AC AtMYB0_I/AtMYB0_I/AthaMYB XX ID AtMYB0_I:AtMYB0_I:AthaMYB XX NA AtMYB0_I XX DE AtMYB0_I XX OS Arabidopsis thaliana XX BF 10295; BF 10301; BF 10321; BF 10327; BF 10336; BF 10352; BF 10358; BF 10360; BF 10361; BF 10377; BF 10390; BF 10394; BF 10395; BF 10401; BF 10407; XX P0 A C G T 01 3 0 1 1 a 02 2 1 0 2 w 03 2 2 0 1 m 04 4 0 0 1 A 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 3 0 2 0 r XX BS 35087; BS 35088; BS 35092; BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB0_I:AtMYB0_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB0_II/AtMYB0_II/AthaMYB XX ID AtMYB0_II:AtMYB0_II:AthaMYB XX NA AtMYB0_II XX DE AtMYB0_II XX OS Arabidopsis thaliana XX BF 10295; XX P0 A C G T 01 1 0 2 0 r 02 0 0 1 2 k 03 0 0 0 3 T 04 3 0 0 0 A 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35090; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB0_II:AtMYB0_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB100_I/AtMYB100_I/AthaMYB XX ID AtMYB100_I:AtMYB100_I:AthaMYB XX NA AtMYB100_I XX DE AtMYB100_I XX OS Arabidopsis thaliana XX BF 10298; BF 10304; BF 10307; BF 10315; BF 10328; BF 10296; BF 10333; BF 10335; BF 10340; BF 10353; BF 10363; BF 10372; BF 10376; BF 10379; BF 10381; BF 10384; BF 10388; BF 10389; BF 10397; BF 10400; XX P0 A C G T 01 2 0 1 2 w 02 2 1 1 1 a 03 2 3 0 0 m 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 3 0 2 0 r XX BS 35087; BS 35088; BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB100_I:AtMYB100_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB100_II/AtMYB100_II/AthaMYB XX ID AtMYB100_II:AtMYB100_II:AthaMYB XX NA AtMYB100_II XX DE AtMYB100_II XX OS Arabidopsis thaliana XX BF 10298; BF 10303; BF 10307; BF 10314; XX P0 A C G T 01 0 0 1 0 G 02 0 0 0 1 T 03 0 0 0 1 T 04 1 0 0 0 A 05 0 0 1 0 G 06 0 0 0 1 T 07 0 0 0 1 T 08 1 0 0 0 A XX BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB100_II:AtMYB100_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB101_I/AtMYB101_I/AthaMYB XX ID AtMYB101_I:AtMYB101_I:AthaMYB XX NA AtMYB101_I XX DE AtMYB101_I XX OS Arabidopsis thaliana XX BF 10299; BF 10310; BF 10314; XX P0 A C G T 01 0 0 1 1 k 02 1 0 0 1 w 03 0 2 0 0 C 04 1 0 0 1 w 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB101_I:AtMYB101_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB101_II/AtMYB101_II/AthaMYB XX ID AtMYB101_II:AtMYB101_II:AthaMYB XX NA AtMYB101_II XX DE AtMYB101_II XX OS Arabidopsis thaliana XX BF 10299; BF 10375; BF 10409; XX P0 A C G T 01 0 0 2 0 G 02 0 0 0 2 T 03 0 0 0 2 T 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB101_II:AtMYB101_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB102_I/AtMYB102_I/AthaMYB XX ID AtMYB102_I:AtMYB102_I:AthaMYB XX NA AtMYB102_I XX DE AtMYB102_I XX OS Arabidopsis thaliana XX BF 10300; BF 10305; BF 10311; BF 10312; BF 10313; BF 10317; BF 10308; BF 10320; BF 10322; BF 10323; BF 10332; BF 10341; BF 10342; BF 10345; BF 10347; BF 10349; BF 10350; BF 10351; BF 10356; BF 10357; BF 10362; BF 10364; BF 10365; BF 10366; BF 10368; BF 10359; BF 10371; BF 10378; BF 10385; BF 10386; BF 10393; BF 10398; BF 10403; BF 10404; BF 10410; BF 10402; XX P0 A C G T 01 3 0 1 2 w 02 2 1 1 2 w 03 2 3 0 1 m 04 4 0 1 1 a 05 0 0 6 0 G 06 0 0 0 6 T 07 0 0 0 6 T 08 3 0 3 0 r XX BS 35087; BS 35088; BS 35092; BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB102_I:AtMYB102_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB102_II/AtMYB102_II/AthaMYB XX ID AtMYB102_II:AtMYB102_II:AthaMYB XX NA AtMYB102_II XX DE AtMYB102_II XX OS Arabidopsis thaliana XX BF 10300; BF 10403; XX P0 A C G T 01 1 0 1 0 r 02 0 1 1 0 s 03 0 0 0 2 T 04 0 0 1 1 k 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35091; BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB102_II:AtMYB102_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB103_II/AtMYB103_II/AthaMYB XX ID AtMYB103_II:AtMYB103_II:AthaMYB XX NA AtMYB103_II XX DE AtMYB103_II XX OS Arabidopsis thaliana XX BF 10301; XX P0 A C G T 01 2 0 6 0 R 02 0 1 5 2 k 03 0 0 0 8 T 04 5 0 1 2 w 05 0 0 8 0 G 06 0 0 2 6 K 07 0 0 0 8 T 08 4 0 4 0 r XX BS 35090; BS 35091; BS 35094; BS 35095; BS 35096; BS 19337; BS 35098; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB103_II:AtMYB103_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB104_I/AtMYB104_I/AthaMYB XX ID AtMYB104_I:AtMYB104_I:AthaMYB XX NA AtMYB104_I XX DE AtMYB104_I XX OS Arabidopsis thaliana XX BF 10302; BF 10374; XX P0 A C G T 01 0 0 0 1 T 02 1 0 0 0 A 03 0 1 0 0 C 04 0 0 0 1 T 05 0 0 1 0 G 06 0 0 0 1 T 07 0 0 0 1 T 08 0 0 1 0 G XX BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB104_I:AtMYB104_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB105_I/AtMYB105_I/AthaMYB XX ID AtMYB105_I:AtMYB105_I:AthaMYB XX NA AtMYB105_I XX DE AtMYB105_I XX OS Arabidopsis thaliana XX BF 10303; BF 10331; XX P0 A C G T 01 3 0 0 1 W 02 2 1 0 1 h 03 2 1 0 1 h 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35087; BS 35088; BS 35092; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB105_I:AtMYB105_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB106_II/AtMYB106_II/AthaMYB XX ID AtMYB106_II:AtMYB106_II:AthaMYB XX NA AtMYB106_II XX DE AtMYB106_II XX OS Arabidopsis thaliana XX BF 10304; BF 10341; BF 10342; BF 10346; BF 10338; BF 10386; BF 10380; XX P0 A C G T 01 0 0 1 0 G 02 0 1 0 0 C 03 0 0 0 1 T 04 0 0 0 1 T 05 0 0 1 0 G 06 0 0 0 1 T 07 0 0 0 1 T 08 0 0 1 0 G XX BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB106_II:AtMYB106_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB107_II/AtMYB107_II/AthaMYB XX ID AtMYB107_II:AtMYB107_II:AthaMYB XX NA AtMYB107_II XX DE AtMYB107_II XX OS Arabidopsis thaliana XX BF 10305; XX P0 A C G T 01 1 0 2 0 r 02 0 1 1 1 b 03 0 0 0 3 T 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35091; BS 35094; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB107_II:AtMYB107_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB108_I/AtMYB108_I/AthaMYB XX ID AtMYB108_I:AtMYB108_I:AthaMYB XX NA AtMYB108_I XX DE AtMYB108_I XX OS Arabidopsis thaliana XX BF 10306; XX P0 A C G T 01 2 0 0 2 w 02 2 1 1 0 v 03 2 2 0 0 m 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35087; BS 35088; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB108_I:AtMYB108_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB108_II/AtMYB108_II/AthaMYB XX ID AtMYB108_II:AtMYB108_II:AthaMYB XX NA AtMYB108_II XX DE AtMYB108_II XX OS Arabidopsis thaliana XX BF 10306; BF 10372; XX P0 A C G T 01 0 0 2 0 G 02 0 0 0 2 T 03 1 0 0 1 w 04 1 0 1 0 r 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35089; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB108_II:AtMYB108_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB10_I/AtMYB10_I/AthaMYB XX ID AtMYB10_I:AtMYB10_I:AthaMYB XX NA AtMYB10_I XX DE AtMYB10_I XX OS Arabidopsis thaliana XX BF 10297; XX P0 A C G T 01 2 0 0 1 w 02 2 0 0 1 w 03 1 1 0 1 h 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35087; BS 35092; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB10_I:AtMYB10_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB10_II/AtMYB10_II/AthaMYB XX ID AtMYB10_II:AtMYB10_II:AthaMYB XX NA AtMYB10_II XX DE AtMYB10_II XX OS Arabidopsis thaliana XX BF 10297; XX P0 A C G T 01 2 0 5 0 R 02 0 1 5 1 G 03 1 0 0 6 T 04 3 0 2 2 d 05 0 0 7 0 G 06 0 0 2 5 K 07 0 0 0 7 T 08 3 0 4 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35095; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB10_II:AtMYB10_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB110_I/AtMYB110_I/AthaMYB XX ID AtMYB110_I:AtMYB110_I:AthaMYB XX NA AtMYB110_I XX DE AtMYB110_I XX OS Arabidopsis thaliana XX BF 10309; BF 10319; BF 10334; BF 10344; BF 10338; BF 10354; BF 10369; BF 10382; XX P0 A C G T 01 2 0 1 1 d 02 2 1 0 1 h 03 2 2 0 0 m 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 3 0 1 0 R XX BS 35087; BS 35088; BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB110_I:AtMYB110_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB110_II/AtMYB110_II/AthaMYB XX ID AtMYB110_II:AtMYB110_II:AthaMYB XX NA AtMYB110_II XX DE AtMYB110_II XX OS Arabidopsis thaliana XX BF 10309; XX P0 A C G T 01 1 0 1 0 r 02 0 0 1 1 k 03 0 0 0 2 T 04 1 0 1 0 r 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35091; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB110_II:AtMYB110_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB111_II/AtMYB111_II/AthaMYB XX ID AtMYB111_II:AtMYB111_II:AthaMYB XX NA AtMYB111_II XX DE AtMYB111_II XX OS Arabidopsis thaliana XX BF 10310; XX P0 A C G T 01 0 0 3 0 G 02 0 0 2 1 k 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 2 1 k 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35095; BS 35096; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB111_II:AtMYB111_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB112_II/AtMYB112_II/AthaMYB XX ID AtMYB112_II:AtMYB112_II:AthaMYB XX NA AtMYB112_II XX DE AtMYB112_II XX OS Arabidopsis thaliana XX BF 10311; XX P0 A C G T 01 2 0 3 0 r 02 0 1.67 1.67 1.67 b 03 1 0 0 4 T 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 3 0 2 0 r XX BS 35089; BS 35090; BS 35094; BS 35098; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB112_II:AtMYB112_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB113_II/AtMYB113_II/AthaMYB XX ID AtMYB113_II:AtMYB113_II:AthaMYB XX NA AtMYB113_II XX DE AtMYB113_II XX OS Arabidopsis thaliana XX BF 10312; XX P0 A C G T 01 1 0 3 0 R 02 0 1.33 1.33 1.33 b 03 0 0 0 4 T 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 3 0 1 0 R XX BS 35091; BS 35094; BS 19337; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB113_II:AtMYB113_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB114_II/AtMYB114_II/AthaMYB XX ID AtMYB114_II:AtMYB114_II:AthaMYB XX NA AtMYB114_II XX DE AtMYB114_II XX OS Arabidopsis thaliana XX BF 10313; BF 10308; XX P0 A C G T 01 1.50 0 1.50 0 r 02 0 1.50 1.50 0 s 03 0 0 0 3 T 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35091; BS 35094; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB114_II:AtMYB114_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB116_II/AtMYB116_II/AthaMYB XX ID AtMYB116_II:AtMYB116_II:AthaMYB XX NA AtMYB116_II XX DE AtMYB116_II XX OS Arabidopsis thaliana XX BF 10315; XX P0 A C G T 01 1 0 0 0 A 02 0 0 1 0 G 03 0 0 0 1 T 04 1 0 0 0 A 05 0 0 1 0 G 06 0 0 0 1 T 07 0 0 0 1 T 08 1 0 0 0 A XX BS 35090; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB116_II:AtMYB116_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB117_I/AtMYB117_I/AthaMYB XX ID AtMYB117_I:AtMYB117_I:AthaMYB XX NA AtMYB117_I XX DE AtMYB117_I XX OS Arabidopsis thaliana XX BF 10316; BF 10329; XX P0 A C G T 01 2 0 0 1 w 02 2 1 0 0 m 03 2 1 0 0 m 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35087; BS 35088; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB117_I:AtMYB117_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB117_II/AtMYB117_II/AthaMYB XX ID AtMYB117_II:AtMYB117_II:AthaMYB XX NA AtMYB117_II XX DE AtMYB117_II XX OS Arabidopsis thaliana XX BF 10316; XX P0 A C G T 01 1 0 0 0 A 02 0 0 1 0 G 03 0 0 0 1 T 04 0 0 1 0 G 05 0 0 1 0 G 06 0 0 0 1 T 07 0 0 0 1 T 08 1 0 0 0 A XX BS 35091; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB117_II:AtMYB117_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB118_II/AtMYB118_II/AthaMYB XX ID AtMYB118_II:AtMYB118_II:AthaMYB XX NA AtMYB118_II XX DE AtMYB118_II XX OS Arabidopsis thaliana XX BF 10317; XX P0 A C G T 01 0 0 2 0 G 02 0 0 0 2 T 03 1 0 0 1 w 04 1 0 1 0 r 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35089; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB118_II:AtMYB118_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB121_I/AtMYB121_I/AthaMYB XX ID AtMYB121_I:AtMYB121_I:AthaMYB XX NA AtMYB121_I XX DE AtMYB121_I XX OS Arabidopsis thaliana XX BF 10318; BF 10330; BF 10343; XX P0 A C G T 01 2 0 1 1 d 02 2 0 0 2 w 03 1 2 0 1 h 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35087; BS 35092; BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB121_I:AtMYB121_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB121_II/AtMYB121_II/AthaMYB XX ID AtMYB121_II:AtMYB121_II:AthaMYB XX NA AtMYB121_II XX DE AtMYB121_II XX OS Arabidopsis thaliana XX BF 10318; XX P0 A C G T 01 2 0 5 0 R 02 0 1 4 2 k 03 0 0 0 7 T 04 4 0 1 2 w 05 0 0 7 0 G 06 0 0 2 5 K 07 0 0 0 7 T 08 3 0 4 0 r XX BS 35090; BS 35091; BS 35094; BS 35095; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB121_II:AtMYB121_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB122_II/AtMYB122_II/AthaMYB XX ID AtMYB122_II:AtMYB122_II:AthaMYB XX NA AtMYB122_II XX DE AtMYB122_II XX OS Arabidopsis thaliana XX BF 10319; XX P0 A C G T 01 0 0 2 0 G 02 0 2 0 0 C 03 1 0 0 1 w 04 0 0 1 1 k 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35089; BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB122_II:AtMYB122_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB123_II/AtMYB123_II/AthaMYB XX ID AtMYB123_II:AtMYB123_II:AthaMYB XX NA AtMYB123_II XX DE AtMYB123_II XX OS Arabidopsis thaliana XX BF 10320; XX P0 A C G T 01 0 0 2 0 G 02 0 2 0 0 C 03 0 0 0 2 T 04 1 0 0 1 w 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35094; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB123_II:AtMYB123_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB124_II/AtMYB124_II/AthaMYB XX ID AtMYB124_II:AtMYB124_II:AthaMYB XX NA AtMYB124_II XX DE AtMYB124_II XX OS Arabidopsis thaliana XX BF 10321; BF 10366; XX P0 A C G T 01 1 0 3 0 R 02 0 1 1 2 b 03 0 0 0 4 T 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35090; BS 35094; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB124_II:AtMYB124_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB13_II/AtMYB13_II/AthaMYB XX ID AtMYB13_II:AtMYB13_II:AthaMYB XX NA AtMYB13_II XX DE AtMYB13_II XX OS Arabidopsis thaliana XX BF 10322; XX P0 A C G T 01 1 0 4 0 G 02 0 1 3 1 g 03 0 0 0 5 T 04 3 0 0 2 w 05 0 0 5 0 G 06 0 0 2 3 k 07 0 0 0 5 T 08 1 0 4 0 G XX BS 35090; BS 35094; BS 35095; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB13_II:AtMYB13_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB14_II/AtMYB14_II/AthaMYB XX ID AtMYB14_II:AtMYB14_II:AthaMYB XX NA AtMYB14_II XX DE AtMYB14_II XX OS Arabidopsis thaliana XX BF 10323; BF 10382; XX P0 A C G T 01 2 0 4 0 r 02 0 1 3 2 k 03 0 0 0 6 T 04 4 0 1 1 a 05 0 0 6 0 G 06 0 0 1 5 T 07 0 0 0 6 T 08 3 0 3 0 r XX BS 35090; BS 35091; BS 35094; BS 35095; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB14_II:AtMYB14_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB15_I/AtMYB15_I/AthaMYB XX ID AtMYB15_I:AtMYB15_I:AthaMYB XX NA AtMYB15_I XX DE AtMYB15_I XX OS Arabidopsis thaliana XX BF 10324; BF 10408; XX P0 A C G T 01 2 0 1 2 w 02 2 0 1 2 w 03 1 3 0 1 c 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35087; BS 35092; BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB15_I:AtMYB15_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB15_II/AtMYB15_II/AthaMYB XX ID AtMYB15_II:AtMYB15_II:AthaMYB XX NA AtMYB15_II XX DE AtMYB15_II XX OS Arabidopsis thaliana XX BF 10324; XX P0 A C G T 01 0 0 4 0 G 02 0 1 2 1 b 03 0 0 0 4 T 04 2 0 0 2 w 05 0 0 4 0 G 06 0 0 2 2 k 07 0 0 0 4 T 08 0 0 4 0 G XX BS 35094; BS 35095; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB15_II:AtMYB15_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB16_I/AtMYB16_I/AthaMYB XX ID AtMYB16_I:AtMYB16_I:AthaMYB XX NA AtMYB16_I XX DE AtMYB16_I XX OS Arabidopsis thaliana XX BF 10325; BF 10326; XX P0 A C G T 01 1 0 1 1 d 02 1 1 0 1 h 03 1 2 0 0 m 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35088; BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB16_I:AtMYB16_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB16_II/AtMYB16_II/AthaMYB XX ID AtMYB16_II:AtMYB16_II:AthaMYB XX NA AtMYB16_II XX DE AtMYB16_II XX OS Arabidopsis thaliana XX BF 10325; BF 10334; BF 10329; XX P0 A C G T 01 0 0 1 0 G 02 0 0 1 0 G 03 0 0 0 1 T 04 1 0 0 0 A 05 0 0 1 0 G 06 0 0 1 0 G 07 0 0 0 1 T 08 0 0 1 0 G XX BS 35095; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB16_II:AtMYB16_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB18_II/AtMYB18_II/AthaMYB XX ID AtMYB18_II:AtMYB18_II:AthaMYB XX NA AtMYB18_II XX DE AtMYB18_II XX OS Arabidopsis thaliana XX BF 10327; XX P0 A C G T 01 3 0 0 0 A 02 0 0 3 0 G 03 1 0 0 2 w 04 1 0 2 0 r 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 3 0 0 0 A XX BS 35089; BS 35090; BS 35091; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB18_II:AtMYB18_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB19_II/AtMYB19_II/AthaMYB XX ID AtMYB19_II:AtMYB19_II:AthaMYB XX NA AtMYB19_II XX DE AtMYB19_II XX OS Arabidopsis thaliana XX BF 10328; XX P0 A C G T 01 1 0 4 0 G 02 0 0 3 2 k 03 0 0 0 5 T 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 2 3 k 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35091; BS 35095; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB19_II:AtMYB19_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB1_II/AtMYB1_II/AthaMYB XX ID AtMYB1_II:AtMYB1_II:AthaMYB XX NA AtMYB1_II XX DE AtMYB1_II XX OS Arabidopsis thaliana XX BF 10296; XX P0 A C G T 01 1 0 0 0 A 02 0 0 1 0 G 03 0 0 1 0 G 04 0 0 0 1 T 05 0 0 0 1 T 06 1 0 0 0 A XX BS 35089; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB1_II:AtMYB1_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB20_II/AtMYB20_II/AthaMYB XX ID AtMYB20_II:AtMYB20_II:AthaMYB XX NA AtMYB20_II XX DE AtMYB20_II XX OS Arabidopsis thaliana XX BF 10330; XX P0 A C G T 01 1 0 3 0 R 02 0 1.33 1.33 1.33 b 03 1 0 0 3 W 04 1 0 2 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35089; BS 35091; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB20_II:AtMYB20_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB22_II/AtMYB22_II/AthaMYB XX ID AtMYB22_II:AtMYB22_II:AthaMYB XX NA AtMYB22_II XX DE AtMYB22_II XX OS Arabidopsis thaliana XX BF 10332; XX P0 A C G T 01 0 0 2 0 G 02 0 1 0 1 y 03 0 0 0 2 T 04 1 0 0 1 w 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35094; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB22_II:AtMYB22_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB23_II/AtMYB23_II/AthaMYB XX ID AtMYB23_II:AtMYB23_II:AthaMYB XX NA AtMYB23_II XX DE AtMYB23_II XX OS Arabidopsis thaliana XX BF 10333; XX P0 A C G T 01 0 0 4 0 G 02 0 1 0 3 Y 03 1 0 0 3 W 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35089; BS 35094; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB23_II:AtMYB23_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB26_II/AtMYB26_II/AthaMYB XX ID AtMYB26_II:AtMYB26_II:AthaMYB XX NA AtMYB26_II XX DE AtMYB26_II XX OS Arabidopsis thaliana XX BF 10336; XX P0 A C G T 01 0 0 3 0 G 02 0 1.50 0 1.50 y 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35094; BS 19337; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB26_II:AtMYB26_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB27_I/AtMYB27_I/AthaMYB XX ID AtMYB27_I:AtMYB27_I:AthaMYB XX NA AtMYB27_I XX DE AtMYB27_I XX OS Arabidopsis thaliana XX BF 10337; XX P0 A C G T 01 1 0 0 1 w 02 2 0 0 0 A 03 1 1 0 0 m 04 1 0 0 1 w 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35087; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB27_I:AtMYB27_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB27_II/AtMYB27_II/AthaMYB XX ID AtMYB27_II:AtMYB27_II:AthaMYB XX NA AtMYB27_II XX DE AtMYB27_II XX OS Arabidopsis thaliana XX BF 10337; BF 10357; XX P0 A C G T 01 2 0 4 0 r 02 0 1.20 2.40 2.40 k 03 1 0 0 5 T 04 3 0 2 1 r 05 0 0 6 0 G 06 0 0 0 6 T 07 0 0 0 6 T 08 4 0 2 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB27_II:AtMYB27_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB30_I/AtMYB30_I/AthaMYB XX ID AtMYB30_I:AtMYB30_I:AthaMYB XX NA AtMYB30_I XX DE AtMYB30_I XX OS Arabidopsis thaliana XX BF 10339; XX P0 A C G T 01 1 0 1 1 d 02 1 0 1 1 d 03 1 2 0 0 m 04 2 0 1 0 r 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35087; BS 35097; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB30_I:AtMYB30_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB30_II/AtMYB30_II/AthaMYB XX ID AtMYB30_II:AtMYB30_II:AthaMYB XX NA AtMYB30_II XX DE AtMYB30_II XX OS Arabidopsis thaliana XX BF 10339; BF 10370; XX P0 A C G T 01 0 0 4 0 G 02 1 0 1 2 d 03 0 1 0 3 Y 04 4 0 0 0 A 05 0 0 4 0 G 06 0 0 1 3 K 07 0 0 0 4 T 08 1 0 3 0 R XX BS 35093; BS 35095; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB30_II:AtMYB30_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB31_II/AtMYB31_II/AthaMYB XX ID AtMYB31_II:AtMYB31_II:AthaMYB XX NA AtMYB31_II XX DE AtMYB31_II XX OS Arabidopsis thaliana XX BF 10340; XX P0 A C G T 01 0 0 3 0 G 02 1 1 1 0 v 03 0 1 0 2 y 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 1 2 k 07 0 0 0 3 T 08 0 0 3 0 G XX BS 35093; BS 35094; BS 35095; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB31_II:AtMYB31_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB34_II/AtMYB34_II/AthaMYB XX ID AtMYB34_II:AtMYB34_II:AthaMYB XX NA AtMYB34_II XX DE AtMYB34_II XX OS Arabidopsis thaliana XX BF 10343; XX P0 A C G T 01 2 0 0 0 A 02 0 0 2 0 G 03 0 0 0 2 T 04 1 0 1 0 r 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35090; BS 35091; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB34_II:AtMYB34_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB35_II/AtMYB35_II/AthaMYB XX ID AtMYB35_II:AtMYB35_II:AthaMYB XX NA AtMYB35_II XX DE AtMYB35_II XX OS Arabidopsis thaliana XX BF 10344; BF 10364; XX P0 A C G T 01 1 0 1 0 r 02 0 1 1 0 s 03 0 0 0 2 T 04 1 0 0 1 w 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35090; BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB35_II:AtMYB35_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB36_II/AtMYB36_II/AthaMYB XX ID AtMYB36_II:AtMYB36_II:AthaMYB XX NA AtMYB36_II XX DE AtMYB36_II XX OS Arabidopsis thaliana XX BF 10345; BF 10365; BF 10379; XX P0 A C G T 01 0 0 3 0 G 02 0 1.50 0 1.50 y 03 1 0 0 2 w 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35089; BS 35094; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB36_II:AtMYB36_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB37_I/AtMYB37_I/AthaMYB XX ID AtMYB37_I:AtMYB37_I:AthaMYB XX NA AtMYB37_I XX DE AtMYB37_I XX OS Arabidopsis thaliana XX BF 10346; BF 10399; XX P0 A C G T 01 2 0 1 2 w 02 1 1 1 2 t 03 1 3 0 1 c 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35088; BS 35092; BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB37_I:AtMYB37_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB39_II/AtMYB39_II/AthaMYB XX ID AtMYB39_II:AtMYB39_II:AthaMYB XX NA AtMYB39_II XX DE AtMYB39_II XX OS Arabidopsis thaliana XX BF 10347; XX P0 A C G T 01 0 0 3 0 G 02 0 1.50 1.50 0 s 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 1 2 k 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35094; BS 35095; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB39_II:AtMYB39_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB40_II/AtMYB40_II/AthaMYB XX ID AtMYB40_II:AtMYB40_II:AthaMYB XX NA AtMYB40_II XX DE AtMYB40_II XX OS Arabidopsis thaliana XX BF 10349; BF 10352; BF 10356; BF 10390; BF 10404; XX P0 A C G T 01 3 0 3 0 r 02 0 1.71 2.57 1.71 b 03 1 0 0 5 T 04 3 0 2 1 r 05 0 0 6 0 G 06 0 0 0 6 T 07 0 0 0 6 T 08 4 0 2 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35098; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB40_II:AtMYB40_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB41_II/AtMYB41_II/AthaMYB XX ID AtMYB41_II:AtMYB41_II:AthaMYB XX NA AtMYB41_II XX DE AtMYB41_II XX OS Arabidopsis thaliana XX BF 10350; XX P0 A C G T 01 2.50 0 2.50 0 r 02 0 1.25 2.50 1.25 b 03 1 0 0 4 T 04 2 0 2 1 r 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 4 0 1 0 A XX BS 35089; BS 35090; BS 35091; BS 35094; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB41_II:AtMYB41_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB42_II/AtMYB42_II/AthaMYB XX ID AtMYB42_II:AtMYB42_II:AthaMYB XX NA AtMYB42_II XX DE AtMYB42_II XX OS Arabidopsis thaliana XX BF 10351; XX P0 A C G T 01 3 0 5 0 r 02 0 1.14 5.71 1.14 G 03 1 0 0 7 T 04 4 0 2 2 d 05 0 0 8 0 G 06 0 0 2 6 K 07 0 0 0 8 T 08 4 0 4 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35095; BS 35096; BS 35098; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB42_II:AtMYB42_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB44_II/AtMYB44_II/AthaMYB XX ID AtMYB44_II:AtMYB44_II:AthaMYB XX NA AtMYB44_II XX DE AtMYB44_II XX OS Arabidopsis thaliana XX BF 10353; XX P0 A C G T 01 1 0 4 0 G 02 1.25 0 1.25 2.50 d 03 1 1 0 3 t 04 4 0 1 0 A 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 3 0 2 0 r XX BS 35089; BS 35090; BS 35093; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB44_II:AtMYB44_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB45_II/AtMYB45_II/AthaMYB XX ID AtMYB45_II:AtMYB45_II:AthaMYB XX NA AtMYB45_II XX DE AtMYB45_II XX OS Arabidopsis thaliana XX BF 10354; XX P0 A C G T 01 1 0 4 0 G 02 0 1 2 2 k 03 0 0 0 5 T 04 4 0 0 1 A 05 0 0 5 0 G 06 0 0 1 4 T 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35090; BS 35094; BS 35095; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB45_II:AtMYB45_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB46_I/AtMYB46_I/AthaMYB XX ID AtMYB46_I:AtMYB46_I:AthaMYB XX NA AtMYB46_I XX DE AtMYB46_I XX OS Arabidopsis thaliana XX BF 10355; XX P0 A C G T 01 0 0 1 2 k 02 1 0 1 1 d 03 0 3 0 0 C 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB46_I:AtMYB46_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB46_II/AtMYB46_II/AthaMYB XX ID AtMYB46_II:AtMYB46_II:AthaMYB XX NA AtMYB46_II XX DE AtMYB46_II XX OS Arabidopsis thaliana XX BF 10355; XX P0 A C G T 01 1 0 3 0 R 02 0 0 3 1 K 03 0 0 0 4 T 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 2 2 k 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35090; BS 35095; BS 35096; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB46_II:AtMYB46_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB49_II/AtMYB49_II/AthaMYB XX ID AtMYB49_II:AtMYB49_II:AthaMYB XX NA AtMYB49_II XX DE AtMYB49_II XX OS Arabidopsis thaliana XX BF 10358; XX P0 A C G T 01 2 0 5 0 R 02 0 1 4 2 k 03 1 0 0 6 T 04 4 0 2 1 r 05 0 0 7 0 G 06 0 0 1 6 T 07 0 0 0 7 T 08 4 0 3 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35095; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB49_II:AtMYB49_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB4_I/AtMYB4_I/AthaMYB XX ID AtMYB4_I:AtMYB4_I:AthaMYB XX NA AtMYB4_I XX DE AtMYB4_I XX OS Arabidopsis thaliana XX BF 10348; XX P0 A C G T 01 1 0 1 0 r 02 0 1 0 1 y 03 1 1 0 0 m 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35088; BS 35097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB4_I:AtMYB4_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB50_II/AtMYB50_II/AthaMYB XX ID AtMYB50_II:AtMYB50_II:AthaMYB XX NA AtMYB50_II XX DE AtMYB50_II XX OS Arabidopsis thaliana XX BF 10360; BF 10398; XX P0 A C G T 01 0 0 6 0 G 02 0 1.20 2.40 2.40 k 03 1 0 0 5 T 04 3 0 1 2 w 05 0 0 6 0 G 06 0 0 2 4 k 07 0 0 0 6 T 08 2 0 4 0 r XX BS 35089; BS 35094; BS 35095; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB50_II:AtMYB50_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB51_II/AtMYB51_II/AthaMYB XX ID AtMYB51_II:AtMYB51_II:AthaMYB XX NA AtMYB51_II XX DE AtMYB51_II XX OS Arabidopsis thaliana XX BF 10361; XX P0 A C G T 01 2 0 0 0 A 02 0 0 2 0 G 03 0 0 0 2 T 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35090; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB51_II:AtMYB51_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB52_II/AtMYB52_II/AthaMYB XX ID AtMYB52_II:AtMYB52_II:AthaMYB XX NA AtMYB52_II XX DE AtMYB52_II XX OS Arabidopsis thaliana XX BF 10362; XX P0 A C G T 01 3 0 1 0 R 02 0 1 3 0 S 03 1 0 0 3 W 04 1 0 2 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 3 0 1 0 R XX BS 35089; BS 35090; BS 35091; BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB52_II:AtMYB52_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB53_II/AtMYB53_II/AthaMYB XX ID AtMYB53_II:AtMYB53_II:AthaMYB XX NA AtMYB53_II XX DE AtMYB53_II XX OS Arabidopsis thaliana XX BF 10363; BF 10371; XX P0 A C G T 01 0 0 4 0 G 02 0 0 2 2 k 03 0 0 0 4 T 04 3 0 0 1 W 05 0 0 4 0 G 06 0 0 2 2 k 07 0 0 0 4 T 08 1 0 3 0 R XX BS 35095; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB53_II:AtMYB53_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB58_I/AtMYB58_I/AthaMYB XX ID AtMYB58_I:AtMYB58_I:AthaMYB XX NA AtMYB58_I XX DE AtMYB58_I XX OS Arabidopsis thaliana XX BF 10367; XX P0 A C G T 01 1 0 1 0 r 02 1 0 0 1 w 03 1 1 0 0 m 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35087; BS 35097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB58_I:AtMYB58_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB58_II/AtMYB58_II/AthaMYB XX ID AtMYB58_II:AtMYB58_II:AthaMYB XX NA AtMYB58_II XX DE AtMYB58_II XX OS Arabidopsis thaliana XX BF 10367; XX P0 A C G T 01 0 0 3 0 G 02 0 0 2 1 k 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 2 1 k 07 0 0 0 3 T 08 0 0 3 0 G XX BS 35095; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB58_II:AtMYB58_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB59_II/AtMYB59_II/AthaMYB XX ID AtMYB59_II:AtMYB59_II:AthaMYB XX NA AtMYB59_II XX DE AtMYB59_II XX OS Arabidopsis thaliana XX BF 10368; BF 10400; XX P0 A C G T 01 2 0 2 0 r 02 0 1 2 1 b 03 0 0 0 4 T 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35090; BS 35091; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB59_II:AtMYB59_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB5_II/AtMYB5_II/AthaMYB XX ID AtMYB5_II:AtMYB5_II:AthaMYB XX NA AtMYB5_II XX DE AtMYB5_II XX OS Arabidopsis thaliana XX BF 10359; XX P0 A C G T 01 1 0 3 0 R 02 0 1.33 1.33 1.33 b 03 1 0 0 3 W 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 3 0 1 0 R XX BS 35089; BS 35090; BS 35094; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB5_II:AtMYB5_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB60_I/AtMYB60_I/AthaMYB XX ID AtMYB60_I:AtMYB60_I:AthaMYB XX NA AtMYB60_I XX DE AtMYB60_I XX OS Arabidopsis thaliana XX BF 10370; BF 10383; BF 10380; BF 10406; XX P0 A C G T 01 1 0 1 2 d 02 2 0 1 1 d 03 1 3 0 0 M 04 2 0 1 1 d 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35087; BS 35097; BS 35099; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB60_I:AtMYB60_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB63_I/AtMYB63_I/AthaMYB XX ID AtMYB63_I:AtMYB63_I:AthaMYB XX NA AtMYB63_I XX DE AtMYB63_I XX OS Arabidopsis thaliana XX BF 10373; XX P0 A C G T 01 3 0 1 0 R 02 1 1 0 2 h 03 2 1 0 1 h 04 4 0 0 0 A 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 3 0 1 0 R XX BS 35087; BS 35088; BS 35092; BS 35097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB63_I:AtMYB63_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB63_II/AtMYB63_II/AthaMYB XX ID AtMYB63_II:AtMYB63_II:AthaMYB XX NA AtMYB63_II XX DE AtMYB63_II XX OS Arabidopsis thaliana XX BF 10373; XX P0 A C G T 01 0 0 4 0 G 02 0 1 2 1 b 03 0 0 0 4 T 04 2 0 0 2 w 05 0 0 4 0 G 06 0 0 2 2 k 07 0 0 0 4 T 08 1 0 3 0 R XX BS 35094; BS 35095; BS 35096; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB63_II:AtMYB63_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB65_I/AtMYB65_I/AthaMYB XX ID AtMYB65_I:AtMYB65_I:AthaMYB XX NA AtMYB65_I XX DE AtMYB65_I XX OS Arabidopsis thaliana XX BF 10375; XX P0 A C G T 01 0 0 1 1 k 02 0 0 1 1 k 03 0 2 0 0 C 04 1 0 1 0 r 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35097; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB65_I:AtMYB65_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB66_II/AtMYB66_II/AthaMYB XX ID AtMYB66_II:AtMYB66_II:AthaMYB XX NA AtMYB66_II XX DE AtMYB66_II XX OS Arabidopsis thaliana XX BF 10376; XX P0 A C G T 01 2.50 0 2.50 0 r 02 0 0 2.50 2.50 k 03 1 0 0 4 T 04 3 0 2 0 r 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 4 0 1 0 A XX BS 35089; BS 35090; BS 35091; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB66_II:AtMYB66_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB67_II/AtMYB67_II/AthaMYB XX ID AtMYB67_II:AtMYB67_II:AthaMYB XX NA AtMYB67_II XX DE AtMYB67_II XX OS Arabidopsis thaliana XX BF 10377; BF 10394; XX P0 A C G T 01 3 0 4 0 r 02 0 1 3 3 k 03 1 0 0 6 T 04 4 0 2 1 r 05 0 0 7 0 G 06 0 0 0 7 T 07 0 0 0 7 T 08 5 0 2 0 R XX BS 35089; BS 35090; BS 35091; BS 35094; BS 19337; BS 35098; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB67_II:AtMYB67_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB68_II/AtMYB68_II/AthaMYB XX ID AtMYB68_II:AtMYB68_II:AthaMYB XX NA AtMYB68_II XX DE AtMYB68_II XX OS Arabidopsis thaliana XX BF 10378; XX P0 A C G T 01 1 0 1 0 r 02 0 0 2 0 G 03 0 0 0 2 T 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 1 1 k 07 0 0 0 2 T 08 1 0 1 0 r XX BS 35090; BS 35095; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB68_II:AtMYB68_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB6_II/AtMYB6_II/AthaMYB XX ID AtMYB6_II:AtMYB6_II:AthaMYB XX NA AtMYB6_II XX DE AtMYB6_II XX OS Arabidopsis thaliana XX BF 10369; XX P0 A C G T 01 1 0 2 0 r 02 0 1 1 1 b 03 0 0 0 3 T 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35091; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB6_II:AtMYB6_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB70_II/AtMYB70_II/AthaMYB XX ID AtMYB70_II:AtMYB70_II:AthaMYB XX NA AtMYB70_II XX DE AtMYB70_II XX OS Arabidopsis thaliana XX BF 10381; XX P0 A C G T 01 0 0 3 0 G 02 1.50 0 0 1.50 w 03 1 1 0 1 h 04 2 0 1 0 r 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35089; BS 35093; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB70_II:AtMYB70_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB72_II/AtMYB72_II/AthaMYB XX ID AtMYB72_II:AtMYB72_II:AthaMYB XX NA AtMYB72_II XX DE AtMYB72_II XX OS Arabidopsis thaliana XX BF 10383; XX P0 A C G T 01 2 0 3 0 r 02 0 1 3 1 g 03 0 0 0 5 T 04 3 0 1 1 a 05 0 0 5 0 G 06 0 0 1 4 T 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35090; BS 35091; BS 35094; BS 35095; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB72_II:AtMYB72_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB73_II/AtMYB73_II/AthaMYB XX ID AtMYB73_II:AtMYB73_II:AthaMYB XX NA AtMYB73_II XX DE AtMYB73_II XX OS Arabidopsis thaliana XX BF 10384; XX P0 A C G T 01 1 0 3 0 R 02 1 0 1 2 d 03 0 1 0 3 Y 04 4 0 0 0 A 05 0 0 4 0 G 06 0 0 0 4 T 07 0 0 0 4 T 08 2 0 2 0 r XX BS 35090; BS 35093; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB73_II:AtMYB73_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB74_II/AtMYB74_II/AthaMYB XX ID AtMYB74_II:AtMYB74_II:AthaMYB XX NA AtMYB74_II XX DE AtMYB74_II XX OS Arabidopsis thaliana XX BF 10385; XX P0 A C G T 01 1.50 0 1.50 0 r 02 0 1.50 1.50 0 s 03 1 0 0 2 w 04 0 0 2 1 k 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35089; BS 35091; BS 35094; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB74_II:AtMYB74_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB76_I/AtMYB76_I/AthaMYB XX ID AtMYB76_I:AtMYB76_I:AthaMYB XX NA AtMYB76_I XX DE AtMYB76_I XX OS Arabidopsis thaliana XX BF 10387; BF 10392; BF 10391; XX P0 A C G T 01 1 0 1 1 d 02 2 0 0 1 w 03 1 2 0 0 m 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35087; BS 35097; BS 35099; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB76_I:AtMYB76_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB76_II/AtMYB76_II/AthaMYB XX ID AtMYB76_II:AtMYB76_II:AthaMYB XX NA AtMYB76_II XX DE AtMYB76_II XX OS Arabidopsis thaliana XX BF 10387; XX P0 A C G T 01 1 0 2 0 r 02 0 0 3 0 G 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 2 1 k 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35090; BS 35095; BS 35096; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB76_II:AtMYB76_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB77_II/AtMYB77_II/AthaMYB XX ID AtMYB77_II:AtMYB77_II:AthaMYB XX NA AtMYB77_II XX DE AtMYB77_II XX OS Arabidopsis thaliana XX BF 10388; XX P0 A C G T 01 2 0 3 0 r 02 1.67 0 1.67 1.67 d 03 1 1 0 3 t 04 4 0 1 0 A 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 4 0 1 0 A XX BS 35089; BS 35090; BS 35093; BS 19337; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB77_II:AtMYB77_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB78_II/AtMYB78_II/AthaMYB XX ID AtMYB78_II:AtMYB78_II:AthaMYB XX NA AtMYB78_II XX DE AtMYB78_II XX OS Arabidopsis thaliana XX BF 10389; BF 10393; BF 10395; XX P0 A C G T 01 0 0 3 0 G 02 0 1.50 0 1.50 y 03 1 0 0 2 w 04 1 0 1 1 d 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35089; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB78_II:AtMYB78_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB80_II/AtMYB80_II/AthaMYB XX ID AtMYB80_II:AtMYB80_II:AthaMYB XX NA AtMYB80_II XX DE AtMYB80_II XX OS Arabidopsis thaliana XX BF 10392; XX P0 A C G T 01 1 0 5 0 G 02 0 1 3 2 k 03 0 0 0 6 T 04 4 0 0 2 w 05 0 0 6 0 G 06 0 0 2 4 k 07 0 0 0 6 T 08 2 0 4 0 r XX BS 35090; BS 35094; BS 35095; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB80_II:AtMYB80_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB84_I/AtMYB84_I/AthaMYB XX ID AtMYB84_I:AtMYB84_I:AthaMYB XX NA AtMYB84_I XX DE AtMYB84_I XX OS Arabidopsis thaliana XX BF 10396; XX P0 A C G T 01 1 0 1 1 d 02 0 1 1 1 b 03 1 2 0 0 m 04 2 0 1 0 r 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 2 0 1 0 r XX BS 35088; BS 35097; BS 35101; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB84_I:AtMYB84_I:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB84_II/AtMYB84_II/AthaMYB XX ID AtMYB84_II:AtMYB84_II:AthaMYB XX NA AtMYB84_II XX DE AtMYB84_II XX OS Arabidopsis thaliana XX BF 10396; XX P0 A C G T 01 0 0 0 1 T 02 1 0 0 0 A 03 0 0 1 0 G 04 0 0 0 1 T 05 0 0 0 1 T 06 1 0 0 0 A XX BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB84_II:AtMYB84_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB85_II/AtMYB85_II/AthaMYB XX ID AtMYB85_II:AtMYB85_II:AthaMYB XX NA AtMYB85_II XX DE AtMYB85_II XX OS Arabidopsis thaliana XX BF 10397; XX P0 A C G T 01 1 0 2 0 r 02 0 1 1 1 b 03 0 0 0 3 T 04 2 0 0 1 w 05 0 0 3 0 G 06 0 0 0 3 T 07 0 0 0 3 T 08 1 0 2 0 r XX BS 35090; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB85_II:AtMYB85_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB87_II/AtMYB87_II/AthaMYB XX ID AtMYB87_II:AtMYB87_II:AthaMYB XX NA AtMYB87_II XX DE AtMYB87_II XX OS Arabidopsis thaliana XX BF 10399; XX P0 A C G T 01 1 0 1 0 r 02 0 0 1 1 k 03 0 0 0 2 T 04 2 0 0 0 A 05 0 0 2 0 G 06 0 0 0 2 T 07 0 0 0 2 T 08 2 0 0 0 A XX BS 35090; BS 19337; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB87_II:AtMYB87_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB89_II/AtMYB89_II/AthaMYB XX ID AtMYB89_II:AtMYB89_II:AthaMYB XX NA AtMYB89_II XX DE AtMYB89_II XX OS Arabidopsis thaliana XX BF 10401; XX P0 A C G T 01 1 0 4 0 G 02 0 1.25 2.50 1.25 b 03 1 0 0 4 T 04 1 0 2 2 k 05 0 0 5 0 G 06 0 0 1 4 T 07 0 0 0 5 T 08 2 0 3 0 r XX BS 35089; BS 35091; BS 35094; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB89_II:AtMYB89_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB8_II/AtMYB8_II/AthaMYB XX ID AtMYB8_II:AtMYB8_II:AthaMYB XX NA AtMYB8_II XX DE AtMYB8_II XX OS Arabidopsis thaliana XX BF 10391; XX P0 A C G T 01 2.50 0 2.50 0 r 02 0 1.25 2.50 1.25 b 03 1 0 0 4 T 04 2 0 2 1 r 05 0 0 5 0 G 06 0 0 0 5 T 07 0 0 0 5 T 08 3 0 2 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB8_II:AtMYB8_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB93_II/AtMYB93_II/AthaMYB XX ID AtMYB93_II:AtMYB93_II:AthaMYB XX NA AtMYB93_II XX DE AtMYB93_II XX OS Arabidopsis thaliana XX BF 10405; XX P0 A C G T 01 0 0 1 0 G 02 0 0 1 0 G 03 0 0 0 1 T 04 0 0 0 1 T 05 0 0 1 0 G 06 0 0 1 0 G 07 0 0 0 1 T 08 0 0 1 0 G XX BS 35096; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB93_II:AtMYB93_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB94_II/AtMYB94_II/AthaMYB XX ID AtMYB94_II:AtMYB94_II:AthaMYB XX NA AtMYB94_II XX DE AtMYB94_II XX OS Arabidopsis thaliana XX BF 10406; BF 10408; XX P0 A C G T 01 0 0 5 0 G 02 1 1 1 2 t 03 0 1 0 4 T 04 4 0 0 1 A 05 0 0 5 0 G 06 0 0 1 4 T 07 0 0 0 5 T 08 1 0 4 0 G XX BS 35093; BS 35094; BS 35095; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB94_II:AtMYB94_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB95_II/AtMYB95_II/AthaMYB XX ID AtMYB95_II:AtMYB95_II:AthaMYB XX NA AtMYB95_II XX DE AtMYB95_II XX OS Arabidopsis thaliana XX BF 10407; XX P0 A C G T 01 2 0 5 0 R 02 0 1 4 2 k 03 1 0 0 6 T 04 3 0 2 2 d 05 0 0 7 0 G 06 0 0 1 6 T 07 0 0 0 7 T 08 4 0 3 0 r XX BS 35089; BS 35090; BS 35091; BS 35094; BS 35096; BS 19337; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB95_II:AtMYB95_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB99_II/AtMYB99_II/AthaMYB XX ID AtMYB99_II:AtMYB99_II:AthaMYB XX NA AtMYB99_II XX DE AtMYB99_II XX OS Arabidopsis thaliana XX BF 10410; XX P0 A C G T 01 2 0 4 0 r 02 0 1 4 1 g 03 0 0 0 6 T 04 3 0 1 2 w 05 0 0 6 0 G 06 0 0 2 4 k 07 0 0 0 6 T 08 2 0 4 0 r XX BS 35090; BS 35091; BS 35094; BS 35095; BS 35096; BS 35098; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB99_II:AtMYB99_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB9_II/AtMYB9_II/AthaMYB XX ID AtMYB9_II:AtMYB9_II:AthaMYB XX NA AtMYB9_II XX DE AtMYB9_II XX OS Arabidopsis thaliana XX BF 10402; XX P0 A C G T 01 2 0 4 0 r 02 0 2 4 0 s 03 1 0 0 5 T 04 3 0 1 2 w 05 0 0 6 0 G 06 0 0 2 4 k 07 0 0 0 6 T 08 3 0 3 0 r XX BS 35089; BS 35090; BS 35094; BS 35095; BS 35096; BS 35100; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB9_II:AtMYB9_II:AthaMYB XX RN [1]; RX PUBMED: 26484765 RL Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK19363.1/M0004_1.02/CISBP XX ID PK19363.1:M0004_1.02:CISBP XX NA PK19363.1 XX DE PK19363.1 XX OS Cannabis sativa XX BF 10413; XX P0 A C G T 01 0.1500 0.7165 0.0751 0.0584 C 02 0.0255 0.0128 0.9489 0.0128 G 03 0.0189 0.8741 0.1070 0.0001 C 04 0.0189 0.9747 0.0064 0.0001 C 05 0.0001 0.0064 0.9935 0.0001 G 06 0.0589 0.6274 0.1373 0.1765 c 07 0.1579 0.7743 0.0076 0.0602 C 08 0.4888 0.0667 0.3000 0.1445 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK19363.1:M0004_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ORA59/M0005_1.02/CISBP XX ID ORA59:M0005_1.02:CISBP XX NA ORA59 XX DE ORA59 XX OS Arabidopsis thaliana XX BF 4822; XX P0 A C G T 01 0.3460 0.4612 0.1924 0.0004 m 02 0.0002 0.0002 0.9993 0.0002 G 03 0.0002 0.9993 0.0002 0.0002 C 04 0.1221 0.8774 0.0002 0.0002 C 05 0.0246 0.0002 0.9749 0.0002 G 06 0.0002 0.9505 0.0490 0.0002 C 07 0.0002 0.9993 0.0002 0.0002 C 08 0.2414 0.1037 0.4824 0.1725 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ORA59:M0005_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WIN1/M0006_1.02/CISBP XX ID WIN1:M0006_1.02:CISBP XX NA WIN1 XX DE WIN1 XX OS Arabidopsis thaliana XX BF 10414; XX P0 A C G T 01 0.2488 0.3901 0.2668 0.0943 s 02 0.1370 0.7205 0.1329 0.0096 C 03 0.3841 0.0007 0.6146 0.0006 r 04 0.0010 0.7952 0.1865 0.0173 C 05 0.0011 0.9556 0.0007 0.0426 C 06 0.2019 0.0092 0.7117 0.0773 G 07 0.1642 0.6792 0.0791 0.0775 c 08 0.3485 0.3520 0.1550 0.1445 m 09 0.2531 0.1630 0.4257 0.1582 r 10 0.1841 0.2387 0.1716 0.4056 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WIN1:M0006_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G22985/M0007_1.02/CISBP XX ID AT1G22985:M0007_1.02:CISBP XX NA AT1G22985 XX DE AT1G22985 XX OS Arabidopsis thaliana XX BF 2584; XX P0 A C G T 01 0.1933 0.2941 0.3155 0.1972 s 02 0.1973 0.4709 0.1750 0.1568 c 03 0.0180 0.0003 0.9816 0.0002 G 04 0.0609 0.8284 0.0864 0.0243 C 05 0.0978 0.6803 0.0761 0.1458 C 06 0.1794 0.0001 0.8203 0.0002 G 07 0.1382 0.4193 0.2124 0.2301 c 08 0.2239 0.4038 0.1927 0.1796 c 09 0.3514 0.2089 0.2309 0.2089 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G22985:M0007_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TEM1/M0008_1.02/CISBP XX ID TEM1:M0008_1.02:CISBP XX NA TEM1 XX DE TEM1 XX OS Arabidopsis thaliana XX BF 5566; XX P0 A C G T 01 0.2750 0.0002 0.1251 0.5997 w 02 0.7583 0.2414 0.0002 0.0002 A 03 0.0002 0.0002 0.0002 0.9995 T 04 0.0002 0.0002 0.9995 0.0002 G 05 0.0002 0.0002 0.0002 0.9995 T 06 0.0002 0.1095 0.0158 0.8746 T 07 0.0002 0.0002 0.9118 0.0878 G 08 0.0002 0.6825 0.0977 0.2195 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TEM1:M0008_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF11/M0009_1.02/CISBP XX ID ERF11:M0009_1.02:CISBP XX NA ERF11 XX DE ERF11 XX OS Arabidopsis thaliana XX BF 10415; XX P0 A C G T 01 0.2057 0.3130 0.3162 0.1651 s 02 0.2133 0.4941 0.1231 0.1695 c 03 0.1087 0.0000 0.8873 0.0040 G 04 0.0247 0.8349 0.0550 0.0854 C 05 0.1451 0.7044 0.0513 0.0992 C 06 0.1315 0.0099 0.8278 0.0308 G 07 0.1902 0.3830 0.1542 0.2726 y 08 0.2583 0.4898 0.0770 0.1749 m 09 0.4239 0.1623 0.1812 0.2326 a 10 0.2758 0.1963 0.2043 0.3236 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF11:M0009_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2.6/M0010_1.02/CISBP XX ID RAP2.6:M0010_1.02:CISBP XX NA RAP2.6 XX DE RAP2.6 XX OS Arabidopsis thaliana XX BF 5568; XX P0 A C G T 01 0.1845 0.2566 0.3197 0.2392 s 02 0.1059 0.3809 0.1854 0.3278 y 03 0.0456 0.0008 0.9524 0.0013 G 04 0.0370 0.7821 0.0542 0.1267 C 05 0.0302 0.6246 0.1107 0.2344 c 06 0.1361 0.0931 0.7018 0.0690 G 07 0.1767 0.1914 0.3630 0.2689 k 08 0.1994 0.4855 0.0970 0.2181 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2.6:M0010_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF3/M0011_1.02/CISBP XX ID ERF3:M0011_1.02:CISBP XX NA ERF3 XX DE ERF3 XX OS Arabidopsis thaliana XX BF 7506; XX P0 A C G T 01 0.0801 0.7596 0.0801 0.0801 C 02 0.0144 0.0001 0.9853 0.0001 G 03 0.0001 0.8854 0.1144 0.0001 C 04 0.0001 0.9853 0.0144 0.0001 C 05 0.0144 0.0001 0.9853 0.0001 G 06 0.0573 0.6426 0.1858 0.1144 c 07 0.0795 0.9043 0.0002 0.0160 C 08 0.5811 0.0235 0.2790 0.1164 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF3:M0011_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF-8/M0012_1.02/CISBP XX ID ATERF-8:M0012_1.02:CISBP XX NA ATERF-8 XX DE ATERF-8 XX OS Arabidopsis thaliana XX BF 10416; XX P0 A C G T 01 0.2021 0.5717 0.0974 0.1288 c 02 0.0383 0.0002 0.9585 0.0030 G 03 0.0093 0.9082 0.0635 0.0189 C 04 0.1137 0.8073 0.0313 0.0476 C 05 0.0748 0.0532 0.8407 0.0313 G 06 0.1536 0.4524 0.1506 0.2434 c 07 0.1974 0.6051 0.0583 0.1391 c 08 0.4487 0.1753 0.1843 0.1918 a 09 0.2727 0.2061 0.1847 0.3365 w 10 0.2900 0.2064 0.1925 0.3111 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF-8:M0012_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TEM2/M0013_1.02/CISBP XX ID TEM2:M0013_1.02:CISBP XX NA TEM2 XX DE TEM2 XX OS Arabidopsis thaliana XX BF 10417; XX P0 A C G T 01 0.1877 0.0006 0.2500 0.5617 k 02 0.8625 0.1366 0.0005 0.0005 A 03 0.0005 0.0005 0.0005 0.9986 T 04 0.0005 0.0005 0.9986 0.0005 G 05 0.0005 0.0005 0.0005 0.9986 T 06 0.0005 0.0912 0.0005 0.9079 T 07 0.0005 0.0005 0.9986 0.0005 G 08 0.0007 0.7130 0.0719 0.2144 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TEM2:M0013_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ORA47/M0014_1.02/CISBP XX ID ORA47:M0014_1.02:CISBP XX NA ORA47 XX DE ORA47 XX OS Arabidopsis thaliana XX BF 8889; XX P0 A C G T 01 0.1693 0.4041 0.1610 0.2655 y 02 0.4868 0.0114 0.4025 0.0993 r 03 0.0362 0.8960 0.0279 0.0400 C 04 0.0275 0.9375 0.0011 0.0339 C 05 0.0636 0.0004 0.9086 0.0274 G 06 0.3548 0.1908 0.1889 0.2655 w 07 0.0755 0.8076 0.0458 0.0711 C 08 0.2306 0.4931 0.0986 0.1778 c 09 0.3655 0.1889 0.2006 0.2450 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ORA47:M0014_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G75490/M0015_1.02/CISBP XX ID AT1G75490:M0015_1.02:CISBP XX NA AT1G75490 XX DE AT1G75490 XX OS Arabidopsis thaliana XX BF 10418; XX P0 A C G T 01 0.2057 0.2804 0.2749 0.2390 s 02 0.2196 0.4207 0.1816 0.1780 c 03 0.6081 0.0001 0.3916 0.0002 r 04 0.0206 0.9488 0.0267 0.0038 C 05 0.0323 0.9112 0.0194 0.0371 C 06 0.0648 0.0002 0.8558 0.0792 G 07 0.3529 0.3130 0.1223 0.2119 m 08 0.2155 0.3811 0.1504 0.2529 y 09 0.3194 0.2366 0.1635 0.2805 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G75490:M0015_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2.4/M0016_1.02/CISBP XX ID RAP2.4:M0016_1.02:CISBP XX NA RAP2.4 XX DE RAP2.4 XX OS Arabidopsis thaliana XX BF 10419; XX P0 A C G T 01 0.1808 0.5540 0.1287 0.1366 c 02 0.5840 0.0002 0.4157 0.0001 r 03 0.0010 0.9333 0.0653 0.0004 C 04 0.0012 0.9680 0.0001 0.0307 C 05 0.0935 0.0068 0.7867 0.1130 G 06 0.4968 