; This file describes the collections of curated position-specific ; scoring matrices (PSSM) used by the tools compare-matrices and ; peak-motifs, in order to compare discovered motifs with those bound ; by known transcription factors. ; ; Column description ; 1 DB_NAME Database name ; 2 FORMAT Matrix format (see convert-matrices for supported formats) ; 3 FILE Matrix file (path relative to the motif DB directory ${RSAT}/data/motif_databases/) ; 4 DESCR Human-readable description of the database (source, data type, ...) ; 5 VERSION Version (date) of the import ; 6 URL URL from the file from which matrices were obtained ; 7 LABEL label to group in the web matrix selector ; 8 DATABASE source database #COLLECTION FORMAT FILE DESCR VERSION URL CATEGORY DATABASE ; ;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Fungi motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;; Yeastract tf Yeastract/yeastract_20150629.tf Yeastract s_cerevisiae 20130918 http://www.yeastract.com/ Fungi Yeastract ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Insect motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; DrosophilaTFs tf DrosophilaTFs/DrosophilaTFs_2015-11-06.tf DrosophilaTFs 2015-11 http://bergmanlab.genetics.uga.edu/?page_id=274 Non-vertebrate Metazoa DrosophilaTFs FlyFactorSurvey tf FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf Database of Drosophila DNA-binding specificities (FlyFactorSurvey) 2016_06 http://mccb.umassmed.edu/ffs/ Non-vertebrate Metazoa FlyFactorSurvey DMMPMM_drosophila tf DMMPMM_drosophila/dmmpmm_PCM.tf Drosophila DMMPMM 2010_11 http://autosome.ru/DMMPMM/ Non-vertebrate Metazoa DMMPMM_drosophila IDMMPMM_drosophila tf DMMPMM_drosophila/idmmpmm_PCM.tf Drosophila IDMMPMM 2010_11 http://autosome.ru/iDMMPMM/ Non-vertebrate Metazoa DMMPMM_drosophila ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Ascidian motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; Aniseed tf Aniseed/Ciona_robusta_SELEX_motifs.tf Aniseed (Ciona robusta motifs detected by SELEX) 2020-08 https://www.aniseed.cnrs.fr/aniseed/download/download_data Non-vertebrate Metazoa Aniseed ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Plants motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;; ArabidopsisPBM tf ArabidopsisPBM/ArabidopsisPBM_2015-11-06.tf ArabidopsisPBM (A thaliana) 2015-11 http://www.pnas.org/content/111/6/2367.abstract Plants ArabidopsisPBM Athamap tf Athamap/Athamap_2015-11-06.tf Athamap (A thaliana) 2015-11 http://www.athamap.de/ Plants Athamap cistrome tf Cistrome/Cistrome_Athaliana.tf Cistrome (A thaliana motifs detected by DAP-seq) 2016-06 http://neomorph.salk.edu/dev/pages/shhuang/dap_web/pages/index.php Plants cistrome ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Prokaryotes motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; DBTBS tf DBTBS/DBTBS_2015-11-06.tf DBTBS (Bacillus Subtilis) 2015-11 http://dbtbs.hgc.jp/ Prokaryotes DBTBS regulonDB tf REGULONDB/regulonDB_2015-08-07.tf RegulonDB prokaryotes 2015_08 http://regulondb.ccg.unam.mx/ Prokaryotes regulonDB ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Vertebrates motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ENCODE tf ENCODE/encode-motifs_Kheradpour_Kellis_NAR2013.tf ENCODE (Human TFs) 2018-03 https://www.ncbi.nlm.nih.gov/pubmed/24335146 Vertebrates ENCODE epigram tf Epigram/epigram_motifs.tf Epigram (Human Histone marks related motifs) 2016-06 http://wanglab.ucsd.edu/star/epigram/ Vertebrates epigram Hocomoco_human tf HOCOMOCO/HOCOMOCO_2017-10-17_Human.tf Hocomoco (Human TFs) 2017-10 http://hocomoco11.autosome.ru/ Vertebrates Hocomoco Hocomoco_mouse tf HOCOMOCO/HOCOMOCO_2017-10-17_Mouse.tf Hocomoco (Mouse TFs) 2017-10 http://hocomoco11.autosome.ru/ Vertebrates Hocomoco Homer tf Homer/Homer_motifs.tf Homer (Human TF motifs) 2016-07 http://homer.salk.edu/homer/motif/motifDatabase.html Vertebrates Homer hPDI tf hPDI/hPDI_matrices.tf hPDI (Human TFs identified by protein microarray assays) 2016-06 http://bioinfo.wilmer.jhu.edu/PDI/ Vertebrates hPDI HT_Methyl_Selex tf HT_Selex/Methyl_SELEX_human_TFs.tf HT-Methyl-Selex (Human TFs) 2018-03 http://science.sciencemag.org/content/356/6337/eaaj2239.long Vertebrates HT_Selex HT_Selex tf HT_Selex/SELEX_human_TFs.tf HT-Selex (Human TFs) 2018-03 http://science.sciencemag.org/content/356/6337/eaaj2239.long Vertebrates HT_Selex Jolma_2013 tf Jolma_2013/Jolma_2013_2015-11-06.tf Jolma_2013 (Human TFs) 2015-11 http://www.cell.com/abstract/S0092-8674%2812%2901496-1 Vertebrates Jolma Jolma_2015 tf Jolma_2015/Jolma_TF_dimers_2015.tf Human_TF_dimers (Human TFs dimers) 2016-05 http://www.nature.com/nature/journal/v527/n7578/full/nature15518.html Vertebrates Jolma NCAP-SELEX tf NCAP-SELEX/NCAP_SELEX_motifs.tf NCAP-SELEX (HUMAN TFs) 2018-09 https://doi.org/10.1038/s41586-018-0549-5 Vertebrates CAP-SELEX CAP-SELEX tf NCAP-SELEX/CAP_SELEX_motifs.tf CAP-SELEX (HUMAN TFs) 2018-09 https://doi.org/10.1038/s41586-018-0549-5 