by Glimmer3; putative; hypothetical protein complement(1778061..1778858) Streptococcus pneumoniae JJA 7679184 YP_002736909.1 CDS SPJ_1892 NC_012466.1 1778925 1779068 R identified by Glimmer3; putative; hypothetical protein complement(1778925..1779068) Streptococcus pneumoniae JJA 7679680 YP_002736910.1 CDS SPJ_1894 NC_012466.1 1779185 1779409 D hypothetical protein 1779185..1779409 Streptococcus pneumoniae JJA 7680159 YP_002736911.1 CDS SPJ_1893 NC_012466.1 1779406 1779588 R hypothetical protein complement(1779406..1779588) Streptococcus pneumoniae JJA 7679968 YP_002736912.1 CDS SPJ_1895 NC_012466.1 1779773 1780051 R phage replication protein complement(1779773..1780051) Streptococcus pneumoniae JJA 7678447 YP_002736913.1 CDS SPJ_1896 NC_012466.1 1780218 1780454 R phage protein complement(1780218..1780454) Streptococcus pneumoniae JJA 7678865 YP_002736914.1 CDS SPJ_1897 NC_012466.1 1780528 1780734 D identified by Glimmer3; putative; hypothetical protein 1780528..1780734 Streptococcus pneumoniae JJA 7680331 YP_002736915.1 CDS SPJ_1899 NC_012466.1 1781135 1781584 D phage protein 1781135..1781584 Streptococcus pneumoniae JJA 7679827 YP_002736916.1 CDS SPJ_1898 NC_012466.1 1781575 1781706 R identified by Glimmer3; putative; hypothetical protein complement(1781575..1781706) Streptococcus pneumoniae JJA 7679218 YP_002736917.1 CDS SPJ_1900 NC_012466.1 1781817 1782092 R hypothetical protein complement(1781817..1782092) Streptococcus pneumoniae JJA 7678762 YP_002736918.1 CDS SPJ_1901 NC_012466.1 1782253 1783005 D identified by match to protein family HMM PF00717; match to protein family HMM PF01381; cI repressor 1782253..1783005 Streptococcus pneumoniae JJA 7678725 YP_002736919.1 CDS SPJ_1902 NC_012466.1 1783143 1783313 R identified by Glimmer3; putative; hypothetical protein complement(1783143..1783313) Streptococcus pneumoniae JJA 7680486 YP_002736920.1 CDS SPJ_1903 NC_012466.1 1783389 1784816 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; INT 1783389..1784816 Streptococcus pneumoniae JJA 7680010 YP_002736921.1 CDS SPJ_1904 NC_012466.1 1784952 1785713 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; oxidoreductase, short chain dehydrogenase/reductase family complement(1784952..1785713) Streptococcus pneumoniae JJA 7678963 YP_002736922.1 CDS SPJ_1905 NC_012466.1 1785755 1786381 R identified by match to protein family HMM PF01588; putative tRNA binding domain protein complement(1785755..1786381) Streptococcus pneumoniae JJA 7678492 YP_002736923.1 CDS SPJ_1906 NC_012466.1 1786397 1786714 R identified by match to protein family HMM PF00085; thioredoxin family protein complement(1786397..1786714) Streptococcus pneumoniae JJA 7678717 YP_002736924.1 CDS SPJ_1907 NC_012466.1 1786711 1787001 R hypothetical protein complement(1786711..1787001) Streptococcus pneumoniae JJA 7679749 YP_002736925.1 CDS SPJ_1908 NC_012466.1 1787295 1787438 R identified by match to protein family HMM PF01473; hypothetical protein complement(1787295..1787438) Streptococcus pneumoniae JJA 7678875 YP_002736926.1 CDS SPJ_1909 NC_012466.1 1787647 1788321 R hypothetical protein complement(1787647..1788321) Streptococcus pneumoniae JJA 7679357 YP_002736927.1 CDS SPJ_1910 NC_012466.1 1788327 1788773 R identified by match to protein family HMM PF04397; response regulator of the LytR/AlgR family complement(1788327..1788773) Streptococcus pneumoniae JJA 7680134 YP_002736928.1 CDS SPJ_1911 NC_012466.1 1788887 1789390 R identified by match to protein family HMM PF01569; PAP2 family protein complement(1788887..1789390) Streptococcus pneumoniae JJA 7678407 YP_002736929.1 CDS SPJ_1912 NC_012466.1 1789387 1789749 R hypothetical protein complement(1789387..1789749) Streptococcus pneumoniae JJA 7678648 YP_002736930.1 CDS SPJ_1919 NC_012466.1 1792286 1793002 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(1792286..1793002) Streptococcus pneumoniae JJA 7678405 YP_002736931.1 CDS SPJ_1920 NC_012466.1 1793883 1795298 R identified by match to protein family HMM PF01289; pneumolysin (Thiol-activated cytolysin) complement(1793883..1795298) Streptococcus pneumoniae JJA 7679124 YP_002736932.1 CDS SPJ_1921 NC_012466.1 1795309 1795719 R hypothetical protein complement(1795309..1795719) Streptococcus pneumoniae JJA 7680308 YP_002736933.1 CDS SPJ_1922 NC_012466.1 1795712 1796320 R hypothetical protein complement(1795712..1796320) Streptococcus pneumoniae JJA 7680090 YP_002736934.1 CDS SPJ_1923 NC_012466.1 1796333 1796791 R hypothetical protein complement(1796333..1796791) Streptococcus pneumoniae JJA 7678503 YP_002736935.1 CDS SPJ_1924 NC_012466.1 1796916 1797047 D mobile genetic element 1796916..1797047 Streptococcus pneumoniae JJA 7679948 YP_002736936.1 CDS SPJ_1925 NC_012466.1 1797052 1797369 D mobile genetic element 1797052..1797369 Streptococcus pneumoniae JJA 7680527 YP_002736937.1 CDS SPJ_1926 NC_012466.1 1798053 1798313 R hypothetical protein complement(1798053..1798313) Streptococcus pneumoniae JJA 7678680 YP_002736938.1 CDS SPJ_1927 NC_012466.1 1798372 1798923 R hypothetical protein complement(1798372..1798923) Streptococcus pneumoniae JJA 7679330 YP_002736939.1 CDS SPJ_1928 NC_012466.1 1798913 1799698 R hypothetical protein complement(1798913..1799698) Streptococcus pneumoniae JJA 7679079 YP_002736940.1 CDS SPJ_1929 NC_012466.1 1800300 1800521 R identified by Glimmer3; putative; hypothetical protein complement(1800300..1800521) Streptococcus pneumoniae JJA 7679042 YP_002736941.1 CDS SPJ_1930 NC_012466.1 1800650 1801009 R hypothetical protein complement(1800650..1801009) Streptococcus pneumoniae JJA 7678431 YP_002736942.1 CDS SPJ_1931 NC_012466.1 1801248 1801409 R type II restriction-modification system regulatory protein, putative complement(1801248..1801409) Streptococcus pneumoniae JJA 7678829 YP_002736943.1 CDS SPJ_1932 NC_012466.1 1801755 1802711 R identified by match to protein family HMM PF01473; match to protein family HMM PF01510; autolysin (N-acetylmuramoyl-L-alanine amidase) (Mureinhydrolase) (Mucopeptide aminohydrolase) (Cell wall hydrolase) complement(1801755..1802711) Streptococcus pneumoniae JJA 7679853 YP_002736944.1 CDS SPJ_1933 NC_012466.1 1803087 1804457 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible protein complement(1803087..1804457) Streptococcus pneumoniae JJA 7679224 YP_002736945.1 CDS recA NC_012466.1 1804764 1805930 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1804764..1805930) Streptococcus pneumoniae JJA 7678619 YP_002736946.1 CDS SPJ_1935 NC_012466.1 1805985 1807241 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(1805985..1807241) Streptococcus pneumoniae JJA 7680195 YP_002736947.1 CDS SPJ_1936 NC_012466.1 1807326 1808342 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; regulator of lytrabc operon complement(1807326..1808342) Streptococcus pneumoniae JJA 7679103 YP_002736948.1 CDS SPJ_1937 NC_012466.1 1808350 1808868 R identified by match to protein family HMM PF00583; acetyltransferase, gnat family complement(1808350..1808868) Streptococcus pneumoniae JJA 7678517 YP_002736949.1 CDS SPJ_1938 NC_012466.1 1808858 1809301 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1808858..1809301) Streptococcus pneumoniae JJA 7680102 YP_002736950.1 CDS SPJ_1939 NC_012466.1 1809387 1810007 R lipoprotein, putative complement(1809387..1810007) Streptococcus pneumoniae JJA 7679383 YP_002736951.1 CDS SPJ_1940 NC_012466.1 1810390 1811253 R identified by match to protein family HMM PF01381; transcriptional activator complement(1810390..1811253) Streptococcus pneumoniae JJA 7678932 YP_002736952.1 CDS SPJ_1941 NC_012466.1 1811502 1811615 D hypothetical protein 1811502..1811615 Streptococcus pneumoniae JJA 7679350 YP_002736953.1 CDS SPJ_1942 NC_012466.1 1811718 1811942 D hypothetical protein 1811718..1811942 Streptococcus pneumoniae JJA 7678874 YP_002736954.1 CDS SPJ_1943 NC_012466.1 1811949 1812137 D hypothetical protein 1811949..1812137 Streptococcus pneumoniae JJA 7680360 YP_002736955.1 CDS SPJ_1944 NC_012466.1 1812254 1815244 D identified by match to protein family HMM PF05147; CylM protein, cytolytic toxin system 1812254..1815244 Streptococcus pneumoniae JJA 7679837 YP_002736956.1 CDS SPJ_1945 NC_012466.1 1815594 1816298 D hypothetical protein 1815594..1816298 Streptococcus pneumoniae JJA 7679644 YP_002736957.1 CDS SPJ_1946 NC_012466.1 1816279 1817208 D hypothetical protein 1816279..1817208 Streptococcus pneumoniae JJA 7679146 YP_002736958.1 CDS SPJ_1947 NC_012466.1 1817205 1819313 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; toxin secretion ABC transporter, ATP-binding/permease protein 1817205..1819313 Streptococcus pneumoniae JJA 7678583 YP_002736959.1 CDS SPJ_1948 NC_012466.1 1819337 1821076 D identified by match to protein family HMM PF00082; serine protease subtilase family protein 