0.2418 0.0805 0.1809 a 07 0.0987 0.8225 0.0004 0.0784 C 08 0.2706 0.5504 0.0525 0.1265 m 09 0.4682 0.1410 0.1606 0.2302 a 10 0.2685 0.2454 0.1892 0.2968 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2.4:M0016_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF15/M0017_1.02/CISBP XX ID ATERF15:M0017_1.02:CISBP XX NA ATERF15 XX DE ATERF15 XX OS Arabidopsis thaliana XX BF 4982; XX P0 A C G T 01 0.2000 0.5000 0.1333 0.1667 c 02 0.0270 0.0541 0.8919 0.0270 G 03 0.0263 0.6053 0.3421 0.0263 s 04 0.0263 0.8947 0.0526 0.0263 C 05 0.0789 0.0263 0.8421 0.0526 G 06 0.0263 0.2368 0.7105 0.0263 G 07 0.0270 0.9189 0.0270 0.0270 C 08 0.1034 0.5862 0.1724 0.1379 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF15:M0017_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G33710/M0018_1.02/CISBP XX ID AT2G33710:M0018_1.02:CISBP XX NA AT2G33710 XX DE AT2G33710 XX OS Arabidopsis thaliana XX BF 10420; XX P0 A C G T 01 0.1888 0.2400 0.3917 0.1796 g 02 0.1002 0.4359 0.3463 0.1176 s 03 0.2227 0.6054 0.1174 0.0544 c 04 0.0145 0.0006 0.9129 0.0720 G 05 0.0002 0.9973 0.0020 0.0005 C 06 0.0424 0.9508 0.0037 0.0032 C 07 0.0361 0.0276 0.9034 0.0330 G 08 0.1707 0.5181 0.1005 0.2106 c 09 0.2358 0.6606 0.0367 0.0669 c 10 0.4778 0.1328 0.2396 0.1498 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G33710:M0018_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HRD/M0019_1.02/CISBP XX ID HRD:M0019_1.02:CISBP XX NA HRD XX DE HRD XX OS Arabidopsis thaliana XX BF 10421; XX P0 A C G T 01 0.1900 0.2921 0.2344 0.2835 y 02 0.1727 0.2262 0.1889 0.4122 t 03 0.3067 0.0379 0.5759 0.0795 r 04 0.0000 0.8882 0.0182 0.0936 C 05 0.0358 0.8779 0.0464 0.0399 C 06 0.0404 0.0362 0.8959 0.0276 G 07 0.5364 0.2410 0.0763 0.1462 a 08 0.0943 0.7105 0.0981 0.0971 C 09 0.4209 0.1564 0.2219 0.2008 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HRD:M0019_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF13/M0020_1.02/CISBP XX ID ATERF13:M0020_1.02:CISBP XX NA ATERF13 XX DE ATERF13 XX OS Arabidopsis thaliana XX BF 2589; XX P0 A C G T 01 0.2174 0.4781 0.2826 0.0219 s 02 0.0002 0.0485 0.9512 0.0002 G 03 0.0163 0.9512 0.0324 0.0002 C 04 0.0002 0.9834 0.0163 0.0002 C 05 0.0002 0.0163 0.9834 0.0002 G 06 0.0969 0.6449 0.1452 0.1130 c 07 0.0002 0.9995 0.0002 0.0002 C 08 0.4613 0.1027 0.2820 0.1539 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF13:M0020_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2.2/M0021_1.02/CISBP XX ID RAP2.2:M0021_1.02:CISBP XX NA RAP2.2 XX DE RAP2.2 XX OS Arabidopsis thaliana XX BF 10422; XX P0 A C G T 01 0.2533 0.2386 0.2137 0.2943 w 02 0.2385 0.2180 0.2636 0.2799 k 03 0.2162 0.0720 0.5819 0.1298 g 04 0.1143 0.5019 0.2443 0.1395 c 05 0.0096 0.6646 0.0023 0.3235 y 06 0.2035 0.0045 0.7773 0.0147 G 07 0.1482 0.3265 0.2810 0.2443 s 08 0.2390 0.3460 0.2251 0.1899 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2.2:M0021_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF-4/M0022_1.02/CISBP XX ID ATERF-4:M0022_1.02:CISBP XX NA ATERF-4 XX DE ATERF-4 XX OS Arabidopsis thaliana XX BF 7507; XX P0 A C G T 01 0.1686 0.5167 0.2247 0.0900 c 02 0.0648 0.7265 0.1151 0.0936 C 03 0.0239 0.0179 0.9522 0.0060 G 04 0.0120 0.8987 0.0834 0.0060 C 05 0.0120 0.9760 0.0120 0.0001 C 06 0.0060 0.0060 0.9879 0.0001 G 07 0.0563 0.6624 0.1313 0.1500 c 08 0.1231 0.7998 0.0385 0.0385 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF-4:M0022_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF-7/M0023_1.02/CISBP XX ID ATERF-7:M0023_1.02:CISBP XX NA ATERF-7 XX DE ATERF-7 XX OS Arabidopsis thaliana XX BF 2877; XX P0 A C G T 01 0.2625 0.4416 0.1398 0.1561 m 02 0.0769 0.0145 0.8740 0.0346 G 03 0.0482 0.8679 0.0836 0.0003 C 04 0.1285 0.7699 0.0365 0.0651 C 05 0.0904 0.0249 0.8750 0.0097 G 06 0.1459 0.4562 0.1320 0.2659 y 07 0.2118 0.5933 0.0664 0.1285 c 08 0.4186 0.1736 0.2100 0.1977 a 09 0.2759 0.2085 0.1983 0.3173 w 10 0.2791 0.2088 0.2006 0.3115 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF-7:M0023_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G23230/M0024_1.02/CISBP XX ID AT3G23230:M0024_1.02:CISBP XX NA AT3G23230 XX DE AT3G23230 XX OS Arabidopsis thaliana XX BF 10423; XX P0 A C G T 01 0.2147 0.3170 0.2702 0.1981 s 02 0.2483 0.3559 0.2225 0.1733 c 03 0.0956 0.0628 0.8043 0.0373 G 04 0.0256 0.7456 0.1664 0.0624 C 05 0.1508 0.7694 0.0100 0.0698 C 06 0.1921 0.0388 0.7561 0.0130 G 07 0.1898 0.4485 0.1700 0.1917 c 08 0.1250 0.6774 0.0993 0.0983 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G23230:M0024_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF1/M0025_1.02/CISBP XX ID ERF1:M0025_1.02:CISBP XX NA ERF1 XX DE ERF1 XX OS Arabidopsis thaliana XX BF 4198; XX P0 A C G T 01 0.1760 0.3779 0.2701 0.1760 s 02 0.3031 0.5031 0.0969 0.0969 m 03 0.0001 0.0001 0.9996 0.0001 G 04 0.0001 0.9996 0.0001 0.0001 C 05 0.0001 0.9996 0.0001 0.0001 C 06 0.0001 0.0001 0.9996 0.0001 G 07 0.0001 0.9996 0.0001 0.0001 C 08 0.0001 0.9996 0.0001 0.0001 C 09 0.3594 0.0741 0.4923 0.0741 r 10 0.1533 0.2555 0.2407 0.3505 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF1:M0025_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G16750/M0026_1.02/CISBP XX ID AT4G16750:M0026_1.02:CISBP XX NA AT4G16750 XX DE AT4G16750 XX OS Arabidopsis thaliana XX BF 2592; XX P0 A C G T 01 0.2502 0.2356 0.2738 0.2404 r 02 0.1654 0.2419 0.1201 0.4726 t 03 0.0432 0.0110 0.9122 0.0336 G 04 0.1146 0.0858 0.1400 0.6596 t 05 0.0037 0.9890 0.0025 0.0048 C 06 0.0062 0.0017 0.9801 0.0120 G 07 0.0191 0.0084 0.9651 0.0073 G 08 0.0201 0.4164 0.0393 0.5241 y 09 0.2443 0.1705 0.3949 0.1903 g 10 0.2614 0.2250 0.3161 0.1976 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G16750:M0026_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF6/M0027_1.02/CISBP XX ID ATERF6:M0027_1.02:CISBP XX NA ATERF6 XX DE ATERF6 XX OS Arabidopsis thaliana XX BF 5590; XX P0 A C G T 01 0.2906 0.3521 0.1786 0.1786 m 02 0.0781 0.2207 0.1661 0.5351 t 03 0.0001 0.0001 0.9997 0.0001 G 04 0.0001 0.9997 0.0001 0.0001 C 05 0.0001 0.9997 0.0001 0.0001 C 06 0.0001 0.0001 0.9997 0.0001 G 07 0.0001 0.0881 0.9117 0.0001 G 08 0.0001 0.9997 0.0001 0.0001 C 09 0.1587 0.1561 0.5303 0.1549 g 10 0.1720 0.2777 0.2566 0.2938 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF6:M0027_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATERF-1/M0028_1.02/CISBP XX ID ATERF-1:M0028_1.02:CISBP XX NA ATERF-1 XX DE ATERF-1 XX OS Arabidopsis thaliana XX BF 7505; XX P0 A C G T 01 0.2167 0.3233 0.2620 0.1980 s 02 0.2971 0.4707 0.1138 0.1184 m 03 0.0536 0.0001 0.9462 0.0000 G 04 0.0576 0.8323 0.0477 0.0624 C 05 0.1271 0.7843 0.0326 0.0560 C 06 0.2059 0.0925 0.6186 0.0829 g 07 0.2420 0.3469 0.1328 0.2784 y 08 0.1281 0.6806 0.0669 0.1243 C 09 0.3072 0.3198 0.1408 0.2322 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATERF-1:M0028_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CRF2/M0029_1.02/CISBP XX ID CRF2:M0029_1.02:CISBP XX NA CRF2 XX DE CRF2 XX OS Arabidopsis thaliana XX BF 10424; XX P0 A C G T 01 0.0438 0.4779 0.3477 0.1306 s 02 0.1083 0.7832 0.0813 0.0273 C 03 0.0002 0.0002 0.9993 0.0002 G 04 0.0002 0.9766 0.0229 0.0002 C 05 0.0002 0.9993 0.0002 0.0002 C 06 0.0002 0.0002 0.9993 0.0002 G 07 0.0229 0.9312 0.0002 0.0456 C 08 0.1178 0.7347 0.0590 0.0884 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CRF2:M0029_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC FTQ4/M0030_1.02/CISBP XX ID FTQ4:M0030_1.02:CISBP XX NA FTQ4 XX DE FTQ4 XX OS Arabidopsis thaliana XX BF 7500; XX P0 A C G T 01 0.9901 0.0033 0.0033 0.0033 A 02 0.0033 0.0033 0.0033 0.9901 T 03 0.0033 0.0033 0.9901 0.0033 G 04 0.0033 0.0033 0.0033 0.9901 T 05 0.0033 0.9901 0.0033 0.0033 C 06 0.0033 0.0033 0.9901 0.0033 G 07 0.0033 0.0033 0.9901 0.0033 G 08 0.0049 0.4951 0.0049 0.4951 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=FTQ4:M0030_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATCBF3/M0031_1.02/CISBP XX ID ATCBF3:M0031_1.02:CISBP XX NA ATCBF3 XX DE ATCBF3 XX OS Arabidopsis thaliana XX BF 7498; XX P0 A C G T 01 0.2249 0.2208 0.2457 0.3086 t 02 0.5113 0.1382 0.1676 0.1830 a 03 0.1287 0.2107 0.1387 0.5219 t 04 0.0319 0.0030 0.9580 0.0070 G 05 0.0274 0.0111 0.0020 0.9595 T 06 0.0107 0.9593 0.0000 0.0301 C 07 0.0679 0.0037 0.8884 0.0400 G 08 0.0902 0.0001 0.8936 0.0161 G 09 0.0157 0.5334 0.0145 0.4365 y 10 0.3712 0.2079 0.2666 0.1543 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATCBF3:M0031_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CRF4/M0033_1.02/CISBP XX ID CRF4:M0033_1.02:CISBP XX NA CRF4 XX DE CRF4 XX OS Arabidopsis thaliana XX BF 10425; XX P0 A C G T 01 0.0699 0.3255 0.5346 0.0699 s 02 0.1078 0.7689 0.0617 0.0617 C 03 0.0001 0.0001 0.9996 0.0001 G 04 0.0001 0.9743 0.0254 0.0001 C 05 0.0001 0.9996 0.0001 0.0001 C 06 0.0001 0.0128 0.9870 0.0001 G 07 0.0677 0.7565 0.0677 0.1082 C 08 0.0969 0.7900 0.0646 0.0485 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CRF4:M0033_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G32800/M0034_1.02/CISBP XX ID AT4G32800:M0034_1.02:CISBP XX NA AT4G32800 XX DE AT4G32800 XX OS Arabidopsis thaliana XX BF 2594; XX P0 A C G T 01 0.0008 0.0775 0.0008 0.9210 T 02 0.0006 0.0006 0.9981 0.0006 G 03 0.0006 0.0006 0.0006 0.9981 T 04 0.0006 0.9981 0.0006 0.0006 C 05 0.0006 0.0006 0.9981 0.0006 G 06 0.0006 0.0006 0.9981 0.0006 G 07 0.0006 0.2500 0.0006 0.7488 Y 08 0.2002 0.1006 0.5986 0.1006 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G32800:M0034_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G07580/M0035_1.02/CISBP XX ID AT5G07580:M0035_1.02:CISBP XX NA AT5G07580 XX DE AT5G07580 XX OS Arabidopsis thaliana XX BF 10426; XX P0 A C G T 01 0.1252 0.2813 0.1983 0.3953 y 02 0.0889 0.1043 0.6701 0.1367 g 03 0.1102 0.3514 0.3585 0.1798 s 04 0.0116 0.6753 0.0035 0.3095 y 05 0.1391 0.0566 0.6960 0.1083 G 06 0.1219 0.1931 0.4798 0.2051 g 07 0.1592 0.4783 0.1343 0.2282 c 08 0.1683 0.3192 0.2118 0.3006 y 09 0.2252 0.2616 0.2489 0.2643 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G07580:M0035_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Rap2.6L/M0036_1.02/CISBP XX ID Rap2.6L:M0036_1.02:CISBP XX NA Rap2.6L XX DE Rap2.6L XX OS Arabidopsis thaliana XX BF 5599; XX P0 A C G T 01 0.1787 0.3492 0.2747 0.1975 s 02 0.2560 0.4436 0.1733 0.1271 m 03 0.0749 0.0287 0.8854 0.0110 G 04 0.0366 0.7649 0.1440 0.0546 C 05 0.1032 0.8020 0.0420 0.0528 C 06 0.1129 0.0828 0.7472 0.0572 G 07 0.1820 0.4131 0.1196 0.2854 y 08 0.2765 0.4559 0.0930 0.1746 m 09 0.3871 0.2082 0.1922 0.2124 a 10 0.2862 0.2120 0.1918 0.3100 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Rap2.6L:M0036_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G43410/M0037_1.02/CISBP XX ID AT5G43410:M0037_1.02:CISBP XX NA AT5G43410 XX DE AT5G43410 XX OS Arabidopsis thaliana XX BF 10427; XX P0 A C G T 01 0.1933 0.3001 0.2798 0.2268 s 02 0.2894 0.4678 0.1670 0.0758 m 03 0.0340 0.0133 0.9395 0.0133 G 04 0.0321 0.9051 0.0358 0.0271 C 05 0.0971 0.8500 0.0206 0.0323 C 06 0.0426 0.0104 0.9280 0.0190 G 07 0.1293 0.5913 0.1306 0.1488 c 08 0.0347 0.9026 0.0244 0.0383 C 09 0.3838 0.1759 0.2399 0.2004 a 10 0.2325 0.2544 0.2234 0.2897 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G43410:M0037_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF2/M0038_1.02/CISBP XX ID ERF2:M0038_1.02:CISBP XX NA ERF2 XX DE ERF2 XX OS Arabidopsis thaliana XX BF 2867; XX P0 A C G T 01 0.2552 0.2552 0.2132 0.2765 h 02 0.2312 0.2740 0.2659 0.2289 s 03 0.2898 0.3202 0.2372 0.1528 m 04 0.1321 0.0802 0.7234 0.0643 G 05 0.0944 0.6905 0.1408 0.0743 C 06 0.1728 0.7009 0.0422 0.0841 C 07 0.1595 0.0239 0.7744 0.0422 G 08 0.1777 0.4641 0.1455 0.2127 c 09 0.1211 0.6829 0.0897 0.1063 C 10 0.3425 0.2228 0.2206 0.2141 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF2:M0038_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF5/M0039_1.02/CISBP XX ID ERF5:M0039_1.02:CISBP XX NA ERF5 XX DE ERF5 XX OS Arabidopsis thaliana XX BF 1971; XX P0 A C G T 01 0.2735 0.2735 0.2006 0.2525 h 02 0.2306 0.2734 0.2653 0.2306 s 03 0.2782 0.3681 0.1883 0.1654 m 04 0.1445 0.0582 0.7452 0.0521 G 05 0.1156 0.6139 0.1759 0.0946 c 06 0.1859 0.6688 0.0719 0.0734 c 07 0.2135 0.1195 0.5861 0.0809 g 08 0.1972 0.3522 0.2073 0.2433 c 09 0.1665 0.6050 0.1051 0.1234 c 10 0.3204 0.2928 0.1741 0.2126 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF5:M0039_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G51190/M0040_1.02/CISBP XX ID AT5G51190:M0040_1.02:CISBP XX NA AT5G51190 XX DE AT5G51190 XX OS Arabidopsis thaliana XX BF 10428; XX P0 A C G T 01 0.0012 0.1256 0.2500 0.6231 k 02 0.0008 0.0008 0.9977 0.0008 G 03 0.0007 0.9979 0.0007 0.0007 C 04 0.0007 0.9266 0.0719 0.0007 C 05 0.0007 0.0007 0.9979 0.0007 G 06 0.0007 0.1432 0.8554 0.0007 G 07 0.0007 0.9979 0.0007 0.0007 C 08 0.1006 0.1006 0.6982 0.1006 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G51190:M0040_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CRF3/M0041_1.02/CISBP XX ID CRF3:M0041_1.02:CISBP XX NA CRF3 XX DE CRF3 XX OS Arabidopsis thaliana XX BF 5608; XX P0 A C G T 01 0.1881 0.3132 0.3009 0.1977 s 02 0.2248 0.4807 0.1568 0.1377 c 03 0.0547 0.0001 0.9450 0.0003 G 04 0.0219 0.8846 0.0477 0.0458 C 05 0.0926 0.7711 0.0620 0.0743 C 06 0.1735 0.0971 0.6177 0.1117 g 07 0.1956 0.4225 0.1406 0.2413 c 08 0.2194 0.4645 0.1253 0.1908 c 09 0.3422 0.2364 0.2139 0.2076 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CRF3:M0041_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g45450/M0042_1.02/CISBP XX ID LOC_Os02g45450:M0042_1.02:CISBP XX NA LOC_Os02g45450 XX DE LOC_Os02g45450 XX OS Oryza sativa XX BF 10429; XX P0 A C G T 01 0.3145 0.2285 0.2285 0.2285 a 02 0.1195 0.2262 0.1195 0.5348 t 03 0.1796 0.0002 0.8200 0.0002 G 04 0.0002 0.9994 0.0002 0.0002 C 05 0.0002 0.9994 0.0002 0.0002 C 06 0.0002 0.0002 0.9994 0.0002 G 07 0.8841 0.0002 0.1155 0.0002 A 08 0.0002 0.9994 0.0002 0.0002 C 09 0.8453 0.0217 0.0217 0.1114 A 10 0.1307 0.2185 0.2206 0.4302 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g45450:M0042_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os05g41760/M0043_1.02/CISBP XX ID LOC_Os05g41760:M0043_1.02:CISBP XX NA LOC_Os05g41760 XX DE LOC_Os05g41760 XX OS Oryza sativa XX BF 10430; XX P0 A C G T 01 0.0033 0.9901 0.0033 0.0033 C 02 0.0033 0.0033 0.9901 0.0033 G 03 0.0033 0.6612 0.3322 0.0033 s 04 0.0033 0.9901 0.0033 0.0033 C 05 0.0033 0.0033 0.9901 0.0033 G 06 0.0033 0.9901 0.0033 0.0033 C 07 0.0033 0.9901 0.0033 0.0033 C 08 0.4951 0.0049 0.4951 0.0049 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os05g41760:M0043_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os08g36920/M0044_1.02/CISBP XX ID LOC_Os08g36920:M0044_1.02:CISBP XX NA LOC_Os08g36920 XX DE LOC_Os08g36920 XX OS Oryza sativa XX BF 10431; XX P0 A C G T 01 0.2286 0.2477 0.2527 0.2710 k 02 0.1938 0.3228 0.2514 0.2320 s 03 0.2263 0.3444 0.2403 0.1890 c 04 0.1703 0.0001 0.7942 0.0354 G 05 0.0202 0.6355 0.3093 0.0350 s 06 0.0000 0.9987 0.0007 0.0006 C 07 0.0000 0.0000 0.9999 0.0001 G 08 0.2088 0.4885 0.0004 0.3023 y 09 0.3044 0.3200 0.1589 0.2167 m 10 0.3530 0.1899 0.2297 0.2274 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os08g36920:M0044_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_4800009/M0072_1.02/CISBP XX ID estExt_fgenesh1_pg.C_4800009:M0072_1.02:CISBP XX NA estExt_fgenesh1_pg.C_4800009 XX DE estExt_fgenesh1_pg.C_4800009 XX OS Physcomitrella patens XX BF 10451; XX P0 A C G T 01 0.0719 0.0007 0.2856 0.6417 k 02 0.0005 0.0005 0.9985 0.0005 G 03 0.0504 0.0005 0.0005 0.9486 T 04 0.0005 0.9985 0.0005 0.0005 C 05 0.0005 0.0005 0.9985 0.0005 G 06 0.0005 0.0005 0.9985 0.0005 G 07 0.0005 0.1502 0.0005 0.8488 T 08 0.0839 0.0008 0.6653 0.2500 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_4800009:M0072_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_gwp_gw1.C_550163/M0073_1.02/CISBP XX ID estExt_gwp_gw1.C_550163:M0073_1.02:CISBP XX NA estExt_gwp_gw1.C_550163 XX DE estExt_gwp_gw1.C_550163 XX OS Physcomitrella patens XX BF 10452; XX P0 A C G T 01 0.2922 0.1798 0.1798 0.3482 w 02 0.1438 0.0791 0.2885 0.4885 k 03 0.0001 0.0001 0.9997 0.0001 G 04 0.0001 0.0001 0.0001 0.9997 T 05 0.0001 0.9997 0.0001 0.0001 C 06 0.0001 0.0001 0.9997 0.0001 G 07 0.0001 0.0001 0.9997 0.0001 G 08 0.0001 0.0762 0.0001 0.9237 T 09 0.0703 0.0703 0.7892 0.0703 G 10 0.2921 0.2465 0.2905 0.1709 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_gwp_gw1.C_550163:M0073_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.scaffold_1000495/M0074_1.02/CISBP XX ID fgenesh1_pg.scaffold_1000495:M0074_1.02:CISBP XX NA fgenesh1_pg.scaffold_1000495 XX DE fgenesh1_pg.scaffold_1000495 XX OS Physcomitrella patens XX BF 10453; XX P0 A C G T 01 0.2644 0.2726 0.1797 0.2833 h 02 0.0410 0.0410 0.0410 0.8771 T 03 0.0198 0.0198 0.8533 0.1071 G 04 0.1071 0.0198 0.1254 0.7477 T 05 0.0198 0.9406 0.0198 0.0198 C 06 0.0001 0.0874 0.9124 0.0001 G 07 0.0874 0.0001 0.9124 0.0001 G 08 0.0001 0.0001 0.0001 0.9997 T 09 0.6083 0.0704 0.1576 0.1638 a 10 0.2880 0.2091 0.2091 0.2937 w 11 0.3092 0.2303 0.2303 0.2303 a 12 0.3092 0.2303 0.2303 0.2303 a 13 0.3092 0.2303 0.2303 0.2303 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.scaffold_1000495:M0074_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.8.141.1/M0075_1.02/CISBP XX ID gw1.8.141.1:M0075_1.02:CISBP XX NA gw1.8.141.1 XX DE gw1.8.141.1 XX OS Physcomitrella patens XX BF 10454; XX P0 A C G T 01 0.0719 0.0719 0.2856 0.5705 k 02 0.0004 0.0004 0.9987 0.0004 G 03 0.0004 0.0004 0.0004 0.9987 T 04 0.0004 0.9987 0.0004 0.0004 C 05 0.0004 0.0004 0.9987 0.0004 G 06 0.0004 0.0004 0.9987 0.0004 G 07 0.0004 0.2174 0.0004 0.7817 T 08 0.1180 0.0006 0.7048 0.1766 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.8.141.1:M0075_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0100010458/M0076_1.02/CISBP XX ID 0100010458:M0076_1.02:CISBP XX NA 0100010458 XX DE 0100010458 XX OS Ostreococcus tauri XX BF 10455; XX P0 A C G T 01 0.1843 0.6049 0.1317 0.0791 c 02 0.0002 0.0002 0.9994 0.0002 G 03 0.0002 0.9210 0.0786 0.0002 C 04 0.0002 0.9798 0.0198 0.0002 C 05 0.0002 0.0002 0.9994 0.0002 G 06 0.0198 0.7055 0.2157 0.0590 C 07 0.0002 0.9994 0.0002 0.0002 C 08 0.5802 0.0325 0.3225 0.0648 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0100010458:M0076_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAV1/M0077_1.02/CISBP XX ID RAV1:M0077_1.02:CISBP XX NA RAV1 XX DE RAV1 XX OS Arabidopsis thaliana XX BF 1274; XX P0 A C G T 01 0.2606 0.2335 0.2479 0.2580 w 02 0.2816 0.2129 0.2376 0.2679 w 03 0.2590 0.2142 0.3713 0.1555 r 04 0.2032 0.5255 0.1404 0.1309 c 05 0.5188 0.2068 0.2152 0.0592 a 06 0.6154 0.1124 0.1415 0.1306 a 07 0.0301 0.8680 0.0262 0.0757 C 08 0.8262 0.0013 0.1436 0.0290 A 09 0.1185 0.1405 0.3668 0.3742 k 10 0.3949 0.1654 0.1558 0.2839 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAV1:M0077_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAV1/M0078_1.02/CISBP XX ID RAV1:M0078_1.02:CISBP XX NA RAV1 XX DE RAV1 XX OS Arabidopsis thaliana XX BF 1274; XX P0 A C G T 01 0.2847 0.1696 0.2771 0.2686 d 02 0.0894 0.7319 0.0894 0.0894 C 03 0.9139 0.0002 0.0002 0.0858 A 04 0.0858 0.8221 0.0920 0.0002 C 05 0.1715 0.7363 0.0002 0.0920 C 06 0.0920 0.0002 0.0002 0.9077 T 07 0.1715 0.0002 0.7363 0.0920 G 08 0.9138 0.0859 0.0002 0.0002 A 09 0.4735 0.1755 0.0805 0.2705 w 10 0.3402 0.1608 0.1608 0.3382 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAV1:M0078_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G51120/M0079_1.02/CISBP XX ID AT1G51120:M0079_1.02:CISBP XX NA AT1G51120 XX DE AT1G51120 XX OS Arabidopsis thaliana XX BF 2587; XX P0 A C G T 01 0.2342 0.2343 0.2200 0.3115 t 02 0.2472 0.3456 0.1365 0.2707 y 03 0.3816 0.1952 0.1392 0.2840 w 04 0.4667 0.1306 0.2005 0.2022 a 05 0.1248 0.4549 0.1226 0.2977 y 06 0.2977 0.1226 0.4549 0.1248 r 07 0.2022 0.2005 0.1306 0.4667 t 08 0.2840 0.1392 0.1952 0.3816 w 09 0.2707 0.1365 0.3456 0.2472 r 10 0.3115 0.2200 0.2343 0.2342 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G51120:M0079_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EDF3/M0080_1.02/CISBP XX ID EDF3:M0080_1.02:CISBP XX NA EDF3 XX DE EDF3 XX OS Arabidopsis thaliana XX BF 5583; XX P0 A C G T 01 0.2516 0.2101 0.3946 0.1437 r 02 0.2057 0.5319 0.1299 0.1325 c 03 0.5194 0.1911 0.2265 0.0630 a 04 0.6470 0.0978 0.1206 0.1346 a 05 0.0402 0.8663 0.0329 0.0606 C 06 0.8126 0.0006 0.1384 0.0484 A 07 0.1109 0.1251 0.3610 0.4030 k 08 0.3939 0.1735 0.1493 0.2832 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EDF3:M0080_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EDF3/M0081_1.02/CISBP XX ID EDF3:M0081_1.02:CISBP XX NA EDF3 XX DE EDF3 XX OS Arabidopsis thaliana XX BF 5583; XX P0 A C G T 01 0.4276 0.0014 0.5696 0.0014 r 02 0.0011 0.9967 0.0011 0.0011 C 03 0.9967 0.0011 0.0011 0.0011 A 04 0.9967 0.0011 0.0011 0.0011 A 05 0.0011 0.9967 0.0011 0.0011 C 06 0.9967 0.0011 0.0011 0.0011 A 07 0.0011 0.0011 0.3330 0.6648 k 08 0.8537 0.0014 0.0014 0.1435 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EDF3:M0081_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HMGA/M0118_1.02/CISBP XX ID HMGA:M0118_1.02:CISBP XX NA HMGA XX DE HMGA XX OS Arabidopsis thaliana XX BF 10482; XX P0 A C G T 01 0.2416 0.2670 0.2617 0.2298 s 02 0.2094 0.3062 0.2507 0.2337 s 03 0.3452 0.1820 0.3031 0.1697 r 04 0.3297 0.1792 0.2517 0.2394 r 05 0.4113 0.0429 0.2022 0.3436 w 06 0.7105 0.0477 0.0005 0.2413 A 07 0.8868 0.0009 0.0450 0.0672 A 08 0.4547 0.0098 0.0381 0.4975 w 09 0.2126 0.1775 0.0974 0.5125 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HMGA:M0118_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G17950/M0119_1.02/CISBP XX ID AT4G17950:M0119_1.02:CISBP XX NA AT4G17950 XX DE AT4G17950 XX OS Arabidopsis thaliana XX BF 10483; XX P0 A C G T 01 0.2481 0.1528 0.2482 0.3508 t 02 0.8320 0.0243 0.0243 0.1195 A 03 0.2930 0.0002 0.0002 0.7066 W 04 0.7019 0.0002 0.0002 0.2976 W 05 0.0002 0.0002 0.0002 0.9993 T 06 0.8025 0.0002 0.0002 0.1970 A 07 0.6870 0.0002 0.0002 0.3125 W 08 0.2976 0.0002 0.0002 0.7020 W 09 0.2131 0.0974 0.0974 0.5921 t 10 0.3221 0.2260 0.2260 0.2260 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G17950:M0119_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BRADI3G55950/M0120_1.02/CISBP XX ID BRADI3G55950:M0120_1.02:CISBP XX NA BRADI3G55950 XX DE BRADI3G55950 XX OS Brachypodium distachyon XX BF 10484; XX P0 A C G T 01 0.2725 0.2490 0.2369 0.2417 a 02 0.2620 0.2754 0.2371 0.2255 m 03 0.2384 0.2408 0.2941 0.2268 g 04 0.2863 0.2252 0.2565 0.2321 r 05 0.5948 0.0086 0.3432 0.0534 r 06 0.3500 0.2166 0.0144 0.4190 w 07 0.3949 0.0926 0.1622 0.3503 w 08 0.3791 0.1153 0.1921 0.3135 w 09 0.3554 0.1837 0.1950 0.2659 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BRADI3G55950:M0120_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BRADI5G22430/M0121_1.02/CISBP XX ID BRADI5G22430:M0121_1.02:CISBP XX NA BRADI5G22430 XX DE BRADI5G22430 XX OS Brachypodium distachyon XX BF 10485; XX P0 A C G T 01 0.3745 0.1378 0.3783 0.1095 r 02 0.2262 0.2763 0.2500 0.2475 s 03 0.6068 0.0567 0.2300 0.1065 a 04 0.4286 0.1111 0.2004 0.2599 w 05 0.4759 0.0468 0.2055 0.2718 w 06 0.4000 0.0996 0.1594 0.3409 w 07 0.3374 0.2026 0.1157 0.3442 w 08 0.5465 0.0725 0.2244 0.1566 a 09 0.4626 0.0407 0.3195 0.1771 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BRADI5G22430:M0121_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GSVIVG00033765001/M0136_1.02/CISBP XX ID GSVIVG00033765001:M0136_1.02:CISBP XX NA GSVIVG00033765001 XX DE GSVIVG00033765001 XX OS Vitis vinifera XX BF 10500; XX P0 A C G T 01 0.4331 0.0799 0.2903 0.1966 r 02 0.0891 0.4878 0.1499 0.2731 y 03 0.3800 0.1499 0.2678 0.2024 r 04 0.3085 0.1217 0.3882 0.1816 r 05 0.3160 0.0887 0.3492 0.2461 r 06 0.4398 0.0140 0.1861 0.3601 w 07 0.4186 0.0820 0.1862 0.3132 w 08 0.4007 0.0949 0.1893 0.3152 w 09 0.3417 0.1220 0.2481 0.2883 w 10 0.3382 0.1520 0.2383 0.2714 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GSVIVG00033765001:M0136_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g57820/M0137_1.02/CISBP XX ID LOC_Os02g57820:M0137_1.02:CISBP XX NA LOC_Os02g57820 XX DE LOC_Os02g57820 XX OS Oryza sativa XX BF 10501; XX P0 A C G T 01 0.4126 0.1817 0.2049 0.2008 a 02 0.3839 0.1515 0.1831 0.2815 w 03 0.4111 0.0429 0.1922 0.3538 w 04 0.4425 0.1159 0.0531 0.3885 w 05 0.8059 0.0018 0.0776 0.1147 A 06 0.5087 0.0012 0.0695 0.4206 w 07 0.3407 0.0760 0.0648 0.5185 w 08 0.3105 0.1941 0.1452 0.3501 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g57820:M0137_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Medtr8g106590.1/M0145_1.02/CISBP XX ID Medtr8g106590.1:M0145_1.02:CISBP XX NA Medtr8g106590.1 XX DE Medtr8g106590.1 XX OS Medicago truncatula XX BF 10507; XX P0 A C G T 01 0.8391 0.0004 0.1202 0.0403 A 02 0.8816 0.0003 0.0003 0.1178 A 03 0.8327 0.0003 0.0003 0.1668 A 04 0.6940 0.0003 0.0003 0.3055 W 05 0.1668 0.0003 0.0003 0.8327 T 06 0.8327 0.0003 0.0003 0.1668 A 07 0.7641 0.0297 0.0003 0.2059 A 08 0.1853 0.0374 0.0004 0.7770 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Medtr8g106590.1:M0145_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LEC2/M0146_1.02/CISBP XX ID LEC2:M0146_1.02:CISBP XX NA LEC2 XX DE LEC2 XX OS Arabidopsis thaliana XX BF 9908; XX P0 A C G T 01 0.6612 0.3322 0.0033 0.0033 m 02 0.0025 0.0025 0.0025 0.9926 T 03 0.0025 0.0025 0.9926 0.0025 G 04 0.0025 0.9926 0.0025 0.0025 C 05 0.9926 0.0025 0.0025 0.0025 A 06 0.0025 0.0025 0.0025 0.9926 T 07 0.0025 0.0025 0.9926 0.0025 G 08 0.0033 0.9901 0.0033 0.0033 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LEC2:M0146_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARF8/M0147_1.02/CISBP XX ID ARF8:M0147_1.02:CISBP XX NA ARF8 XX DE ARF8 XX OS Arabidopsis thaliana XX BF 10508; XX P0 A C G T 01 0.2703 0.2326 0.2043 0.2928 w 02 0.2250 0.2588 0.1063 0.4099 y 03 0.0040 0.0000 0.0899 0.9061 T 04 0.0382 0.0014 0.8999 0.0605 G 05 0.0001 0.0129 0.0002 0.9868 T 06 0.0536 0.8633 0.0016 0.0815 C 07 0.0611 0.0274 0.7980 0.1135 G 08 0.1214 0.1382 0.6513 0.0890 g 09 0.2278 0.3365 0.2167 0.2189 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARF8:M0147_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK18474.1/M0149_1.02/CISBP XX ID PK18474.1:M0149_1.02:CISBP XX NA PK18474.1 XX DE PK18474.1 XX OS Cannabis sativa XX BF 10511; XX P0 A C G T 01 0.2393 0.5434 0.1300 0.0872 c 02 0.6189 0.0838 0.1165 0.1809 a 03 0.0750 0.7255 0.0037 0.1958 C 04 0.1883 0.0002 0.7712 0.0404 G 05 0.0134 0.1340 0.0001 0.8525 T 06 0.1652 0.0059 0.7630 0.0658 G 07 0.1440 0.4412 0.2105 0.2043 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK18474.1:M0149_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G01260/M0150_1.02/CISBP XX ID AT1G01260:M0150_1.02:CISBP XX NA AT1G01260 XX DE AT1G01260 XX OS Arabidopsis thaliana XX BF 10512; XX P0 A C G T 01 0.0560 0.2777 0.4440 0.2223 s 02 0.0004 0.9988 0.0004 0.0004 C 03 0.9988 0.0004 0.0004 0.0004 A 04 0.0004 0.9988 0.0004 0.0004 C 05 0.0004 0.0004 0.9988 0.0004 G 06 0.0004 0.0004 0.0004 0.9988 T 07 0.0004 0.0004 0.9988 0.0004 G 08 0.1336 0.0672 0.2666 0.5326 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G01260:M0150_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC POC1/M0151_1.02/CISBP XX ID POC1:M0151_1.02:CISBP XX NA POC1 XX DE POC1 XX OS Arabidopsis thaliana XX BF 2964; XX P0 A C G T 01 0.1778 0.5450 0.1441 0.1331 c 02 0.7385 0.0001 0.1664 0.0951 A 03 0.0003 0.7073 0.0048 0.2876 Y 04 0.0019 0.0001 0.8801 0.1179 G 05 0.0007 0.0046 0.0001 0.9946 T 06 0.0167 0.0065 0.9756 0.0013 G 07 0.2186 0.2981 0.3533 0.1300 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=POC1:M0151_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYC2/M0152_1.02/CISBP XX ID MYC2:M0152_1.02:CISBP XX NA MYC2 XX DE MYC2 XX OS Arabidopsis thaliana XX BF 7517; XX P0 A C G T 01 0.2665 0.2767 0.2097 0.2471 m 02 0.2596 0.1983 0.3652 0.1769 r 03 0.1158 0.8532 0.0035 0.0275 C 04 0.8533 0.0122 0.0737 0.0608 A 05 0.0140 0.8555 0.0000 0.1305 C 06 0.1305 0.0000 0.8555 0.0140 G 07 0.0608 0.0737 0.0122 0.8533 T 08 0.0275 0.0035 0.8532 0.1158 G 09 0.1769 0.3652 0.1983 0.2596 y 10 0.2471 0.2097 0.2767 0.2665 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYC2:M0152_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ZCW32/M0153_1.02/CISBP XX ID ZCW32:M0153_1.02:CISBP XX NA ZCW32 XX DE ZCW32 XX OS Arabidopsis thaliana XX BF 10513; XX P0 A C G T 01 0.2325 0.2702 0.2869 0.2104 s 02 0.2205 0.3006 0.2562 0.2227 s 03 0.1999 0.5274 0.1275 0.1452 c 04 0.6857 0.1057 0.1371 0.0716 A 05 0.0161 0.7554 0.0403 0.1882 C 06 0.1600 0.0011 0.8329 0.0060 G 07 0.0220 0.0401 0.0033 0.9347 T 08 0.0137 0.0375 0.9287 0.0202 G 09 0.1925 0.3438 0.2573 0.2065 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ZCW32:M0153_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM2/M0154_1.02/CISBP XX ID BIM2:M0154_1.02:CISBP XX NA BIM2 XX DE BIM2 XX OS Arabidopsis thaliana XX BF 10514; XX P0 A C G T 01 0.2442 0.2605 0.2901 0.2052 s 02 0.1673 0.1428 0.3727 0.3172 k 03 0.0530 0.8972 0.0008 0.0490 C 04 0.9624 0.0000 0.0236 0.0140 A 05 0.0222 0.8854 0.0000 0.0924 C 06 0.0924 0.0000 0.8854 0.0222 G 07 0.0140 0.0236 0.0000 0.9624 T 08 0.0490 0.0008 0.8972 0.0530 G 09 0.3172 0.3727 0.1428 0.1673 m 10 0.2052 0.2901 0.2605 0.2442 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM2:M0154_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G18300/M0155_1.02/CISBP XX ID AT2G18300:M0155_1.02:CISBP XX NA AT2G18300 XX DE AT2G18300 XX OS Arabidopsis thaliana XX BF 10515; XX P0 A C G T 01 0.2289 0.3132 0.2289 0.2289 c 02 0.2289 0.2289 0.3132 0.2289 g 03 0.1323 0.2397 0.3154 0.3125 k 04 0.0241 0.1057 0.7623 0.1079 G 05 0.0002 0.9995 0.0002 0.0002 C 06 0.9995 0.0002 0.0002 0.0002 A 07 0.0002 0.9044 0.0002 0.0953 C 08 0.0002 0.0002 0.9995 0.0002 G 09 0.0212 0.0212 0.0212 0.9363 T 10 0.0212 0.0212 0.9363 0.0212 G 11 0.2016 0.4853 0.1953 0.1178 c 12 0.2260 0.2260 0.2260 0.3219 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G18300:M0155_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PIL5/M0156_1.02/CISBP XX ID PIL5:M0156_1.02:CISBP XX NA PIL5 XX DE PIL5 XX OS Arabidopsis thaliana XX BF 3877; XX P0 A C G T 01 0.2878 0.2198 0.2956 0.1968 r 02 0.1437 0.2754 0.2792 0.3017 b 03 0.0207 0.9403 0.0144 0.0245 C 04 0.9566 0.0000 0.0267 0.0167 A 05 0.0016 0.9078 0.0000 0.0905 C 06 0.0905 0.0000 0.9078 0.0016 G 07 0.0167 0.0267 0.0000 0.9566 T 08 0.0245 0.0144 0.9403 0.0207 G 09 0.3017 0.2792 0.2754 0.1437 v 10 0.1968 0.2956 0.2198 0.2878 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PIL5:M0156_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bHLH34/M0157_1.02/CISBP XX ID bHLH34:M0157_1.02:CISBP XX NA bHLH34 XX DE bHLH34 XX OS Arabidopsis thaliana XX BF 10516; XX P0 A C G T 01 0.1540 0.0388 0.6532 0.1540 g 02 0.0003 0.9991 0.0003 0.0003 C 03 0.7267 0.0003 0.2424 0.0306 A 04 0.0003 0.8478 0.0003 0.1516 C 05 0.0003 0.0003 0.9991 0.0003 G 06 0.0003 0.0003 0.0003 0.9991 T 07 0.0003 0.0003 0.9991 0.0003 G 08 0.0955 0.1431 0.4758 0.2856 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bHLH34:M0157_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC UNE10/M0158_1.02/CISBP XX ID UNE10:M0158_1.02:CISBP XX NA UNE10 XX DE UNE10 XX OS Arabidopsis thaliana XX BF 10517; XX P0 A C G T 01 0.2144 0.4993 0.0719 0.2144 c 02 0.0005 0.9986 0.0005 0.0005 C 03 0.9986 0.0005 0.0005 0.0005 A 04 0.0005 0.9986 0.0005 0.0005 C 05 0.0005 0.0005 0.9986 0.0005 G 06 0.0005 0.0005 0.0005 0.9986 T 07 0.0005 0.0005 0.9986 0.0005 G 08 0.2666 0.5326 0.0672 0.1336 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=UNE10:M0158_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bHLH104/M0159_1.02/CISBP XX ID bHLH104:M0159_1.02:CISBP XX NA bHLH104 XX DE bHLH104 XX OS Arabidopsis thaliana XX BF 10518; XX P0 A C G T 01 0.1297 0.0263 0.8220 0.0220 G 02 0.0152 0.0742 0.8660 0.0446 G 03 0.0060 0.9940 0.0000 0.0000 C 04 0.9961 0.0000 0.0039 0.0000 A 05 0.0000 0.9995 0.0000 0.0005 C 06 0.0005 0.0000 0.9995 0.0000 G 07 0.0000 0.0039 0.0000 0.9961 T 08 0.0000 0.0000 0.9940 0.0060 G 09 0.0446 0.8660 0.0742 0.0152 C 10 0.0220 0.8220 0.0263 0.1297 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bHLH104:M0159_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYC4/M0160_1.02/CISBP XX ID MYC4:M0160_1.02:CISBP XX NA MYC4 XX DE MYC4 XX OS Arabidopsis thaliana XX BF 9777; XX P0 A C G T 01 0.2772 0.2831 0.1958 0.2439 m 02 0.2626 0.1916 0.3572 0.1887 r 03 0.1287 0.8285 0.0055 0.0373 C 04 0.8618 0.0000 0.0701 0.0681 A 05 0.0289 0.8238 0.0000 0.1472 C 06 0.1472 0.0000 0.8238 0.0289 G 07 0.0681 0.0701 0.0000 0.8618 T 08 0.0373 0.0055 0.8285 0.1287 G 09 0.1887 0.3572 0.1916 0.2626 y 10 0.2439 0.1958 0.2831 0.2772 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYC4:M0160_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BEE2/M0161_1.02/CISBP XX ID BEE2:M0161_1.02:CISBP XX NA BEE2 XX DE BEE2 XX OS Arabidopsis thaliana XX BF 10519; XX P0 A C G T 01 0.2561 0.2525 0.2363 0.2551 h 02 0.2112 0.2288 0.3420 0.2179 g 03 0.1362 0.7218 0.0377 0.1043 C 04 0.8929 0.0000 0.0332 0.0739 A 05 0.0226 0.8202 0.0000 0.1571 C 06 0.1571 0.0000 0.8202 0.0226 G 07 0.0739 0.0332 0.0000 0.8929 T 08 0.1043 0.0377 0.7218 0.1362 G 09 0.2179 0.3420 0.2288 0.2112 c 10 0.2551 0.2363 0.2525 0.2561 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BEE2:M0161_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPT/M0162_1.02/CISBP XX ID SPT:M0162_1.02:CISBP XX NA SPT XX DE SPT XX OS Arabidopsis thaliana XX BF 10520; XX P0 A C G T 01 0.2017 0.4270 0.2078 0.1635 c 02 0.0471 0.5682 0.2553 0.1293 s 03 0.0001 0.9610 0.0002 0.0388 C 04 0.8847 0.0003 0.0990 0.0160 A 05 0.0092 0.9104 0.0002 0.0801 C 06 0.0878 0.0004 0.9115 0.0003 G 07 0.0003 0.0120 0.0002 0.9876 T 08 0.0844 0.1150 0.7243 0.0763 G 09 0.2207 0.3010 0.2368 0.2415 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPT:M0162_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM1/M0163_1.02/CISBP XX ID BIM1:M0163_1.02:CISBP XX NA BIM1 XX DE BIM1 XX OS Arabidopsis thaliana XX BF 10521; XX P0 A C G T 01 0.2192 0.2497 0.2815 0.2497 g 02 0.1258 0.6549 0.1009 0.1184 c 03 0.5821 0.1011 0.1843 0.1325 a 04 0.0587 0.7663 0.0234 0.1517 C 05 0.1396 0.0621 0.7954 0.0029 G 06 0.0008 0.0232 0.0004 0.9756 T 07 0.0031 0.0015 0.9896 0.0057 G 08 0.3753 0.3012 0.1481 0.1755 m 09 0.1468 0.3435 0.2421 0.2675 y 10 0.2565 0.2617 0.2565 0.2253 v XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM1:M0163_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM3/M0164_1.02/CISBP XX ID BIM3:M0164_1.02:CISBP XX NA BIM3 XX DE BIM3 XX OS Arabidopsis thaliana XX BF 10522; XX P0 A C G T 01 0.2942 0.2027 0.2700 0.2331 r 02 0.1594 0.1650 0.4328 0.2428 g 03 0.0744 0.8214 0.0078 0.0963 C 04 0.9420 0.0000 0.0246 0.0334 A 05 0.0147 0.9184 0.0000 0.0668 C 06 0.0668 0.0000 0.9184 0.0147 G 07 0.0334 0.0246 0.0000 0.9420 T 08 0.0963 0.0078 0.8214 0.0744 G 09 0.2428 0.4328 0.1650 0.1594 c 10 0.2331 0.2700 0.2027 0.2942 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM3:M0164_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYC3/M0165_1.02/CISBP XX ID MYC3:M0165_1.02:CISBP XX NA MYC3 XX DE MYC3 XX OS Arabidopsis thaliana XX BF 9988; XX P0 A C G T 01 0.1922 0.6319 0.0545 0.1214 c 02 0.5802 0.0732 0.1244 0.2222 a 03 0.0375 0.6615 0.0786 0.2224 c 04 0.1827 0.0011 0.7334 0.0829 G 05 0.0090 0.1170 0.0009 0.8732 T 06 0.0899 0.0027 0.7265 0.1809 G 07 0.1718 0.3425 0.2538 0.2319 s 08 0.2299 0.2465 0.2644 0.2592 k 09 0.2506 0.2135 0.2360 0.3000 w 10 0.3025 0.2264 0.2028 0.2683 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYC3:M0165_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G48560/M0166_1.02/CISBP XX ID AT5G48560:M0166_1.02:CISBP XX NA AT5G48560 XX DE AT5G48560 XX OS Arabidopsis thaliana XX BF 10523; XX P0 A C G T 01 0.0096 0.0096 0.9712 0.0096 G 02 0.0096 0.9712 0.0096 0.0096 C 03 0.9712 0.0096 0.0096 0.0096 A 04 0.0096 0.9712 0.0096 0.0096 C 05 0.0096 0.0096 0.9712 0.0096 G 06 0.0096 0.0096 0.0096 0.9712 T 07 0.0096 0.0096 0.9712 0.0096 G 08 0.0096 0.9712 0.0096 0.0096 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G48560:M0166_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ILR3/M0167_1.02/CISBP XX ID ILR3:M0167_1.02:CISBP XX NA ILR3 XX DE ILR3 XX OS Arabidopsis thaliana XX BF 10524; XX P0 A C G T 01 0.2538 0.2046 0.3003 0.2412 r 02 0.2692 0.2278 0.3340 0.1689 r 03 0.1299 0.7963 0.0188 0.0550 C 04 0.6820 0.0850 0.1201 0.1130 A 05 0.0022 0.8650 0.0000 0.1328 C 06 0.1328 0.0000 0.8650 0.0022 G 07 0.1130 0.1201 0.0850 0.6820 T 08 0.0550 0.0188 0.7963 0.1299 G 09 0.1689 0.3340 0.2278 0.2692 y 10 0.2412 0.3003 0.2046 0.2538 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ILR3:M0167_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bhlh112/M0229_1.02/CISBP XX ID bhlh112:M0229_1.02:CISBP XX NA bhlh112 XX DE bhlh112 XX OS Oryza sativa XX BF 10614; XX P0 A C G T 01 0.2211 0.2502 0.3062 0.2225 s 02 0.0001 0.9996 0.0001 0.0001 C 03 0.1770 0.8227 0.0001 0.0001 C 04 0.9996 0.0001 0.0001 0.0001 A 05 0.0001 0.9996 0.0001 0.0001 C 06 0.0001 0.0001 0.0001 0.9996 T 07 0.0001 0.0001 0.0001 0.9996 T 08 0.0001 0.0001 0.9996 0.0001 G 09 0.2178 0.3430 0.2166 0.2225 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bhlh112:M0229_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.209.40.1/M0250_1.02/CISBP XX ID e_gw1.209.40.1:M0250_1.02:CISBP XX NA e_gw1.209.40.1 XX DE e_gw1.209.40.1 XX OS Physcomitrella patens XX BF 10630; XX P0 A C G T 01 0.2496 0.2723 0.2225 0.2555 y 02 0.2080 0.2306 0.3921 0.1694 g 03 0.1059 0.8443 0.0123 0.0376 C 04 0.9231 0.0000 0.0104 0.0665 A 05 0.0219 0.9395 0.0000 0.0386 C 06 0.0386 0.0000 0.9395 0.0219 G 07 0.0665 0.0104 0.0000 0.9231 T 08 0.0376 0.0123 0.8443 0.1059 G 09 0.1694 0.3921 0.2306 0.2080 c 10 0.2555 0.2225 0.2723 0.2496 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.209.40.1:M0250_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.scaffold_37000071/M0251_1.02/CISBP XX ID fgenesh1_pg.scaffold_37000071:M0251_1.02:CISBP XX NA fgenesh1_pg.scaffold_37000071 XX DE fgenesh1_pg.scaffold_37000071 XX OS Physcomitrella patens XX BF 10631; XX P0 A C G T 01 0.2637 0.2376 0.3083 0.1904 r 02 0.2097 0.1807 0.2721 0.3375 k 03 0.0694 0.8493 0.0171 0.0643 C 04 0.8062 0.0000 0.1064 0.0874 A 05 0.0546 0.7995 0.0000 0.1459 C 06 0.1459 0.0000 0.7995 0.0546 G 07 0.0874 0.1064 0.0000 0.8062 T 08 0.0643 0.0171 0.8493 0.0694 G 09 0.3375 0.2721 0.1807 0.2097 m 10 0.1904 0.3083 0.2376 0.2637 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.scaffold_37000071:M0251_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.270.82.1/M0252_1.02/CISBP XX ID gw1.270.82.1:M0252_1.02:CISBP XX NA gw1.270.82.1 XX DE gw1.270.82.1 XX OS Physcomitrella patens XX BF 10632; XX P0 A C G T 01 0.1541 0.4609 0.1541 0.2308 c 02 0.0005 0.9984 0.0005 0.0005 C 03 0.9984 0.0005 0.0005 0.0005 A 04 0.0005 0.9984 0.0005 0.0005 C 05 0.0530 0.0005 0.9459 0.0005 G 06 0.0005 0.0005 0.0005 0.9984 T 07 0.0005 0.0005 0.9984 0.0005 G 08 0.1432 0.6417 0.0719 0.1432 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.270.82.1:M0252_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_14.0001000151/M0253_1.02/CISBP XX ID fgenesh1_pg.C_Chr_14.0001000151:M0253_1.02:CISBP XX NA fgenesh1_pg.C_Chr_14.0001000151 XX DE fgenesh1_pg.C_Chr_14.0001000151 XX OS Ostreococcus tauri XX BF 10633; XX P0 A C G T 01 0.2637 0.1616 0.4014 0.1733 r 02 0.2622 0.0798 0.5606 0.0974 r 03 0.1192 0.7659 0.0381 0.0768 C 04 0.2702 0.0562 0.5721 0.1014 r 05 0.0146 0.6341 0.0068 0.3445 y 06 0.0321 0.0358 0.9231 0.0090 G 07 0.0249 0.0853 0.0133 0.8765 T 08 0.0149 0.0050 0.9471 0.0329 G 09 0.0769 0.2996 0.2684 0.3551 b 10 0.1850 0.4037 0.1760 0.2352 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_14.0001000151:M0253_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bZIP68/M0255_1.02/CISBP XX ID bZIP68:M0255_1.02:CISBP XX NA bZIP68 XX DE bZIP68 XX OS Arabidopsis thaliana XX BF 10635; XX P0 A C G T 01 0.2517 0.3363 0.1225 0.2895 h 02 0.1840 0.3319 0.2637 0.2203 s 03 0.6211 0.1305 0.1372 0.1112 a 04 0.0700 0.6506 0.1481 0.1314 c 05 0.1158 0.1627 0.6339 0.0875 g 06 0.0276 0.0584 0.0002 0.9138 T 07 0.0324 0.0001 0.9508 0.0167 G 08 0.0024 0.0734 0.5421 0.3820 k 09 0.2889 0.4763 0.1338 0.1011 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bZIP68:M0255_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATAREB1/M0256_1.02/CISBP XX ID ATAREB1:M0256_1.02:CISBP XX NA ATAREB1 XX DE ATAREB1 XX OS Arabidopsis thaliana XX BF 10636; XX P0 A C G T 01 0.2307 0.3079 0.2307 0.2307 c 02 0.3079 0.2307 0.2307 0.2307 a 03 0.1910 0.2678 0.1910 0.3501 y 04 0.2742 0.1202 0.4034 0.2022 r 05 0.6991 0.1772 0.1028 0.0208 A 06 0.0002 0.8403 0.0002 0.1593 C 07 0.9994 0.0002 0.0002 0.0002 A 08 0.0002 0.9175 0.0002 0.0822 C 09 0.0195 0.0195 0.9416 0.0195 G 10 0.0195 0.0195 0.0195 0.9416 T 11 0.2180 0.0592 0.6636 0.0592 g 12 0.2125 0.1300 0.2869 0.3706 k 13 0.2294 0.2294 0.2294 0.3119 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATAREB1:M0256_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABF1/M0257_1.02/CISBP XX ID ABF1:M0257_1.02:CISBP XX NA ABF1 XX DE ABF1 XX OS Arabidopsis thaliana XX BF 3856; XX P0 A C G T 01 0.2102 0.2102 0.3694 0.2102 g 02 0.2599 0.1659 0.3263 0.2479 r 03 0.6752 0.1797 0.0726 0.0726 a 04 0.1619 0.7436 0.0002 0.0943 C 05 0.7335 0.0799 0.1044 0.0823 A 06 0.0002 0.9052 0.0002 0.0943 C 07 0.1763 0.0002 0.8232 0.0002 G 08 0.0002 0.1044 0.0002 0.8952 T 09 0.1197 0.0400 0.7062 0.1341 G 10 0.1640 0.1885 0.3974 0.2501 k 11 0.1777 0.2833 0.2818 0.2573 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABF1:M0257_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G77920/M0259_1.02/CISBP XX ID AT1G77920:M0259_1.02:CISBP XX NA AT1G77920 XX DE AT1G77920 XX OS Arabidopsis thaliana XX BF 10637; XX P0 A C G T 01 0.1875 0.2073 0.3417 0.2635 k 02 0.3548 0.1610 0.4838 0.0004 r 03 0.0100 0.0048 0.0049 0.9803 T 04 0.0771 0.0042 0.8670 0.0517 G 05 0.9235 0.0127 0.0012 0.0627 A 06 0.0049 0.8598 0.0200 0.1152 C 07 0.0375 0.0025 0.8079 0.1521 G 08 0.0504 0.1622 0.0456 0.7418 T 09 0.2606 0.5743 0.0968 0.0682 m 10 0.5990 0.0631 0.1197 0.2182 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G77920:M0259_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G21230/M0260_1.02/CISBP XX ID AT2G21230:M0260_1.02:CISBP XX NA AT2G21230 XX DE AT2G21230 XX OS Arabidopsis thaliana XX BF 10638; XX P0 A C G T 01 0.1269 0.2881 0.1148 0.4702 y 02 0.0926 0.0000 0.7191 0.1883 G 03 0.5708 0.4271 0.0022 0.0000 m 04 0.0080 0.9717 0.0000 0.0203 C 05 0.9363 0.0359 0.0034 0.0243 A 06 0.2134 0.0098 0.7675 0.0093 G 07 0.0242 0.6816 0.0763 0.2180 C 08 0.0140 0.0800 0.0332 0.8728 T 09 0.1884 0.0774 0.6642 0.0700 g 10 0.0874 0.0604 0.3879 0.4644 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G21230:M0260_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABI5/M0261_1.02/CISBP XX ID ABI5:M0261_1.02:CISBP XX NA ABI5 XX DE ABI5 XX OS Arabidopsis thaliana XX BF 3091; XX P0 A C G T 01 0.1806 0.2568 0.2571 0.3055 b 02 0.0866 0.0866 0.6602 0.1667 g 03 0.6085 0.3135 0.0002 0.0779 m 04 0.0002 0.9218 0.0779 0.0002 C 05 0.9995 0.0002 0.0002 0.0002 A 06 0.0002 0.9995 0.0002 0.0002 C 07 0.0002 0.0002 0.9995 0.0002 G 08 0.0002 0.0002 0.0002 0.9995 T 09 0.1518 0.0695 0.7091 0.0695 G 10 0.1636 0.1636 0.3368 0.3360 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABI5:M0261_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G40620/M0262_1.02/CISBP XX ID AT2G40620:M0262_1.02:CISBP XX NA AT2G40620 XX DE AT2G40620 XX OS Arabidopsis thaliana XX BF 10639; XX P0 A C G T 01 0.2052 0.2201 0.1857 0.3891 t 02 0.1616 0.0244 0.5366 0.2773 k 03 0.5556 0.3994 0.0095 0.0355 m 04 0.0613 0.7935 0.0059 0.1393 C 05 0.9396 0.0000 0.0038 0.0566 A 06 0.2363 0.0719 0.5813 0.1105 g 07 0.1404 0.5204 0.1296 0.2095 c 08 0.1746 0.2028 0.1136 0.5090 t 09 0.2322 0.1572 0.3829 0.2276 g 10 0.2202 0.1258 0.3319 0.3221 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G40620:M0262_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BZIP17/M0263_1.02/CISBP XX ID BZIP17:M0263_1.02:CISBP XX NA BZIP17 XX DE BZIP17 XX OS Arabidopsis thaliana XX BF 10640; XX P0 A C G T 01 0.2561 0.2055 0.3223 0.2161 r 02 0.3462 0.1826 0.3010 0.1702 r 03 0.1811 0.2234 0.0984 0.4972 t 04 0.1192 0.1927 0.5084 0.1797 g 05 0.7831 0.0526 0.0817 0.0825 A 06 0.0090 0.8058 0.0073 0.1780 C 07 0.1769 0.0005 0.7772 0.0454 G 08 0.1353 0.1900 0.0311 0.6436 t 09 0.2366 0.1052 0.5371 0.1211 g 10 0.1522 0.1448 0.3935 0.3095 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BZIP17:M0263_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GBF3/M0264_1.02/CISBP XX ID GBF3:M0264_1.02:CISBP XX NA GBF3 XX DE GBF3 XX OS Arabidopsis thaliana XX BF 10641; XX P0 A C G T 01 0.1999 0.3199 0.1086 0.3716 y 02 0.1023 0.2699 0.3296 0.2982 b 03 0.7277 0.0873 0.1035 0.0814 A 04 0.0426 0.6525 0.1692 0.1358 c 05 0.0744 0.1758 0.6581 0.0918 g 06 0.0478 0.0433 0.0128 0.8961 T 07 0.0729 0.0004 0.8876 0.0392 G 08 0.0011 0.0595 0.5420 0.3975 k 09 0.3301 0.4072 0.1425 0.1202 m 10 0.3255 0.2830 0.1859 0.2055 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GBF3:M0264_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA6/M0265_1.02/CISBP XX ID TGA6:M0265_1.02:CISBP XX NA TGA6 XX DE TGA6 XX OS Arabidopsis thaliana XX BF 10642; XX P0 A C G T 01 0.2098 0.2098 0.3295 0.2508 k 02 0.4281 0.2108 0.2092 0.1519 a 03 0.0000 0.0000 0.0000 0.9999 T 04 0.0000 0.0000 0.9999 0.0000 G 05 0.9999 0.0000 0.0000 0.0000 A 06 0.0000 0.9999 0.0000 0.0000 C 07 0.0000 0.0000 0.9999 0.0000 G 08 0.0000 0.0000 0.0000 0.9999 T 09 0.2772 0.5990 0.0837 0.0402 m 10 0.6655 0.0981 0.1384 0.0981 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA6:M0265_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GBF2/M0266_1.02/CISBP XX ID GBF2:M0266_1.02:CISBP XX NA GBF2 XX DE GBF2 XX OS Arabidopsis thaliana XX BF 496; XX P0 A C G T 01 0.1221 0.1716 0.4262 0.2801 k 02 0.3733 0.5039 0.1080 0.0148 m 03 0.0258 0.8795 0.0029 0.0918 C 04 0.9392 0.0016 0.0565 0.0027 A 05 0.0851 0.5920 0.2200 0.1029 c 06 0.1350 0.2014 0.5931 0.0705 g 07 0.1421 0.1825 0.1435 0.5319 t 08 0.2472 0.2815 0.2901 0.1813 s 09 0.3091 0.1417 0.3520 0.1971 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GBF2:M0266_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABF3/M0267_1.02/CISBP XX ID ABF3:M0267_1.02:CISBP XX NA ABF3 XX DE ABF3 XX OS Arabidopsis thaliana XX BF 10643; XX P0 A C G T 01 0.9712 0.0096 0.0096 0.0096 A 02 0.0096 0.9712 0.0096 0.0096 C 03 0.9712 0.0096 0.0096 0.0096 A 04 0.0096 0.9712 0.0096 0.0096 C 05 0.0096 0.0096 0.9712 0.0096 G 06 0.0096 0.0096 0.0096 0.9712 T 07 0.0096 0.0096 0.9712 0.0096 G 08 0.0096 0.0096 0.0096 0.9712 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABF3:M0267_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GBF1/M0268_1.02/CISBP XX ID GBF1:M0268_1.02:CISBP XX NA GBF1 XX DE GBF1 XX OS Arabidopsis thaliana XX BF 10644; XX P0 A C G T 01 0.1950 0.3313 0.0732 0.4006 y 02 0.0626 0.3193 0.4019 0.2162 s 03 0.8630 0.0359 0.0541 0.0470 A 04 0.0160 0.7831 0.1114 0.0894 C 05 0.0579 0.1355 0.7567 0.0498 G 06 0.0206 0.0262 0.0045 0.9487 T 07 0.0457 0.0000 0.9543 0.0000 G 08 0.0001 0.0516 0.6101 0.3382 k 09 0.2797 0.5357 0.1029 0.0817 m 10 0.3620 0.2935 0.1517 0.1928 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GBF1:M0268_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA2/M0269_1.02/CISBP XX ID TGA2:M0269_1.02:CISBP XX NA TGA2 XX DE TGA2 XX OS Arabidopsis thaliana XX BF 3636; XX P0 A C G T 01 0.2017 0.2274 0.3195 0.2513 k 02 0.2692 0.1955 0.4620 0.0734 r 03 0.0020 0.0348 0.0008 0.9624 T 04 0.0208 0.0915 0.8505 0.0372 G 05 0.8612 0.0017 0.1109 0.0263 A 06 0.0010 0.7759 0.0298 0.1933 C 07 0.1185 0.0436 0.7846 0.0533 G 08 0.1117 0.1284 0.0844 0.6755 t 09 0.3291 0.3674 0.1570 0.1464 m 10 0.4967 0.1704 0.1921 0.1409 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA2:M0269_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OBF5/M0270_1.02/CISBP XX ID OBF5:M0270_1.02:CISBP XX NA OBF5 XX DE OBF5 XX OS Arabidopsis thaliana XX BF 10645; XX P0 A C G T 01 0.4443 0.2444 0.2889 0.0224 r 02 0.0002 0.0002 0.0002 0.9995 T 03 0.0002 0.0002 0.9058 0.0938 G 04 0.9839 0.0002 0.0158 0.0002 A 05 0.0002 0.9995 0.0002 0.0002 C 06 0.0160 0.0002 0.9837 0.0002 G 07 0.0002 0.0982 0.0002 0.9014 