-- dump date 20250217_004053 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP007028.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP007028.1.REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGIREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGIREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality DraftREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot springREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring inREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of OctopusREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park,REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, WyomingREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: HyperthermophileREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: UnknownREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: UnknownREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12 Pseudo Genes (internal stop) :: 2 of 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12 Pseudo Genes (internal stop) :: 2 of 12 Pseudo Genes (multiple problems) :: 1 of 12REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12 Pseudo Genes (internal stop) :: 2 of 12 Pseudo Genes (multiple problems) :: 1 of 12 CRISPR Arrays :: 6REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12 Pseudo Genes (internal stop) :: 2 of 12 Pseudo Genes (multiple problems) :: 1 of 12 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007028.1. URL -- http://www.jgi.doe.gov JGI Project ID: 97955 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan Eisen (jaeisen@ucdavis.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI Annotation by JGI The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thermocrinis ruber DSM 23557 lat_lon :: 44.543 -110.798 country :: USA ref_biomaterial :: DSM 23557 biotic_relationship :: Free living rel_to_oxygen :: Anaerobe assembly :: ALLPATHS v. R37654 finishing_strategy :: Level 2: High-Quality Draft environment :: Aquatic; Hot spring trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi12110 Current Finishing Status :: Level 6: Finished Type Strain :: Yes Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: pink filamentous streamers occurring in the upper outflow channel of Octopus Spring in Yellowstone National Park, Wyoming Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Hyperthermophile Temperature Optimum :: 80 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: ALLPATHS v. R37654 Genome Coverage :: Unknown Sequencing Technology :: Unknown ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000512735.1-RS_2024_05_02 Annotation Date :: 05/02/2024 02:06:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,675 CDSs (total) :: 1,625 Genes (coding) :: 1,613 CDSs (with protein) :: 1,613 Genes (RNA) :: 50 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 3 Pseudo Genes (total) :: 12 CDSs (without protein) :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted) :: 4 of 12 Pseudo Genes (incomplete) :: 7 of 12 Pseudo Genes (internal stop) :: 2 of 12 Pseudo Genes (multiple problems) :: 1 of 12 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## COMPLETENESS: full length.