-- dump date 20140620_085321 -- class Genbank::CDS -- table cds_note -- id note YP_002741522.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002741523.1 binds the polymerase to DNA and acts as a sliding clamp YP_002741524.1 identified by match to protein family HMM PF06107 YP_002741526.1 identified by glimmer; putative YP_002741527.1 identified by glimmer; putative YP_002741529.1 identified by glimmer; putative YP_002741531.1 identified by glimmer; putative YP_002741532.1 identified by match to protein family HMM PF08706; match to protein family HMM TIGR01613 YP_002741533.1 identified by match to protein family HMM PF08708 YP_002741534.1 identified by similarity to GB:AAV62370.1 YP_002741536.1 identified by glimmer; putative YP_002741537.1 identified by glimmer; putative YP_002741540.1 identified by glimmer; putative YP_002741541.1 identified by glimmer; putative YP_002741542.1 identified by glimmer; putative YP_002741543.1 identified by glimmer; putative YP_002741545.1 identified by glimmer; putative YP_002741547.1 identified by glimmer; putative YP_002741548.1 identified by match to protein family HMM PF01609 YP_002741550.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381 YP_002741552.1 identified by match to protein family HMM PF02661 YP_002741553.1 identified by glimmer; putative YP_002741555.1 identified by similarity to GB:CAG39798.1 YP_002741558.1 identified by match to protein family HMM PF00589 YP_002741559.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002741560.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002741561.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002741562.1 identified by match to protein family HMM PF01479 YP_002741563.1 identified by match to protein family HMM PF04977 YP_002741566.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002741567.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002741568.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_002741571.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002741572.1 identified by match to protein family HMM PF00383 YP_002741573.1 catalyzes the formation of dUMP from dUTP YP_002741574.1 identified by match to protein family HMM PF00300 YP_002741575.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002741576.1 identified by match to protein family HMM PF00484 YP_002741578.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002741580.1 identified by glimmer; putative YP_002741582.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002741583.1 identified by match to protein family HMM PF02629 YP_002741584.1 identified by match to protein family HMM PF03601 YP_002741585.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci YP_002741586.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002741587.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002741590.1 identified by match to protein family HMM TIGR01847 YP_002741591.1 identified by glimmer; putative YP_002741592.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_002741593.1 identified by match to protein family HMM TIGR01000 YP_002741594.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002741596.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_002741597.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002741598.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002741599.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002741600.1 identified by match to protein family HMM PF04892 YP_002741601.1 involved in de novo purine biosynthesis YP_002741602.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002741603.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002741604.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002741606.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002741607.1 identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002741608.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002741609.1 identified by match to protein family HMM PF01301; match to protein family HMM PF02449 YP_002741610.1 identified by match to protein family HMM PF03830 YP_002741611.1 identified by match to protein family HMM PF03609 YP_002741612.1 identified by match to protein family HMM PF03613 YP_002741613.1 identified by match to protein family HMM PF03610 YP_002741614.1 identified by match to protein family HMM PF01380 YP_002741615.1 identified by match to protein family HMM PF01263 YP_002741616.1 identified by match to protein family HMM PF00903 YP_002741617.1 identified by match to protein family HMM PF02583 YP_002741619.1 identified by match to protein family HMM PF00581 YP_002741621.1 identified by match to protein family HMM PF01048 YP_002741622.1 identified by glimmer; putative YP_002741623.1 identified by match to protein family HMM PF02386 YP_002741624.1 identified by match to protein family HMM PF02254 YP_002741625.1 identified by glimmer; putative YP_002741626.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002741627.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002741628.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002741629.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002741632.1 identified by match to protein family HMM PF00528 YP_002741633.1 identified by match to protein family HMM PF00528 YP_002741634.1 identified by match to protein family HMM PF01547 YP_002741635.1 identified by match to protein family HMM PF00581 YP_002741637.1 identified by glimmer; putative YP_002741638.1 identified by match to protein family HMM PF01609 YP_002741639.1 identified by glimmer; putative YP_002741644.1 identified by match to protein family HMM PF03551 YP_002741645.1 identified by match to protein family HMM PF07690 YP_002741646.1 identified by match to protein family HMM PF00535 YP_002741647.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002741648.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002741649.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002741650.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002741651.1 identified by match to protein family HMM PF01476 YP_002741653.1 identified by match to protein family HMM TIGR01653 YP_002741654.1 identified by match to protein family HMM TIGR01654 YP_002741655.1 identified by match to protein family HMM PF00005 YP_002741656.1 identified by match to protein family HMM PF00497 YP_002741657.1 identified by match to protein family HMM PF00764 YP_002741660.1 identified by match to protein family HMM PF01381 YP_002741673.1 identified by match to protein family HMM PF01473 YP_002741674.1 identified by glimmer; putative YP_002741675.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002741676.1 identified by match to protein family HMM PF00293 YP_002741677.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002741679.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002741680.1 identified by match to protein family HMM PF07288 YP_002741681.1 identified by glimmer; putative YP_002741682.1 identified by match to protein family HMM TIGR01847 YP_002741684.1 identified by match to protein family HMM PF00814 YP_002741685.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002741686.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002741687.1 identified by match to protein family HMM PF00535 YP_002741688.1 identified by match to protein family HMM PF00005 YP_002741689.1 identified by glimmer; putative YP_002741692.1 identified by match to protein family HMM TIGR01716 YP_002741693.1 identified by glimmer; putative YP_002741694.1 identified by match to protein family HMM PF02517 YP_002741695.1 identified by match to protein family HMM PF07690 YP_002741696.1 identified by glimmer; putative YP_002741697.1 identified by match to protein family HMM PF03591 YP_002741698.1 identified by match to protein family HMM PF05437 YP_002741699.1 identified by match to protein family HMM PF00497 YP_002741700.1 identified by match to protein family HMM PF03180 YP_002741701.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_002741702.1 identified by match to protein family HMM PF00005 YP_002741703.1 identified by match to protein family HMM PF00528 YP_002741704.1 identified by match to protein family HMM TIGR02185 YP_002741705.1 identified by match to protein family HMM PF04854 YP_002741706.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_002741707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002741709.1 has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002741710.1 identified by match to protein family HMM PF01609 YP_002741713.1 identified by match to protein family HMM PF04397 YP_002741714.1 identified by glimmer; putative YP_002741715.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002741716.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002741717.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_002741718.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002741719.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002741720.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002741721.1 identified by match to protein family HMM PF03352 YP_002741722.1 identified by match to protein family HMM PF02517 YP_002741723.1 identified by match to protein family HMM PF02016 YP_002741724.1 identified by match to protein family HMM PF06570 YP_002741725.1 identified by match to protein family HMM PF01544 YP_002741726.1 identified by match to protein family HMM PF00589 YP_002741727.1 identified by match to protein family HMM PF04326 YP_002741728.1 identified by match to protein family HMM PF01381 YP_002741736.1 identified by match to protein family HMM PF08708 YP_002741737.1 identified by match to protein family HMM PF08706; match to protein family HMM TIGR01613 YP_002741738.1 identified by glimmer; putative YP_002741741.1 identified by match to protein family HMM PF08281 YP_002741742.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002741743.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002741744.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002741746.1 identified by match to protein family HMM PF06135 YP_002741747.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002741748.1 identified by match to protein family HMM PF06949 YP_002741749.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002741751.1 identified by match to protein family HMM PF00614 YP_002741753.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002741756.1 identified by match to protein family HMM PF00583 YP_002741757.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491 YP_002741758.1 identified by match to protein family HMM PF00485 YP_002741759.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002741760.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002741761.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002741762.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002741763.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002741764.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002741765.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002741766.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002741767.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002741768.1 one of the stabilizing components for the large ribosomal subunit YP_002741769.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002741770.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002741771.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002741772.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002741773.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002741774.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002741775.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002741776.1 binds 5S rRNA along with protein L5 and L25 YP_002741777.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002741778.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002741779.1 late assembly protein YP_002741780.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002741781.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002741782.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002741783.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002741784.2 truncated; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00416 YP_002741785.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002741786.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002741787.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002741788.1 ACT domain-containing protein YP_002741789.1 identified by match to protein family HMM PF05167 YP_002741790.1 identified by match to protein family HMM PF00300 YP_002741791.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002741792.1 identified by match to protein family HMM PF00165 YP_002741793.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002741794.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002741795.1 identified by match to protein family HMM PF04198 YP_002741796.1 identified by match to protein family HMM PF02255 YP_002741797.1 identified by match to protein family HMM PF02302 YP_002741798.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002741799.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_002741800.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies YP_002741801.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002741802.