T 08 0.3528 0.2941 0.2059 0.1472 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OBF5:M0270_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA4/M0271_1.02/CISBP XX ID TGA4:M0271_1.02:CISBP XX NA TGA4 XX DE TGA4 XX OS Arabidopsis thaliana XX BF 10646; XX P0 A C G T 01 0.1581 0.0940 0.6159 0.1320 g 02 0.2674 0.4873 0.1793 0.0660 m 03 0.0535 0.0021 0.0016 0.9429 T 04 0.1220 0.0006 0.6415 0.2360 g 05 0.9524 0.0052 0.0258 0.0166 A 06 0.0854 0.8520 0.0065 0.0561 C 07 0.1793 0.0072 0.7954 0.0182 G 08 0.1322 0.1258 0.0740 0.6680 t 09 0.3588 0.3247 0.1818 0.1347 m 10 0.4138 0.0803 0.3597 0.1462 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA4:M0271_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtbZIP63/M0272_1.02/CISBP XX ID AtbZIP63:M0272_1.02:CISBP XX NA AtbZIP63 XX DE AtbZIP63 XX OS Arabidopsis thaliana XX BF 10647; XX P0 A C G T 01 0.2292 0.2292 0.2292 0.3125 t 02 0.2033 0.2033 0.3900 0.2033 g 03 0.1877 0.4370 0.1877 0.1877 c 04 0.1663 0.1481 0.0209 0.6647 t 05 0.0000 0.3561 0.6438 0.0000 s 06 0.9999 0.0000 0.0000 0.0000 A 07 0.0000 0.9999 0.0000 0.0000 C 08 0.0000 0.0000 0.9999 0.0000 G 09 0.0209 0.0209 0.0209 0.9374 T 10 0.0467 0.1232 0.7834 0.0467 G 11 0.1388 0.0624 0.5976 0.2012 g 12 0.2291 0.3127 0.2291 0.2291 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtbZIP63:M0272_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA1/M0273_1.02/CISBP XX ID TGA1:M0273_1.02:CISBP XX NA TGA1 XX DE TGA1 XX OS Arabidopsis thaliana XX BF 10648; XX P0 A C G T 01 0.2089 0.2131 0.3584 0.2196 g 02 0.3222 0.2974 0.3222 0.0583 v 03 0.0298 0.0225 0.0176 0.9301 T 04 0.0403 0.0522 0.7538 0.1537 G 05 0.9029 0.0033 0.0239 0.0698 A 06 0.0186 0.7520 0.0182 0.2112 C 07 0.1288 0.0973 0.6980 0.0758 G 08 0.1661 0.1818 0.1059 0.5461 t 09 0.2885 0.3454 0.1840 0.1821 m 10 0.3770 0.1835 0.2175 0.2219 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA1:M0273_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g49560/M0327_1.02/CISBP XX ID LOC_Os02g49560:M0327_1.02:CISBP XX NA LOC_Os02g49560 XX DE LOC_Os02g49560 XX OS Oryza sativa XX BF 10692; XX P0 A C G T 01 0.2243 0.2243 0.2243 0.3271 t 02 0.1796 0.1796 0.3936 0.2473 g 03 0.2000 0.6426 0.0424 0.1150 c 04 0.0001 0.9271 0.0727 0.0001 C 05 0.9998 0.0001 0.0001 0.0001 A 06 0.0001 0.9998 0.0001 0.0001 C 07 0.0001 0.0001 0.9998 0.0001 G 08 0.0001 0.0001 0.0001 0.9998 T 09 0.0258 0.2224 0.7261 0.0258 G 10 0.2671 0.0705 0.1876 0.4748 w 11 0.2077 0.2926 0.2077 0.2919 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g49560:M0327_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os05g36160/M0329_1.02/CISBP XX ID LOC_Os05g36160:M0329_1.02:CISBP XX NA LOC_Os05g36160 XX DE LOC_Os05g36160 XX OS Oryza sativa XX BF 10693; XX P0 A C G T 01 0.6612 0.3322 0.0033 0.0033 m 02 0.0033 0.9901 0.0033 0.0033 C 03 0.9901 0.0033 0.0033 0.0033 A 04 0.0033 0.9901 0.0033 0.0033 C 05 0.0033 0.0033 0.9901 0.0033 G 06 0.0033 0.0033 0.0033 0.9901 T 07 0.0033 0.0033 0.9901 0.0033 G 08 0.0049 0.0049 0.4951 0.4951 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os05g36160:M0329_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0100010379/M0361_1.02/CISBP XX ID 0100010379:M0361_1.02:CISBP XX NA 0100010379 XX DE 0100010379 XX OS Ostreococcus tauri XX BF 10719; XX P0 A C G T 01 0.3427 0.2016 0.2522 0.2034 r 02 0.2169 0.2476 0.0384 0.4972 t 03 0.1536 0.1621 0.3426 0.3417 k 04 0.7622 0.0386 0.0725 0.1266 A 05 0.0979 0.6623 0.0216 0.2181 c 06 0.2181 0.0216 0.6623 0.0979 g 07 0.1266 0.0725 0.0386 0.7622 T 08 0.3417 0.3426 0.1621 0.1536 m 09 0.4972 0.0384 0.2476 0.2169 a 10 0.2034 0.2522 0.2016 0.3427 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0100010379:M0361_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0300010272/M0362_1.02/CISBP XX ID 0300010272:M0362_1.02:CISBP XX NA 0300010272 XX DE 0300010272 XX OS Ostreococcus tauri XX BF 10720; XX P0 A C G T 01 0.4280 0.1226 0.4153 0.0341 r 02 0.0002 0.0010 0.0007 0.9981 T 03 0.0565 0.0004 0.8572 0.0859 G 04 0.9374 0.0208 0.0017 0.0402 A 05 0.0026 0.8925 0.0009 0.1040 C 06 0.1359 0.0248 0.8061 0.0332 G 07 0.1222 0.1841 0.0638 0.6299 t 08 0.2816 0.3616 0.2522 0.1046 v 09 0.3702 0.1232 0.2268 0.2798 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0300010272:M0362_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0300010311/M0363_1.02/CISBP XX ID 0300010311:M0363_1.02:CISBP XX NA 0300010311 XX DE 0300010311 XX OS Ostreococcus tauri XX BF 10721; XX P0 A C G T 01 0.2879 0.2114 0.2893 0.2114 r 02 0.2283 0.1340 0.0540 0.5837 t 03 0.0310 0.3773 0.5607 0.0310 s 04 0.9998 0.0001 0.0001 0.0001 A 05 0.0001 0.9998 0.0001 0.0001 C 06 0.0001 0.0001 0.9998 0.0001 G 07 0.0001 0.0001 0.0001 0.9998 T 08 0.0001 0.0978 0.9021 0.0001 G 09 0.1364 0.0387 0.5981 0.2268 g 10 0.1961 0.4118 0.1961 0.1961 c 11 0.3428 0.2191 0.2191 0.2191 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0300010311:M0363_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 1500010105/M0364_1.02/CISBP XX ID 1500010105:M0364_1.02:CISBP XX NA 1500010105 XX DE 1500010105 XX OS Ostreococcus tauri XX BF 10722; XX P0 A C G T 01 0.2511 0.2183 0.2389 0.2917 w 02 0.0841 0.4559 0.0636 0.3964 y 03 0.1154 0.0205 0.7869 0.0773 G 04 0.2058 0.7939 0.0001 0.0002 C 05 0.0595 0.9217 0.0004 0.0185 C 06 0.9959 0.0001 0.0034 0.0005 A 07 0.0343 0.9024 0.0625 0.0008 C 08 0.0405 0.1037 0.8382 0.0177 G 09 0.0086 0.0563 0.0001 0.9350 T 10 0.0518 0.0916 0.7940 0.0626 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=1500010105:M0364_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_Chr_04.00010098/M0365_1.02/CISBP XX ID estExt_fgenesh1_pg.C_Chr_04.00010098:M0365_1.02:CISBP XX NA estExt_fgenesh1_pg.C_Chr_04.00010098 XX DE estExt_fgenesh1_pg.C_Chr_04.00010098 XX OS Ostreococcus tauri XX BF 10723; XX P0 A C G T 01 0.1453 0.2569 0.1250 0.4728 y 02 0.1025 0.0438 0.6017 0.2521 k 03 0.3381 0.6412 0.0091 0.0116 m 04 0.0131 0.9534 0.0001 0.0334 C 05 0.9885 0.0000 0.0002 0.0112 A 06 0.2128 0.1515 0.5961 0.0397 g 07 0.1858 0.3894 0.2772 0.1476 s 08 0.1569 0.2976 0.3160 0.2295 s 09 0.1779 0.2450 0.1692 0.4079 t 10 0.2246 0.1680 0.3666 0.2408 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_Chr_04.00010098:M0365_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_07.0001000033/M0366_1.02/CISBP XX ID fgenesh1_pg.C_Chr_07.0001000033:M0366_1.02:CISBP XX NA fgenesh1_pg.C_Chr_07.0001000033 XX DE fgenesh1_pg.C_Chr_07.0001000033 XX OS Ostreococcus tauri XX BF 10724; XX P0 A C G T 01 0.3200 0.2267 0.2267 0.2267 a 02 0.1756 0.1756 0.1756 0.4731 t 03 0.1290 0.1290 0.6131 0.1290 g 04 0.1290 0.6131 0.1290 0.1290 c 05 0.1052 0.2025 0.0001 0.6922 T 06 0.0001 0.3076 0.6922 0.0001 S 07 0.9997 0.0001 0.0001 0.0001 A 08 0.0001 0.9997 0.0001 0.0001 C 09 0.0234 0.0234 0.7348 0.2184 G 10 0.0745 0.1650 0.0745 0.6861 T 11 0.1211 0.1211 0.6366 0.1211 g 12 0.1211 0.1211 0.3228 0.4350 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_07.0001000033:M0366_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ZFP5/M0369_1.02/CISBP XX ID ZFP5:M0369_1.02:CISBP XX NA ZFP5 XX DE ZFP5 XX OS Arabidopsis thaliana XX BF 10727; XX P0 A C G T 01 0.2517 0.2394 0.2443 0.2646 w 02 0.2097 0.2436 0.2665 0.2802 k 03 0.2281 0.2546 0.2471 0.2703 y 04 0.2563 0.1753 0.3069 0.2615 d 05 0.7551 0.0497 0.0888 0.1064 A 06 0.6548 0.0004 0.0650 0.2799 w 07 0.0541 0.5346 0.4000 0.0113 s 08 0.1898 0.2161 0.0678 0.5263 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ZFP5:M0369_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC STZ/M0370_1.02/CISBP XX ID STZ:M0370_1.02:CISBP XX NA STZ XX DE STZ XX OS Arabidopsis thaliana XX BF 10728; XX P0 A C G T 01 0.2313 0.2336 0.3061 0.2290 g 02 0.6761 0.0415 0.0981 0.1843 a 03 0.0758 0.3755 0.5172 0.0314 s 04 0.0676 0.1474 0.0020 0.7830 T 05 0.2754 0.0646 0.5119 0.1481 r 06 0.2961 0.1561 0.2172 0.3306 w 07 0.2790 0.2331 0.2525 0.2354 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=STZ:M0370_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ZFP8/M0371_1.02/CISBP XX ID ZFP8:M0371_1.02:CISBP XX NA ZFP8 XX DE ZFP8 XX OS Arabidopsis thaliana XX BF 10729; XX P0 A C G T 01 0.4582 0.1353 0.1422 0.2643 w 02 0.0372 0.3258 0.5591 0.0780 s 03 0.2657 0.0867 0.0008 0.6469 w 04 0.1450 0.1032 0.0953 0.6565 t 05 0.2606 0.2909 0.1931 0.2554 h 06 0.2652 0.2497 0.2522 0.2328 r 07 0.2676 0.2597 0.2446 0.2281 m 08 0.2492 0.2347 0.2594 0.2568 k 09 0.2386 0.2533 0.2225 0.2856 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ZFP8:M0371_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AZF2/M0372_1.02/CISBP XX ID AZF2:M0372_1.02:CISBP XX NA AZF2 XX DE AZF2 XX OS Arabidopsis thaliana XX BF 10730; XX P0 A C G T 01 0.2106 0.2328 0.3142 0.2423 g 02 0.7827 0.0012 0.0978 0.1182 A 03 0.0026 0.4027 0.5888 0.0059 s 04 0.0733 0.0690 0.0002 0.8575 T 05 0.2146 0.0489 0.6448 0.0917 g 06 0.2975 0.1272 0.2226 0.3527 w 07 0.2848 0.2263 0.2736 0.2153 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AZF2:M0372_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ZAT7/M0373_1.02/CISBP XX ID ZAT7:M0373_1.02:CISBP XX NA ZAT7 XX DE ZAT7 XX OS Arabidopsis thaliana XX BF 10731; XX P0 A C G T 01 0.2959 0.3168 0.1937 0.1937 m 02 0.2899 0.2690 0.1668 0.2744 h 03 0.2744 0.2899 0.1668 0.2690 h 04 0.1668 0.2744 0.2690 0.2899 b 05 0.9285 0.0238 0.0238 0.0238 A 06 0.0001 0.1967 0.8031 0.0001 G 07 0.1967 0.0001 0.0001 0.8031 T 08 0.0001 0.0001 0.9996 0.0001 G 09 0.0564 0.1500 0.1448 0.6488 t 10 0.4797 0.1717 0.2653 0.0833 r 11 0.2593 0.4797 0.0833 0.1777 m 12 0.0833 0.1717 0.1709 0.5740 t 13 0.2263 0.2263 0.3211 0.2263 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ZAT7:M0373_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G53600/M0374_1.02/CISBP XX ID AT3G53600:M0374_1.02:CISBP XX NA AT3G53600 XX DE AT3G53600 XX OS Arabidopsis thaliana XX BF 8906; XX P0 A C G T 01 0.2372 0.2302 0.3046 0.2279 g 02 0.5933 0.0181 0.1247 0.2639 w 03 0.0239 0.3550 0.5911 0.0300 s 04 0.0311 0.1807 0.0022 0.7860 T 05 0.2719 0.0887 0.4809 0.1585 r 06 0.2837 0.1827 0.2442 0.2894 w 07 0.2491 0.2346 0.2646 0.2517 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G53600:M0374_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G04390/M0375_1.02/CISBP XX ID AT5G04390:M0375_1.02:CISBP XX NA AT5G04390 XX DE AT5G04390 XX OS Arabidopsis thaliana XX BF 10732; XX P0 A C G T 01 0.2509 0.2410 0.2944 0.2138 r 02 0.6568 0.0299 0.0788 0.2345 a 03 0.0594 0.3387 0.5640 0.0379 s 04 0.0649 0.2478 0.0001 0.6872 T 05 0.3240 0.0799 0.3997 0.1965 r 06 0.3008 0.1862 0.2297 0.2833 w 07 0.2666 0.2461 0.2437 0.2437 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G04390:M0375_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RBE/M0376_1.02/CISBP XX ID RBE:M0376_1.02:CISBP XX NA RBE XX DE RBE XX OS Arabidopsis thaliana XX BF 10733; XX P0 A C G T 01 0.2555 0.2431 0.2607 0.2407 r 02 0.6855 0.0220 0.0024 0.2901 W 03 0.0959 0.3450 0.5575 0.0016 s 04 0.0512 0.1298 0.0259 0.7931 T 05 0.2125 0.1498 0.3077 0.3300 k 06 0.3153 0.1730 0.2686 0.2431 r 07 0.2570 0.2520 0.1923 0.2986 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RBE:M0376_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RHL41/M0377_1.02/CISBP XX ID RHL41:M0377_1.02:CISBP XX NA RHL41 XX DE RHL41 XX OS Arabidopsis thaliana XX BF 10734; XX P0 A C G T 01 0.2522 0.2448 0.2902 0.2128 r 02 0.6324 0.0195 0.0751 0.2730 w 03 0.0225 0.2795 0.6875 0.0105 S 04 0.0137 0.2318 0.0001 0.7544 T 05 0.2536 0.1234 0.4530 0.1700 r 06 0.2817 0.2045 0.2377 0.2761 w 07 0.2585 0.2293 0.2638 0.2484 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RHL41:M0377_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AZF1/M0378_1.02/CISBP XX ID AZF1:M0378_1.02:CISBP XX NA AZF1 XX DE AZF1 XX OS Arabidopsis thaliana XX BF 10735; XX P0 A C G T 01 0.2210 0.2442 0.2954 0.2394 g 02 0.6746 0.0064 0.1257 0.1933 a 03 0.0003 0.3839 0.6082 0.0075 s 04 0.0514 0.2281 0.0000 0.7204 T 05 0.1804 0.0594 0.6110 0.1492 g 06 0.2594 0.1705 0.2468 0.3233 w 07 0.2541 0.2393 0.2698 0.2369 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AZF1:M0378_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CAMTA3/M0581_1.02/CISBP XX ID CAMTA3:M0581_1.02:CISBP XX NA CAMTA3 XX DE CAMTA3 XX OS Arabidopsis thaliana XX BF 7521; XX P0 A C G T 01 0.2333 0.5405 0.1835 0.0426 c 02 0.0140 0.9736 0.0046 0.0078 C 03 0.0318 0.0003 0.9616 0.0064 G 04 0.0679 0.6640 0.0008 0.2673 y 05 0.0370 0.0000 0.9629 0.0001 G 06 0.0013 0.0008 0.0000 0.9979 T 07 0.2308 0.2736 0.2109 0.2847 y 08 0.2902 0.2473 0.2497 0.2128 a 09 0.2407 0.2582 0.2505 0.2505 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CAMTA3:M0581_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G64220/M0582_1.02/CISBP XX ID AT5G64220:M0582_1.02:CISBP XX NA AT5G64220 XX DE AT5G64220 XX OS Arabidopsis thaliana XX BF 10935; XX P0 A C G T 01 0.3126 0.2034 0.2203 0.2637 w 02 0.3269 0.2374 0.1759 0.2598 w 03 0.3930 0.1207 0.2432 0.2432 a 04 0.2199 0.4383 0.3058 0.0360 s 05 0.0263 0.9547 0.0076 0.0114 C 06 0.0183 0.0106 0.9700 0.0012 G 07 0.0313 0.6816 0.0072 0.2799 Y 08 0.0080 0.0066 0.9700 0.0154 G 09 0.0075 0.0109 0.0537 0.9279 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G64220:M0582_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATGRP2B/M0583_1.02/CISBP XX ID ATGRP2B:M0583_1.02:CISBP XX NA ATGRP2B XX DE ATGRP2B XX OS Arabidopsis thaliana XX BF 10937; XX P0 A C G T 01 0.0033 0.0033 0.3322 0.6612 k 02 0.0033 0.0033 0.0033 0.9901 T 03 0.0033 0.0033 0.0033 0.9901 T 04 0.0033 0.0033 0.0033 0.9901 T 05 0.0033 0.0033 0.0033 0.9901 T 06 0.6612 0.0033 0.0033 0.3322 w 07 0.0033 0.0033 0.0033 0.9901 T 08 0.0049 0.0049 0.0049 0.9853 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATGRP2B:M0583_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK22848.1/M0587_1.02/CISBP XX ID PK22848.1:M0587_1.02:CISBP XX NA PK22848.1 XX DE PK22848.1 XX OS Cannabis sativa XX BF 10943; XX P0 A C G T 01 0.2949 0.2949 0.2051 0.2051 m 02 0.2711 0.2410 0.2440 0.2440 a 03 0.6780 0.1073 0.1073 0.1073 a 04 0.7776 0.0741 0.0741 0.0741 A 05 0.8209 0.0323 0.0323 0.1144 A 06 0.0001 0.0001 0.0001 0.9997 T 07 0.0001 0.0001 0.0001 0.9997 T 08 0.0001 0.0001 0.0822 0.9176 T 09 0.2629 0.1271 0.1318 0.4783 w 10 0.6270 0.0959 0.1812 0.0959 a 11 0.5717 0.1428 0.1428 0.1428 a 12 0.3870 0.1760 0.1760 0.2611 w 13 0.3467 0.2178 0.2178 0.2178 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK22848.1:M0587_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G20110/M0588_1.02/CISBP XX ID AT2G20110:M0588_1.02:CISBP XX NA AT2G20110 XX DE AT2G20110 XX OS Arabidopsis thaliana XX BF 10944; XX P0 A C G T 01 0.3988 0.0020 0.3988 0.2004 r 02 0.0020 0.0020 0.0020 0.9940 T 03 0.0020 0.0020 0.0020 0.9940 T 04 0.0020 0.2004 0.0020 0.7956 T 05 0.7956 0.0020 0.2004 0.0020 A 06 0.9940 0.0020 0.0020 0.0020 A 07 0.9940 0.0020 0.0020 0.0020 A 08 0.2500 0.2500 0.0025 0.4975 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G20110:M0588_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G04850/M0589_1.02/CISBP XX ID AT3G04850:M0589_1.02:CISBP XX NA AT3G04850 XX DE AT3G04850 XX OS Arabidopsis thaliana XX BF 10945; XX P0 A C G T 01 0.5228 0.1221 0.1768 0.1784 a 02 0.5040 0.0701 0.1321 0.2939 w 03 0.1170 0.0906 0.0532 0.7392 T 04 0.0604 0.0425 0.0219 0.8752 T 05 0.0207 0.4227 0.0441 0.5125 y 06 0.5125 0.0441 0.4227 0.0207 r 07 0.8752 0.0219 0.0425 0.0604 A 08 0.7392 0.0532 0.0906 0.1170 A 09 0.2939 0.1321 0.0701 0.5040 w 10 0.1784 0.1768 0.1221 0.5228 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G04850:M0589_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SOL1/M0590_1.02/CISBP XX ID SOL1:M0590_1.02:CISBP XX NA SOL1 XX DE SOL1 XX OS Arabidopsis thaliana XX BF 10946; XX P0 A C G T 01 0.2581 0.0970 0.4191 0.2258 r 02 0.0190 0.0190 0.0002 0.9617 T 03 0.0002 0.0002 0.0002 0.9995 T 04 0.0329 0.1476 0.0165 0.8029 T 05 0.3278 0.0002 0.6063 0.0657 r 06 0.9831 0.0002 0.0165 0.0002 A 07 0.9317 0.0002 0.0002 0.0679 A 08 0.2766 0.1065 0.0002 0.6167 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SOL1:M0590_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G29000/M0591_1.02/CISBP XX ID AT4G29000:M0591_1.02:CISBP XX NA AT4G29000 XX DE AT4G29000 XX OS Arabidopsis thaliana XX BF 10947; XX P0 A C G T 01 0.3157 0.2281 0.2281 0.2281 a 02 0.5939 0.0248 0.2510 0.1302 r 03 0.0001 0.0001 0.0001 0.9997 T 04 0.0001 0.0001 0.0001 0.9997 T 05 0.0001 0.0942 0.0001 0.9056 T 06 0.2243 0.0001 0.7755 0.0001 G 07 0.9997 0.0001 0.0001 0.0001 A 08 0.9997 0.0001 0.0001 0.0001 A 09 0.1154 0.2254 0.0220 0.6372 t 10 0.2253 0.2253 0.2253 0.3242 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G29000:M0591_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BRADI1G55710/M0592_1.02/CISBP XX ID BRADI1G55710:M0592_1.02:CISBP XX NA BRADI1G55710 XX DE BRADI1G55710 XX OS Brachypodium distachyon XX BF 10948; XX P0 A C G T 01 0.2931 0.2703 0.1981 0.2386 m 02 0.4574 0.1433 0.2769 0.1224 r 03 0.0613 0.1247 0.0581 0.7559 T 04 0.1068 0.1602 0.1330 0.6000 t 05 0.0562 0.3292 0.1055 0.5090 y 06 0.5090 0.1055 0.3292 0.0562 r 07 0.6000 0.1330 0.1602 0.1068 a 08 0.7559 0.0581 0.1247 0.0613 A 09 0.1224 0.2769 0.1433 0.4574 y 10 0.2386 0.1981 0.2703 0.2931 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BRADI1G55710:M0592_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_09.0001000301/M0598_1.02/CISBP XX ID fgenesh1_pg.C_Chr_09.0001000301:M0598_1.02:CISBP XX NA fgenesh1_pg.C_Chr_09.0001000301 XX DE fgenesh1_pg.C_Chr_09.0001000301 XX OS Ostreococcus tauri XX BF 10954; XX P0 A C G T 01 0.2993 0.1815 0.2790 0.2402 r 02 0.1315 0.2348 0.1315 0.5022 t 03 0.2886 0.0896 0.1600 0.4618 w 04 0.0734 0.3783 0.1174 0.4309 y 05 0.2621 0.1757 0.3719 0.1903 r 06 0.4015 0.2014 0.2340 0.1632 a 07 0.3450 0.2505 0.1801 0.2244 m 08 0.2092 0.2714 0.2312 0.2881 y 09 0.2221 0.2406 0.2659 0.2713 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_09.0001000301:M0598_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgeneshCV_pg.C_scaffold_18000164/M0599_1.02/CISBP XX ID fgeneshCV_pg.C_scaffold_18000164:M0599_1.02:CISBP XX NA fgeneshCV_pg.C_scaffold_18000164 XX DE fgeneshCV_pg.C_scaffold_18000164 XX OS Chlorella vulgaris XX BF 10955; XX P0 A C G T 01 0.3393 0.1012 0.2616 0.2979 d 02 0.0933 0.1000 0.0601 0.7466 T 03 0.1195 0.0817 0.0462 0.7525 T 04 0.0564 0.2404 0.0022 0.7010 T 05 0.3379 0.1388 0.4516 0.0717 r 06 0.5567 0.1332 0.1113 0.1988 a 07 0.5219 0.1380 0.1556 0.1845 a 08 0.2574 0.2193 0.1470 0.3763 w 09 0.2500 0.2027 0.1890 0.3584 t 10 0.2636 0.1933 0.2180 0.3252 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgeneshCV_pg.C_scaffold_18000164:M0599_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.20.00.89.1/M0601_1.02/CISBP XX ID gw1.20.00.89.1:M0601_1.02:CISBP XX NA gw1.20.00.89.1 XX DE gw1.20.00.89.1 XX OS Ostreococcus tauri XX BF 10957; XX P0 A C G T 01 0.5427 0.1180 0.1135 0.2258 a 02 0.2796 0.1440 0.1952 0.3812 w 03 0.0965 0.1757 0.1197 0.6080 t 04 0.2026 0.1238 0.0859 0.5878 t 05 0.0845 0.2805 0.2027 0.4323 y 06 0.4323 0.2027 0.2805 0.0845 r 07 0.5878 0.0859 0.1238 0.2026 a 08 0.6080 0.1197 0.1757 0.0965 a 09 0.3812 0.1952 0.1440 0.2796 w 10 0.2258 0.1135 0.1180 0.5427 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.20.00.89.1:M0601_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G29160/M0646_1.02/CISBP XX ID AT1G29160:M0646_1.02:CISBP XX NA AT1G29160 XX DE AT1G29160 XX OS Arabidopsis thaliana XX BF 10997; XX P0 A C G T 01 0.2500 0.0008 0.5822 0.1669 r 02 0.6103 0.0006 0.0006 0.3886 w 03 0.2727 0.0005 0.0005 0.7264 W 04 0.9986 0.0005 0.0005 0.0005 A 05 0.9079 0.0005 0.0912 0.0005 A 06 0.4088 0.5449 0.0005 0.0458 m 07 0.0458 0.0005 0.9533 0.0005 G 08 0.0593 0.1180 0.0006 0.8222 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G29160:M0646_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G64620/M0647_1.02/CISBP XX ID AT1G64620:M0647_1.02:CISBP XX NA AT1G64620 XX DE AT1G64620 XX OS Arabidopsis thaliana XX BF 10998; XX P0 A C G T 01 0.2511 0.2587 0.2561 0.2341 v 02 0.3208 0.1965 0.2498 0.2329 a 03 0.4147 0.1002 0.1353 0.3498 w 04 0.8119 0.0722 0.0385 0.0774 A 05 0.8313 0.0636 0.0033 0.1018 A 06 0.6579 0.2325 0.0266 0.0830 a 07 0.0654 0.0234 0.8464 0.0648 G 08 0.1695 0.2405 0.2311 0.3588 t 09 0.2677 0.1887 0.2704 0.2732 d 10 0.2883 0.2093 0.2688 0.2337 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G64620:M0647_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATDOF2.4/M0648_1.02/CISBP XX ID ATDOF2.4:M0648_1.02:CISBP XX NA ATDOF2.4 XX DE ATDOF2.4 XX OS Arabidopsis thaliana XX BF 10999; XX P0 A C G T 01 0.3806 0.1710 0.2332 0.2152 a 02 0.4263 0.0905 0.1271 0.3561 w 03 0.8067 0.0710 0.0184 0.1039 A 04 0.8148 0.0662 0.0007 0.1183 A 05 0.6575 0.2518 0.0156 0.0751 m 06 0.0811 0.0734 0.7619 0.0836 G 07 0.1772 0.2415 0.2100 0.3713 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATDOF2.4:M0648_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ADOF2/M0649_1.02/CISBP XX ID ADOF2:M0649_1.02:CISBP XX NA ADOF2 XX DE ADOF2 XX OS Arabidopsis thaliana XX BF 11000; XX P0 A C G T 01 0.2427 0.2551 0.2736 0.2286 s 02 0.3118 0.2049 0.2453 0.2380 a 03 0.3460 0.1464 0.1684 0.3392 w 04 0.8086 0.0664 0.0423 0.0827 A 05 0.7989 0.0921 0.0159 0.0931 A 06 0.5023 0.4031 0.0180 0.0766 m 07 0.1109 0.0324 0.7793 0.0774 G 08 0.1955 0.2561 0.2096 0.3388 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ADOF2:M0649_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G45610/M0650_1.02/CISBP XX ID AT3G45610:M0650_1.02:CISBP XX NA AT3G45610 XX DE AT3G45610 XX OS Arabidopsis thaliana XX BF 11001; XX P0 A C G T 01 0.2388 0.2561 0.2639 0.2412 s 02 0.2817 0.2425 0.2284 0.2474 a 03 0.2591 0.2038 0.1978 0.3394 w 04 0.4982 0.1385 0.1744 0.1889 a 05 0.5037 0.1745 0.1745 0.1472 a 06 0.2384 0.4948 0.0444 0.2223 c 07 0.2410 0.0719 0.5364 0.1506 g 08 0.2743 0.2201 0.2201 0.2855 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G45610:M0650_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC cdf3/M0651_1.02/CISBP XX ID cdf3:M0651_1.02:CISBP XX NA cdf3 XX DE cdf3 XX OS Arabidopsis thaliana XX BF 11002; XX P0 A C G T 01 0.4467 0.1428 0.2196 0.1909 a 02 0.6070 0.0293 0.0653 0.2984 w 03 0.9942 0.0026 0.0011 0.0020 A 04 0.9889 0.0048 0.0000 0.0062 A 05 0.8798 0.0271 0.0831 0.0100 A 06 0.0187 0.0065 0.9690 0.0058 G 07 0.0703 0.2908 0.1596 0.4794 y 08 0.2225 0.1020 0.4952 0.1803 g 09 0.2865 0.3430 0.1686 0.2019 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=cdf3:M0651_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF4.7/M0652_1.02/CISBP XX ID DOF4.7:M0652_1.02:CISBP XX NA DOF4.7 XX DE DOF4.7 XX OS Arabidopsis thaliana XX BF 11003; XX P0 A C G T 01 0.2594 0.2468 0.2395 0.2543 w 02 0.2466 0.2276 0.2865 0.2393 g 03 0.3665 0.1749 0.2179 0.2408 a 04 0.3763 0.1156 0.1317 0.3763 w 05 0.7946 0.0596 0.0305 0.1153 A 06 0.7405 0.0992 0.0403 0.1200 A 07 0.4720 0.3865 0.0561 0.0854 m 08 0.1448 0.0368 0.7101 0.1083 G 09 0.1945 0.2328 0.1850 0.3877 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF4.7:M0652_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CDF2/M0653_1.02/CISBP XX ID CDF2:M0653_1.02:CISBP XX NA CDF2 XX DE CDF2 XX OS Arabidopsis thaliana XX BF 11004; XX P0 A C G T 01 0.3335 0.2839 0.2348 0.1478 m 02 0.6077 0.0924 0.1500 0.1498 a 03 0.6928 0.0161 0.0406 0.2505 W 04 0.9805 0.0104 0.0038 0.0054 A 05 0.9790 0.0101 0.0024 0.0085 A 06 0.8682 0.0290 0.0805 0.0223 A 07 0.0175 0.0073 0.9691 0.0061 G 08 0.0531 0.2948 0.1544 0.4977 y 09 0.3283 0.0771 0.3945 0.2000 r 10 0.2989 0.2819 0.1554 0.2637 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CDF2:M0653_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TMO6/M0654_1.02/CISBP XX ID TMO6:M0654_1.02:CISBP XX NA TMO6 XX DE TMO6 XX OS Arabidopsis thaliana XX BF 11005; XX P0 A C G T 01 0.2468 0.2468 0.2621 0.2443 g 02 0.3268 0.2126 0.2280 0.2326 a 03 0.3959 0.1279 0.1456 0.3306 w 04 0.8416 0.0607 0.0167 0.0811 A 05 0.8504 0.0795 0.0003 0.0698 A 06 0.6110 0.3287 0.0135 0.0468 m 07 0.0661 0.0515 0.7665 0.1158 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TMO6:M0654_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OBP4/M0655_1.02/CISBP XX ID OBP4:M0655_1.02:CISBP XX NA OBP4 XX DE OBP4 XX OS Arabidopsis thaliana XX BF 11006; XX P0 A C G T 01 0.2492 0.2516 0.2505 0.2487 s 02 0.0501 0.0501 0.7499 0.1499 G 03 0.5980 0.0002 0.0002 0.4015 w 04 0.0002 0.0002 0.0002 0.9993 T 05 0.9993 0.0002 0.0002 0.0002 A 06 0.9993 0.0002 0.0002 0.0002 A 07 0.0002 0.9993 0.0002 0.0002 C 08 0.0002 0.0002 0.9993 0.0002 G 09 0.3000 0.1999 0.1005 0.3997 w 10 0.2002 0.3006 0.2002 0.2991 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OBP4:M0655_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF5.6/M0657_1.02/CISBP XX ID DOF5.6:M0657_1.02:CISBP XX NA DOF5.6 XX DE DOF5.6 XX OS Arabidopsis thaliana XX BF 11007; XX P0 A C G T 01 0.2540 0.2566 0.2618 0.2276 v 02 0.3637 0.1701 0.2273 0.2390 a 03 0.4324 0.0839 0.1077 0.3760 w 04 0.9546 0.0345 0.0005 0.0104 A 05 0.9277 0.0402 0.0006 0.0316 A 06 0.6131 0.3075 0.0556 0.0238 m 07 0.0496 0.0278 0.8843 0.0383 G 08 0.1516 0.2474 0.2130 0.3880 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF5.6:M0657_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.149.93.1/M0658_1.02/CISBP XX ID e_gw1.149.93.1:M0658_1.02:CISBP XX NA e_gw1.149.93.1 XX DE e_gw1.149.93.1 XX OS Physcomitrella patens XX BF 11008; XX P0 A C G T 01 0.2554 0.2579 0.2579 0.2288 v 02 0.3268 0.2043 0.2520 0.2169 r 03 0.3998 0.1385 0.1625 0.2992 w 04 0.6486 0.1323 0.0786 0.1405 a 05 0.7011 0.1018 0.0542 0.1430 A 06 0.5687 0.2505 0.0007 0.1801 m 07 0.0820 0.0837 0.7554 0.0788 G 08 0.1702 0.2642 0.2229 0.3427 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.149.93.1:M0658_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.170.52.1/M0659_1.02/CISBP XX ID e_gw1.170.52.1:M0659_1.02:CISBP XX NA e_gw1.170.52.1 XX DE e_gw1.170.52.1 XX OS Physcomitrella patens XX BF 11009; XX P0 A C G T 01 0.2430 0.2659 0.2529 0.2382 s 02 0.3025 0.2153 0.2604 0.2219 r 03 0.3957 0.1111 0.1725 0.3207 w 04 0.8877 0.0429 0.0098 0.0597 A 05 0.8920 0.0462 0.0006 0.0612 A 06 0.7154 0.2050 0.0280 0.0516 A 07 0.0724 0.0218 0.8390 0.0668 G 08 0.1818 0.2580 0.2288 0.3313 y 09 0.2709 0.1928 0.2709 0.2655 d 10 0.2803 0.2183 0.2720 0.2295 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.170.52.1:M0659_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.392.16.1/M0660_1.02/CISBP XX ID e_gw1.392.16.1:M0660_1.02:CISBP XX NA e_gw1.392.16.1 XX DE e_gw1.392.16.1 XX OS Physcomitrella patens XX BF 11010; XX P0 A C G T 01 0.2532 0.2635 0.2609 0.2223 v 02 0.3344 0.1929 0.2552 0.2175 r 03 0.4820 0.0707 0.1177 0.3296 w 04 0.8605 0.0620 0.0129 0.0646 A 05 0.9257 0.0355 0.0002 0.0385 A 06 0.6720 0.1470 0.0519 0.1291 a 07 0.0708 0.0268 0.8976 0.0048 G 08 0.1389 0.2883 0.1952 0.3776 y 09 0.2850 0.1580 0.2966 0.2604 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.392.16.1:M0660_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_370003/M0661_1.02/CISBP XX ID estExt_fgenesh1_pg.C_370003:M0661_1.02:CISBP XX NA estExt_fgenesh1_pg.C_370003 XX DE estExt_fgenesh1_pg.C_370003 XX OS Physcomitrella patens XX BF 11011; XX P0 A C G T 01 0.3144 0.1808 0.2450 0.2597 w 02 0.1803 0.4411 0.1592 0.2194 c 03 0.1784 0.1917 0.3125 0.3173 k 04 0.2381 0.1340 0.1661 0.4618 t 05 0.3029 0.1347 0.1038 0.4587 w 06 0.4587 0.1038 0.1347 0.3029 w 07 0.4618 0.1661 0.1340 0.2381 a 08 0.3173 0.3125 0.1917 0.1784 m 09 0.2194 0.1592 0.4411 0.1803 g 10 0.2597 0.2450 0.1808 0.3144 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_370003:M0661_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.12.257.1/M0662_1.02/CISBP XX ID gw1.12.257.1:M0662_1.02:CISBP XX NA gw1.12.257.1 XX DE gw1.12.257.1 XX OS Physcomitrella patens XX BF 11012; XX P0 A C G T 01 0.2547 0.2573 0.2599 0.2282 v 02 0.2627 0.2108 0.2087 0.3177 w 03 0.5117 0.1845 0.1466 0.1572 a 04 0.5203 0.1821 0.1138 0.1839 a 05 0.3530 0.3901 0.0512 0.2057 m 06 0.1955 0.1285 0.5423 0.1337 g 07 0.2099 0.2513 0.2320 0.3069 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.12.257.1:M0662_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.385.26.1/M0663_1.02/CISBP XX ID gw1.385.26.1:M0663_1.02:CISBP XX NA gw1.385.26.1 XX DE gw1.385.26.1 XX OS Physcomitrella patens XX BF 11013; XX P0 A C G T 01 0.2515 0.2644 0.2566 0.2276 v 02 0.3430 0.1864 0.2541 0.2165 r 03 0.4629 0.0854 0.1287 0.3230 w 04 0.8277 0.0679 0.0238 0.0805 A 05 0.8555 0.0623 0.0007 0.0816 A 06 0.6435 0.2164 0.0539 0.0862 a 07 0.0607 0.0273 0.8597 0.0523 G 08 0.1504 0.2687 0.2072 0.3737 y 09 0.2594 0.1739 0.3074 0.2594 d 10 0.2834 0.2616 0.2275 0.2275 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.385.26.1:M0663_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_08.0001000114/M0664_1.02/CISBP XX ID fgenesh1_pg.C_Chr_08.0001000114:M0664_1.02:CISBP XX NA fgenesh1_pg.C_Chr_08.0001000114 XX DE fgenesh1_pg.C_Chr_08.0001000114 XX OS Ostreococcus tauri XX BF 11014; XX P0 A C G T 01 0.2397 0.2623 0.2676 0.2303 s 02 0.3590 0.1855 0.2312 0.2243 a 03 0.4146 0.1422 0.1510 0.2922 w 04 0.6173 0.1350 0.0923 0.1553 a 05 0.6466 0.1169 0.0688 0.1676 a 06 0.5461 0.2938 0.0005 0.1596 m 07 0.1267 0.0997 0.7075 0.0661 G 08 0.1654 0.2444 0.2146 0.3756 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_08.0001000114:M0664_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC E2FE/M0665_1.02/CISBP XX ID E2FE:M0665_1.02:CISBP XX NA E2FE XX DE E2FE XX OS Arabidopsis thaliana XX BF 7504; XX P0 A C G T 01 0.2043 0.1472 0.0736 0.5749 t 02 0.2000 0.0254 0.2972 0.4774 k 03 0.0860 0.5491 0.3246 0.0403 s 04 0.0001 0.1985 0.8015 0.0000 G 05 0.0000 1.0000 0.0000 0.0000 C 06 0.0000 0.0000 1.0000 0.0000 G 07 0.0000 0.8015 0.1985 0.0001 C 08 0.0403 0.3246 0.5491 0.0860 s 09 0.4774 0.2972 0.0254 0.2000 m 10 0.5749 0.0736 0.1472 0.2043 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=E2FE:M0665_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.38.2.1/M0677_1.02/CISBP XX ID e_gw1.38.2.1:M0677_1.02:CISBP XX NA e_gw1.38.2.1 XX DE e_gw1.38.2.1 XX OS Physcomitrella patens XX BF 11023; XX P0 A C G T 01 0.2338 0.1390 0.4260 0.2012 g 02 0.1518 0.4381 0.3925 0.0177 s 03 0.0206 0.0486 0.8397 0.0912 G 04 0.0069 0.9927 0.0000 0.0004 C 05 0.0139 0.0001 0.9858 0.0002 G 06 0.0133 0.9793 0.0028 0.0046 C 07 0.0834 0.5520 0.2244 0.1403 c 08 0.4093 0.2385 0.1184 0.2338 a 09 0.3794 0.1810 0.1226 0.3169 w 10 0.3066 0.2227 0.2015 0.2692 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.38.2.1:M0677_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_gwp_GeneWisePlus.C_Chr_02.00010270/M0678_1.02/CISBP XX ID estExt_gwp_GeneWisePlus.C_Chr_02.00010270:M0678_1.02:CISBP XX NA estExt_gwp_GeneWisePlus.C_Chr_02.00010270 XX DE estExt_gwp_GeneWisePlus.C_Chr_02.00010270 XX OS Ostreococcus tauri XX BF 11024; XX P0 A C G T 01 0.2711 0.1333 0.1746 0.4210 w 02 0.2439 0.1587 0.1393 0.4580 t 03 0.1077 0.1215 0.7349 0.0359 G 04 0.0199 0.0276 0.9524 0.0001 G 05 0.0030 0.9968 0.0000 0.0002 C 06 0.0000 0.0000 0.9998 0.0001 G 07 0.0000 0.9313 0.0685 0.0002 C 08 0.0190 0.3223 0.4905 0.1682 s 09 0.1056 0.5553 0.1110 0.2281 c 10 0.3818 0.0719 0.2773 0.2691 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_gwp_GeneWisePlus.C_Chr_02.00010270:M0678_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EIL3/M0680_1.02/CISBP XX ID EIL3:M0680_1.02:CISBP XX NA EIL3 XX DE EIL3 XX OS Arabidopsis thaliana XX BF 11026; XX P0 A C G T 01 0.2274 0.2274 0.3178 0.2274 g 02 0.5534 0.1489 0.1489 0.1489 a 03 0.8623 0.0459 0.0459 0.0459 A 04 0.0001 0.0001 0.0001 0.9996 T 05 0.0001 0.0001 0.9996 0.0001 G 06 0.4940 0.0001 0.0001 0.5057 w 07 0.9996 0.0001 0.0001 0.0001 A 08 0.0001 0.5006 0.0001 0.4991 y 09 0.0227 0.9318 0.0227 0.0227 C 10 0.1013 0.1013 0.1013 0.6961 T 11 0.2042 0.2042 0.3873 0.2042 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EIL3:M0680_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EIL1/M0681_1.02/CISBP XX ID EIL1:M0681_1.02:CISBP XX NA EIL1 XX DE EIL1 XX OS Arabidopsis thaliana XX BF 11027; XX P0 A C G T 01 0.4178 0.2585 0.1804 0.1433 m 02 0.1090 0.1870 0.1016 0.6025 t 03 0.0766 0.1289 0.6134 0.1811 g 04 0.3077 0.2042 0.0470 0.4411 w 05 0.7324 0.0795 0.0074 0.1806 A 06 0.1099 0.4115 0.0005 0.4781 y 07 0.1248 0.4581 0.1919 0.2252 c 08 0.2180 0.1972 0.2032 0.3816 t 09 0.3077 0.1758 0.2840 0.2325 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EIL1:M0681_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EIN3/M0682_1.02/CISBP XX ID EIN3:M0682_1.02:CISBP XX NA EIN3 XX DE EIN3 XX OS Arabidopsis thaliana XX BF 11028; XX P0 A C G T 01 0.2432 0.2212 0.2813 0.2543 k 02 0.2402 0.1593 0.3572 0.2433 g 03 0.4485 0.0934 0.3466 0.1115 r 04 0.0857 0.1863 0.0011 0.7269 T 05 0.2973 0.0487 0.4778 0.1762 r 06 0.1762 0.4778 0.0487 0.2973 y 07 0.7269 0.0011 0.1863 0.0857 A 08 0.1115 0.3466 0.0934 0.4485 y 09 0.2433 0.3572 0.1593 0.2402 c 10 0.2543 0.2813 0.2212 0.2432 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EIN3:M0682_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os09g31400/M0683_1.02/CISBP XX ID LOC_Os09g31400:M0683_1.02:CISBP XX NA LOC_Os09g31400 XX DE LOC_Os09g31400 XX OS Oryza sativa XX BF 11030; XX P0 A C G T 01 0.2293 0.2293 0.3120 0.2293 g 02 0.4596 0.1526 0.2353 0.1526 a 03 0.8559 0.0480 0.0480 0.0480 A 04 0.0001 0.0001 0.0001 0.9996 T 05 0.0001 0.0001 0.9996 0.0001 G 06 0.2206 0.0001 0.0001 0.7791 T 07 0.9996 0.0001 0.0001 0.0001 A 08 0.0001 0.4804 0.0001 0.5193 y 09 0.0208 0.9376 0.0208 0.0208 C 10 0.0976 0.0976 0.1869 0.6179 t 11 0.2921 0.2021 0.3038 0.2021 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os09g31400:M0683_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.87.73.1/M0684_1.02/CISBP XX ID e_gw1.87.73.1:M0684_1.02:CISBP XX NA e_gw1.87.73.1 XX DE e_gw1.87.73.1 XX OS Physcomitrella patens XX BF 11031; XX P0 A C G T 01 0.2811 0.2469 0.2396 0.2325 a 02 0.4223 0.2388 0.2227 0.1162 a 03 0.1459 0.1931 0.0868 0.5743 t 04 0.0957 0.0604 0.6861 0.1578 G 05 0.3234 0.2234 0.0736 0.3795 w 06 0.7271 0.0806 0.0149 0.1775 A 07 0.1335 0.4132 0.0232 0.4301 y 08 0.1527 0.4192 0.1980 0.2301 c 09 0.2374 0.1944 0.2105 0.3577 t 10 0.2925 0.1980 0.2700 0.2395 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.87.73.1:M0684_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA10/M0758_1.02/CISBP XX ID GATA10:M0758_1.02:CISBP XX NA GATA10 XX DE GATA10 XX OS Arabidopsis thaliana XX BF 11093; XX P0 A C G T 01 0.1002 0.0669 0.1335 0.6994 T 02 0.8415 0.0266 0.1317 0.0003 A 03 0.0002 0.0002 0.9993 0.0002 G 04 0.9993 0.0002 0.0002 0.0002 A 05 0.0002 0.0002 0.0002 0.9993 T 06 0.0002 0.9993 0.0002 0.0002 C 07 0.0003 0.1113 0.0835 0.8049 T 08 0.1113 0.1113 0.7400 0.0374 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA10:M0758_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA11/M0759_1.02/CISBP XX ID GATA11:M0759_1.02:CISBP XX NA GATA11 XX DE GATA11 XX OS Arabidopsis thaliana XX BF 11094; XX P0 A C G T 01 0.1668 0.0420 0.1668 0.6244 t 02 0.9024 0.0003 0.0970 0.0003 A 03 0.0003 0.0003 0.9992 0.0003 G 04 0.9992 0.0003 0.0003 0.0003 A 05 0.0003 0.0003 0.0003 0.9992 T 06 0.0003 0.9992 0.0003 0.0003 C 07 0.0003 0.0003 0.0003 0.9991 T 08 0.0438 0.1306 0.6949 0.1306 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA11:M0759_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TIFY2A/M0760_1.02/CISBP XX ID TIFY2A:M0760_1.02:CISBP XX NA TIFY2A XX DE TIFY2A XX OS Arabidopsis thaliana XX BF 11095; XX P0 A C G T 01 0.2592 0.2491 0.2299 0.2618 w 02 0.4029 0.2371 0.1276 0.2324 a 03 0.0800 0.0115 0.8555 0.0531 G 04 0.9153 0.0044 0.0081 0.0722 A 05 0.0102 0.0023 0.0006 0.9868 T 06 0.1341 0.3232 0.2984 0.2443 s 07 0.2670 0.1959 0.2592 0.2779 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TIFY2A:M0760_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA15/M0761_1.02/CISBP XX ID GATA15:M0761_1.02:CISBP XX NA GATA15 XX DE GATA15 XX OS Arabidopsis thaliana XX BF 11096; XX P0 A C G T 01 0.2063 0.2812 0.2168 0.2957 y 02 0.3076 0.2001 0.2840 0.2083 r 03 0.1815 0.2876 0.0661 0.4648 y 04 0.0399 0.0376 0.9033 0.0192 G 05 0.9805 0.0003 0.0005 0.0187 A 06 0.0031 0.0008 0.0004 0.9957 T 07 0.0550 0.6633 0.1556 0.1261 c 08 0.3243 0.2007 0.2682 0.2068 r 09 0.2692 0.2388 0.2802 0.2118 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA15:M0761_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TIFY2B/M0762_1.02/CISBP XX ID TIFY2B:M0762_1.02:CISBP XX NA TIFY2B XX DE TIFY2B XX OS Arabidopsis thaliana XX BF 11097; XX P0 A C G T 01 0.4503 0.2259 0.1111 0.2127 a 02 0.0012 0.0034 0.9571 0.0382 G 03 0.9722 0.0016 0.0004 0.0258 A 04 0.0003 0.0007 0.0005 0.9984 T 05 0.0903 0.4005 0.2712 0.2381 s 06 0.2851 0.1950 0.2405 0.2794 w 07 0.3098 0.1700 0.2588 0.2614 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TIFY2B:M0762_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA1/M0763_1.02/CISBP XX ID GATA1:M0763_1.02:CISBP XX NA GATA1 XX DE GATA1 XX OS Arabidopsis thaliana XX BF 7509; XX P0 A C G T 01 0.2606 0.2398 0.2251 0.2746 w 02 0.2111 0.3055 0.1972 0.2861 y 03 0.3753 0.2250 0.2232 0.1765 a 04 0.1757 0.1606 0.5553 0.1084 g 05 0.8749 0.0000 0.0773 0.0478 A 06 0.0478 0.0773 0.0000 0.8749 T 07 0.1084 0.5553 0.1606 0.1757 c 08 0.1765 0.2232 0.2250 0.3753 t 09 0.2861 0.1972 0.3055 0.2111 r 10 0.2746 0.2251 0.2398 0.2606 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA1:M0763_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA6/M0764_1.02/CISBP XX ID GATA6:M0764_1.02:CISBP XX NA GATA6 XX DE GATA6 XX OS Arabidopsis thaliana XX BF 11098; XX P0 A C G T 01 0.1852 0.2709 0.2131 0.3308 y 02 0.5386 0.1315 0.2212 0.1087 a 03 0.2412 0.0861 0.5757 0.0971 g 04 0.7698 0.0126 0.0727 0.1449 A 05 0.1969 0.0000 0.0280 0.7750 T 06 0.1825 0.5592 0.1668 0.0915 c 07 0.1844 0.1325 0.1509 0.5321 t 08 0.3843 0.0776 0.3583 0.1797 r 09 0.3076 0.1355 0.2840 0.2729 d 10 0.3382 0.1932 0.2156 0.2530 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA6:M0764_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA8/M0765_1.02/CISBP XX ID GATA8:M0765_1.02:CISBP XX NA GATA8 XX DE GATA8 XX OS Arabidopsis thaliana XX BF 11099; XX P0 A C G T 01 0.2072 0.3185 0.2608 0.2135 s 02 0.4758 0.2411 0.1522 0.1310 a 03 0.0586 0.0294 0.8985 0.0135 G 04 0.9911 0.0006 0.0021 0.0062 A 05 0.0021 0.0206 0.0004 0.9770 T 06 0.0270 0.6490 0.1324 0.1916 c 07 0.0595 0.3787 0.1085 0.4533 y 08 0.3841 0.1577 0.3690 0.0892 r 09 0.3139 0.1866 0.3202 0.1793 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA8:M0765_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA4/M0766_1.02/CISBP XX ID GATA4:M0766_1.02:CISBP XX NA GATA4 XX DE GATA4 XX OS Arabidopsis thaliana XX BF 7512; XX P0 A C G T 01 0.2871 0.2505 0.1767 0.2858 h 02 0.1812 0.3002 0.1599 0.3587 y 03 0.4377 0.1672 0.2556 0.1395 r 04 0.1644 0.0625 0.7394 0.0337 G 05 0.9388 0.0034 0.0161 0.0417 A 06 0.0417 0.0161 0.0034 0.9388 T 07 0.0337 0.7394 0.0625 0.1644 C 08 0.1395 0.2556 0.1672 0.4377 y 09 0.3587 0.1599 0.3002 0.1812 r 10 0.2858 0.1767 0.2505 0.2871 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA4:M0766_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA26/M0767_1.02/CISBP XX ID GATA26:M0767_1.02:CISBP XX NA GATA26 XX DE GATA26 XX OS Arabidopsis thaliana XX BF 11100; XX P0 A C G T 01 0.2317 0.2976 0.2015 0.2692 y 02 0.3041 0.3678 0.1437 0.1845 m 03 0.0781 0.0483 0.6836 0.1901 G 04 0.8193 0.0118 0.0001 0.1688 A 05 0.0790 0.1623 0.0667 0.6920 T 06 0.1035 0.4281 0.2190 0.2494 c 07 0.3190 0.1734 0.2665 0.2411 r 08 0.2746 0.2226 0.2226 0.2802 w 09 0.2789 0.2046 0.2377 0.2789 w 10 0.2890 0.2390 0.2078 0.2642 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA26:M0767_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA9/M0768_1.02/CISBP XX ID GATA9:M0768_1.02:CISBP XX NA GATA9 XX DE GATA9 XX OS Arabidopsis thaliana XX BF 11101; XX P0 A C G T 01 0.2274 0.2274 0.2274 0.3178 t 02 0.1614 0.5159 0.1614 0.1614 c 03 0.2045 0.2913 0.0508 0.4535 y 04 0.9254 0.0001 0.0744 0.0001 A 05 0.0001 0.0001 0.9996 0.0001 G 06 0.9996 0.0001 0.0001 0.0001 A 07 0.0001 0.0001 0.0001 0.9996 T 08 0.0001 0.9996 0.0001 0.0001 C 09 0.0227 0.0970 0.0227 0.8576 T 10 0.2940 0.0888 0.4519 0.1654 r 11 0.2959 0.1993 0.1993 0.3055 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA9:M0768_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA3/M0769_1.02/CISBP XX ID GATA3:M0769_1.02:CISBP XX NA GATA3 XX DE GATA3 XX OS Arabidopsis thaliana XX BF 7511; XX P0 A C G T 01 0.2602 0.2331 0.2331 0.2736 w 02 0.2098 0.3161 0.1937 0.2804 y 03 0.2512 0.2462 0.2462 0.2563 w 04 0.3545 0.2260 0.2150 0.2045 a 05 0.1076 0.0847 0.6709 0.1368 g 06 0.8752 0.0002 0.0001 0.1245 A 07 0.0698 0.0705 0.0004 0.8592 T 08 0.0573 0.4633 0.2040 0.2754 y 09 0.1677 0.2631 0.2069 0.3623 y 10 0.3297 0.1791 0.3431 0.1481 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA3:M0769_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA7/M0770_1.02/CISBP XX ID GATA7:M0770_1.02:CISBP XX NA GATA7 XX DE GATA7 XX OS Arabidopsis thaliana XX BF 11102; XX P0 A C G T 01 0.3283 0.1690 0.2195 0.2831 w 02 0.2119 0.3286 0.1426 0.3169 y 03 0.4396 0.1865 0.2269 0.1470 a 04 0.2068 0.1631 0.4797 0.1504 g 05 0.7394 0.0258 0.0346 0.2001 A 06 0.2001 0.0346 0.0258 0.7394 T 07 0.1504 0.4797 0.1631 0.2068 c 08 0.1470 0.2269 0.1865 0.4396 t 09 0.3169 0.1426 0.3286 0.2119 r 10 0.2831 0.2195 0.1690 0.3283 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA7:M0770_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA27/M0771_1.02/CISBP XX ID GATA27:M0771_1.02:CISBP XX NA GATA27 XX DE GATA27 XX OS Arabidopsis thaliana XX BF 11103; XX P0 A C G T 01 0.2415 0.2979 0.2017 0.2590 y 02 0.3084 0.3692 0.1428 0.1797 m 03 0.0778 0.0272 0.7304 0.1646 G 04 0.8601 0.0043 0.0003 0.1352 A 05 0.0517 0.1750 0.0423 0.7311 T 06 0.1056 0.4197 0.2374 0.2374 c 07 0.3289 0.1751 0.2666 0.2294 r 08 0.2832 0.2296 0.2206 0.2667 w 09 0.2863 0.2079 0.2415 0.2643 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA27:M0771_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os06g48534/M0790_1.02/CISBP XX ID LOC_Os06g48534:M0790_1.02:CISBP XX NA LOC_Os06g48534 XX DE LOC_Os06g48534 XX OS Oryza sativa XX BF 11124; XX P0 A C G T 01 0.2666 0.2388 0.2485 0.2461 a 02 0.2756 0.2494 0.2256 0.2494 a 03 0.2559 0.1568 0.4757 0.1116 r 04 0.4837 0.1090 0.2240 0.1834 a 05 0.0002 0.0015 0.0022 0.9962 T 06 0.2367 0.3392 0.2590 0.1651 s 07 0.2284 0.2449 0.2449 0.2817 t 08 0.2584 0.2053 0.2856 0.2508 d 09 0.2421 0.2326 0.2784 0.2469 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os06g48534:M0790_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0300010106/M0807_1.02/CISBP XX ID 0300010106:M0807_1.02:CISBP XX NA 0300010106 XX DE 0300010106 XX OS Ostreococcus tauri XX BF 11129; XX P0 A C G T 01 0.2955 0.2839 0.1638 0.2569 h 02 0.1531 0.0616 0.6660 0.1193 g 03 0.8011 0.0298 0.0719 0.0971 A 04 0.0362 0.0015 0.0006 0.9617 T 05 0.1756 0.6444 0.1250 0.0551 c 06 0.2470 0.1706 0.2421 0.3402 t 07 0.2755 0.2233 0.2493 0.2518 w 08 0.2466 0.1999 0.2753 0.2781 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0300010106:M0807_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_07.0001000042/M0808_1.02/CISBP XX ID fgenesh1_pg.C_Chr_07.0001000042:M0808_1.02:CISBP XX NA fgenesh1_pg.C_Chr_07.0001000042 XX DE fgenesh1_pg.C_Chr_07.0001000042 XX OS Ostreococcus tauri XX BF 11130; XX P0 A C G T 01 0.3202 0.2001 0.2986 0.1811 r 02 0.1614 0.1475 0.5691 0.1220 g 03 0.8801 0.0035 0.0053 0.1111 A 04 0.0858 0.0008 0.0043 0.9091 T 05 0.0901 0.7283 0.1078 0.0738 C 06 0.2720 0.1031 0.0772 0.5477 w 07 0.2065 0.2959 0.2351 0.2625 y 08 0.2597 0.2280 0.2421 0.2702 w 09 0.2808 0.2276 0.2299 0.2618 w 10 0.2805 0.2297 0.2229 0.2669 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_07.0001000042:M0808_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RGL2/M0821_1.02/CISBP XX ID RGL2:M0821_1.02:CISBP XX NA RGL2 XX DE RGL2 XX OS Arabidopsis thaliana XX BF 11143; XX P0 A C G T 01 0.2044 0.2599 0.1850 0.3508 y 02 0.0835 0.0024 0.7460 0.1681 G 03 0.0167 0.0003 0.0022 0.9807 T 04 0.7894 0.0051 0.0108 0.1947 A 05 0.0739 0.7229 0.1388 0.0643 C 06 0.1683 0.0281 0.7175 0.0861 G 07 0.0550 0.0898 0.7264 0.1288 G 08 0.4020 0.2366 0.0972 0.2642 w 09 0.2946 0.2859 0.1734 0.2461 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RGL2:M0821_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC KNAT6/M0840_1.02/CISBP XX ID KNAT6:M0840_1.02:CISBP XX NA KNAT6 XX DE KNAT6 XX OS Arabidopsis thaliana XX BF 11162; XX P0 A C G T 01 0.3876 0.1673 0.2214 0.2236 a 02 0.1984 0.3081 0.3405 0.1530 s 03 0.3403 0.3799 0.1343 0.1455 m 04 0.1507 0.3004 0.1310 0.4179 y 05 0.1202 0.0044 0.8114 0.0640 G 06 0.0832 0.0000 0.0001 0.9168 T 07 0.1031 0.7768 0.0407 0.0795 C 08 0.5880 0.0749 0.1393 0.1977 a 09 0.2945 0.2858 0.2014 0.2182 m 10 0.2854 0.2407 0.2052 0.2687 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=KNAT6:M0840_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HB-1/M0841_1.02/CISBP XX ID HB-1:M0841_1.02:CISBP XX NA HB-1 XX DE HB-1 XX OS Arabidopsis thaliana XX BF 11163; XX P0 A C G T 01 0.2313 0.2222 0.1765 0.3700 t 02 0.2146 0.1077 0.5279 0.1498 g 03 0.2000 0.1809 0.0183 0.6008 t 04 0.0431 0.0031 0.1857 0.7681 T 05 0.0804 0.7332 0.0992 0.0871 C 06 0.4046 0.0850 0.1294 0.3810 w 07 0.2857 0.0463 0.0323 0.6358 w 08 0.2991 0.2733 0.2761 0.1515 v XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HB-1:M0841_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EDT1/M0842_1.02/CISBP XX ID EDT1:M0842_1.02:CISBP XX NA EDT1 XX DE EDT1 XX OS Arabidopsis thaliana XX BF 11164; XX P0 A C G T 01 0.2088 0.3920 0.1146 0.2846 y 02 0.5821 0.2564 0.0671 0.0943 m 03 0.4946 0.0267 0.0697 0.4090 w 04 0.0573 0.0106 0.0092 0.9230 T 05 0.3151 0.0548 0.0326 0.5976 w 06 0.9221 0.0281 0.0428 0.0069 A 07 0.8325 0.0394 0.0230 0.1051 A 08 0.1345 0.0256 0.0012 0.8387 T 09 0.0813 0.0255 0.7564 0.1368 G 10 0.2199 0.5044 0.0491 0.2266 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EDT1:M0842_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB6/M0843_1.02/CISBP XX ID ATHB6:M0843_1.02:CISBP XX NA ATHB6 XX DE ATHB6 XX OS Arabidopsis thaliana XX BF 11165; XX P0 A C G T 01 0.1775 0.2518 0.2868 0.2839 b 02 0.1486 0.5239 0.0849 0.2426 c 03 0.7452 0.0894 0.0732 0.0922 A 04 0.8862 0.0713 0.0006 0.0420 A 05 0.0205 0.0064 0.0011 0.9720 T 06 0.3563 0.3097 0.1285 0.2055 m 07 0.9245 0.0053 0.0384 0.0318 A 08 0.1065 0.0659 0.1300 0.6976 T 09 0.2336 0.1114 0.2660 0.3890 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB6:M0843_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB22/M0844_1.02/CISBP XX ID ATHB22:M0844_1.02:CISBP XX NA ATHB22 XX DE ATHB22 XX OS Arabidopsis thaliana XX BF 11166; XX P0 A C G T 01 0.2275 0.2275 0.2275 0.3174 t 02 0.3628 0.1812 0.1812 0.2749 w 03 0.6991 0.1003 0.1003 0.1003 A 04 0.1549 0.0510 0.0510 0.7432 T 05 0.8273 0.0234 0.0234 0.1259 A 06 0.8969 0.0002 0.1027 0.0002 A 07 0.0002 0.0002 0.0002 0.9994 T 08 0.5042 0.0002 0.0002 0.4954 w 09 0.2247 0.1252 0.0227 0.6275 t 10 0.5925 0.0690 0.0690 0.2694 w 11 0.3452 0.1499 0.1499 0.3551 w 12 0.2920 0.1992 0.1992 0.3095 w 13 0.2268 0.2268 0.2268 0.3196 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB22:M0844_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-4/M0845_1.02/CISBP XX ID ATHB-4:M0845_1.02:CISBP XX NA ATHB-4 XX DE ATHB-4 XX OS Arabidopsis thaliana XX BF 11167; XX P0 A C G T 01 0.1691 0.3474 0.2706 0.2129 s 02 0.1126 0.4848 0.0326 0.3701 y 03 0.7725 0.0708 0.0303 0.1264 A 04 0.7917 0.0932 0.0481 0.0670 A 05 0.1123 0.0434 0.0709 0.7734 T 06 0.1289 0.5892 0.1410 0.1410 c 07 0.7490 0.0597 0.0782 0.1132 A 08 0.2313 0.1257 0.1126 0.5304 t 09 0.2175 0.1968 0.2049 0.3808 t 10 0.2994 0.1798 0.2877 0.2332 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-4:M0845_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB7/M0846_1.02/CISBP XX ID ATHB7:M0846_1.02:CISBP XX NA ATHB7 XX DE ATHB7 XX OS Arabidopsis thaliana XX BF 11168; XX P0 A C G T 01 0.1516 0.3384 0.1516 0.3584 y 02 0.0266 0.8283 0.0266 0.1184 C 03 0.9998 0.0001 0.0001 0.0001 A 04 0.9998 0.0001 0.0001 0.0001 A 05 0.0001 0.0001 0.0001 0.9998 T 06 0.0001 0.9998 0.0001 0.0001 C 07 0.9998 0.0001 0.0001 0.0001 A 08 0.2913 0.0001 0.0001 0.7086 W 09 0.1834 0.0984 0.1905 0.5277 t 10 0.2234 0.2234 0.3297 0.2234 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB7:M0846_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT3.1/M0847_1.02/CISBP XX ID HAT3.1:M0847_1.02:CISBP XX