1819337..1821076 Streptococcus pneumoniae JJA 7680157 YP_002736960.1 CDS SPJ_1949 NC_012466.1 1821127 1821894 D identified by match to protein family HMM PF07242; hypothetical protein 1821127..1821894 Streptococcus pneumoniae JJA 7679916 YP_002736961.1 CDS SPJ_1950 NC_012466.1 1821896 1822528 D identified by match to protein family HMM PF00005; antimicrobial peptide ABC transporter ATPase 1821896..1822528 Streptococcus pneumoniae JJA 7679405 YP_002736962.1 CDS SPJ_1951 NC_012466.1 1822669 1822947 D hypothetical protein 1822669..1822947 Streptococcus pneumoniae JJA 7678518 YP_002736963.1 CDS ndk NC_012466.1 1823457 1823870 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1823457..1823870) Streptococcus pneumoniae JJA 7680259 YP_002736964.1 CDS rpoC NC_012466.1 1823981 1827658 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1823981..1827658) Streptococcus pneumoniae JJA 7680260 YP_002736965.1 CDS rpoB NC_012466.1 1827691 1831302 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1827691..1831302) Streptococcus pneumoniae JJA 7679628 YP_002736966.1 CDS SPJ_1956 NC_012466.1 1831986 1833317 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin complement(1831986..1833317) Streptococcus pneumoniae JJA 7680590 YP_002736967.1 CDS SPJ_1957 NC_012466.1 1833546 1834370 R identified by match to protein family HMM PF01223; DNA-entry nuclease (Competence-specific nuclease) complement(1833546..1834370) Streptococcus pneumoniae JJA 7680352 YP_002736968.1 CDS SPJ_1958 NC_012466.1 1834409 1834603 R hypothetical protein complement(1834409..1834603) Streptococcus pneumoniae JJA 7679450 YP_002736969.1 CDS murA2 NC_012466.1 1834590 1835873 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1834590..1835873) Streptococcus pneumoniae JJA 7678430 YP_002736970.1 CDS SPJ_1960 NC_012466.1 1835897 1836094 R identified by match to protein family HMM TIGR02327; hypothetical protein complement(1835897..1836094) Streptococcus pneumoniae JJA 7680515 YP_002736971.1 CDS SPJ_1961 NC_012466.1 1836185 1837222 R ATP-dependent protease La complement(1836185..1837222) Streptococcus pneumoniae JJA 7679892 YP_002736972.1 CDS coaD NC_012466.1 1837206 1837694 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(1837206..1837694) Streptococcus pneumoniae JJA 7679280 YP_002736973.1 CDS rsmD NC_012466.1 1837684 1838223 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; RNA methyltransferase, RsmD family complement(1837684..1838223) Streptococcus pneumoniae JJA 7678660 YP_002736974.1 CDS asnA NC_012466.1 1838288 1839280 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(1838288..1839280) Streptococcus pneumoniae JJA 7680508 YP_002736975.1 CDS SPJ_1965 NC_012466.1 1839392 1840075 R identified by match to protein family HMM PF01027; membrane protein complement(1839392..1840075) Streptococcus pneumoniae JJA 7679960 YP_002736976.1 CDS SPJ_1967 NC_012466.1 1840904 1841182 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1840904..1841182 Streptococcus pneumoniae JJA 7678414 YP_002736977.1 CDS SPJ_1968 NC_012466.1 1841260 1842186 D involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor 1841260..1842186 Streptococcus pneumoniae JJA 7680243 YP_002736978.1 CDS pflA NC_012466.1 1842261 1843055 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase 1-activating enzyme complement(1842261..1843055) Streptococcus pneumoniae JJA 7679661 YP_002736979.1 CDS SPJ_1970 NC_012466.1 1843181 1844431 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase complement(1843181..1844431) Streptococcus pneumoniae JJA 7680436 YP_002736980.1 CDS purR NC_012466.1 1844498 1845325 R identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor complement(1844498..1845325) Streptococcus pneumoniae JJA 7678784 YP_002736981.1 CDS SPJ_1972 NC_012466.1 1845592 1846533 R identified by match to protein family HMM PF01336; match to protein family HMM PF01966; 3'-5' exoribonuclease YhaM complement(1845592..1846533) Streptococcus pneumoniae JJA 7678386 YP_002736982.1 CDS SPJ_1973 NC_012466.1 1846523 1847779 R identified by match to protein family HMM PF02646; competence-induced protein Ccs50 complement(1846523..1847779) Streptococcus pneumoniae JJA 7678973 YP_002736983.1 CDS SPJ_1974 NC_012466.1 1847781 1848443 R identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; thiamine pyrophosphokinase complement(1847781..1848443) Streptococcus pneumoniae JJA 7679759 YP_002736984.1 CDS rpe NC_012466.1 1848406 1849062 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(1848406..1849062) Streptococcus pneumoniae JJA 7680207 YP_002736985.1 CDS rsgA NC_012466.1 1849073 1849951 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1849073..1849951) Streptococcus pneumoniae JJA 7678732 YP_002736986.1 CDS ksgA NC_012466.1 1849953 1850825 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1849953..1850825) Streptococcus pneumoniae JJA 7679226 YP_002736987.1 CDS SPJ_1978 NC_012466.1 1851076 1851369 R identified by Glimmer3; putative; hypothetical protein complement(1851076..1851369) Streptococcus pneumoniae JJA 7678843 YP_002736988.1 CDS SPJ_1979 NC_012466.1 1851362 1852003 R identified by match to protein family HMM PF00005; antimicrobial peptide ABC transporter ATPase complement(1851362..1852003) Streptococcus pneumoniae JJA 7679216 YP_002736989.1 CDS SPJ_1980 NC_012466.1 1852005 1854035 R identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654; immunity protein, putative complement(1852005..1854035) Streptococcus pneumoniae JJA 7680193 YP_002736990.1 CDS SPJ_1981 NC_012466.1 1854112 1854408 R identified by match to protein family HMM TIGR01653; bacteriocin, lactococcin 972 family complement(1854112..1854408) Streptococcus pneumoniae JJA 7679518 YP_002736991.1 CDS SPJ_1982 NC_012466.1 1854728 1855627 R transcriptional activator complement(1854728..1855627) Streptococcus pneumoniae JJA 7678402 YP_002736992.1 CDS SPJ_1983 NC_012466.1 1855699 1856259 R identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; putative primase homolog complement(1855699..1856259) Streptococcus pneumoniae JJA 7680241 YP_002736993.1 CDS SPJ_1984 NC_012466.1 1856259 1857032 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; hydrolase, TatD family complement(1856259..1857032) Streptococcus pneumoniae JJA 7679918 YP_002736994.1 CDS SPJ_1985 NC_012466.1 1857337 1858230 R identified by match to protein family HMM PF00746; match to protein family HMM PF07564; match to protein family HMM TIGR01167; cell wall surface anchor family protein complement(1857337..1858230) Streptococcus pneumoniae JJA 7679013 YP_002736995.1 CDS rpmH NC_012466.1 1858514 1858648 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1858514..1858648) Streptococcus pneumoniae JJA 7679469 YP_002736996.1 CDS SPJ_1987 NC_012466.1 1858793 1860007 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1858793..1860007) Streptococcus pneumoniae JJA 7678800 YP_002736997.1 CDS SPJ_1988 NC_012466.1 1860163 1860456 R hypothetical protein complement(1860163..1860456) Streptococcus pneumoniae JJA 7680385 YP_002736998.1 CDS SPJ_1989 NC_012466.1 1860614 1861066 D identified by match to protein family HMM PF00582; universal stress protein family 1860614..1861066 Streptococcus pneumoniae JJA 7679767 YP_002736999.1 CDS SPJ_1990 NC_012466.1 1861101 1862489 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family protein complement(1861101..1862489) Streptococcus pneumoniae JJA 7680105 YP_002737000.1 CDS SPJ_1991 NC_012466.1 1862555 1863517 D identified by match to protein family HMM PF00710; L-asparaginase 1862555..1863517 Streptococcus pneumoniae JJA 7678413 YP_002737001.1 CDS SPJ_1992 NC_012466.1 1863546 1863749 R identified by Glimmer3; putative; hypothetical protein complement(1863546..1863749) Streptococcus pneumoniae JJA 7678997 YP_002737002.1 CDS ccpA NC_012466.1 1863813 1864823 R identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A complement(1863813..1864823) Streptococcus pneumoniae JJA 7679761 YP_002737003.1 CDS SPJ_1994 NC_012466.1 1865247 1865846 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; response regulator complement(1865247..1865846) Streptococcus pneumoniae JJA 7678707 YP_002737004.1 CDS SPJ_1995 NC_012466.1 1865847 1866944 R identified by match to protein family HMM PF02518; match to protein family HMM PF07730; histidine kinase complement(1865847..1866944) Streptococcus pneumoniae JJA 7679343 YP_002737005.1 CDS SPJ_1996 NC_012466.1 1866944 1867681 R identified by match to protein family HMM PF01061; multidrug ABC transporter permease complement(1866944..1867681) Streptococcus pneumoniae JJA 7679976 YP_002737006.1 CDS SPJ_1997 NC_012466.1 1867683 1868567 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1867683..1868567) Streptococcus pneumoniae JJA 7680450 YP_002737007.1 CDS SPJ_1998 NC_012466.1 