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002741803.1 identified by glimmer; putative YP_002741804.1 identified by match to protein family HMM PF00583 YP_002741805.1 identified by match to protein family HMM PF00583 YP_002741806.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002741807.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002741808.1 identified by match to protein family HMM PF01148 YP_002741809.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002741810.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002741811.1 identified by match to protein family HMM PF00232 YP_002741812.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002741813.1 identified by match to protein family HMM PF00296 YP_002741814.1 identified by match to protein family HMM PF00128; match to protein family HMM PF00746; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; match to protein family HMM TIGR02102 YP_002741815.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002741816.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002741817.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002741818.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002741819.1 identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384 YP_002741820.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002741822.1 identified by match to protein family HMM PF02073 YP_002741823.1 identified by match to protein family HMM PF04226 YP_002741824.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002741825.1 identified by match to protein family HMM PF03051 YP_002741826.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002741827.1 identified by match to protein family HMM PF03609 YP_002741828.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830 YP_002741829.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002741830.1 identified by glimmer; putative YP_002741831.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002741832.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002741833.1 identified by match to protein family HMM PF02517 YP_002741834.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002741835.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002741836.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002741837.1 identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498 YP_002741839.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002741840.1 forms a direct contact with the tRNA during translation YP_002741841.1 identified by match to protein family HMM PF00589 YP_002741842.1 identified by match to protein family HMM PF05930; match to protein family HMM TIGR01764 YP_002741844.1 identified by match to protein family HMM PF00149 YP_002741845.1 identified by match to protein family HMM PF00149 YP_002741846.1 identified by match to protein family HMM PF01580 YP_002741849.1 identified by glimmer; putative YP_002741852.1 identified by match to protein family HMM PF03992 YP_002741853.1 converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism YP_002741854.1 identified by match to protein family HMM PF03083 YP_002741855.1 required for cellobiose uptake and metabolism YP_002741856.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002741857.1 required for cellobiose uptake and metabolism YP_002741859.1 required for cellobiose uptake and metabolism YP_002741861.1 identified by match to protein family HMM PF01055 YP_002741862.1 identified by match to protein family HMM PF00255 YP_002741863.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02018; match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; match to protein family HMM TIGR01167 YP_002741864.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002741865.1 identified by match to protein family HMM PF00294 YP_002741866.1 identified by match to protein family HMM PF02502 YP_002741867.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002741868.1 identified by match to protein family HMM PF03610 YP_002741869.1 identified by match to protein family HMM PF07470 YP_002741870.1 identified by match to protein family HMM PF03830 YP_002741871.1 identified by match to protein family HMM PF03609 YP_002741872.1 identified by match to protein family HMM PF03613 YP_002741874.1 identified by match to protein family HMM PF07940 YP_002741875.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002741876.1 identified by glimmer; putative YP_002741877.1 identified by glimmer; putative YP_002741878.1 identified by glimmer; putative YP_002741879.1 identified by glimmer; putative YP_002741881.1 identified by match to protein family HMM PF01381 YP_002741882.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002741883.1 identified by match to protein family HMM TIGR02209 YP_002741884.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002741885.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002741886.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002741887.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002741888.1 identified by match to protein family HMM PF08903 YP_002741889.1 identified by match to protein family HMM PF00128 YP_002741890.1 identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002741891.1 identified by match to protein family HMM PF02811 YP_002741892.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006 YP_002741893.1 identified by match to protein family HMM TIGR01007 YP_002741894.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_002741895.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002741896.1 identified by match to protein family HMM PF04991 YP_002741897.1 identified by match to protein family HMM PF00535 YP_002741900.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002741901.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_002741902.1 identified by match to protein family HMM PF00908 YP_002741903.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002741904.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002741906.1 identified by match to protein family HMM PF00496 YP_002741907.1 identified by match to protein family HMM PF00754; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002741908.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002741909.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_002741910.1 identified by match to protein family HMM PF06908 YP_002741911.1 identified by match to protein family HMM PF05103 YP_002741912.1 identified by match to protein family HMM PF01170 YP_002741914.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002741915.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002741916.1 identified by match to protein family HMM PF01473 YP_002741917.1 identified by match to protein family HMM PF01473 YP_002741918.1 identified by match to protein family HMM PF07690 YP_002741919.1 identified by glimmer; putative YP_002741920.1 identified by glimmer; putative YP_002741921.1 identified by match to protein family HMM PF01473 YP_002741922.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549 YP_002741923.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240 YP_002741924.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220 YP_002741925.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002741927.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002741928.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002741929.1 identified by glimmer; putative YP_002741930.1 identified by glimmer; putative YP_002741931.1 identified by match to protein family HMM PF00089 YP_002741933.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002741934.1 identified by match to protein family HMM TIGR01448 YP_002741935.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002741936.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002741938.1 identified by match to protein family HMM PF02674 YP_002741939.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_002741940.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002741941.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002741942.1 identified by match to protein family HMM PF03595 YP_002741943.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002741944.1 identified by match to protein family HMM PF06115 YP_002741945.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_002741947.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002741948.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002741949.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002741950.1 carries the fatty acid chain in fatty acid biosynthesis YP_002741951.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_002741952.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002741953.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002741954.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002741955.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002741956.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002741957.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002741958.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002741959.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus YP_002741961.1 identified by glimmer; putative YP_002741962.1 identified by glimmer; putative YP_002741963.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002741964.1 identified by match to protein family HMM PF03780 YP_002741965.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002741967.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002741968.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002741969.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002741970.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002741971.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002741972.1 required for 70S ribosome assembly YP_002741973.1 identified by match to protein family HMM PF03780 YP_002741974.1 identified by match to protein family HMM PF02734 YP_002741975.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002741976.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002741977.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002741980.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002741983.1 identified by match to protein family HMM PF00005 YP_002741984.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002741987.1 identified by glimmer; putative YP_002741988.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002741990.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002741991.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002741992.1 identified by match to protein family HMM PF01610 YP_002741993.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08280 YP_002741994.1 identified by match to protein family HMM PF00092; match to protein family HMM PF05738 YP_002741995.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002741996.1 identified by glimmer; putative YP_002741997.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002741998.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002741999.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002742000.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002742004.1 identified by match to protein family HMM PF00480 YP_002742005.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002742007.1 identified by match to protein family HMM PF02255 YP_002742008.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_002742009.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378 YP_002742010.1 identified by match to protein family HMM PF02386 YP_002742011.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002742012.1 identified by match to protein family HMM PF01887 YP_002742013.1 identified by match to protein family HMM PF07155 YP_002742015.1 identified by match to protein family HMM PF00005 YP_002742016.1 identified by match to protein family HMM PF02361 YP_002742017.1 identified by match to protein family HMM PF00588 YP_002742019.1 identified by match to protein family HMM PF01569 YP_002742022.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_002742023.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002742024.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002742025.1 identified by match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF03644; match to protein family HMM PF07501; match to protein family HMM PF07523; match to protein family HMM PF07554; match to protein family HMM TIGR01167 YP_002742026.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002742028.1 identified by match to protein family HMM PF00376 YP_002742029.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002742031.1 identified by glimmer; putative YP_002742032.1 identified by match to protein family HMM PF01420 YP_002742033.1 identified by match to protein family HMM PF01420 YP_002742034.1 identified by match to protein family HMM PF02384 YP_002742035.1 identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463 YP_002742038.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002742039.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002742040.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002742041.1 identified by glimmer; putative YP_002742042.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002742045.1 identified by match to protein family HMM PF01230 YP_002742046.1 identified by match to protein family HMM PF00005 YP_002742047.1 identified by match to protein family HMM PF05975 YP_002742049.1 identified by match to protein family HMM PF01609 YP_002742050.1 identified by match to protein family HMM PF04397 YP_002742051.