NA HAT3.1 XX DE HAT3.1 XX OS Arabidopsis thaliana XX BF 11169; XX P0 A C G T 01 0.1616 0.3286 0.2664 0.2434 s 02 0.0862 0.1603 0.0699 0.6835 T 03 0.4590 0.0873 0.3611 0.0927 r 04 0.4403 0.3678 0.0181 0.1737 m 05 0.7975 0.1193 0.0040 0.0792 A 06 0.0826 0.8242 0.0138 0.0794 C 07 0.0777 0.6347 0.1294 0.1581 c 08 0.3096 0.2435 0.2034 0.2435 a 09 0.2631 0.2766 0.1892 0.2711 h 10 0.2269 0.2717 0.2158 0.2856 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT3.1:M0847_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT3/M0848_1.02/CISBP XX ID HAT3:M0848_1.02:CISBP XX NA HAT3 XX DE HAT3 XX OS Arabidopsis thaliana XX BF 11170; XX P0 A C G T 01 0.1242 0.3549 0.3376 0.1834 s 02 0.0589 0.5427 0.0273 0.3711 y 03 0.8460 0.0688 0.0129 0.0723 A 04 0.8548 0.0629 0.0282 0.0541 A 05 0.0462 0.0618 0.0001 0.8919 T 06 0.1088 0.7574 0.0563 0.0775 C 07 0.8156 0.0349 0.0582 0.0913 A 08 0.3252 0.1567 0.1208 0.3972 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT3:M0848_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-12/M0849_1.02/CISBP XX ID ATHB-12:M0849_1.02:CISBP XX NA ATHB-12 XX DE ATHB-12 XX OS Arabidopsis thaliana XX BF 8867; XX P0 A C G T 01 0.1002 0.1770 0.4674 0.2554 k 02 0.3261 0.1906 0.0757 0.4076 w 03 0.6211 0.0440 0.0214 0.3135 w 04 0.4039 0.0918 0.0315 0.4727 w 05 0.3260 0.1619 0.0101 0.5020 w 06 0.5020 0.0101 0.1619 0.3260 w 07 0.4727 0.0315 0.0918 0.4039 w 08 0.3135 0.0214 0.0440 0.6211 w 09 0.4076 0.0757 0.1906 0.3261 w 10 0.2554 0.4674 0.1770 0.1002 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-12:M0849_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANL2/M0850_1.02/CISBP XX ID ANL2:M0850_1.02:CISBP XX NA ANL2 XX DE ANL2 XX OS Arabidopsis thaliana XX BF 11171; XX P0 A C G T 01 0.3063 0.2312 0.2312 0.2312 a 02 0.1654 0.1654 0.1654 0.5038 t 03 0.6690 0.2076 0.0617 0.0617 a 04 0.9243 0.0001 0.0001 0.0755 A 05 0.0001 0.0001 0.0001 0.9997 T 06 0.2609 0.0001 0.0001 0.7389 W 07 0.9997 0.0001 0.0001 0.0001 A 08 0.9217 0.0001 0.0001 0.0781 A 09 0.0189 0.0189 0.0189 0.9434 T 10 0.0847 0.0847 0.7459 0.0847 G 11 0.3200 0.3032 0.1884 0.1884 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANL2:M0850_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT1/M0851_1.02/CISBP XX ID HAT1:M0851_1.02:CISBP XX NA HAT1 XX DE HAT1 XX OS Arabidopsis thaliana XX BF 11172; XX P0 A C G T 01 0.1491 0.3739 0.3280 0.1491 s 02 0.0691 0.5060 0.0691 0.3558 y 03 0.9996 0.0001 0.0001 0.0001 A 04 0.9996 0.0001 0.0001 0.0001 A 05 0.0001 0.0001 0.0001 0.9996 T 06 0.0001 0.9996 0.0001 0.0001 C 07 0.9996 0.0001 0.0001 0.0001 A 08 0.0976 0.0001 0.0001 0.9021 T 09 0.1011 0.1011 0.2856 0.5123 k 10 0.3492 0.1810 0.2888 0.1810 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT1:M0851_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATML1/M0852_1.02/CISBP XX ID ATML1:M0852_1.02:CISBP XX NA ATML1 XX DE ATML1 XX OS Arabidopsis thaliana XX BF 11173; XX P0 A C G T 01 0.3212 0.2765 0.1891 0.2132 m 02 0.3206 0.1657 0.2237 0.2901 w 03 0.1396 0.1467 0.1066 0.6071 t 04 0.3173 0.1944 0.1412 0.3472 w 05 0.6320 0.1289 0.1483 0.0908 a 06 0.4316 0.2018 0.1200 0.2465 a 07 0.0744 0.1689 0.1369 0.6198 t 08 0.2971 0.1138 0.4754 0.1138 r 09 0.1789 0.3864 0.1807 0.2539 y 10 0.2178 0.2608 0.2970 0.2244 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATML1:M0852_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATWOX13/M0853_1.02/CISBP XX ID ATWOX13:M0853_1.02:CISBP XX NA ATWOX13 XX DE ATWOX13 XX OS Arabidopsis thaliana XX BF 8899; XX P0 A C G T 01 0.0009 0.0915 0.0915 0.8161 T 02 0.0008 0.8443 0.0008 0.1541 C 03 0.9980 0.0007 0.0007 0.0007 A 04 0.9980 0.0007 0.0007 0.0007 A 05 0.0007 0.0007 0.0007 0.9980 T 06 0.0672 0.7985 0.0007 0.1336 C 07 0.9266 0.0007 0.0007 0.0719 A 08 0.5986 0.1006 0.2002 0.1006 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATWOX13:M0853_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB16/M0854_1.02/CISBP XX ID ATHB16:M0854_1.02:CISBP XX NA ATHB16 XX DE ATHB16 XX OS Arabidopsis thaliana XX BF 11174; XX P0 A C G T 01 0.0719 0.2144 0.0007 0.7130 T 02 0.9985 0.0005 0.0005 0.0005 A 03 0.9986 0.0005 0.0005 0.0005 A 04 0.0005 0.0005 0.0005 0.9986 T 05 0.5449 0.3181 0.1366 0.0005 m 06 0.9986 0.0005 0.0005 0.0005 A 07 0.0005 0.0005 0.0005 0.9986 T 08 0.0672 0.0007 0.0672 0.8650 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB16:M0854_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC KNAT3/M0855_1.02/CISBP XX ID KNAT3:M0855_1.02:CISBP XX NA KNAT3 XX DE KNAT3 XX OS Arabidopsis thaliana XX BF 11175; XX P0 A C G T 01 0.3884 0.1677 0.2286 0.2153 a 02 0.1948 0.3444 0.3342 0.1267 s 03 0.2889 0.4576 0.1554 0.0981 m 04 0.1226 0.2419 0.1722 0.4634 t 05 0.0797 0.0002 0.8879 0.0321 G 06 0.0253 0.0000 0.0002 0.9744 T 07 0.0580 0.8722 0.0335 0.0363 C 08 0.5503 0.1317 0.1850 0.1330 a 09 0.2524 0.2961 0.1888 0.2627 h 10 0.2820 0.2403 0.2174 0.2603 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=KNAT3:M0855_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os03g03164/M1107_1.02/CISBP XX ID LOC_Os03g03164:M1107_1.02:CISBP XX NA LOC_Os03g03164 XX DE LOC_Os03g03164 XX OS Oryza sativa XX BF 11255; XX P0 A C G T 01 0.2808 0.2752 0.2209 0.2231 m 02 0.2489 0.2489 0.1826 0.3196 t 03 0.2480 0.0978 0.4846 0.1696 g 04 0.2157 0.2882 0.0256 0.4705 y 05 0.2153 0.3768 0.1948 0.2131 c 06 0.3405 0.2352 0.2260 0.1984 a 07 0.2821 0.2242 0.2604 0.2333 r 08 0.2573 0.2376 0.2652 0.2399 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os03g03164:M1107_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os09g35910/M1108_1.02/CISBP XX ID LOC_Os09g35910:M1108_1.02:CISBP XX NA LOC_Os09g35910 XX DE LOC_Os09g35910 XX OS Oryza sativa XX BF 11256; XX P0 A C G T 01 0.2972 0.2180 0.2533 0.2315 r 02 0.2756 0.2325 0.2325 0.2595 w 03 0.1063 0.3748 0.1899 0.3291 y 04 0.0501 0.6418 0.0198 0.2884 y 05 0.8729 0.0542 0.0229 0.0500 A 06 0.9626 0.0285 0.0027 0.0062 A 07 0.0072 0.0007 0.0034 0.9886 T 08 0.0145 0.9582 0.0086 0.0186 C 09 0.7888 0.0294 0.0995 0.0823 A 10 0.3994 0.1657 0.1240 0.3110 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os09g35910:M1108_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Os02g0706600/M1116_1.02/CISBP XX ID Os02g0706600:M1116_1.02:CISBP XX NA Os02g0706600 XX DE Os02g0706600 XX OS Oryza sativa XX BF 11263; XX P0 A C G T 01 0.2536 0.2831 0.2536 0.2097 v 02 0.2142 0.3163 0.1862 0.2834 y 03 0.1884 0.1076 0.0263 0.6777 t 04 0.6905 0.0699 0.1394 0.1002 A 05 0.7538 0.1116 0.0423 0.0923 A 06 0.1541 0.1979 0.1466 0.5015 t 07 0.1817 0.3808 0.1872 0.2502 y 08 0.3054 0.2577 0.2174 0.2196 m 09 0.2635 0.3001 0.2073 0.2291 m 10 0.2501 0.2332 0.2764 0.2403 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Os02g0706600:M1116_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PRH/M1167_1.02/CISBP XX ID PRH:M1167_1.02:CISBP XX NA PRH XX DE PRH XX OS Petroselinum crispum XX BF 11293; XX P0 A C G T 01 0.9926 0.0025 0.0025 0.0025 A 02 0.0014 0.0014 0.0014 0.9957 T 03 0.9957 0.0014 0.0014 0.0014 A 04 0.0014 0.0014 0.0014 0.9957 T 05 0.9957 0.0014 0.0014 0.0014 A 06 0.1435 0.0014 0.0014 0.8537 T 07 0.4983 0.0017 0.0017 0.4983 w 08 0.7956 0.0020 0.0020 0.2004 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PRH:M1167_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_gwp_gw1.C_70211/M1195_1.02/CISBP XX ID estExt_gwp_gw1.C_70211:M1195_1.02:CISBP XX NA estExt_gwp_gw1.C_70211 XX DE estExt_gwp_gw1.C_70211 XX OS Physcomitrella patens XX BF 11321; XX P0 A C G T 01 0.1528 0.4545 0.1143 0.2784 y 02 0.6623 0.1805 0.1538 0.0034 a 03 0.8881 0.1088 0.0001 0.0030 A 04 0.0000 0.0000 0.0000 1.0000 T 05 0.3130 0.3258 0.1788 0.1824 m 06 0.9260 0.0000 0.0738 0.0002 A 07 0.1269 0.1445 0.1308 0.5978 t 08 0.2171 0.1133 0.3081 0.3615 k 09 0.2271 0.2586 0.3005 0.2139 s 10 0.2316 0.2435 0.3255 0.1994 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_gwp_gw1.C_70211:M1195_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GRMZM2G038252/M1209_1.02/CISBP XX ID GRMZM2G038252:M1209_1.02:CISBP XX NA GRMZM2G038252 XX DE GRMZM2G038252 XX OS Zea mays XX BF 11334; XX P0 A C G T 01 0.1095 0.2344 0.1563 0.4998 t 02 0.0569 0.7725 0.0001 0.1705 C 03 0.9897 0.0101 0.0001 0.0001 A 04 0.9797 0.0001 0.0201 0.0001 A 05 0.0101 0.0001 0.0001 0.9897 T 06 0.0001 0.6998 0.0001 0.3000 Y 07 0.9471 0.0106 0.0001 0.0422 A 08 0.5506 0.1015 0.2029 0.1450 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GRMZM2G038252:M1209_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GRMZM2G087741/M1210_1.02/CISBP XX ID GRMZM2G087741:M1210_1.02:CISBP XX NA GRMZM2G087741 XX DE GRMZM2G087741 XX OS Zea mays XX BF 11335; XX P0 A C G T 01 0.3501 0.2670 0.1914 0.1914 m 02 0.1751 0.2544 0.3973 0.1732 s 03 0.0002 0.0002 0.0002 0.9995 T 04 0.0002 0.0946 0.9051 0.0002 G 05 0.9995 0.0002 0.0002 0.0002 A 06 0.0002 0.9051 0.0002 0.0946 C 07 0.4568 0.0002 0.5429 0.0002 r 08 0.0946 0.0002 0.4568 0.4484 k 09 0.0587 0.7405 0.1421 0.0587 C 10 0.3689 0.1507 0.1507 0.3298 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GRMZM2G087741:M1210_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GRMZM2G135447/M1211_1.02/CISBP XX ID GRMZM2G135447:M1211_1.02:CISBP XX NA GRMZM2G135447 XX DE GRMZM2G135447 XX OS Zea mays XX BF 11336; XX P0 A C G T 01 0.0963 0.3461 0.5382 0.0194 s 02 0.3478 0.5650 0.0291 0.0581 m 03 0.0401 0.3200 0.0401 0.5998 y 04 0.0001 0.0001 0.9996 0.0001 G 05 0.0264 0.0001 0.0001 0.9733 T 06 0.0001 0.9865 0.0133 0.0001 C 07 0.9380 0.0002 0.0463 0.0155 A 08 0.2857 0.3333 0.1192 0.2619 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GRMZM2G135447:M1211_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Q1T448/M1215_1.02/CISBP XX ID Q1T448:M1215_1.02:CISBP XX NA Q1T448 XX DE Q1T448 XX OS Medicago truncatula XX BF 11340; XX P0 A C G T 01 0.2523 0.2600 0.2329 0.2548 h 02 0.2406 0.2939 0.1970 0.2686 y 03 0.3696 0.1373 0.2428 0.2502 w 04 0.2483 0.1992 0.1349 0.4176 t 05 0.2314 0.1491 0.1296 0.4899 t 06 0.7023 0.0670 0.0254 0.2053 A 07 0.1364 0.1247 0.6238 0.1151 g 08 0.2393 0.1637 0.2254 0.3716 t 09 0.3301 0.4281 0.0965 0.1454 m 10 0.1849 0.4073 0.1264 0.2814 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Q1T448:M1215_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LBD4/M1274_1.02/CISBP XX ID LBD4:M1274_1.02:CISBP XX NA LBD4 XX DE LBD4 XX OS Arabidopsis thaliana XX BF 11387; XX P0 A C G T 01 0.3897 0.2035 0.2858 0.1210 r 02 0.4727 0.1109 0.2443 0.1722 a 03 0.2546 0.3541 0.1316 0.2597 h 04 0.1973 0.3704 0.3667 0.0657 s 05 0.0700 0.7638 0.1438 0.0224 C 06 0.0650 0.1403 0.7757 0.0190 G 07 0.0928 0.2282 0.6393 0.0397 g 08 0.2135 0.3000 0.3556 0.1308 s 09 0.2789 0.1761 0.3690 0.1761 r 10 0.3025 0.1798 0.2936 0.2241 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LBD4:M1274_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC gw1.238.28.1/M1275_1.02/CISBP XX ID gw1.238.28.1:M1275_1.02:CISBP XX NA gw1.238.28.1 XX DE gw1.238.28.1 XX OS Physcomitrella patens XX BF 11388; XX P0 A C G T 01 0.3983 0.1826 0.2489 0.1702 a 02 0.4150 0.1482 0.1774 0.2594 w 03 0.3486 0.1697 0.1663 0.3154 w 04 0.2932 0.1778 0.1253 0.4037 w 05 0.1787 0.2830 0.1601 0.3782 y 06 0.2660 0.3030 0.3416 0.0894 v 07 0.1348 0.5982 0.1308 0.1362 c 08 0.0014 0.0483 0.9503 0.0000 G 09 0.0305 0.2563 0.6304 0.0828 s 10 0.3015 0.2082 0.2256 0.2647 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=gw1.238.28.1:M1275_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GT-1/M1276_1.02/CISBP XX ID GT-1:M1276_1.02:CISBP XX NA GT-1 XX DE GT-1 XX OS Arabidopsis thaliana XX BF 11389; XX P0 A C G T 01 0.0005 0.1502 0.6492 0.2001 g 02 0.0003 0.0669 0.0003 0.9324 T 03 0.0297 0.0003 0.0003 0.9697 T 04 0.9991 0.0003 0.0003 0.0003 A 05 0.9706 0.0288 0.0003 0.0003 A 06 0.0297 0.9697 0.0003 0.0003 C 07 0.0003 0.9386 0.0003 0.0608 C 08 0.6244 0.1668 0.1252 0.0836 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GT-1:M1276_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G25990/M1277_1.02/CISBP XX ID AT3G25990:M1277_1.02:CISBP XX NA AT3G25990 XX DE AT3G25990 XX OS Arabidopsis thaliana XX BF 11390; XX P0 A C G T 01 0.1807 0.2834 0.1862 0.3496 y 02 0.2342 0.1586 0.1211 0.4861 t 03 0.5111 0.0991 0.1736 0.2163 a 04 0.8768 0.0008 0.0002 0.1223 A 05 0.0551 0.7425 0.0667 0.1356 C 06 0.1365 0.4531 0.0943 0.3161 y 07 0.3231 0.2781 0.2123 0.1864 m 08 0.2549 0.2474 0.2601 0.2377 r 09 0.3135 0.2165 0.2491 0.2209 a 10 0.2442 0.2567 0.3012 0.1979 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G25990:M1277_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G47660/M1278_1.02/CISBP XX ID AT5G47660:M1278_1.02:CISBP XX NA AT5G47660 XX DE AT5G47660 XX OS Arabidopsis thaliana XX BF 11391; XX P0 A C G T 01 0.4951 0.0049 0.0049 0.4951 w 02 0.0049 0.0049 0.0049 0.9853 T 03 0.0049 0.0049 0.0049 0.9853 T 04 0.9901 0.0033 0.0033 0.0033 A 05 0.0033 0.9901 0.0033 0.0033 C 06 0.0049 0.9853 0.0049 0.0049 C 07 0.0049 0.0049 0.9853 0.0049 G 08 0.0049 0.4951 0.0049 0.4951 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G47660:M1278_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002876896.1/M1282_1.02/CISBP XX ID XM_002876896.1:M1282_1.02:CISBP XX NA XM_002876896.1 XX DE XM_002876896.1 XX OS Arabidopsis lyrata XX BF 11414; XX P0 A C G T 01 0.2147 0.2147 0.3558 0.2147 g 02 0.2147 0.2147 0.3558 0.2147 g 03 0.1922 0.2822 0.1922 0.3333 y 04 0.1917 0.1957 0.0977 0.5149 t 05 0.7647 0.1407 0.0473 0.0473 A 06 0.9996 0.0001 0.0001 0.0001 A 07 0.0001 0.9996 0.0001 0.0001 C 08 0.0001 0.9996 0.0001 0.0001 C 09 0.0354 0.8938 0.0354 0.0354 C 10 0.0354 0.8938 0.0354 0.0354 C 11 0.0579 0.5478 0.0579 0.3364 y 12 0.2459 0.1525 0.2427 0.3590 t 13 0.2028 0.2028 0.2028 0.3915 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002876896.1:M1282_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GSVIVG00007522001/M1283_1.02/CISBP XX ID GSVIVG00007522001:M1283_1.02:CISBP XX NA GSVIVG00007522001 XX DE GSVIVG00007522001 XX OS Vitis vinifera XX BF 11415; XX P0 A C G T 01 0.0017 0.0017 0.9950 0.0017 G 02 0.0017 0.0017 0.0017 0.9950 T 03 0.0017 0.0017 0.0017 0.9950 T 04 0.9950 0.0017 0.0017 0.0017 A 05 0.9950 0.0017 0.0017 0.0017 A 06 0.0017 0.9950 0.0017 0.0017 C 07 0.0017 0.6639 0.0017 0.3328 y 08 0.4975 0.2500 0.2500 0.0025 v XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GSVIVG00007522001:M1283_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g01380/M1284_1.02/CISBP XX ID LOC_Os02g01380:M1284_1.02:CISBP XX NA LOC_Os02g01380 XX DE LOC_Os02g01380 XX OS Oryza sativa XX BF 11416; XX P0 A C G T 01 0.4774 0.1589 0.2000 0.1637 a 02 0.3035 0.0878 0.1823 0.4264 w 03 0.4792 0.0363 0.0332 0.4513 w 04 0.2124 0.0469 0.0964 0.6444 t 05 0.0031 0.0314 0.0043 0.9611 T 06 0.0577 0.0346 0.0145 0.8932 T 07 0.9712 0.0075 0.0060 0.0153 A 08 0.0287 0.9400 0.0003 0.0311 C 09 0.1425 0.4500 0.0873 0.3203 y 10 0.2501 0.1890 0.4165 0.1443 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g01380:M1284_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os04g40930/M1286_1.02/CISBP XX ID LOC_Os04g40930:M1286_1.02:CISBP XX NA LOC_Os04g40930 XX DE LOC_Os04g40930 XX OS Oryza sativa XX BF 11417; XX P0 A C G T 01 0.1047 0.2680 0.1291 0.4982 y 02 0.1838 0.0690 0.0382 0.7090 T 03 0.7506 0.0345 0.1192 0.0957 A 04 0.9559 0.0367 0.0002 0.0073 A 05 0.0007 0.9642 0.0002 0.0349 C 06 0.0277 0.6464 0.0236 0.3023 y 07 0.3806 0.3148 0.1660 0.1386 m 08 0.2345 0.2515 0.2864 0.2276 s 09 0.4167 0.1644 0.2578 0.1611 r 10 0.1922 0.2701 0.3910 0.1467 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os04g40930:M1286_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002892704.1/M1287_1.02/CISBP XX ID XM_002892704.1:M1287_1.02:CISBP XX NA XM_002892704.1 XX DE XM_002892704.1 XX OS Arabidopsis lyrata XX BF 11418; XX P0 A C G T 01 0.0049 0.0049 0.9853 0.0049 G 02 0.0033 0.0033 0.9901 0.0033 G 03 0.0033 0.0033 0.0033 0.9901 T 04 0.0033 0.0033 0.0033 0.9901 T 05 0.9901 0.0033 0.0033 0.0033 A 06 0.9901 0.0033 0.0033 0.0033 A 07 0.0033 0.9901 0.0033 0.0033 C 08 0.0049 0.9853 0.0049 0.0049 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002892704.1:M1287_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 29929.m004704/M1290_1.02/CISBP XX ID 29929.m004704:M1290_1.02:CISBP XX NA 29929.m004704 XX DE 29929.m004704 XX OS Ricinus communis XX BF 11421; XX P0 A C G T 01 0.1317 0.1659 0.3744 0.3280 k 02 0.2410 0.1243 0.4639 0.1708 g 03 0.1670 0.1654 0.5015 0.1661 g 04 0.1828 0.1246 0.1680 0.5246 t 05 0.2390 0.1984 0.0891 0.4735 t 06 0.4735 0.0891 0.1984 0.2390 a 07 0.5246 0.1680 0.1246 0.1828 a 08 0.1661 0.5015 0.1654 0.1670 c 09 0.1708 0.4639 0.1243 0.2410 c 10 0.3280 0.3744 0.1659 0.1317 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=29929.m004704:M1290_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC cassava13991.valid.m1/M1291_1.02/CISBP XX ID cassava13991.valid.m1:M1291_1.02:CISBP XX NA cassava13991.valid.m1 XX DE cassava13991.valid.m1 XX OS Manihot esculenta XX BF 11422; XX P0 A C G T 01 0.1800 0.2712 0.1970 0.3518 y 02 0.2466 0.1845 0.1541 0.4148 t 03 0.4625 0.1118 0.1843 0.2414 a 04 0.8978 0.0315 0.0006 0.0701 A 05 0.0011 0.8442 0.0123 0.1424 C 06 0.1406 0.5008 0.0971 0.2614 y 07 0.2944 0.3127 0.2014 0.1915 m 08 0.2273 0.2948 0.2390 0.2390 c 09 0.2884 0.2433 0.2610 0.2073 r 10 0.2405 0.2851 0.2908 0.1836 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=cassava13991.valid.m1:M1291_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Glyma11g37390.1/M1292_1.02/CISBP XX ID Glyma11g37390.1:M1292_1.02:CISBP XX NA Glyma11g37390.1 XX DE Glyma11g37390.1 XX OS Glycine max XX BF 11423; XX P0 A C G T 01 0.1249 0.2835 0.1686 0.4230 y 02 0.1876 0.1336 0.0980 0.5809 t 03 0.6433 0.0000 0.1899 0.1668 a 04 1.0000 0.0000 0.0000 0.0000 A 05 0.0470 0.9530 0.0000 0.0000 C 06 0.0000 0.6909 0.0446 0.2645 Y 07 0.3334 0.3268 0.2084 0.1315 m 08 0.2262 0.2791 0.2708 0.2239 s 09 0.3277 0.1988 0.3277 0.1458 r 10 0.1864 0.2753 0.4108 0.1275 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Glyma11g37390.1:M1292_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Medtr3g103160.1/M1293_1.02/CISBP XX ID Medtr3g103160.1:M1293_1.02:CISBP XX NA Medtr3g103160.1 XX DE Medtr3g103160.1 XX OS Medicago truncatula XX BF 11424; XX P0 A C G T 01 0.1278 0.2732 0.1441 0.4550 y 02 0.1673 0.1167 0.0708 0.6452 t 03 0.6612 0.0670 0.1461 0.1257 a 04 0.9168 0.0499 0.0001 0.0331 A 05 0.0176 0.9252 0.0047 0.0525 C 06 0.0575 0.5850 0.0332 0.3243 y 07 0.3516 0.2996 0.2154 0.1333 m 08 0.2382 0.2606 0.2606 0.2406 s 09 0.3542 0.1925 0.2843 0.1690 r 10 0.2062 0.2701 0.3333 0.1904 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Medtr3g103160.1:M1293_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MDP0000164819/M1294_1.02/CISBP XX ID MDP0000164819:M1294_1.02:CISBP XX NA MDP0000164819 XX DE MDP0000164819 XX OS Malus x domestica XX BF 11425; XX P0 A C G T 01 0.0859 0.2503 0.1231 0.5407 y 02 0.1114 0.0576 0.0325 0.7985 T 03 0.8003 0.0237 0.1083 0.0677 A 04 0.9807 0.0180 0.0002 0.0011 A 05 0.0032 0.9783 0.0027 0.0159 C 06 0.0202 0.7105 0.0105 0.2588 Y 07 0.4342 0.2969 0.1730 0.0959 m 08 0.2335 0.2554 0.2632 0.2479 s 09 0.4102 0.1509 0.3009 0.1379 r 10 0.1758 0.2650 0.3953 0.1639 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MDP0000164819:M1294_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK00738.1/M1302_1.02/CISBP XX ID PK00738.1:M1302_1.02:CISBP XX NA PK00738.1 XX DE PK00738.1 XX OS Cannabis sativa XX BF 11432; XX P0 A C G T 01 0.3391 0.1667 0.1684 0.3258 w 02 0.2846 0.2046 0.2401 0.2707 w 03 0.2234 0.2840 0.1132 0.3795 y 04 0.2802 0.0896 0.5815 0.0487 r 05 0.0122 0.0112 0.9626 0.0140 G 06 0.9120 0.0212 0.0555 0.0113 A 07 0.0128 0.0108 0.0034 0.9730 T 08 0.6206 0.1122 0.1078 0.1593 a 09 0.5726 0.0484 0.2305 0.1484 a 10 0.2180 0.2202 0.3666 0.1953 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK00738.1:M1302_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK02532.1/M1303_1.02/CISBP XX ID PK02532.1:M1303_1.02:CISBP XX NA PK02532.1 XX DE PK02532.1 XX OS Cannabis sativa XX BF 11433; XX P0 A C G T 01 0.2500 0.2500 0.2500 0.2500 n 02 0.9950 0.0017 0.0017 0.0017 A 03 0.0012 0.0012 0.9963 0.0012 G 04 0.9963 0.0012 0.0012 0.0012 A 05 0.0012 0.0012 0.0012 0.9963 T 06 0.9963 0.0012 0.0012 0.0012 A 07 0.0012 0.0012 0.0012 0.9963 T 08 0.0012 0.0012 0.0012 0.9963 T 09 0.4975 0.0025 0.0025 0.4975 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK02532.1:M1303_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK06103.1/M1304_1.02/CISBP XX ID PK06103.1:M1304_1.02:CISBP XX NA PK06103.1 XX DE PK06103.1 XX OS Cannabis sativa XX BF 11434; XX P0 A C G T 01 0.0020 0.7956 0.0020 0.2004 C 02 0.0014 0.0014 0.0014 0.9957 T 03 0.9957 0.0014 0.0014 0.0014 A 04 0.0014 0.0014 0.9957 0.0014 G 05 0.0014 0.0014 0.9957 0.0014 G 06 0.0014 0.0014 0.9957 0.0014 G 07 0.0014 0.9957 0.0014 0.0014 C 08 0.7956 0.0020 0.0020 0.2004 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK06103.1:M1304_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK06182.1/M1305_1.02/CISBP XX ID PK06182.1:M1305_1.02:CISBP XX NA PK06182.1 XX DE PK06182.1 XX OS Cannabis sativa XX BF 11435; XX P0 A C G T 01 0.2471 0.1138 0.1157 0.5233 t 02 0.0615 0.0831 0.0275 0.8278 T 03 0.9855 0.0000 0.0035 0.0111 A 04 0.0206 0.9669 0.0069 0.0056 C 05 0.0057 0.9785 0.0037 0.0121 C 06 0.0676 0.0114 0.0029 0.9181 T 07 0.9617 0.0000 0.0016 0.0367 A 08 0.0420 0.9555 0.0015 0.0009 C 09 0.0134 0.9027 0.0055 0.0784 C 10 0.2006 0.1867 0.3190 0.2937 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK06182.1:M1305_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK08316.1/M1306_1.02/CISBP XX ID PK08316.1:M1306_1.02:CISBP XX NA PK08316.1 XX DE PK08316.1 XX OS Cannabis sativa XX BF 11436; XX P0 A C G T 01 0.2934 0.1967 0.2308 0.2791 w 02 0.4198 0.1454 0.1776 0.2572 w 03 0.5176 0.1706 0.1559 0.1559 a 04 0.5603 0.1250 0.1981 0.1166 a 05 0.2515 0.0437 0.1224 0.5825 w 06 0.8764 0.0022 0.0502 0.0712 A 07 0.1012 0.0468 0.0502 0.8017 T 08 0.0910 0.7968 0.0688 0.0434 C 09 0.1958 0.2059 0.1754 0.4229 t 10 0.2619 0.2210 0.2418 0.2753 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK08316.1:M1306_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK10342.1/M1307_1.02/CISBP XX ID PK10342.1:M1307_1.02:CISBP XX NA PK10342.1 XX DE PK10342.1 XX OS Cannabis sativa XX BF 11437; XX P0 A C G T 01 0.1581 0.2631 0.5783 0.0005 s 02 0.0004 0.0004 0.9987 0.0004 G 03 0.6515 0.3043 0.0004 0.0438 m 04 0.9987 0.0004 0.0004 0.0004 A 05 0.0004 0.0004 0.0004 0.9987 T 06 0.1306 0.8685 0.0004 0.0004 C 07 0.0005 0.0005 0.0005 0.9986 T 08 0.2666 0.1336 0.0672 0.5326 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK10342.1:M1307_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK14402.1/M1308_1.02/CISBP XX ID PK14402.1:M1308_1.02:CISBP XX NA PK14402.1 XX DE PK14402.1 XX OS Cannabis sativa XX BF 11438; XX P0 A C G T 01 0.3002 0.1964 0.3070 0.1964 r 02 0.2355 0.1250 0.2197 0.4198 t 03 0.5754 0.0471 0.1419 0.2356 a 04 0.0002 0.0002 0.8889 0.1107 G 05 0.9995 0.0002 0.0002 0.0002 A 06 0.0002 0.0002 0.0002 0.9995 T 07 0.0002 0.0949 0.0002 0.9047 T 08 0.0002 0.9995 0.0002 0.0002 C 09 0.0538 0.6469 0.2456 0.0538 c 10 0.1252 0.2185 0.4352 0.2211 g 11 0.2031 0.2964 0.2031 0.2975 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK14402.1:M1308_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK17526.1/M1309_1.02/CISBP XX ID PK17526.1:M1309_1.02:CISBP XX NA PK17526.1 XX DE PK17526.1 XX OS Cannabis sativa XX BF 11439; XX P0 A C G T 01 0.2938 0.1989 0.1989 0.3084 w 02 0.1223 0.1223 0.1223 0.6330 t 03 0.0002 0.0002 0.9993 0.0002 G 04 0.0002 0.0002 0.9993 0.0002 G 05 0.9993 0.0002 0.0002 0.0002 A 06 0.0002 0.0002 0.0002 0.9993 T 07 0.9993 0.0002 0.0002 0.0002 A 08 0.7166 0.0002 0.0944 0.1888 A 09 0.1608 0.2398 0.3522 0.2473 g 10 0.3156 0.2215 0.3350 0.1279 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK17526.1:M1309_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK19779.1/M1310_1.02/CISBP XX ID PK19779.1:M1310_1.02:CISBP XX NA PK19779.1 XX DE PK19779.1 XX OS Cannabis sativa XX BF 11440; XX P0 A C G T 01 0.2568 0.2418 0.2394 0.2620 w 02 0.3659 0.1835 0.2028 0.2477 a 03 0.1114 0.0978 0.5354 0.2554 k 04 0.7218 0.0405 0.1400 0.0977 A 05 0.0006 0.0043 0.0003 0.9948 T 06 0.2522 0.2149 0.1412 0.3916 w 07 0.1074 0.7397 0.0685 0.0845 C 08 0.1997 0.3039 0.2297 0.2668 y 09 0.2520 0.2675 0.2570 0.2235 v 10 0.2432 0.2688 0.2245 0.2635 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK19779.1:M1310_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK23829.1/M1311_1.02/CISBP XX ID PK23829.1:M1311_1.02:CISBP XX NA PK23829.1 XX DE PK23829.1 XX OS Cannabis sativa XX BF 11441; XX P0 A C G T 01 0.1853 0.3332 0.0004 0.4811 y 02 0.0297 0.0003 0.9697 0.0003 G 03 0.0003 0.0003 0.9992 0.0003 G 04 0.9992 0.0003 0.0003 0.0003 A 05 0.0003 0.0003 0.0003 0.9992 T 06 0.9992 0.0003 0.0003 0.0003 A 07 0.7806 0.0003 0.0939 0.1252 A 08 0.0438 0.3477 0.3477 0.2609 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK23829.1:M1311_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK27213.1/M1312_1.02/CISBP XX ID PK27213.1:M1312_1.02:CISBP XX NA PK27213.1 XX DE PK27213.1 XX OS Cannabis sativa XX BF 11442; XX P0 A C G T 01 0.2849 0.1728 0.1909 0.3514 w 02 0.2764 0.2476 0.2332 0.2427 a 03 0.2808 0.2393 0.2101 0.2698 w 04 0.3003 0.1665 0.3780 0.1552 r 05 0.0501 0.0435 0.8488 0.0576 G 06 0.8048 0.0525 0.0947 0.0480 A 07 0.0455 0.0380 0.0016 0.9148 T 08 0.5760 0.1163 0.1324 0.1752 a 09 0.5249 0.0754 0.2335 0.1662 a 10 0.1982 0.2495 0.3540 0.1982 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK27213.1:M1312_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK28565.1/M1313_1.02/CISBP XX ID PK28565.1:M1313_1.02:CISBP XX NA PK28565.1 XX DE PK28565.1 XX OS Cannabis sativa XX BF 11443; XX P0 A C G T 01 0.2903 0.0003 0.6124 0.0970 r 02 0.7069 0.0002 0.1464 0.1464 A 03 0.0002 0.8774 0.0002 0.1221 C 04 0.3487 0.4184 0.2093 0.0235 m 05 0.0002 0.0002 0.9993 0.0002 G 06 0.0002 0.0002 0.0467 0.9528 T 07 0.0002 0.0002 0.0002 0.9993 T 08 0.8118 0.0003 0.1564 0.0315 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK28565.1:M1313_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK29550.1/M1314_1.02/CISBP XX ID PK29550.1:M1314_1.02:CISBP XX NA PK29550.1 XX DE PK29550.1 XX OS Cannabis sativa XX BF 11444; XX P0 A C G T 01 0.2722 0.2163 0.2366 0.2749 w 02 0.2430 0.2795 0.1361 0.3414 y 03 0.2990 0.0928 0.5394 0.0688 r 04 0.0668 0.0272 0.8643 0.0418 G 05 0.8368 0.0479 0.0715 0.0438 A 06 0.0492 0.0308 0.0257 0.8943 T 07 0.5732 0.1266 0.1205 0.1797 a 08 0.5421 0.0549 0.2364 0.1666 a 09 0.2095 0.2409 0.3523 0.1973 g 10 0.2525 0.1966 0.3619 0.1889 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK29550.1:M1314_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HRS1/M1315_1.02/CISBP XX ID HRS1:M1315_1.02:CISBP XX NA HRS1 XX DE HRS1 XX OS Arabidopsis thaliana XX BF 11445; XX P0 A C G T 01 0.1941 0.2836 0.2239 0.2985 y 02 0.2952 0.1239 0.4856 0.0953 r 03 0.0001 0.0001 0.9998 0.0001 G 04 0.7877 0.0001 0.0758 0.1364 A 05 0.9013 0.0001 0.0001 0.0985 A 06 0.0076 0.0001 0.0001 0.9922 T 07 0.0531 0.9468 0.0001 0.0001 C 08 0.0578 0.0770 0.0001 0.8651 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HRS1:M1315_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TRFL5/M1316_1.02/CISBP XX ID TRFL5:M1316_1.02:CISBP XX NA TRFL5 XX DE TRFL5 XX OS Arabidopsis thaliana XX BF 11446; XX P0 A C G T 01 0.1336 0.3996 0.1336 0.3331 y 02 0.0005 0.0005 0.0005 0.9986 T 03 0.9986 0.0005 0.0005 0.0005 A 04 0.0005 0.0005 0.9986 0.0005 G 05 0.0005 0.0005 0.9986 0.0005 G 06 0.0005 0.0005 0.9986 0.0005 G 07 0.0005 0.9986 0.0005 0.0005 C 08 0.6143 0.0008 0.1541 0.2308 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TRFL5:M1316_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EPR1/M1317_1.02/CISBP XX ID EPR1:M1317_1.02:CISBP XX NA EPR1 XX DE EPR1 XX OS Arabidopsis thaliana XX BF 11447; XX P0 A C G T 01 0.5243 0.1170 0.1910 0.1677 a 02 0.0524 0.0086 0.9152 0.0238 G 03 0.9826 0.0041 0.0071 0.0062 A 04 0.0079 0.0091 0.0000 0.9829 T 05 0.7197 0.0759 0.0159 0.1885 A 06 0.0747 0.1801 0.0777 0.6675 t 07 0.1450 0.0845 0.0943 0.6762 t 08 0.2418 0.1452 0.0855 0.5275 t 09 0.2944 0.1934 0.1632 0.3490 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EPR1:M1317_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G19000/M1318_1.02/CISBP XX ID AT1G19000:M1318_1.02:CISBP XX NA AT1G19000 XX DE AT1G19000 XX OS Arabidopsis thaliana XX BF 11448; XX P0 A C G T 01 0.3453 0.1404 0.1404 0.3740 w 02 0.3002 0.1647 0.2409 0.2942 w 03 0.1602 0.3162 0.0924 0.4311 y 04 0.2537 0.0879 0.6116 0.0468 r 05 0.0207 0.0116 0.9534 0.0143 G 06 0.9159 0.0300 0.0392 0.0149 A 07 0.0201 0.0115 0.0048 0.9636 T 08 0.6463 0.1047 0.1090 0.1400 a 09 0.5905 0.0385 0.2239 0.1471 a 10 0.2580 0.2243 0.3482 0.1695 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G19000:M1318_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB3/M1319_1.02/CISBP XX ID MYB3:M1319_1.02:CISBP XX NA MYB3 XX DE MYB3 XX OS Arabidopsis thaliana XX BF 11449; XX P0 A C G T 01 0.2845 0.1761 0.2791 0.2602 d 02 0.0591 0.0591 0.8226 0.0591 G 03 0.0204 0.0204 0.7709 0.1882 G 04 0.0001 0.0001 0.0001 0.9997 T 05 0.9286 0.0001 0.0001 0.0712 A 06 0.0001 0.0001 0.9997 0.0001 G 07 0.0001 0.0001 0.9997 0.0001 G 08 0.0001 0.0001 0.0001 0.9997 T 09 0.6500 0.0740 0.2020 0.0740 a 10 0.2726 0.1909 0.3455 0.1909 r 11 0.3110 0.2297 0.2297 0.2297 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB3:M1319_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G25550/M1320_1.02/CISBP XX ID AT1G25550:M1320_1.02:CISBP XX NA AT1G25550 XX DE AT1G25550 XX OS Arabidopsis thaliana XX BF 11450; XX P0 A C G T 01 0.3007 0.2036 0.2342 0.2614 w 02 0.6445 0.0672 0.1341 0.1542 a 03 0.0311 0.0226 0.7484 0.1979 G 04 0.9475 0.0105 0.0371 0.0049 A 05 0.0334 0.0032 0.0006 0.9628 T 06 0.1842 0.1449 0.0595 0.6115 t 07 0.0000 0.9795 0.0007 0.0198 C 08 0.1192 0.3996 0.2024 0.2788 y 09 0.2402 0.2847 0.2577 0.2174 s 10 0.2143 0.2725 0.1998 0.3134 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G25550:M1320_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G68670/M1321_1.02/CISBP XX ID AT1G68670:M1321_1.02:CISBP XX NA AT1G68670 XX DE AT1G68670 XX OS Arabidopsis thaliana XX BF 11451; XX P0 A C G T 01 0.2922 0.2122 0.2725 0.2231 r 02 0.2370 0.2418 0.2567 0.2645 k 03 0.3157 0.2116 0.3095 0.1632 r 04 0.0674 0.0824 0.7583 0.0919 G 05 0.4936 0.1193 0.1517 0.2355 a 06 0.9514 0.0024 0.0255 0.0207 A 07 0.0826 0.0571 0.0024 0.8579 T 08 0.2300 0.5946 0.0838 0.0916 c 09 0.2160 0.1699 0.1284 0.4856 t 10 0.2632 0.2220 0.2091 0.3057 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G68670:M1321_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G74840/M1322_1.02/CISBP XX ID AT1G74840:M1322_1.02:CISBP XX NA AT1G74840 XX DE AT1G74840 XX OS Arabidopsis thaliana XX BF 11452; XX P0 A C G T 01 0.2284 0.2284 0.2284 0.3149 t 02 0.1839 0.4483 0.1839 0.1839 c 03 0.0894 0.6320 0.0894 0.1892 c 04 0.0990 0.0002 0.9007 0.0002 G 05 0.0002 0.0002 0.9995 0.0002 G 06 0.9995 0.0002 0.0002 0.0002 A 07 0.0002 0.0002 0.0002 0.9995 T 08 0.9146 0.0850 0.0002 0.0002 A 09 0.3727 0.0218 0.0218 0.5837 w 10 0.0663 0.8012 0.0663 0.0663 C 11 0.2468 0.3329 0.1608 0.2596 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G74840:M1322_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G01060/M1323_1.02/CISBP XX ID AT2G01060:M1323_1.02:CISBP XX NA AT2G01060 XX DE AT2G01060 XX OS Arabidopsis thaliana XX BF 11453; XX P0 A C G T 01 0.3645 0.1512 0.1828 0.3014 w 02 0.6360 0.0607 0.0741 0.2293 a 03 0.0269 0.0063 0.7662 0.2006 G 04 0.9771 0.0011 0.0170 0.0048 A 05 0.0045 0.0001 0.0001 0.9954 T 06 0.1661 0.0978 0.2009 0.5352 t 07 0.0059 0.9859 0.0001 0.0081 C 08 0.0165 0.4516 0.2381 0.2938 y 09 0.2423 0.2960 0.2044 0.2573 y 10 0.2318 0.2613 0.1324 0.3745 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G01060:M1323_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR14/M1324_1.02/CISBP XX ID ARR14:M1324_1.02:CISBP XX NA ARR14 XX DE ARR14 XX OS Arabidopsis thaliana XX BF 8866; XX P0 A C G T 01 0.3759 0.1793 0.2213 0.2235 a 02 0.1460 0.3122 0.3282 0.2135 s 03 0.2911 0.4657 0.1403 0.1029 m 04 0.3251 0.0843 0.5415 0.0491 r 05 0.4291 0.0203 0.2027 0.3478 w 06 0.9440 0.0005 0.0004 0.0552 A 07 0.0134 0.0003 0.0003 0.9860 T 08 0.0658 0.8942 0.0010 0.0391 C 09 0.1413 0.1330 0.0799 0.6458 t 10 0.2563 0.1957 0.1618 0.3862 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR14:M1324_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G04030/M1325_1.02/CISBP XX ID AT3G04030:M1325_1.02:CISBP XX NA AT3G04030 XX DE AT3G04030 XX OS Arabidopsis thaliana XX BF 11454; XX P0 A C G T 01 0.3815 0.1876 0.1802 0.2507 w 02 0.1019 0.0718 0.5521 0.2742 k 03 0.7922 0.0219 0.1537 0.0323 A 04 0.0002 0.0000 0.0000 0.9998 T 05 0.1735 0.1222 0.2183 0.4859 t 06 0.0343 0.8844 0.0336 0.0477 C 07 0.0792 0.3622 0.2821 0.2765 b 08 0.2131 0.3085 0.2476 0.2308 c 09 0.2252 0.2696 0.2274 0.2778 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G04030:M1325_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G13040/M1326_1.02/CISBP XX ID AT3G13040:M1326_1.02:CISBP XX NA AT3G13040 XX DE AT3G13040 XX OS Arabidopsis thaliana XX BF 11455; XX P0 A C G T 01 0.2638 0.2160 0.2718 0.2484 r 02 0.3424 0.1805 0.1995 0.2775 w 03 0.5284 0.1078 0.1264 0.2374 a 04 0.0716 0.0315 0.5790 0.3178 k 05 0.8973 0.0002 0.0891 0.0135 A 06 0.0055 0.0001 0.0002 0.9942 T 07 0.1799 0.1910 0.2287 0.4004 t 08 0.0150 0.9235 0.0260 0.0355 C 09 0.0728 0.3792 0.2467 0.3013 y 10 0.2403 0.2906 0.2427 0.2263 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G13040:M1326_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR1/M1327_1.02/CISBP XX ID ARR1:M1327_1.02:CISBP XX NA ARR1 XX DE ARR1 XX OS Arabidopsis thaliana XX BF 7490; XX P0 A C G T 01 0.4058 0.1683 0.2076 0.2183 a 02 0.1721 0.2925 0.3432 0.1922 s 03 0.2968 0.4655 0.1388 0.0988 m 04 0.3065 0.0827 0.5641 0.0468 r 05 0.4235 0.0217 0.2347 0.3201 w 06 0.9654 0.0001 0.0003 0.0342 A 07 0.0212 0.0008 0.0008 0.9772 T 08 0.0557 0.8972 0.0042 0.0429 C 09 0.1430 0.1564 0.0912 0.6095 t 10 0.2569 0.1903 0.1810 0.3719 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR1:M1327_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G24120/M1328_1.02/CISBP XX ID AT3G24120:M1328_1.02:CISBP XX NA AT3G24120 XX DE AT3G24120 XX OS Arabidopsis thaliana XX BF 11456; XX P0 A C G T 01 0.2788 0.2107 0.2024 0.3081 w 02 0.3738 0.1802 0.1663 0.2797 w 03 0.1007 0.0967 0.4650 0.3376 k 04 0.7807 0.0133 0.1608 0.0452 A 05 0.0002 0.0015 0.0001 0.9982 T 06 0.1778 0.1168 0.2025 0.5030 t 07 0.0734 0.7856 0.0645 0.0764 C 08 0.0920 0.3443 0.2819 0.2819 b 09 0.2193 0.2761 0.2548 0.2498 s 10 0.2425 0.2707 0.2216 0.2653 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G24120:M1328_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB94/M1329_1.02/CISBP XX ID MYB94:M1329_1.02:CISBP XX NA MYB94 XX DE MYB94 XX OS Arabidopsis thaliana XX BF 11457; XX P0 A C G T 01 0.3322 0.0033 0.3322 0.3322 d 02 0.9940 0.0020 0.0020 0.0020 A 03 0.0020 0.9940 0.0020 0.0020 C 04 0.0020 0.9940 0.0020 0.0020 C 05 0.0020 0.0020 0.9940 0.0020 G 06 0.0020 0.0020 0.9940 0.0020 G 07 0.0020 0.0020 0.0020 0.9940 T 08 0.3988 0.2004 0.0020 0.3988 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB94:M1329_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtMYB77/M1330_1.02/CISBP XX ID AtMYB77:M1330_1.02:CISBP XX NA AtMYB77 XX DE AtMYB77 XX OS Arabidopsis thaliana XX BF 10005; XX P0 A C G T 01 0.2273 0.0005 0.7264 0.0458 G 02 0.4779 0.0438 0.4779 0.0004 r 03 0.0004 0.9572 0.0004 0.0420 C 04 0.3332 0.1668 0.4996 0.0004 r 05 0.0004 0.0004 0.9988 0.0004 G 06 0.0004 0.0004 0.0420 0.9572 T 07 0.0004 0.0004 0.0004 0.9988 T 08 0.5617 0.0006 0.4370 0.0006 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtMYB77:M1330_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR2/M1331_1.02/CISBP XX ID ARR2:M1331_1.02:CISBP XX NA ARR2 XX DE ARR2 XX OS Arabidopsis thaliana XX BF 7491; XX P0 A C G T 01 0.1743 0.2571 0.3943 0.1743 s 02 0.3375 0.5717 0.0454 0.0454 m 03 0.2141 0.0002 0.7856 0.0002 G 04 0.4764 0.0002 0.2141 0.3093 w 05 0.9995 0.0002 0.0002 0.0002 A 06 0.0002 0.0002 0.0002 0.9995 T 07 0.0002 0.9995 0.0002 0.0002 C 08 0.0002 0.0002 0.0002 0.9995 T 09 0.1616 0.0759 0.0759 0.6866 T 10 0.2047 0.2047 0.2047 0.3858 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR2:M1331_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC APRR2/M1332_1.02/CISBP XX ID APRR2:M1332_1.02:CISBP XX NA APRR2 XX DE APRR2 XX OS Arabidopsis thaliana XX BF 11458; XX P0 A C G T 01 0.2956 0.1847 0.2985 0.2212 r 02 0.1553 0.3781 0.2484 0.2182 c 03 0.2702 0.1178 0.5281 0.0839 r 04 0.3009 0.2207 0.1977 0.2806 w 05 0.6282 0.0457 0.1231 0.2029 a 06 0.8733 0.0173 0.0056 0.1038 A 07 0.1075 0.0399 0.0007 0.8518 T 08 0.1377 0.7097 0.0748 0.0779 C 09 0.1528 0.2785 0.1276 0.4411 y 10 0.3369 0.2170 0.2398 0.2064 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=APRR2:M1332_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB98/M1333_1.02/CISBP XX ID MYB98:M1333_1.02:CISBP XX NA MYB98 XX DE MYB98 XX OS Arabidopsis thaliana XX BF 11459; XX P0 A C G T 01 0.2945 0.2030 0.2030 0.2996 w 02 0.1201 0.1201 0.2369 0.5229 t 03 0.4324 0.5197 0.0240 0.0240 m 04 0.0002 0.9084 0.0912 0.0002 C 05 0.0002 0.0002 0.9995 0.0002 G 06 0.0002 0.0002 0.0002 0.9995 T 07 0.0002 0.0002 0.0002 0.9995 T 08 0.9995 0.0002 0.0002 0.0002 A 09 0.0472 0.8584 0.0472 0.0472 C 10 0.3228 0.2259 0.3213 0.1301 r 11 0.2262 0.2262 0.3214 0.2262 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB98:M1333_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtPHR1/M1334_1.02/CISBP XX ID AtPHR1:M1334_1.02:CISBP XX NA AtPHR1 XX DE AtPHR1 XX OS Arabidopsis thaliana XX BF 11460; XX P0 A C G T 01 0.3264 0.1791 0.2300 0.2645 w 02 0.5302 0.1008 0.1307 0.2382 a 03 0.0834 0.0329 0.5248 0.3589 k 04 0.8309 0.0132 0.1488 0.0070 A 05 0.0314 0.0005 0.0001 0.9680 T 06 0.1845 0.1959 0.2592 0.3605 k 07 0.0003 0.9906 0.0000 0.0091 C 08 0.0537 0.3811 0.2939 0.2713 b 09 0.2261 0.2817 0.2474 0.2449 c 10 0.2248 0.2692 0.2055 0.3005 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtPHR1:M1334_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATMYB4/M1335_1.02/CISBP XX ID ATMYB4:M1335_1.02:CISBP XX NA ATMYB4 XX DE ATMYB4 XX OS Arabidopsis thaliana XX BF 11461; XX P0 A C G T 01 0.2530 0.0362 0.6745 0.0362 r 02 0.0091 0.0001 0.7656 0.2252 G 03 0.0001 0.0088 0.0001 0.9910 T 04 0.5651 0.0088 0.0349 0.3913 w 05 0.0262 0.0001 0.9737 0.0001 G 06 0.0179 0.0179 0.7766 0.1875 G 07 0.0100 0.0001 0.0001 0.9898 T 08 0.3188 0.0726 0.5361 0.0726 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATMYB4:M1335_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G04760/M1336_1.02/CISBP XX ID AT5G04760:M1336_1.02:CISBP XX NA AT5G04760 XX DE AT5G04760 XX OS Arabidopsis thaliana XX BF 11462; XX P0 A C G T 01 0.1549 0.3452 0.1549 0.3450 y 02 0.3624 0.0758 0.2977 0.2641 d 03 0.0002 0.0002 0.9995 0.0002 G 04 0.9995 0.0002 0.0002 0.0002 A 05 0.0002 0.0002 0.0002 0.9995 T 06 0.9055 0.0941 0.0002 0.0002 A 07 0.9995 0.0002 0.0002 0.0002 A 08 0.0956 0.0945 0.7117 0.0982 G 09 0.0953 0.0953 0.7142 0.0953 G 10 0.1744 0.2807 0.1744 0.3706 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G04760:M1336_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G05090/M1337_1.02/CISBP XX ID AT5G05090:M1337_1.02:CISBP XX NA AT5G05090 XX DE AT5G05090 XX OS Arabidopsis thaliana XX BF 11463; XX P0 A C G T 01 0.3251 0.2250 0.2250 0.2250 a 02 0.2488 0.2602 0.0484 0.4426 y 03 0.8255 0.0245 0.0245 0.1254 A 04 0.0002 0.0002 0.9993 0.0002 G 05 0.9993 0.0002 0.0002 0.0002 A 06 0.0002 0.0002 0.0002 0.9993 T 07 0.2878 0.3176 0.0002 0.3943 h 08 0.0002 0.7769 0.0002 0.2227 C 09 0.0252 0.0252 0.7230 0.2265 G 10 0.2990 0.2018 0.2974 0.2018 r 11 0.3229 0.2257 0.2257 0.2257 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G05090:M1337_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB33/M1338_1.02/CISBP XX ID MYB33:M1338_1.02:CISBP XX NA MYB33 XX DE MYB33 XX OS Arabidopsis thaliana XX BF 11464; XX P0 A C G T 01 0.2511 0.2462 0.2413 0.2614 w 02 0.3075 0.1605 0.2395 0.2925 w 03 0.2522 0.0660 0.4371 0.2447 r 04 0.2963 0.0322 0.3408 0.3307 d 05 0.0635 0.6334 0.0297 0.2734 y 06 0.2671 0.3012 0.2865 0.1452 v 07 0.0057 0.0017 0.9818 0.0108 G 08 0.0050 0.0006 0.0948 0.8996 T 09 0.0355 0.0099 0.0012 0.9534 T 10 0.5446 0.0694 0.2236 0.1624 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB33:M1338_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G08520/M1339_1.02/CISBP XX ID AT5G08520:M1339_1.02:CISBP XX NA AT5G08520 XX DE AT5G08520 XX OS Arabidopsis thaliana XX BF 11465; XX P0 A C G T 01 0.2490 0.2515 0.2101 0.2893 y 02 0.2832 0.1493 0.4182 0.1493 r 03 0.0379 0.0330 0.8941 0.0350 G 04 0.7833 0.0778 0.1160 0.0230 A 05 0.0057 0.0140 0.0001 0.9803 T 06 0.5397 0.1318 0.1471 0.1815 a 07 0.4991 0.0785 0.2529 0.1695 r 08 0.2067 0.2426 0.3692 0.1815 g 09 0.2480 0.2051 0.3519 0.1951 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G08520:M1339_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC KAN/M1340_1.02/CISBP XX ID KAN:M1340_1.02:CISBP XX NA KAN XX DE KAN XX OS Arabidopsis thaliana XX BF 8881; XX P0 A C G T 01 0.4066 0.1620 0.2732 0.1582 r 02 0.2581 0.1129 0.4251 0.2039 r 03 0.4445 0.1497 0.1484 0.2574 w 04 0.5542 0.0757 0.1441 0.2261 a 05 0.1256 0.1348 0.0133 0.7264 T 06 0.7264 0.0133 0.1348 0.1256 A 07 0.2261 0.1441 0.0757 0.5542 t 08 0.2574 0.1484 0.1497 0.4445 w 09 0.2039 0.4251 0.1129 0.2581 y 10 0.1582 0.2732 0.1620 0.4066 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=KAN:M1340_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATMYR1/M1341_1.02/CISBP XX ID ATMYR1:M1341_1.02:CISBP XX NA ATMYR1 XX DE ATMYR1 XX OS Arabidopsis thaliana XX BF 11466; XX P0 A C G T 01 0.2468 0.2755 0.2985 0.1792 s 02 0.2273 0.2538 0.3069 0.2120 s 03 0.1984 0.2678 0.3543 0.1795 s 04 0.2324 0.3232 0.4068 0.0376 s 05 0.0290 0.0196 0.9511 0.0002 G 06 0.5007 0.2077 0.1378 0.1538 a 07 0.8768 0.0013 0.0391 0.0828 A 08 0.0195 0.1415 0.0490 0.7900 T 09 0.2783 0.5661 0.0759 0.0797 m 10 0.2261 0.2088 0.1692 0.3959 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATMYR1:M1341_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHL1/M1342_1.02/CISBP XX ID PHL1:M1342_1.02:CISBP XX NA PHL1 XX DE PHL1 XX OS Arabidopsis thaliana XX BF 11467; XX P0 A C G T 01 0.3788 0.1571 0.1998 0.2643 w 02 0.6052 0.0625 0.1052 0.2271 a 03 0.0607 0.0137 0.6367 0.2889 k 04 0.9136 0.0039 0.0742 0.0082 A 05 0.0253 0.0007 0.0007 0.9732 T 06 0.1791 0.1542 0.2517 0.4150 k 07 0.0017 0.9809 0.0006 0.0168 C 08 0.0320 0.4098 0.2666 0.2917 b 09 0.2388 0.2859 0.2139 0.2613 y 10 0.2359 0.2556 0.1566 0.3519 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHL1:M1342_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB24/M1343_1.02/CISBP XX ID MYB24:M1343_1.02:CISBP XX NA MYB24 XX DE MYB24 XX OS Arabidopsis thaliana XX BF 11468; XX P0 A C G T 01 0.2928 0.2126 0.2597 0.2350 r 02 0.3691 0.1577 0.2425 0.2307 a 03 0.2872 0.0203 0.5960 0.0966 r 04 0.0251 0.0005 0.2526 0.7219 K 05 0.0504 0.0603 0.0004 0.8889 T 06 0.5425 0.2056 0.0601 0.1917 a 07 0.0529 0.0258 0.8792 0.0421 G 08 0.0508 0.0054 0.8602 0.0837 G 09 0.0391 0.3602 0.0187 0.5821 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB24:M1343_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G47390/M1344_1.02/CISBP XX ID AT5G47390:M1344_1.02:CISBP XX NA AT5G47390 XX DE AT5G47390 XX OS Arabidopsis thaliana XX BF 11469; XX P0 A C G T 01 0.3676 0.1862 0.2320 0.2142 a 02 0.2246 0.3001 0.0537 0.4216 y 03 0.1919 0.0351 0.7257 0.0473 G 04 0.0073 0.0229 0.9363 0.0335 G 05 0.9240 0.0033 0.0203 0.0524 A 06 0.0149 0.0008 0.0007 0.9836 T 07 0.7772 0.0632 0.0625 0.0971 A 08 0.7443 0.0112 0.1661 0.0784 A 09 0.1424 0.2211 0.4970 0.1396 g 10 0.2167 0.1467 0.4776 0.1590 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G47390:M1344_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR18/M1345_1.02/CISBP XX ID ARR18:M1345_1.02:CISBP XX NA ARR18 XX DE ARR18 XX OS Arabidopsis thaliana XX BF 11470; XX P0 A C G T 01 0.3239 0.2254 0.2254 0.2254 a 02 0.2021 0.2021 0.2021 0.3936 t 03 0.2737 0.3698 0.1783 0.1783 m 04 0.3291 0.1862 0.1943 0.2904 w 05 0.8343 0.0255 0.0255 0.1148 A 06 0.0003 0.0876 0.9118 0.0003 G 07 0.9991 0.0003 0.0003 0.0003 A 08 0.0003 0.0003 0.0003 0.9991 T 09 0.7283 0.0249 0.0249 0.2219 A 10 0.0482 0.6727 0.0482 0.2309 c 11 0.1594 0.0720 0.6966 0.0720 G 12 0.3415 0.2433 0.2638 0.1514 r 13 0.2248 0.2248 0.2248 0.3255 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR18:M1345_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATTRB2/M1346_1.02/CISBP XX ID ATTRB2:M1346_1.02:CISBP XX NA ATTRB2 XX DE ATTRB2 XX OS Arabidopsis thaliana XX BF 11471; XX P0 A C G T 01 0.3678 0.1265 0.0690 0.4367 w 02 0.3492 0.0001 0.6110 0.0397 r 03 0.3718 0.6281 0.0001 0.0001 m 04 0.0001 0.9998 0.0001 0.0001 C 05 0.0001 0.9998 0.0001 0.0001 C 06 0.0001 0.0064 0.0001 0.9935 T 07 0.9799 0.0001 0.0067 0.0133 A 08 0.4536 0.0741 0.3981 0.0741 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATTRB2:M1346_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os01g51154/M1361_1.02/CISBP XX ID LOC_Os01g51154:M1361_1.02:CISBP XX NA LOC_Os01g51154 XX DE LOC_Os01g51154 XX OS Oryza sativa XX BF 11488; XX P0 A C G T 01 0.4156 0.1133 0.0597 0.4114 w 02 0.5347 0.0243 0.3693 0.0716 r 03 0.4164 0.5621 0.0068 0.0148 m 04 0.0255 0.9620 0.0011 0.0113 C 05 0.0414 0.9284 0.0267 0.0035 C 06 0.0101 0.0008 0.0002 0.9888 T 07 0.8318 0.0319 0.0826 0.0537 A 08 0.3734 0.1320 0.3887 0.1059 r 09 0.2656 0.2578 0.2264 0.2502 h 10 0.2410 0.2559 0.2203 0.2828 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os01g51154:M1361_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g09480/M1362_1.02/CISBP XX ID LOC_Os02g09480:M1362_1.02:CISBP XX NA LOC_Os02g09480 XX DE LOC_Os02g09480 XX OS Oryza sativa XX BF 11489; XX P0 A C G T 01 0.2900 0.2090 0.2090 0.2920 w 02 0.2404 0.0514 0.5365 0.1717 g 03 0.8956 0.0002 0.1041 0.0002 A 04 0.0002 0.8956 0.0002 0.1041 C 05 0.2998 0.6999 0.0002 0.0002 M 06 0.0002 0.0002 0.9995 0.0002 G 07 0.0002 0.0002 0.6160 0.3837 k 08 0.0002 0.0002 0.0002 0.9995 T 09 0.7685 0.0412 0.0412 0.1492 A 10 0.2963 0.1988 0.1988 0.3062 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g09480:M1362_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g22020/M1363_1.02/CISBP XX ID LOC_Os02g22020:M1363_1.02:CISBP XX NA LOC_Os02g22020 XX DE LOC_Os02g22020 XX OS Oryza sativa XX BF 11490; XX P0 A C G T 01 0.2643 0.2321 0.2367 0.2669 w 02 0.4592 0.1316 0.1924 0.2169 a 03 0.0569 0.0575 0.6594 0.2262 g 04 0.8562 0.0175 0.0732 0.0531 A 05 0.0650 0.0295 0.0223 0.8833 T 06 0.2117 0.2075 0.1051 0.4758 t 07 0.0252 0.8948 0.0245 0.0555 C 08 0.1468 0.3835 0.2126 0.2571 y 09 0.2242 0.2936 0.2711 0.2111 s 10 0.2214 0.2929 0.2259 0.2598 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g22020:M1363_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os03g21240/M1364_1.02/CISBP XX ID LOC_Os03g21240:M1364_1.02:CISBP XX NA LOC_Os03g21240 XX DE LOC_Os03g21240 XX OS Oryza sativa XX BF 11491; XX P0 A C G T 01 0.3697 0.1628 0.2070 0.2605 w 02 0.5650 0.0854 0.1129 0.2367 a 03 0.0855 0.0282 0.5328 0.3536 k 04 0.8654 0.0038 0.1092 0.0216 A 05 0.0366 0.0007 0.0002 0.9626 T 06 0.1909 0.1693 0.2476 0.3922 t 07 0.0009 0.9775 0.0022 0.0194 C 08 0.0485 0.3885 0.2604 0.3026 b 09 0.2449 0.2600 0.2376 0.2574 y 10 0.2307 0.2627 0.1889 0.3177 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os03g21240:M1364_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os08g06110/M1365_1.02/CISBP XX ID LOC_Os08g06110:M1365_1.02:CISBP XX NA LOC_Os08g06110 XX DE LOC_Os08g06110 XX OS Oryza sativa XX BF 11492; XX P0 A C G T 01 0.2836 0.2231 0.2417 0.2516 w 02 0.5645 0.1140 0.1917 0.1298 a 03 0.0262 0.0001 0.9593 0.0144 G 04 0.9910 0.0022 0.0060 0.0009 A 05 0.0074 0.0043 0.0018 0.9865 T 06 0.7157 0.0785 0.0127 0.1931 A 07 0.0713 0.2252 0.0854 0.6182 t 08 0.1351 0.1337 0.1554 0.5758 t 09 0.2212 0.2042 0.1202 0.4544 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os08g06110:M1365_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.362.4.1/M1384_1.02/CISBP XX ID e_gw1.362.4.1:M1384_1.02:CISBP XX NA e_gw1.362.4.1 XX DE e_gw1.362.4.1 XX OS Physcomitrella patens XX BF 11503; XX P0 A C G T 01 0.3407 0.1927 0.2450 0.2216 a 02 0.1838 0.2912 0.3218 