-- dump date   	20140620_085319
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
7685595	transposase; this region contains one or more premature stops and/or frameshifts
7686456	transposase; this region contains one or more premature stops and/or frameshifts
7685322	glycosyltransferases involved in cell wall biogenesis, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00535
7685676	transposase; this region contains one or more premature stops and/or frameshifts
7686863	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7687367	glycosyl transferase, group 1 family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7686979	UDP-glucose 6-dehydrogenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03721
7686969	ABC transporter membrane-spanning permease - iron transport, degenerate; this region contains one or more premature stops and/or frameshifts
7686177	iron ABC transporter, iron-binding protein, degenerate; this region contains one or more premature stops and/or frameshifts
7685529	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF06042
7685663	transposase of family; this region contains one or more premature stops and/or frameshifts
7687149	UDP-galactopyranose mutase, degenerate; this region contains one or more premature stops and/or frameshifts
7686432	DNA alkylation repair enzyme; this region contains one or more premature stops and/or frameshifts
7686728	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
7685276	transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF02371
7687041	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
7686380	transport/processing ATP-binding protein ComA, internal deletion; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03412
7686896	transposase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01609
7685465	BlpZ; this region contains one or more premature stops and/or frameshifts
7687333	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
7685337	transposase; this region contains one or more premature stops and/or frameshifts
7686651	transposase; this region contains one or more premature stops and/or frameshifts
7685928	acetyltransferase, gnat family; this region contains one or more premature stops and/or frameshifts
7686795	conserved domain protein; this region contains one or more premature stops and/or frameshifts
7686184	radical SAM superfamily enzyme, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF04055
7687321	ABC-type amino acid transport/signal transduction system, periplasmic component/domain, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7685236	glutamate/aspartate transport ATP-binding protein GltL, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00005
7687164	Spn1 transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01609
7687267	regulator of the multidrug efflux pump PmrA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07739; match to protein family HMM PF09278
7685366	MutT/nudix family protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00293
7686185	DEAD RNA helicase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00270; match to protein family HMM PF00271
7686888	enzyme of poly-gamma-glutamate biosynthesis, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
7686687	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
7685859	transposase; this region contains one or more premature stops and/or frameshifts
7687344	restriction endonuclease R.XbaI, degenerate; this region contains one or more premature stops and/or frameshifts
7686684	homoserine dehydrogenase (HDH), unverified frameshift; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00742; match to protein family HMM PF03447
7686805	2-isopropylmalate synthase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00682; match to protein family HMM PF08502
7686759	O-acetylhomoserine (thiol)-lyase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM TIGR01326
7685345	transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01610
7687125	transposase; this region contains one or more premature stops and/or frameshifts
7687258	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7686299	Spn1 transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01609
7686282	site-specific recombinase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00239; match to protein family HMM PF07508
7686435	neopullulanase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00128; match to protein family HMM PF02903
7685306	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
7687108	transposase; this region contains one or more premature stops and/or frameshifts
7686558	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7686238	transposase; this region contains one or more premature stops and/or frameshifts
7685257	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
7687139	phosphoserine phosphatase (PSP) (O-phosphoserinephosphohydrolase) (PSPase); this region contains one or more premature stops and/or frameshifts
7685467	transposase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF01610
7685503	transposase; this region contains one or more premature stops and/or frameshifts
7686231	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7686647	transposase; this region contains one or more premature stops and/or frameshifts
7685701	transposase OrfB, authentic point muation; this gene contains a premature stop which is not the result of sequencing error
7685635	alanine dehydrogenase, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
7685971	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7686993	transposase; this region contains one or more premature stops and/or frameshifts
7686417	transposase; this region contains one or more premature stops and/or frameshifts
7686306	transposase family protein; this region contains one or more premature stops and/or frameshifts
7686362	transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7686436	multidrug resistance ABC transporter ATP-binding and permease protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00005
7686689	chlorohydrolase; this region contains one or more premature stops and/or frameshifts
7686988	PTS system, IIB component; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF02379; match to protein family HMM TIGR00829
7685297	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
7686019	protein of unknown function; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF04854
7686095	xylan esterase 1, unverified frameshift; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05448
7685664	transposase, degenerate; this region contains one or more premature stops and/or frameshifts
7686496	inner membrane symporter YgjU, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7687102	putative otitis media-associated P41, authentic point muation; this gene contains a premature stop which is not the result of sequencing error
7685668	glyoxalase family protein superfamily, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
7685239	UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose4-epimerase); this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
7686347	transposase; this region contains one or more premature stops and/or frameshifts
7685385	transcriptional regulator; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01381
7686764	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF02677
7687277	binding-protein-dependent transport systems inner membrane component, unverified frameshift; an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
7687370	ImpB/MucB/SamB family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
7686991	transcriptional regulator, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01381
7687339	transposase; this region contains one or more premature stops and/or frameshifts
7685781	DltD protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
7685558	GBSi1, group II intron, maturase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00078; match to protein family HMM PF08388
7685268	surface protein PspC, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05062; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
7686973	transposase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01610
7685938	transposase; this region contains one or more premature stops and/or frameshifts