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002742053.1 identified by match to protein family HMM PF01609 YP_002742054.1 identified by match to protein family HMM TIGR01847 YP_002742055.1 identified by match to protein family HMM TIGR01000 YP_002742056.1 identified by match to protein family HMM TIGR01847 YP_002742057.1 identified by match to protein family HMM TIGR01847 YP_002742058.1 identified by match to protein family HMM PF02517 YP_002742061.1 identified by match to protein family HMM TIGR01847 YP_002742063.1 identified by match to protein family HMM PF02517 YP_002742064.1 identified by match to protein family HMM PF01636 YP_002742065.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002742066.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002742067.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002742068.1 identified by match to protein family HMM PF04296 YP_002742069.1 identified by match to protein family HMM PF01248 YP_002742070.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002742071.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002742075.1 identified by glimmer; putative YP_002742076.1 identified by match to protein family HMM PF08984 YP_002742077.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_002742078.1 identified by match to protein family HMM PF08930 YP_002742080.1 identified by glimmer; putative YP_002742081.1 identified by match to protein family HMM PF00583 YP_002742083.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002742085.1 identified by match to protein family HMM PF02661 YP_002742086.1 identified by match to protein family HMM PF00665 YP_002742090.1 identified by match to protein family HMM PF00232 YP_002742091.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002742092.1 identified by match to protein family HMM PF00583 YP_002742093.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002742094.1 identified by match to protein family HMM PF03372 YP_002742095.1 identified by match to protein family HMM PF01381 YP_002742096.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002742097.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002742098.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002742099.1 identified by match to protein family HMM TIGR01172 YP_002742100.1 identified by match to protein family HMM PF00583 YP_002742101.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002742102.1 identified by match to protein family HMM PF00636 YP_002742104.1 identified by glimmer; putative YP_002742105.1 identified by glimmer; putative YP_002742106.1 identified by glimmer; putative YP_002742107.1 identified by match to protein family HMM PF02687 YP_002742108.1 identified by match to protein family HMM PF00005 YP_002742109.1 identified by match to protein family HMM PF02687 YP_002742110.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002742111.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002742112.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002742113.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794 YP_002742114.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742115.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742116.1 identified by match to protein family HMM PF00497 YP_002742117.1 identified by match to protein family HMM PF00005 YP_002742118.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002742119.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002742120.1 identified by match to protein family HMM PF00756 YP_002742121.1 identified by match to protein family HMM PF02388 YP_002742122.1 identified by match to protein family HMM PF02388 YP_002742123.1 identified by match to protein family HMM PF00413 YP_002742124.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002742126.1 identified by match to protein family HMM PF00497 YP_002742127.1 identified by match to protein family HMM PF00881 YP_002742128.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002742129.1 identified by match to protein family HMM PF03167 YP_002742130.1 identified by glimmer; putative YP_002742131.1 identified by glimmer; putative YP_002742133.1 identified by match to protein family HMM PF05343 YP_002742134.1 identified by match to protein family HMM PF01230 YP_002742136.1 identified by glimmer; putative YP_002742137.1 binds directly to 23S ribosomal RNA YP_002742138.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002742142.1 identified by match to protein family HMM PF00005 YP_002742143.1 identified by match to protein family HMM PF06182 YP_002742144.1 identified by match to protein family HMM PF06182 YP_002742145.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF05922; match to protein family HMM PF06280; match to protein family HMM TIGR01167 YP_002742146.1 identified by match to protein family HMM PF00359 YP_002742149.1 identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002742150.1 identified by glimmer; putative YP_002742151.1 identified by glimmer; putative YP_002742152.1 identified by glimmer; putative YP_002742154.1 identified by match to protein family HMM PF06962 YP_002742156.1 identified by match to protein family HMM PF00999 YP_002742157.1 identified by match to protein family HMM PF03631 YP_002742158.1 identified by match to protein family HMM PF02683 YP_002742159.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002742160.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002742161.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002742162.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580 YP_002742163.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_002742164.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167 YP_002742165.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 YP_002742167.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05901; match to protein family HMM PF07553 YP_002742168.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_002742169.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002742171.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002742172.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002742174.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002742175.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002742176.1 identified by match to protein family HMM PF00126 YP_002742177.1 identified by match to protein family HMM PF06014 YP_002742178.1 identified by match to protein family HMM PF00581 YP_002742180.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002742181.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002742183.1 identified by match to protein family HMM TIGR01653 YP_002742184.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002742185.1 identified by match to protein family HMM PF00005 YP_002742186.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002742187.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002742188.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002742189.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002742190.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002742191.1 identified by glimmer; putative YP_002742193.1 identified by glimmer; putative YP_002742195.1 identified by match to protein family HMM PF00005 YP_002742197.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742198.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742200.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002742201.1 identified by match to protein family HMM PF01609 YP_002742202.1 identified by match to protein family HMM PF01070; match to protein family HMM TIGR02708 YP_002742203.1 identified by match to protein family HMM PF03070 YP_002742204.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002742205.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_002742207.1 identified by match to protein family HMM PF00005 YP_002742209.1 identified by match to protein family HMM PF03070 YP_002742210.1 identified by match to protein family HMM TIGR02359 YP_002742211.1 identified by match to protein family HMM PF02110 YP_002742212.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002742213.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002742214.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698 YP_002742217.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720 YP_002742218.1 identified by match to protein family HMM PF00903 YP_002742221.1 identified by glimmer; putative YP_002742223.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002742224.1 identified by match to protein family HMM PF00209 YP_002742225.1 identified by match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_002742226.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002742227.1 identified by match to protein family HMM PF00440 YP_002742228.1 identified by match to protein family HMM PF00383 YP_002742229.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002742230.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002742232.1 identified by match to protein family HMM PF01094 YP_002742233.1 identified by match to protein family HMM PF02653 YP_002742234.1 identified by match to protein family HMM PF02653 YP_002742235.1 identified by match to protein family HMM PF00005 YP_002742236.1 identified by match to protein family HMM PF00005 YP_002742237.1 identified by match to protein family HMM PF00571 YP_002742238.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002742239.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002742241.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003 YP_002742242.1 identified by match to protein family HMM PF03372 YP_002742243.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002742244.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002742246.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_002742247.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002742248.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002742249.1 identified by match to protein family HMM PF06265 YP_002742250.1 identified by match to protein family HMM TIGR00048 YP_002742251.1 identified by match to protein family HMM PF04892 YP_002742252.1 identified by match to protein family HMM PF00005 YP_002742253.1 identified by match to protein family HMM PF00160 YP_002742255.1 identified by glimmer; putative YP_002742256.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002742258.1 identified by match to protein family HMM PF01609 YP_002742260.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_002742262.1 identified by match to protein family HMM PF01522 YP_002742263.1 identified by match to protein family HMM PF00248 YP_002742265.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002742266.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002742267.1 identified by match to protein family HMM PF05979 YP_002742268.1 identified by match to protein family HMM PF03358 YP_002742270.1 identified by match to protein family HMM PF02424 YP_002742271.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002742272.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002742273.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002742274.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002742275.1 identified by match to protein family HMM PF08876 YP_002742276.1 identified by match to protein family HMM PF00583 YP_002742278.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002742279.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742280.1 identified by match to protein family HMM PF00005 YP_002742282.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002742283.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002742284.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002742286.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742287.1 identified by match to protein family HMM PF00657 YP_002742289.1 identified by match to protein family HMM PF00144 YP_002742290.1 identified by match to protein family HMM PF00892 YP_002742291.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002742292.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002742294.1 identified by match to protein family HMM PF00165 YP_002742295.1 identified by match to protein family HMM PF00005 YP_002742296.1 identified by match to protein family HMM PF00005 YP_002742297.1 identified by match to protein family HMM TIGR02185 YP_002742299.1 identified by match to protein family HMM PF00005 YP_002742300.1 identified by match to protein family HMM PF01555 YP_002742301.1 identified by match to protein family HMM PF01136 YP_002742303.1 identified by match to protein family HMM PF01136 YP_002742304.1 identified by match to protein family HMM PF00005 YP_002742306.1 identified by match to protein family HMM PF01381 YP_002742307.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM PF03328; match to protein family HMM TIGR01064 YP_002742308.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002742309.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002742310.1 identified by match to protein family HMM PF00583 YP_002742311.1 identified by match to protein family HMM PF01473 YP_002742312.1 identified by match to protein family HMM PF01609 YP_002742313.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002742314.1 identified by match to protein family HMM PF01182 YP_002742315.