0.2032 s 03 0.2819 0.3843 0.2006 0.1332 m 04 0.3430 0.1249 0.4724 0.0596 r 05 0.4211 0.0431 0.2479 0.2880 w 06 0.9927 0.0000 0.0024 0.0049 A 07 0.0069 0.0036 0.0019 0.9876 T 08 0.0706 0.8866 0.0024 0.0403 C 09 0.1807 0.1844 0.1436 0.4913 t 10 0.2566 0.2322 0.1978 0.3134 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.362.4.1:M1384_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.scaffold_70000111/M1388_1.02/CISBP XX ID fgenesh1_pg.scaffold_70000111:M1388_1.02:CISBP XX NA fgenesh1_pg.scaffold_70000111 XX DE fgenesh1_pg.scaffold_70000111 XX OS Physcomitrella patens XX BF 11507; XX P0 A C G T 01 0.1984 0.3080 0.2065 0.2872 y 02 0.2240 0.1386 0.5454 0.0920 g 03 0.0071 0.0269 0.9377 0.0283 G 04 0.7623 0.0651 0.1718 0.0008 A 05 0.0006 0.0431 0.0280 0.9282 T 06 0.4272 0.1510 0.2298 0.1920 a 07 0.4316 0.0935 0.3011 0.1737 r 08 0.1905 0.2521 0.3687 0.1887 s 09 0.2109 0.1986 0.4247 0.1659 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.scaffold_70000111:M1388_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0100010593/M1389_1.02/CISBP XX ID 0100010593:M1389_1.02:CISBP XX NA 0100010593 XX DE 0100010593 XX OS Ostreococcus tauri XX BF 11508; XX P0 A C G T 01 0.3887 0.1017 0.1956 0.3140 w 02 0.4134 0.0637 0.0458 0.4771 w 03 0.7767 0.0000 0.1502 0.0731 A 04 0.2653 0.7002 0.0073 0.0272 M 05 0.0464 0.8692 0.0346 0.0498 C 06 0.0829 0.8445 0.0445 0.0281 C 07 0.0205 0.0481 0.0152 0.9162 T 08 0.5894 0.1095 0.1568 0.1443 a 09 0.3385 0.1785 0.2684 0.2145 r 10 0.2840 0.2357 0.1946 0.2856 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0100010593:M1389_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0600010132/M1390_1.02/CISBP XX ID 0600010132:M1390_1.02:CISBP XX NA 0600010132 XX DE 0600010132 XX OS Ostreococcus tauri XX BF 11509; XX P0 A C G T 01 0.3265 0.2245 0.2245 0.2245 a 02 0.1968 0.1968 0.1968 0.4097 t 03 0.1724 0.3852 0.2701 0.1724 s 04 0.1927 0.5040 0.0987 0.2046 c 05 0.1158 0.0231 0.8379 0.0231 G 06 0.0002 0.0002 0.9994 0.0002 G 07 0.9994 0.0002 0.0002 0.0002 A 08 0.0002 0.0002 0.0002 0.9994 T 09 0.8120 0.1366 0.0257 0.0257 A 10 0.6553 0.0534 0.1452 0.1461 a 11 0.0778 0.3908 0.1696 0.3617 y 12 0.1515 0.2467 0.2659 0.3359 k 13 0.2271 0.2271 0.2271 0.3188 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0600010132:M1390_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 1200010153/M1391_1.02/CISBP XX ID 1200010153:M1391_1.02:CISBP XX NA 1200010153 XX DE 1200010153 XX OS Ostreococcus tauri XX BF 11510; XX P0 A C G T 01 0.6265 0.0535 0.0752 0.2447 a 02 0.2934 0.6028 0.0277 0.0761 m 03 0.1320 0.8652 0.0001 0.0027 C 04 0.0100 0.9822 0.0065 0.0013 C 05 0.0169 0.9793 0.0019 0.0019 C 06 0.0011 0.0516 0.0000 0.9473 T 07 0.9035 0.0053 0.0601 0.0311 A 08 0.2864 0.1686 0.4188 0.1262 r 09 0.2386 0.2459 0.1768 0.3387 t 10 0.2305 0.2599 0.1760 0.3337 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=1200010153:M1391_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 1200010282/M1392_1.02/CISBP XX ID 1200010282:M1392_1.02:CISBP XX NA 1200010282 XX DE 1200010282 XX OS Ostreococcus tauri XX BF 11511; XX P0 A C G T 01 0.2292 0.3125 0.2292 0.2292 c 02 0.2080 0.2080 0.2913 0.2927 k 03 0.2404 0.2618 0.2588 0.2390 s 04 0.0994 0.0994 0.6170 0.1841 g 05 0.0002 0.0002 0.9147 0.0849 G 06 0.7389 0.1718 0.0891 0.0002 A 07 0.9994 0.0002 0.0002 0.0002 A 08 0.0002 0.0002 0.0002 0.9994 T 09 0.9369 0.0210 0.0210 0.0210 A 10 0.0422 0.0422 0.0422 0.8734 T 11 0.0945 0.1949 0.1824 0.5281 t 12 0.1508 0.5477 0.1508 0.1508 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=1200010282:M1392_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_Chr_03.00010061/M1394_1.02/CISBP XX ID estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP XX NA estExt_fgenesh1_pg.C_Chr_03.00010061 XX DE estExt_fgenesh1_pg.C_Chr_03.00010061 XX OS Ostreococcus tauri XX BF 11513; XX P0 A C G T 01 0.2962 0.2216 0.1709 0.3114 w 02 0.4435 0.0748 0.1150 0.3667 w 03 0.5581 0.0267 0.2584 0.1567 r 04 0.4662 0.5101 0.0003 0.0234 m 05 0.0313 0.9672 0.0004 0.0010 C 06 0.0778 0.8839 0.0379 0.0004 C 07 0.0062 0.2877 0.0264 0.6798 Y 08 0.5090 0.1763 0.1401 0.1746 a 09 0.2735 0.2109 0.3341 0.1815 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_Chr_03.00010215/M1395_1.02/CISBP XX ID estExt_fgenesh1_pg.C_Chr_03.00010215:M1395_1.02:CISBP XX NA estExt_fgenesh1_pg.C_Chr_03.00010215 XX DE estExt_fgenesh1_pg.C_Chr_03.00010215 XX OS Ostreococcus tauri XX BF 11514; XX P0 A C G T 01 0.2704 0.2471 0.1983 0.2842 w 02 0.3179 0.1254 0.4421 0.1146 r 03 0.0478 0.0324 0.8865 0.0334 G 04 0.8270 0.0464 0.0935 0.0330 A 05 0.0339 0.0175 0.0190 0.9295 T 06 0.5897 0.1179 0.1252 0.1673 a 07 0.5601 0.0562 0.2370 0.1467 a 08 0.1751 0.2460 0.4056 0.1733 g 09 0.2578 0.1929 0.3695 0.1798 r 10 0.2308 0.2629 0.1947 0.3116 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_Chr_03.00010215:M1395_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_Chr_13.00010057/M1396_1.02/CISBP XX ID estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP XX NA estExt_fgenesh1_pg.C_Chr_13.00010057 XX DE estExt_fgenesh1_pg.C_Chr_13.00010057 XX OS Ostreococcus tauri XX BF 11515; XX P0 A C G T 01 0.3460 0.1977 0.1494 0.3069 w 02 0.4812 0.0196 0.3940 0.1052 r 03 0.4513 0.5243 0.0091 0.0152 m 04 0.0062 0.9830 0.0026 0.0082 C 05 0.0080 0.9832 0.0084 0.0004 C 06 0.0027 0.0604 0.0012 0.9357 T 07 0.7340 0.0693 0.0640 0.1328 A 08 0.3634 0.1700 0.3097 0.1569 r 09 0.2571 0.2545 0.2126 0.2757 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC estExt_fgenesh1_pg.C_Chr_16.00010090/M1397_1.02/CISBP XX ID estExt_fgenesh1_pg.C_Chr_16.00010090:M1397_1.02:CISBP XX NA estExt_fgenesh1_pg.C_Chr_16.00010090 XX DE estExt_fgenesh1_pg.C_Chr_16.00010090 XX OS Ostreococcus tauri XX BF 11516; XX P0 A C G T 01 0.1994 0.2945 0.2858 0.2204 s 02 0.2653 0.3273 0.2330 0.1743 m 03 0.2784 0.2002 0.3912 0.1302 r 04 0.3342 0.1037 0.2656 0.2964 d 05 0.9850 0.0018 0.0051 0.0082 A 06 0.0938 0.0189 0.0146 0.8726 T 07 0.1301 0.6640 0.0993 0.1065 c 08 0.2432 0.2267 0.2051 0.3250 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=estExt_fgenesh1_pg.C_Chr_16.00010090:M1397_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC anac025/M1400_1.02/CISBP XX ID anac025:M1400_1.02:CISBP XX NA anac025 XX DE anac025 XX OS Arabidopsis thaliana XX BF 11519; XX P0 A C G T 01 0.0005 0.4207 0.0005 0.5783 y 02 0.9645 0.0003 0.0348 0.0003 A 03 0.0003 0.9990 0.0003 0.0003 C 04 0.0003 0.0003 0.9990 0.0003 G 05 0.0003 0.2758 0.0692 0.6546 y 06 0.8268 0.1725 0.0003 0.0003 A 07 0.9301 0.0003 0.0003 0.0692 A 08 0.0504 0.5993 0.0504 0.2999 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=anac025:M1400_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAP/M1401_1.02/CISBP XX ID NAP:M1401_1.02:CISBP XX NA NAP XX DE NAP XX OS Arabidopsis thaliana XX BF 11520; XX P0 A C G T 01 0.2618 0.2644 0.1959 0.2780 h 02 0.3745 0.1234 0.4483 0.0538 r 03 0.0021 0.0024 0.9135 0.0820 G 04 0.0276 0.0001 0.0001 0.9721 T 05 0.0208 0.9784 0.0003 0.0005 C 06 0.6821 0.1448 0.0472 0.1259 A 07 0.5996 0.1011 0.1223 0.1770 a 08 0.2475 0.2681 0.2735 0.2109 s 09 0.2506 0.2531 0.2911 0.2052 v XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAP:M1401_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NST1/M1402_1.02/CISBP XX ID NST1:M1402_1.02:CISBP XX NA NST1 XX DE NST1 XX OS Arabidopsis thaliana XX BF 11521; XX P0 A C G T 01 0.4439 0.1854 0.1854 0.1854 a 02 0.0456 0.0456 0.0456 0.8633 T 03 0.4422 0.0001 0.0829 0.4748 w 04 0.7192 0.0001 0.2805 0.0001 R 05 0.0760 0.9238 0.0001 0.0001 C 06 0.0001 0.0001 0.9996 0.0001 G 07 0.0001 0.2452 0.0001 0.7546 T 08 0.9996 0.0001 0.0001 0.0001 A 09 0.8057 0.0648 0.0648 0.0648 A 10 0.3105 0.2046 0.2046 0.2804 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NST1:M1402_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL9/M1403_1.02/CISBP XX ID NTL9:M1403_1.02:CISBP XX NA NTL9 XX DE NTL9 XX OS Arabidopsis thaliana XX BF 11522; XX P0 A C G T 01 0.0096 0.0096 0.0096 0.9712 T 02 0.0049 0.0049 0.0049 0.9853 T 03 0.9853 0.0049 0.0049 0.0049 A 04 0.9853 0.0049 0.0049 0.0049 A 05 0.0049 0.0049 0.9853 0.0049 G 06 0.0049 0.0049 0.0049 0.9853 T 07 0.9853 0.0049 0.0049 0.0049 A 08 0.9853 0.0049 0.0049 0.0049 A 09 0.0096 0.0096 0.0096 0.9712 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL9:M1403_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC2/M1404_1.02/CISBP XX ID NAC2:M1404_1.02:CISBP XX NA NAC2 XX DE NAC2 XX OS Arabidopsis thaliana XX BF 11523; XX P0 A C G T 01 0.2274 0.2274 0.2274 0.3178 t 02 0.3178 0.2274 0.2274 0.2274 a 03 0.5587 0.0798 0.2817 0.0798 r 04 0.0216 0.9352 0.0216 0.0216 C 05 0.9092 0.0001 0.0001 0.0906 A 06 0.4296 0.4797 0.0001 0.0906 m 07 0.0001 0.0001 0.9996 0.0001 G 08 0.2243 0.4972 0.0920 0.1865 c 09 0.2469 0.6071 0.0227 0.1232 c 10 0.9318 0.0227 0.0227 0.0227 A 11 0.2742 0.2992 0.2562 0.1703 v 12 0.3144 0.2285 0.2285 0.2285 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC2:M1404_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC079/M1405_1.02/CISBP XX ID ANAC079:M1405_1.02:CISBP XX NA ANAC079 XX DE ANAC079 XX OS Arabidopsis thaliana XX BF 11524; XX P0 A C G T 01 0.6648 0.0011 0.2223 0.1117 a 02 0.0008 0.6910 0.0008 0.3075 Y 03 0.9979 0.0007 0.0007 0.0007 A 04 0.0007 0.9979 0.0007 0.0007 C 05 0.0007 0.0007 0.9979 0.0007 G 06 0.0007 0.8554 0.0007 0.1432 C 07 0.7842 0.0719 0.0007 0.1432 A 08 0.9979 0.0007 0.0007 0.0007 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC079:M1405_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC083/M1406_1.02/CISBP XX ID NAC083:M1406_1.02:CISBP XX NA NAC083 XX DE NAC083 XX OS Arabidopsis thaliana XX BF 11525; XX P0 A C G T 01 0.4270 0.1241 0.1241 0.3248 w 02 0.0251 0.3267 0.0251 0.6231 y 03 0.9996 0.0001 0.0001 0.0001 A 04 0.0001 0.9996 0.0001 0.0001 C 05 0.0001 0.0001 0.9996 0.0001 G 06 0.0001 0.5976 0.0001 0.4021 y 07 0.9996 0.0001 0.0001 0.0001 A 08 0.9996 0.0001 0.0001 0.0001 A 09 0.1260 0.5222 0.1260 0.2258 c 10 0.2251 0.3248 0.2251 0.2251 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC083:M1406_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATNAC6/M1407_1.02/CISBP XX ID ATNAC6:M1407_1.02:CISBP XX NA ATNAC6 XX DE ATNAC6 XX OS Arabidopsis thaliana XX BF 11526; XX P0 A C G T 01 0.4247 0.1134 0.2402 0.2217 a 02 0.0705 0.5365 0.1072 0.2858 y 03 0.9248 0.0146 0.0127 0.0479 A 04 0.1818 0.7371 0.0182 0.0630 C 05 0.0981 0.0304 0.7176 0.1538 G 06 0.1271 0.4662 0.1404 0.2663 y 07 0.4145 0.2367 0.0845 0.2643 w 08 0.7419 0.0274 0.0514 0.1793 A 09 0.2040 0.3329 0.1960 0.2672 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATNAC6:M1407_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC100/M1408_1.02/CISBP XX ID ANAC100:M1408_1.02:CISBP XX NA ANAC100 XX DE ANAC100 XX OS Arabidopsis thaliana XX BF 11527; XX P0 A C G T 01 0.3680 0.1481 0.2672 0.2166 r 02 0.0992 0.4316 0.1620 0.3072 y 03 0.8586 0.0353 0.0423 0.0638 A 04 0.2554 0.6605 0.0414 0.0426 m 05 0.1228 0.0515 0.6461 0.1796 g 06 0.1623 0.3952 0.1723 0.2702 y 07 0.3611 0.2494 0.1055 0.2840 w 08 0.6568 0.0361 0.0863 0.2208 a 09 0.2408 0.3030 0.1820 0.2742 y 10 0.2203 0.3387 0.1974 0.2435 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC100:M1408_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002871237.1/M1409_1.02/CISBP XX ID XM_002871237.1:M1409_1.02:CISBP XX NA XM_002871237.1 XX DE XM_002871237.1 XX OS Arabidopsis lyrata XX BF 11528; XX P0 A C G T 01 0.3866 0.1437 0.2618 0.2080 r 02 0.1016 0.4507 0.1515 0.2961 y 03 0.8911 0.0236 0.0342 0.0510 A 04 0.2554 0.6738 0.0192 0.0516 m 05 0.1232 0.0690 0.6349 0.1730 g 06 0.1575 0.3992 0.1758 0.2676 y 07 0.3651 0.2547 0.1015 0.2787 h 08 0.6815 0.0301 0.0726 0.2158 A 09 0.2361 0.3093 0.1802 0.2743 y 10 0.2249 0.3527 0.1975 0.2249 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002871237.1:M1409_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002866389.1/M1410_1.02/CISBP XX ID XM_002866389.1:M1410_1.02:CISBP XX NA XM_002866389.1 XX DE XM_002866389.1 XX OS Arabidopsis lyrata XX BF 11529; XX P0 A C G T 01 0.4203 0.1229 0.2789 0.1779 r 02 0.0557 0.5387 0.0918 0.3139 y 03 0.9619 0.0324 0.0047 0.0010 A 04 0.1495 0.8346 0.0071 0.0088 C 05 0.0660 0.0207 0.8035 0.1098 G 06 0.1202 0.5174 0.1132 0.2493 c 07 0.4335 0.2196 0.1017 0.2452 a 08 0.7669 0.0192 0.0393 0.1746 A 09 0.1992 0.3385 0.1933 0.2689 y 10 0.1991 0.4258 0.1838 0.1913 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002866389.1:M1410_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os06g04090/M1411_1.02/CISBP XX ID LOC_Os06g04090:M1411_1.02:CISBP XX NA LOC_Os06g04090 XX DE LOC_Os06g04090 XX OS Oryza sativa XX BF 11530; XX P0 A C G T 01 0.2250 0.2295 0.2537 0.2918 k 02 0.2512 0.2342 0.2077 0.3068 w 03 0.2480 0.2407 0.2289 0.2824 t 04 0.1835 0.2849 0.2007 0.3310 y 05 0.5870 0.1600 0.1139 0.1391 a 06 0.3166 0.4868 0.0813 0.1153 m 07 0.1714 0.0904 0.5412 0.1971 g 08 0.1779 0.3881 0.1815 0.2525 y 09 0.3492 0.2227 0.1478 0.2803 w 10 0.5449 0.0966 0.1413 0.2172 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os06g04090:M1411_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.159.34.1/M1412_1.02/CISBP XX ID e_gw1.159.34.1:M1412_1.02:CISBP XX NA e_gw1.159.34.1 XX DE e_gw1.159.34.1 XX OS Physcomitrella patens XX BF 11531; XX P0 A C G T 01 0.4186 0.1164 0.2464 0.2185 a 02 0.0781 0.5014 0.0944 0.3262 y 03 0.8548 0.0256 0.0389 0.0807 A 04 0.1558 0.7491 0.0169 0.0782 C 05 0.1140 0.0487 0.6690 0.1683 g 06 0.1267 0.4938 0.1267 0.2527 y 07 0.3617 0.2734 0.0775 0.2874 h 08 0.7194 0.0302 0.0621 0.1884 A 09 0.2117 0.3421 0.1632 0.2829 y 10 0.2165 0.3944 0.1790 0.2101 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.159.34.1:M1412_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.279.28.1/M1413_1.02/CISBP XX ID e_gw1.279.28.1:M1413_1.02:CISBP XX NA e_gw1.279.28.1 XX DE e_gw1.279.28.1 XX OS Physcomitrella patens XX BF 11532; XX P0 A C G T 01 0.5684 0.1131 0.2054 0.1131 a 02 0.1639 0.6173 0.0668 0.1520 c 03 0.8438 0.0226 0.1109 0.0226 A 04 0.2738 0.6359 0.0002 0.0901 m 05 0.1736 0.0002 0.6406 0.1856 g 06 0.1856 0.7289 0.0002 0.0854 C 07 0.8118 0.0002 0.0002 0.1879 A 08 0.9995 0.0002 0.0002 0.0002 A 09 0.2270 0.3293 0.1371 0.3066 y 10 0.1834 0.1834 0.1834 0.4498 t 11 0.3175 0.2275 0.2275 0.2275 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.279.28.1:M1413_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.288.15.1/M1414_1.02/CISBP XX ID e_gw1.288.15.1:M1414_1.02:CISBP XX NA e_gw1.288.15.1 XX DE e_gw1.288.15.1 XX OS Physcomitrella patens XX BF 11533; XX P0 A C G T 01 0.2126 0.2446 0.2350 0.3078 t 02 0.2599 0.2705 0.1707 0.2989 h 03 0.3762 0.1440 0.2399 0.2399 a 04 0.1176 0.4188 0.1274 0.3361 y 05 0.8162 0.0677 0.0368 0.0794 A 06 0.2133 0.6873 0.0325 0.0669 C 07 0.1225 0.0573 0.6376 0.1827 g 08 0.1554 0.4140 0.1666 0.2640 y 09 0.3770 0.2477 0.0987 0.2765 w 10 0.6674 0.0444 0.0931 0.1951 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.288.15.1:M1414_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC e_gw1.327.11.1/M1415_1.02/CISBP XX ID e_gw1.327.11.1:M1415_1.02:CISBP XX NA e_gw1.327.11.1 XX DE e_gw1.327.11.1 XX OS Physcomitrella patens XX BF 11534; XX P0 A C G T 01 0.3246 0.2251 0.2251 0.2251 a 02 0.5542 0.0455 0.0455 0.3548 w 03 0.2882 0.1412 0.0002 0.5704 w 04 0.9993 0.0002 0.0002 0.0002 A 05 0.1037 0.6211 0.0002 0.2750 y 06 0.2755 0.0002 0.6366 0.0876 r 07 0.1888 0.5320 0.0002 0.2790 y 08 0.8234 0.0002 0.0002 0.1761 A 09 0.9248 0.0251 0.0251 0.0251 A 10 0.2047 0.2047 0.2047 0.3858 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=e_gw1.327.11.1:M1415_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MDP0000762302/M1416_1.02/CISBP XX ID MDP0000762302:M1416_1.02:CISBP XX NA MDP0000762302 XX DE MDP0000762302 XX OS Malus x domestica XX BF 11535; XX P0 A C G T 01 0.2138 0.2459 0.1507 0.3896 t 02 0.2072 0.1765 0.2608 0.3555 k 03 0.1347 0.2741 0.1347 0.4564 y 04 0.7403 0.1043 0.0469 0.1085 A 05 0.2902 0.6022 0.0586 0.0489 m 06 0.1144 0.0580 0.6518 0.1759 g 07 0.1568 0.4953 0.0787 0.2691 y 08 0.3919 0.1889 0.1318 0.2874 w 09 0.6590 0.0229 0.0966 0.2216 a 10 0.1730 0.3773 0.1645 0.2852 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MDP0000762302:M1416_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK06791.1/M1559_1.02/CISBP XX ID PK06791.1:M1559_1.02:CISBP XX NA PK06791.1 XX DE PK06791.1 XX OS Cannabis sativa XX BF 11678; XX P0 A C G T 01 0.2482 0.2457 0.2291 0.2770 t 02 0.2230 0.2440 0.2038 0.3293 t 03 0.1103 0.0272 0.8235 0.0390 G 04 0.0080 0.0387 0.0131 0.9402 T 05 0.9699 0.0194 0.0014 0.0093 A 06 0.0042 0.9839 0.0033 0.0086 C 07 0.0749 0.0477 0.7930 0.0844 G 08 0.1992 0.0360 0.6229 0.1418 g 09 0.3297 0.2782 0.1275 0.2646 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK06791.1:M1559_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK22320.1/M1560_1.02/CISBP XX ID PK22320.1:M1560_1.02:CISBP XX NA PK22320.1 XX DE PK22320.1 XX OS Cannabis sativa XX BF 11679; XX P0 A C G T 01 0.2416 0.1998 0.2751 0.2835 k 02 0.2369 0.2277 0.2187 0.3167 t 03 0.1149 0.0346 0.8074 0.0431 G 04 0.0086 0.0294 0.0061 0.9559 T 05 0.9626 0.0224 0.0003 0.0147 A 06 0.0063 0.9733 0.0005 0.0199 C 07 0.0378 0.0251 0.8918 0.0453 G 08 0.1539 0.0233 0.7400 0.0828 G 09 0.3115 0.2763 0.1414 0.2708 h 10 0.2615 0.3162 0.1735 0.2487 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK22320.1:M1560_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL14/M1561_1.02/CISBP XX ID SPL14:M1561_1.02:CISBP XX NA SPL14 XX DE SPL14 XX OS Arabidopsis thaliana XX BF 3015; XX P0 A C G T 01 0.2445 0.2421 0.2987 0.2147 g 02 0.2463 0.1825 0.3070 0.2642 k 03 0.2503 0.1969 0.3026 0.2503 d 04 0.1837 0.1092 0.6159 0.0912 g 05 0.0334 0.1201 0.1054 0.7411 T 06 0.8222 0.1048 0.0695 0.0034 A 07 0.0088 0.9705 0.0023 0.0183 C 08 0.1735 0.1392 0.5480 0.1392 g 09 0.2059 0.1422 0.4817 0.1702 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL14:M1561_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL11/M1562_1.02/CISBP XX ID SPL11:M1562_1.02:CISBP XX NA SPL11 XX DE SPL11 XX OS Arabidopsis thaliana XX BF 11680; XX P0 A C G T 01 0.2288 0.2288 0.2288 0.3135 t 02 0.3135 0.2288 0.2288 0.2288 a 03 0.1717 0.3178 0.1717 0.3387 y 04 0.1472 0.6242 0.0626 0.1660 c 05 0.0002 0.0002 0.9995 0.0002 G 06 0.0002 0.0002 0.0002 0.9995 T 07 0.9995 0.0002 0.0002 0.0002 A 08 0.0002 0.9995 0.0002 0.0002 C 09 0.0213 0.0213 0.9360 0.0213 G 10 0.0213 0.0213 0.7727 0.1847 G 11 0.5719 0.0784 0.0784 0.2713 w 12 0.1876 0.2713 0.1876 0.3535 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL11:M1562_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL4/M1563_1.02/CISBP XX ID SPL4:M1563_1.02:CISBP XX NA SPL4 XX DE SPL4 XX OS Arabidopsis thaliana XX BF 7520; XX P0 A C G T 01 0.2327 0.3269 0.1983 0.2422 c 02 0.2075 0.0543 0.6361 0.1020 g 03 0.0443 0.0832 0.0258 0.8467 T 04 0.9342 0.0514 0.0111 0.0033 A 05 0.0445 0.8935 0.0049 0.0571 C 06 0.1969 0.1059 0.5570 0.1401 g 07 0.2639 0.1041 0.4138 0.2182 r 08 0.2525 0.2525 0.2046 0.2904 h 09 0.2690 0.2585 0.1953 0.2772 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL4:M1563_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G76580/M1564_1.02/CISBP XX ID AT1G76580:M1564_1.02:CISBP XX NA AT1G76580 XX DE AT1G76580 XX OS Arabidopsis thaliana XX BF 11681; XX P0 A C G T 01 0.2741 0.2176 0.2631 0.2452 r 02 0.1967 0.3211 0.1681 0.3141 y 03 0.2027 0.3643 0.1762 0.2567 y 04 0.1864 0.0689 0.6197 0.1250 g 05 0.0969 0.1018 0.0882 0.7131 T 06 0.7131 0.0882 0.1018 0.0969 A 07 0.1250 0.6197 0.0689 0.1864 c 08 0.2567 0.1762 0.3643 0.2027 r 09 0.3141 0.1681 0.3211 0.1967 r 10 0.2452 0.2631 0.2176 0.2741 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G76580:M1564_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL5/M1565_1.02/CISBP XX ID SPL5:M1565_1.02:CISBP XX NA SPL5 XX DE SPL5 XX OS Arabidopsis thaliana XX BF 11682; XX P0 A C G T 01 0.1846 0.1721 0.2896 0.3537 k 02 0.2338 0.1953 0.2291 0.3418 t 03 0.1419 0.0533 0.7391 0.0657 G 04 0.0220 0.0367 0.0146 0.9267 T 05 0.9264 0.0674 0.0059 0.0002 A 06 0.0104 0.9742 0.0002 0.0152 C 07 0.0836 0.0601 0.7775 0.0787 G 08 0.1785 0.0588 0.5751 0.1876 g 09 0.2499 0.2992 0.1546 0.2962 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL5:M1565_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL12/M1566_1.02/CISBP XX ID SPL12:M1566_1.02:CISBP XX NA SPL12 XX DE SPL12 XX OS Arabidopsis thaliana XX BF 11683; XX P0 A C G T 01 0.2715 0.1820 0.2115 0.3350 w 02 0.1433 0.0487 0.7613 0.0468 G 03 0.0081 0.0380 0.0120 0.9418 T 04 0.9474 0.0458 0.0045 0.0022 A 05 0.0050 0.9935 0.0002 0.0013 C 06 0.0761 0.0777 0.7444 0.1018 G 07 0.2493 0.0534 0.5384 0.1589 g 08 0.2777 0.2615 0.1509 0.3100 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL12:M1566_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL7/M1567_1.02/CISBP XX ID SPL7:M1567_1.02:CISBP XX NA SPL7 XX DE SPL7 XX OS Arabidopsis thaliana XX BF 11684; XX P0 A C G T 01 0.2543 0.1098 0.2371 0.3988 w 02 0.1117 0.0284 0.8092 0.0507 G 03 0.0022 0.0132 0.0006 0.9840 T 04 0.9861 0.0071 0.0042 0.0026 A 05 0.0025 0.9940 0.0006 0.0029 C 06 0.0687 0.0397 0.6265 0.2651 k 07 0.5136 0.0792 0.2047 0.2026 a 08 0.1536 0.4174 0.1348 0.2942 y 09 0.3221 0.3157 0.1648 0.1973 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL7:M1567_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC B9GPL8_POPTR/M1568_1.02/CISBP XX ID B9GPL8_POPTR:M1568_1.02:CISBP XX NA B9GPL8_POPTR XX DE B9GPL8_POPTR XX OS Populus trichocarpa XX BF 11685; XX P0 A C G T 01 0.2008 0.2657 0.3245 0.2090 s 02 0.0093 0.0294 0.9543 0.0070 G 03 0.0079 0.0115 0.0987 0.8819 T 04 0.9515 0.0429 0.0052 0.0005 A 05 0.1528 0.7057 0.0293 0.1121 C 06 0.0415 0.0803 0.8588 0.0194 G 07 0.1877 0.0496 0.6956 0.0670 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=B9GPL8_POPTR:M1568_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.scaffold_194000034/M1570_1.02/CISBP XX ID fgenesh1_pg.scaffold_194000034:M1570_1.02:CISBP XX NA fgenesh1_pg.scaffold_194000034 XX DE fgenesh1_pg.scaffold_194000034 XX OS Physcomitrella patens XX BF 11687; XX P0 A C G T 01 0.2635 0.2198 0.2609 0.2558 d 02 0.2422 0.2907 0.1961 0.2710 y 03 0.2314 0.3071 0.2090 0.2524 y 04 0.1301 0.0452 0.7219 0.1027 G 05 0.0592 0.0949 0.1601 0.6858 T 06 0.6858 0.1601 0.0949 0.0592 A 07 0.1027 0.7219 0.0452 0.1301 C 08 0.2524 0.2090 0.3071 0.2314 r 09 0.2710 0.1961 0.2907 0.2422 r 10 0.2558 0.2609 0.2198 0.2635 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.scaffold_194000034:M1570_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.scaffold_252000020/M1571_1.02/CISBP XX ID fgenesh1_pg.scaffold_252000020:M1571_1.02:CISBP XX NA fgenesh1_pg.scaffold_252000020 XX DE fgenesh1_pg.scaffold_252000020 XX OS Physcomitrella patens XX BF 11688; XX P0 A C G T 01 0.2364 0.2536 0.2917 0.2183 s 02 0.2869 0.2519 0.2956 0.1655 v 03 0.1558 0.1542 0.5546 0.1354 g 04 0.0595 0.1405 0.2945 0.5054 k 05 0.6641 0.1003 0.1810 0.0545 a 06 0.0501 0.7157 0.0793 0.1550 C 07 0.2788 0.1813 0.4159 0.1240 r 08 0.2748 0.1842 0.3493 0.1917 r 09 0.2055 0.2746 0.2638 0.2561 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.scaffold_252000020:M1571_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ppa000682m/M1572_1.02/CISBP XX ID ppa000682m:M1572_1.02:CISBP XX NA ppa000682m XX DE ppa000682m XX OS Prunus persica XX BF 11689; XX P0 A C G T 01 0.2399 0.2705 0.2931 0.1964 s 02 0.2207 0.2834 0.3040 0.1919 s 03 0.2304 0.2546 0.2958 0.2192 s 04 0.1987 0.2526 0.3376 0.2110 s 05 0.1127 0.0960 0.7237 0.0677 G 06 0.0226 0.1178 0.0722 0.7874 T 07 0.8205 0.1370 0.0352 0.0073 A 08 0.0005 0.9960 0.0032 0.0003 C 09 0.1425 0.1077 0.6580 0.0918 g 10 0.2296 0.0862 0.5318 0.1524 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ppa000682m:M1572_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC INO/M1575_1.02/CISBP XX ID INO:M1575_1.02:CISBP XX NA INO XX DE INO XX OS Arabidopsis thaliana XX BF 11693; XX P0 A C G T 01 0.2422 0.2351 0.2327 0.2900 t 02 0.2446 0.2871 0.1812 0.2871 y 03 0.3316 0.1952 0.2072 0.2661 w 04 0.0322 0.3180 0.1255 0.5243 y 05 0.5096 0.0326 0.4566 0.0012 r 06 0.4076 0.1398 0.1384 0.3142 w 07 0.2286 0.2132 0.1332 0.4250 t 08 0.3491 0.1259 0.1507 0.3744 w 09 0.4276 0.1237 0.2255 0.2232 a 10 0.2861 0.2537 0.2140 0.2462 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=INO:M1575_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC YAB5/M1576_1.02/CISBP XX ID YAB5:M1576_1.02:CISBP XX NA YAB5 XX DE YAB5 XX OS Arabidopsis thaliana XX BF 8904; XX P0 A C G T 01 0.2402 0.2067 0.2354 0.3178 t 02 0.3164 0.1978 0.2079 0.2779 w 03 0.3481 0.2310 0.1781 0.2428 a 04 0.2810 0.1688 0.1671 0.3832 w 05 0.1763 0.4124 0.0668 0.3445 y 06 0.4786 0.0768 0.4418 0.0027 r 07 0.2557 0.1680 0.2609 0.3154 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=YAB5:M1576_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ASIL1/M1618_1.02/CISBP XX ID ASIL1:M1618_1.02:CISBP XX NA ASIL1 XX DE ASIL1 XX OS Arabidopsis thaliana XX BF 11722; XX P0 A C G T 01 0.2641 0.1966 0.2182 0.3211 w 02 0.2278 0.2832 0.1907 0.2983 y 03 0.3072 0.1014 0.3089 0.2826 d 04 0.2060 0.4386 0.0783 0.2770 y 05 0.0961 0.7124 0.0540 0.1375 C 06 0.1375 0.0540 0.7124 0.0961 G 07 0.2770 0.0783 0.4386 0.2060 r 08 0.2826 0.3089 0.1014 0.3072 h 09 0.2983 0.1907 0.2832 0.2278 r 10 0.3211 0.2182 0.1966 0.2641 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ASIL1:M1618_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G00238/M1619_1.02/CISBP XX ID AT4G00238:M1619_1.02:CISBP XX NA AT4G00238 XX DE AT4G00238 XX OS Arabidopsis thaliana XX BF 11723; XX P0 A C G T 01 0.2161 0.2384 0.2740 0.2714 k 02 0.1714 0.1801 0.3792 0.2693 k 03 0.2164 0.1972 0.3623 0.2242 g 04 0.1465 0.4698 0.1701 0.2136 c 05 0.1522 0.5450 0.1874 0.1154 c 06 0.1154 0.1874 0.5450 0.1522 g 07 0.2136 0.1701 0.4698 0.1465 g 08 0.2242 0.3623 0.1972 0.2164 c 09 0.2693 0.3792 0.1801 0.1714 m 10 0.2714 0.2740 0.2384 0.2161 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G00238:M1619_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G00270/M1620_1.02/CISBP XX ID AT4G00270:M1620_1.02:CISBP XX NA AT4G00270 XX DE AT4G00270 XX OS Arabidopsis thaliana XX BF 11724; XX P0 A C G T 01 0.2400 0.5595 0.0403 0.1601 c 02 0.1353 0.8102 0.0003 0.0543 C 03 0.0252 0.0002 0.9743 0.0002 G 04 0.0002 0.0002 0.9993 0.0002 G 05 0.0502 0.9493 0.0002 0.0002 C 06 0.0002 0.9993 0.0002 0.0002 C 07 0.0003 0.0003 0.9722 0.0273 G 08 0.2143 0.6066 0.0360 0.1430 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G00270:M1620_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os03g25430/M1621_1.02/CISBP XX ID LOC_Os03g25430:M1621_1.02:CISBP XX NA LOC_Os03g25430 XX DE LOC_Os03g25430 XX OS Oryza sativa XX BF 11725; XX P0 A C G T 01 0.2780 0.2566 0.1845 0.2808 h 02 0.2022 0.3611 0.2445 0.1923 c 03 0.2001 0.3574 0.2595 0.1829 s 04 0.1765 0.2505 0.4799 0.0931 s 05 0.6641 0.0005 0.3298 0.0056 r 06 0.1516 0.6528 0.0104 0.1852 c 07 0.2301 0.3870 0.1705 0.2124 c 08 0.2358 0.3215 0.2335 0.2092 c 09 0.2923 0.2254 0.2923 0.1901 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os03g25430:M1621_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PK14653.1/M1643_1.02/CISBP XX ID PK14653.1:M1643_1.02:CISBP XX NA PK14653.1 XX DE PK14653.1 XX OS Cannabis sativa XX BF 11747; XX P0 A C G T 01 0.0914 0.1435 0.6007 0.1644 g 02 0.0512 0.1105 0.1621 0.6763 t 03 0.0003 0.0000 0.9103 0.0894 G 04 0.0871 0.0000 0.8373 0.0757 G 05 0.0805 0.1096 0.6857 0.1242 G 06 0.1242 0.6857 0.1096 0.0805 C 07 0.0757 0.8373 0.0000 0.0871 C 08 0.0894 0.9103 0.0000 0.0003 C 09 0.6763 0.1621 0.1105 0.0512 a 10 0.1644 0.6007 0.1435 0.0914 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PK14653.1:M1643_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP24/M1644_1.02/CISBP XX ID TCP24:M1644_1.02:CISBP XX NA TCP24 XX DE TCP24 XX OS Arabidopsis thaliana XX BF 11748; XX P0 A C G T 01 0.0870 0.2487 0.1735 0.4908 t 02 0.0882 0.1673 0.5231 0.2214 g 03 0.0341 0.1089 0.6928 0.1641 G 04 0.0035 0.0576 0.2971 0.6417 k 05 0.0564 0.2908 0.4560 0.1969 s 06 0.1099 0.6454 0.0806 0.1640 c 07 0.1684 0.4623 0.1421 0.2273 c 08 0.2266 0.3059 0.1765 0.2910 y 09 0.1857 0.3453 0.2532 0.2158 s 10 0.1618 0.3565 0.1899 0.2919 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP24:M1644_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP3/M1645_1.02/CISBP XX ID TCP3:M1645_1.02:CISBP XX NA TCP3 XX DE TCP3 XX OS Arabidopsis thaliana XX BF 11749; XX P0 A C G T 01 0.1720 0.2393 0.3135 0.2752 k 02 0.1698 0.0522 0.5808 0.1972 g 03 0.0284 0.0219 0.9046 0.0450 G 04 0.0289 0.1220 0.7995 0.0496 G 05 0.6162 0.2431 0.0292 0.1115 a 06 0.0221 0.9597 0.0174 0.0008 C 07 0.0234 0.9742 0.0013 0.0012 C 08 0.7980 0.0662 0.1113 0.0246 A 09 0.0819 0.6688 0.1073 0.1420 c 10 0.2915 0.2974 0.1552 0.2559 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP3:M1645_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MEE35/M1646_1.02/CISBP XX ID MEE35:M1646_1.02:CISBP XX NA MEE35 XX DE MEE35 XX OS Arabidopsis thaliana XX BF 11750; XX P0 A C G T 01 0.1117 0.0011 0.7754 0.1117 G 02 0.0008 0.0008 0.9975 0.0008 G 03 0.0008 0.0008 0.9975 0.0008 G 04 0.8314 0.1669 0.0008 0.0008 A 05 0.0008 0.9975 0.0008 0.0008 C 06 0.0008 0.9975 0.0008 0.0008 C 07 0.9973 0.0009 0.0009 0.0009 A 08 0.0014 0.9957 0.0014 0.0014 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MEE35:M1646_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP20/M1647_1.02/CISBP XX ID TCP20:M1647_1.02:CISBP XX NA TCP20 XX DE TCP20 XX OS Arabidopsis thaliana XX BF 3891; XX P0 A C G T 01 0.0459 0.0305 0.8023 0.1212 G 02 0.1108 0.0233 0.7945 0.0714 G 03 0.0915 0.3564 0.4183 0.1338 s 04 0.0550 0.8777 0.0015 0.0658 C 05 0.0025 0.9965 0.0009 0.0001 C 06 0.0074 0.9562 0.0028 0.0335 C 07 0.8247 0.0606 0.0771 0.0375 A 08 0.0249 0.8246 0.0835 0.0670 C 09 0.3000 0.3382 0.1566 0.2052 m 10 0.2858 0.2271 0.2436 0.2436 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP20:M1647_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP2/M1648_1.02/CISBP XX ID TCP2:M1648_1.02:CISBP XX NA TCP2 XX DE TCP2 XX OS Arabidopsis thaliana XX BF 11751; XX P0 A C G T 01 0.2166 0.1681 0.4288 0.1865 g 02 0.0879 0.1942 0.1543 0.5636 t 03 0.0352 0.0000 0.8438 0.1211 G 04 0.0000 0.0000 0.9807 0.0193 G 05 0.0683 0.0778 0.5209 0.3329 k 06 0.3329 0.5209 0.0778 0.0683 m 07 0.0193 0.9807 0.0000 0.0000 C 08 0.1211 0.8438 0.0000 0.0352 C 09 0.5636 0.1543 0.1942 0.0879 a 10 0.1865 0.4288 0.1681 0.2166 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP2:M1648_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G51910/M1649_1.02/CISBP XX ID AT5G51910:M1649_1.02:CISBP XX NA AT5G51910 XX DE AT5G51910 XX OS Arabidopsis thaliana XX BF 11752; XX P0 A C G T 01 0.1482 0.2211 0.1810 0.4497 t 02 0.1366 0.1510 0.5064 0.2059 g 03 0.0322 0.0071 0.8462 0.1145 G 04 0.1118 0.0572 0.7781 0.0528 G 05 0.1895 0.2827 0.4093 0.1184 s 06 0.1094 0.7388 0.0221 0.1297 C 07 0.0134 0.9610 0.0006 0.0250 C 08 0.0002 0.9986 0.0003 0.0010 C 09 0.8406 0.0292 0.1283 0.0019 A 10 0.0005 0.8124 0.1056 0.0815 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G51910:M1649_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP5/M1650_1.02/CISBP XX ID TCP5:M1650_1.02:CISBP XX NA TCP5 XX DE TCP5 XX OS Arabidopsis thaliana XX BF 11753; XX P0 A C G T 01 0.0025 0.0025 0.9926 0.0025 G 02 0.0017 0.0017 0.9950 0.0017 G 03 0.0017 0.0017 0.9950 0.0017 G 04 0.9950 0.0017 0.0017 0.0017 A 05 0.0017 0.9950 0.0017 0.0017 C 06 0.0017 0.9950 0.0017 0.0017 C 07 0.9950 0.0017 0.0017 0.0017 A 08 0.0025 0.7450 0.0025 0.2500 Y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP5:M1650_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002893560.1/M1651_1.02/CISBP XX ID XM_002893560.1:M1651_1.02:CISBP XX NA XM_002893560.1 XX DE XM_002893560.1 XX OS Arabidopsis lyrata XX BF 11754; XX P0 A C G T 01 0.3288 0.2039 0.2977 0.1697 r 02 0.1099 0.2388 0.2191 0.4322 t 03 0.1455 0.0410 0.5582 0.2554 k 04 0.0592 0.1206 0.5497 0.2705 k 05 0.1504 0.2601 0.3246 0.2649 b 06 0.2649 0.3246 0.2601 0.1504 v 07 0.2705 0.5497 0.1206 0.0592 m 08 0.2554 0.5582 0.0410 0.1455 m 09 0.4322 0.2191 0.2388 0.1099 a 10 0.1697 0.2977 0.2039 0.3288 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002893560.1:M1651_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002876964.1/M1652_1.02/CISBP XX ID XM_002876964.1:M1652_1.02:CISBP XX NA XM_002876964.1 XX DE XM_002876964.1 XX OS Arabidopsis lyrata XX BF 11755; BF 11757; XX P0 A C G T 01 0.0025 0.0025 0.9926 0.0025 G 02 0.2500 0.0025 0.7450 0.0025 R 03 0.0025 0.4975 0.4975 0.0025 s 04 0.0025 0.9926 0.0025 0.0025 C 05 0.0025 0.9926 0.0025 0.0025 C 06 0.0025 0.9926 0.0025 0.0025 C 07 0.9926 0.0025 0.0025 0.0025 A 08 0.0033 0.9901 0.0033 0.0033 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002876964.1:M1652_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002867953.1/M1653_1.02/CISBP XX ID XM_002867953.1:M1653_1.02:CISBP XX NA XM_002867953.1 XX DE XM_002867953.1 XX OS Arabidopsis lyrata XX BF 11756; XX P0 A C G T 01 0.0033 0.0033 0.9901 0.0033 G 02 0.0033 0.0033 0.9901 0.0033 G 03 0.0033 0.3322 0.6612 0.0033 s 04 0.3322 0.6612 0.0033 0.0033 m 05 0.0033 0.9901 0.0033 0.0033 C 06 0.0033 0.9901 0.0033 0.0033 C 07 0.9901 0.0033 0.0033 0.0033 A 08 0.0049 0.9853 0.0049 0.0049 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002867953.1:M1653_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC XM_002866361.1/M1655_1.02/CISBP XX ID XM_002866361.1:M1655_1.02:CISBP XX NA XM_002866361.1 XX DE XM_002866361.1 XX OS Arabidopsis lyrata XX BF 11758; XX P0 A C G T 01 0.0033 0.0033 0.9901 0.0033 G 02 0.0020 0.0020 0.9940 0.0020 G 03 0.0020 0.0020 0.9940 0.0020 G 04 0.9940 0.0020 0.0020 0.0020 A 05 0.0020 0.9940 0.0020 0.0020 C 06 0.0020 0.9940 0.0020 0.0020 C 07 0.9940 0.0020 0.0020 0.0020 A 08 0.0033 0.9901 0.0033 0.0033 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=XM_002866361.1:M1655_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GSVIVG00027588001/M1656_1.02/CISBP XX ID GSVIVG00027588001:M1656_1.02:CISBP XX NA GSVIVG00027588001 XX DE GSVIVG00027588001 XX OS Vitis vinifera XX BF 11759; XX P0 A C G T 01 0.1474 0.2243 0.2071 0.4212 t 02 0.1390 0.1895 0.5100 0.1615 g 03 0.0063 0.0033 0.9511 0.0392 G 04 0.0530 0.0065 0.9248 0.0158 G 05 0.1375 0.1375 0.5520 0.1730 g 06 0.0666 0.8196 0.0299 0.0838 C 07 0.0127 0.9734 0.0101 0.0038 C 08 0.0039 0.9656 0.0001 0.0303 C 09 0.8916 0.0175 0.0747 0.0162 A 10 0.0002 0.8754 0.0606 0.0637 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GSVIVG00027588001:M1656_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LOC_Os02g42380/M1657_1.02/CISBP XX ID LOC_Os02g42380:M1657_1.02:CISBP XX NA LOC_Os02g42380 XX DE LOC_Os02g42380 XX OS Oryza sativa XX BF 11760; XX P0 A C G T 01 0.1753 0.1309 0.4143 0.2794 k 02 0.0739 0.1461 0.3345 0.4454 k 03 0.0000 0.0000 0.9287 0.0713 G 04 0.0000 0.0000 1.0000 0.0000 G 05 0.1267 0.1008 0.6609 0.1116 g 06 0.1116 0.6609 0.1008 0.1267 c 07 0.0000 1.0000 0.0000 0.0000 C 08 0.0713 0.9287 0.0000 0.0000 C 09 0.4454 0.3345 0.1461 0.0739 m 10 0.2794 0.4143 0.1309 0.1753 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LOC_Os02g42380:M1657_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OsI_08196/M1658_1.02/CISBP XX ID OsI_08196:M1658_1.02:CISBP XX NA OsI_08196 XX DE OsI_08196 XX OS Oryza sativa XX BF 11761; XX P0 A C G T 01 0.0005 0.0005 0.9459 0.0530 G 02 0.0458 0.0005 0.9533 0.0005 G 03 0.0912 0.0912 0.7264 0.0912 G 04 0.0005 0.8625 0.0458 0.0912 C 05 0.0005 0.9986 0.0005 0.0005 C 06 0.0005 0.9986 0.0005 0.0005 C 07 0.8987 0.0504 0.0504 0.0005 A 08 0.0007 0.8554 0.0719 0.0719 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OsI_08196:M1658_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC scaffold_301743.1/M1659_1.02/CISBP XX ID scaffold_301743.1:M1659_1.02:CISBP XX NA scaffold_301743.1 XX DE scaffold_301743.1 XX OS Arabidopsis lyrata XX BF 11762; XX P0 A C G T 01 0.0925 0.2779 0.1669 0.4628 y 02 0.0273 0.0788 0.4915 0.4024 k 03 0.0357 0.0044 0.8770 0.0828 G 04 0.0165 0.0073 0.9573 0.0188 G 05 0.0399 0.1249 0.8265 0.0087 G 06 0.7565 0.2146 0.0072 0.0217 A 07 0.0024 0.9486 0.0472 0.0018 C 08 0.0007 0.9954 0.0024 0.0015 C 09 0.8622 0.0020 0.1316 0.0043 A 10 0.0199 0.9066 0.0062 0.0673 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=scaffold_301743.1:M1659_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC cassava45561.m1/M1660_1.02/CISBP XX ID cassava45561.m1:M1660_1.02:CISBP XX NA cassava45561.m1 XX DE cassava45561.m1 XX OS Manihot esculenta XX BF 11763; XX P0 A C G T 01 0.0839 0.1383 0.5894 0.1885 g 02 0.0203 0.0121 0.8988 0.0688 G 03 0.1022 0.0245 0.8346 0.0387 G 04 0.1536 0.3002 0.4217 0.1245 s 05 0.0366 0.8798 0.0114 0.0722 C 06 0.0050 0.9640 0.0074 0.0236 C 07 0.0012 0.9792 0.0028 0.0167 C 08 0.8936 0.0167 0.0844 0.0053 A 09 0.0055 0.9090 0.0374 0.0481 C 10 0.2667 0.4019 0.1063 0.2250 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=cassava45561.m1:M1660_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Glyma19g26560.1/M1661_1.02/CISBP XX ID Glyma19g26560.1:M1661_1.02:CISBP XX NA Glyma19g26560.1 XX DE Glyma19g26560.1 XX OS Glycine max XX BF 11764; XX P0 A C G T 01 0.1038 0.1989 0.4796 0.2177 g 02 0.0193 0.0139 0.9076 0.0592 G 03 0.0864 0.0189 0.8614 0.0334 G 04 0.1086 0.3073 0.4404 0.1437 s 05 0.0418 0.8825 0.0272 0.0486 C 06 0.0028 0.9962 0.0008 0.0002 C 07 0.0037 0.9759 0.0004 0.0200 C 08 0.8962 0.0174 0.0758 0.0106 A 09 0.0171 0.8441 0.0498 0.0890 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Glyma19g26560.1:M1661_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LjSGA_053525.1/M1662_1.02/CISBP XX ID LjSGA_053525.1:M1662_1.02:CISBP XX NA LjSGA_053525.1 XX DE LjSGA_053525.1 XX OS Lotus japonicus XX BF 11765; XX P0 A C G T 01 0.0014 0.0014 0.9957 0.0014 G 02 0.0014 0.0014 0.9957 0.0014 G 03 0.1435 0.1435 0.5696 0.1435 g 04 0.0014 0.9957 0.0014 0.0014 C 05 0.0014 0.9957 0.0014 0.0014 C 06 0.0014 0.9957 0.0014 0.0014 C 07 0.9950 0.0017 0.0017 0.0017 A 08 0.0025 0.9926 0.0025 0.0025 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LjSGA_053525.1:M1662_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LjT20A21.20.nc/M1663_1.02/CISBP XX ID LjT20A21.20.nc:M1663_1.02:CISBP XX NA LjT20A21.20.nc XX DE LjT20A21.20.nc XX OS Lotus japonicus XX BF 11766; XX P0 A C G T 01 0.0504 0.0005 0.7490 0.2001 G 02 0.0004 0.0004 0.9989 0.0004 G 03 0.0004 0.0004 0.9989 0.0004 G 04 0.9276 0.0717 0.0004 0.0004 A 05 0.0004 0.9989 0.0004 0.0004 C 06 0.0004 0.9989 0.0004 0.0004 C 07 0.8790 0.0403 0.0803 0.0004 A 08 0.0593 0.5874 0.0593 0.2940 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LjT20A21.20.nc:M1663_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AtGRF6/M1677_1.02/CISBP XX ID AtGRF6:M1677_1.02:CISBP XX NA AtGRF6 XX DE AtGRF6 XX OS Arabidopsis thaliana XX BF 11810; XX P0 A C G T 01 0.2569 0.2783 0.1574 0.3075 h 02 0.1529 0.5178 0.1867 0.1425 c 03 0.2180 0.1992 0.0021 0.5807 t 04 0.2092 0.0120 0.6809 0.0979 G 05 0.3792 0.2567 0.1621 0.2020 m 06 0.3399 0.3137 0.1654 0.1810 m 07 0.3440 0.2215 0.2400 0.1945 a 08 0.2818 0.2450 0.2307 0.2425 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AtGRF6:M1677_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY14/M1678_1.02/CISBP XX ID WRKY14:M1678_1.02:CISBP XX NA WRKY14 XX DE WRKY14 XX OS Arabidopsis thaliana XX BF 11811; XX P0 A C G T 01 0.3326 0.1900 0.2185 0.2590 w 02 0.3918 0.0901 0.4374 0.0807 r 03 0.0120 0.0071 0.9307 0.0502 G 04 0.0157 0.0000 0.0000 0.9843 T 05 0.0459 0.9306 0.0142 0.0093 C 06 0.8825 0.0624 0.0188 0.0363 A 07 0.8491 0.0165 0.1071 0.0272 A 08 0.2193 0.5784 0.0598 0.1426 c 09 0.1605 0.1865 0.4588 0.1941 g 10 0.2280 0.2842 0.2730 0.2148 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY14:M1678_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY63/M1679_1.02/CISBP XX ID WRKY63:M1679_1.02:CISBP XX NA WRKY63 XX DE WRKY63 XX OS Arabidopsis thaliana XX BF 11812; XX P0 A C G T 01 0.2001 0.3713 0.1430 0.2857 y 02 0.1569 0.0002 0.8427 0.0002 G 03 0.0002 0.0002 0.9995 0.0002 G 04 0.0002 0.0002 0.0002 0.9995 T 05 0.0002 0.9995 0.0002 0.0002 C 06 0.9995 0.0002 0.0002 0.0002 A 07 0.9809 0.0002 0.0002 0.0187 A 08 0.1283 0.5126 0.2308 0.1283 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY63:M1679_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY57/M1680_1.02/CISBP XX ID WRKY57:M1680_1.02:CISBP XX NA WRKY57 XX DE WRKY57 XX OS Arabidopsis thaliana XX BF 11813; XX P0 A C G T 01 0.3982 0.1771 0.2017 0.2229 a 02 0.4083 0.1728 0.1611 0.2578 w 03 0.4987 0.0761 0.3117 0.1135 r 04 0.0380 0.0173 0.8697 0.0750 G 05 0.0302 0.0001 0.0004 0.9694 T 06 0.0518 0.9136 0.0073 0.0273 C 07 0.8786 0.0483 0.0233 0.0498 A 08 0.8172 0.0140 0.1128 0.0560 A 09 0.2597 0.5075 0.0873 0.1454 m 10 0.1993 0.2075 0.3857 0.2075 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY57:M1680_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY40/M1681_1.02/CISBP XX ID WRKY40:M1681_1.02:CISBP XX NA WRKY40 XX DE WRKY40 XX OS Arabidopsis thaliana XX BF 11814; XX P0 A C G T 01 0.2463 0.2668 0.2037 0.2833 y 02 0.3781 0.1271 0.4393 0.0554 r 03 0.0013 0.0010 0.9116 0.0861 G 04 0.0323 0.0001 0.0001 0.9674 T 05 0.0225 0.9768 0.0001 0.0007 C 06 0.6719 0.1484 0.0494 0.1303 a 07 0.5908 0.1047 0.1229 0.1815 a 08 0.2470 0.2702 0.2702 0.2126 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY40:M1681_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY15/M1682_1.02/CISBP XX ID WRKY15:M1682_1.02:CISBP XX NA WRKY15 XX DE WRKY15 XX OS Arabidopsis thaliana XX BF 11815; XX P0 A C G T 01 0.3091 0.1971 0.2481 0.2456 a 02 0.3684 0.0965 0.4637 0.0715 r 03 0.0040 0.0085 0.9485 0.0391 G 04 0.0088 0.0029 0.0039 0.9844 T 05 0.0303 0.9646 0.0024 0.0027 C 06 0.8068 0.1039 0.0264 0.0630 A 07 0.7463 0.0350 0.1537 0.0650 A 08 0.2530 0.5250 0.0885 0.1334 m 09 0.1888 0.2376 0.3957 0.1778 g 10 0.2142 0.2921 0.2751 0.2186 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY15:M1682_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATWRKY17/M1683_1.02/CISBP XX ID ATWRKY17:M1683_1.02:CISBP XX NA ATWRKY17 XX DE ATWRKY17 XX OS Arabidopsis thaliana XX BF 11816; XX P0 A C G T 01 0.3379 0.2159 0.1973 0.2489 a 02 0.4064 0.1462 0.2020 0.2454 a 03 0.4141 0.1160 0.3284 0.1414 r 04 0.0578 0.0283 0.8031 0.1108 G 05 0.0631 0.0045 0.0001 0.9323 T 06 0.0823 0.8594 0.0101 0.0482 C 07 0.7633 0.0896 0.0319 0.1151 A 08 0.7342 0.0166 0.1876 0.0616 A 09 0.2498 0.4957 0.0633 0.1912 c 10 0.2070 0.1803 0.3908 0.2219 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATWRKY17:M1683_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY60/M1684_1.02/CISBP XX ID WRKY60:M1684_1.02:CISBP XX NA WRKY60 XX DE WRKY60 XX OS Arabidopsis thaliana XX BF 11817; XX P0 A C G T 01 0.2695 0.2782 0.2692 0.1831 v 02 0.1055 0.4086 0.1055 0.3804 y 03 0.1362 0.0222 0.8195 0.0222 G 04 0.0001 0.0001 0.9996 0.0001 G 05 0.0001 0.0001 0.0001 0.9996 T 06 0.0001 0.9996 0.0001 0.0001 C 07 0.9996 0.0001 0.0001 0.0001 A 08 0.9996 0.0001 0.0001 0.0001 A 09 0.2579 0.6080 0.0671 0.0671 m 10 0.1446 0.2457 0.4650 0.1446 g 11 0.2280 0.2280 0.2280 0.3161 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY60:M1684_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY25/M1685_1.02/CISBP XX ID WRKY25:M1685_1.02:CISBP XX NA WRKY25 XX DE WRKY25 XX OS Arabidopsis thaliana XX BF 11818; XX P0 A C G T 01 0.0590 0.4997 0.1178 0.3234 y 02 0.2653 0.0002 0.7343 0.0002 R 03 0.0002 0.0002 0.9995 0.0002 G 04 0.0002 0.0002 0.0002 0.9995 T 05 0.0002 0.9995 0.0002 0.0002 C 06 0.9994 0.0002 0.0002 0.0002 A 07 0.9033 0.0002 0.0578 0.0386 A 08 0.1843 0.6312 0.0791 0.1054 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY25:M1685_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY21/M1686_1.02/CISBP XX ID WRKY21:M1686_1.02:CISBP XX NA WRKY21 XX DE WRKY21 XX OS Arabidopsis thaliana XX BF 11819; XX P0 A C G T 01 0.2809 0.2232 0.2492 0.2467 a 02 0.3210 0.1947 0.2240 0.2602 w 03 0.4027 0.0872 0.4067 0.1034 r 04 0.0511 0.0002 0.9101 0.0386 G 05 0.0906 0.0035 0.0018 0.9041 T 06 0.0005 0.9988 0.0001 0.0006 C 07 0.8688 0.0665 0.0211 0.0437 A 08 0.7805 0.0102 0.1624 0.0470 A 09 0.2081 0.6066 0.0652 0.1201 c 10 0.1594 0.2088 0.4291 0.2027 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY21:M1686_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY33/M1687_1.02/CISBP XX ID WRKY33:M1687_1.02:CISBP XX NA WRKY33 XX DE WRKY33 XX OS Arabidopsis thaliana XX BF 11820; XX P0 A C G T 01 0.2670 0.2416 0.2298 0.2617 w 02 0.2268 0.2689 0.2012 0.3031 y 03 0.3711 0.1273 0.4101 0.0915 r 04 0.0314 0.0004 0.7944 0.1738 G 05 0.0128 0.0002 0.0044 0.9826 T 06 0.1005 0.8892 0.0005 0.0098 C 07 0.6127 0.1573 0.0789 0.1511 a 08 0.5304 0.0826 0.2051 0.1819 a 09 0.3106 0.3608 0.1512 0.1774 m 10 0.2434 0.2292 0.3094 0.2180 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY33:M1687_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY43/M1688_1.02/CISBP XX ID WRKY43:M1688_1.02:CISBP XX NA WRKY43 XX DE WRKY43 XX OS Arabidopsis thaliana XX BF 11821; XX P0 A C G T 01 0.3737 0.2125 0.1687 0.2451 a 02 0.5092 0.0916 0.3416 0.0577 r 03 0.0532 0.0177 0.8772 0.0519 G 04 0.0739 0.0142 0.0042 0.9076 T 05 0.0865 0.8915 0.0111 0.0109 C 06 0.7976 0.0622 0.0608 0.0794 A 07 0.7653 0.0322 0.1314 0.0711 A 08 0.2565 0.4596 0.1078 0.1761 m 09 0.3315 0.1958 0.3099 0.1628 r 10 0.2313 0.3113 0.2179 0.2395 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY43:M1688_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY23/M1689_1.02/CISBP XX ID WRKY23:M1689_1.02:CISBP XX NA WRKY23 XX DE WRKY23 XX OS Arabidopsis thaliana XX BF 11822; XX P0 A C G T 01 0.6982 0.0010 0.2998 0.0010 R 02 0.0008 0.0008 0.9977 0.0008 G 03 0.0008 0.0008 0.0008 0.9977 T 04 0.0008 0.9977 0.0008 0.0008 C 05 0.9977 0.0008 0.0008 0.0008 A 06 0.9977 0.0008 0.0008 0.0008 A 07 0.1669 0.8314 0.0008 0.0008 C 08 0.1435 0.1435 0.7116 0.0014 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY23:M1689_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY22/M1690_1.02/CISBP XX ID WRKY22:M1690_1.02:CISBP XX NA WRKY22 XX DE WRKY22 XX OS Arabidopsis thaliana XX BF 11823; XX P0 A C G T 01 0.2764 0.2403 0.2332 0.2501 w 02 0.3193 0.1898 0.2295 0.2614 w 03 0.3378 0.1564 0.3311 0.1746 r 04 0.1285 0.0845 0.6117 0.1753 g 05 0.1613 0.0435 0.0201 0.7751 T 06 0.2086 0.6204 0.0919 0.0791 c 07 0.5959 0.1499 0.0783 0.1759 a 08 0.5491 0.0573 0.2232 0.1704 a 09 0.2811 0.3757 0.1328 0.2104 m 10 0.2313 0.2200 0.3030 0.2456 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY22:M1690_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY47/M1691_1.02/CISBP XX ID WRKY47:M1691_1.02:CISBP XX NA WRKY47 XX DE WRKY47 XX OS Arabidopsis thaliana XX BF 11824; XX P0 A C G T 01 0.3769 0.2077 0.2077 0.2077 a 02 0.3856 0.1427 0.1427 0.3290 w 03 0.4833 0.0398 0.4371 0.0398 r 04 0.1673 0.0001 0.8325 0.0001 G 05 0.0001 0.0001 0.0001 0.9997 T 06 0.2479 0.7519 0.0001 0.0001 C 07 0.9997 0.0001 0.0001 0.0001 A 08 0.9191 0.0001 0.0001 0.0807 A 09 0.0424 0.7942 0.0424 0.1210 C 10 0.1074 0.1074 0.5992 0.1860 g 11 0.2817 0.2978 0.2103 0.2103 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY47:M1691_1.02:CISBP XX RN [1]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY29/M1692_1.02/CISBP XX ID WRKY29:M1692_1.02:CISBP XX NA WRKY29 XX DE WRKY29 XX OS Arabidopsis thaliana XX BF 11825; XX P0 A C G T 01 0.2829 0.2363 0.2248 0.2560 w 02 0.2884 0.2136 0.2291 0.2689 w 03 0.3318 0.1715 0.3352 0.1615 r 04 0.0669 0.0239 0.7160 0.1932 G 05 0.0703 0.0003 0.0018 0.9276 T 06 0.1896 0.7389 0.0343 0.0372 C 07 0.6114 0.1420 0.0896 0.1569 a 08 0.5385 0.0721 0.2256 0.1638 a 09 0.2784 0.4030 0.1263 0.1923 m 10 0.2274 0.2251 0.3132 0.2343 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY29:M1692_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY11/M1693_1.02/CISBP XX ID WRKY11:M1693_1.02:CISBP XX NA WRKY11 XX DE WRKY11 XX OS Arabidopsis thaliana XX BF 2988; XX P0 A C G T 01 0.3617 0.1524 0.2200 0.2660 w 02 0.4102 0.1103 0.3207 0.1588 r 03 0.0845 0.0402 0.7776 0.0977 G 04 0.0918 0.0027 0.0039 0.9016 T 05 0.1207 0.8099 0.0245 0.0448 C 06 0.8343 0.0534 0.0616 0.0507 A 07 0.7825 0.0000 0.1656 0.0519 A 08 0.2130 0.5449 0.0724 0.1698 c 09 0.1789 0.1627 0.4390 0.2194 g 10 0.2500 0.2117 0.2724 0.2659 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY11:M1693_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY18/M1694_1.02/CISBP XX ID WRKY18:M1694_1.02:CISBP XX NA WRKY18 XX