1868554 1868748 R hypothetical protein complement(1868554..1868748) Streptococcus pneumoniae JJA 7678720 YP_002737008.1 CDS SPJ_1999 NC_012466.1 1868745 1868876 R identified by Glimmer3; putative; hypothetical protein complement(1868745..1868876) Streptococcus pneumoniae JJA 7679327 YP_002737009.1 CDS SPJ_2014 NC_012466.1 1875631 1876110 R competence-specific global transcription modulator complement(1875631..1876110) Streptococcus pneumoniae JJA 7680588 YP_002737010.1 CDS nusG NC_012466.1 1876232 1876768 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1876232..1876768) Streptococcus pneumoniae JJA 7679978 YP_002737011.1 CDS secE NC_012466.1 1876823 1876999 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1876823..1876999) Streptococcus pneumoniae JJA 7679468 YP_002737012.1 CDS rpmG NC_012466.1 1877009 1877161 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(1877009..1877161) Streptococcus pneumoniae JJA 7678821 YP_002737013.1 CDS SPJ_2018 NC_012466.1 1877214 1879409 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 2A complement(1877214..1879409) Streptococcus pneumoniae JJA 7680033 YP_002737014.1 CDS SPJ_2019 NC_012466.1 1879535 1880371 D identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase, RluD subfamily 1879535..1880371 Streptococcus pneumoniae JJA 7680129 YP_002737015.1 CDS gap NC_012466.1 1880439 1881446 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1880439..1881446) Streptococcus pneumoniae JJA 7679727 YP_002737016.1 CDS SPJ_2021 NC_012466.1 1881623 1882456 R identified by match to protein family HMM PF02687; efflux ABC transporter, permease protein complement(1881623..1882456) Streptococcus pneumoniae JJA 7679081 YP_002737017.1 CDS SPJ_2022 NC_012466.1 1883176 1883505 R identified by match to protein family HMM PF01710; transposase complement(1883176..1883505) Streptococcus pneumoniae JJA 7679284 YP_002737018.1 CDS nadC NC_012466.1 1883636 1884508 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(1883636..1884508) Streptococcus pneumoniae JJA 7678677 YP_002737019.1 CDS SPJ_2024 NC_012466.1 1884745 1886055 D identified by match to protein family HMM PF03600; match to protein family HMM PF07158; membrane protein 1884745..1886055 Streptococcus pneumoniae JJA 7679165 YP_002737020.1 CDS SPJ_2025 NC_012466.1 1886421 1886552 R hypothetical protein complement(1886421..1886552) Streptococcus pneumoniae JJA 7678523 YP_002737021.1 CDS SPJ_2026 NC_012466.1 1887075 1887803 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(1887075..1887803) Streptococcus pneumoniae JJA 7680136 YP_002737022.1 CDS SPJ_2027 NC_012466.1 1887961 1889370 D identified by match to protein family HMM PF00232; beta-glucosidase 1887961..1889370 Streptococcus pneumoniae JJA 7679611 YP_002737023.1 CDS SPJ_2028 NC_012466.1 1889388 1890683 D identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; phosphotransferase system system, cellobiose-specific IIC component 1889388..1890683 Streptococcus pneumoniae JJA 7679477 YP_002737024.1 CDS SPJ_2029 NC_012466.1 1890649 1890996 D identified by match to protein family HMM PF02302; cellobiose-specific phosphotransferase enzyme iib component (pts system cellobiose-specific eiib component) (eiib-cel) 1890649..1890996 Streptococcus pneumoniae JJA 7678851 YP_002737025.1 CDS SPJ_2030 NC_012466.1 1890993 1891301 D identified by match to protein family HMM PF02255; lichenan-specific phosphotransferase enzyme iia component (pts system lichenan-specific eiia component) (eiia-lic) (eiii-lic) 1890993..1891301 Streptococcus pneumoniae JJA 7680419 YP_002737026.1 CDS SPJ_2031 NC_012466.1 1892287 1894938 R identified by match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(1892287..1894938) Streptococcus pneumoniae JJA 7679856 YP_002737027.1 CDS SPJ_2032 NC_012466.1 1895141 1895278 R hypothetical protein complement(1895141..1895278) Streptococcus pneumoniae JJA 7679458 YP_002737028.1 CDS SPJ_2033 NC_012466.1 1895238 1895648 R identified by match to protein family HMM PF02493; morn motif family protein complement(1895238..1895648) Streptococcus pneumoniae JJA 7678839 YP_002737029.1 CDS SPJ_2034 NC_012466.1 1895650 1896078 R identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase complement(1895650..1896078) Streptococcus pneumoniae JJA 7680305 YP_002737030.1 CDS yajC NC_012466.1 1896125 1896424 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1896125..1896424) Streptococcus pneumoniae JJA 7680245 YP_002737031.1 CDS tkt NC_012466.1 1896541 1898517 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1896541..1898517) Streptococcus pneumoniae JJA 7679428 YP_002737032.1 CDS SPJ_2037 NC_012466.1 1898631 1899722 R putative L-ascorbate 6-phosphate lactonase complement(1898631..1899722) Streptococcus pneumoniae JJA 7679923 YP_002737033.1 CDS SPJ_2038 NC_012466.1 1899834 1901507 R identified by match to protein family HMM PF00874; match to protein family HMM PF08279; transcriptional regulator, BglG family complement(1899834..1901507) Streptococcus pneumoniae JJA 7680093 YP_002737034.1 CDS araD NC_012466.1 1901686 1902390 R catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways; L-ribulose-5-phosphate 4-epimerase complement(1901686..1902390) Streptococcus pneumoniae JJA 7678904 YP_002737035.1 CDS SPJ_2040 NC_012466.1 1902392 1903255 R L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase complement(1902392..1903255) Streptococcus pneumoniae JJA 7679138 YP_002737036.1 CDS ulaD NC_012466.1 1903259 1903924 R catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase complement(1903259..1903924) Streptococcus pneumoniae JJA 7679635 YP_002737037.1 CDS SPJ_2042 NC_012466.1 1903941 1904426 R identified by match to protein family HMM PF00359; ascorbate-specific phosphotransferase enzyme iia component (pts system ascorbate-specific eiia component) complement(1903941..1904426) Streptococcus pneumoniae JJA 7678738 YP_002737038.1 CDS SPJ_2043 NC_012466.1 1904503 1904784 R identified by match to protein family HMM PF02302; ascorbate-specific phosphotransferase enzyme iib component (ascorbate-specific pts system eiib component) complement(1904503..1904784) Streptococcus pneumoniae JJA 7679234 YP_002737039.1 CDS SPJ_2044 NC_012466.1 1904807 1906264 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(1904807..1906264) Streptococcus pneumoniae JJA 7678457 YP_002737040.1 CDS SPJ_2045 NC_012466.1 1906415 1907038 R hypothetical protein complement(1906415..1907038) Streptococcus pneumoniae JJA 7679035 YP_002737041.1 CDS SPJ_2046 NC_012466.1 1907089 1908075 R identified by match to protein family HMM PF01424; jag protein complement(1907089..1908075) Streptococcus pneumoniae JJA 7679917 YP_002737042.1 CDS SPJ_2047 NC_012466.1 1908094 1908924 R identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592; membrane protein OxaA 1 complement(1908094..1908924) Streptococcus pneumoniae JJA 7680517 YP_002737043.1 CDS rnpA NC_012466.1 1908893 1909264 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1908893..1909264) Streptococcus pneumoniae JJA 7680298 YP_002737044.1 CDS SPJ_2049 NC_012466.1 1909281 1909412 R hypothetical protein complement(1909281..1909412) Streptococcus pneumoniae JJA 7679296 YP_002737045.1 CDS ackA NC_012466.1 1909413 1910603 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1909413..1910603) Streptococcus pneumoniae JJA 7679047 YP_002737046.1 CDS SPJ_2051 NC_012466.1 1910654 1911607 R adenine-specific DNA methylase complement(1910654..1911607) Streptococcus pneumoniae JJA 7679703 YP_002737047.1 CDS SPJ_2052 NC_012466.1 1911668 1912255 R identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase small domain superfamily complement(1911668..1912255) Streptococcus pneumoniae JJA 7680054 YP_002737048.1 CDS SPJ_2053 NC_012466.1 1912358 1912804 R hypothetical protein complement(1912358..1912804) Streptococcus pneumoniae JJA 7678902 YP_002737049.1 CDS SPJ_2054 NC_012466.1 1912782 1913243 R competence protein ComGF complement(1912782..1913243) Streptococcus pneumoniae JJA 7680001 YP_002737050.1 CDS SPJ_2055 NC_012466.1 1913206 1913466 R hypothetical protein complement(1913206..1913466) Streptococcus pneumoniae JJA 7679189 YP_002737051.1 CDS SPJ_2056 NC_012466.1 1913471 1913875 R identified by match to protein family HMM TIGR02532; competence protein CglD complement(1913471..1913875) Streptococcus pneumoniae JJA 7678752 YP_002737052.1 CDS SPJ_2057 NC_012466.1 1913868 1914194 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; competence protein complement(1913868..1914194) Streptococcus pneumoniae JJA 7680139 YP_002737053.1 CDS SPJ_2058 NC_012466.1 1914196 1915044 R identified by match to protein family HMM PF00482; competence protein CglB complement(1914196..1915044) Streptococcus pneumoniae JJA 7679509 YP_002737054.1 CDS SPJ_2059 NC_012466.1 1915160 