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002742316.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002742317.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002742318.1 identified by match to protein family HMM PF06103 YP_002742320.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002742321.1 identified by match to protein family HMM PF01643 YP_002742322.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_002742323.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002742324.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002742325.1 identified by match to protein family HMM PF05256 YP_002742326.1 identified by match to protein family HMM PF00459 YP_002742327.1 identified by match to protein family HMM PF01189 YP_002742329.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002742330.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002742331.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002742332.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002742333.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002742334.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002742335.1 identified by match to protein family HMM PF00497 YP_002742336.1 identified by match to protein family HMM PF00392 YP_002742337.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002742339.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002742340.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002742341.1 identified by match to protein family HMM PF00528 YP_002742342.1 identified by match to protein family HMM PF00528 YP_002742343.1 identified by match to protein family HMM PF01547 YP_002742344.1 identified by match to protein family HMM PF04525 YP_002742345.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002742346.1 converts 1,4-alpha-D-glucans to maltodextrin YP_002742347.1 identified by match to protein family HMM PF00005 YP_002742350.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_002742351.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002742352.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002742353.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002742354.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002742355.1 identified by match to protein family HMM PF06133 YP_002742356.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002742357.1 identified by match to protein family HMM PF01202 YP_002742358.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002742359.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002742360.1 identified by match to protein family HMM PF04991 YP_002742361.1 identified by match to protein family HMM PF00534 YP_002742362.1 identified by match to protein family HMM PF00535 YP_002742365.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002742366.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002742368.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002742369.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002742370.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002742371.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002742372.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002742373.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002742374.1 identified by glimmer; putative YP_002742375.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002742376.1 identified by glimmer; putative YP_002742379.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002742380.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002742381.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002742382.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805 YP_002742383.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002742384.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002742385.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002742386.1 identified by match to protein family HMM PF02037 YP_002742387.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742388.1 identified by match to protein family HMM PF01966 YP_002742389.1 identified by match to protein family HMM PF09148 YP_002742390.1 identified by match to protein family HMM PF04297; match to protein family HMM PF04967; match to protein family HMM PF08281 YP_002742391.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002742392.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002742393.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002742394.1 identified by match to protein family HMM PF04011 YP_002742395.1 putative metalloprotease YP_002742396.1 identified by match to protein family HMM PF00005 YP_002742397.1 identified by glimmer; putative YP_002742398.1 identified by match to protein family HMM PF02620 YP_002742399.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002742400.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002742401.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002742402.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002742403.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002742404.1 identified by match to protein family HMM PF04991 YP_002742405.1 required for phosphorylcholine incorporation in teichoic and lipoteichoic acids; identified by match to protein family HMM PF04991 YP_002742406.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002742407.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002742408.1 identified by match to protein family HMM PF08240 YP_002742409.1 identified by match to protein family HMM PF01633; match to protein family HMM PF01636 YP_002742410.1 identified by match to protein family HMM PF00892 YP_002742411.1 identified by match to protein family HMM PF00483 YP_002742412.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002742414.1 identified by match to protein family HMM PF04087 YP_002742415.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002742416.1 identified by match to protein family HMM PF04304 YP_002742417.1 identified by match to protein family HMM PF03932 YP_002742418.1 identified by match to protein family HMM PF04237 YP_002742419.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002742420.1 identified by match to protein family HMM PF06961 YP_002742422.1 identified by glimmer; putative YP_002742423.1 identified by glimmer; putative YP_002742424.1 identified by glimmer; putative YP_002742427.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_002742428.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002742429.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002742430.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742431.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742432.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002742433.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002742434.1 identified by match to protein family HMM PF00005 YP_002742435.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742436.1 identified by match to protein family HMM PF02517 YP_002742437.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002742439.1 identified by match to protein family HMM PF00583 YP_002742440.1 identified by match to protein family HMM PF00293 YP_002742441.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002742444.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. YP_002742445.1 identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114 YP_002742446.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002742447.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002742448.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002742449.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002742450.1 identified by match to protein family HMM PF00753 YP_002742452.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002742453.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_002742454.1 identified by match to protein family HMM PF01609 YP_002742455.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002742456.1 negatively supercoils closed circular double-stranded DNA YP_002742457.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002742458.1 identified by match to protein family HMM PF01226 YP_002742460.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002742461.1 identified by glimmer; putative YP_002742462.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002742463.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002742464.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002742465.1 identified by match to protein family HMM PF00348 YP_002742466.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002742467.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002742468.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002742469.1 identified by match to protein family HMM PF00149 YP_002742470.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002742472.1 identified by match to protein family HMM PF00359 YP_002742474.1 identified by match to protein family HMM PF01609 YP_002742475.1 identified by glimmer; putative YP_002742476.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_002742477.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_002742478.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_002742479.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_002742480.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002742481.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823 YP_002742483.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_002742485.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002742486.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002742487.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002742488.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_002742489.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002742490.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002742491.1 identified by glimmer; putative YP_002742492.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002742493.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002742494.1 identified by match to protein family HMM PF04270 YP_002742496.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002742498.1 identified by glimmer; putative YP_002742499.1 identified by match to protein family HMM TIGR02227 YP_002742501.1 identified by match to protein family HMM PF07170; match to protein family HMM TIGR03064 YP_002742502.1 identified by match to protein family HMM PF07170 YP_002742503.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_002742504.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_002742505.1 identified by match to protein family HMM PF04138 YP_002742506.1 identified by match to protein family HMM PF06177 YP_002742507.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002742508.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002742509.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002742510.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002742511.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002742512.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002742513.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387 YP_002742514.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_002742515.1 identified by match to protein family HMM PF00583 YP_002742516.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002742519.1 identified by match to protein family HMM PF06207 YP_002742520.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002742522.1 identified by match to protein family HMM PF01497 YP_002742523.1 identified by match to protein family HMM PF01032 YP_002742524.1 identified by match to protein family HMM PF01032 YP_002742525.1 identified by match to protein family HMM PF00005 YP_002742527.1 identified by match to protein family HMM PF03389 YP_002742528.1 identified by glimmer; putative YP_002742530.1 identified by match to protein family HMM TIGR01714 YP_002742534.1 identified by glimmer; putative YP_002742535.1 identified by match to protein family HMM PF03747 YP_002742536.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002742537.1 identified by glimmer; putative YP_002742538.1 identified by match to protein family HMM PF00583 YP_002742539.1 identified by glimmer; putative YP_002742542.1 identified by match to protein family HMM PF01098 YP_002742543.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002742544.1 identified by match to protein family HMM PF04392 YP_002742545.1 identified by match to protein family HMM PF02653 YP_002742546.1 identified by match to protein family HMM PF00005 YP_002742547.1 synthesizes RNA primers at the replication forks YP_002742548.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002742549.1 identified by match to protein family HMM PF01883 YP_002742550.1 identified by match to protein family HMM PF00534 YP_002742551.1 identified by match to protein family HMM PF00534 YP_002742552.1 identified by match to protein family HMM PF04024 YP_002742554.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002742556.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002742557.1 identified by match to protein family HMM PF00583 YP_002742558.1 identified by match to protein family HMM PF00571; match to protein family HMM PF07085; match to protein family HMM PF08279 YP_002742559.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_002742561.1 identified by match to protein family HMM PF01609 YP_002742562.