DE WRKY18 XX OS Arabidopsis thaliana XX BF 11826; XX P0 A C G T 01 0.2896 0.2620 0.2041 0.2443 m 02 0.2577 0.2791 0.1517 0.3116 h 03 0.3918 0.0160 0.5845 0.0077 r 04 0.0011 0.0006 0.9877 0.0105 G 05 0.0005 0.0004 0.0023 0.9968 T 06 0.0011 0.9969 0.0003 0.0017 C 07 0.9845 0.0080 0.0023 0.0052 A 08 0.9638 0.0096 0.0109 0.0157 A 09 0.1864 0.3716 0.2894 0.1526 s 10 0.2122 0.2541 0.3984 0.1353 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY18:M1694_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY62/M1695_1.02/CISBP XX ID WRKY62:M1695_1.02:CISBP XX NA WRKY62 XX DE WRKY62 XX OS Arabidopsis thaliana XX BF 11827; XX P0 A C G T 01 0.1256 0.1256 0.0012 0.7475 T 02 0.3075 0.0008 0.6910 0.0008 R 03 0.0007 0.0007 0.9979 0.0007 G 04 0.0007 0.0007 0.0007 0.9979 T 05 0.0007 0.9979 0.0007 0.0007 C 06 0.9979 0.0007 0.0007 0.0007 A 07 0.9979 0.0007 0.0007 0.0007 A 08 0.2726 0.7255 0.0009 0.0009 M XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY62:M1695_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY75/M1696_1.02/CISBP XX ID WRKY75:M1696_1.02:CISBP XX NA WRKY75 XX DE WRKY75 XX OS Arabidopsis thaliana XX BF 11828; XX P0 A C G T 01 0.3023 0.2790 0.1396 0.2790 h 02 0.4998 0.0174 0.4826 0.0002 r 03 0.0001 0.0001 0.9996 0.0001 G 04 0.0001 0.0001 0.0001 0.9996 T 05 0.0001 0.9996 0.0001 0.0001 C 06 0.9996 0.0001 0.0001 0.0001 A 07 0.9996 0.0001 0.0001 0.0001 A 08 0.2600 0.6197 0.0002 0.1201 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY75:M1696_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY30/M1697_1.02/CISBP XX ID WRKY30:M1697_1.02:CISBP XX NA WRKY30 XX DE WRKY30 XX OS Arabidopsis thaliana XX BF 11829; XX P0 A C G T 01 0.3952 0.1315 0.4367 0.0366 r 02 0.0012 0.0063 0.9891 0.0034 G 03 0.0009 0.0025 0.0007 0.9960 T 04 0.0234 0.9758 0.0004 0.0005 C 05 0.9034 0.0555 0.0144 0.0267 A 06 0.8605 0.0198 0.0781 0.0416 A 07 0.0618 0.7834 0.0444 0.1104 C 08 0.1298 0.2273 0.4811 0.1618 g 09 0.2046 0.3274 0.2654 0.2026 s 10 0.2143 0.2208 0.2515 0.3134 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY30:M1697_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY8/M1698_1.02/CISBP XX ID WRKY8:M1698_1.02:CISBP XX NA WRKY8 XX DE WRKY8 XX OS Arabidopsis thaliana XX BF 11830; XX P0 A C G T 01 0.2995 0.2028 0.2241 0.2737 w 02 0.3761 0.1240 0.4034 0.0965 r 03 0.0200 0.0007 0.8834 0.0959 G 04 0.0108 0.0001 0.0007 0.9884 T 05 0.0427 0.9480 0.0000 0.0092 C 06 0.8043 0.0918 0.0279 0.0759 A 07 0.7219 0.0322 0.1627 0.0832 A 08 0.2535 0.4666 0.1198 0.1601 m 09 0.2156 0.2177 0.3736 0.1931 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY8:M1698_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY48/M1699_1.02/CISBP XX ID WRKY48:M1699_1.02:CISBP XX NA WRKY48 XX DE WRKY48 XX OS Arabidopsis thaliana XX BF 11831; XX P0 A C G T 01 0.2624 0.2374 0.2651 0.2351 r 02 0.2625 0.2305 0.2522 0.2548 d 03 0.3257 0.1538 0.4099 0.1106 r 04 0.0213 0.0002 0.8689 0.1096 G 05 0.0214 0.0001 0.0003 0.9781 T 06 0.0625 0.9302 0.0009 0.0064 C 07 0.6618 0.1447 0.0664 0.1271 a 08 0.5379 0.0758 0.2276 0.1588 a 09 0.2692 0.3858 0.1553 0.1897 m 10 0.2343 0.2320 0.3131 0.2206 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY48:M1699_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY27/M1700_1.02/CISBP XX ID WRKY27:M1700_1.02:CISBP XX NA WRKY27 XX DE WRKY27 XX OS Arabidopsis thaliana XX BF 11832; XX P0 A C G T 01 0.2713 0.2177 0.2504 0.2606 d 02 0.2938 0.1800 0.3773 0.1489 r 03 0.0374 0.0012 0.8477 0.1136 G 04 0.0570 0.0072 0.0080 0.9278 T 05 0.1352 0.7706 0.0464 0.0478 C 06 0.5793 0.1595 0.1170 0.1443 a 07 0.5124 0.0908 0.2279 0.1689 a 08 0.2648 0.3951 0.1590 0.1811 m 09 0.2345 0.2345 0.3166 0.2143 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY27:M1700_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATWRKY2/M1701_1.02/CISBP XX ID ATWRKY2:M1701_1.02:CISBP XX NA ATWRKY2 XX DE ATWRKY2 XX OS Arabidopsis thaliana XX BF 11833; XX P0 A C G T 01 0.1148 0.3933 0.2459 0.2459 c 02 0.2766 0.0107 0.7126 0.0001 R 03 0.0001 0.0001 0.9997 0.0001 G 04 0.0001 0.0001 0.0001 0.9997 T 05 0.0001 0.9997 0.0001 0.0001 C 06 0.9613 0.0193 0.0193 0.0001 A 07 0.8059 0.0001 0.1633 0.0307 A 08 0.2714 0.5284 0.0715 0.1286 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATWRKY2:M1701_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY51/M1702_1.02/CISBP XX ID WRKY51:M1702_1.02:CISBP XX NA WRKY51 XX DE WRKY51 XX OS Arabidopsis thaliana XX BF 11834; XX P0 A C G T 01 0.2780 0.2393 0.2101 0.2725 w 02 0.2776 0.2803 0.1617 0.2803 h 03 0.3867 0.1108 0.4404 0.0620 r 04 0.0437 0.0014 0.8516 0.1033 G 05 0.1255 0.0010 0.0001 0.8734 T 06 0.1241 0.8214 0.0274 0.0271 C 07 0.7113 0.1451 0.0473 0.0963 A 08 0.6957 0.0663 0.0932 0.1447 A 09 0.3016 0.3834 0.1622 0.1528 m 10 0.2310 0.2453 0.3345 0.1892 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY51:M1702_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC 0700010421/M1703_1.02/CISBP XX ID 0700010421:M1703_1.02:CISBP XX NA 0700010421 XX DE 0700010421 XX OS Ostreococcus tauri XX BF 11835; XX P0 A C G T 01 0.4295 0.1596 0.1596 0.2512 w 02 0.1575 0.2883 0.0697 0.4846 y 03 0.2878 0.0214 0.6695 0.0214 r 04 0.1091 0.0214 0.7622 0.1073 G 05 0.1073 0.0214 0.0214 0.8499 T 06 0.0880 0.8270 0.0002 0.0847 C 07 0.9115 0.0002 0.0002 0.0880 A 08 0.9993 0.0002 0.0002 0.0002 A 09 0.0906 0.7282 0.0906 0.0906 C 10 0.2651 0.1806 0.3738 0.1806 r 11 0.2289 0.2289 0.3134 0.2289 g 12 0.2289 0.2289 0.2289 0.3134 t 13 0.3134 0.2289 0.2289 0.2289 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=0700010421:M1703_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC fgenesh1_pg.C_Chr_11.0001000193/M1704_1.02/CISBP XX ID fgenesh1_pg.C_Chr_11.0001000193:M1704_1.02:CISBP XX NA fgenesh1_pg.C_Chr_11.0001000193 XX DE fgenesh1_pg.C_Chr_11.0001000193 XX OS Ostreococcus tauri XX BF 11836; XX P0 A C G T 01 0.2416 0.2592 0.2322 0.2670 y 02 0.3400 0.1166 0.4544 0.0890 r 03 0.0904 0.0182 0.7915 0.0999 G 04 0.1157 0.0001 0.0034 0.8808 T 05 0.1574 0.7490 0.0412 0.0524 C 06 0.7582 0.0791 0.0434 0.1192 A 07 0.6500 0.0299 0.1807 0.1394 a 08 0.2542 0.4150 0.1327 0.1980 m 09 0.2318 0.2295 0.3289 0.2097 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=fgenesh1_pg.C_Chr_11.0001000193:M1704_1.02:CISBP XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC O22676_ANTMA/M2679_1.02/CISBP XX ID O22676_ANTMA:M2679_1.02:CISBP XX NA O22676_ANTMA XX DE O22676_ANTMA XX OS Antirrhinum majus XX BF 1339; XX P0 A C G T 01 0.0000 0.0000 1.0000 0.0000 G 02 0.7778 0.0000 0.2222 0.0000 A 03 0.0000 0.0000 0.0000 1.0000 T 04 0.0000 0.0000 1.0000 0.0000 G 05 1.0000 0.0000 0.0000 0.0000 A 06 0.0000 1.0000 0.0000 0.0000 C 07 0.0000 0.0000 1.0000 0.0000 G 08 0.0000 0.0000 0.0000 1.0000 T 09 0.0000 0.0000 1.0000 0.0000 G 10 0.0000 0.0000 0.9444 0.0556 G 11 0.0000 1.0000 0.0000 0.0000 C 12 0.5556 0.4444 0.0000 0.0000 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=O22676_ANTMA:M2679_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC O22677_ANTMA/M2681_1.02/CISBP XX ID O22677_ANTMA:M2681_1.02:CISBP XX NA O22677_ANTMA XX DE O22677_ANTMA XX OS Antirrhinum majus XX BF 1340; XX P0 A C G T 01 0.0455 0.0000 0.9545 0.0000 G 02 0.4545 0.0000 0.5455 0.0000 r 03 0.0000 0.0000 0.0000 1.0000 T 04 0.0000 0.0000 1.0000 0.0000 G 05 1.0000 0.0000 0.0000 0.0000 A 06 0.0000 1.0000 0.0000 0.0000 C 07 0.0000 0.0000 1.0000 0.0000 G 08 0.0000 0.0000 0.0000 1.0000 T 09 0.0000 0.0000 1.0000 0.0000 G 10 0.0000 0.0000 1.0000 0.0000 G 11 0.1818 0.8182 0.0000 0.0000 C 12 0.0455 0.9545 0.0000 0.0000 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=O22677_ANTMA:M2681_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Q9SXJ0_TOBAC/M2786_1.02/CISBP XX ID Q9SXJ0_TOBAC:M2786_1.02:CISBP XX NA Q9SXJ0_TOBAC XX DE Q9SXJ0_TOBAC XX OS Nicotiana tabacum XX BF 2042; XX P0 A C G T 01 0.0500 0.8500 0.0000 0.1000 C 02 0.1000 0.7500 0.0500 0.1000 C 03 0.7000 0.0500 0.0500 0.2000 A 04 0.1500 0.7500 0.0500 0.0500 C 05 0.2500 0.5000 0.1500 0.1000 m 06 0.7000 0.0000 0.0000 0.3000 W 07 0.4000 0.2500 0.1500 0.2000 m 08 0.5000 0.3000 0.1000 0.1000 m 09 0.2000 0.4000 0.1500 0.2500 y 10 0.2000 0.4500 0.0500 0.3000 y 11 0.2500 0.5500 0.1000 0.1000 m 12 0.1000 0.3000 0.2500 0.3500 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Q9SXJ0_TOBAC:M2786_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GRMZM2G015534/M2843_1.02/CISBP XX ID GRMZM2G015534:M2843_1.02:CISBP XX NA GRMZM2G015534 XX DE GRMZM2G015534 XX OS Zea mays XX BF 10718; XX P0 A C G T 01 0.0000 0.4000 0.0000 0.6000 y 02 1.0000 0.0000 0.0000 0.0000 A 03 0.0000 0.0000 0.0000 1.0000 T 04 0.0000 1.0000 0.0000 0.0000 C 05 0.0000 0.0000 0.0000 1.0000 T 06 1.0000 0.0000 0.0000 0.0000 A 07 0.0000 1.0000 0.0000 0.0000 C 08 0.0000 0.0000 1.0000 0.0000 G 09 0.0000 0.0000 0.0000 1.0000 T 10 0.0000 0.0000 1.0000 0.0000 G 11 0.0000 0.0000 1.0000 0.0000 G 12 1.0000 0.0000 0.0000 0.0000 A 13 1.0000 0.0000 0.0000 0.0000 A 14 0.0000 0.0000 0.0000 1.0000 T 15 0.0000 0.0000 1.0000 0.0000 G 16 1.0000 0.0000 0.0000 0.0000 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GRMZM2G015534:M2843_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYBP_MAIZE/M2851_1.02/CISBP XX ID MYBP_MAIZE:M2851_1.02:CISBP XX NA MYBP_MAIZE XX DE MYBP_MAIZE XX OS Zea mays XX BF 757; XX P0 A C G T 01 0.1944 0.4167 0.2222 0.1667 c 02 0.2222 0.1111 0.3611 0.3056 k 03 0.0278 0.0000 0.9444 0.0278 G 04 0.0000 0.0000 1.0000 0.0000 G 05 0.0000 0.0000 0.0000 1.0000 T 06 0.5278 0.0000 0.0000 0.4722 w 07 0.1389 0.0000 0.8611 0.0000 G 08 0.0833 0.0833 0.7778 0.0556 G 09 0.1111 0.1111 0.0833 0.6944 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYBP_MAIZE:M2851_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Q9ZWK1_TOBAC/M2889_1.02/CISBP XX ID Q9ZWK1_TOBAC:M2889_1.02:CISBP XX NA Q9ZWK1_TOBAC XX DE Q9ZWK1_TOBAC XX OS Nicotiana tabacum XX BF 2036; XX P0 A C G T 01 0.8046 0.0690 0.0690 0.0575 A 02 0.0115 0.2414 0.0000 0.7471 T 03 0.0000 0.0115 0.9885 0.0000 G 04 0.3563 0.1379 0.0345 0.4713 w 05 0.9885 0.0000 0.0115 0.0000 A 06 0.0115 0.5632 0.0230 0.4023 y 07 0.0575 0.7011 0.1494 0.0920 C 08 0.0345 0.0920 0.0460 0.8276 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Q9ZWK1_TOBAC:M2889_1.02:CISBP XX RN [1]; RX PUBMED: 16381825 RL Matys V, Kel-Margoulis O.V, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel A.E, Wingender E. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic acids research 34:D108-10 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABF3/MA0930.1/JASPAR XX ID ABF3:MA0930.1:JASPAR XX NA ABF3 XX DE ABF3 XX OS Arabidopsis thaliana XX BF 3859; XX P0 A C G T 01 971 10 10 10 A 02 10 971 10 10 C 03 971 10 10 10 A 04 10 971 10 10 C 05 10 10 971 10 G 06 10 10 10 971 T 07 10 10 971 10 G 08 10 10 10 971 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABF3:MA0930.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 11005831 RL Uno Y, Furihata T, Abe H, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc Natl Acad Sci U S A 97:11632-7 (2000). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABI5/MA0931.1/JASPAR XX ID ABI5:MA0931.1:JASPAR XX NA ABI5 XX DE ABI5 XX OS Arabidopsis thaliana XX BF 3091; XX P0 A C G T 01 181 257 257 306 b 02 87 87 660 167 g 03 608 314 0 78 m 04 0 922 78 0 C 05 999 0 0 0 A 06 0 999 0 0 C 07 0 0 999 0 G 08 0 0 0 999 T 09 152 70 709 70 G 10 164 164 337 336 k XX BS 55013; BS 55014; BS 55015; BS 55016; BS 55017; BS 55018; BS 55019; BS 55020; BS 55021; BS 55022; BS 55023; BS 55024; BS 55025; BS 55026; BS 55027; BS 55028; BS 55029; BS 55030; BS 55031; BS 55032; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABI5:MA0931.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 12376636 RL Kim S. Y., Ma J., Perret P., Li Z., Thomas T. L. Arabidopsis ABI5 subfamily members have distinct DNA-binding and transcriptional activities.. Plant Physiol. 130:688-697 (2002). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC025/MA0935.1/JASPAR XX ID NAC025:MA0935.1:JASPAR XX NA NAC025 XX DE NAC025 XX OS Arabidopsis thaliana XX BF 11519; XX P0 A C G T 01 1 421 1 578 y 02 965 0 35 0 A 03 0 999 0 0 C 04 0 0 999 0 G 05 0 276 69 655 y 06 827 173 0 0 A 07 930 0 0 69 A 08 50 599 50 300 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC025:MA0935.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC080/MA0939.1/JASPAR XX ID NAC080:MA0939.1:JASPAR XX NA NAC080 XX DE NAC080 XX OS Arabidopsis thaliana XX BF 12094; XX P0 A C G T 01 665 1 222 112 a 02 1 691 1 308 Y 03 998 1 1 1 A 04 1 998 1 1 C 05 1 1 998 1 G 06 1 855 1 143 C 07 784 72 1 143 A 08 998 1 1 1 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC080:MA0939.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AP1/MA0940.1/JASPAR XX ID AP1:MA0940.1:JASPAR XX NA AP1 XX DE AP1 XX OS Arabidopsis thaliana XX BF 17348; XX P0 A C G T 01 734 799 32 57 m 02 84 941 39 558 y 03 1323 46 35 218 A 04 1134 19 152 317 A 05 1551 10 15 46 A 06 1277 15 24 306 A 07 1191 23 252 156 A 08 682 21 257 662 w 09 653 12 930 27 r 10 133 60 1354 75 G 11 1146 153 170 153 A 12 1279 122 168 53 A 13 1257 22 162 181 A XX BS 55073; BS 55074; BS 55075; BS 55076; BS 55077; BS 55078; BS 55079; BS 55080; BS 55081; BS 55082; BS 55083; BS 55084; BS 55085; BS 55086; BS 55087; BS 55088; BS 55089; BS 55090; BS 55091; BS 55092; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AP1:MA0940.1:JASPAR XX CC ChIP-seq XX RN [1]; RX PUBMED: 8774892 RL Riechmann J. L., Wang M., Meyerowitz E. M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res. 24:3134-3141 (1996). RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 25361952 RL Heyndrickx KS, Van de Velde J, Wang C, Weigel D, Vandepoele K. A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. Plant Cell 26:3894-910 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ABF2/MA0941.1/JASPAR XX ID ABF2:MA0941.1:JASPAR XX NA ABF2 XX DE ABF2 XX OS Arabidopsis thaliana XX BF 12100; XX P0 A C G T 01 231 308 231 231 c 02 308 231 231 231 a 03 191 268 191 350 y 04 274 120 403 202 r 05 699 177 103 21 A 06 0 840 0 159 C 07 999 0 0 0 A 08 0 917 0 82 C 09 19 19 942 19 G 10 19 19 19 942 T 11 218 59 664 59 g 12 213 130 287 371 k 13 229 229 229 312 t XX BS 55093; BS 55094; BS 55095; BS 55096; BS 55097; BS 55098; BS 55099; BS 55100; BS 55101; BS 55102; BS 55103; BS 55104; BS 55105; BS 55106; BS 55107; BS 55108; BS 55109; BS 55110; BS 55111; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ABF2:MA0941.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 11005831 RL Uno Y, Furihata T, Abe H, Yoshida R, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc Natl Acad Sci U S A 97:11632-7 (2000). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARF1/MA0942.1/JASPAR XX ID ARF1:MA0942.1:JASPAR XX NA ARF1 XX DE ARF1 XX OS Arabidopsis thaliana XX BF 2866; XX P0 A C G T 01 722 2 276 1 R 02 3 993 1 4 C 03 4 993 2 2 C 04 4 2 992 1 G 05 989 3 1 7 A 06 2 993 2 2 C 07 901 4 88 8 A 08 262 220 207 312 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARF1:MA0942.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9188533 RL Ulmasov T., Hagen G., Guilfoyle T. J. ARF1, a transcription factor that binds to auxin response elements. Science 276:1865-1868 (1997). RN [2]; RX PUBMED: 24485461 RL Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARF5/MA0943.1/JASPAR XX ID ARF5:MA0943.1:JASPAR XX NA ARF5 XX DE ARF5 XX OS Arabidopsis thaliana XX BF 3649; XX P0 A C G T 01 303 160 477 59 r 02 9 969 15 8 C 03 97 898 4 2 C 04 12 1 985 2 G 05 952 1 46 1 A 06 2 992 3 3 C 07 773 224 2 2 A 08 491 98 218 193 a XX BS 55112; BS 55113; BS 55114; BS 55115; BS 55116; BS 55117; BS 55118; BS 55119; BS 55120; BS 55121; BS 55122; BS 55123; BS 55124; BS 55125; BS 55126; BS 55127; BS 55128; BS 55129; BS 55130; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARF5:MA0943.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24485461 RL Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 25002510 RL Zhang JY, He SB, Li L, Yang HQ. Auxin inhibits stomatal development through MONOPTEROS repression of a mobile peptide gene STOMAGEN in mesophyll. Proc Natl Acad Sci U S A : (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARF8/MA0944.1/JASPAR XX ID ARF8:MA0944.1:JASPAR XX NA ARF8 XX DE ARF8 XX OS Arabidopsis thaliana XX BF 3650; XX P0 A C G T 01 270 233 204 293 w 02 225 259 106 410 y 03 4 0 90 906 T 04 38 1 900 60 G 05 0 13 0 987 T 06 54 863 2 82 C 07 61 27 798 114 G 08 121 138 651 89 g 09 228 337 217 219 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARF8:MA0944.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24485461 RL Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR1/MA0945.1/JASPAR XX ID ARR1:MA0945.1:JASPAR XX NA ARR1 XX DE ARR1 XX OS Arabidopsis thaliana XX BF 7490; XX P0 A C G T 01 406 168 208 218 a 02 172 292 343 192 s 03 297 466 139 99 m 04 306 83 564 47 r 05 423 22 235 320 w 06 965 0 0 34 A 07 21 1 1 977 T 08 56 897 4 43 C 09 143 156 91 609 t 10 257 190 181 372 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR1:MA0945.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11135105 RL Sakai H, Aoyama T, Oka A. 2000. Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators. Plant J. 24:703-11. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR18/MA0948.1/JASPAR XX ID ARR18:MA0948.1:JASPAR XX NA ARR18 XX DE ARR18 XX OS Arabidopsis thaliana XX BF 12093; XX P0 A C G T 01 324 225 225 225 a 02 202 202 202 394 t 03 274 370 178 178 m 04 329 186 194 290 w 05 834 25 25 115 A 06 0 88 912 0 G 07 999 0 0 0 A 08 0 0 0 999 T 09 728 25 25 222 A 10 48 673 48 231 c 11 159 72 697 72 G 12 341 243 264 151 r 13 225 225 225 326 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR18:MA0948.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR2/MA0949.1/JASPAR XX ID ARR2:MA0949.1:JASPAR XX NA ARR2 XX DE ARR2 XX OS Arabidopsis thaliana XX BF 7491; XX P0 A C G T 01 174 257 394 174 s 02 338 572 45 45 m 03 214 0 786 0 G 04 476 0 214 309 w 05 1000 0 0 0 A 06 0 0 0 1000 T 07 0 1000 0 0 C 08 0 0 0 1000 T 09 162 76 76 687 T 10 205 205 205 386 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR2:MA0949.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-16/MA0951.1/JASPAR XX ID ATHB-16:MA0951.1:JASPAR XX NA ATHB-16 XX DE ATHB-16 XX OS Arabidopsis thaliana XX BF 11174; XX P0 A C G T 01 72 214 1 713 T 02 999 0 0 0 A 03 999 0 0 0 A 04 0 0 0 999 T 05 545 318 137 0 m 06 999 0 0 0 A 07 0 0 0 999 T 08 67 1 67 865 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-16:MA0951.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-6/MA0953.1/JASPAR XX ID ATHB-6:MA0953.1:JASPAR XX NA ATHB-6 XX DE ATHB-6 XX OS Arabidopsis thaliana XX BF 11165; XX P0 A C G T 01 177 252 287 284 b 02 149 524 85 243 c 03 745 89 73 92 A 04 886 71 1 42 A 05 20 6 1 972 T 06 356 310 128 206 m 07 924 5 38 32 A 08 106 66 130 698 T 09 234 111 266 389 k XX BS 55151; BS 55152; BS 55153; BS 55154; BS 55155; BS 55156; BS 55157; BS 55158; BS 55159; BS 55160; BS 55161; BS 55162; BS 55163; BS 55164; BS 55165; BS 55166; BS 55167; BS 55168; BS 55169; BS 55170; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-6:MA0953.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-7/MA0954.1/JASPAR XX ID ATHB-7:MA0954.1:JASPAR XX NA ATHB-7 XX DE ATHB-7 XX OS Arabidopsis thaliana XX BF 12011; XX P0 A C G T 01 152 338 152 358 y 02 27 828 27 118 C 03 1000 0 0 0 A 04 1000 0 0 0 A 05 0 0 0 1000 T 06 0 1000 0 0 C 07 1000 0 0 0 A 08 291 0 0 709 W 09 183 98 190 528 t 10 223 223 330 223 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-7:MA0954.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC POPTR/MA0955.1/JASPAR XX ID POPTR:MA0955.1:JASPAR XX NA POPTR XX DE POPTR XX OS cottonwood; Populus trichocarpa XX BF 11685; BF 17938; XX P0 A C G T 01 201 266 325 209 s 02 9 29 954 7 G 03 8 11 99 882 T 04 951 43 5 0 A 05 153 706 29 112 C 06 41 80 859 19 G 07 188 50 696 67 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=POPTR:MA0955.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BEE2/MA0956.1/JASPAR XX ID BEE2:MA0956.1:JASPAR XX NA BEE2 XX DE BEE2 XX OS Arabidopsis thaliana XX BF 17491; XX P0 A C G T 01 256 253 236 255 h 02 211 229 342 218 g 03 136 722 38 104 C 04 893 0 33 74 A 05 23 820 0 157 C 06 157 0 820 23 G 07 74 33 0 893 T 08 104 38 722 136 G 09 218 342 229 211 c 10 255 236 253 256 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BEE2:MA0956.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 12897250 RL Toledo-Ortiz G., Huq E., Quail P. H. The Arabidopsis basic/helix-loop-helix transcription factor family.. Plant Cell 15:1749-1770 (2003). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH3/MA0957.1/JASPAR XX ID BHLH3:MA0957.1:JASPAR XX NA BHLH3 XX DE BHLH3 XX OS Arabidopsis thaliana XX BF 11972; XX P0 A C G T 01 258 94 603 44 r 02 45 930 14 11 C 03 950 7 20 22 A 04 10 937 12 42 C 05 42 12 937 10 G 06 22 20 7 950 T 07 11 14 930 45 G 08 44 603 94 258 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH3:MA0957.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24465948 RL Fonseca S, Fernández-Calvo P, Fernández GM, Díez-Díaz M, Gimenez-Ibanez S, López-Vidriero I, Godoy M, Fernández-Barbero G, Van Leene J, De Jaeger G, Franco-Zorrilla JM, Solano R. bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses. PLoS One : (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH13/MA0958.1/JASPAR XX ID BHLH13:MA0958.1:JASPAR XX NA BHLH13 XX DE BHLH13 XX OS Arabidopsis thaliana XX BF 10512; XX P0 A C G T 01 295 116 569 20 r 02 53 945 1 1 C 03 992 2 3 4 A 04 1 952 1 46 C 05 15 1 982 1 G 06 4 4 1 991 T 07 1 2 987 10 G 08 38 696 65 201 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH13:MA0958.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24465948 RL Fonseca S, Fernández-Calvo P, Fernández GM, Díez-Díaz M, Gimenez-Ibanez S, López-Vidriero I, Godoy M, Fernández-Barbero G, Van Leene J, De Jaeger G, Franco-Zorrilla JM, Solano R. bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses. PLoS One : (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AIB/MA0959.1/JASPAR XX ID AIB:MA0959.1:JASPAR XX NA AIB XX DE AIB XX OS Arabidopsis thaliana XX BF 12120; XX P0 A C G T 01 76 14 901 8 G 02 59 939 1 2 C 03 966 1 28 5 A 04 0 903 2 94 C 05 94 2 903 0 G 06 5 28 1 966 T 07 2 1 939 59 G 08 8 901 14 76 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AIB:MA0959.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24465948 RL Fonseca S, Fernández-Calvo P, Fernández GM, Díez-Díaz M, Gimenez-Ibanez S, López-Vidriero I, Godoy M, Fernández-Barbero G, Van Leene J, De Jaeger G, Franco-Zorrilla JM, Solano R. bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses. PLoS One : (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH104/MA0960.1/JASPAR XX ID BHLH104:MA0960.1:JASPAR XX NA BHLH104 XX DE BHLH104 XX OS Arabidopsis thaliana XX BF 12062; XX P0 A C G T 01 130 26 822 22 G 02 15 74 866 45 G 03 6 994 0 0 C 04 996 0 4 0 A 05 0 999 0 1 C 06 1 0 999 0 G 07 0 4 0 996 T 08 0 0 994 6 G 09 45 866 74 15 C 10 22 822 26 130 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH104:MA0960.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH112/MA0961.1/JASPAR XX ID BHLH112:MA0961.1:JASPAR XX NA BHLH112 XX DE BHLH112 XX OS Arabidopsis thaliana; Oryza sativa Japonica Group XX BF 12075; XX P0 A C G T 01 221 250 306 222 s 02 0 1000 0 0 C 03 177 823 0 0 C 04 1000 0 0 0 A 05 0 1000 0 0 C 06 0 0 0 1000 T 07 0 0 0 1000 T 08 0 0 1000 0 G 09 218 343 217 223 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH112:MA0961.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH34/MA0962.1/JASPAR XX ID BHLH34:MA0962.1:JASPAR XX NA BHLH34 XX DE BHLH34 XX OS Arabidopsis thaliana XX BF 10516; XX P0 A C G T 01 154 39 653 154 g 02 0 999 0 0 C 03 727 0 242 31 A 04 0 848 0 152 C 05 0 0 999 0 G 06 0 0 0 999 T 07 0 0 999 0 G 08 96 143 476 286 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH34:MA0962.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BHLH78/MA0963.1/JASPAR XX ID BHLH78:MA0963.1:JASPAR XX NA BHLH78 XX DE BHLH78 XX OS Arabidopsis thaliana XX BF 10523; XX P0 A C G T 01 10 10 971 10 G 02 10 971 10 10 C 03 971 10 10 10 A 04 10 971 10 10 C 05 10 10 971 10 G 06 10 10 10 971 T 07 10 10 971 10 G 08 10 971 10 10 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BHLH78:MA0963.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM1/MA0964.1/JASPAR XX ID BIM1:MA0964.1:JASPAR XX NA BIM1 XX DE BIM1 XX OS Arabidopsis thaliana XX BF 17519; XX P0 A C G T 01 219 250 281 250 b 02 126 655 101 118 c 03 582 101 184 132 a 04 59 766 23 152 C 05 140 62 795 3 G 06 1 23 0 976 T 07 3 2 990 6 G 08 375 301 148 176 m 09 147 344 242 268 y 10 257 262 257 225 v XX BS 55191; BS 55192; BS 55193; BS 55194; BS 55195; BS 55196; BS 55197; BS 55198; BS 55199; BS 55200; BS 55201; BS 55202; BS 55203; BS 55204; BS 55205; BS 55206; BS 55207; BS 55208; BS 55209; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM1:MA0964.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15680330 RL Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM2/MA0965.1/JASPAR XX ID BIM2:MA0965.1:JASPAR XX NA BIM2 XX DE BIM2 XX OS Arabidopsis thaliana XX BF 10514; XX P0 A C G T 01 244 261 290 205 s 02 167 143 373 317 k 03 53 897 1 49 C 04 962 0 24 14 A 05 22 885 0 92 C 06 92 0 885 22 G 07 14 24 0 962 T 08 49 1 897 53 G 09 317 373 143 167 m 10 205 290 261 244 s XX BS 55210; BS 55211; BS 55212; BS 55213; BS 55214; BS 55215; BS 55216; BS 55217; BS 55218; BS 55219; BS 55220; BS 55221; BS 55222; BS 55223; BS 55224; BS 55225; BS 55226; BS 55227; BS 55228; BS 55229; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM2:MA0965.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15680330 RL Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BIM3/MA0966.1/JASPAR XX ID BIM3:MA0966.1:JASPAR XX NA BIM3 XX DE BIM3 XX OS Arabidopsis thaliana XX BF 10522; XX P0 A C G T 01 294 203 270 233 r 02 159 165 433 243 g 03 74 821 8 96 C 04 942 0 25 33 A 05 15 918 0 67 C 06 67 0 918 15 G 07 33 25 0 942 T 08 96 8 821 74 G 09 243 433 165 159 c 10 233 270 203 294 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BIM3:MA0966.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15680330 RL Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bZIP68/MA0968.1/JASPAR XX ID bZIP68:MA0968.1:JASPAR XX NA bZIP68 XX DE bZIP68 XX OS Arabidopsis thaliana XX BF 10635; XX P0 A C G T 01 252 336 123 289 h 02 184 332 264 220 s 03 621 131 137 111 a 04 70 651 148 131 c 05 116 163 634 88 g 06 28 58 0 914 T 07 32 0 951 17 G 08 2 73 542 382 k 09 289 476 134 101 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bZIP68:MA0968.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CMTA2/MA0969.1/JASPAR XX ID CMTA2:MA0969.1:JASPAR XX NA CMTA2 XX DE CMTA2 XX OS Arabidopsis thaliana XX BF 10935; XX P0 A C G T 01 313 203 220 264 w 02 327 237 176 260 w 03 393 121 243 243 a 04 220 438 306 36 s 05 26 955 8 11 C 06 18 11 970 1 G 07 31 682 7 280 Y 08 8 7 970 15 G 09 7 11 54 928 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CMTA2:MA0969.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 17689537 RL Finkler A, Ashery-Padan R, Fromm H. CAMTAs: calmodulin-binding transcription activators from plants to human. FEBS Lett 581:3893-8 (2007). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CMTA3/MA0970.1/JASPAR XX ID CMTA3:MA0970.1:JASPAR XX NA CMTA3 XX DE CMTA3 XX OS Arabidopsis thaliana XX BF 7521; XX P0 A C G T 01 233 540 184 43 c 02 14 974 5 8 C 03 32 0 962 6 G 04 68 664 1 267 y 05 37 0 963 0 G 06 1 1 0 998 T 07 231 274 211 285 y 08 290 247 250 213 r 09 241 258 251 251 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CMTA3:MA0970.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 17689537 RL Finkler A, Ashery-Padan R, Fromm H. CAMTAs: calmodulin-binding transcription activators from plants to human. FEBS Lett 581:3893-8 (2007). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DREB1A/MA0971.1/JASPAR XX ID DREB1A:MA0971.1:JASPAR XX NA DREB1A XX DE DREB1A XX OS Arabidopsis thaliana XX BF 7498; XX P0 A C G T 01 590 118 126 166 a 02 139 159 137 565 t 03 2 0 997 1 G 04 10 14 3 973 T 05 5 991 4 1 C 06 0 0 994 6 G 07 48 0 948 3 G 08 16 504 19 461 y 09 341 240 279 140 r 10 322 205 322 152 r XX BS 55230; BS 55231; BS 55232; BS 55233; BS 55234; BS 55235; BS 55236; BS 55237; BS 55238; BS 55239; BS 55240; BS 55241; BS 55242; BS 55243; BS 55244; BS 55245; BS 55246; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DREB1A:MA0971.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 9952441 RL Medina J, Bargues M, Terol J, Pérez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 119:463-70 (1999). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CDF2/MA0973.1/JASPAR XX ID CDF2:MA0973.1:JASPAR XX NA CDF2 XX DE CDF2 XX OS Arabidopsis thaliana XX BF 11004; XX P0 A C G T 01 334 284 235 148 m 02 608 92 150 150 a 03 693 16 41 250 W 04 980 10 4 5 A 05 979 10 2 9 A 06 868 29 81 22 A 07 17 7 969 6 G 08 53 295 154 498 y 09 328 77 395 200 r 10 299 282 155 264 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CDF2:MA0973.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 7995527 RL Iratni R, Baeza L, Andreeva A, Mache R, Lerbs-Mache S. Regulation of rDNA transcription in chloroplasts: promoter exclusion by constitutive repression. Genes Dev 8:2928-38 (1994). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CDF3/MA0974.1/JASPAR XX ID CDF3:MA0974.1:JASPAR XX NA CDF3 XX DE CDF3 XX OS Arabidopsis thaliana XX BF 11002; XX P0 A C G T 01 447 143 220 191 a 02 607 29 65 298 w 03 994 3 1 2 A 04 989 5 0 6 A 05 880 27 83 10 A 06 19 7 969 6 G 07 70 291 160 479 y 08 222 102 495 180 g 09 286 343 169 202 m XX BS 55247; BS 55248; BS 55249; BS 55250; BS 55251; BS 55252; BS 55253; BS 55254; BS 55255; BS 55256; BS 55257; BS 55258; BS 55259; BS 55260; BS 55261; BS 55262; BS 55263; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CDF3:MA0974.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CRF2/MA0975.1/JASPAR XX ID CRF2:MA0975.1:JASPAR XX NA CRF2 XX DE CRF2 XX OS Arabidopsis thaliana XX BF 10424; XX P0 A C G T 01 44 478 348 131 s 02 108 783 81 27 C 03 0 0 999 0 G 04 0 977 23 0 C 05 0 999 0 0 C 06 0 0 999 0 G 07 23 931 0 46 C 08 118 735 59 88 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CRF2:MA0975.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CRF4/MA0976.1/JASPAR XX ID CRF4:MA0976.1:JASPAR XX NA CRF4 XX DE CRF4 XX OS Arabidopsis thaliana XX BF 10425; XX P0 A C G T 01 70 326 535 70 s 02 108 769 62 62 C 03 0 0 1000 0 G 04 0 974 25 0 C 05 0 1000 0 0 C 06 0 13 987 0 G 07 68 756 68 108 C 08 97 790 65 49 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CRF4:MA0976.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF1.8/MA0981.1/JASPAR XX ID DOF1.8:MA0981.1:JASPAR XX NA DOF1.8 XX DE DOF1.8 XX OS Arabidopsis thaliana XX BF 10998; XX P0 A C G T 01 251 259 256 234 v 02 321 197 250 233 a 03 415 100 135 350 w 04 812 72 38 77 A 05 831 64 3 102 A 06 658 233 27 83 a 07 65 23 846 65 G 08 170 241 231 359 t 09 268 189 270 273 d 10 288 209 269 234 r XX BS 55264; BS 55265; BS 55266; BS 55267; BS 55268; BS 55254; BS 55269; BS 55270; BS 55271; BS 55272; BS 55273; BS 55274; BS 55275; BS 55276; BS 55277; BS 55278; BS 55279; BS 55280; BS 55281; BS 55282; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF1.8:MA0981.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF2.4/MA0982.1/JASPAR XX ID DOF2.4:MA0982.1:JASPAR XX NA DOF2.4 XX DE DOF2.4 XX OS Arabidopsis thaliana XX BF 10999; XX P0 A C G T 01 381 171 233 215 a 02 426 90 127 356 w 03 807 71 18 104 A 04 815 66 1 118 A 05 658 252 16 75 m 06 81 73 762 84 G 07 177 242 210 371 t XX BS 55283; BS 55284; BS 55285; BS 55286; BS 55287; BS 55288; BS 55289; BS 55290; BS 55291; BS 55292; BS 55293; BS 55294; BS 55295; BS 55296; BS 55297; BS 55298; BS 55299; BS 55300; BS 55301; BS 55302; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF2.4:MA0982.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF5.6/MA0983.1/JASPAR XX ID DOF5.6:MA0983.1:JASPAR XX NA DOF5.6 XX DE DOF5.6 XX OS Arabidopsis thaliana XX BF 11007; XX P0 A C G T 01 254 257 262 228 v 02 364 170 227 239 a 03 432 84 108 376 w 04 955 35 1 10 A 05 928 40 1 32 A 06 613 308 56 24 m 07 50 28 884 38 G 08 152 247 213 388 t XX BS 55303; BS 55304; BS 55305; BS 55306; BS 55307; BS 55308; BS 55309; BS 55310; BS 55311; BS 55312; BS 55313; BS 55314; BS 55315; BS 55316; BS 55317; BS 55318; BS 55319; BS 55320; BS 55321; BS 55322; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF5.6:MA0983.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DRE1C/MA0985.1/JASPAR XX ID DRE1C:MA0985.1:JASPAR XX NA DRE1C XX DE DRE1C XX OS Arabidopsis thaliana XX BF 7500; XX P0 A C G T 01 990 3 3 3 A 02 3 3 3 990 T 03 3 3 990 3 G 04 3 3 3 990 T 05 3 990 3 3 C 06 3 3 990 3 G 07 3 3 990 3 G 08 5 495 5 495 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DRE1C:MA0985.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_140773/MA0987.1/JASPAR XX ID PHYPADRAFT_140773:MA0987.1:JASPAR XX NA PHYPADRAFT_140773 XX DE PHYPADRAFT_140773 XX OS moss; Physcomitrella patens XX BF 11009; XX P0 A C G T 01 243 266 253 238 s 02 302 215 260 222 r 03 396 111 173 321 w 04 888 43 10 60 A 05 892 46 1 61 A 06 715 205 28 52 A 07 72 22 839 67 G 08 182 258 229 331 y 09 271 193 271 265 d 10 280 218 272 229 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_140773:MA0987.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_143875/MA0988.1/JASPAR XX ID PHYPADRAFT_143875:MA0988.1:JASPAR XX NA PHYPADRAFT_143875 XX DE PHYPADRAFT_143875 XX OS moss; Physcomitrella patens XX BF 10630; XX P0 A C G T 01 250 272 222 256 h 02 208 231 392 169 g 03 106 844 12 38 C 04 923 0 10 66 A 05 22 940 0 39 C 06 39 0 940 22 G 07 66 10 0 923 T 08 38 12 844 106 G 09 169 392 231 208 c 10 256 222 272 250 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_143875:MA0988.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_153324/MA0989.1/JASPAR XX ID PHYPADRAFT_153324:MA0989.1:JASPAR XX NA PHYPADRAFT_153324 XX DE PHYPADRAFT_153324 XX OS moss; Physcomitrella patens XX BF 11010; XX P0 A C G T 01 253 264 261 222 v 02 334 193 255 218 r 03 482 71 118 330 w 04 861 62 13 65 A 05 926 36 0 38 A 06 672 147 52 129 a 07 71 27 898 5 G 08 139 288 195 378 y 09 285 158 297 260 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_153324:MA0989.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EDT1/MA0990.1/JASPAR XX ID EDT1:MA0990.1:JASPAR XX NA EDT1 XX DE EDT1 XX OS Arabidopsis thaliana XX BF 11164; XX P0 A C G T 01 209 392 115 285 y 02 582 256 67 94 m 03 495 27 70 409 w 04 57 11 9 923 T 05 315 55 33 598 w 06 922 28 43 7 A 07 833 39 23 105 A 08 135 26 1 839 T 09 81 25 756 137 G 10 220 504 49 227 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EDT1:MA0990.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF4/MA0992.1/JASPAR XX ID ERF4:MA0992.1:JASPAR XX NA ERF4 XX DE ERF4 XX OS Arabidopsis thaliana XX BF 7507; XX P0 A C G T 01 169 517 225 90 c 02 65 726 115 94 C 03 24 18 952 6 G 04 12 899 83 6 C 05 12 976 12 0 C 06 6 6 988 0 G 07 56 662 131 150 c 08 123 800 39 39 C XX BS 55323; BS 55324; BS 55325; BS 55326; BS 55327; BS 55328; BS 55329; BS 55330; BS 55331; BS 55332; BS 55333; BS 55334; BS 55335; BS 55336; BS 55337; BS 55338; BS 55339; BS 55340; BS 55341; BS 55342; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF4:MA0992.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF7/MA0993.1/JASPAR XX ID ERF7:MA0993.1:JASPAR XX NA ERF7 XX DE ERF7 XX OS Arabidopsis thaliana XX BF 2877; XX P0 A C G T 01 263 442 140 156 m 02 77 14 874 35 G 03 48 868 84 0 C 04 129 770 36 65 C 05 90 25 875 10 G 06 146 456 132 266 y 07 212 593 66 128 c 08 419 174 210 198 a 09 276 208 198 317 w 10 279 209 201 312 w XX BS 55343; BS 55344; BS 55345; BS 55346; BS 55347; BS 55348; BS 55349; BS 55350; BS 55351; BS 55352; BS 55353; BS 55354; BS 55355; BS 55356; BS 55357; BS 55358; BS 55359; BS 55360; BS 55361; BS 55362; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF7:MA0993.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF8/MA0994.1/JASPAR XX ID ERF8:MA0994.1:JASPAR XX NA ERF8 XX DE ERF8 XX OS Arabidopsis thaliana XX BF 10416; XX P0 A C G T 01 202 572 97 129 c 02 38 0 959 3 G 03 9 908 64 19 C 04 114 807 31 48 C 05 75 53 841 31 G 06 154 452 151 243 c 07 197 605 58 139 c 08 449 175 184 192 a 09 273 206 185 336 w 10 290 206 192 311 w XX BS 55363; BS 55364; BS 55365; BS 55366; BS 55367; BS 55368; BS 55369; BS 55370; BS 55371; BS 55372; BS 55373; BS 55374; BS 55375; BS 55376; BS 55377; BS 55378; BS 55379; BS 55380; BS 55381; BS 55382; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF8:MA0994.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF039/MA0995.1/JASPAR XX ID ERF039:MA0995.1:JASPAR XX NA ERF039 XX DE ERF039 XX OS Arabidopsis thaliana XX BF 2592; XX P0 A C G T 01 250 236 274 240 r 02 165 242 120 473 t 03 43 11 912 34 G 04 115 86 140 660 t 05 4 989 2 5 C 06 6 2 980 12 G 07 19 8 965 7 G 08 20 416 39 524 y 09 244 170 395 190 g 10 261 225 316 198 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF039:MA0995.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF043/MA0996.1/JASPAR XX ID ERF043:MA0996.1:JASPAR XX NA ERF043 XX DE ERF043 XX OS Arabidopsis thaliana XX BF 2594; XX P0 A C G T 01 1 77 1 921 T 02 1 1 998 1 G 03 1 1 1 998 T 04 1 998 1 1 C 05 1 1 998 1 G 06 1 1 998 1 G 07 1 250 1 749 T 08 200 101 599 101 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF043:MA0996.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF069/MA0997.1/JASPAR XX ID ERF069:MA0997.1:JASPAR XX NA ERF069 XX DE ERF069 XX OS Arabidopsis thaliana XX BF 2584; XX P0 A C G T 01 193 294 315 197 s 02 197 471 175 157 c 03 18 0 982 0 G 04 61 828 86 24 C 05 98 680 76 146 C 06 179 0 820 0 G 07 138 419 212 230 c 08 224 404 193 180 c 09 351 209 231 209 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF069:MA0997.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF096/MA0998.1/JASPAR XX ID ERF096:MA0998.1:JASPAR XX NA ERF096 XX DE ERF096 XX OS Arabidopsis thaliana XX BF 10427; XX P0 A C G T 01 193 300 280 227 s 02 289 468 167 76 m 03 34 13 939 13 G 04 32 905 36 27 C 05 97 850 21 32 C 06 43 10 928 19 G 07 129 591 131 149 c 08 35 903 24 38 C 09 384 176 240 200 a 10 233 254 223 290 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF096:MA0998.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF098/MA0999.1/JASPAR XX ID ERF098:MA0999.1:JASPAR XX NA ERF098 XX DE ERF098 XX OS Arabidopsis thaliana XX BF 10423; XX P0 A C G T 01 215 317 270 198 s 02 248 356 222 173 c 03 96 63 804 37 G 04 26 746 166 62 C 05 151 769 10 70 C 06 192 39 756 13 G 07 190 448 170 192 c 08 125 677 99 98 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF098:MA0999.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF105/MA1000.1/JASPAR XX ID ERF105:MA1000.1:JASPAR XX NA ERF105 XX DE ERF105 XX OS Arabidopsis thaliana XX BF 10428; XX P0 A C G T 01 1 126 250 623 k 02 1 1 998 1 G 03 1 998 1 1 C 04 1 927 72 1 C 05 1 1 998 1 G 06 1 143 855 1 G 07 1 998 1 1 C 08 101 101 698 101 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF105:MA1000.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF11/MA1001.1/JASPAR XX ID ERF11:MA1001.1:JASPAR XX NA ERF11 XX DE ERF11 XX OS Arabidopsis thaliana XX BF 10415; XX P0 A C G T 01 206 313 316 165 s 02 213 494 123 169 c 03 109 0 887 4 G 04 25 835 55 85 C 05 145 704 51 99 C 06 131 10 828 31 G 07 190 383 154 273 y 08 258 490 77 175 m 09 424 162 181 233 a 10 276 196 204 324 w XX BS 55403; BS 55404; BS 55405; BS 55406; BS 55407; BS 55408; BS 55409; BS 55410; BS 55411; BS 55412; BS 55413; BS 55414; BS 55415; BS 55416; BS 55417; BS 55418; BS 55419; BS 55420; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF11:MA1001.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF112/MA1002.1/JASPAR XX ID ERF112:MA1002.1:JASPAR XX NA ERF112 XX DE ERF112 XX OS Arabidopsis thaliana XX BF 10420; XX P0 A C G T 01 189 240 392 180 g 02 100 436 346 118 s 03 223 605 117 54 c 04 15 1 913 72 G 05 0 997 2 1 C 06 42 951 4 3 C 07 36 28 903 33 G 08 171 518 101 211 c 09 236 661 37 67 c 10 478 133 240 150 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF112:MA1002.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF13/MA1004.1/JASPAR XX ID ERF13:MA1004.1:JASPAR XX NA ERF13 XX DE ERF13 XX OS Arabidopsis thaliana XX BF 2589; XX P0 A C G T 01 217 478 283 22 s 02 0 49 951 0 G 03 16 951 32 0 C 04 0 983 16 0 C 05 0 16 983 0 G 06 97 645 145 113 c 07 0 999 0 0 C 08 461 103 282 154 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF13:MA1004.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF3/MA1005.1/JASPAR XX ID ERF3:MA1005.1:JASPAR XX NA ERF3 XX DE ERF3 XX OS Arabidopsis thaliana XX BF 7506; XX P0 A C G T 01 80 760 80 80 C 02 14 0 985 0 G 03 0 885 114 0 C 04 0 985 14 0 C 05 14 0 985 0 G 06 57 643 186 114 c 07 79 904 0 16 C 08 581 23 279 116 r XX BS 55421; BS 55405; BS 55404; BS 55406; BS 55409; BS 55411; BS 55422; BS 55407; BS 55413; BS 55423; BS 55416; BS 55410; BS 55417; BS 55414; BS 55403; BS 55420; BS 55424; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF3:MA1005.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF6/MA1006.1/JASPAR XX ID ERF6:MA1006.1:JASPAR XX NA ERF6 XX DE ERF6 XX OS Arabidopsis thaliana XX BF 5590; XX P0 A C G T 01 291 352 179 179 m 02 78 221 166 535 t 03 0 0 1000 0 G 04 0 1000 0 0 C 05 0 1000 0 0 C 06 0 0 1000 0 G 07 0 88 912 0 G 08 0 1000 0 0 C 09 159 156 530 155 g 10 172 278 257 294 b XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF6:MA1006.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_173530/MA1007.1/JASPAR XX ID PHYPADRAFT_173530:MA1007.1:JASPAR XX NA PHYPADRAFT_173530 XX DE PHYPADRAFT_173530 XX OS moss; Physcomitrella patens XX BF 10451; XX P0 A C G T 01 72 1 286 642 k 02 0 0 999 0 G 03 50 0 0 949 T 04 0 999 0 0 C 05 0 0 999 0 G 06 0 0 999 0 G 07 0 150 0 849 T 08 84 1 665 250 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_173530:MA1007.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_182268/MA1008.1/JASPAR XX ID PHYPADRAFT_182268:MA1008.1:JASPAR XX NA PHYPADRAFT_182268 XX DE PHYPADRAFT_182268 XX OS moss; Physcomitrella patens XX BF 10452; XX P0 A C G T 01 292 180 180 348 w 02 144 79 288 489 k 03 0 0 1000 0 G 04 0 0 0 1000 T 05 0 1000 0 0 C 06 0 0 1000 0 G 07 0 0 1000 0 G 08 0 76 0 924 T 09 70 70 789 70 G 10 292 246 291 171 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_182268:MA1008.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_64121/MA1010.1/JASPAR XX ID PHYPADRAFT_64121:MA1010.1:JASPAR XX NA PHYPADRAFT_64121 XX DE PHYPADRAFT_64121 XX OS moss; Physcomitrella patens XX BF 10453; XX P0 A C G T 01 264 273 180 283 h 02 41 41 41 877 T 03 20 20 853 107 G 04 107 20 125 748 T 05 20 941 20 20 C 06 0 87 912 0 G 07 87 0 912 0 G 08 0 0 0 1000 T 09 608 70 158 164 a 10 288 209 209 294 w 11 309 230 230 230 a 12 309 230 230 230 a 13 309 230 230 230 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_64121:MA1010.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_72483/MA1011.1/JASPAR XX ID PHYPADRAFT_72483:MA1011.1:JASPAR XX NA PHYPADRAFT_72483 XX DE PHYPADRAFT_72483 XX OS moss; Physcomitrella patens XX BF 10631; XX P0 A C G T 01 264 238 308 190 r 02 210 181 272 337 k 03 69 849 17 64 C 04 806 0 106 87 A 05 55 800 0 146 C 06 146 0 800 55 G 07 87 106 0 806 T 08 64 17 849 69 G 09 337 272 181 210 m 10 190 308 238 264 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_72483:MA1011.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AGL27/MA1012.1/JASPAR XX ID AGL27:MA1012.1:JASPAR XX NA AGL27 XX DE AGL27 XX OS Arabidopsis thaliana XX BF 17503; XX P0 A C G T 01 25 78 25 14 c 02 1 4 0 137 T 03 0 0 0 142 T 04 14 0 1 127 T 05 0 142 0 0 C 06 0 55 0 87 y 07 108 0 1 33 A 08 32 2 0 108 T 09 9 0 0 133 T 10 2 0 0 140 T 11 15 21 2 104 T 12 17 15 42 68 k 13 33 0 109 0 G 14 11 2 92 37 k XX BS 55425; BS 55426; BS 55427; BS 55428; BS 55429; BS 55430; BS 55431; BS 55432; BS 55433; BS 55434; BS 55435; BS 55436; BS 55437; BS 55438; BS 55439; BS 55440; BS 55441; BS 55442; BS 55443; BS 55444; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AGL27:MA1012.1:JASPAR XX CC ChIP-seq XX RN [1]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [2]; RX PUBMED: 24067612 RL Posé D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M. Temperature-dependent regulation of flowering by antagonistic FLM variants. Nature 503:414-7 (2013). RN [3]; RX PUBMED: 25361952 RL Heyndrickx KS, Van de Velde J, Wang C, Weigel D, Vandepoele K. A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. Plant Cell 26:3894-910 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA10/MA1013.1/JASPAR XX ID GATA10:MA1013.1:JASPAR XX NA GATA10 XX DE GATA10 XX OS Arabidopsis thaliana XX BF 11093; XX P0 A C G T 01 100 67 133 699 T 02 841 27 132 0 A 03 0 0 999 0 G 04 999 0 0 0 A 05 0 0 0 999 T 06 0 999 0 0 C 07 0 111 84 805 T 08 111 111 740 37 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA10:MA1013.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA11/MA1014.1/JASPAR XX ID GATA11:MA1014.1:JASPAR XX NA GATA11 XX DE GATA11 XX OS Arabidopsis thaliana XX BF 11094; XX P0 A C G T 01 167 42 167 624 t 02 902 0 97 0 A 03 0 0 999 0 G 04 999 0 0 0 A 05 0 0 0 999 T 06 0 999 0 0 C 07 0 0 0 999 T 08 44 131 695 131 G XX BS 55445; BS 55446; BS 55447; BS 55448; BS 55449; BS 55450; BS 55451; BS 55452; BS 55453; BS 55454; BS 55455; BS 55456; BS 55457; BS 55458; BS 55459; BS 55460; BS 55461; BS 55462; BS 55463; BS 55464; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA11:MA1014.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA15/MA1016.1/JASPAR XX ID GATA15:MA1016.1:JASPAR XX NA GATA15 XX DE GATA15 XX OS Arabidopsis thaliana XX BF 11096; XX P0 A C G T 01 206 281 217 296 y 02 308 200 284 208 r 03 182 288 66 465 y 04 40 38 903 19 G 05 980 0 0 19 A 06 3 1 0 996 T 07 55 663 156 126 c 08 324 201 268 207 r 09 269 239 280 212 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA15:MA1016.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA8/MA1017.1/JASPAR XX ID GATA8:MA1017.1:JASPAR XX NA GATA8 XX DE GATA8 XX OS Arabidopsis thaliana XX BF 11099; XX P0 A C G T 01 207 319 261 214 s 02 476 241 152 131 a 03 59 29 899 13 G 04 991 1 2 6 A 05 2 21 0 977 T 06 27 649 132 192 c 07 60 379 108 453 y 08 384 158 369 89 r 09 314 187 320 179 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA8:MA1017.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA9/MA1018.1/JASPAR XX ID GATA9:MA1018.1:JASPAR XX NA GATA9 XX DE GATA9 XX OS Arabidopsis thaliana XX BF 11101; XX P0 A C G T 01 227 227 227 318 t 02 161 516 161 161 c 03 204 291 51 453 y 04 925 0 74 0 A 05 0 0 1000 0 G 06 1000 0 0 0 A 07 0 0 0 1000 T 08 0 1000 0 0 C 09 23 97 23 858 T 10 294 89 452 165 r 11 296 199 199 305 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA9:MA1018.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP20-like/MA1019.1/JASPAR XX ID TCP20-like:MA1019.1:JASPAR XX NA TCP20-like XX DE TCP20-like XX OS Glycine max XX BF 11764; XX P0 A C G T 01 104 199 480 218 g 02 19 14 908 59 G 03 86 19 861 33 G 04 109 307 440 144 s 05 42 882 27 49 C 06 3 996 1 0 C 07 4 976 0 20 C 08 896 17 76 11 A 09 17 844 50 89 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP20-like:MA1019.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GT-1/MA1020.1/JASPAR XX ID GT-1:MA1020.1:JASPAR XX NA GT-1 XX DE GT-1 XX OS Arabidopsis thaliana XX BF 7513; XX P0 A C G T 01 0 150 649 200 g 02 0 67 0 932 T 03 30 0 0 970 T 04 999 0 0 0 A 05 971 29 0 0 A 06 30 970 0 0 C 07 0 939 0 61 C 08 624 167 125 84 a XX BS 55465; BS 55466; BS 55467; BS 55468; BS 55469; BS 55470; BS 55471; BS 55472; BS 55473; BS 55474; BS 55475; BS 55476; BS 55477; BS 55478; BS 55479; BS 55480; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GT-1:MA1020.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10437822 RL Marechal E., Hiratsuka K., Delgado J., Nairn A., Qin J., Chait B. T., Chua N. H. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40:373-386 (1999). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_48267/MA1021.1/JASPAR XX ID PHYPADRAFT_48267:MA1021.1:JASPAR XX NA PHYPADRAFT_48267 XX DE PHYPADRAFT_48267 XX OS moss; Physcomitrella patens XX BF 10632; XX P0 A C G T 01 154 461 154 231 c 02 1 998 1 1 C 03 998 1 1 1 A 04 1 998 1 1 C 05 53 1 946 1 G 06 1 1 1 998 T 07 1 1 998 1 G 08 143 642 72 143 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_48267:MA1021.