Vertebrates CAP-SELEX ZF_ChIP-exo tf Zinc_fingers_Dogan2020/Zinc_fingers_ChIP-exo.tf ZF_ChIP-exo (C2H2 zinc fingers) 2020-07 https://www.biorxiv.org/content/10.1101/630756v4 Vertebrates ZF_ChIP-exo ZF_ChIP-seq tf Zinc_fingers_Dogan2020/Zinc_fingers_ChIP-seq.tf ZF_ChIP-seq (C2H2 zinc fingers) 2020-07 https://www.biorxiv.org/content/10.1101/630756v4 Vertebrates ZF_ChIP-seq ; ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; MethMotif databases - Separated by cell types ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; ; MethMotif_A549 tf MethMotif_cell_types/A549_MethMotif.tf Methylated motifs A549 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_GM12878 tf MethMotif_cell_types/GM12878_MethMotif.tf Methylated motifs GM12878 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_H1-hESC tf MethMotif_cell_types/H1-hESC_MethMotif.tf Methylated motifs H1-hESC (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_HCT116 tf MethMotif_cell_types/HCT116_MethMotif.tf Methylated motifs HCT116 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_HEK293 tf MethMotif_cell_types/HEK293_MethMotif.tf Methylated motifs HEK293 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_HEK293T tf MethMotif_cell_types/HEK293T_MethMotif.tf Methylated motifs HEK293T (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_HeLa-S3 tf MethMotif_cell_types/HeLa-S3_MethMotif.tf Methylated motifs HeLa-S3 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_HepG2 tf MethMotif_cell_types/HepG2_MethMotif.tf Methylated motifs HepG2 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_IMR-90 tf MethMotif_cell_types/IMR-90_MethMotif.tf Methylated motifs IMR-90 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_K562 tf MethMotif_cell_types/K562_MethMotif.tf Methylated motifs K562 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_MCF-7 tf MethMotif_cell_types/MCF-7_MethMotif.tf Methylated motifs MCF-7 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_SK-N-SH tf MethMotif_cell_types/SK-N-SH_MethMotif.tf Methylated motifs SK-N-SH (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif MethMotif_SNU398 tf MethMotif_cell_types/SNU398_MethMotif.tf Methylated motifs SNU398 (Human TFs) 2018-11 https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gky1005/5150233 Vertebrates MethMotif ; ; ;;;;;;;;;;;; ;; Cis-BP ;; ;;;;;;;;;;;; cisBP_human tf cisBP/cisBP_Homo_sapiens_2014-10.tf cisBP human 2014-10_v0.9 http://cisbp.ccbr.utoronto.ca/ Vertebrates cisBP cisBP_mouse tf cisBP/cisBP_Mus_musculus_2014-10.tf cisBP mouse 2014-10_v0.9 http://cisbp.ccbr.utoronto.ca/ Vertebrates cisBP cisBP_drosophila tf cisBP/cisBP_Drosophila_melanogaster_2014-10.tf cisBP drosophila 2014-10_v0.9 http://cisbp.ccbr.utoronto.ca/ Non-vertebrate Metazoa cisBP cisBP_C.elegans tf cisBP/cisBP_Caenorhabditis_elegans_2015-05.tf cisBP c_elegans 2015-05_v1.02 http://cisbp.ccbr.utoronto.ca/ Non-vertebrate Metazoa cisBP cisBP_S.cerevisiae tf cisBP/cisBP_Saccharomyces_cerevisiae_2015-06.tf cisBP s_cerevisiae 2015-06_v1.02 http://cisbp.ccbr.utoronto.ca/ Fungi cisBP cisBP_A_thaliana tf cisBP/CisBp_A_thaliana.tf cisBP a_thaliana 2015-06_v1.02 http://cisbp.ccbr.utoronto.ca/ Plants cisBP ; ;;;;;;;;;;;;;;;;; ;; FootprintDB ;; ;;;;;;;;;;;;;;;;; footprintDB-plants tf footprintDB/footprintDB.plants.motif.tf footprintDB-plants [only plant DNA motifs] 2020-01 http://floresta.eead.csic.es/footprintdb Plants footprintDB footprintDB-metazoa tf footprintDB/footprintDB.metazoa.motif.tf footprintDB-metazoa [only metazoa DNA motifs] 2020-01 http://floresta.eead.csic.es/footprintdb Non-vertebrate Metazoa footprintDB footprintDB tf footprintDB/footprintDB.motif.tf footprintDB all 2020-01 http://floresta.eead.csic.es/footprintdb Multi-organisms footprintDB ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Jaspar core non-redundant (one PSSM for each TF);; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; jaspar_core_nonredundant_all tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_non-redundant_pfms.tf JASPAR core nonredundant all 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_non-redundant_pfms_transfac.txt Multi-organisms Jaspar jaspar_core_nonredundant_fungi tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_fungi_non-redundant_pfms.tf JASPAR core nonredundant fungi 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_fungi_non-redundant_pfms_transfac.txt Fungi Jaspar jaspar_core_nonredundant_insects tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_insects_non-redundant_pfms.tf JASPAR core nonredundant insects 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_insects_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_nonredundant_nematodes tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_nematodes_non-redundant_pfms.tf JASPAR core nonredundant nematodes 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_nematodes_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_nonredundant_plants tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_plants_non-redundant_pfms.tf JASPAR core nonredundant plants 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_plants_non-redundant_pfms_transfac.txt Plants Jaspar jaspar_core_nonredundant_urochordates tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_urochordates_non-redundant_pfms.tf JASPAR core nonredundant urochordates 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_urochordates_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_nonredundant_vertebrates tf JASPAR/Jaspar_2020/nonredundant/JASPAR2020_CORE_vertebrates_non-redundant_pfms.tf JASPAR core nonredundant vertebrates 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_vertebrates_non-redundant_pfms_transfac.txt Vertebrates Jaspar ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Jaspar core redundant (redundant means several PSSMs (all PSSM versions across the releases) for the same TF) ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; jaspar_core_redundant_all tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_redundant_pfms.tf JASPAR core redundant all 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_redundant_pfms_transfac.txt Multi-organisms Jaspar jaspar_core_redundant_fungi tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_fungi_redundant_pfms.tf JASPAR core redundant fungi 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_fungi_redundant_pfms_transfac.txt Fungi Jaspar jaspar_core_redundant_insects tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_insects_redundant_pfms.tf JASPAR core redundant insects 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_insects_redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_redundant_nematodes tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_nematodes_redundant_pfms.tf JASPAR core redundant nematodes 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_nematodes_redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_redundant_plants tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_plants_redundant_pfms.tf JASPAR core redundant plants 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_plants_redundant_pfms_transfac.txt Plants Jaspar jaspar_core_redundant_urochordates tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_urochordates_redundant_pfms.tf JASPAR core redundant urochordates 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_urochordates_redundant_pfms_transfac.txt Non-vertebrate Metazoa Jaspar jaspar_core_redundant_vertebrates tf JASPAR/Jaspar_2020/redundant/JASPAR2020_CORE_vertebrates_redundant_pfms.tf JASPAR core redundant vertebrates 2020 http://jaspar2020.genereg.net/download/CORE/JASPAR2020_CORE_vertebrates_redundant_pfms_transfac.txt Vertebrates Jaspar ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; Jaspar Unvalidated (High-quality motifs without orthogonal supporting evidence) ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ; jaspar_unvalidated tf JASPAR/Jaspar_2020/unvalidated/JASPAR2020_UNVALIDATED_pfms.tf JASPAR unvalidated 2020 http://jaspar2020.genereg.net/download/collections/JASPAR2020_UNVALIDATED_pfms_transfac.txt Multi-organisms Jaspar ; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; RSAT non-redundant motif collections ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; RSAT_nonredundant_vertebrates tf RSAT_nonredundant_vertebrates_2017.tf RSAT non-redundant vertebrates 2017 http://pedagogix-tagc.univ-mrs.fr/rsat/data/published_data/Castro_2016_matrix-clustering/ Vertebrates RSAT RSAT_nonredundant_plants tf RSAT_nonredundant_plants_2017.tf RSAT non-redundant plants 2017 http://pedagogix-tagc.univ-mrs.fr/rsat/data/published_data/Castro_2016_matrix-clustering/ Plants RSAT RSAT_nonredundant_insects tf RSAT_nonredundant_insects_2017.tf RSAT non-redundant insects 2017 http://pedagogix-tagc.univ-mrs.fr/rsat/data/published_data/Castro_2016_matrix-clustering/ Non-vertebrate Metazoa RSAT RSAT_nonredundant_insects_plants_vertebrates tf RSAT_nonredundant_insects_plants_vertebrates_2017.tf RSAT non-redundant insects+plants+vertebrates 2017 http://pedagogix-tagc.univ-mrs.fr/rsat/data/published_data/Castro_2016_matrix-clustering/ Multi-organisms RSAT ; ;;;;;;;;;;;;;;;;;;;;;;;;;;; ;; RNA motif databases (from Mathieu Bahin) ;; ;;;;;;;;;;;;;;;;;;;;;;;;;;; ATtRACT tf ATtRACT/ATtRACT_2017_12.tf ATtRACT 2017 https://attract.cnic.es/download RNA binding ATtRACT RBPDB tf RBPDB/RBPDB_2017_12.tf RBPDB 2017 http://rbpdb.ccbr.utoronto.ca/downloads/PFMDir.zip RNA binding RBPDB CISBP-RNA tf CISBP-RNA/CISBP-RNA_2017_12.tf CISBP-RNA 2017 http://cisbp-rna.ccbr.utoronto.ca/ RNA binding cisBP ; ;;;;;;;;;;;;;;;;; ;; Cis-BP 2.00 ;; ;;;;;;;;;;;;;;;;; cisBP_Acyrthosiphon_pisum tf cisBP2/cisBP_Acyrthosiphon_pisum_2019.tf cisBP Acyrthosiphon_pisum 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Aedes_aegypti tf cisBP2/cisBP_Aedes_aegypti_2019.tf cisBP Aedes_aegypti 