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002742563.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002742564.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002742565.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002742567.1 identified by match to protein family HMM PF08866 YP_002742568.1 identified by match to protein family HMM PF00266 YP_002742569.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002742570.1 identified by match to protein family HMM PF01928 YP_002742571.1 identified by match to protein family HMM PF04607 YP_002742572.1 catalyzes the phosphorylation of NAD to NADP YP_002742573.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002742574.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002742575.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002742576.1 identified by match to protein family HMM PF06912 YP_002742577.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002742578.1 identified by match to protein family HMM PF04327 YP_002742579.1 involved in the peptidyltransferase reaction during translation YP_002742580.1 identified by glimmer; putative YP_002742582.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002742583.1 identified by match to protein family HMM PF02588 YP_002742584.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002742585.1 identified by match to protein family HMM PF00216 YP_002742586.1 identified by match to protein family HMM PF00005 YP_002742587.1 identified by match to protein family HMM TIGR01716 YP_002742588.1 identified by match to protein family HMM PF07690 YP_002742589.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002742590.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_002742591.1 identified by match to protein family HMM PF00171 YP_002742592.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002742593.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002742594.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092 YP_002742595.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002742596.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002742597.1 identified by match to protein family HMM PF07997 YP_002742598.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002742600.1 identified by match to protein family HMM PF01710 YP_002742601.1 identified by match to protein family HMM TIGR02774 YP_002742602.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002742604.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002742605.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002742606.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002742607.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080 YP_002742608.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_002742609.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002742610.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002742611.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain YP_002742612.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002742613.1 identified by match to protein family HMM PF00676 YP_002742614.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002742615.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002742616.1 identified by match to protein family HMM PF00293 YP_002742617.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002742618.1 identified by glimmer; putative YP_002742619.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002742620.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364 YP_002742621.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002742622.1 identified by match to protein family HMM PF01297 YP_002742623.1 identified by match to protein family HMM PF00324 YP_002742624.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002742625.1 identified by match to protein family HMM PF02683 YP_002742628.1 identified by glimmer; putative YP_002742629.1 identified by match to protein family HMM PF01710 YP_002742630.1 identified by match to protein family HMM PF03009 YP_002742631.1 3'-5' exonuclease of DNA polymerase III YP_002742632.1 identified by match to protein family HMM PF04394 YP_002742633.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002742635.1 identified by match to protein family HMM PF00293 YP_002742636.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002742637.1 identified by match to protein family HMM PF01183 YP_002742638.1 identified by match to protein family HMM PF04018 YP_002742639.1 identified by match to protein family HMM PF04073 YP_002742640.1 identified by match to protein family HMM PF00300 YP_002742641.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002742642.1 identified by match to protein family HMM PF01596; match to protein family HMM PF08241 YP_002742643.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002742644.1 identified by match to protein family HMM PF06054 YP_002742645.1 with TehA confers resistance to tellurite YP_002742646.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002742647.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002742648.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002742649.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002742650.1 identified by match to protein family HMM PF07690 YP_002742651.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002742652.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002742653.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002742654.1 identified by match to protein family HMM PF01219 YP_002742655.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002742656.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002742657.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01832 YP_002742658.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002742659.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002742660.1 identified by match to protein family HMM PF00903 YP_002742661.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002742662.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002742663.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002742665.1 identified by match to protein family HMM PF00005 YP_002742666.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002742667.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 YP_002742668.1 identified by match to protein family HMM PF00583 YP_002742670.1 identified by match to protein family HMM PF00583 YP_002742671.1 identified by glimmer; putative YP_002742672.1 identified by match to protein family HMM PF02562 YP_002742673.1 identified by match to protein family HMM PF06855 YP_002742675.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002742676.1 Catalyzes the phosphorylation of UMP to UDP YP_002742677.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002742678.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002742679.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_002742680.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. YP_002742681.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002742682.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002742683.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002742684.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002742685.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01473 YP_002742686.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002742687.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002742688.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002742690.1 identified by match to protein family HMM PF02517 YP_002742691.1 identified by glimmer; putative YP_002742692.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742693.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381 YP_002742694.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_002742695.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_002742696.1 identified by match to protein family HMM PF03435 YP_002742697.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002742698.1 identified by glimmer; putative YP_002742699.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742700.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742702.1 identified by match to protein family HMM PF00665 YP_002742703.1 identified by match to protein family HMM PF01988 YP_002742704.1 identified by match to protein family HMM PF02687 YP_002742705.1 identified by match to protein family HMM PF00005 YP_002742706.1 identified by glimmer; putative YP_002742707.1 identified by match to protein family HMM PF04024 YP_002742708.1 identified by match to protein family HMM PF03926 YP_002742709.1 identified by match to protein family HMM PF00575 YP_002742710.1 identified by glimmer; putative YP_002742711.1 identified by match to protein family HMM PF03773 YP_002742712.1 identified by match to protein family HMM PF09323 YP_002742714.1 identified by glimmer; putative YP_002742717.1 identified by match to protein family HMM PF01609 YP_002742718.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002742719.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002742720.1 Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002742721.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_002742722.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002742724.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002742725.1 identified by match to protein family HMM PF01420 YP_002742726.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002742727.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_002742729.1 identified by match to protein family HMM PF01420 YP_002742730.1 identified by match to protein family HMM PF02384 YP_002742731.1 identified by glimmer; putative YP_002742733.1 identified by glimmer; putative YP_002742734.1 identified by glimmer; putative YP_002742735.1 identified by match to protein family HMM PF00756 YP_002742736.1 Required for the synthesis of the thiazole moiety YP_002742737.1 identified by match to protein family HMM PF00266 YP_002742739.1 identified by match to protein family HMM PF01580 YP_002742740.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002742741.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002742742.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002742743.1 identified by match to protein family HMM PF01594 YP_002742744.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002742745.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_002742746.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002742747.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002742748.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_002742749.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002742750.1 identified by match to protein family HMM PF01610 YP_002742751.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002742753.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002742755.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002742756.1 identified by match to protein family HMM PF06166 YP_002742757.1 identified by match to protein family HMM PF06149 YP_002742759.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002742760.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002742762.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002742763.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002742764.1 identified by match to protein family HMM PF00665 YP_002742765.1 identified by match to protein family HMM PF02653 YP_002742766.1 identified by match to protein family HMM PF02653 YP_002742767.1 identified by match to protein family HMM PF00005 YP_002742768.1 identified by match to protein family HMM PF02608 YP_002742769.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002742770.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002742771.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002742772.1 identified by match to protein family HMM PF05175 YP_002742773.1 identified by glimmer; putative YP_002742774.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002742775.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002742777.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_002742779.1 identified by glimmer; putative YP_002742780.1 identified by glimmer; putative YP_002742781.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002742782.1 identified by match to protein family HMM PF08002 YP_002742783.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002742784.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002742785.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_002742786.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002742787.1 identified by match to protein family HMM PF00005 YP_002742788.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742789.1 identified by match to protein family HMM PF08796 YP_002742790.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002742792.1 identified by match to protein family HMM PF01710 YP_002742793.1 identified by glimmer; putative YP_002742794.1 identified by match to protein family HMM PF08860 YP_002742795.1 identified by match to protein family HMM PF00665 YP_002742796.1 identified by glimmer; putative YP_002742797.1 identified by match to protein family HMM PF05717 YP_002742798.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_002742799.1 negatively supercoils closed circular double-stranded DNA YP_002742800.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002742801.