1916101 R identified by match to protein family HMM PF00437; putative ABC transporter subunit ComYA complement(1915160..1916101) Streptococcus pneumoniae JJA 7679131 YP_002737055.1 CDS SPJ_2060 NC_012466.1 1916177 1916542 R identified by match to protein family HMM PF06279; hypothetical protein complement(1916177..1916542) Streptococcus pneumoniae JJA 7678620 YP_002737056.1 CDS SPJ_2061 NC_012466.1 1916693 1917751 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; alcohol dehydrogenase, zinc-containing complement(1916693..1917751) Streptococcus pneumoniae JJA 7680047 YP_002737057.1 CDS nagA NC_012466.1 1917914 1919065 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase complement(1917914..1919065) Streptococcus pneumoniae JJA 7679563 YP_002737058.1 CDS SPJ_2063 NC_012466.1 1919218 1921035 R identified by match to protein family HMM PF01757; acyltransferase complement(1919218..1921035) Streptococcus pneumoniae JJA 7679928 YP_002737059.1 CDS tgt NC_012466.1 1921133 1922275 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1921133..1922275) Streptococcus pneumoniae JJA 7680126 YP_002737060.1 CDS SPJ_2065 NC_012466.1 1922405 1923262 D identified by match to protein family HMM PF06161; hypothetical protein 1922405..1923262 Streptococcus pneumoniae JJA 7679355 YP_002737061.1 CDS pcp2 NC_012466.1 1923290 1923934 R catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase complement(1923290..1923934) Streptococcus pneumoniae JJA 7678872 YP_002737062.1 CDS SPJ_2067 NC_012466.1 1924041 1924400 R identified by match to protein family HMM PF06993; hypothetical protein complement(1924041..1924400) Streptococcus pneumoniae JJA 7679833 YP_002737063.1 CDS SPJ_2068 NC_012466.1 1924411 1924836 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; transcriptional regulator, MarR family complement(1924411..1924836) Streptococcus pneumoniae JJA 7680363 YP_002737064.1 CDS SPJ_2069 NC_012466.1 1925159 1926271 R identified by match to protein family HMM PF01476; LysM domain-containing protein complement(1925159..1926271) Streptococcus pneumoniae JJA 7680250 YP_002737065.1 CDS SPJ_2070 NC_012466.1 1926437 1927057 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 complement(1926437..1927057) Streptococcus pneumoniae JJA 7678531 YP_002737066.1 CDS SPJ_2071 NC_012466.1 1927061 1928341 R identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR00797; multi antimicrobial extrusion complement(1927061..1928341) Streptococcus pneumoniae JJA 7679015 YP_002737067.1 CDS thrC NC_012466.1 1928402 1929886 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1928402..1929886) Streptococcus pneumoniae JJA 7679498 YP_002737068.1 CDS SPJ_2073 NC_012466.1 1929962 1931239 R hypothetical protein complement(1929962..1931239) Streptococcus pneumoniae JJA 7680386 YP_002737069.1 CDS SPJ_2090 NC_012466.1 1937708 1938139 R cytidine/deoxycytidylate deaminase family protein complement(1937708..1938139) Streptococcus pneumoniae JJA 7680576 YP_002737070.1 CDS gltX NC_012466.1 1938153 1939613 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1938153..1939613) Streptococcus pneumoniae JJA 7680288 YP_002737071.1 CDS pgi NC_012466.1 1939737 1941086 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1939737..1941086) Streptococcus pneumoniae JJA 7678458 YP_002737072.1 CDS SPJ_2093 NC_012466.1 1941073 1941252 R hypothetical protein complement(1941073..1941252) Streptococcus pneumoniae JJA 7678985 YP_002737073.1 CDS SPJ_2094 NC_012466.1 1941256 1941945 R identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase complement(1941256..1941945) Streptococcus pneumoniae JJA 7679674 YP_002737074.1 CDS SPJ_2095 NC_012466.1 1942084 1943850 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1942084..1943850) Streptococcus pneumoniae JJA 7680074 YP_002737075.1 CDS SPJ_2096 NC_012466.1 1944003 1944311 D transposase 1944003..1944311 Streptococcus pneumoniae JJA 7678466 YP_002737076.1 CDS SPJ_2097 NC_012466.1 1944641 1946335 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1944641..1946335) Streptococcus pneumoniae JJA 7678805 YP_002737077.1 CDS mutS NC_012466.1 1946482 1949016 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1946482..1949016) Streptococcus pneumoniae JJA 7679424 YP_002737078.1 CDS argR NC_012466.1 1949067 1949513 R identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529; arginine repressor complement(1949067..1949513) Streptococcus pneumoniae JJA 7679112 YP_002737079.1 CDS argS NC_012466.1 1949649 1951340 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1949649..1951340 Streptococcus pneumoniae JJA 7679586 YP_002737080.1 CDS SPJ_2101 NC_012466.1 1951655 1952044 R identified by match to protein family HMM PF01609; transposase (IS4 family) complement(1951655..1952044) Streptococcus pneumoniae JJA 7680096 YP_002737081.1 CDS SPJ_2102 NC_012466.1 1952198 1952683 D identified by match to protein family HMM PF06172; hypothetical protein 1952198..1952683 Streptococcus pneumoniae JJA 7678913 YP_002737082.1 CDS SPJ_2103 NC_012466.1 1952767 1953474 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory proteinphoP 1952767..1953474 Streptococcus pneumoniae JJA 7679401 YP_002737083.1 CDS SPJ_2104 NC_012466.1 1953475 1954806 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase PnpS 1953475..1954806 Streptococcus pneumoniae JJA 7679877 YP_002737084.1 CDS SPJ_2105 NC_012466.1 1954973 1955848 D ABC transporter substrate-binding protein - phosphate transport 1954973..1955848 Streptococcus pneumoniae JJA 7680365 YP_002737085.1 CDS pstC2 NC_012466.1 1955966 1956829 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1955966..1956829 Streptococcus pneumoniae JJA 7678637 YP_002737086.1 CDS pstA2 NC_012466.1 1956822 1957637 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1956822..1957637 Streptococcus pneumoniae JJA 7679134 YP_002737087.1 CDS pstB3 NC_012466.1 1957639 1958391 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1957639..1958391 Streptococcus pneumoniae JJA 7679558 YP_002737088.1 CDS phoU2 NC_012466.1 1958406 1959056 D identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1958406..1959056 Streptococcus pneumoniae JJA 7679522 YP_002737089.1 CDS SPJ_2110 NC_012466.1 1959124 1959540 D transposase, IS1380-Spn1 related, truncation 1959124..1959540 Streptococcus pneumoniae JJA 7680181 YP_002737090.1 CDS SPJ_2111 NC_012466.1 1959663 1960103 R identified by match to protein family HMM PF01381; transcriptional regulator complement(1959663..1960103) Streptococcus pneumoniae JJA 7678750 YP_002737091.1 CDS gpsA NC_012466.1 1960315 1961331 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1960315..1961331 Streptococcus pneumoniae JJA 7679235 YP_002737092.1 CDS galU NC_012466.1 1961353 1962252 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1961353..1962252 Streptococcus pneumoniae JJA 7678695 YP_002737093.1 CDS SPJ_2114 NC_012466.1 1962324 1963001 R identified by match to protein family HMM PF01694; peptidase, S54 complement(1962324..1963001) Streptococcus pneumoniae JJA 7679237 YP_002737094.1 CDS SPJ_2115 NC_012466.1 1962985 1963524 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(1962985..1963524) Streptococcus pneumoniae JJA 7678976 YP_002737095.1 CDS SPJ_2116 NC_012466.1 1963536 1964666 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; peptidase, M20/M25/M40 family complement(1963536..1964666) Streptococcus pneumoniae JJA 7680430 YP_002737096.1 CDS SPJ_2117 NC_012466.1 1964734 1965432 R identified by match to protein family HMM PF00132; match to protein family HMM PF08503; galactoside O-acetyltransferase complement(1964734..1965432) Streptococcus pneumoniae JJA 7680209 YP_002737097.1 CDS SPJ_2118 NC_012466.1 1965662 1966573 R identified by match to protein family HMM PF00892; membrane protein complement(1965662..1966573) Streptococcus pneumoniae JJA 7678485 YP_002737098.1 CDS SPJ_2119 NC_012466.1 1966638 1969103 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1B complement(1966638..1969103) Streptococcus pneumoniae JJA 7678487 YP_002737099.1 CDS tyrS NC_012466.1 1969245 1970501 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1969245..1970501 Streptococcus pneumoniae JJA 7679393 YP_002737100.1 CDS SPJ_2121 NC_012466.1 1970579 1972642 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; P-type ATPase-metal/cation transport complement(1970579..1972642) Streptococcus pneumoniae JJA 7679627 YP_002737101.1 CDS SPJ_2122 NC_012466.1 1972644 1972922 R hypothetical protein complement(1972644..1972922) Streptococcus pneumoniae JJA 7680267 YP_002737102.1 CDS SPJ_2123 NC_012466.1 1973074 1973922 D identified by match to protein family HMM PF08241; 23S rRNA m1G745 methyltransferase 1973074..1973922 Streptococcus pneumoniae JJA 7679730 YP_002737103.1 CDS SPJ_2124 NC_012466.1 1974261 1974467 R