-- dump date 20250217_004129 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP007029.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP007029.1.REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard MuyzerREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNLREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: AlkalophileREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91 Pseudo Genes (internal stop) :: 15 of 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91 Pseudo Genes (internal stop) :: 15 of 91 Pseudo Genes (multiple problems) :: 11 of 91REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91 Pseudo Genes (internal stop) :: 15 of 91 Pseudo Genes (multiple problems) :: 11 of 91 CRISPR Arrays :: 8REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91 Pseudo Genes (internal stop) :: 15 of 91 Pseudo Genes (multiple problems) :: 11 of 91 CRISPR Arrays :: 8 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP007029.1. URL -- http://www.jgi.doe.gov JGI Project ID: 401912 Source DNA and Organism available from Gerard Muyzer (g.muijzer@uva.nl) Source DNA available from Gerard Muyzer (g.muijzer@uva.nl) Organism available from Gerard Muyzer (g.muijzer@uva.nl) Contacts: Gerard Muyzer (g.muijzer@uva.nl) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Thioalkalivibrio paradoxus ARh 1 biotic_relationship :: Free living rel_to_oxygen :: Facultative assembly :: Newbler v. 2.3 trophic_level :: Chemolithoautotroph sequencing_meth :: WGS GOLD Stamp ID :: Gi07686 Current Finishing Status :: Level 6: Finished Funding Program :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Salinity :: Halophile Gram Staining :: Gram- Sequencing Depth :: 30x Diseases :: None Phenotypes :: Alkalophile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454; Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000227685.2-RS_2024_12_13 Annotation Date :: 12/13/2024 13:04:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,549 CDSs (total) :: 3,496 Genes (coding) :: 3,405 CDSs (with protein) :: 3,405 Genes (RNA) :: 53 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 5 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 35 of 91 Pseudo Genes (incomplete) :: 53 of 91 Pseudo Genes (internal stop) :: 15 of 91 Pseudo Genes (multiple problems) :: 11 of 91 CRISPR Arrays :: 8 ##Genome-Annotation-Data-END## COMPLETENESS: full length.