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002742802.1 identified by match to protein family HMM PF01098 YP_002742803.1 unwinds DNA YP_002742804.1 identified by match to protein family HMM PF01136 YP_002742806.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002742807.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002742808.1 identified by match to protein family HMM PF01433 YP_002742809.1 identified by match to protein family HMM PF06171 YP_002742810.1 identified by match to protein family HMM PF02896 YP_002742811.1 identified by match to protein family HMM PF00293 YP_002742812.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002742814.1 identified by match to protein family HMM PF00248 YP_002742816.1 identified by match to protein family HMM PF03551 YP_002742818.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002742819.1 identified by match to protein family HMM PF02687 YP_002742820.1 identified by match to protein family HMM PF00005 YP_002742821.1 identified by match to protein family HMM TIGR01730 YP_002742822.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_002742823.1 identified by match to protein family HMM PF02632 YP_002742827.1 identified by match to protein family HMM PF03477 YP_002742828.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002742829.1 Essential for efficient processing of 16S rRNA YP_002742830.1 identified by match to protein family HMM PF00561 YP_002742831.1 identified by match to protein family HMM PF01609 YP_002742832.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002742834.1 identified by match to protein family HMM PF00230 YP_002742835.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06458; match to protein family HMM TIGR01167 YP_002742836.1 identified by glimmer; putative YP_002742838.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742839.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742840.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742841.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002742842.1 identified by match to protein family HMM TIGR01295 YP_002742843.1 identified by match to protein family HMM PF00497 YP_002742844.1 identified by match to protein family HMM PF00005 YP_002742845.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002742846.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002742847.1 identified by match to protein family HMM PF01594 YP_002742849.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002742850.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002742851.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002742852.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002742853.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002742854.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002742855.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002742856.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002742857.1 identified by match to protein family HMM PF00583 YP_002742859.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002742860.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002742861.1 identified by match to protein family HMM PF00583 YP_002742862.1 identified by match to protein family HMM PF00583 YP_002742863.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002742865.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002742866.1 identified by match to protein family HMM PF00155 YP_002742867.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_002742868.1 identified by match to protein family HMM PF00496 YP_002742869.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002742870.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine YP_002742871.1 identified by match to protein family HMM PF05532 YP_002742872.1 identified by glimmer; putative YP_002742874.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002742875.1 identified by match to protein family HMM PF01541 YP_002742876.1 identified by match to protein family HMM PF05175 YP_002742877.1 identified by match to protein family HMM PF00575 YP_002742878.1 identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002742879.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002742880.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002742881.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002742882.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002742883.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002742884.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002742885.1 identified by match to protein family HMM PF03413 YP_002742886.1 identified by glimmer; putative YP_002742887.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002742888.1 identified by match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002742889.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002742890.1 identified by match to protein family HMM PF03883 YP_002742893.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002742894.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli YP_002742895.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002742896.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002742897.1 identified by match to protein family HMM PF00005 YP_002742898.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_002742899.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002742900.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002742901.1 identified by match to protein family HMM PF06619 YP_002742902.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002742903.1 identified by match to protein family HMM PF07949 YP_002742904.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002742905.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002742906.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002742907.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002742908.1 identified by match to protein family HMM PF03668 YP_002742909.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002742910.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002742911.1 binds and unfolds substrates as part of the ClpXP protease YP_002742913.1 identified by match to protein family HMM PF00186 YP_002742914.1 identified by match to protein family HMM PF00210 YP_002742915.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01473 YP_002742916.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002742917.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002742918.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002742919.1 identified by glimmer; putative YP_002742920.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002742921.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002742922.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002742923.1 identified by match to protein family HMM PF00857 YP_002742924.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002742925.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002742926.1 identified by match to protein family HMM PF07690 YP_002742927.1 Involved in disulfide oxidoreductase activity and electron transport YP_002742928.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002742929.1 identified by match to protein family HMM PF07685 YP_002742930.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002742932.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742933.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002742934.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002742935.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002742937.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002742938.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002742940.1 identified by match to protein family HMM PF07690 YP_002742941.1 identified by glimmer; putative YP_002742943.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002742944.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002742947.1 identified by match to protein family HMM PF00535 YP_002742948.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002742949.1 identified by match to protein family HMM PF01266 YP_002742950.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002742951.1 identified by match to protein family HMM PF04816 YP_002742952.1 identified by glimmer; putative YP_002742953.1 identified by glimmer; putative YP_002742954.1 identified by match to protein family HMM PF00665 YP_002742955.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002742956.1 identified by match to protein family HMM PF00834 YP_002742957.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR01427 YP_002742958.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_002742959.1 identified by match to protein family HMM PF00359 YP_002742960.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002742961.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002742962.1 identified by match to protein family HMM PF01553 YP_002742963.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779 YP_002742964.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002742967.1 identified by glimmer; putative YP_002742968.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002742969.1 identified by match to protein family HMM PF02518 YP_002742970.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002742973.1 identified by match to protein family HMM PF02082 YP_002742974.1 identified by match to protein family HMM PF00149 YP_002742975.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_002742977.1 identified by glimmer; putative YP_002742978.1 identified by glimmer; putative YP_002742979.1 identified by match to protein family HMM PF01609 YP_002742982.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002742983.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002742984.1 identified by match to protein family HMM PF00753 YP_002742985.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_002742986.1 identified by match to protein family HMM PF00005 YP_002742987.1 identified by match to protein family HMM PF00950 YP_002742988.1 identified by match to protein family HMM PF01297 YP_002742989.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002742990.1 identified by match to protein family HMM PF02687 YP_002742991.1 identified by match to protein family HMM PF00005 YP_002742993.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002742996.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002742998.1 identified by match to protein family HMM PF05103 YP_002742999.1 identified by match to protein family HMM PF01479 YP_002743000.1 identified by match to protein family HMM PF02325 YP_002743001.1 identified by match to protein family HMM PF04472 YP_002743002.1 identified by match to protein family HMM TIGR00044 YP_002743003.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002743004.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002743005.1 identified by match to protein family HMM TIGR02206 YP_002743006.1 identified by match to protein family HMM PF00293 YP_002743007.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002743008.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002743009.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002743010.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002743011.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002743012.1 identified by match to protein family HMM PF00480 YP_002743013.1 identified by match to protein family HMM PF00701 YP_002743015.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002743016.1 identified by match to protein family HMM PF00528 YP_002743017.1 identified by match to protein family HMM PF00528 YP_002743018.1 identified by match to protein family HMM PF01547 YP_002743019.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002743020.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002743021.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002743022.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973 YP_002743023.1 identified by match to protein family HMM PF00528 YP_002743024.1 identified by match to protein family HMM PF00528 YP_002743025.1 identified by match to protein family HMM PF01547 YP_002743026.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002743027.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973; match to protein family HMM TIGR01167 YP_002743029.1 identified by glimmer; putative YP_002743030.1 catalyzes branch migration in Holliday junction intermediates YP_002743031.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002743032.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002743033.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002743034.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002743035.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002743037.1 identified by match to protein family HMM PF00005 YP_002743040.1 identified by glimmer; putative YP_002743041.1 identified by glimmer; putative YP_002743042.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002743043.1 identified by match to protein family HMM PF00881 YP_002743044.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_002743045.1 identified by match to protein family HMM PF07261 YP_002743046.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002743047.1 identified by match to protein family HMM PF00392 YP_002743048.1 identified by match to protein family HMM PF00005 YP_002743051.1 identified by match to protein family HMM PF00005 YP_002743053.1 identified by match to protein family HMM PF09335 YP_002743054.1 identified by match to protein family HMM PF00480 YP_002743055.