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Ailuropoda_melanoleuca tf cisBP2/cisBP_Ailuropoda_melanoleuca_2019.tf cisBP Ailuropoda_melanoleuca 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Amphimedon_queenslandica tf cisBP2/cisBP_Amphimedon_queenslandica_2019.tf cisBP Amphimedon_queenslandica 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Anas_platyrhynchos tf cisBP2/cisBP_Anas_platyrhynchos_2019.tf cisBP Anas_platyrhynchos 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Anopheles_darlingi tf cisBP2/cisBP_Anopheles_darlingi_2019.tf cisBP Anopheles_darlingi 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Anopheles_gambiae tf cisBP2/cisBP_Anopheles_gambiae_2019.tf cisBP Anopheles_gambiae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Apis_mellifera tf cisBP2/cisBP_Apis_mellifera_2019.tf cisBP Apis_mellifera 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Arabidopsis_thaliana tf cisBP2/cisBP_Arabidopsis_thaliana_2019.tf cisBP Arabidopsis_thaliana 2019-09_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Astyanax_mexicanus tf cisBP2/cisBP_Astyanax_mexicanus_2019.tf cisBP Astyanax_mexicanus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Atta_cephalotes tf cisBP2/cisBP_Atta_cephalotes_2019.tf cisBP Atta_cephalotes 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Bombyx_mori tf cisBP2/cisBP_Bombyx_mori_2019.tf cisBP Bombyx_mori 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Bos_taurus tf cisBP2/cisBP_Bos_taurus_2019.tf cisBP Bos_taurus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Brugia_malayi tf cisBP2/cisBP_Brugia_malayi_2019.tf cisBP Brugia_malayi 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Caenorhabditis_brenneri tf cisBP2/cisBP_Caenorhabditis_brenneri_2019.tf cisBP Caenorhabditis_brenneri 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Caenorhabditis_briggsae tf cisBP2/cisBP_Caenorhabditis_briggsae_2019.tf cisBP Caenorhabditis_briggsae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Caenorhabditis_elegans tf cisBP2/cisBP_Caenorhabditis_elegans_2019.tf cisBP Caenorhabditis_elegans 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Caenorhabditis_japonica tf cisBP2/cisBP_Caenorhabditis_japonica_2019.tf cisBP Caenorhabditis_japonica 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Caenorhabditis_remanei tf cisBP2/cisBP_Caenorhabditis_remanei_2019.tf cisBP Caenorhabditis_remanei 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Callithrix_jacchus tf cisBP2/cisBP_Callithrix_jacchus_2019.tf cisBP Callithrix_jacchus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Cavia_porcellus tf cisBP2/cisBP_Cavia_porcellus_2019.tf cisBP Cavia_porcellus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Chlorocebus_sabaeus tf cisBP2/cisBP_Chlorocebus_sabaeus_2019.tf cisBP Chlorocebus_sabaeus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Choloepus_hoffmanni tf cisBP2/cisBP_Choloepus_hoffmanni_2019.tf cisBP Choloepus_hoffmanni 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Ciona_intestinalis tf cisBP2/cisBP_Ciona_intestinalis_2019.tf cisBP Ciona_intestinalis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Crassostrea_gigas tf cisBP2/cisBP_Crassostrea_gigas_2019.tf cisBP Crassostrea_gigas 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Culex_quinquefasciatus tf cisBP2/cisBP_Culex_quinquefasciatus_2019.tf cisBP Culex_quinquefasciatus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Danaus_plexippus tf cisBP2/cisBP_Danaus_plexippus_2019.tf cisBP Danaus_plexippus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Danio_rerio tf cisBP2/cisBP_Danio_rerio_2019.tf cisBP Danio_rerio 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Daphnia_pulex tf cisBP2/cisBP_Daphnia_pulex_2019.tf cisBP Daphnia_pulex 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Dasypus_novemcinctus tf cisBP2/cisBP_Dasypus_novemcinctus_2019.tf cisBP Dasypus_novemcinctus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Dendroctonus_ponderosae tf cisBP2/cisBP_Dendroctonus_ponderosae_2019.tf cisBP Dendroctonus_ponderosae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Dipodomys_ordii tf cisBP2/cisBP_Dipodomys_ordii_2019.tf cisBP Dipodomys_ordii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Drosophila_ananassae tf cisBP2/cisBP_Drosophila_ananassae_2019.tf cisBP Drosophila_ananassae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_erecta tf cisBP2/cisBP_Drosophila_erecta_2019.tf cisBP Drosophila_erecta 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_grimshawi tf cisBP2/cisBP_Drosophila_grimshawi_2019.tf cisBP Drosophila_grimshawi 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_melanogaster tf cisBP2/cisBP_Drosophila_melanogaster_2019.tf cisBP Drosophila_melanogaster 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_mojavensis tf cisBP2/cisBP_Drosophila_mojavensis_2019.tf cisBP Drosophila_mojavensis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_persimilis