-- dump date   	20240506_004920
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_015581.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002776.1.REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike KapplerREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USAREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: ChemolithoautotrophREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake MonoREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et alREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: AlkaliphileREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2 Pseudo Genes (frameshifted)       :: 0 of 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2 Pseudo Genes (frameshifted)       :: 0 of 2 Pseudo Genes (incomplete)         :: 1 of 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2 Pseudo Genes (frameshifted)       :: 0 of 2 Pseudo Genes (incomplete)         :: 1 of 2 Pseudo Genes (internal stop)      :: 1 of 2REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2 Pseudo Genes (frameshifted)       :: 0 of 2 Pseudo Genes (incomplete)         :: 1 of 2 Pseudo Genes (internal stop)      :: 1 of 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002776.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089833 Source DNA and organism available from Ulrike Kappler (u.kappler@uq.edu.au) Contacts: Ulrike Kappler (u.kappler@uq.edu.au)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Thioalkalimicrobium cyclicum ALM1 collection_date     :: 2002 lat_lon             :: 38.012 -118.976 depth               :: Missing alt_elev            :: Missing country             :: USA environment         :: Missing num_replicons       :: 1 ref_biomaterial     :: DSM 14477, JCM 11371 biotic_relationship :: Missing trophic_level       :: Chemolithoautotroph rel_to_oxygen       :: Facultative isol_growth_condt   :: 12054257 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi05326 Type Strain         :: Yes Funding Program     :: DOE-CSP 2010 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site      :: Water; USA, California, Lake Mono Isolation Comments  :: isolated by Sorokin et al Cell Shape          :: Open-ring-shaped Motility            :: Nonmotile Phenotypes          :: Alkaliphile ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 12/24/2023 11:01:01 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.6 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 1,723 CDSs (total)                      :: 1,673 Genes (coding)                    :: 1,671 CDSs (with protein)               :: 1,671 Genes (RNA)                       :: 50 rRNAs                             :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 3 Pseudo Genes (total)              :: 2 CDSs (without protein)            :: 2 Pseudo Genes (ambiguous residues) :: 0 of 2 Pseudo Genes (frameshifted)       :: 0 of 2 Pseudo Genes (incomplete)         :: 1 of 2 Pseudo Genes (internal stop)      :: 1 of 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.