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996 YP_002743056.1 identified by glimmer; putative YP_002743057.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002743058.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002743059.1 identified by match to protein family HMM TIGR00532 YP_002743060.1 identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835 YP_002743062.1 identified by match to protein family HMM PF06738 YP_002743063.1 identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793 YP_002743064.1 identified by match to protein family HMM PF00481 YP_002743065.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002743066.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002743067.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002743068.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002743069.1 Essential for recycling GMP and indirectly, cGMP YP_002743070.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319 YP_002743072.1 identified by match to protein family HMM PF01609 YP_002743073.1 identified by match to protein family HMM PF05636 YP_002743074.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002743075.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002743076.1 identified by match to protein family HMM PF00857 YP_002743077.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_002743078.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002743079.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002743080.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_002743081.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002743082.1 identified by match to protein family HMM PF01544 YP_002743083.1 identified by match to protein family HMM PF00924 YP_002743084.1 identified by match to protein family HMM PF06081 YP_002743085.1 identified by match to protein family HMM PF01047 YP_002743087.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002743088.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002743089.1 identified by glimmer; putative YP_002743090.1 identified by match to protein family HMM PF00230 YP_002743091.1 identified by glimmer; putative YP_002743092.1 identified by glimmer; putative YP_002743093.1 identified by glimmer; putative YP_002743094.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002743095.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002743096.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002743098.1 identified by match to protein family HMM PF00004 YP_002743100.1 identified by match to protein family HMM PF02163 YP_002743102.1 identified by match to protein family HMM PF03681 YP_002743103.1 identified by match to protein family HMM PF07927 YP_002743106.1 identified by match to protein family HMM PF00004 YP_002743107.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_002743108.1 identified by match to protein family HMM PF01547 YP_002743110.1 identified by match to protein family HMM PF00528 YP_002743111.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002743112.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002743113.1 identified by match to protein family HMM PF04226 YP_002743116.1 identified by match to protein family HMM PF03780 YP_002743117.1 identified by match to protein family HMM PF05532 YP_002743118.1 identified by match to protein family HMM PF00583 YP_002743119.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002743120.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_002743122.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002743123.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002743124.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002743125.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002743126.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002743127.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002743128.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002743130.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002743131.1 identified by match to protein family HMM PF02308 YP_002743132.1 identified by match to protein family HMM PF00528 YP_002743133.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002743135.1 identified by match to protein family HMM PF08975 YP_002743136.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002743137.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002743138.1 identified by match to protein family HMM PF01895 YP_002743140.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_002743142.1 identified by match to protein family HMM PF01041 YP_002743143.1 identified by match to protein family HMM PF02397 YP_002743144.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002743145.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002743146.1 identified by glimmer; putative YP_002743147.1 identified by glimmer; putative YP_002743148.1 identified by glimmer; putative YP_002743149.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002743150.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002743151.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002743153.1 identified by match to protein family HMM PF06044 YP_002743154.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002743155.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002743156.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_002743157.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002743158.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002743159.1 identified by match to protein family HMM PF00376 YP_002743160.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002743161.1 identified by match to protein family HMM PF00440 YP_002743162.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002743163.1 identified by glimmer; putative YP_002743164.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002743165.1 identified by match to protein family HMM PF00005 YP_002743166.1 identified by match to protein family HMM PF07366 YP_002743167.1 identified by match to protein family HMM PF01047 YP_002743169.1 identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107 YP_002743171.1 identified by match to protein family HMM PF01032 YP_002743172.1 identified by match to protein family HMM PF01032 YP_002743173.1 identified by match to protein family HMM PF00005 YP_002743174.1 identified by match to protein family HMM PF01497 YP_002743175.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002743176.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002743177.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002743178.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002743179.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002743180.1 identified by match to protein family HMM PF00571 YP_002743181.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002743182.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002743183.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002743184.1 identified by match to protein family HMM PF03672 YP_002743185.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002743186.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992 YP_002743187.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002743188.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002743189.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002743190.1 identified by match to protein family HMM PF00528 YP_002743191.1 identified by match to protein family HMM PF00528 YP_002743192.1 identified by match to protein family HMM PF00496 YP_002743193.1 identified by match to protein family HMM PF04932 YP_002743194.1 identified by match to protein family HMM PF00128 YP_002743196.1 identified by match to protein family HMM PF00528 YP_002743197.1 identified by match to protein family HMM PF00528 YP_002743198.1 identified by match to protein family HMM PF01547 YP_002743199.1 identified by match to protein family HMM PF02065 YP_002743200.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002743201.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002743202.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002743203.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002743204.1 identified by match to protein family HMM PF04167 YP_002743206.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002743207.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002743208.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002743209.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002743210.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002743211.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002743212.1 identified by match to protein family HMM PF01588 YP_002743213.1 identified by match to protein family HMM PF00085 YP_002743215.1 identified by glimmer; putative YP_002743216.1 identified by match to protein family HMM PF01473 YP_002743218.1 identified by match to protein family HMM PF04397 YP_002743219.1 identified by match to protein family HMM PF01569 YP_002743221.1 identified by match to protein family HMM PF00005 YP_002743222.1 identified by match to protein family HMM PF00664 YP_002743223.1 identified by match to protein family HMM PF01047 YP_002743224.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002743225.1 identified by match to protein family HMM PF01289 YP_002743231.1 identified by glimmer; putative YP_002743233.1 identified by match to protein family HMM PF00005 YP_002743234.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002743235.1 identified by match to protein family HMM PF00356 YP_002743243.1 identified by glimmer; putative YP_002743245.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01510 YP_002743246.1 identified by glimmer; putative YP_002743247.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002743248.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002743249.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002743250.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002743251.1 identified by match to protein family HMM PF00583 YP_002743252.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002743254.1 identified by match to protein family HMM PF01381 YP_002743256.1 identified by glimmer; putative YP_002743257.1 identified by match to protein family HMM PF06125 YP_002743258.1 identified by match to protein family HMM PF06125 YP_002743259.1 identified by match to protein family HMM PF01580 YP_002743260.1 identified by match to protein family HMM PF01381; match to protein family HMM PF02486 YP_002743262.1 identified by match to protein family HMM PF07275 YP_002743266.1 identified by match to protein family HMM PF00877 YP_002743268.1 regulates the transcription of tet(M) by attenuation YP_002743269.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_002743273.1 identified by match to protein family HMM PF00005 YP_002743274.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00900 YP_002743276.1 identified by match to protein family HMM PF01381 YP_002743277.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281 YP_002743278.1 identified by match to protein family HMM PF09035 YP_002743279.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02920 YP_002743280.1 identified by glimmer; putative YP_002743281.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002743282.1 identified by match to protein family HMM PF00005 YP_002743284.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002743285.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002743286.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002743287.1 identified by glimmer; putative YP_002743288.1 identified by glimmer; putative YP_002743289.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002743290.1 identified by match to protein family HMM PF01223 YP_002743292.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002743295.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002743296.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002743297.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002743298.1 identified by glimmer; putative YP_002743299.1 identified by match to protein family HMM PF01027 YP_002743300.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002743301.1 catalyzes the hydrolysis of acylphosphate YP_002743302.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_002743303.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002743304.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_002743305.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002743306.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_002743307.1 identified by match to protein family HMM PF02646 YP_002743308.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_002743309.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_002743310.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002743311.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002743312.1 identified by glimmer; putative YP_002743313.1 identified by glimmer; putative YP_002743314.1 identified by match to protein family HMM PF00005 YP_002743315.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002743317.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002743318.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002743319.