hypothetical protein complement(1974261..1974467) Streptococcus pneumoniae JJA 7680206 YP_002737104.1 CDS SPJ_2125 NC_012466.1 1974544 1975116 D hypothetical protein 1974544..1975116 Streptococcus pneumoniae JJA 7678539 YP_002737105.1 CDS SPJ_2126 NC_012466.1 1975656 1975802 R identified by Glimmer3; putative; hypothetical protein complement(1975656..1975802) Streptococcus pneumoniae JJA 7679162 YP_002737106.1 CDS SPJ_2127 NC_012466.1 1976160 1978418 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase complement(1976160..1978418) Streptococcus pneumoniae JJA 7679038 YP_002737107.1 CDS malQ NC_012466.1 1978444 1979961 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(1978444..1979961) Streptococcus pneumoniae JJA 7679655 YP_002737108.1 CDS SPJ_2129 NC_012466.1 1980511 1981782 D identified by match to protein family HMM PF01547; maltose/maltodextrin-binding protein 1980511..1981782 Streptococcus pneumoniae JJA 7678838 YP_002737109.1 CDS SPJ_2130 NC_012466.1 1981893 1983185 D identified by match to protein family HMM PF00528; match to protein family HMM PF05154; maltodextrin transport system permease protein MalC 1981893..1983185 Streptococcus pneumoniae JJA 7678504 YP_002737110.1 CDS SPJ_2131 NC_012466.1 1983187 1984029 D identified by match to protein family HMM PF00528; maltose/maltodextrin ABC transporter permease 1983187..1984029 Streptococcus pneumoniae JJA 7679815 YP_002737111.1 CDS SPJ_2132 NC_012466.1 1984282 1985082 D maltodextrose utilization protein MalA 1984282..1985082 Streptococcus pneumoniae JJA 7679362 YP_002737112.1 CDS SPJ_2133 NC_012466.1 1985092 1986078 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator MalR (Maltose operontranscriptional repressor) 1985092..1986078 Streptococcus pneumoniae JJA 7680196 YP_002737113.1 CDS SPJ_2134 NC_012466.1 1986232 1986417 D identified by Glimmer3; putative; hypothetical protein 1986232..1986417 Streptococcus pneumoniae JJA 7679714 YP_002737114.1 CDS SPJ_2135 NC_012466.1 1986459 1987400 R identified by match to protein family HMM PF02588; YitT family protein complement(1986459..1987400) Streptococcus pneumoniae JJA 7678958 YP_002737115.1 CDS aspS NC_012466.1 1987378 1989141 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1987378..1989141) Streptococcus pneumoniae JJA 7678412 YP_002737116.1 CDS SPJ_2137 NC_012466.1 1989260 1989496 R chlorohydrolase complement(1989260..1989496) Streptococcus pneumoniae JJA 7678401 YP_002737117.1 CDS SPJ_2138 NC_012466.1 1989538 1989768 R hypothetical protein complement(1989538..1989768) Streptococcus pneumoniae JJA 7680018 YP_002737118.1 CDS SPJ_2139 NC_012466.1 1989786 1990427 R identified by match to protein family HMM PF02517; caax amino protease family complement(1989786..1990427) Streptococcus pneumoniae JJA 7679954 YP_002737119.1 CDS SPJ_2140 NC_012466.1 1990439 1991161 R hypothetical protein complement(1990439..1991161) Streptococcus pneumoniae JJA 7679457 YP_002737120.1 CDS SPJ_2141 NC_012466.1 1991164 1991361 R hypothetical protein complement(1991164..1991361) Streptococcus pneumoniae JJA 7680082 YP_002737121.1 CDS SPJ_2142 NC_012466.1 1991361 1991567 R identified by match to protein family HMM PF01381; hypothetical protein complement(1991361..1991567) Streptococcus pneumoniae JJA 7679620 YP_002737122.1 CDS SPJ_2143 NC_012466.1 1991577 1991939 R hypothetical protein complement(1991577..1991939) Streptococcus pneumoniae JJA 7679575 YP_002737123.1 CDS hisS NC_012466.1 1992146 1993435 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1992146..1993435) Streptococcus pneumoniae JJA 7679089 YP_002737124.1 CDS SPJ_2145 NC_012466.1 1993513 1994760 R identified by match to protein family HMM PF07690; transporter, major facilitator family complement(1993513..1994760) Streptococcus pneumoniae JJA 7678603 YP_002737125.1 CDS SPJ_2146 NC_012466.1 1994977 1996323 D identified by match to protein family HMM PF01609; Spn1 transposase 1994977..1996323 Streptococcus pneumoniae JJA 7680356 YP_002737126.1 CDS SPJ_2147 NC_012466.1 1996659 1997420 R identified by match to protein family HMM TIGR01716; positive transcriptional regulator of glucosyltransferase and Spp phenotype complement(1996659..1997420) Streptococcus pneumoniae JJA 7679765 YP_002737127.1 CDS SPJ_2148 NC_012466.1 1997485 1997619 R hypothetical protein complement(1997485..1997619) Streptococcus pneumoniae JJA 7679158 YP_002737128.1 CDS SPJ_2149 NC_012466.1 1997634 1997975 D identified by match to protein family HMM PF01883; hypothetical protein 1997634..1997975 Streptococcus pneumoniae JJA 7679870 YP_002737129.1 CDS SPJ_2150 NC_012466.1 1998039 1998203 D identified by Glimmer3; putative; hypothetical protein 1998039..1998203 Streptococcus pneumoniae JJA 7679300 YP_002737130.1 CDS ilvD NC_012466.1 1998229 1999932 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1998229..1999932) Streptococcus pneumoniae JJA 7680042 YP_002737131.1 CDS SPJ_2152 NC_012466.1 2000165 2001097 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C- subunit complement(2000165..2001097) Streptococcus pneumoniae JJA 7679546 YP_002737132.1 CDS SPJ_2153 NC_012466.1 2001094 2001951 R identified by match to protein family HMM PF00456; transketolase, thiamine disphosphate-binding subunit complement(2001094..2001951) Streptococcus pneumoniae JJA 7678774 YP_002737133.1 CDS ulaA NC_012466.1 2001955 2003301 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2001955..2003301) Streptococcus pneumoniae JJA 7680217 YP_002737134.1 CDS SPJ_2155 NC_012466.1 2003314 2003598 R identified by match to protein family HMM PF02302; phosphotransferase system, galactitol-specific IIB component complement(2003314..2003598) Streptococcus pneumoniae JJA 7679973 YP_002737135.1 CDS SPJ_2156 NC_012466.1 2003602 2005632 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; transcriptional regulator, BglG family protein complement(2003602..2005632) Streptococcus pneumoniae JJA 7679238 YP_002737136.1 CDS SPJ_2157 NC_012466.1 2005823 2006830 D identified by match to protein family HMM PF01145; integral membrane protein 2005823..2006830 Streptococcus pneumoniae JJA 7678511 YP_002737137.1 CDS SPJ_2158 NC_012466.1 2006833 2007033 D hypothetical protein 2006833..2007033 Streptococcus pneumoniae JJA 7678919 YP_002737138.1 CDS rpmF NC_012466.1 2007185 2007367 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2007185..2007367 Streptococcus pneumoniae JJA 7680330 YP_002737139.1 CDS rpmG NC_012466.1 2007383 2007532 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2007383..2007532 Streptococcus pneumoniae JJA 7680274 YP_002737140.1 CDS SPJ_2161 NC_012466.1 2008012 2009937 R identified by match to protein family HMM PF01473; choline binding protein PcpA complement(2008012..2009937) Streptococcus pneumoniae JJA 7679711 YP_002737141.1 CDS SPJ_2162 NC_012466.1 2010272 2010454 D transposase 2010272..2010454 Streptococcus pneumoniae JJA 7678766 YP_002737142.1 CDS SPJ_2163 NC_012466.1 2010411 2010842 D mobile genetic element 2010411..2010842 Streptococcus pneumoniae JJA 7680123 YP_002737143.1 CDS SPJ_2164 NC_012466.1 2010847 2011110 D mobile genetic element 2010847..2011110 Streptococcus pneumoniae JJA 7679368 YP_002737144.1 CDS SPJ_2165 NC_012466.1 2011180 2011455 R hypothetical protein complement(2011180..2011455) Streptococcus pneumoniae JJA 7679188 YP_002737145.1 CDS SPJ_2166 NC_012466.1 2011521 2011652 R identified by Glimmer3; putative; hypothetical protein complement(2011521..2011652) Streptococcus pneumoniae JJA 7678425 YP_002737146.1 CDS SPJ_2167 NC_012466.1 2011832 2013712 R identified by match to protein family HMM PF00728; N-acetyl-beta-D-glucosaminidase complement(2011832..2013712) Streptococcus pneumoniae JJA 7680404 YP_002737147.1 CDS SPJ_2168 NC_012466.1 2013706 2014587 R identified by match to protein family HMM PF00480; ROK family protein complement(2013706..2014587) Streptococcus pneumoniae JJA 7679676 YP_002737148.1 CDS SPJ_2169 NC_012466.1 2014659 2017304 R identified by match to protein family HMM PF01074; match to protein family HMM PF07748; glycosyl hydrolase, family 38 complement(2014659..2017304) Streptococcus pneumoniae JJA 7680101 YP_002737149.1 CDS SPJ_2170 NC_012466.1 2017395 2018675 R identified by match to protein family HMM PF06824; hypothetical protein complement(2017395..2018675) Streptococcus pneumoniae JJA 7678972 YP_002737150.1 CDS SPJ_2171 NC_012466.1 2018846 2020930 D identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180; antigen, cell wall surface anchor family 2018846..2020930 Streptococcus pneumoniae JJA 7678499 YP_002737151.1 CDS SPJ_2172 NC_012466.1 2020970 2022649 R FucA complement(2020970..2022649) Streptococcus pneumoniae JJA 7680203 YP_002737152.1 CDS arcA NC_012466.1 2023405 2024634 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 2023405..2024634 