Network Analysis Tools - Help about draw-heatmap

This manual page is provisionary. It is a simple copy / paste of the manual of the command line tool.

NAME
    draw-heatmap

VERSION
    $program_version

DESCRIPTION
    Draw a heatmap from a table

AUTHORS
    Sylvain Brohee 

    With the help of Morgane Thomas-Chollier  for
    Chaos representation

CATEGORY
    util

USAGE
    draw-heatmap [-i inputfile] -o outputfile [-v #] [-chaos] [...]
    -out_format [png|jpeg]

INPUT FORMAT
    A tab delimited table.

    It may contain a header (starting with a '#' symbol). The cells nlt
    containing real values will not be taken into account.

OUTPUT FORMAT
    A heatmap in the specified format.

OPTIONS
    -v #
        Level of verbosity (detail in the warning messages during execution)

    -h
        Display full help message

    -help
        Same as -h

    -i inputfile
        Input file name. This option is mandatory.

    -o outputfile
        Name of the output file. This option is mandatory.

    -html html_map_file
        If a HTML map file is defined, draw-heatmap then produces a HTML
        file that loads the HEATMAP. Moreover, each of the cell is defined
        so that when the mouse is over in a web browser, the user get the
        name of row, of the column and the value of the cell. For CHAOS game
        representation, the word corresponding to the cell and its
        associated value are given.

    -rownames
        Use this option if the first column contain the row names.

    -no_text
        Using this option, the values are not written in the cells of the
        heatmap.

    -out_format output_format
        Output format. Supported: png,jpeg

    -gradient
        Color of the intensity gradient of the heatmap. Default is grey.
        Supported : green, blue, red, fire, grey.

    -col_width #
        Width of the columns (in pixel).

        If the row height is to small, the label of the heatmap will not be
        indicated. (Default : 50 px)

    -row_height #
        Height of the rows (in pixel).

        If the row height is to small, the label of the heatmap will not be
        indicated. (Default : 30 px)

    -min #
        Minimal value of the heatmap. By default, this value is the minimal
        value of the input file. If the specified value is larger than the
        minimal value of the heatmap, then the minimal value of the heatmap
        will be used as minimal value.

    -max #
        Maximal value of the heatmap. By default, this value is the maximal
        value of the input file. If the specified value is smaller than the
        maximal value of the heatmap, then the maximal value of the heatmap
        will be used as maximal value.

    -lines
        Add black vertical and horizontal separations lines between the
        cells of the heatmap