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002743320.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002743321.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002743322.1 identified by glimmer; putative YP_002743323.1 identified by match to protein family HMM PF00582 YP_002743324.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002743325.1 identified by match to protein family HMM PF00710 YP_002743326.1 identified by glimmer; putative YP_002743327.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_002743328.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002743329.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002743331.1 identified by match to protein family HMM PF00005 YP_002743334.1 identified by match to protein family HMM PF01609 YP_002743336.1 Modulates Rho-dependent transcription termination YP_002743337.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002743338.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_002743339.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002743340.1 identified by match to protein family HMM PF00849 YP_002743341.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002743342.1 identified by match to protein family HMM PF02687 YP_002743343.1 identified by glimmer; putative YP_002743345.1 identified by match to protein family HMM PF01710 YP_002743346.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002743347.1 identified by match to protein family HMM PF03600; match to protein family HMM PF07158 YP_002743349.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002743350.1 identified by match to protein family HMM PF00232 YP_002743351.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002743352.1 identified by match to protein family HMM PF02302 YP_002743353.1 identified by match to protein family HMM PF02255 YP_002743354.1 identified by match to protein family HMM PF00465 YP_002743355.1 identified by match to protein family HMM PF02493 YP_002743356.1 identified by match to protein family HMM PF01451 YP_002743357.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002743358.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002743360.1 identified by match to protein family HMM PF00874; match to protein family HMM PF08279 YP_002743361.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways YP_002743362.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_002743363.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_002743364.1 identified by match to protein family HMM PF00359 YP_002743365.1 identified by match to protein family HMM PF02302 YP_002743366.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002743368.1 identified by match to protein family HMM PF01424 YP_002743369.1 identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592 YP_002743370.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002743372.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002743374.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002743378.1 identified by match to protein family HMM TIGR02532 YP_002743379.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002743380.1 identified by match to protein family HMM PF00482 YP_002743381.1 identified by match to protein family HMM PF00437 YP_002743382.1 identified by match to protein family HMM PF06279 YP_002743383.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002743384.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002743385.1 identified by match to protein family HMM PF01757 YP_002743386.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002743387.1 identified by match to protein family HMM PF06161 YP_002743388.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002743389.1 identified by match to protein family HMM PF06993 YP_002743390.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_002743391.1 identified by match to protein family HMM PF01476 YP_002743392.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002743393.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR00797 YP_002743394.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002743397.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002743398.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002743400.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002743401.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002743403.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002743404.1 This protein performs the mismatch recognition step during the DNA repair process YP_002743405.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_002743406.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002743407.1 identified by match to protein family HMM PF01609 YP_002743408.1 identified by match to protein family HMM PF06172 YP_002743409.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002743410.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002743412.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002743413.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002743414.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002743415.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002743417.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002743418.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002743419.1 identified by match to protein family HMM PF01694 YP_002743420.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002743421.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002743422.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_002743423.1 identified by match to protein family HMM PF00892 YP_002743424.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_002743425.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002743426.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_002743428.1 identified by match to protein family HMM PF08241 YP_002743429.1 identified by glimmer; putative YP_002743430.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002743431.1 amylomaltase; acts to release glucose from maltodextrins YP_002743432.1 identified by match to protein family HMM PF01547 YP_002743433.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154 YP_002743434.1 identified by match to protein family HMM PF00528 YP_002743436.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002743437.1 identified by match to protein family HMM PF02588 YP_002743438.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002743441.1 identified by match to protein family HMM PF02517 YP_002743444.1 identified by match to protein family HMM PF01381 YP_002743446.1 identified by glimmer; putative YP_002743448.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002743449.1 identified by match to protein family HMM PF07690 YP_002743450.1 identified by match to protein family HMM TIGR01716 YP_002743452.1 identified by match to protein family HMM PF01883 YP_002743453.1 identified by glimmer; putative YP_002743454.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002743455.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002743456.1 identified by match to protein family HMM PF00456 YP_002743457.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002743458.1 identified by match to protein family HMM PF02302 YP_002743459.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_002743460.1 identified by match to protein family HMM PF01145 YP_002743462.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002743463.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002743464.1 identified by match to protein family HMM PF01473 YP_002743465.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002743466.1 identified by match to protein family HMM PF01609 YP_002743468.1 identified by match to protein family HMM PF00728 YP_002743469.1 identified by match to protein family HMM PF00480 YP_002743470.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_002743471.1 identified by match to protein family HMM PF06824 YP_002743472.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_002743473.1 identified by match to protein family HMM PF00754 YP_002743474.1 catalyzes the degradation of arginine to citruline and ammonia YP_002743475.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_002743476.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002743477.1 identified by match to protein family HMM PF03606 YP_002743478.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_002743479.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002743480.1 identified by glimmer; putative YP_002743481.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_002743482.1 identified by glimmer; putative YP_002743483.1 identified by match to protein family HMM PF01145 YP_002743484.1 identified by match to protein family HMM PF00465 YP_002743485.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_002743486.1 identified by match to protein family HMM PF00754; match to protein family HMM PF08307 YP_002743488.1 identified by match to protein family HMM PF03613 YP_002743489.1 identified by match to protein family HMM PF03609 YP_002743490.1 identified by match to protein family HMM PF03830 YP_002743491.1 identified by match to protein family HMM PF03610 YP_002743492.1 identified by match to protein family HMM PF05025 YP_002743493.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate YP_002743494.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002743495.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002743496.1 identified by match to protein family HMM PF01297; match to protein family HMM PF09223 YP_002743497.1 identified by match to protein family HMM PF00950 YP_002743498.1 identified by match to protein family HMM PF00005 YP_002743499.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF01978; match to protein family HMM PF08279 YP_002743501.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_002743502.1 identified by match to protein family HMM PF03062 YP_002743503.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_002743505.1 identified by match to protein family HMM PF07690 YP_002743507.1 identified by glimmer; putative YP_002743508.1 identified by glimmer; putative YP_002743509.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002743510.1 identified by match to protein family HMM PF01266 YP_002743511.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002743512.1 identified by match to protein family HMM PF05043 YP_002743513.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002743514.1 identified by match to protein family HMM PF00724; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002743515.1 identified by match to protein family HMM PF01473 YP_002743516.1 identified by match to protein family HMM PF04140 YP_002743517.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002743518.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002743520.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002743521.1 identified by match to protein family HMM PF05848 YP_002743522.1 identified by match to protein family HMM PF00005 YP_002743523.1 identified by match to protein family HMM PF09084 YP_002743524.1 identified by match to protein family HMM PF00528 YP_002743526.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08460 YP_002743527.1 identified by match to protein family HMM PF06257 YP_002743528.1 unwinds double stranded DNA YP_002743529.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002743530.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002743531.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002743533.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002743534.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002743535.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002743536.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002743538.1 identified by match to protein family HMM PF05717 YP_002743539.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002743540.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002743541.1 identified by match to protein family HMM PF05257 YP_002743542.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002743543.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002743544.1 identified by match to protein family HMM PF02361 YP_002743545.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002743546.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002743547.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002743549.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002743550.1 identified by match to protein family HMM PF05193 YP_002743551.1 identified by match to protein family HMM TIGR02988 YP_002743552.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002743553.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002743554.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002743555.1 identified by match to protein family HMM PF00005 YP_002743557.1 identified by glimmer; putative YP_002743558.1 identified by glimmer; putative YP_002743559.1 identified by match to protein family HMM PF00440 YP_002743560.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002743561.1 identified by match to protein family HMM PF02518 YP_002743562.1 identified by match to protein family HMM PF03047 YP_002743563.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002743564.1 identified by match to protein family HMM PF00089 YP_002743565.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180