Streptococcus pneumoniae JJA 7679724 YP_002737153.1 CDS argF NC_012466.1 2024692 2025708 D catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 2024692..2025708 Streptococcus pneumoniae JJA 7679836 YP_002737154.1 CDS arcC NC_012466.1 2025873 2026820 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2025873..2026820 Streptococcus pneumoniae JJA 7680170 YP_002737155.1 CDS SPJ_2176 NC_012466.1 2027031 2028542 D identified by match to protein family HMM PF03606; arginine-ornithine antiporter 2027031..2028542 Streptococcus pneumoniae JJA 7678595 YP_002737156.1 CDS SPJ_2177 NC_012466.1 2028564 2029895 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887; hypothetical protein 2028564..2029895 Streptococcus pneumoniae JJA 7678945 YP_002737157.1 CDS SPJ_2178 NC_012466.1 2029989 2030117 D transposase 2029989..2030117 Streptococcus pneumoniae JJA 7679040 YP_002737158.1 CDS SPJ_2179 NC_012466.1 2030300 2030590 R hypothetical protein complement(2030300..2030590) Streptococcus pneumoniae JJA 7679371 YP_002737159.1 CDS SPJ_2180 NC_012466.1 2030578 2030829 R identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168; gram-positive signal peptide, ysirk family protein complement(2030578..2030829) Streptococcus pneumoniae JJA 7679294 YP_002737160.1 CDS SPJ_2181 NC_012466.1 2031033 2031191 D chlorohydrolase 2031033..2031191 Streptococcus pneumoniae JJA 7678757 YP_002737161.1 CDS SPJ_2182 NC_012466.1 2031228 2032127 R identified by match to protein family HMM PF01145; spfh domain/band 7 family complement(2031228..2032127) Streptococcus pneumoniae JJA 7679704 YP_002737162.1 CDS SPJ_2183 NC_012466.1 2032257 2033408 R identified by match to protein family HMM PF00465; alcohol dehydrogenase, iron-containing complement(2032257..2033408) Streptococcus pneumoniae JJA 7679091 YP_002737163.1 CDS fucI NC_012466.1 2033554 2035320 R catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase complement(2033554..2035320) Streptococcus pneumoniae JJA 7678999 YP_002737164.1 CDS SPJ_2185 NC_012466.1 2035377 2038493 R identified by match to protein family HMM PF00754; match to protein family HMM PF08306; match to protein family HMM PF08307; glycosyl hydrolase family 98 complement(2035377..2038493) Streptococcus pneumoniae JJA 7678534 YP_002737165.1 CDS SPJ_2186 NC_012466.1 2038503 2040797 R large secreted protein complement(2038503..2040797) Streptococcus pneumoniae JJA 7680489 YP_002737166.1 CDS SPJ_2187 NC_012466.1 2040856 2041656 R identified by match to protein family HMM PF03613; mannose permease iid component (pts system mannose-specific eiidcomponent) (eiid-man) (eii-m-man) complement(2040856..2041656) Streptococcus pneumoniae JJA 7679487 YP_002737167.1 CDS SPJ_2188 NC_012466.1 2041653 2042426 R identified by match to protein family HMM PF03609; phosphotransferase system sugar-specific EII component complement(2041653..2042426) Streptococcus pneumoniae JJA 7679906 YP_002737168.1 CDS SPJ_2189 NC_012466.1 2042451 2042921 R identified by match to protein family HMM PF03830; PTS system, IIB component complement(2042451..2042921) Streptococcus pneumoniae JJA 7680396 YP_002737169.1 CDS SPJ_2190 NC_012466.1 2042912 2043355 R identified by match to protein family HMM PF03610; PTS system, IIA component complement(2042912..2043355) Streptococcus pneumoniae JJA 7680040 YP_002737170.1 CDS SPJ_2191 NC_012466.1 2043336 2043776 R identified by match to protein family HMM PF05025; fucose operon FucU protein complement(2043336..2043776) Streptococcus pneumoniae JJA 7679417 YP_002737171.1 CDS SPJ_2192 NC_012466.1 2043788 2044426 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase complement(2043788..2044426) Streptococcus pneumoniae JJA 7679098 YP_002737172.1 CDS SPJ_2193 NC_012466.1 2044541 2045944 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; rhamnulokinase (Rhamnulose kinase) complement(2044541..2045944) Streptococcus pneumoniae JJA 7678621 YP_002737173.1 CDS SPJ_2194 NC_012466.1 2046120 2046893 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; regulator of fucose operon 2046120..2046893 Streptococcus pneumoniae JJA 7680370 YP_002737174.1 CDS SPJ_2195 NC_012466.1 2048064 2049569 R identified by match to protein family HMM PF01297; match to protein family HMM PF09223; zinc-binding lipoprotein AdcA complement(2048064..2049569) Streptococcus pneumoniae JJA 7679900 YP_002737175.1 CDS SPJ_2196 NC_012466.1 2049579 2050385 R identified by match to protein family HMM PF00950; zinc ABC transporter permease complement(2049579..2050385) Streptococcus pneumoniae JJA 7679578 YP_002737176.1 CDS SPJ_2197 NC_012466.1 2050378 2051082 R identified by match to protein family HMM PF00005; zinc transport system ATP-binding protein AdcC complement(2050378..2051082) Streptococcus pneumoniae JJA 7678798 YP_002737177.1 CDS SPJ_2198 NC_012466.1 2051082 2051522 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF01978; match to protein family HMM PF08279; putative transcriptional repressor complement(2051082..2051522) Streptococcus pneumoniae JJA 7678645 YP_002737178.1 CDS SPJ_2199 NC_012466.1 2051507 2051644 D hypothetical protein 2051507..2051644 Streptococcus pneumoniae JJA 7678448 YP_002737179.1 CDS SPJ_2200 NC_012466.1 2051677 2052945 R identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; D-alanine transfer from undecaprenol-phosphate to the poly complement(2051677..2052945) Streptococcus pneumoniae JJA 7680150 YP_002737180.1 CDS SPJ_2201 NC_012466.1 2053029 2053166 R undecaprenol-phosphate-poly complement(2053029..2053166) Streptococcus pneumoniae JJA 7679957 YP_002737181.1 CDS dltC NC_012466.1 2053159 2053398 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(2053159..2053398) Streptococcus pneumoniae JJA 7679479 YP_002737182.1 CDS SPJ_2203 NC_012466.1 2053412 2054656 R identified by match to protein family HMM PF03062; protein DltB complement(2053412..2054656) Streptococcus pneumoniae JJA 7678713 YP_002737183.1 CDS dltA NC_012466.1 2054653 2056203 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(2054653..2056203) Streptococcus pneumoniae JJA 7679615 YP_002737184.1 CDS SPJ_2205 NC_012466.1 2056224 2056355 R hypothetical protein complement(2056224..2056355) Streptococcus pneumoniae JJA 7678849 YP_002737185.1 CDS SPJ_2206 NC_012466.1 2056669 2057574 R permease of the major facilitator superfamily complement(2056669..2057574) Streptococcus pneumoniae JJA 7678398 YP_002737186.1 CDS SPJ_2207 NC_012466.1 2058303 2059580 R identified by match to protein family HMM PF00078; match to protein family HMM PF08388; GBSi1, group II intron, maturase complement(2058303..2059580) Streptococcus pneumoniae JJA 7680103 YP_002737187.1 CDS SPJ_2208 NC_012466.1 2060663 2061322 D hypothetical protein 2060663..2061322 Streptococcus pneumoniae JJA 7679869 YP_002737188.1 CDS SPJ_2209 NC_012466.1 2061409 2061555 R identified by Glimmer3; putative; hypothetical protein complement(2061409..2061555) Streptococcus pneumoniae JJA 7679049 YP_002737189.1 CDS SPJ_2210 NC_012466.1 2061714 2061830 D identified by Glimmer3; putative; hypothetical protein 2061714..2061830 Streptococcus pneumoniae JJA 7679981 YP_002737190.1 CDS SPJ_2211 NC_012466.1 2061909 2062613 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(2061909..2062613) Streptococcus pneumoniae JJA 7680468 YP_002737191.1 CDS SPJ_2212 NC_012466.1 2062683 2064509 R identified by match to protein family HMM PF01266; alpha-glycerophosphate oxidase (Glycerol-3-phosphateoxidase) (Exported protein 6) complement(2062683..2064509) Streptococcus pneumoniae JJA 7678781 YP_002737192.1 CDS glpK NC_012466.1 2064551 2066059 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(2064551..2066059) Streptococcus pneumoniae JJA 7679293 YP_002737193.1 CDS SPJ_2214 NC_012466.1 2066218 2067627 R identified by match to protein family HMM PF05043; M protein trans-acting positive regulator (MGA) complement(2066218..2067627) Streptococcus pneumoniae JJA 7678771 YP_002737194.1 CDS hslO NC_012466.1 2067810 2068682 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2067810..2068682 Streptococcus pneumoniae JJA 7680480 YP_002737195.1 CDS SPJ_2216 NC_012466.1 2068669 2069649 D identified by match to protein family HMM PF00724; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 2068669..2069649 Streptococcus pneumoniae JJA 7678897 YP_002737196.1 CDS SPJ_2217 NC_012466.1 2069879 2071678 R identified by match to protein family HMM PF01473; surface protein PspC complement(2069879..2071678) Streptococcus pneumoniae JJA 7678988 YP_002737197.1 CDS SPJ_2218 NC_012466.1 2072057 2072584 R identified by match to protein family HMM PF04140; hypothetical protein complement(2072057..2072584) Streptococcus pneumoniae JJA 7679608 YP_002737198.1 CDS SPJ_2219 NC_012466.1 2072667 2074007 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase complement(2072667..2074007) Streptococcus pneumoniae JJA 7679964 YP_002737199.1 CDS SPJ_2220 NC_012466.1 2074004 2074657 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2074004..2074657) Streptococcus pneumoniae JJA 7679489 YP_002737200.1 CDS SPJ_2221 NC_012466.1 2074978 2077410 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB 1 complement(2074978..2077410) Streptococcus pneumoniae JJA 7680122 YP_002737201.1 CDS SPJ_2222 NC_012466.1 2077412 2077870 R identified by match to protein family HMM PF05848; transcriptional regulator CtsR complement(2077412..2077870) Streptococcus pneumoniae JJA 7679317 YP_002737202.1 CDS SPJ_2223 NC_012466.1 2077989 2078717 R identified by match to protein family HMM PF00005; anion ABC transporter ATP-binding protein complement(2077989..2078717) Streptococcus pneumoniae JJA 7679121 YP_002737203.1 CDS SPJ_2224 NC_012466.1 2078717 2079724 R identified by match to protein family HMM PF09084; ABC transporter substrate-binding protein complement(2078717..2079724) Streptococcus pneumoniae JJA 7678765 YP_002737204.1 CDS SPJ_2225 NC_012466.1 2079762 2080523 R identified by match to protein family HMM PF00528; ABC transporter permease complement(2079762..2080523) Streptococcus pneumoniae JJA 7679247 YP_002737205.1 CDS SPJ_2226 NC_012466.1 2080483 2080773 R hypothetical protein complement(2080483..2080773) Streptococcus pneumoniae JJA 7679912 YP_002737206.1 CDS SPJ_2227 NC_012466.1 2081029 2082147 R identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08460; choline binding protein D complement(2081029..2082147) Streptococcus pneumoniae JJA 7680229 YP_002737207.1 CDS SPJ_2228 NC_012466.1 2082236 2082502 R identified by match to protein family HMM PF06257; hypothetical protein complement(2082236..2082502) Streptococcus pneumoniae JJA 7680264 YP_002737208.1 CDS dnaB NC_012466.1 2082504 2083856 R unwinds double stranded DNA; replicative DNA helicase complement(2082504..2083856) Streptococcus pneumoniae JJA 7678436 YP_002737209.1 CDS rplI NC_012466.1 2083900 2084352 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2083900..2084352) Streptococcus pneumoniae JJA 7678672 YP_002737210.1 CDS SPJ_2231 NC_012466.1 2084349 2086322 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH subfamily 1 protein complement(2084349..2086322) Streptococcus pneumoniae JJA 7679407 YP_002737211.1 CDS SPJ_2232 NC_012466.1 2086458 2087006 R identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosome-associated protein Y complement(2086458..2087006) Streptococcus pneumoniae JJA 7679658 YP_002737212.1 CDS SPJ_2233 NC_012466.1 2087086 2087748 R putative competence protein ComF complement(2087086..2087748) Streptococcus pneumoniae JJA 7680344 YP_002737213.1 CDS SPJ_2234 NC_012466.1 2087745 2089043 R identified by match to protein family HMM PF00271; match to protein family HMM PF04851; superfamily II ATP-dependent DNA/RNA helicase required for DNA uptake complement(2087745..2089043) Streptococcus pneumoniae JJA 7679647 YP_002737214.1 CDS SPJ_2235 NC_012466.1 2089099 2089734 D identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 2089099..2089734 Streptococcus pneumoniae JJA 7680239 YP_002737215.1 CDS cysK NC_012466.1 2090019 2090939 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 2090019..2090939 Streptococcus pneumoniae JJA 7678404 YP_002737216.1 CDS SPJ_2237 NC_012466.1 2091136 2091534 R identified by match to protein family HMM PF03050; transposase complement(2091136..2091534) Streptococcus pneumoniae JJA 7678996 YP_002737217.1 CDS SPJ_2238 NC_012466.1 2091654 2091812 D transposase family protein 2091654..2091812 Streptococcus pneumoniae JJA 7679285 YP_002737218.1 CDS SPJ_2239 NC_012466.1 2091967 2092182 R identified by match to protein family HMM PF05717; IS66 family element, Orf2 complement(2091967..2092182) Streptococcus pneumoniae JJA 7680373 YP_002737219.1 CDS tsf NC_012466.1 2092536 2093576 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2092536..2093576) Streptococcus pneumoniae JJA 7678432 YP_002737220.1 CDS rpsB NC_012466.1 2093655 2094434 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2093655..2094434) Streptococcus pneumoniae JJA 7678790 YP_002737221.1 CDS SPJ_2242 NC_012466.1 2094658 2095836 R identified by match to protein family HMM PF05257; general stress protein GSP-781 complement(2094658..2095836) Streptococcus pneumoniae JJA 7679675 YP_002737222.1 CDS mreD NC_012466.1 2095930 2096424 R identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426; rod shape-determining protein MreD complement(2095930..2096424) Streptococcus pneumoniae JJA 7680290 YP_002737223.1 CDS mreC NC_012466.1 2096424 2097242 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2096424..2097242) Streptococcus pneumoniae JJA 7678959 YP_002737224.1 CDS SPJ_2245 NC_012466.1 2097301 2098095 R identified by match to protein family HMM PF02361; ABC transporter permease complement(2097301..2098095) Streptococcus pneumoniae JJA 7679745 YP_002737225.1 CDS cbiO NC_012466.1 2098088 2098927 R with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2098088..2098927) Streptococcus pneumoniae JJA 7680456 YP_002737226.1 CDS cbiO NC_012466.1 2098912 2099739 R with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2098912..2099739) Streptococcus pneumoniae JJA 7678490 YP_002737227.1 CDS pgsA NC_012466.1 2099736 2100281 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2099736..2100281) Streptococcus pneumoniae JJA 7678925 YP_002737228.1 CDS SPJ_2249 NC_012466.1 2100292 2101113 R hypothetical protein complement(2100292..2101113) Streptococcus pneumoniae JJA 7680429 YP_002737229.1 CDS SPJ_2250 NC_012466.1 2101155 2102438 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; peptidase, M16 family complement(2101155..2102438) Streptococcus pneumoniae JJA 7680458 YP_002737230.1 CDS SPJ_2251 NC_012466.1 2102435 2103685 R identified by match to protein family HMM PF05193; peptidase, M16 family complement(2102435..2103685) Streptococcus pneumoniae JJA 7679230 YP_002737231.1 CDS SPJ_2252 NC_012466.1 2103844 2104212 D identified by match to protein family HMM TIGR02988; S4 domain protein YaaA, putative 2103844..2104212 Streptococcus pneumoniae JJA 7678613 YP_002737232.1 CDS recF NC_012466.1 2104215 2105312 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2104215..2105312 Streptococcus pneumoniae JJA 7680177 YP_002737233.1 CDS guaB NC_012466.1 2105363 2106841 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2105363..2106841) Streptococcus pneumoniae JJA 7680412 YP_002737234.1 CDS trpS NC_012466.1 2106993 2108018 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(2106993..2108018) Streptococcus pneumoniae JJA 7678554 YP_002737235.1 CDS SPJ_2256 NC_012466.1 2108224 2109846 D identified by match to protein family HMM PF00005; ATPase component of ABC transporters with duplicated ATPase domains 2108224..2109846 Streptococcus pneumoniae JJA 7679181 YP_002737236.1 CDS SPJ_2257 NC_012466.1 2109908 2112460 D ABC transporter permease 2109908..2112460 Streptococcus pneumoniae JJA 7679506 YP_002737237.1 CDS SPJ_2258 NC_012466.1 2112561 2112875 R phage infection protein complement(2112561..2112875) Streptococcus pneumoniae JJA 7679491 YP_002737238.1 CDS SPJ_2259 NC_012466.1 2112903 2113241 R phage infection protein complement(2112903..2113241) Streptococcus pneumoniae JJA 7679669 YP_002737239.1 CDS SPJ_2260 NC_012466.1 2113326 2114093 R hypothetical protein complement(2113326..2114093) Streptococcus pneumoniae JJA 7679806 YP_002737240.1 CDS SPJ_2261 NC_012466.1 2114272 2114814 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2114272..2114814 Streptococcus pneumoniae JJA 7679440 YP_002737241.1 CDS SPJ_2264 NC_012466.1 2115057 2115809 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; response regulator complement(2115057..2115809) Streptococcus pneumoniae JJA 7680605 YP_002737242.1 CDS SPJ_2265 NC_012466.1 2115806 2117131 R identified by match to protein family HMM PF02518; ComD complement(2115806..2117131) Streptococcus pneumoniae JJA 7680169 YP_002737243.1 CDS SPJ_2266 NC_012466.1 2117152 2117277 R identified by match to protein family HMM PF03047; hypothetical protein complement(2117152..2117277) Streptococcus pneumoniae JJA 7678538 YP_002737244.1 CDS SPJ_2268 NC_012466.1 2117559 2118038 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2117559..2118038) Streptococcus pneumoniae JJA 7680562 YP_002737245.1 CDS SPJ_2269 NC_012466.1 2118221 2119402 D identified by match to protein family HMM PF00089; trypsin domain protein 2118221..2119402 Streptococcus pneumoniae JJA 7680335 YP_002737246.1 CDS SPJ_2270 NC_012466.1 2119460 2120218 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 2119460..2120218 Streptococcus pneumoniae JJA 7680023 SPJ_0015 tRNA SPJ_0015 NC_012466.1 15025 15099 D