-- dump date 20240506_075314 -- class Genbank::Contig -- table contig_comment -- id comment NZ_OX366326.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to OX366326.1.REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBioREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree ofREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assemblyREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBioREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing usingREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned withREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger.REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77 Pseudo Genes (incomplete) :: 54 of 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77 Pseudo Genes (incomplete) :: 54 of 77 Pseudo Genes (internal stop) :: 7 of 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77 Pseudo Genes (incomplete) :: 54 of 77 Pseudo Genes (internal stop) :: 7 of 77 Pseudo Genes (multiple problems) :: 19 of 77REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77 Pseudo Genes (incomplete) :: 54 of 77 Pseudo Genes (internal stop) :: 7 of 77 Pseudo Genes (multiple problems) :: 19 of 77 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to OX366326.1. The assembly iyAndHaem1.Wolbachia_sp_1.1 is based on 194x PacBio data and 10X Genomics Chromium data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm followed by polishing using FreeBayes-called variants from 10X short reads aligned with LongRanger. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/24/2023 04:09:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,497 CDSs (total) :: 1,456 Genes (coding) :: 1,379 CDSs (with protein) :: 1,379 Genes (RNA) :: 41 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 34 ncRNAs :: 4 Pseudo Genes (total) :: 77 CDSs (without protein) :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted) :: 39 of 77 Pseudo Genes (incomplete) :: 54 of 77 Pseudo Genes (internal stop) :: 7 of 77 Pseudo Genes (multiple problems) :: 19 of 77 ##Genome-Annotation-Data-END## COMPLETENESS: full length.