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_38837/MA1022.1/JASPAR XX ID PHYPADRAFT_38837:MA1022.1:JASPAR XX NA PHYPADRAFT_38837 XX DE PHYPADRAFT_38837 XX OS moss; Physcomitrella patens XX BF 11013; XX P0 A C G T 01 251 264 257 228 v 02 343 186 254 217 r 03 463 85 129 323 w 04 828 68 24 81 A 05 855 62 1 82 A 06 644 216 54 86 a 07 61 27 860 52 G 08 150 269 207 374 y 09 259 174 307 259 d 10 283 262 227 227 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_38837:MA1022.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PHYPADRAFT_28324/MA1023.1/JASPAR XX ID PHYPADRAFT_28324:MA1023.1:JASPAR XX NA PHYPADRAFT_28324 XX DE PHYPADRAFT_28324 XX OS moss; Physcomitrella patens XX BF 10454; XX P0 A C G T 01 72 72 286 571 k 02 0 0 999 0 G 03 0 0 0 999 T 04 0 999 0 0 C 05 0 0 999 0 G 06 0 0 999 0 G 07 0 217 0 782 T 08 118 1 705 177 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PHYPADRAFT_28324:MA1023.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT1/MA1024.1/JASPAR XX ID HAT1:MA1024.1:JASPAR XX NA HAT1 XX DE HAT1 XX OS Arabidopsis thaliana XX BF 11172; XX P0 A C G T 01 149 374 328 149 s 02 69 506 69 356 y 03 1000 0 0 0 A 04 1000 0 0 0 A 05 0 0 0 1000 T 06 0 1000 0 0 C 07 1000 0 0 0 A 08 98 0 0 902 T 09 101 101 286 512 k 10 349 181 289 181 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT1:MA1024.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8253077 RL Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HBI1/MA1025.1/JASPAR XX ID HBI1:MA1025.1:JASPAR XX NA HBI1 XX DE HBI1 XX OS Arabidopsis thaliana XX BF 10515; XX P0 A C G T 01 229 313 229 229 c 02 229 229 313 229 g 03 132 240 315 313 k 04 24 106 762 108 G 05 0 1000 0 0 C 06 1000 0 0 0 A 07 0 904 0 95 C 08 0 0 1000 0 G 09 21 21 21 936 T 10 21 21 936 21 G 11 202 485 195 118 c 12 226 226 226 322 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HBI1:MA1025.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24550223 RL Fan M, Bai MY, Kim JG, Wang T, Oh E, Chen L, Park CH, Son SH, Kim SK, Mudgett MB, Wang ZY. The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis. Plant Cell 26:828-41 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB1-like/MA1030.1/JASPAR XX ID MYB1-like:MA1030.1:JASPAR XX NA MYB1-like XX DE MYB1-like XX OS Oryza sativa; Oryza sativa Japonica Group XX BF 12049; XX P0 A C G T 01 416 113 60 411 w 02 535 24 369 72 r 03 416 562 7 15 m 04 26 962 1 11 C 05 41 928 27 4 C 06 10 1 0 989 T 07 832 32 83 54 A 08 373 132 389 106 r 09 266 258 226 250 h 10 241 256 220 283 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB1-like:MA1030.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OJ1581/MA1031.1/JASPAR XX ID OJ1581:MA1031.1:JASPAR XX NA OJ1581 XX DE OJ1581 XX OS Oryza sativa; Oryza sativa Japonica Group XX BF 11760; XX P0 A C G T 01 175 131 414 279 k 02 74 146 335 445 k 03 0 0 929 71 G 04 0 0 1000 0 G 05 127 101 661 112 g 06 112 661 101 127 c 07 0 1000 0 0 C 08 71 929 0 0 C 09 445 335 146 74 m 10 279 414 131 175 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OJ1581:MA1031.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DREB1G/MA1032.1/JASPAR XX ID DREB1G:MA1032.1:JASPAR XX NA DREB1G XX DE DREB1G XX OS Oryza sativa; Oryza sativa Japonica Group XX BF 10429; XX P0 A C G T 01 314 229 229 229 a 02 119 226 119 535 t 03 180 0 820 0 G 04 0 999 0 0 C 05 0 999 0 0 C 06 0 0 999 0 G 07 884 0 115 0 A 08 0 999 0 0 C 09 845 22 22 111 A 10 131 219 221 430 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DREB1G:MA1032.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OJ1058/MA1033.1/JASPAR XX ID OJ1058:MA1033.1:JASPAR XX NA OJ1058 XX DE OJ1058 XX OS Oryza sativa; Oryza sativa Japonica Group XX BF 10693; XX P0 A C G T 01 661 332 3 3 m 02 3 990 3 3 C 03 990 3 3 3 A 04 3 990 3 3 C 05 3 3 990 3 G 06 3 3 3 990 T 07 3 3 990 3 G 08 5 5 495 495 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OJ1058:MA1033.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Os05g0497200/MA1034.1/JASPAR XX ID Os05g0497200:MA1034.1:JASPAR XX NA Os05g0497200 XX DE Os05g0497200 XX OS Oryza sativa; Oryza sativa Japonica Group XX BF 10430; XX P0 A C G T 01 3 990 3 3 C 02 3 3 990 3 G 03 3 661 332 3 s 04 3 990 3 3 C 05 3 3 990 3 G 06 3 990 3 3 C 07 3 990 3 3 C 08 495 5 495 5 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Os05g0497200:MA1034.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP4/MA1035.1/JASPAR XX ID TCP4:MA1035.1:JASPAR XX NA TCP4 XX DE TCP4 XX OS Arabidopsis thaliana XX BF 11750; XX P0 A C G T 01 112 1 775 112 G 02 1 1 998 1 G 03 1 1 998 1 G 04 831 167 1 1 A 05 1 998 1 1 C 06 1 998 1 1 C 07 997 1 1 1 A 08 1 996 1 1 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP4:MA1035.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 12000681 RL Kosugi S., Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family.. Plant J. 30:337-348 (2002). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB24/MA1037.1/JASPAR XX ID MYB24:MA1037.1:JASPAR XX NA MYB24 XX DE MYB24 XX OS Arabidopsis thaliana XX BF 11468; XX P0 A C G T 01 293 213 260 235 r 02 369 158 243 231 a 03 287 20 596 97 r 04 25 0 253 722 K 05 50 60 0 889 T 06 542 206 60 192 a 07 53 26 879 42 G 08 51 5 860 84 G 09 39 360 19 582 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB24:MA1037.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB3/MA1038.1/JASPAR XX ID MYB3:MA1038.1:JASPAR XX NA MYB3 XX DE MYB3 XX OS Arabidopsis thaliana XX BF 11449; XX P0 A C G T 01 285 176 279 260 d 02 59 59 823 59 G 03 20 20 771 188 G 04 0 0 0 1000 T 05 929 0 0 71 A 06 0 0 1000 0 G 07 0 0 1000 0 G 08 0 0 0 1000 T 09 650 74 202 74 a 10 273 191 345 191 r 11 311 230 230 230 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB3:MA1038.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB4/MA1039.1/JASPAR XX ID MYB4:MA1039.1:JASPAR XX NA MYB4 XX DE MYB4 XX OS Arabidopsis thaliana XX BF 11461; XX P0 A C G T 01 253 36 674 36 r 02 9 0 766 225 G 03 0 9 0 991 T 04 565 9 35 391 w 05 26 0 974 0 G 06 18 18 777 188 G 07 10 0 0 990 T 08 319 73 536 73 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB4:MA1039.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC083/MA1043.1/JASPAR XX ID NAC083:MA1043.1:JASPAR XX NA NAC083 XX DE NAC083 XX OS Arabidopsis thaliana XX BF 11525; XX P0 A C G T 01 427 124 124 325 w 02 25 327 25 623 y 03 1000 0 0 0 A 04 0 1000 0 0 C 05 0 0 1000 0 G 06 0 598 0 402 y 07 1000 0 0 0 A 08 1000 0 0 0 A 09 126 522 126 226 c 10 225 325 225 225 c XX BS 55488; BS 55489; BS 55490; BS 55491; BS 55492; BS 55493; BS 55494; BS 55495; BS 55496; BS 55497; BS 55498; BS 55499; BS 55500; BS 55501; BS 55502; BS 55503; BS 55504; BS 55505; BS 55506; BS 55507; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC083:MA1043.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC92/MA1044.1/JASPAR XX ID NAC92:MA1044.1:JASPAR XX NA NAC92 XX DE NAC92 XX OS Arabidopsis thaliana XX BF 11526; XX P0 A C G T 01 227 227 227 318 t 02 318 227 227 227 a 03 559 80 282 80 r 04 22 935 22 22 C 05 909 0 0 91 A 06 430 480 0 91 m 07 0 0 1000 0 G 08 224 497 92 186 c 09 247 607 23 123 c 10 932 23 23 23 A 11 274 299 256 170 v 12 314 229 229 229 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC92:MA1044.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC043/MA1045.1/JASPAR XX ID NAC043:MA1045.1:JASPAR XX NA NAC043 XX DE NAC043 XX OS Arabidopsis thaliana XX BF 11521; XX P0 A C G T 01 444 185 185 185 a 02 46 46 46 863 T 03 442 0 83 475 w 04 719 0 280 0 R 05 76 924 0 0 C 06 0 0 1000 0 G 07 0 245 0 755 T 08 1000 0 0 0 A 09 806 65 65 65 A 10 310 205 205 280 w XX BS 55508; BS 55509; BS 55510; BS 55511; BS 55512; BS 55513; BS 55514; BS 55515; BS 55516; BS 55517; BS 55518; BS 55519; BS 55520; BS 55521; BS 55522; BS 55523; BS 55524; BS 55525; BS 55526; BS 55527; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC043:MA1045.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL9/MA1046.1/JASPAR XX ID NTL9:MA1046.1:JASPAR XX NA NTL9 XX DE NTL9 XX OS Arabidopsis thaliana XX BF 4007; XX P0 A C G T 01 10 10 10 971 T 02 5 5 5 985 T 03 985 5 5 5 A 04 985 5 5 5 A 05 5 5 985 5 G 06 5 5 5 985 T 07 985 5 5 5 A 08 985 5 5 5 A 09 10 10 10 971 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL9:MA1046.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA5/MA1047.1/JASPAR XX ID TGA5:MA1047.1:JASPAR XX NA TGA5 XX DE TGA5 XX OS Arabidopsis thaliana XX BF 10645; XX P0 A C G T 01 444 244 289 22 r 02 0 0 0 1000 T 03 0 0 906 94 G 04 984 0 16 0 A 05 0 1000 0 0 C 06 16 0 984 0 G 07 0 98 0 901 T 08 353 294 206 147 m XX BS 55528; BS 55529; BS 55530; BS 55531; BS 55532; BS 55533; BS 55534; BS 55535; BS 55536; BS 55537; BS 55538; BS 55539; BS 55540; BS 55541; BS 55542; BS 55543; BS 55544; BS 55545; BS 55546; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA5:MA1047.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF094/MA1049.1/JASPAR XX ID ERF094:MA1049.1:JASPAR XX NA ERF094 XX DE ERF094 XX OS Arabidopsis thaliana XX BF 4822; XX P0 A C G T 01 346 461 192 0 m 02 0 0 999 0 G 03 0 999 0 0 C 04 122 877 0 0 C 05 25 0 975 0 G 06 0 951 49 0 C 07 0 999 0 0 C 08 241 104 482 173 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF094:MA1049.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC OsI/MA1050.1/JASPAR XX ID OsI:MA1050.1:JASPAR XX NA OsI XX DE OsI XX OS Oryza sativa; Oryza sativa Indica Group XX BF 11761; XX P0 A C G T 01 1 1 946 53 G 02 46 0 953 0 G 03 91 91 726 91 G 04 0 863 46 91 C 05 0 999 0 0 C 06 0 999 0 0 C 07 899 50 50 0 A 08 1 855 72 72 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=OsI:MA1050.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARALYDRAFT_897773/MA1054.1/JASPAR XX ID ARALYDRAFT_897773:MA1054.1:JASPAR XX NA ARALYDRAFT_897773 XX DE ARALYDRAFT_897773 XX OS Arabidopsis lyrata subsp. lyrata XX BF 11762; XX P0 A C G T 01 92 278 167 463 y 02 27 79 491 402 k 03 36 4 877 83 G 04 17 7 957 19 G 05 40 125 826 9 G 06 756 215 7 22 A 07 2 949 47 2 C 08 1 995 2 1 C 09 862 2 132 4 A 10 20 907 6 67 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARALYDRAFT_897773:MA1054.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL11/MA1056.1/JASPAR XX ID SPL11:MA1056.1:JASPAR XX NA SPL11 XX DE SPL11 XX OS Arabidopsis thaliana XX BF 11680; XX P0 A C G T 01 229 229 229 314 t 02 314 229 229 229 a 03 172 318 172 339 y 04 147 624 63 166 c 05 0 0 1000 0 G 06 0 0 0 1000 T 07 1000 0 0 0 A 08 0 1000 0 0 C 09 21 21 936 21 G 10 21 21 773 185 G 11 572 78 78 271 w 12 188 271 188 353 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL11:MA1056.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL12/MA1057.1/JASPAR XX ID SPL12:MA1057.1:JASPAR XX NA SPL12 XX DE SPL12 XX OS Arabidopsis thaliana XX BF 11683; XX P0 A C G T 01 272 182 211 335 w 02 143 49 761 47 G 03 8 38 12 942 T 04 947 46 5 2 A 05 5 994 0 1 C 06 76 78 744 102 G 07 249 53 538 159 g 08 278 262 151 310 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL12:MA1057.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL4/MA1058.1/JASPAR XX ID SPL4:MA1058.1:JASPAR XX NA SPL4 XX DE SPL4 XX OS Arabidopsis thaliana XX BF 7520; XX P0 A C G T 01 233 327 198 242 c 02 208 54 636 102 g 03 44 83 26 847 T 04 934 51 11 3 A 05 44 893 5 57 C 06 197 106 557 140 g 07 264 104 414 218 r 08 252 252 205 290 h 09 269 258 195 277 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL4:MA1058.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL5/MA1059.1/JASPAR XX ID SPL5:MA1059.1:JASPAR XX NA SPL5 XX DE SPL5 XX OS Arabidopsis thaliana XX BF 11682; XX P0 A C G T 01 185 172 290 354 k 02 234 195 229 342 t 03 142 53 739 66 G 04 22 37 15 927 T 05 926 67 6 0 A 06 10 974 0 15 C 07 84 60 778 79 G 08 178 59 575 188 g 09 250 299 155 296 h XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL5:MA1059.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPT/MA1061.1/JASPAR XX ID SPT:MA1061.1:JASPAR XX NA SPT XX DE SPT XX OS Arabidopsis thaliana XX BF 10520; XX P0 A C G T 01 202 427 208 163 c 02 47 568 255 129 s 03 0 961 0 39 C 04 885 0 99 16 A 05 9 910 0 80 C 06 88 0 912 0 G 07 0 12 0 988 T 08 84 115 724 76 G 09 221 301 237 242 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPT:MA1061.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP19/MA1063.1/JASPAR XX ID TCP19:MA1063.1:JASPAR XX NA TCP19 XX DE TCP19 XX OS Arabidopsis thaliana XX BF 11752; XX P0 A C G T 01 148 221 181 450 t 02 137 151 506 206 g 03 32 7 846 115 G 04 112 57 778 53 G 05 190 283 409 118 s 06 109 739 22 130 C 07 13 961 1 25 C 08 0 999 0 1 C 09 841 29 128 2 A 10 0 812 106 81 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP19:MA1063.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP2/MA1064.1/JASPAR XX ID TCP2:MA1064.1:JASPAR XX NA TCP2 XX DE TCP2 XX OS Arabidopsis thaliana XX BF 11751; XX P0 A C G T 01 217 168 429 186 g 02 88 194 154 564 t 03 35 0 844 121 G 04 0 0 981 19 G 05 68 78 521 333 k 06 333 521 78 68 m 07 19 981 0 0 C 08 121 844 0 35 C 09 564 154 194 88 a 10 186 429 168 217 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP2:MA1064.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP20/MA1065.1/JASPAR XX ID TCP20:MA1065.1:JASPAR XX NA TCP20 XX DE TCP20 XX OS Arabidopsis thaliana XX BF 3891; XX P0 A C G T 01 46 30 802 121 G 02 111 23 795 71 G 03 91 356 418 134 s 04 55 878 1 66 C 05 2 997 1 0 C 06 7 956 3 34 C 07 825 61 77 38 A 08 25 825 84 67 C 09 300 338 157 205 m 10 286 227 244 244 a XX BS 55593; BS 55594; BS 55595; BS 55596; BS 55597; BS 55598; BS 55599; BS 55600; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP20:MA1065.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP5/MA1067.1/JASPAR XX ID TCP5:MA1067.1:JASPAR XX NA TCP5 XX DE TCP5 XX OS Arabidopsis thaliana XX BF 11753; XX P0 A C G T 01 2 2 993 2 G 02 2 2 995 2 G 03 2 2 995 2 G 04 995 2 2 2 A 05 2 995 2 2 C 06 2 995 2 2 C 07 995 2 2 2 A 08 2 745 2 250 Y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP5:MA1067.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA6/MA1069.1/JASPAR XX ID TGA6:MA1069.1:JASPAR XX NA TGA6 XX DE TGA6 XX OS Arabidopsis thaliana XX BF 17433; XX P0 A C G T 01 210 210 330 251 k 02 428 211 209 152 a 03 0 0 0 1000 T 04 0 0 1000 0 G 05 1000 0 0 0 A 06 0 1000 0 0 C 07 0 0 1000 0 G 08 0 0 0 1000 T 09 277 599 84 40 m 10 665 98 138 98 a XX BS 54750; BS 55621; BS 54758; BS 54756; BS 54755; BS 54744; BS 55622; BS 54753; BS 54751; BS 54741; BS 55623; BS 54739; BS 55624; BS 54743; BS 54740; BS 54742; BS 54754; BS 54752; BS 55625; BS 54757; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA6:MA1069.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA7/MA1070.1/JASPAR XX ID TGA7:MA1070.1:JASPAR XX NA TGA7 XX DE TGA7 XX OS Arabidopsis thaliana XX BF 10637; XX P0 A C G T 01 188 207 342 263 k 02 355 161 484 0 r 03 10 5 5 980 T 04 77 4 867 52 G 05 923 13 1 63 A 06 5 860 20 115 C 07 38 2 808 152 G 08 50 162 46 742 T 09 261 574 97 68 m 10 599 63 120 218 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA7:MA1070.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF5.3/MA1071.1/JASPAR XX ID DOF5.3:MA1071.1:JASPAR XX NA DOF5.3 XX DE DOF5.3 XX OS Arabidopsis thaliana XX BF 11005; XX P0 A C G T 01 247 247 262 244 g 02 327 213 228 233 a 03 396 128 146 331 w 04 842 61 17 81 A 05 850 79 0 70 A 06 611 329 14 47 m 07 66 52 767 116 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF5.3:MA1071.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TRB2/MA1073.1/JASPAR XX ID TRB2:MA1073.1:JASPAR XX NA TRB2 XX DE TRB2 XX OS Arabidopsis thaliana XX BF 11471; XX P0 A C G T 01 368 126 69 437 w 02 349 0 611 40 r 03 372 628 0 0 m 04 0 1000 0 0 C 05 0 1000 0 0 C 06 0 6 0 994 T 07 980 0 7 13 A 08 454 74 398 74 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TRB2:MA1073.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [3]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC UNE10/MA1074.1/JASPAR XX ID UNE10:MA1074.1:JASPAR XX NA UNE10 XX DE UNE10 XX OS Arabidopsis thaliana XX BF 10517; XX P0 A C G T 01 214 499 72 214 c 02 0 999 0 0 C 03 999 0 0 0 A 04 0 999 0 0 C 05 0 0 999 0 G 06 0 0 0 999 T 07 0 0 999 0 G 08 267 533 67 134 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=UNE10:MA1074.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21335373 RL Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY15/MA1076.1/JASPAR XX ID WRKY15:MA1076.1:JASPAR XX NA WRKY15 XX DE WRKY15 XX OS Arabidopsis thaliana XX BF 11971; XX P0 A C G T 01 309 197 248 246 a 02 368 96 464 71 r 03 4 8 949 39 G 04 9 3 4 984 T 05 30 965 2 3 C 06 807 104 26 63 A 07 746 35 154 65 A 08 253 525 89 133 m 09 189 238 396 178 g 10 214 292 275 219 s XX BS 55626; BS 55627; BS 55628; BS 55629; BS 55630; BS 55631; BS 55632; BS 55633; BS 55634; BS 55635; BS 55636; BS 55637; BS 55638; BS 55639; BS 55640; BS 55641; BS 55642; BS 55643; BS 55644; BS 55645; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY15:MA1076.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY18/MA1077.1/JASPAR XX ID WRKY18:MA1077.1:JASPAR XX NA WRKY18 XX DE WRKY18 XX OS Arabidopsis thaliana XX BF 7524; XX P0 A C G T 01 290 262 204 244 m 02 258 279 152 312 h 03 392 16 585 8 r 04 1 1 988 11 G 05 0 0 2 997 T 06 1 997 0 2 C 07 985 8 2 5 A 08 964 10 11 16 A 09 186 372 289 153 s 10 212 254 398 135 s XX BS 55646; BS 55647; BS 55648; BS 55649; BS 55650; BS 55651; BS 55652; BS 55653; BS 55654; BS 55655; BS 55656; BS 55657; BS 55658; BS 55659; BS 55660; BS 55661; BS 55662; BS 55626; BS 55663; BS 55664; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY18:MA1077.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 24477691 RL Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY2/MA1078.1/JASPAR XX ID WRKY2:MA1078.1:JASPAR XX NA WRKY2 XX DE WRKY2 XX OS Arabidopsis thaliana XX BF 11833; XX P0 A C G T 01 115 393 246 246 c 02 277 11 713 0 R 03 0 0 1000 0 G 04 0 0 0 1000 T 05 0 1000 0 0 C 06 961 19 19 0 A 07 806 0 163 31 A 08 271 528 72 129 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY2:MA1078.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY21/MA1079.1/JASPAR XX ID WRKY21:MA1079.1:JASPAR XX NA WRKY21 XX DE WRKY21 XX OS Arabidopsis thaliana XX BF 11819; XX P0 A C G T 01 281 223 249 247 a 02 321 195 224 260 w 03 403 87 407 103 r 04 51 0 910 39 G 05 91 4 2 904 T 06 0 999 0 1 C 07 869 66 21 44 A 08 780 10 162 47 A 09 208 607 65 120 c 10 159 209 429 203 g XX BS 55665; BS 55666; BS 55667; BS 55654; BS 55668; BS 55669; BS 55670; BS 55671; BS 55672; BS 55673; BS 55674; BS 55675; BS 55676; BS 55677; BS 55678; BS 55679; BS 55680; BS 55681; BS 55645; BS 55682; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY21:MA1079.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY23/MA1080.1/JASPAR XX ID WRKY23:MA1080.1:JASPAR XX NA WRKY23 XX DE WRKY23 XX OS Arabidopsis thaliana XX BF 11822; XX P0 A C G T 01 698 1 300 1 R 02 1 1 998 1 G 03 1 1 1 998 T 04 1 998 1 1 C 05 998 1 1 1 A 06 998 1 1 1 A 07 167 831 1 1 C 08 143 143 712 1 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY23:MA1080.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY25/MA1081.1/JASPAR XX ID WRKY25:MA1081.1:JASPAR XX NA WRKY25 XX DE WRKY25 XX OS Arabidopsis thaliana XX BF 11818; XX P0 A C G T 01 59 500 118 323 y 02 265 0 734 0 R 03 0 0 999 0 G 04 0 0 0 999 T 05 0 999 0 0 C 06 999 0 0 0 A 07 903 0 58 39 A 08 184 631 79 105 c XX BS 55683; BS 55641; BS 55684; BS 55685; BS 55632; BS 55640; BS 55686; BS 55635; BS 55687; BS 55688; BS 55689; BS 55690; BS 55691; BS 55634; BS 55692; BS 55644; BS 55654; BS 55693; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY25:MA1081.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY30/MA1083.1/JASPAR XX ID WRKY30:MA1083.1:JASPAR XX NA WRKY30 XX DE WRKY30 XX OS Arabidopsis thaliana XX BF 11829; XX P0 A C G T 01 395 132 437 37 r 02 1 6 989 3 G 03 1 2 1 996 T 04 23 976 0 0 C 05 903 55 14 27 A 06 861 20 78 42 A 07 62 783 44 110 C 08 130 227 481 162 g 09 205 327 265 203 s 10 214 221 251 313 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY30:MA1083.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY40/MA1085.1/JASPAR XX ID WRKY40:MA1085.1:JASPAR XX NA WRKY40 XX DE WRKY40 XX OS Arabidopsis thaliana XX BF 11814; XX P0 A C G T 01 246 267 204 283 y 02 378 127 439 55 r 03 1 1 912 86 G 04 32 0 0 967 T 05 23 977 0 1 C 06 672 148 49 130 a 07 591 105 123 182 a 08 247 270 270 213 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY40:MA1085.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY43/MA1086.1/JASPAR XX ID WRKY43:MA1086.1:JASPAR XX NA WRKY43 XX DE WRKY43 XX OS Arabidopsis thaliana XX BF 12057; XX P0 A C G T 01 374 213 169 245 a 02 509 92 342 58 r 03 53 18 877 52 G 04 74 14 4 908 T 05 87 892 11 11 C 06 798 62 61 79 A 07 765 32 131 71 A 08 256 460 108 176 m 09 332 196 310 163 r 10 231 311 218 240 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY43:MA1086.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY48/MA1088.1/JASPAR XX ID WRKY48:MA1088.1:JASPAR XX NA WRKY48 XX DE WRKY48 XX OS Arabidopsis thaliana XX BF 11831; XX P0 A C G T 01 262 237 265 235 r 02 263 231 252 255 d 03 326 154 410 111 r 04 21 0 869 110 G 05 21 0 0 978 T 06 63 930 1 6 C 07 662 145 66 127 a 08 538 76 228 159 a 09 269 386 155 190 m 10 234 232 313 221 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY48:MA1088.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY57/MA1089.1/JASPAR XX ID WRKY57:MA1089.1:JASPAR XX NA WRKY57 XX DE WRKY57 XX OS Arabidopsis thaliana XX BF 11813; XX P0 A C G T 01 398 177 202 223 a 02 408 173 161 258 w 03 499 76 312 114 r 04 38 17 870 75 G 05 30 0 0 969 T 06 52 914 7 27 C 07 879 48 23 50 A 08 817 14 113 56 A 09 260 508 87 145 m 10 199 207 386 207 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY57:MA1089.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY60/MA1090.1/JASPAR XX ID WRKY60:MA1090.1:JASPAR XX NA WRKY60 XX DE WRKY60 XX OS Arabidopsis thaliana XX BF 11817; XX P0 A C G T 01 270 278 269 183 v 02 106 409 106 380 y 03 136 22 820 22 G 04 0 0 1000 0 G 05 0 0 0 1000 T 06 0 1000 0 0 C 07 1000 0 0 0 A 08 1000 0 0 0 A 09 258 608 67 67 m 10 145 246 465 145 g 11 228 228 228 316 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY60:MA1090.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY62/MA1091.1/JASPAR XX ID WRKY62:MA1091.1:JASPAR XX NA WRKY62 XX DE WRKY62 XX OS Arabidopsis thaliana XX BF 11827; XX P0 A C G T 01 126 126 1 748 T 02 308 1 691 1 R 03 1 1 998 1 G 04 1 1 1 998 T 05 1 998 1 1 C 06 998 1 1 1 A 07 998 1 1 1 A 08 273 726 1 1 M XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY62:MA1091.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY63/MA1092.1/JASPAR XX ID WRKY63:MA1092.1:JASPAR XX NA WRKY63 XX DE WRKY63 XX OS Arabidopsis thaliana XX BF 11812; XX P0 A C G T 01 200 371 143 286 y 02 157 0 843 0 G 03 0 0 999 0 G 04 0 0 0 999 T 05 0 999 0 0 C 06 999 0 0 0 A 07 981 0 0 19 A 08 128 513 231 128 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY63:MA1092.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY75/MA1093.1/JASPAR XX ID WRKY75:MA1093.1:JASPAR XX NA WRKY75 XX DE WRKY75 XX OS Arabidopsis thaliana XX BF 11828; XX P0 A C G T 01 302 279 140 279 h 02 500 17 483 0 r 03 0 0 1000 0 G 04 0 0 0 1000 T 05 0 1000 0 0 C 06 1000 0 0 0 A 07 1000 0 0 0 A 08 260 620 0 120 m XX BS 55734; BS 55735; BS 55736; BS 55737; BS 55738; BS 55739; BS 55740; BS 55741; BS 55742; BS 55743; BS 55744; BS 55745; BS 55746; BS 55747; BS 55748; BS 55749; BS 55750; BS 55751; BS 55752; BS 55753; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY75:MA1093.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY8/MA1094.1/JASPAR XX ID WRKY8:MA1094.1:JASPAR XX NA WRKY8 XX DE WRKY8 XX OS Arabidopsis thaliana XX BF 11830; XX P0 A C G T 01 299 203 224 274 w 02 376 124 403 97 r 03 20 1 883 96 G 04 11 0 1 988 T 05 43 948 0 9 C 06 804 92 28 76 A 07 722 32 163 83 A 08 254 467 120 160 m 09 216 218 374 193 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY8:MA1094.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARALYDRAFT_495258/MA1095.1/JASPAR XX ID ARALYDRAFT_495258:MA1095.1:JASPAR XX NA ARALYDRAFT_495258 XX DE ARALYDRAFT_495258 XX OS Arabidopsis lyrata subsp. lyrata XX BF 11757; BF 11755; XX P0 A C G T 01 2 2 993 2 G 02 250 2 745 2 R 03 2 498 498 2 s 04 2 993 2 2 C 05 2 993 2 2 C 06 2 993 2 2 C 07 993 2 2 2 A 08 3 990 3 3 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARALYDRAFT_495258:MA1095.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARALYDRAFT_496250/MA1096.1/JASPAR XX ID ARALYDRAFT_496250:MA1096.1:JASPAR XX NA ARALYDRAFT_496250 XX DE ARALYDRAFT_496250 XX OS Arabidopsis lyrata subsp. lyrata XX BF 11758; XX P0 A C G T 01 3 3 990 3 G 02 2 2 994 2 G 03 2 2 994 2 G 04 994 2 2 2 A 05 2 994 2 2 C 06 2 994 2 2 C 07 994 2 2 2 A 08 3 990 3 3 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARALYDRAFT_496250:MA1096.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARALYDRAFT_493022/MA1097.1/JASPAR XX ID ARALYDRAFT_493022:MA1097.1:JASPAR XX NA ARALYDRAFT_493022 XX DE ARALYDRAFT_493022 XX OS Arabidopsis lyrata subsp. lyrata XX BF 11756; XX P0 A C G T 01 3 3 990 3 G 02 3 3 990 3 G 03 3 332 661 3 s 04 332 661 3 3 m 05 3 990 3 3 C 06 3 990 3 3 C 07 990 3 3 3 A 08 5 985 5 5 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARALYDRAFT_493022:MA1097.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [3]; RX PUBMED: 26531826 RL Mathelier A, Fornes O, Arenillas DJ, Chen CY, Denay G, Lee J, Shi W, Shyr C, Tan G, Worsley-Hunt R, Zhang AW, Parcy F, Lenhard B, Sandelin A, Wasserman WW. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2015). RN [4]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AG/AG/Athamap XX ID AG:AG:Athamap XX NA AG XX DE Agamous XX OS Arabidopsis thaliana XX BF 2958; BF 17319; XX P0 A C G T 01 21 20 6 19 h 02 9 3 3 51 T 03 10 0 1 55 T 04 29 8 8 21 w 05 0 66 0 0 C 06 0 65 0 1 C 07 31 3 6 26 w 08 47 2 0 17 W 09 52 0 1 13 A 10 25 0 1 40 w 11 17 15 11 23 w 12 19 8 20 19 d 13 7 0 57 2 G 14 2 0 54 10 G 15 22 17 5 22 h 16 45 4 5 12 A 17 40 6 9 11 a 18 15 10 16 25 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AG:AG:Athamap XX CC sequences selected with recombinant AG from a pool of double-stranded oligonucleotides containing a core of 26 random nucleotides; 5 rounds of selection and amplification; sequences selected with recombinant AG from a pool of double-stranded oligonucleotides containing a core of 66 random nucleotides; 4 rounds of selection and amplification; SELEX XX RN [1]; RX PUBMED: 7901838 RL Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). RN [2]; RX PUBMED: 8597661 RL Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HMG-1/MA0044.1/JASPAR XX ID HMG-1:MA0044.1:JASPAR XX NA HMG-1 XX DE class: Other Alpha-Helix; family: High Mobility Group XX OS Pisum sativum XX BF 4973; XX P0 A C G T 01 0 5 8 0 s 02 0 0 3 10 T 03 0 4 0 9 Y 04 0 2 10 1 G 05 0 1 0 12 T 06 6 1 3 3 a 07 3 5 0 5 y 08 0 1 2 10 T 09 0 8 1 4 y XX BS 47963; BS 47964; BS 47965; BS 47966; BS 47967; BS 47968; BS 47969; BS 47970; BS 47971; BS 47972; BS 47973; BS 47974; BS 47975; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HMG-1:MA0044.1:JASPAR XX CC sequences selected with recombinant HMG1 from a pool of double-stranded oligonucleotides containing a core of 20 random nucleotides; 3 rounds of selection and amplification; SELEX XX RN [1]; RX PUBMED: 9161031 RL Webster C.I, Packman L.C, Pwee K.H, Gray J.C. High mobility group proteins HMG-1 and HMG-I/Y bind to a positive regulatory region of the pea plastocyanin gene promoter. The Plant journal : for cell and molecular biology 11:703-15 (1997). RN [2]; RX PUBMED: 19906716 RL Portales-Casamar E., Thongjuea S., Kwon A. T., Arenillas D., Zhao X., Valen E., Yusuf D., Lenhard B., Wasserman W. W., Sandelin A. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.. Nucleic Acids Res. 38:D105-10 (2010). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PEND/MA0127.1/JASPAR XX ID PEND:MA0127.1:JASPAR XX NA PEND XX DE class: Zipper-Type; family: Leucine Zipper XX OS Pisum sativum XX BF 17440; XX P0 A C G T 01 30 2 8 2 A 02 6 19 7 10 c 03 1 0 2 39 T 04 4 0 4 34 T 05 3 33 2 4 C 06 0 2 2 38 T 07 2 0 1 39 T 08 32 7 2 1 A 09 4 3 0 35 T 10 2 5 14 21 k XX BS 49782; BS 49783; BS 49784; BS 49785; BS 49786; BS 49787; BS 49788; BS 49789; BS 49790; BS 49791; BS 49792; BS 49793; BS 49794; BS 49795; BS 49796; BS 49797; BS 49798; BS 49799; BS 49800; BS 49801; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PEND:MA0127.1:JASPAR XX CC imported from JASPAR; SELEX XX RN [1]; RX PUBMED: 9973626 RL Mertin S., McDowall S. G., Harley V. R. The DNA-binding specificity of SOX9 and other SOX proteins. Nucleic Acids Res. 27:1359-1364 (1999). RN [2]; RX PUBMED: 19906716 RL Portales-Casamar E., Thongjuea S., Kwon A. T., Arenillas D., Zhao X., Valen E., Yusuf D., Lenhard B., Wasserman W. W., Sandelin A. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.. Nucleic Acids Res. 38:D105-10 (2010). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA1A/MA0129.1/JASPAR XX ID TGA1A:MA0129.1:JASPAR XX NA TGA1A XX DE class: Zipper-Type; family: Leucine Zipper XX OS Nicotiana tabacum; Nicotiana sp. XX BF 3155; XX P0 A C G T 01 4 4 0 7 h 02 13 0 1 1 A 03 0 14 0 1 C 04 2 0 13 0 G 05 1 0 0 14 T 06 0 15 0 0 C 07 13 0 1 1 A XX BS 49813; BS 49814; BS 49815; BS 49816; BS 49817; BS 49818; BS 49819; BS 49820; BS 49821; BS 49822; BS 49823; BS 49824; BS 49825; BS 49826; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA1A:MA0129.1:JASPAR XX CC imported from JASPAR; SELEX XX RN [1]; RX PUBMED: 10561063 RL Niu X., Renshaw-Gegg L., Miller L., Guiltinan M. J. Bipartite determinants of DNA-binding specificity of plant basic leucine zipper proteins.. Plant Mol. Biol. 41:1-13 (1999). RN [2]; RX PUBMED: 19906716 RL Portales-Casamar E., Thongjuea S., Kwon A. T., Arenillas D., Zhao X., Valen E., Yusuf D., Lenhard B., Wasserman W. W., Sandelin A. JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.. Nucleic Acids Res. 38:D105-10 (2010). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_1/UniPROBE XX ID LUX:UP00552A_1:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.21 0.17 0.36 0.26 k 02 0.48 0.21 0.08 0.23 a 03 0.42 0.04 0.17 0.37 w 04 0.78 0.04 0.06 0.12 A 05 0.04 0.02 0.92 0.02 G 06 0.96 0.01 0.02 0.01 A 07 0.06 0.01 0 0.92 T 08 0.43 0.04 0.02 0.52 w 09 0.01 0.82 0.02 0.15 C 10 0.03 0.08 0.85 0.04 G 11 0.10 0.39 0.44 0.06 s 12 0.22 0.07 0.15 0.56 t 13 0.21 0.14 0.28 0.37 k 14 0.38 0.16 0.15 0.31 w XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_1:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_2/UniPROBE XX ID LUX:UP00552A_2:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.17 0.18 0.37 0.28 k 02 0.48 0.19 0.07 0.26 w 03 0.43 0.06 0.19 0.32 w 04 0.79 0.03 0.08 0.10 A 05 0.04 0.01 0.92 0.03 G 06 0.96 0.01 0.01 0.01 A 07 0.04 0.01 0.01 0.95 T 08 0.47 0.05 0.01 0.47 w 09 0.02 0.85 0.01 0.12 C 10 0.03 0.06 0.85 0.06 G 11 0.12 0.34 0.48 0.06 s 12 0.23 0.07 0.17 0.54 t 13 0.30 0.14 0.18 0.37 w 14 0.43 0.15 0.14 0.28 w XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_2:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_3/UniPROBE XX ID LUX:UP00552A_3:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.19 0.19 0.35 0.27 k 02 0.33 0.32 0.11 0.25 m 03 0.47 0.06 0.21 0.26 w 04 0.83 0.02 0.06 0.08 A 05 0.02 0.01 0.95 0.01 G 06 0.97 0.01 0.01 0.01 A 07 0.03 0.01 0 0.96 T 08 0.47 0.04 0.01 0.49 w 09 0.01 0.85 0.02 0.12 C 10 0.02 0.07 0.88 0.03 G 11 0.11 0.33 0.51 0.05 s 12 0.29 0.09 0.15 0.47 w 13 0.24 0.14 0.21 0.42 t 14 0.35 0.14 0.14 0.37 w XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_3:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_4/UniPROBE XX ID LUX:UP00552A_4:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.22 0.24 0.04 0.50 t 02 0.17 0.26 0.30 0.26 b 03 0.23 0.30 0.09 0.38 y 04 0.41 0.15 0.10 0.34 w 05 0.86 0.03 0.05 0.06 A 06 0.07 0.01 0.88 0.04 G 07 0.94 0.02 0.01 0.03 A 08 0.06 0.01 0.02 0.91 T 09 0.47 0.13 0.01 0.39 w 10 0.02 0.71 0.02 0.25 Y 11 0.07 0.04 0.43 0.46 k 12 0.16 0.42 0.35 0.07 s 13 0.14 0.27 0.11 0.47 y 14 0.20 0.23 0.31 0.26 k XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_4:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_5/UniPROBE XX ID LUX:UP00552A_5:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.13 0.22 0.36 0.28 k 02 0.25 0.28 0.12 0.35 h 03 0.53 0.16 0.13 0.19 a 04 0.76 0.03 0.04 0.17 A 05 0.01 0.01 0.91 0.07 G 06 0.96 0.02 0 0.01 A 07 0.07 0 0.01 0.92 T 08 0.39 0.14 0.01 0.46 w 09 0.01 0.71 0.01 0.27 Y 10 0.08 0.06 0.63 0.23 g 11 0.14 0.44 0.34 0.08 s 12 0.17 0.22 0.08 0.54 t 13 0.19 0.22 0.30 0.28 k 14 0.44 0.16 0.22 0.18 a XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_5:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LUX/UP00552A_6/UniPROBE XX ID LUX:UP00552A_6:UniPROBE XX NA LUX XX DE LUX XX OS Arabidopsis thaliana XX BF 12724; XX P0 A C G T 01 0.15 0.19 0.37 0.30 k 02 0.26 0.24 0.18 0.33 w 03 0.45 0.21 0.12 0.22 a 04 0.72 0.03 0.03 0.21 A 05 0.02 0.01 0.91 0.06 G 06 0.97 0.01 0.01 0.01 A 07 0.04 0 0.01 0.94 T 08 0.39 0.13 0.01 0.47 w 09 0.01 0.67 0 0.31 y 10 0.08 0.07 0.65 0.20 g 11 0.11 0.43 0.36 0.10 s 12 0.17 0.24 0.08 0.52 t 13 0.24 0.20 0.26 0.31 k 14 0.44 0.20 0.17 0.19 a XX BS 36387; BS 36392; BS 36394; BS 36395; BS 36704; BS 36721; BS 36722; BS 36729; BS 36730; BS 36733; BS 36734; BS 36735; BS 36736; BS 37068; BS 37159; BS 37349; BS 37432; BS 37577; BS 37713; BS 37994; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LUX:UP00552A_6:UniPROBE XX RN [1]; RX PUBMED: 21236673 RL Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21:126-33 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_1/UniPROBE XX ID DDF1:UP00555A_1:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.18 0.19 0.31 0.32 k 02 0.16 0.18 0.38 0.28 k 03 0.13 0.22 0.37 0.27 k 04 0.32 0.20 0.29 0.20 r 05 0.27 0.26 0.33 0.14 v 06 0.20 0.23 0.20 0.38 t 07 0.16 0.26 0.37 0.21 s 08 0.96 0.01 0.02 0.01 A 09 0.01 0.02 0.01 0.96 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.22 0 0.78 0 G 15 0 0.86 0 0.14 C 16 0.33 0.16 0.35 0.15 r 17 0.35 0.23 0.28 0.14 r 18 0.18 0.27 0.32 0.24 s 19 0.19 0.19 0.44 0.18 g 20 0.30 0.19 0.27 0.24 r 21 0.22 0.21 0.23 0.34 t 22 0.25 0.24 0.22 0.29 w XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_1:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_2/UniPROBE XX ID DDF1:UP00555A_2:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.18 0.17 0.39 0.26 k 02 0.16 0.11 0.38 0.36 k 03 0.08 0.38 0.34 0.20 s 04 0.33 0.21 0.22 0.24 a 05 0.32 0.27 0.25 0.16 v 06 0.33 0.14 0.18 0.35 w 07 0.21 0.17 0.38 0.24 g 08 0.95 0.01 0.03 0.01 A 09 0.02 0.02 0.02 0.95 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.21 0 0.79 0 G 15 0 0.85 0 0.14 C 16 0.33 0.19 0.35 0.13 r 17 0.31 0.24 0.32 0.14 r 18 0.15 0.23 0.35 0.28 k 19 0.19 0.16 0.50 0.15 g 20 0.40 0.20 0.19 0.20 a 21 0.16 0.18 0.28 0.37 k 22 0.27 0.23 0.14 0.36 w XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_2:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_3/UniPROBE XX ID DDF1:UP00555A_3:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.17 0.21 0.25 0.37 k 02 0.15 0.28 0.36 0.21 s 03 0.19 0.12 0.36 0.33 k 04 0.29 0.18 0.38 0.15 r 05 0.22 0.25 0.41 0.12 s 06 0.10 0.33 0.21 0.35 y 07 0.12 0.38 0.34 0.17 s 08 0.97 0.01 0.02 0.01 A 09 0.01 0.02 0.01 0.96 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.22 0 0.77 0 G 15 0 0.87 0 0.13 C 16 0.33 0.14 0.35 0.18 r 17 0.39 0.22 0.25 0.14 r 18 0.20 0.31 0.29 0.20 s 19 0.19 0.21 0.38 0.22 g 20 0.22 0.16 0.35 0.27 k 21 0.30 0.23 0.18 0.29 w 22 0.21 0.22 0.34 0.22 g XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_3:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_4/UniPROBE XX ID DDF1:UP00555A_4:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.21 0.22 0.30 0.27 k 02 0.18 0.17 0.40 0.25 k 03 0.18 0.19 0.34 0.29 k 04 0.27 0.23 0.36 0.15 r 05 0.26 0.28 0.32 0.14 v 06 0.18 0.28 0.21 0.33 y 07 0.23 0.27 0.33 0.16 s 08 0.94 0.01 0.04 0.01 A 09 0.02 0.04 0.03 0.92 T 10 0.01 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.29 0 0.71 0 R 15 0 0.80 0 0.19 C 16 0.24 0.22 0.41 0.13 g 17 0.29 0.28 0.26 0.18 v 18 0.22 0.20 0.28 0.30 k 19 0.22 0.16 0.42 0.21 g 20 0.23 0.28 0.27 0.21 s 21 0.19 0.28 0.25 0.28 b 22 0.25 0.26 0.21 0.28 h XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_4:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_5/UniPROBE XX ID DDF1:UP00555A_5:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.25 0.17 0.33 0.25 d 02 0.20 0.12 0.41 0.27 k 03 0.15 0.34 0.24 0.27 y 04 0.29 0.18 0.33 0.20 r 05 0.28 0.32 0.23 0.16 m 06 0.27 0.19 0.18 0.35 w 07 0.27 0.23 0.33 0.16 r 08 0.93 0.01 0.05 0.01 A 09 0.02 0.04 0.03 0.91 T 10 0.01 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.25 0 0.75 0 R 15 0 0.78 0 0.21 C 16 0.25 0.24 0.37 0.14 r 17 0.30 0.27 0.29 0.14 v 18 0.20 0.19 0.27 0.34 k 19 0.20 0.16 0.42 0.22 g 20 0.30 0.26 0.25 0.19 v 21 0.18 0.25 0.25 0.33 t 22 0.19 0.33 0.16 0.31 y XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_5:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF1/UP00555A_6/UniPROBE XX ID DDF1:UP00555A_6:UniPROBE XX NA DDF1 XX DE DDF1 XX OS Arabidopsis lyrata XX BF 8873; XX P0 A C G T 01 0.18 0.28 0.26 0.27 b 02 0.16 0.24 0.38 0.22 g 03 0.20 0.10 0.44 0.27 k 04 0.24 0.28 0.38 0.10 s 05 0.22 0.24 0.42 0.12 g 06 0.11 0.38 0.22 0.28 y 07 0.19 0.32 0.33 0.16 s 08 0.95 0.01 0.04 0.01 A 09 0.01 0.03 0.03 0.93 T 10 0.01 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.33 0 0.67 0 r 15 0 0.82 0.01 0.17 C 16 0.23 0.19 0.46 0.12 g 17 0.28 0.28 0.22 0.21 m 18 0.25 0.21 0.28 0.26 d 19 0.23 0.16 0.41 0.20 g 20 0.18 0.30 0.29 0.23 s 21 0.19 0.32 0.25 0.24 s 22 0.31 0.19 0.25 0.24 r XX BS 36424; BS 36476; BS 36594; BS 36751; BS 36820; BS 37028; BS 37029; BS 37225; BS 37284; BS 37285; BS 37376; BS 18593; BS 37526; BS 37692; BS 37693; BS 37783; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF1:UP00555A_6:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_1/UniPROBE XX ID DDF2:UP00557A_1:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.24 0.20 0.30 0.27 k 02 0.20 0.18 0.36 0.26 k 03 0.20 0.21 0.28 0.31 k 04 0.28 0.22 0.32 0.19 r 05 0.26 0.27 0.33 0.15 v 06 0.19 0.23 0.20 0.38 t 07 0.19 0.28 0.37 0.16 s 08 0.95 0.01 0.04 0 A 09 0.01 0.01 0 0.98 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.33 0 0.67 0 r 15 0 0.82 0 0.18 C 16 0.27 0.21 0.36 0.16 r 17 0.38 0.24 0.23 0.14 a 18 0.21 0.22 0.34 0.22 g 19 0.20 0.19 0.41 0.20 g 20 0.29 0.22 0.27 0.22 r 21 0.24 0.24 0.19 0.33 t 22 0.28 0.26 0.21 0.25 h XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_1:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_2/UniPROBE XX ID DDF2:UP00557A_2:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.24 0.17 0.37 0.22 g 02 0.19 0.11 0.42 0.29 k 03 0.15 0.32 0.27 0.26 b 04 0.26 0.19 0.34 0.21 r 05 0.29 0.31 0.24 0.16 m 06 0.32 0.18 0.18 0.32 w 07 0.27 0.21 0.35 0.16 r 08 0.93 0.01 0.05 0 A 09 0.01 0.01 0.01 0.98 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0 0 C 13 0 0 0.99 0 G 14 0.30 0 0.70 0 R 15 0 0.82 0 0.18 C 16 0.25 0.25 0.32 0.18 v 17 0.33 0.28 0.23 0.15 m 18 0.20 0.20 0.32 0.28 k 19 0.21 0.18 0.39 0.22 g 20 0.39 0.23 0.23 0.15 a 21 0.18 0.21 0.19 0.43 t 22 0.23 0.31 0.15 0.31 y XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_2:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_3/UniPROBE XX ID DDF2:UP00557A_3:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.23 0.22 0.23 0.32 t 02 0.21 0.27 0.30 0.22 s 03 0.25 0.13 0.28 0.34 d 04 0.30 0.24 0.29 0.16 r 05 0.22 0.22 0.43 0.13 g 06 0.10 0.27 0.21 0.42 y 07 0.13 0.34 0.38 0.16 s 08 0.97 0 0.03 0 A 09 0.01 0.01 0 0.98 T 10 0 0 0.99 0 G 11 0 0 0 0.99 T 12 0 0.99 0.01 0 C 13 0 0 0.99 0 G 14 0.36 0 0.64 0 r 15 0 0.81 0 0.18 C 16 0.29 0.18 0.39 0.14 r 17 0.44 0.20 0.23 0.13 a 18 0.21 0.25 0.36 0.18 s 19 0.18 0.21 0.44 0.17 g 20 0.20 0.20 0.30 0.31 k 21 0.32 0.26 0.18 0.24 m 22 0.31 0.21 0.29 0.19 r XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_3:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_4/UniPROBE XX ID DDF2:UP00557A_4:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.23 0.16 0.28 0.32 k 02 0.17 0.18 0.33 0.32 k 03 0.15 0.20 0.28 0.37 k 04 0.23 0.18 0.39 0.20 g 05 0.21 0.30 0.32 0.17 s 06 0.18 0.27 0.19 0.36 y 07 0.16 0.34 0.37 0.13 s 08 0.96 0.01 0.03 0.01 A 09 0.01 0.01 0.01 0.97 T 10 0 0 0.99 0.01 G 11 0 0 0 0.99 T 12 0 0.99 0.01 0 C 13 0 0 0.99 0.01 G 14 0.43 0 0.56 0 r 15 0 0.74 0.01 0.25 Y 16 0.36 0.12 0.39 0.13 r 17 0.45 0.17 0.23 0.15 a 18 0.21 0.24 0.30 0.25 k 19 0.26 0.18 0.38 0.18 r 20 0.27 0.24 0.22 0.26 w 21 0.24 0.23 0.19 0.34 t 22 0.33 0.26 0.21 0.20 m XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_4:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_5/UniPROBE XX ID DDF2:UP00557A_5:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.27 0.13 0.34 0.27 d 02 0.15 0.10 0.31 0.45 k 03 0.14 0.33 0.24 0.30 y 04 0.18 0.18 0.39 0.25 k 05 0.23 0.37 0.22 0.17 c 06 0.28 0.20 0.19 0.33 w 07 0.26 0.23 0.37 0.14 r 08 0.93 0.01 0.06 0.01 A 09 0.01 0.01 0.01 0.96 T 10 0 0 0.98 0.01 G 11 0.01 0 0.01 0.98 T 12 0 0.98 0.01 0.01 C 13 0.01 0 0.98 0.01 G 14 0.43 0 0.56 0 r 15 0 0.70 0.01 0.29 Y 16 0.34 0.16 0.37 0.13 r 17 0.38 0.17 0.25 0.20 r 18 0.19 0.21 0.27 0.34 k 19 0.31 0.15 0.38 0.17 r 20 0.38 0.32 0.13 0.18 m 21 0.15 0.20 0.24 0.41 t 22 0.32 0.27 0.13 0.29 h XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_5:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DDF2/UP00557A_6/UniPROBE XX ID DDF2:UP00557A_6:UniPROBE XX NA DDF2 XX DE DDF2 XX OS Arabidopsis lyrata XX BF 12107; XX P0 A C G T 01 0.20 0.21 0.23 0.36 t 02 0.19 0.28 0.33 0.20 s 03 0.16 0.11 0.30 0.43 k 04 0.29 0.18 0.38 0.15 r 05 0.18 0.23 0.44 0.15 g 06 0.11 0.34 0.17 0.37 y 07 0.09 0.44 0.35 0.12 s 08 0.97 0.01 0.01 0.01 A 09 0.01 0.01 0.01 0.97 T 10 0 0 0.99 0.01 G 11 0 0 0 0.99 T 12 0 0.99 0.01 0 C 13 0 0 0.99 0 G 14 0.43 0 0.57 0 r 15 0 0.77 0.01 0.22 C 16 0.37 0.09 0.42 0.12 r 17 0.51 0.17 0.21 0.11 a 18 0.23 0.26 0.33 0.18 s 19 0.21 0.22 0.38 0.18 g 20 0.17 0.16 0.34 0.32 k 21 0.37 0.24 0.13 0.26 w 22 0.31 0.23 0.32 0.13 r XX BS 36476; BS 36594; BS 36751; BS 37028; BS 37029; BS 37134; BS 37225; BS 37284; BS 37285; BS 37376; BS 37440; BS 37526; BS 37693; BS 37783; BS 37846; BS 37897; BS 37901; BS 37986; BS 38081; BS 38097; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DDF2:UP00557A_6:UniPROBE XX RN [1]; RX PUBMED: 26103993 RL Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana. Plant Physiol 168:1717-34 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC019/UP00570A_1/UniPROBE XX ID ANAC019:UP00570A_1:UniPROBE XX NA ANAC019 XX DE ANAC019 XX OS Arabidopsis thaliana XX BF 12725; XX P0 A C G T 01 0.15 0.06 0.21 0.58 t 02 0.73 0.03 0.14 0.10 A 03 0.01 0.88 0.02 0.10 C 04 0.98 0 0.01 0.01 A 05 0.01 0.98 0.01 0 C 06 0 0.01 0.98 0.01 G 07 0.01 0.33 0.28 0.38 b 08 0.63 0.35 0 0.02 m 09 0.96 0.01 0.01 0.01 A 10 0.08 0.79 0.05 0.08 C 11 0.09 0.41 0.06 0.44 y 12 0.19 0.19 0.27 0.35 k XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36636; BS 36637; BS 36644; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37448; BS 37670; BS 37671; BS 19309; BS 19334; BS 37942; BS 38036; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC019:UP00570A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC019/UP00570A_2/UniPROBE XX ID ANAC019:UP00570A_2:UniPROBE XX NA ANAC019 XX DE ANAC019 XX OS Arabidopsis thaliana XX BF 12725; XX P0 A C G T 01 0.31 0.31 0.19 0.19 m 02 0.62 0.05 0.19 0.14 a 03 0.02 0.77 0.09 0.11 C 04 0.93 0.03 0.02 0.02 A 05 0.04 0.92 0.04 0.01 C 06 0.01 0.01 0.94 0.03 G 07 0.04 0.45 0.33 0.18 s 08 0.65 0.33 0.01 0.02 m 09 0.92 0.02 0.03 0.04 A 10 0.08 0.66 0.14 0.12 c 11 0.07 0.20 0.07 0.66 t 12 0.17 0.08 0.24 0.52 t XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36636; BS 36637; BS 36644; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37448; BS 37670; BS 37671; BS 19309; BS 19334; BS 37942; BS 38036; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC019:UP00570A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC055/UP00571A_1/UniPROBE XX ID ANAC055:UP00571A_1:UniPROBE XX NA ANAC055 XX DE ANAC055 XX OS Arabidopsis thaliana XX BF 12726; XX P0 A C G T 01 0.25 0.29 0.32 0.14 v 02 0.24 0.29 0.16 0.31 y 03 0.57 0.09 0.21 0.12 a 04 0.03 0.85 0.06 0.07 C 05 0.95 0.01 0.02 0.02 A 06 0.02 0.95 0.02 0.01 C 07 0.01 0.01 0.95 0.03 G 08 0.12 0.03 0.63 0.22 g 09 0.42 0.50 0.03 0.05 m 10 0.88 0.01 0.04 0.07 A 11 0.20 0.67 0.05 0.07 c 12 0.12 0.31 0.09 0.48 y 13 0.46 0.05 0.28 0.21 r XX BS 36372; BS 36530; BS 36534; BS 36535; BS 36537; BS 36614; BS 36634; BS 17295; BS 17647; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37669; BS 37670; BS 19334; BS 37942; BS 37990; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC055:UP00571A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC055/UP00571A_2/UniPROBE XX ID ANAC055:UP00571A_2:UniPROBE XX NA ANAC055 XX DE ANAC055 XX OS Arabidopsis thaliana XX BF 12726; XX P0 A C G T 01 0.12 0.41 0.36 0.10 s 02 0.09 0.12 0.32 0.48 k 03 0.47 0.02 0.13 0.38 w 04 0.01 0.71 0.02 0.27 Y 05 0.97 0.01 0.01 0.02 A 06 0.02 0.95 0 0.03 C 07 0.01 0.01 0.97 0.01 G 08 0.06 0.03 0.81 0.10 G 09 0.36 0.61 0 0.02 m 10 0.87 0 0.03 0.10 A 11 0.12 0.67 0.10 0.12 c 12 0.08 0.11 0.08 0.74 T 13 0.19 0.23 0.21 0.36 t XX BS 36372; BS 36530; BS 36534; BS 36535; BS 36537; BS 36614; BS 36634; BS 17295; BS 17647; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37669; BS 37670; BS 19334; BS 37942; BS 37990; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC055:UP00571A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC092/UP00572A_1/UniPROBE XX ID ANAC092:UP00572A_1:UniPROBE XX NA ANAC092 XX DE ANAC092 XX OS Arabidopsis thaliana XX BF 12727; XX P0 A C G T 01 0.44 0.25 0.18 0.13 m 02 0.16 0.29 0.08 0.47 y 03 0.89 0.02 0.04 0.05 A 04 0 0.93 0.01 0.06 C 05 0.99 0 0 0 A 06 0.02 0.97 0 0 C 07 0 0 0.98 0.02 G 08 0.01 0.94 0.01 0.04 C 09 0.89 0.07 0.01 0.03 A 10 0.96 0 0 0.04 A 11 0.07 0.62 0.03 0.28 y 12 0.15 0.63 0.16 0.06 c 13 0.27 0.15 0.26 0.32 d XX BS 36530; BS 36531; BS 36533; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36618; BS 36902; BS 37072; BS 37073; BS 37141; BS 37142; BS 18079; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC092:UP00572A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC092/UP00572A_2/UniPROBE XX ID ANAC092:UP00572A_2:UniPROBE XX NA ANAC092 XX DE ANAC092 XX OS Arabidopsis thaliana XX BF 12727; XX P0 A C G T 01 0.32 0.26 0.14 0.28 h 02 0.23 0.20 0.08 0.48 t 03 0.83 0.01 0.11 0.05 A 04 0 0.90 0.02 0.08 C 05 0.99 0.01 0 0 A 06 0.03 0.96 0 0 C 07 0 0 0.98 0.01 G 08 0.02 0.96 0.01 0.02 C 09 0.91 0.04 0.01 0.04 A 10 0.96 0 0 0.03 A 11 0.07 0.58 0.12 0.24 c 12 0.17 0.51 0.16 0.16 c 13 0.06 0.06 0.52 0.36 k XX BS 36530; BS 36531; BS 36533; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36618; BS 36902; BS 37072; BS 37073; BS 37141; BS 37142; BS 18079; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC092:UP00572A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC092/UP00572A_3/UniPROBE XX ID ANAC092:UP00572A_3:UniPROBE XX NA ANAC092 XX DE ANAC092 XX OS Arabidopsis thaliana XX BF 12727; XX P0 A C G T 01 0.12 0.67 0.14 0.07 c 02 0.43 0.14 0.14 0.29 w 03 0.95 0.01 0.03 0.02 A 04 0 0.95 0 0.04 C 05 0.99 0 0 0 A 06 0.04 0.95 0 0 C 07 0.01 0 0.98 0.01 G 08 0.01 0.98 0 0.01 C 09 0.93 0.04 0.01 0.02 A 10 0.98 0 0 0.02 A 11 0.07 0.78 0.03 0.12 C 12 0.05 0.88 0.03 0.04 C XX BS 36530; BS 36531; BS 36533; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36618; BS 36902; BS 37072; BS 37073; BS 37141; BS 37142; BS 18079; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC092:UP00572A_3:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ANAC092/UP00572A_4/UniPROBE XX ID ANAC092:UP00572A_4:UniPROBE XX NA ANAC092 XX DE ANAC092 XX OS Arabidopsis thaliana XX BF 12727; XX P0 A C G T 01 0.31 0.22 0.21 0.26 w 02 0.22 0.18 0.10 0.49 t 03 0.82 0 0.14 0.03 A 04 0 0.94 0.01 0.05 C 05 0.99 0 0 0 A 06 0.03 0.97 0 0 C 07 0 0 0.98 0.02 G 08 0.01 0.98 0 0.01 C 09 0.92 0.04 0 0.04 A 10 0.97 0 0 0.03 A 11 0.04 0.68 0.07 0.21 C 12 0.13 0.63 0.10 0.14 c 13 0.08 0.06 0.52 0.33 k XX BS 36530; BS 36531; BS 