tf cisBP2/cisBP_Drosophila_persimilis_2019.tf cisBP Drosophila_persimilis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_pseudoobscura tf cisBP2/cisBP_Drosophila_pseudoobscura_2019.tf cisBP Drosophila_pseudoobscura 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_sechellia tf cisBP2/cisBP_Drosophila_sechellia_2019.tf cisBP Drosophila_sechellia 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_simulans tf cisBP2/cisBP_Drosophila_simulans_2019.tf cisBP Drosophila_simulans 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_virilis tf cisBP2/cisBP_Drosophila_virilis_2019.tf cisBP Drosophila_virilis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_willistoni tf cisBP2/cisBP_Drosophila_willistoni_2019.tf cisBP Drosophila_willistoni 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Drosophila_yakuba tf cisBP2/cisBP_Drosophila_yakuba_2019.tf cisBP Drosophila_yakuba 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Echinops_telfairi tf cisBP2/cisBP_Echinops_telfairi_2019.tf cisBP Echinops_telfairi 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Equus_caballus tf cisBP2/cisBP_Equus_caballus_2019.tf cisBP Equus_caballus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Erinaceus_europaeus tf cisBP2/cisBP_Erinaceus_europaeus_2019.tf cisBP Erinaceus_europaeus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Gallus_gallus tf cisBP2/cisBP_Gallus_gallus_2019.tf cisBP Gallus_gallus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Heliconius_melpomene tf cisBP2/cisBP_Heliconius_melpomene_2019.tf cisBP Heliconius_melpomene 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Helobdella_robusta tf cisBP2/cisBP_Helobdella_robusta_2019.tf cisBP Helobdella_robusta 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Homo_sapiens tf cisBP2/cisBP_Homo_sapiens_2019.tf cisBP Homo_sapiens 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Ixodes_scapularis tf cisBP2/cisBP_Ixodes_scapularis_2019.tf cisBP Ixodes_scapularis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Loa_loa tf cisBP2/cisBP_Loa_loa_2019.tf cisBP Loa_loa 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Lottia_gigantea tf cisBP2/cisBP_Lottia_gigantea_2019.tf cisBP Lottia_gigantea 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Lucilia_cuprina tf cisBP2/cisBP_Lucilia_cuprina_2019.tf cisBP Lucilia_cuprina 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Megaselia_scalaris tf cisBP2/cisBP_Megaselia_scalaris_2019.tf cisBP Megaselia_scalaris 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Melitaea_cinxia tf cisBP2/cisBP_Melitaea_cinxia_2019.tf cisBP Melitaea_cinxia 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Mus_musculus tf cisBP2/cisBP_Mus_musculus_2019.tf cisBP Mus_musculus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Nasonia_vitripennis tf cisBP2/cisBP_Nasonia_vitripennis_2019.tf cisBP Nasonia_vitripennis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Nematostella_vectensis tf cisBP2/cisBP_Nematostella_vectensis_2019.tf cisBP Nematostella_vectensis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Octopus_bimaculoides tf cisBP2/cisBP_Octopus_bimaculoides_2019.tf cisBP Octopus_bimaculoides 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Onchocerca_volvulus tf cisBP2/cisBP_Onchocerca_volvulus_2019.tf cisBP Onchocerca_volvulus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Oreochromis_niloticus tf cisBP2/cisBP_Oreochromis_niloticus_2019.tf cisBP Oreochromis_niloticus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Pediculus_humanus tf cisBP2/cisBP_Pediculus_humanus_2019.tf cisBP Pediculus_humanus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Pristionchus_pacificus tf cisBP2/cisBP_Pristionchus_pacificus_2019.tf cisBP Pristionchus_pacificus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Rattus_norvegicus tf cisBP2/cisBP_Rattus_norvegicus_2019.tf cisBP Rattus_norvegicus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Rhodnius_prolixus tf cisBP2/cisBP_Rhodnius_prolixus_2019.tf cisBP Rhodnius_prolixus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Saccharomyces_cerevisiae tf cisBP2/cisBP_Saccharomyces_cerevisiae_2019.tf cisBP Saccharomyces_cerevisiae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Fungi cisBP cisBP_Schistosoma_mansoni tf cisBP2/cisBP_Schistosoma_mansoni_2019.tf cisBP Schistosoma_mansoni 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Solenopsis_invicta tf cisBP2/cisBP_Solenopsis_invicta_2019.tf cisBP Solenopsis_invicta 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Strigamia_maritima tf cisBP2/cisBP_Strigamia_maritima_2019.tf cisBP Strigamia_maritima 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Strongylocentrotus_purpuratus tf cisBP2/cisBP_Strongylocentrotus_purpuratus_2019.tf cisBP Strongylocentrotus_purpuratus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Tetranychus_urticae tf cisBP2/cisBP_Tetranychus_urticae_2019.tf cisBP