-- dump date 20250217_003852 -- class Genbank::Contig -- table contig_comment -- id comment NC_018002.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003333.1.REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, MarshREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marshREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NVREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marshREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sedimentREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30CREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11 Pseudo Genes (incomplete) :: 6 of 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11 Pseudo Genes (incomplete) :: 6 of 11 Pseudo Genes (internal stop) :: 0 of 11REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11 Pseudo Genes (incomplete) :: 6 of 11 Pseudo Genes (internal stop) :: 0 of 11 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11 Pseudo Genes (incomplete) :: 6 of 11 Pseudo Genes (internal stop) :: 0 of 11 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003333.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085841 Source DNA and organism available from Terry Hazen TCHazen@lbl.gov) Contacts: Terry Hazen TCHazen@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sulfurospirillum barnesii SES-3 collection_date :: Missing lat_lon :: 39.61970 -118.94594 depth :: Missing alt_elev :: Missing country :: Missing environment :: Fresh water, Marsh num_replicons :: 1 ref_biomaterial :: SES-3, ATCC 700032, DSM 10660 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 10425777 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi03958 Type Strain :: Yes Funding Program :: DOE-GTL 2007 Gene Calling Method :: GeneMark Isolation Site :: Selenate-contaminated freshwater marsh sediment, Massie Slough, NV Source of Isolate :: Selenate-contaminated freshwater marsh sediment Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile Temperature Optimum :: 30C Gram Staining :: Gram- Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000265295.1-RS_2024_04_30 Annotation Date :: 04/30/2024 00:29:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,560 CDSs (total) :: 2,509 Genes (coding) :: 2,498 CDSs (with protein) :: 2,498 Genes (RNA) :: 51 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 3 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 5 of 11 Pseudo Genes (incomplete) :: 6 of 11 Pseudo Genes (internal stop) :: 0 of 11 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.