tRNA-Glu 15025..15099 Streptococcus pneumoniae JJA 7678400 SPJ_0017 tRNA SPJ_0017 NC_012466.1 16944 17021 D tRNA-Ala 16944..17021 Streptococcus pneumoniae JJA 7680617 SPJ_0021 tRNA SPJ_0021 NC_012466.1 20241 20317 D tRNA-Asn 20241..20317 Streptococcus pneumoniae JJA 7680616 SPJ_0799 tRNA SPJ_0799 NC_012466.1 764653 764736 D tRNA-Tyr 764653..764736 Streptococcus pneumoniae JJA 7679952 SPJ_0800 tRNA SPJ_0800 NC_012466.1 764743 764817 D tRNA-Gln 764743..764817 Streptococcus pneumoniae JJA 7680606 SPJ_0815 tRNA SPJ_0815 NC_012466.1 779296 779388 R tRNA-Ser complement(779296..779388) Streptococcus pneumoniae JJA 7678824 SPJ_0953 tRNA SPJ_0953 NC_012466.1 911215 911290 D tRNA-Thr 911215..911290 Streptococcus pneumoniae JJA 7680418 SPJ_1162 tRNA SPJ_1162 NC_012466.1 1123578 1123654 R tRNA-Arg complement(1123578..1123654) Streptococcus pneumoniae JJA 7679082 SPJ_1208 tRNA SPJ_1208 NC_012466.1 1167805 1167879 R tRNA-Arg complement(1167805..1167879) Streptococcus pneumoniae JJA 7679499 SPJ_1488 tRNA SPJ_1488 NC_012466.1 1414890 1414980 R tRNA-Leu complement(1414890..1414980) Streptococcus pneumoniae JJA 7678494 SPJ_1692 tRNA SPJ_1692 NC_012466.1 1619511 1619588 D tRNA-Lys 1619511..1619588 Streptococcus pneumoniae JJA 7680322 SPJ_1812 tRNA SPJ_1812 NC_012466.1 1731143 1731235 R tRNA-Ser complement(1731143..1731235) Streptococcus pneumoniae JJA 7678493 SPJ_1813 tRNA SPJ_1813 NC_012466.1 1731237 1731315 R tRNA-Ile complement(1731237..1731315) Streptococcus pneumoniae JJA 7680589 SPJ_1814 tRNA SPJ_1814 NC_012466.1 1731347 1731420 R tRNA-Gly complement(1731347..1731420) Streptococcus pneumoniae JJA 7680596 SPJ_1815 tRNA SPJ_1815 NC_012466.1 1731437 1731512 R tRNA-Phe complement(1731437..1731512) Streptococcus pneumoniae JJA 7680566 SPJ_1816 tRNA SPJ_1816 NC_012466.1 1731513 1731589 R tRNA-Met complement(1731513..1731589) Streptococcus pneumoniae JJA 7680586 SPJ_1817 tRNA SPJ_1817 NC_012466.1 1731600 1731692 R tRNA-Ser complement(1731600..1731692) Streptococcus pneumoniae JJA 7680556 SPJ_1818 tRNA SPJ_1818 NC_012466.1 1731700 1731776 R tRNA-Met complement(1731700..1731776) Streptococcus pneumoniae JJA 7680577 SPJ_1819 tRNA SPJ_1819 NC_012466.1 1731786 1731864 R tRNA-Met complement(1731786..1731864) Streptococcus pneumoniae JJA 7680587 SPJ_1820 tRNA SPJ_1820 NC_012466.1 1731865 1731943 R tRNA-Pro complement(1731865..1731943) Streptococcus pneumoniae JJA 7680565 SPJ_1821 tRNA SPJ_1821 NC_012466.1 1731955 1732031 R tRNA-Arg complement(1731955..1732031) Streptococcus pneumoniae JJA 7680574 SPJ_1822 tRNA SPJ_1822 NC_012466.1 1732038 1732126 R tRNA-Leu complement(1732038..1732126) Streptococcus pneumoniae JJA 7680553 SPJ_1823 tRNA SPJ_1823 NC_012466.1 1732131 1732205 R tRNA-Gly complement(1732131..1732205) Streptococcus pneumoniae JJA 7680555 SPJ_1824 tRNA SPJ_1824 NC_012466.1 1732225 1732300 R tRNA-Thr complement(1732225..1732300) Streptococcus pneumoniae JJA 7680600 SPJ_1825 tRNA SPJ_1825 NC_012466.1 1732315 1732401 R tRNA-Leu complement(1732315..1732401) Streptococcus pneumoniae JJA 7680585 SPJ_1826 tRNA SPJ_1826 NC_012466.1 1732403 1732478 R tRNA-Lys complement(1732403..1732478) Streptococcus pneumoniae JJA 7680579 SPJ_1827 tRNA SPJ_1827 NC_012466.1 1732503 1732575 R tRNA-Asp complement(1732503..1732575) Streptococcus pneumoniae JJA 7680603 SPJ_2273 tRNA SPJ_2273 NC_012466.1 1732578 1732650 R tRNA-Val complement(1732578..1732650) Streptococcus pneumoniae JJA 7680598 SPJ_1831 tRNA SPJ_1831 NC_012466.1 1735869 1735946 R tRNA-Ala complement(1735869..1735946) Streptococcus pneumoniae JJA 7680612 SPJ_1833 tRNA SPJ_1833 NC_012466.1 1737791 1737865 R tRNA-Glu complement(1737791..1737865) Streptococcus pneumoniae JJA 7680609 SPJ_1955 tRNA SPJ_1955 NC_012466.1 1831717 1831792 D tRNA-Cys 1831717..1831792 Streptococcus pneumoniae JJA 7678746 SPJ_2000 tRNA SPJ_2000 NC_012466.1 1869536 1869614 R tRNA-Pro complement(1869536..1869614) Streptococcus pneumoniae JJA 7680213 SPJ_2001 tRNA SPJ_2001 NC_012466.1 1869626 1869702 R tRNA-Arg complement(1869626..1869702) Streptococcus pneumoniae JJA 7680554 SPJ_2002 tRNA SPJ_2002 NC_012466.1 1869709 1869797 R tRNA-Leu complement(1869709..1869797) Streptococcus pneumoniae JJA 7680550 SPJ_2003 tRNA SPJ_2003 NC_012466.1 1869802 1869876 R tRNA-Gly complement(1869802..1869876) Streptococcus pneumoniae JJA 7680591 SPJ_2004 tRNA SPJ_2004 NC_012466.1 1869896 1869971 R tRNA-Thr complement(1869896..1869971) Streptococcus pneumoniae JJA 7680597 SPJ_2005 tRNA SPJ_2005 NC_012466.1 1869986 1870072 R tRNA-Leu complement(1869986..1870072) Streptococcus pneumoniae JJA 7680572 SPJ_2006 tRNA SPJ_2006 NC_012466.1 1870074 1870149 R tRNA-Lys complement(1870074..1870149) Streptococcus pneumoniae JJA 7680592 SPJ_2007 tRNA SPJ_2007 NC_012466.1 1870174 1870246 R tRNA-Asp complement(1870174..1870246) Streptococcus pneumoniae JJA 7680569 SPJ_2275 tRNA SPJ_2275 NC_012466.1 1870249 1870321 R tRNA-Val complement(1870249..1870321) Streptococcus pneumoniae JJA 7680602 SPJ_2011 tRNA SPJ_2011 NC_012466.1 1873540 1873617 R tRNA-Ala complement(1873540..1873617) Streptococcus pneumoniae JJA 7680611 SPJ_2013 tRNA SPJ_2013 NC_012466.1 1875462 1875536 R tRNA-Glu complement(1875462..1875536) Streptococcus pneumoniae JJA 7680614 SPJ_2074 tRNA SPJ_2074 NC_012466.1 1931342 1931430 R tRNA-Leu complement(1931342..1931430) Streptococcus pneumoniae JJA 7679298 SPJ_2075 tRNA SPJ_2075 NC_012466.1 1931435 1931511 R tRNA-Gln complement(1931435..1931511) Streptococcus pneumoniae JJA 7680571 SPJ_2076 tRNA SPJ_2076 NC_012466.1 1931520 1931597 R tRNA-His complement(1931520..1931597) Streptococcus pneumoniae JJA 7680564 SPJ_2077 tRNA SPJ_2077 NC_012466.1 1931611 1931683 R tRNA-Trp complement(1931611..1931683) Streptococcus pneumoniae JJA 7680595 SPJ_2274 tRNA SPJ_2274 NC_012466.1 1931686 1931766 R tRNA-Tyr complement(1931686..1931766) Streptococcus pneumoniae JJA 7680599 SPJ_2078 tRNA SPJ_2078 NC_012466.1 1931776 1931851 R tRNA-Phe complement(1931776..1931851) Streptococcus pneumoniae JJA 7680573 SPJ_2079 tRNA SPJ_2079 NC_012466.1 1931852 1931928 R tRNA-Met complement(1931852..1931928) Streptococcus pneumoniae JJA 7680558 SPJ_2080 tRNA SPJ_2080 NC_012466.1 1931939 1932031 R tRNA-Ser complement(1931939..1932031) Streptococcus pneumoniae JJA 7680601 SPJ_2081 tRNA SPJ_2081 NC_012466.1 1932110 1932188 R tRNA-Ile complement(1932110..1932188) Streptococcus pneumoniae JJA 7680567 SPJ_2082 tRNA SPJ_2082 NC_012466.1 1932218 1932293 R tRNA-Gly complement(1932218..1932293) Streptococcus pneumoniae JJA 7680563 SPJ_2083 tRNA SPJ_2083 NC_012466.1 1932295 1932370 R tRNA-Val complement(1932295..1932370) Streptococcus pneumoniae JJA 7680604 SPJ_2087 tRNA SPJ_2087 NC_012466.1 1935589 1935666 R tRNA-Ala complement(1935589..1935666) Streptococcus pneumoniae JJA 7680618 SPJ_2089 tRNA SPJ_2089 NC_012466.1 1937511 1937585 R tRNA-Glu complement(1937511..1937585) Streptococcus pneumoniae JJA 7680608 SPJ_2262 tRNA SPJ_2262 NC_012466.1 2114852 2114928 R tRNA-Asn complement(2114852..2114928) Streptococcus pneumoniae JJA 7678716 SPJ_2263 tRNA SPJ_2263 NC_012466.1 2114931 2115005 R tRNA-Glu complement(2114931..2115005) Streptococcus pneumoniae JJA 7680560 SPJ_2267 tRNA SPJ_2267 NC_012466.1 2117439 2117515 R tRNA-Arg complement(2117439..2117515) Streptococcus pneumoniae JJA 7678753 SPJ_0016 rRNA rrs1 NC_012466.1 15361 16818 D 16S ribosomal RNA 15361..16818 Streptococcus pneumoniae JJA 7680575 SPJ_0019 rRNA rrl1 NC_012466.1 17142 20043 D 23S ribosomal RNA 17142..20043 Streptococcus pneumoniae JJA 7680581 SPJ_0020 rRNA rrf1 NC_012466.1 20120 20235 D 5S ribosomal RNA 20120..20235 Streptococcus pneumoniae JJA 7680615 SPJ_1828 rRNA rrf2 NC_012466.1 1732655 1732770 R 5S ribosomal RNA complement(1732655..1732770) Streptococcus pneumoniae JJA 7680549 SPJ_1829 rRNA rrl2 NC_012466.1 1732847 1735748 R 23S ribosomal RNA complement(1732847..1735748) Streptococcus pneumoniae JJA 7680610 SPJ_1832 rRNA rrs2 NC_012466.1 1736072 1737529 R 16S ribosomal RNA complement(1736072..1737529) Streptococcus pneumoniae JJA 7680552 SPJ_2008 rRNA rrf3 NC_012466.1 1870326 1870441 R 5S ribosomal RNA complement(1870326..1870441) Streptococcus pneumoniae JJA 7680607 SPJ_2009 rRNA rrl3 NC_012466.1 1870518 1873419 R 23S ribosomal RNA complement(1870518..1873419) Streptococcus pneumoniae JJA 7680619 SPJ_2012 rRNA rrs3 NC_012466.1 1873743 1875200 R 16S ribosomal RNA complement(1873743..1875200) Streptococcus pneumoniae JJA 7680583 SPJ_2084 rRNA rrf4 NC_012466.1 1932375 1932490 R 5S ribosomal RNA complement(1932375..1932490) Streptococcus pneumoniae JJA 7680580 SPJ_2085 rRNA rrl4 NC_012466.1 1932567 1935468 R 23S ribosomal RNA complement(1932567..1935468) Streptococcus pneumoniae JJA 7680613 SPJ_2088 rRNA rrs4 NC_012466.1 1935792 1937249 R 16S ribosomal RNA complement(1935792..1937249) Streptococcus pneumoniae JJA 7680551