Tetranychus_urticae 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Tribolium_castaneum tf cisBP2/cisBP_Tribolium_castaneum_2019.tf cisBP Tribolium_castaneum 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Trichinella_spiralis tf cisBP2/cisBP_Trichinella_spiralis_2019.tf cisBP Trichinella_spiralis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Trichoplax_adhaerens tf cisBP2/cisBP_Trichoplax_adhaerens_2019.tf cisBP Trichoplax_adhaerens 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Xenopus_tropicalis tf cisBP2/cisBP_Xenopus_tropicalis_2019.tf cisBP Xenopus_tropicalis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Vertebrates cisBP cisBP_Zootermopsis_nevadensis tf cisBP2/cisBP_Zootermopsis_nevadensis_2019.tf cisBP Zootermopsis_nevadensis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Non-vertebrate Metazoa cisBP cisBP_Aegilops_tauschii tf cisBP2/cisBP_Aegilops_tauschii_2019.tf cisBP Aegilops_tauschii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Amborella_trichopoda tf cisBP2/cisBP_Amborella_trichopoda_2019.tf cisBP Amborella_trichopoda 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Arabidopsis_lyrata tf cisBP2/cisBP_Arabidopsis_lyrata_2019.tf cisBP Arabidopsis_lyrata 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Brachypodium_distachyon tf cisBP2/cisBP_Brachypodium_distachyon_2019.tf cisBP Brachypodium_distachyon 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Brassica_napus tf cisBP2/cisBP_Brassica_napus_2019.tf cisBP Brassica_napus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Brassica_oleracea tf cisBP2/cisBP_Brassica_oleracea_2019.tf cisBP Brassica_oleracea 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Brassica_rapa tf cisBP2/cisBP_Brassica_rapa_2019.tf cisBP Brassica_rapa 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Chlamydomonas_reinhardtii tf cisBP2/cisBP_Chlamydomonas_reinhardtii_2019.tf cisBP Chlamydomonas_reinhardtii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Cucumis_sativus tf cisBP2/cisBP_Cucumis_sativus_2019.tf cisBP Cucumis_sativus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Fragaria_vesca tf cisBP2/cisBP_Fragaria_vesca_2019.tf cisBP Fragaria_vesca 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Glycine_max tf cisBP2/cisBP_Glycine_max_2019.tf cisBP Glycine_max 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Gossypium_raimondii tf cisBP2/cisBP_Gossypium_raimondii_2019.tf cisBP Gossypium_raimondii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Helianthus_annuus tf cisBP2/cisBP_Helianthus_annuus_2019.tf cisBP Helianthus_annuus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Hordeum_vulgare tf cisBP2/cisBP_Hordeum_vulgare_2019.tf cisBP Hordeum_vulgare 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Leersia_perrieri tf cisBP2/cisBP_Leersia_perrieri_2019.tf cisBP Leersia_perrieri 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Manihot_esculenta tf cisBP2/cisBP_Manihot_esculenta_2019.tf cisBP Manihot_esculenta 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Medicago_truncatula tf cisBP2/cisBP_Medicago_truncatula_2019.tf cisBP Medicago_truncatula 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Musa_acuminata tf cisBP2/cisBP_Musa_acuminata_2019.tf cisBP Musa_acuminata 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_barthii tf cisBP2/cisBP_Oryza_barthii_2019.tf cisBP Oryza_barthii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_brachyantha tf cisBP2/cisBP_Oryza_brachyantha_2019.tf cisBP Oryza_brachyantha 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_glaberrima tf cisBP2/cisBP_Oryza_glaberrima_2019.tf cisBP Oryza_glaberrima 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_glumaepatula tf cisBP2/cisBP_Oryza_glumaepatula_2019.tf cisBP Oryza_glumaepatula 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_indica tf cisBP2/cisBP_Oryza_indica_2019.tf cisBP Oryza_indica 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_longistaminata tf cisBP2/cisBP_Oryza_longistaminata_2019.tf cisBP Oryza_longistaminata 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_meridionalis tf cisBP2/cisBP_Oryza_meridionalis_2019.tf cisBP Oryza_meridionalis 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_nivara tf cisBP2/cisBP_Oryza_nivara_2019.tf cisBP Oryza_nivara 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_punctata tf cisBP2/cisBP_Oryza_punctata_2019.tf cisBP Oryza_punctata 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_rufipogon tf cisBP2/cisBP_Oryza_rufipogon_2019.tf cisBP Oryza_rufipogon 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Oryza_sativa tf cisBP2/cisBP_Oryza_sativa_2019.tf cisBP Oryza_sativa 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Ostreococcus_lucimarinus tf cisBP2/cisBP_Ostreococcus_lucimarinus_2019.tf cisBP Ostreococcus_lucimarinus 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Phaseolus_vulgaris tf cisBP2/cisBP_Phaseolus_vulgaris_2019.tf cisBP Phaseolus_vulgaris 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Physcomitrella_patens tf cisBP2/cisBP_Physcomitrella_patens_2019.tf cisBP Physcomitrella_patens 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Populus_trichocarpa tf cisBP2/cisBP_Populus_trichocarpa_2019.tf cisBP Populus_trichocarpa 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Prunus_mume tf cisBP2/cisBP_Prunus_mume_2019.tf cisBP Prunus_mume 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Prunus_persica tf cisBP2/cisBP_Prunus_persica_2019.tf cisBP Prunus_persica 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Selaginella_moellendorffii tf cisBP2/cisBP_Selaginella_moellendorffii_2019.tf cisBP Selaginella_moellendorffii 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Setaria_italica tf cisBP2/cisBP_Setaria_italica_2019.tf cisBP Setaria_italica 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Solanum_lycopersicum tf cisBP2/cisBP_Solanum_lycopersicum_2019.tf cisBP Solanum_lycopersicum 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Solanum_tuberosum tf cisBP2/cisBP_Solanum_tuberosum_2019.tf cisBP Solanum_tuberosum 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Sorghum_bicolor tf cisBP2/cisBP_Sorghum_bicolor_2019.tf cisBP Sorghum_bicolor 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Triticum_aestivum tf cisBP2/cisBP_Triticum_aestivum_2019.tf cisBP Triticum_aestivum 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Triticum_urartu tf cisBP2/cisBP_Triticum_urartu_2019.tf cisBP Triticum_urartu 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Vitis_vinifera tf cisBP2/cisBP_Vitis_vinifera_2019.tf cisBP Vitis_vinifera 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP cisBP_Zea_mays tf cisBP2/cisBP_Zea_mays_2019.tf cisBP Zea_mays 2019-06_v2.00 http://cisbp.ccbr.utoronto.ca/bulk.php Plants cisBP ; ;;;;;;;;;;;;;;;;;;;;;;;;; ;; Old motif databases ;; ;;;;;;;;;;;;;;;;;;;;;;;;; ;regulonDB" tf REGULONDB/regulonDB_2012-05.tf RegulonDB prokaryotes 2012_05 http://regulondb.ccg.unam.mx/ ;FlyFactorSurvey" tf FlyFactorSurvey/PWM_FlyFactorSurvey.tf Drosophila Database of Drosophila TD DNA-binding specificities 2011_06 http://pgfe.umassmed.edu/ffs/ ;Uniprobe_worm" tf uniprobe/uniprobe_worm_Cell09.tf Uniprobe worm from Groves (Cell09) 2009 http://thebrain.bwh.harvard.edu/uniprobe/downloads/Cell09/worm_pwm_all.zip ;cisBP ;cisBP_human" tf cisBP/cisBP_Homo_sapiens_2013-12.tf cisBP human 2013-12_v0.9 http://cisbp.ccbr.utoronto.ca/ ;cisBP_mouse" tf cisBP/cisBP_Mus_musculus_2013-12.tf cisBP mouse 2013-12_v0.9 http://cisbp.ccbr.utoronto.ca/ ;Hocomoco_human" tf HOCOMOCO/HOCOMOCO_2015-08-07.tf Hocomoco (Human TFs) 2015-08 http://autosome.ru/HOCOMOCO/ ;Hocomoco_human" tf HOCOMOCO/HOCOMOCO_2015-11-23_Human.tf Hocomoco (Human TFs) 2015-11 http://www.cbrc.kaust.edu.sa/hocomoco10/ ;Hocomoco_mouse" tf HOCOMOCO/HOCOMOCO_2015-11-23_Mouse.tf Hocomoco (Mouse TFs) 2015-11 http://www.cbrc.kaust.edu.sa/hocomoco10/ ;Smile_Seq_Fly" tf Smile-seq/Smile_seq_fly_motifs.tf Smile-seq (Drosohpila TF dimers) 2018_04 https://www.nature.com/articles/nmeth.4143 ;Smile_Seq_Human" tf Smile-seq/Smile_seq_human_motifs.tf Smile-seq (Human TF dimers) 2018_04 https://www.nature.com/articles/nmeth.4143 ;Smile_Seq_Mouse" tf Smile-seq/Smile_seq_mouse_motifs.tf Smile-seq (Mouse TF dimers) 2018_04 https://www.nature.com/articles/nmeth.4143 ; JASPAR redundant and nonredundant ! ; JASPAR IMPORT 2016-03-01 ;jaspar_core_redundant_all" tf JASPAR/Jaspar_2016/jaspar_core_redundant_all_2016.tf JASPAR core redundant all 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_all.txt ;jaspar_core_nonredundant_all" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_all_2016.tf JASPAR core nonredundant all 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all.txt ;jaspar_core_redundant_fungi" tf JASPAR/Jaspar_2016/jaspar_core_redundant_fungi_2016.tf JASPAR core redundant fungi 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_fungi.txt ;jaspar_core_nonredundant_fungi" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_fungi_2016.tf JASPAR core nonredundant fungi 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_fungi.txt ;jaspar_core_redundant_insects" tf JASPAR/Jaspar_2016/jaspar_core_redundant_insects_2016.tf JASPAR core redundant insects 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_insects.txt ;jaspar_core_nonredundant_insects" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_insects_2016.tf JASPAR core nonredundant insects 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_insects.txt ;jaspar_core_redundant_nematodes" tf JASPAR/Jaspar_2016/jaspar_core_redundant_nematodes_2016.tf JASPAR core redundant nematodes 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_nematodes.txt ;jaspar_core_nonredundant_nematodes" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_nematodes_2016.tf JASPAR core nonredundant nematodes 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_nematodes.txt ;jaspar_core_redundant_plants" tf JASPAR/Jaspar_2016/jaspar_core_redundant_plants_2016.tf JASPAR core redundant plants 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_plants.txt ;jaspar_core_nonredundant_plants" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_plants_2016.tf JASPAR core nonredundant plants 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_plants.txt ;jaspar_core_redundant_urochordates" tf JASPAR/Jaspar_2016/jaspar_core_redundant_urochordates_2016.tf JASPAR core redundant urochordates 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_urochordates.txt ;jaspar_core_nonredundant_urochordates" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_urochordates_2016.tf JASPAR core nonredundant urochordates 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_urochordates.txt ;jaspar_core_redundant_vertebrates" tf JASPAR/Jaspar_2016/jaspar_core_redundant_vertebrates_2016.tf JASPAR core redundant vertebrates 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/redundant/pfm_vertebrates.txt ;jaspar_core_nonredundant_vertebrates" tf JASPAR/Jaspar_2016/jaspar_core_nonredundant_vertebrates_2016.tf JASPAR core nonredundant vertebrates 2016 http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_vertebrates.txt ;jaspar_core_nonredundant_all" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_all_non-redundant_pfms_transfac.tf JASPAR core nonredundant all 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_non-redundant_pfms_transfac.txt Multi-organisms ;jaspar_core_nonredundant_fungi" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_fungi_non-redundant_pfms_transfac.tf JASPAR core nonredundant fungi 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_fungi_non-redundant_pfms_transfac.txt Fungi ;jaspar_core_nonredundant_insects" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_insects_non-redundant_pfms_transfac.tf JASPAR core nonredundant insects 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_insects_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_nonredundant_nematodes" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_nematodes_non-redundant_pfms_transfac.tf JASPAR core nonredundant nematodes 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_nematodes_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_nonredundant_plants" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_plants_non-redundant_pfms_transfac.tf JASPAR core nonredundant plants 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_plants_non-redundant_pfms_transfac.txt Plants ;jaspar_core_nonredundant_urochordates" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_urochordates_non-redundant_pfms_transfac.tf JASPAR core nonredundant urochordates 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_urochordates_non-redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_nonredundant_vertebrates" tf JASPAR/Jaspar_2018/nonredundant/JASPAR2018_CORE_vertebrates_non-redundant_pfms_transfac.tf JASPAR core nonredundant vertebrates 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_vertebrates_non-redundant_pfms_transfac.txt Vertebrates ;jaspar_core_redundant_all" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_all_redundant_pfms_transfac.tf JASPAR core redundant all 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_redundant_pfms_transfac.txt Multi-organisms ;jaspar_core_redundant_fungi" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_fungi_redundant_pfms_transfac.tf JASPAR core redundant fungi 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_fungi_redundant_pfms_transfac.txt Fungi ;jaspar_core_redundant_insects" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_insects_redundant_pfms_transfac.tf JASPAR core redundant insects 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_insects_redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_redundant_nematodes" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_nematodes_redundant_pfms_transfac.tf JASPAR core redundant nematodes 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_nematodes_redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_redundant_plants" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_plants_redundant_pfms_transfac.tf JASPAR core redundant plants 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_plants_redundant_pfms_transfac.txt Plants ;jaspar_core_redundant_urochordates" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_urochordates_redundant_pfms_transfac.tf JASPAR core redundant urochordates 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_urochordates_redundant_pfms_transfac.txt Non-vertebrate Metazoa ;jaspar_core_redundant_vertebrates" tf JASPAR/Jaspar_2018/redundant/JASPAR2018_CORE_vertebrates_redundant_pfms_transfac.tf JASPAR core redundant vertebrates 2018 http://jaspar2018.genereg.net/download/CORE/JASPAR2018_CORE_vertebrates_redundant_pfms_transfac.txt Vertebrates ;