36533; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36618; BS 36902; BS 37072; BS 37073; BS 37141; BS 37142; BS 18079; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ANAC092:UP00572A_4:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATAF1/UP00573A_1/UniPROBE XX ID ATAF1:UP00573A_1:UniPROBE XX NA ATAF1 XX DE ATAF1 XX OS Arabidopsis thaliana XX BF 12728; XX P0 A C G T 01 0.28 0.16 0.53 0.03 r 02 0.61 0.06 0.22 0.12 a 03 0.87 0.01 0.07 0.05 A 04 0.07 0.03 0.87 0.03 G 05 0.74 0.01 0.01 0.24 A 06 0.06 0.04 0.87 0.03 G 07 0.49 0.29 0.05 0.18 m 08 0.01 0.95 0.02 0.01 C 09 0.02 0.01 0.95 0.02 G 10 0.01 0.01 0.02 0.95 T 11 0.77 0.01 0.19 0.02 A 12 0.20 0.09 0.05 0.67 t XX BS 36482; BS 36488; BS 36530; BS 36535; BS 36537; BS 36616; BS 36637; BS 36644; BS 36651; BS 36709; BS 36927; BS 37142; BS 18089; BS 37146; BS 19334; BS 37942; BS 37951; BS 37972; BS 38082; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATAF1:UP00573A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATAF1/UP00573A_2/UniPROBE XX ID ATAF1:UP00573A_2:UniPROBE XX NA ATAF1 XX DE ATAF1 XX OS Arabidopsis thaliana XX BF 12728; XX P0 A C G T 01 0.46 0.09 0.28 0.18 r 02 0.82 0 0.16 0.02 A 03 0.04 0.01 0.94 0 G 04 0.92 0.01 0 0.07 A 05 0.02 0.01 0.95 0.02 G 06 0.59 0.16 0.14 0.12 a 07 0.01 0.99 0 0 C 08 0 0.01 0.99 0.01 G 09 0 0 0.02 0.97 T 10 0.12 0.01 0.87 0 G 11 0.16 0.33 0.02 0.49 y 12 0.23 0.10 0.26 0.41 k XX BS 36482; BS 36488; BS 36530; BS 36535; BS 36537; BS 36616; BS 36637; BS 36644; BS 36651; BS 36709; BS 36927; BS 37142; BS 18089; BS 37146; BS 19334; BS 37942; BS 37951; BS 37972; BS 38082; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATAF1:UP00573A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAP/UP00574A_1/UniPROBE XX ID NAP:UP00574A_1:UniPROBE XX NA NAP XX DE NAP XX OS Arabidopsis thaliana XX BF 12729; XX P0 A C G T 01 0.24 0.10 0.54 0.12 g 02 0.14 0.24 0.13 0.49 t 03 0.12 0.02 0.05 0.81 T 04 0.02 0.03 0.09 0.85 T 05 0.80 0.04 0.15 0.01 A 06 0.01 0.96 0.01 0.02 C 07 0.02 0.01 0.96 0.01 G 08 0.01 0.15 0.04 0.80 T 09 0.85 0.09 0.03 0.02 A 10 0.81 0.05 0.02 0.12 A 11 0.07 0.63 0.04 0.25 y 12 0.22 0.38 0.18 0.21 c 13 0.25 0.17 0.10 0.47 w XX BS 36530; BS 36537; BS 36540; BS 36616; BS 36617; BS 36618; BS 36644; BS 17314; BS 36709; BS 36902; BS 17647; BS 17891; BS 37142; BS 18089; BS 37146; BS 37633; BS 19334; BS 37942; BS 37951; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAP:UP00574A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAP/UP00574A_2/UniPROBE XX ID NAP:UP00574A_2:UniPROBE XX NA NAP XX DE NAP XX OS Arabidopsis thaliana XX BF 12729; XX P0 A C G T 01 0.39 0.31 0.18 0.12 m 02 0.37 0.10 0.08 0.45 w 03 0.60 0.08 0.18 0.14 a 04 0.02 0.63 0.05 0.29 y 05 0.94 0.03 0.02 0.01 A 06 0.01 0.98 0.01 0.01 C 07 0.03 0.01 0.95 0.01 G 08 0.04 0.70 0.08 0.18 C 09 0.95 0.03 0.01 0.01 A 10 0.91 0.01 0.01 0.08 A 11 0.06 0.64 0.09 0.21 c 12 0.07 0.37 0.06 0.50 y 13 0.05 0.08 0.25 0.62 k XX BS 36530; BS 36537; BS 36540; BS 36616; BS 36617; BS 36618; BS 36644; BS 17314; BS 36709; BS 36902; BS 17647; BS 17891; BS 37142; BS 18089; BS 37146; BS 37633; BS 19334; BS 37942; BS 37951; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAP:UP00574A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NST2/UP00575A_1/UniPROBE XX ID NST2:UP00575A_1:UniPROBE XX NA NST2 XX DE NST2 XX OS Arabidopsis thaliana XX BF 12730; XX P0 A C G T 01 0.30 0.23 0.12 0.35 w 02 0.43 0.23 0.13 0.21 a 03 0.08 0.02 0.04 0.86 T 04 0.01 0.05 0.01 0.94 T 05 0.97 0.01 0.01 0.01 A 06 0.04 0.95 0 0.01 C 07 0.01 0.01 0.96 0.02 G 08 0.01 0.80 0.01 0.18 C 09 0.72 0.03 0.02 0.23 A 10 0.98 0 0 0.01 A 11 0.09 0.46 0.05 0.39 y 12 0.13 0.53 0.18 0.16 c XX BS 36398; BS 36514; BS 36530; BS 36616; BS 36618; BS 36878; BS 36902; BS 36915; BS 37072; BS 37073; BS 37142; BS 37863; BS 37871; BS 37877; BS 37951; BS 37965; BS 37993; BS 38004; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NST2:UP00575A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NST2/UP00575A_2/UniPROBE XX ID NST2:UP00575A_2:UniPROBE XX NA NST2 XX DE NST2 XX OS Arabidopsis thaliana XX BF 12730; XX P0 A C G T 01 0.20 0.33 0.29 0.17 s 02 0.26 0.12 0.08 0.53 w 03 0.67 0.09 0.13 0.11 a 04 0.03 0.75 0.02 0.20 C 05 0.87 0.07 0.04 0.03 A 06 0.06 0.87 0.03 0.05 C 07 0.04 0.03 0.90 0.03 G 08 0.09 0.76 0.07 0.08 C 09 0.67 0.18 0.03 0.12 a 10 0.85 0.04 0.01 0.10 A 11 0.15 0.28 0.07 0.50 y 12 0.13 0.52 0.25 0.11 c 13 0.36 0.13 0.21 0.30 w XX BS 36398; BS 36514; BS 36530; BS 36616; BS 36618; BS 36878; BS 36902; BS 36915; BS 37072; BS 37073; BS 37142; BS 37863; BS 37871; BS 37877; BS 37951; BS 37965; BS 37993; BS 38004; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NST2:UP00575A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL6/UP00576A_1/UniPROBE XX ID NTL6:UP00576A_1:UniPROBE XX NA NTL6 XX DE NTL6 XX OS Arabidopsis thaliana XX BF 12731; XX P0 A C G T 01 0.11 0.28 0.37 0.23 s 02 0.24 0.22 0.14 0.40 t 03 0.85 0.02 0.05 0.08 A 04 0 0.90 0.02 0.07 C 05 0.98 0 0.01 0.01 A 06 0.08 0.92 0 0 C 07 0.01 0 0.97 0.01 G 08 0.01 0.82 0.05 0.12 C 09 0.84 0.11 0.01 0.04 A 10 0.94 0.01 0.01 0.04 A 11 0.15 0.60 0.11 0.15 c 12 0.07 0.71 0.06 0.16 C XX BS 36530; BS 36531; BS 36534; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36617; BS 36618; BS 37072; BS 37073; BS 37142; BS 18089; BS 37146; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL6:UP00576A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL6/UP00576A_2/UniPROBE XX ID NTL6:UP00576A_2:UniPROBE XX NA NTL6 XX DE NTL6 XX OS Arabidopsis thaliana XX BF 12731; XX P0 A C G T 01 0.22 0.21 0.40 0.17 g 02 0.10 0.14 0.64 0.12 g 03 0.07 0.13 0.59 0.21 g 04 0.05 0.13 0.08 0.74 T 05 0.87 0.03 0.04 0.06 A 06 0.89 0.03 0.05 0.04 A 07 0.04 0.04 0.82 0.09 G 08 0.07 0.02 0.56 0.35 k 09 0.77 0.03 0.02 0.17 A 10 0.83 0.03 0.03 0.11 A 11 0.25 0.15 0.10 0.49 w 12 0.30 0.27 0.11 0.32 h 13 0.11 0.14 0.19 0.56 t XX BS 36530; BS 36531; BS 36534; BS 36535; BS 36537; BS 36540; BS 36541; BS 36616; BS 36617; BS 36618; BS 37072; BS 37073; BS 37142; BS 18089; BS 37146; BS 37668; BS 37871; BS 37951; BS 38035; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL6:UP00576A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL8/UP00577A_1/UniPROBE XX ID NTL8:UP00577A_1:UniPROBE XX NA NTL8 XX DE NTL8 XX OS Arabidopsis thaliana XX BF 12732; XX P0 A C G T 01 0.17 0.31 0.40 0.12 s 02 0.63 0.02 0.35 0 r 03 0.01 0.17 0.03 0.79 T 04 0 0 0.05 0.94 T 05 0.99 0 0.01 0 A 06 0.99 0.01 0 0 A 07 0.01 0 0.99 0 G 08 0.06 0.11 0.39 0.44 k 09 0.97 0 0 0.02 A 10 0.97 0 0 0.02 A 11 0.20 0.31 0.13 0.37 y 12 0.06 0.62 0.10 0.22 c XX BS 36442; BS 36886; BS 36907; BS 37050; BS 37063; BS 37347; BS 37348; BS 37464; BS 37465; BS 37466; BS 37664; BS 37864; BS 37865; BS 37939; BS 37943; BS 37969; BS 37970; BS 38105; BS 38106; BS 38107; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL8:UP00577A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NTL8/UP00577A_2/UniPROBE XX ID NTL8:UP00577A_2:UniPROBE XX NA NTL8 XX DE NTL8 XX OS Arabidopsis thaliana XX BF 12732; XX P0 A C G T 01 0.50 0.15 0.29 0.06 r 02 0.16 0.30 0.21 0.33 y 03 0.08 0.17 0.62 0.12 g 04 0.65 0.08 0.23 0.04 a 05 0.53 0.02 0.43 0.02 r 06 0.07 0.02 0.89 0.02 G 07 0.09 0.04 0.82 0.05 G 08 0.79 0.02 0.03 0.15 A 09 0.91 0.02 0.05 0.02 A 10 0.80 0.09 0.08 0.03 A 11 0.06 0.60 0.18 0.16 c 12 0.10 0.46 0.18 0.26 y 13 0.06 0.38 0.13 0.43 y XX BS 36442; BS 36886; BS 36907; BS 37050; BS 37063; BS 37347; BS 37348; BS 37464; BS 37465; BS 37466; BS 37664; BS 37864; BS 37865; BS 37939; BS 37943; BS 37969; BS 37970; BS 38105; BS 38106; BS 38107; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NTL8:UP00577A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SND1/UP00578A_1/UniPROBE XX ID SND1:UP00578A_1:UniPROBE XX NA SND1 XX DE SND1 XX OS Arabidopsis thaliana XX BF 12733; XX P0 A C G T 01 0.23 0.14 0.31 0.31 k 02 0.53 0.10 0.18 0.18 a 03 0.01 0.04 0.01 0.95 T 04 0 0.02 0 0.98 T 05 0.99 0 0 0 A 06 0.03 0.97 0 0 C 07 0 0 0.98 0.02 G 08 0 0.96 0 0.04 C 09 0.81 0.02 0 0.16 A 10 0.99 0 0 0.01 A 11 0.09 0.51 0.06 0.34 y 12 0.11 0.78 0.07 0.04 C XX BS 36397; BS 36530; BS 36616; BS 36618; BS 36915; BS 37072; BS 37142; BS 37470; BS 37471; BS 37472; BS 37552; BS 37863; BS 37877; BS 37951; BS 37965; BS 38004; BS 165; BS 38089; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SND1:UP00578A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SND1/UP00578A_2/UniPROBE XX ID SND1:UP00578A_2:UniPROBE XX NA SND1 XX DE SND1 XX OS Arabidopsis thaliana XX BF 12733; XX P0 A C G T 01 0.14 0.05 0.62 0.18 g 02 0.10 0.02 0.79 0.09 G 03 0.03 0 0 0.96 T 04 0.22 0.01 0.05 0.73 T 05 0.11 0 0.88 0.01 G 06 0.03 0.97 0 0 C 07 0 0 0.95 0.05 G 08 0 0 0 0.99 T 09 0.97 0 0.03 0 A 10 0.85 0.04 0.10 0.01 A 11 0.11 0.31 0.13 0.46 y 12 0.17 0.29 0.08 0.46 y XX BS 36397; BS 36530; BS 36616; BS 36618; BS 36915; BS 37072; BS 37142; BS 37470; BS 37471; BS 37472; BS 37552; BS 37863; BS 37877; BS 37951; BS 37965; BS 38004; BS 165; BS 38089; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SND1:UP00578A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VND3/UP00579A_1/UniPROBE XX ID VND3:UP00579A_1:UniPROBE XX NA VND3 XX DE VND3 XX OS Arabidopsis thaliana XX BF 12734; XX P0 A C G T 01 0.38 0.19 0.18 0.25 w 02 0.28 0.09 0.42 0.20 r 03 0.01 0.90 0 0.09 C 04 0.98 0.01 0 0.01 A 05 0.01 0.98 0 0 C 06 0.01 0 0.98 0.01 G 07 0.06 0.01 0.86 0.07 G 08 0.39 0.60 0 0 m 09 0.93 0 0.01 0.06 A 10 0.08 0.80 0.03 0.10 C 11 0.16 0.25 0.12 0.47 y 12 0.20 0.22 0.23 0.35 t XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36617; BS 17295; BS 36637; BS 36644; BS 17647; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37669; BS 37670; BS 19334; BS 37942; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VND3:UP00579A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VND3/UP00579A_2/UniPROBE XX ID VND3:UP00579A_2:UniPROBE XX NA VND3 XX DE VND3 XX OS Arabidopsis thaliana XX BF 12734; XX P0 A C G T 01 0.24 0.22 0.44 0.10 g 02 0.12 0.10 0.24 0.54 t 03 0.88 0.03 0.05 0.03 A 04 0.01 0.84 0.04 0.10 C 05 0.95 0 0.03 0.02 A 06 0.04 0.94 0.01 0.02 C 07 0.01 0.01 0.97 0.01 G 08 0.07 0.40 0.36 0.18 s 09 0.91 0.07 0.01 0.02 A 10 0.95 0.01 0.01 0.03 A 11 0.07 0.80 0.09 0.04 C 12 0.06 0.32 0.06 0.57 y XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36617; BS 17295; BS 36637; BS 36644; BS 17647; BS 17922; BS 37142; BS 37144; BS 18089; BS 37146; BS 37669; BS 37670; BS 19334; BS 37942; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VND3:UP00579A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VND7/UP00580A_1/UniPROBE XX ID VND7:UP00580A_1:UniPROBE XX NA VND7 XX DE VND7 XX OS Arabidopsis thaliana XX BF 12735; XX P0 A C G T 01 0.31 0.06 0.20 0.43 w 02 0.58 0.04 0.24 0.14 a 03 0.02 0.78 0.04 0.16 C 04 0.93 0.02 0.02 0.03 A 05 0.03 0.94 0.02 0.02 C 06 0.01 0.02 0.93 0.04 G 07 0.01 0.43 0.21 0.34 y 08 0.55 0.41 0.01 0.03 m 09 0.90 0.03 0.03 0.04 A 10 0.14 0.70 0.09 0.07 C 11 0.12 0.43 0.11 0.34 y 12 0.18 0.31 0.25 0.26 b XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36617; BS 36637; BS 36644; BS 37142; BS 37144; BS 18089; BS 37146; BS 37670; BS 19309; BS 19334; BS 37942; BS 37951; BS 38082; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VND7:UP00580A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VND7/UP00580A_2/UniPROBE XX ID VND7:UP00580A_2:UniPROBE XX NA VND7 XX DE VND7 XX OS Arabidopsis thaliana XX BF 12735; XX P0 A C G T 01 0.35 0.14 0.42 0.09 r 02 0.16 0.08 0.39 0.38 k 03 0.78 0.05 0.10 0.07 A 04 0.02 0.78 0.08 0.12 C 05 0.95 0.01 0.01 0.03 A 06 0.03 0.95 0.01 0.01 C 07 0.01 0.02 0.96 0.01 G 08 0.03 0.37 0.41 0.19 s 09 0.77 0.21 0.01 0.02 A 10 0.92 0.01 0.01 0.05 A 11 0.07 0.75 0.09 0.10 C 12 0.02 0.34 0.05 0.58 y XX BS 36530; BS 36534; BS 36535; BS 36537; BS 36540; BS 36617; BS 36637; BS 36644; BS 37142; BS 37144; BS 18089; BS 37146; BS 37670; BS 19309; BS 19334; BS 37942; BS 37951; BS 38082; BS 19606; BS 19607; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VND7:UP00580A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VOZ2/UP00581A_1/UniPROBE XX ID VOZ2:UP00581A_1:UniPROBE XX NA VOZ2 XX DE VOZ2 XX OS Arabidopsis thaliana XX BF 12736; XX P0 A C G T 01 0.28 0.16 0.25 0.31 d 02 0.27 0.32 0.25 0.15 v 03 0.06 0.03 0.84 0.07 G 04 0.05 0.02 0.86 0.06 G 05 0.01 0.03 0.01 0.95 T 06 0.56 0.03 0.05 0.36 w 07 0.01 0.01 0.98 0.01 G 08 0 0.98 0.02 0 C 09 0.01 0.01 0.98 0.01 G 10 0.01 0.01 0.01 0.98 T 11 0.77 0.07 0.14 0.02 A 12 0.47 0.23 0.07 0.24 a XX BS 36373; BS 36377; BS 36616; BS 36617; BS 36618; BS 36630; BS 36631; BS 36632; BS 36915; BS 37142; BS 18283; BS 19053; BS 37871; BS 37872; BS 37877; BS 37900; BS 37951; BS 38004; BS 38005; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VOZ2:UP00581A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC VOZ2/UP00581A_2/UniPROBE XX ID VOZ2:UP00581A_2:UniPROBE XX NA VOZ2 XX DE VOZ2 XX OS Arabidopsis thaliana XX BF 12736; XX P0 A C G T 01 0.29 0.31 0.11 0.29 h 02 0.30 0.17 0.27 0.27 d 03 0.75 0.01 0.24 0 A 04 0 0 0.99 0.01 G 05 0 0 0 0.99 T 06 0.01 0.99 0 0 C 07 0.98 0.01 0 0.01 A 08 0.98 0 0.02 0 A 09 0.01 0.98 0.01 0.01 C 10 0.03 0.01 0.95 0.02 G 11 0.21 0.39 0.14 0.26 y 12 0.29 0.27 0.12 0.33 h 13 0.27 0.23 0.37 0.13 r XX BS 36373; BS 36377; BS 36616; BS 36617; BS 36618; BS 36630; BS 36631; BS 36632; BS 36915; BS 37142; BS 18283; BS 19053; BS 37871; BS 37872; BS 37877; BS 37900; BS 37951; BS 38004; BS 38005; BS 19606; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=VOZ2:UP00581A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY1/UP00582A_1/UniPROBE XX ID WRKY1:UP00582A_1:UniPROBE XX NA WRKY1 XX DE WRKY1 XX OS Arabidopsis thaliana XX BF 12737; XX P0 A C G T 01 0.17 0.30 0.19 0.35 y 02 0.36 0.12 0.33 0.19 r 03 0.18 0.28 0.40 0.15 s 04 0.03 0.86 0.04 0.08 C 05 0.03 0.01 0.92 0.04 G 06 0 0.03 0 0.97 T 07 0 0 0.01 0.99 T 08 0 0 0.99 0.01 G 09 0.99 0 0 0 A 10 0.02 0.98 0 0 C 11 0 0.64 0 0.35 y 12 0.33 0.15 0.22 0.30 w 13 0.29 0.19 0.34 0.19 r XX BS 36324; BS 36423; BS 36643; BS 36818; BS 36834; BS 36835; BS 37308; BS 37415; BS 37416; BS 37459; BS 37719; BS 19188; BS 37841; BS 37842; BS 37843; BS 37946; BS 37947; BS 38054; BS 38092; BS 38112; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY1:UP00582A_1:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY1/UP00582A_2/UniPROBE XX ID WRKY1:UP00582A_2:UniPROBE XX NA WRKY1 XX DE WRKY1 XX OS Arabidopsis thaliana XX BF 12737; XX P0 A C G T 01 0.19 0.28 0.17 0.36 y 02 0.11 0.62 0.15 0.12 c 03 0.08 0.57 0.14 0.20 c 04 0.03 0.01 0.92 0.04 G 05 0 0.03 0 0.96 T 06 0.01 0 0.01 0.99 T 07 0 0 0.99 0.01 G 08 0.99 0 0 0 A 09 0.02 0.98 0 0 C 10 0 0.81 0 0.19 C 11 0.15 0.35 0.33 0.18 s 12 0.26 0.20 0.38 0.16 r 13 0.28 0.31 0.17 0.24 m XX BS 36324; BS 36423; BS 36643; BS 36818; BS 36834; BS 36835; BS 37308; BS 37415; BS 37416; BS 37459; BS 37719; BS 19188; BS 37841; BS 37842; BS 37843; BS 37946; BS 37947; BS 38054; BS 38092; BS 38112; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY1:UP00582A_2:UniPROBE XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB.Ph3/MYB.PH3/1)(Athamap XX ID MYB.Ph3:MYB.PH3:1)(Athamap XX NA MYB.Ph3 XX DE Myb-like protein of Petunia hybrida XX OS Petunia; Petunia x hybrida XX BF 741; XX P0 A C G T 01 22 3 4 11 w 02 21 1 7 12 w 03 27 1 7 6 a 04 40 0 2 3 A 05 33 0 8 4 A 06 33 0 8 5 A 07 0 46 0 0 C 08 3 15 26 2 s 09 0 0 46 0 G 10 0 0 0 46 T 11 0 0 0 46 T 12 46 0 0 0 A 13 1 13 2 7 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB.Ph3:MYB.PH3:1)(Athamap XX CC sequences selected with recombinant MYB.Ph3 from a pool of double-stranded oligonucleotides containing a core of 18 random nucleotides; 5 rounds of selection and amplification XX RN [1]; RX PUBMED: 7737128 RL Solano R., Nieto C., Avila J., Canas L., Diaz I., Paz-Ares J. Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida. EMBO J. 14:1773-1784 (1995). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB.Ph3/MYB.PH3/2)(Athamap XX ID MYB.Ph3:MYB.PH3:2)(Athamap XX NA MYB.Ph3 XX DE Myb-like protein of Petunia hybrida XX OS Petunia; Petunia x hybrida XX BF 741; XX P0 A C G T 01 12 1 6 6 a 02 12 2 7 4 r 03 11 2 8 4 r 04 25 0 0 1 A 05 0 0 27 0 G 06 0 0 3 24 T 07 0 0 0 27 T 08 23 0 0 4 A 09 0 0 27 0 G 10 0 0 0 27 T 11 0 0 0 27 T 12 23 0 4 0 A 13 1 5 4 1 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB.Ph3:MYB.PH3:2)(Athamap XX CC sequences selected with recombinant MYB.Ph3 from a pool of double-stranded oligonucleotides containing a core of 18 random nucleotides; 5 rounds of selection and amplification XX RN [1]; RX PUBMED: 7737128 RL Solano R., Nieto C., Avila J., Canas L., Diaz I., Paz-Ares J. Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida. EMBO J. 14:1773-1784 (1995). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC P/P/Athamap XX ID P:P:Athamap XX NA P XX DE maize activator P of flavonoid biosynthetic genes XX OS Zea mays; Zea mays subsp. mays XX BF 756; XX P0 A C G T 01 25 3 4 4 A 02 2 28 3 3 C 03 0 31 0 5 C 04 17 0 0 19 w 05 36 0 0 0 A 06 0 36 0 0 C 07 1 34 0 1 C 08 11 13 4 8 m 09 6 8 15 7 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=P:P:Athamap XX CC sequences selected with recombinant P from a pool of double-stranded oligonucleotides containing a core of 26 random nucleotides; 5 rounds of selection and amplification XX RN [1]; RL TRANSFAC_Team. Revisions of TRANSFAC MATRIX entries. TRANSFAC Reports 1:0001 (1998). RN [2]; RX PUBMED: 8313474 RL Grotewold E., Drummond B. J., Bowen B., Peterson T. The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset. Cell 76:543-553 (1994). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AGL3/MA0001.1/JASPAR XX ID AGL3:MA0001.1:JASPAR XX NA AGL3 XX DE AGL3 XX OS Arabidopsis thaliana XX BF 3866; XX P0 A C G T 01 0 94 1 2 C 02 3 75 0 19 C 03 79 4 3 11 A 04 40 3 4 50 w 05 66 1 1 29 W 06 48 2 0 47 w 07 65 5 5 22 a 08 11 2 3 81 T 09 65 3 28 1 r 10 0 3 88 6 G XX BS 47183; BS 47184; BS 47185; BS 47186; BS 47187; BS 47188; BS 47189; BS 47190; BS 47191; BS 47192; BS 47193; BS 47194; BS 47195; BS 47196; BS 47197; BS 47198; BS 47199; BS 47200; BS 47201; BS 47202; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AGL3:MA0001.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 7632923 RL Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein. Plant Mol. Biol. 28:549-567 (1995). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AG/MA0005.1/JASPAR XX ID AG:MA0005.1:JASPAR XX NA AG XX DE AG XX OS Arabidopsis thaliana XX BF 17319; XX P0 A C G T 01 0 87 2 1 C 02 2 86 0 2 C 03 38 9 7 36 w 04 61 5 2 22 a 05 73 1 1 15 A 06 31 3 4 52 w 07 23 16 17 34 w 08 20 13 26 31 k 09 22 0 64 4 G 10 1 0 82 7 G 11 27 25 9 29 h XX BS 47263; BS 47264; BS 47265; BS 47266; BS 47267; BS 47268; BS 47269; BS 47270; BS 47271; BS 47272; BS 47273; BS 47274; BS 47275; BS 47276; BS 47277; BS 47278; BS 47279; BS 47280; BS 47281; BS 47282; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AG:MA0005.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 7901838 RL Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT5/MA0008.1/JASPAR XX ID HAT5:MA0008.1:JASPAR XX NA HAT5 XX DE HAT5 XX OS Arabidopsis thaliana XX BF 3981; XX P0 A C G T 01 3 13 4 5 c 02 21 1 0 3 A 03 25 0 0 0 A 04 0 0 0 25 T 05 0 5 0 20 T 06 24 0 1 0 A 07 1 0 0 24 T 08 0 0 2 23 T XX BS 47342; BS 47343; BS 47344; BS 47345; BS 47346; BS 47347; BS 47348; BS 47349; BS 47350; BS 47351; BS 47352; BS 47353; BS 47354; BS 47355; BS 47356; BS 47357; BS 47358; BS 47359; BS 47360; BS 47361; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT5:MA0008.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 8253077 RL Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HAT5/MA0008.2/JASPAR XX ID HAT5:MA0008.2:JASPAR XX NA HAT5 XX DE HAT5 XX OS Arabidopsis thaliana XX BF 3981; XX P0 A C G T 01 1 5 3 10 y 02 4 5 3 10 t 03 3 13 4 3 c 04 22 1 0 1 A 05 25 0 0 0 A 06 0 0 0 25 T 07 0 5 0 20 T 08 25 0 0 0 A 09 0 0 0 25 T 10 0 0 0 25 T 11 3 1 12 0 G 12 2 8 4 1 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HAT5:MA0008.2:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 8253077 RL Sessa G., Morelli G., Ruberti I. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO J. 12:3507-3517 (1993). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Dof2/MA0020.1/JASPAR XX ID Dof2:MA0020.1:JASPAR XX NA Dof2 XX DE Dof2 XX OS Zea mays XX BF 4177; XX P0 A C G T 01 21 0 0 0 A 02 21 0 0 0 A 03 21 0 0 0 A 04 0 0 21 0 G 05 3 14 2 2 c 06 7 6 3 5 m XX BS 47561; BS 47562; BS 47563; BS 47564; BS 47565; BS 47566; BS 47567; BS 47568; BS 47569; BS 47570; BS 47571; BS 47572; BS 47573; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Dof2:MA0020.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10074718 RL Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Dof3/MA0021.1/JASPAR XX ID Dof3:MA0021.1:JASPAR XX NA Dof3 XX DE Dof3 XX OS Zea mays XX BF 1302; XX P0 A C G T 01 21 0 0 0 A 02 21 0 0 0 A 03 21 0 0 0 A 04 0 0 21 0 G 05 0 10 3 8 y 06 6 6 9 0 v XX BS 47574; BS 47575; BS 47576; BS 47577; BS 47578; BS 47579; BS 47580; BS 47581; BS 47582; BS 47583; BS 47584; BS 47585; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Dof3:MA0021.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10074718 RL Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC Gam1/MA0034.1/JASPAR XX ID Gam1:MA0034.1:JASPAR XX NA Gam1 XX DE Gam1 XX OS Hordeum vulgare XX BF 2728; XX P0 A C G T 01 4 6 11 4 g 02 10 5 7 3 r 03 3 13 0 9 y 04 23 1 1 0 A 05 25 0 0 0 A 06 1 24 0 0 C 07 3 14 6 2 c 08 6 0 19 0 G 09 10 11 0 4 m 10 5 19 1 0 C XX BS 47733; BS 47734; BS 47735; BS 47736; BS 47737; BS 47738; BS 47739; BS 47740; BS 47741; BS 47742; BS 47743; BS 47744; BS 47745; BS 47746; BS 47747; BS 47748; BS 47749; BS 47750; BS 47751; BS 47752; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=Gam1:MA0034.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10069063 RL Gubler F., Raventos D., Keys M., Watts R., Mundy J., Jacobsen J. V. Target genes and regulatory domains of the GAMYB transcriptional activator in cereal aleurone. Plant J. 17:1-9 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC HMG-I/Y/MA0045.1/JASPAR XX ID HMG-I/Y:MA0045.1:JASPAR XX NA HMG-I/Y XX DE HMG-I/Y XX OS Pisum sativum XX BF 17439; XX P0 A C G T 01 3 5 4 2 s 02 7 0 3 4 w 03 9 1 1 3 a 04 3 6 4 1 s 05 11 0 3 0 A 06 11 0 2 1 A 07 11 0 2 1 A 08 3 3 2 6 t 09 4 1 8 1 r 10 3 4 6 1 s 11 8 5 1 0 m 12 8 1 4 1 r 13 9 0 2 3 a 14 9 5 0 0 m 15 11 0 3 0 A 16 2 7 0 5 y XX BS 47976; BS 47977; BS 47978; BS 47979; BS 47980; BS 47981; BS 47982; BS 47983; BS 47984; BS 47985; BS 47986; BS 47987; BS 47988; BS 47989; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=HMG-I/Y:MA0045.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 9161031 RL Webster C.I, Packman L.C, Pwee K.H, Gray J.C. High mobility group proteins HMG-1 and HMG-I/Y bind to a positive regulatory region of the pea plastocyanin gene promoter. The Plant journal : for cell and molecular biology 11:703-15 (1997). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MNB1A/MA0053.1/JASPAR XX ID MNB1A:MA0053.1:JASPAR XX NA MNB1A XX DE MNB1A XX OS Zea mays XX BF 483; XX P0 A C G T 01 15 0 0 0 A 02 15 0 0 0 A 03 15 0 0 0 A 04 0 0 15 0 G 05 3 9 0 3 c XX BS 48135; BS 48136; BS 48137; BS 48138; BS 48139; BS 48140; BS 48141; BS 48142; BS 48143; BS 48144; BS 48145; BS 48146; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MNB1A:MA0053.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10074718 RL Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC myb.Ph3/MA0054.1/JASPAR XX ID myb.Ph3:MA0054.1:JASPAR XX NA myb.Ph3 XX DE myb.Ph3 XX OS Petunia x hybrida XX BF 741; XX P0 A C G T 01 19 3 2 46 w 02 64 1 2 3 A 03 63 0 2 5 A 04 4 62 3 1 C 05 10 27 16 17 c 06 10 2 53 5 G 07 13 8 0 49 T 08 3 17 1 49 T 09 28 1 0 41 w XX BS 48147; BS 48148; BS 48149; BS 48150; BS 48151; BS 48152; BS 48153; BS 48154; BS 48155; BS 48156; BS 48157; BS 48158; BS 48159; BS 48160; BS 48161; BS 48162; BS 48163; BS 48164; BS 48165; BS 48166; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=myb.Ph3:MA0054.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 7737128 RL Solano R., Nieto C., Avila J., Canas L., Diaz I., Paz-Ares J. Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida. EMBO J. 14:1773-1784 (1995). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC PBF/MA0064.1/JASPAR XX ID PBF:MA0064.1:JASPAR XX NA PBF XX DE PBF XX OS Zea mays XX BF 4000; XX P0 A C G T 01 16 0 0 0 A 02 16 0 0 0 A 03 16 0 0 0 A 04 0 0 16 0 G 05 1 9 1 5 y XX BS 48351; BS 48352; BS 48353; BS 48354; BS 48355; BS 48356; BS 48357; BS 48358; BS 48359; BS 48360; BS 48361; BS 48362; BS 48363; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=PBF:MA0064.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10074718 RL Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC squamosa/MA0082.1/JASPAR XX ID squamosa:MA0082.1:JASPAR XX NA squamosa XX DE squamosa XX OS Antirrhinum majus XX BF 1421; XX P0 A C G T 01 11 14 1 4 m 02 0 22 0 8 Y 03 24 0 4 2 A 04 16 2 1 11 w 05 23 0 0 7 A 06 17 0 0 13 w 07 24 1 0 5 A 08 8 0 1 21 W 09 14 1 15 0 r 10 1 1 28 0 G 11 14 5 1 10 w 12 25 5 0 0 A 13 21 2 3 4 A 14 7 5 8 10 k XX BS 48750; BS 48751; BS 48752; BS 48753; BS 48754; BS 48755; BS 48756; BS 48757; BS 48758; BS 48759; BS 48760; BS 48761; BS 48762; BS 48763; BS 48764; BS 48765; BS 48766; BS 48767; BS 48768; BS 48769; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=squamosa:MA0082.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 9826749 RL West A.G, Causier B.E, Davies B, Sharrocks A.D. DNA binding and dimerisation determinants of Antirrhinum majus MADS-box transcription factors. Nucleic acids research 26:5277-87 (1998). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bZIP910/MA0096.1/JASPAR XX ID bZIP910:MA0096.1:JASPAR XX NA bZIP910 XX DE bZIP910 XX OS Antirrhinum majus XX BF 1339; XX P0 A C G T 01 15 15 5 0 m 02 0 0 0 35 T 03 0 0 35 0 G 04 35 0 0 0 A 05 0 35 0 0 C 06 0 0 35 0 G 07 0 0 0 35 T XX BS 49055; BS 49056; BS 49057; BS 49058; BS 49059; BS 49060; BS 49061; BS 49062; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bZIP910:MA0096.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 9680995 RL Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC bZIP911/MA0097.1/JASPAR XX ID bZIP911:MA0097.1:JASPAR XX NA bZIP911 XX DE bZIP911 XX OS Antirrhinum majus XX BF 1340; XX P0 A C G T 01 1 0 31 1 G 02 17 0 16 0 r 03 0 0 0 33 T 04 0 0 33 0 G 05 33 0 0 0 A 06 0 33 0 0 C 07 0 0 33 0 G 08 0 0 0 33 T 09 0 1 32 0 G 10 1 0 22 10 k 11 11 20 1 1 m 12 1 32 0 0 C XX BS 49063; BS 49064; BS 49065; BS 49066; BS 49067; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=bZIP911:MA0097.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 9680995 RL Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-5/MA0110.1/JASPAR XX ID ATHB-5:MA0110.1:JASPAR XX NA ATHB-5 XX DE ATHB-5 XX OS Arabidopsis thaliana XX BF 17238; BF 3982; XX P0 A C G T 01 3 19 9 6 c 02 1 29 4 3 C 03 30 6 0 1 A 04 37 0 0 0 A 05 0 0 0 37 T 06 2 5 10 20 k 07 37 0 0 0 A 08 0 0 0 37 T 09 0 0 0 37 T XX BS 49448; BS 49449; BS 49450; BS 49451; BS 49452; BS 49453; BS 49454; BS 49455; BS 49456; BS 49457; BS 49458; BS 49459; BS 49460; BS 49461; BS 49462; BS 49463; BS 49464; BS 49465; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-5:MA0110.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-5/MA0110.2/JASPAR XX ID ATHB-5:MA0110.2:JASPAR XX NA ATHB-5 XX DE ATHB-5 XX OS Arabidopsis thaliana XX BF 3982; XX P0 A C G T 01 0 9 12 9 b 02 4 9 17 4 s 03 2 12 8 14 y 04 2 17 10 7 s 05 0 32 4 3 C 06 32 6 0 1 A 07 39 0 0 0 A 08 0 0 0 39 T 09 2 8 7 22 t 10 39 0 0 0 A 11 0 0 0 39 T 12 0 0 0 39 T 13 0 0 7 1 G XX BS 49466; BS 49467; BS 49468; BS 49469; BS 49470; BS 49471; BS 49472; BS 49473; BS 49474; BS 49475; BS 49476; BS 49477; BS 49478; BS 49479; BS 49480; BS 49481; BS 49482; BS 49483; BS 49484; BS 49485; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-5:MA0110.2:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC id1/MA0120.1/JASPAR XX ID id1:MA0120.1:JASPAR XX NA id1 XX DE id1 XX OS Zea mays XX BF 1702; XX P0 A C G T 01 1 1 2 20 T 02 3 3 4 14 t 03 1 2 9 12 k 04 0 9 3 12 y 05 0 13 4 7 y 06 2 11 4 7 y 07 3 8 2 11 y 08 1 1 1 21 T 09 8 5 1 10 w 10 0 6 7 11 b 11 0 17 0 7 Y 12 2 0 18 4 G XX BS 49662; BS 49663; BS 49664; BS 49665; BS 49666; BS 49667; BS 49668; BS 49669; BS 49670; BS 49671; BS 49672; BS 49673; BS 49674; BS 49675; BS 49676; BS 49677; BS 49678; BS 49679; BS 49680; BS 49681; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=id1:MA0120.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 15020707 RL Kozaki A., Hake S., Colasanti J. The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.. Nucleic Acids Res. 32:1710-1720 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR10/MA0121.1/JASPAR XX ID ARR10:MA0121.1:JASPAR XX NA ARR10 XX DE ARR10 XX OS Arabidopsis thaliana XX BF 4026; XX P0 A C G T 01 14 1 0 0 A 02 0 0 15 0 G 03 14 0 1 0 A 04 0 0 0 15 T 05 4 6 0 5 h 06 1 8 0 6 y 07 0 0 9 6 k 08 3 6 4 2 s XX BS 49682; BS 49683; BS 49684; BS 49685; BS 49686; BS 49687; BS 49688; BS 49689; BS 49690; BS 49691; BS 49692; BS 49693; BS 49694; BS 49695; BS 49696; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR10:MA0121.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 12215502 RL Hosoda K., Imamura A., Katoh E., Hatta T., Tachiki M., Yamada H., Mizuno T., Yamazaki T. Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators.. Plant Cell 14:2015-2029 (2002). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC abi4/MA0123.1/JASPAR XX ID abi4:MA0123.1:JASPAR XX NA abi4 XX DE abi4 XX OS Zea mays XX BF 2312; XX P0 A C G T 01 0 49 0 0 C 02 12 0 37 0 G 03 0 20 29 0 s 04 0 23 1 25 y 05 1 3 45 0 G 06 0 45 4 0 C 07 5 28 6 10 c 08 3 25 11 10 c 09 3 31 5 10 c 10 4 26 7 12 c XX BS 49717; BS 49718; BS 49719; BS 49720; BS 49721; BS 49722; BS 49723; BS 49724; BS 49725; BS 49726; BS 49727; BS 49728; BS 49729; BS 49730; BS 49731; BS 49732; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=abi4:MA0123.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 12368505 RL Niu X., Helentjaris T., Bate N. J. Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes.. Plant Cell 14:2565-2575 (2002). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC EmBP-1/MA0128.1/JASPAR XX ID EmBP-1:MA0128.1:JASPAR XX NA EmBP-1 XX DE EmBP-1 XX OS Triticum aestivum XX BF 507; XX P0 A C G T 01 9 0 0 4 W 02 1 7 4 1 s 03 13 0 0 0 A 04 0 12 0 1 C 05 0 0 13 0 G 06 0 0 0 13 T 07 0 1 12 0 G 08 0 1 12 0 G XX BS 49802; BS 49803; BS 49804; BS 49805; BS 49806; BS 49807; BS 49808; BS 49809; BS 49810; BS 49811; BS 49812; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=EmBP-1:MA0128.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 10561063 RL Niu X., Renshaw-Gegg L., Miller L., Guiltinan M. J. Bipartite determinants of DNA-binding specificity of plant basic leucine zipper proteins.. Plant Mol. Biol. 41:1-13 (1999). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AGL15/MA0548.2/JASPAR XX ID AGL15:MA0548.2:JASPAR XX NA AGL15 XX DE AGL15 XX OS Arabidopsis thaliana XX BF 3011; XX P0 A C G T 01 133 218 137 111 c 02 48 33 5 513 T 03 16 5 3 575 T 04 84 8 21 486 T 05 0 596 0 3 C 06 0 435 0 164 Y 07 200 80 50 269 w 08 88 85 53 373 t 09 162 0 4 433 W 10 7 8 0 584 T 11 89 45 31 434 T 12 138 42 168 251 k 13 125 1 473 0 G 14 0 0 585 14 G 15 325 50 28 196 w 16 543 13 5 38 A 17 475 7 29 88 A 18 113 175 185 126 s 19 157 77 50 315 w XX BS 54393; BS 54394; BS 54395; BS 54396; BS 54397; BS 54398; BS 54399; BS 54400; BS 54401; BS 54402; BS 54403; BS 54404; BS 54405; BS 54406; BS 54407; BS 54408; BS 54409; BS 54410; BS 54411; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AGL15:MA0548.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 12743119 RL Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BZR1/MA0550.2/JASPAR XX ID BZR1:MA0550.2:JASPAR XX NA BZR1 XX DE BZR1 XX OS Arabidopsis thaliana XX BF 2997; XX P0 A C G T 01 95 260 131 102 c 02 4 519 4 61 C 03 351 34 203 0 r 04 0 575 0 13 C 05 573 1 4 10 A 06 0 588 0 0 C 07 0 0 588 0 G 08 5 0 0 583 T 09 0 0 588 0 G 10 11 277 39 261 y 11 213 47 280 48 r 12 198 148 91 151 h 13 165 169 114 140 m 14 106 152 78 252 y 15 111 171 133 173 y 16 166 144 73 205 w 17 141 158 98 191 y 18 150 131 121 186 w 19 164 152 85 187 h 20 96 136 126 230 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BZR1:MA0550.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 15681342 RL He J. X., Gendron J. M., Sun Y., Gampala S. S., Gendron N., Sun C. Q., Wang Z. Y. BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses.. Science 307:1634-1638 (2005). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL14/MA0586.2/JASPAR XX ID SPL14:MA0586.2:JASPAR XX NA SPL14 XX DE SPL14 XX OS Arabidopsis thaliana XX BF 3015; XX P0 A C G T 01 125 7 74 377 t 02 23 534 0 26 C 03 0 583 0 0 C 04 0 0 583 0 G 05 0 0 0 583 T 06 583 0 0 0 A 07 0 581 0 2 C 08 302 87 129 65 a 09 239 105 113 126 a 10 164 104 83 232 w 11 148 86 104 245 w XX BS 54719; BS 54720; BS 54721; BS 54722; BS 54723; BS 54724; BS 54725; BS 54726; BS 54727; BS 54728; BS 54729; BS 54730; BS 54731; BS 54732; BS 54733; BS 54734; BS 54735; BS 54736; BS 54737; BS 54738; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL14:MA0586.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 18302343 RL Liang X., Nazarenus T. J., Stone J. M. Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance.. Biochemistry 47:3645-3653 (2008). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ZAP1/MA0589.1/JASPAR XX ID ZAP1:MA0589.1:JASPAR XX NA ZAP1 XX DE ZAP1 XX OS Arabidopsis thaliana XX BF 17534; XX P0 A C G T 01 0 0 0 50 T 02 0 0 0 50 T 03 0 0 50 0 G 04 50 0 0 0 A 05 0 50 0 0 C 06 1 47 1 1 C 07 2 5 40 3 G 08 32 11 4 3 a 09 2 7 37 4 G 10 2 28 5 14 y 11 8 20 5 13 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ZAP1:MA0589.1:JASPAR XX CC SELEX XX RN [1]; RX PUBMED: 8972846 RL de Pater S., Greco V., Pham K., Memelink J., Kijne J. Characterization of a zinc-dependent transcriptional activator from Arabidopsis. Nucleic Acids Res. 24:4624-4631 (1996). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AHL12/MA0932.1/JASPAR XX ID AHL12:MA0932.1:JASPAR XX NA AHL12 XX DE AHL12 XX OS Arabidopsis thaliana XX BF 8859; XX P0 A C G T 01 772 18 146 64 A 02 843 35 24 98 A 03 484 14 5 497 w 04 332 6 3 660 w 05 660 3 6 332 w 06 497 5 14 484 w 07 98 24 35 843 T 08 64 146 18 772 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AHL12:MA0932.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22442143 RL Yun J, Kim YS, Jung JH, Seo PJ, Park CM. The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis. J Biol Chem 287:15307-16 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AHL20/MA0933.1/JASPAR XX ID AHL20:MA0933.1:JASPAR XX NA AHL20 XX DE AHL20 XX OS Arabidopsis thaliana XX BF 8860; XX P0 A C G T 01 774 66 73 88 A 02 753 6 5 235 A 03 120 4 13 862 T 04 250 6 6 738 W 05 774 4 4 218 A 06 843 8 1 148 A 07 648 12 3 337 w 08 54 28 18 900 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AHL20:MA0933.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22442143 RL Yun J, Kim YS, Jung JH, Seo PJ, Park CM. The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis. J Biol Chem 287:15307-16 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AHL25/MA0934.1/JASPAR XX ID AHL25:MA0934.1:JASPAR XX NA AHL25 XX DE AHL25 XX OS Arabidopsis thaliana XX BF 8861; XX P0 A C G T 01 872 26 53 49 A 02 616 4 6 375 w 03 207 4 3 786 T 04 225 3 2 770 T 05 770 2 3 225 A 06 786 3 4 207 A 07 375 6 4 616 w 08 49 53 26 872 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AHL25:MA0934.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22442143 RL Yun J, Kim YS, Jung JH, Seo PJ, Park CM. The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis. J Biol Chem 287:15307-16 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC T11I18.17/MA0936.1/JASPAR XX ID T11I18.17:MA0936.1:JASPAR XX NA T11I18.17 XX DE T11I18.17 XX OS Arabidopsis thaliana XX BF 8862; XX P0 A C G T 01 544 217 80 159 a 02 66 630 38 267 y 03 813 120 43 24 A 04 102 858 24 16 C 05 94 49 812 45 G 06 143 565 112 180 c 07 459 402 48 91 m 08 805 40 96 59 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=T11I18.17:MA0936.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC055/MA0937.1/JASPAR XX ID NAC055:MA0937.1:JASPAR XX NA NAC055 XX DE NAC055 XX OS Arabidopsis thaliana XX BF 8863; XX P0 A C G T 01 796 26 44 134 A 02 19 774 18 188 C 03 970 18 4 9 A 04 22 960 6 12 C 05 16 16 948 20 G 06 14 116 134 736 T 07 878 80 4 37 A 08 866 9 4 121 A XX BS 55033; BS 55034; BS 55035; BS 55036; BS 55037; BS 55038; BS 55039; BS 55040; BS 55041; BS 55042; BS 55043; BS 55044; BS 55045; BS 55046; BS 55047; BS 55048; BS 55049; BS 55050; BS 55051; BS 55052; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC055:MA0937.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NAC058/MA0938.1/JASPAR XX ID NAC058:MA0938.1:JASPAR XX NA NAC058 XX DE NAC058 XX OS Arabidopsis thaliana XX BF 8864; XX P0 A C G T 01 370 124 344 162 r 02 95 674 55 177 c 03 913 34 22 31 A 04 257 694 26 23 M 05 26 38 908 28 G 06 116 693 72 120 C 07 628 245 20 107 a 08 770 88 26 116 A XX BS 55053; BS 55054; BS 55055; BS 55056; BS 55057; BS 55058; BS 55059; BS 55060; BS 55061; BS 55062; BS 55063; BS 55064; BS 55065; BS 55066; BS 55067; BS 55068; BS 55069; BS 55070; BS 55071; BS 55072; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NAC058:MA0938.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24914054 RL Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR11/MA0946.1/JASPAR XX ID ARR11:MA0946.1:JASPAR XX NA ARR11 XX DE ARR11 XX OS Arabidopsis thaliana XX BF 8865; XX P0 A C G T 01 625 51 55 269 w 02 927 11 29 32 A 03 5 2 982 11 G 04 989 2 4 4 A 05 7 3 2 987 T 06 732 22 4 242 A 07 3 833 2 162 C 08 14 5 968 13 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR11:MA0946.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 12610214 RL Imamura A, Kiba T, Tajima Y, Yamashino T, Mizuno T. In vivo and in vitro characterization of the ARR11 response regulator implicated in the His-to-Asp phosphorelay signal transduction in Arabidopsis thaliana. Plant Cell Physiol 44:122-31 (2003). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARR14/MA0947.1/JASPAR XX ID ARR14:MA0947.1:JASPAR XX NA ARR14 XX DE ARR14 XX OS Arabidopsis thaliana XX BF 8866; XX P0 A C G T 01 945 5 26 24 A 02 2 1 984 13 G 03 991 1 3 5 A 04 2 3 2 993 T 05 506 154 1 339 w 06 1 960 1 38 C 07 10 5 960 26 G 08 83 484 401 32 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARR14:MA0947.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-12/MA0950.1/JASPAR XX ID ATHB-12:MA0950.1:JASPAR XX NA ATHB-12 XX DE ATHB-12 XX OS Arabidopsis thaliana XX BF 8867; XX P0 A C G T 01 579 191 107 124 a 02 668 46 53 233 a 03 18 35 6 941 T 04 48 201 633 118 g 05 965 7 15 13 A 06 9 8 17 966 T 07 30 10 19 940 T 08 128 18 766 88 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-12:MA0950.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-51/MA0952.1/JASPAR XX ID ATHB-51:MA0952.1:JASPAR XX NA ATHB-51 XX DE ATHB-51 XX OS Arabidopsis thaliana XX BF 8868; XX P0 A C G T 01 691 253 4 51 M 02 985 5 4 7 A 03 2 8 1 988 T 04 411 6 3 580 w 05 990 2 5 3 A 06 10 2 4 984 T 07 5 18 12 965 T 08 105 18 777 100 G XX BS 55131; BS 55132; BS 55133; BS 55134; BS 55135; BS 55136; BS 55137; BS 55138; BS 55139; BS 55140; BS 55141; BS 55142; BS 55143; BS 55144; BS 55145; BS 55146; BS 55147; BS 55148; BS 55149; BS 55150; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-51:MA0952.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 16554366 RL Saddic LA, Huvermann B, Bezhani S, Su Y, Winter CM, Kwon CS, Collum RP, Wagner D. The LEAFY target LMI1 is a meristem identity regulator and acts together with LEAFY to regulate expression of CAULIFLOWER. Development 133:1673-82 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB7/MA0954.2/JASPAR XX ID ATHB7:MA0954.2:JASPAR XX NA ATHB7 XX DE ATHB7 XX OS Arabidopsis thaliana XX BF 12011; XX P0 A C G T 01 92 58 68 382 t 02 53 389 92 66 c 03 473 62 11 54 A 04 560 3 0 37 A 05 0 1 1 598 T 06 2 2 464 132 G 07 600 0 0 0 A 08 0 0 0 600 T 09 0 0 2 598 T 10 37 3 551 9 G 11 324 46 181 49 r 12 174 57 98 271 w 13 128 91 93 288 t XX BS 55171; BS 55172; BS 55173; BS 55174; BS 55175; BS 55176; BS 55177; BS 55178; BS 55179; BS 55180; BS 55181; BS 55182; BS 55183; BS 55184; BS 55185; BS 55186; BS 55187; BS 55188; BS 55189; BS 55190; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB7:MA0954.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC BZIP60/MA0967.1/JASPAR XX ID BZIP60:MA0967.1:JASPAR XX NA BZIP60 XX DE BZIP60 XX OS Arabidopsis thaliana XX BF 8909; XX P0 A C G T 01 18 64 24 893 T 02 26 59 840 74 G 03 892 17 43 49 A 04 13 799 13 175 C 05 175 13 799 13 G 06 49 43 17 892 T 07 74 840 59 26 C 08 893 24 64 18 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=BZIP60:MA0967.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 8487298 RL Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC CCA1/MA0972.1/JASPAR XX ID CCA1:MA0972.1:JASPAR XX NA CCA1 XX DE CCA1 XX OS Arabidopsis thaliana XX BF 2814; XX P0 A C G T 01 934 1 10 54 A 02 960 1 37 2 A 03 985 4 10 1 A 04 35 0 5 960 T 05 992 5 1 2 A 06 1 12 1 986 T 07 5 991 0 4 C 08 21 91 14 874 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=CCA1:MA0972.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 19218364 RL Lu S. X., Knowles S. M., Andronis C., Ong M. S., Tobin E. M. CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL Function Synergistically in the Circadian Clock of Arabidopsis.. Plant Physiol. 150:834-843 (2009). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF2.5/MA0977.1/JASPAR XX ID DOF2.5:MA0977.1:JASPAR XX NA DOF2.5 XX DE DOF2.5 XX OS Arabidopsis thaliana XX BF 12119; XX P0 A C G T 01 756 26 182 36 A 02 598 1 12 389 w 03 990 1 4 5 A 04 986 1 8 6 A 05 744 1 254 1 R 06 4 1 977 18 G 07 8 198 65 729 T 08 238 44 557 160 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF2.5:MA0977.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DREB1E/MA0978.1/JASPAR XX ID DREB1E:MA0978.1:JASPAR XX NA DREB1E XX DE DREB1E XX OS Arabidopsis thaliana XX BF 12107; XX P0 A C G T 01 978 2 15 4 A 02 9 15 3 973 T 03 6 1 991 3 G 04 3 3 2 992 T 05 3 992 1 4 C 06 2 2 992 4 G 07 169 0 828 2 G 08 1 790 1 208 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DREB1E:MA0978.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 18643985 RL Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant J 56:613-26 (2008). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF008/MA0979.1/JASPAR XX ID ERF008:MA0979.1:JASPAR XX NA ERF008 XX DE ERF008 XX OS Arabidopsis thaliana XX BF 5573; XX P0 A C G T 01 148 787 24 41 C 02 335 15 634 17 r 03 27 889 58 26 C 04 39 934 19 8 C 05 66 44 865 26 G 06 320 524 56 101 m 07 70 828 68 34 C 08 100 417 329 154 s XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF008:MA0979.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2-10/MA0980.1/JASPAR XX ID RAP2-10:MA0980.1:JASPAR XX NA RAP2-10 XX DE RAP2-10 XX OS Arabidopsis thaliana XX BF 5593; XX P0 A C G T 01 33 128 757 83 G 02 22 942 14 22 C 03 117 5 872 7 G 04 6 912 78 4 C 05 4 981 9 6 C 06 9 7 952 32 G 07 8 838 85 69 C 08 33 859 16 92 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2-10:MA0980.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DOF5.7/MA0984.1/JASPAR XX ID DOF5.7:MA0984.1:JASPAR XX NA DOF5.7 XX DE DOF5.7 XX OS Arabidopsis thaliana XX BF 8872; XX P0 A C G T 01 448 86 224 241 a 02 684 12 61 243 A 03 970 4 10 16 A 04 899 3 79 19 A 05 363 42 589 6 r 06 485 61 443 11 r 07 102 191 460 247 g 08 174 215 408 204 g XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DOF5.7:MA0984.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10758479 RL Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC DREB2C/MA0986.1/JASPAR XX ID DREB2C:MA0986.1:JASPAR XX NA DREB2C XX DE DREB2C XX OS Arabidopsis thaliana XX BF 8874; XX P0 A C G T 01 110 757 121 13 C 02 809 3 185 3 A 03 4 985 3 8 C 04 7 986 3 4 C 05 8 3 984 4 G 06 776 158 47 19 A 07 5 977 5 13 C 08 806 50 27 117 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=DREB2C:MA0986.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 23868510 RL Je J, Song C, Hwang JE, Chung WS, Lim CO. DREB2C acts as a transcriptional activator of the thermo tolerance-related phytocystatin 4 (AtCYS4) gene. Transgenic Res 23:109-23 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF105/MA1000.2/JASPAR XX ID ERF105:MA1000.2:JASPAR XX NA ERF105 XX DE ERF105 XX OS Arabidopsis thaliana XX BF 10428; XX P0 A C G T 01 144 57 278 107 g 02 149 181 36 220 h 03 168 44 257 117 r 04 189 37 312 48 r 05 50 307 0 229 y 06 0 0 586 0 G 07 21 0 565 0 G 08 1 569 0 16 C 09 0 0 586 0 G 10 0 1 585 0 G 11 21 544 0 21 C 12 1 0 523 62 G 13 78 109 382 17 g 14 211 204 60 111 m 15 123 27 330 106 g XX BS 55383; BS 55384; BS 55385; BS 55386; BS 55387; BS 55388; BS 55389; BS 55390; BS 55391; BS 55392; BS 55393; BS 55394; BS 55395; BS 55396; BS 55397; BS 55398; BS 55399; BS 55400; BS 55401; BS 55402; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF105:MA1000.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 9756931 RL Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ARF3/MA1009.1/JASPAR XX ID ARF3:MA1009.1:JASPAR XX NA ARF3 XX DE ARF3 XX OS Arabidopsis thaliana XX BF 8875; XX P0 A C G T 01 2 4 77 917 T 02 2 3 991 3 G 03 1 16 2 981 T 04 2 990 1 6 C 05 2 8 980 10 G 06 3 24 964 10 G 07 618 124 212 46 a 08 575 95 191 139 a XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ARF3:MA1009.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24485461 RL Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC GATA12/MA1015.1/JASPAR XX ID GATA12:MA1015.1:JASPAR XX NA GATA12 XX DE GATA12 XX OS Arabidopsis thaliana XX BF 8876; XX P0 A C G T 01 190 282 146 382 y 02 599 112 230 59 a 03 189 67 738 6 G 04 968 2 22 7 A 05 7 22 2 968 T 06 6 738 67 189 C 07 59 230 112 599 t 08 382 146 282 190 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=GATA12:MA1015.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 12504119 RL Jeong MJ, Shih MC. Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem Biophys Res Commun 300:555-62 (2003). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB-15/MA1026.1/JASPAR XX ID ATHB-15:MA1026.1:JASPAR XX NA ATHB-15 XX DE ATHB-15 XX OS Arabidopsis thaliana XX BF 12121; XX P0 A C G T 01 93 172 60 675 t 02 722 193 57 28 A 03 926 32 15 26 A 04 46 10 16 928 T 05 274 62 282 381 d 06 928 16 10 46 A 07 26 15 32 926 T 08 28 57 193 722 T XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB-15:MA1026.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ATHB15/MA1026.2/JASPAR XX ID ATHB15:MA1026.2:JASPAR XX NA ATHB15 XX DE ATHB15 XX OS Arabidopsis thaliana XX BF 12121; BF 8880; XX P0 A C G T 01 265 43 158 124 r 02 363 31 84 112 a 03 268 35 60 227 w 04 212 63 131 184 w 05 199 46 329 16 r 06 13 97 0 480 T 07 518 1 68 3 A 08 590 0 0 0 A 09 0 0 0 590 T 10 27 82 462 19 G 11 590 0 0 0 A 12 0 0 0 590 T 13 10 0 218 362 k 14 494 1 87 8 A 15 97 248 63 182 y XX BS 55481; BS 54698; BS 54697; BS 55482; BS 54696; BS 54681; BS 55483; BS 55484; BS 54682; BS 54686; BS 55485; BS 55486; BS 54680; BS 55487; BS 54692; BS 54690; BS 54693; BS 54694; BS 54695; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ATHB15:MA1026.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 11247607 RL Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC KAN1/MA1027.1/JASPAR XX ID KAN1:MA1027.1:JASPAR XX NA KAN1 XX DE KAN1 XX OS Arabidopsis thaliana XX BF 8881; XX P0 A C G T 01 433 129 237 200 a 02 259 213 285 242 r 03 618 16 43 323 w 04 128 192 58 623 t 05 898 14 68 20 A 06 54 87 19 840 T 07 36 147 169 648 t 08 63 876 18 44 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=KAN1:MA1027.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 24464295 RL Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA. Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors. Plant Cell 26:246-62 (2014). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC KAN4/MA1028.1/JASPAR XX ID KAN4:MA1028.1:JASPAR XX NA KAN4 XX DE KAN4 XX OS Arabidopsis thaliana XX BF 8882; XX P0 A C G T 01 11 10 965 14 G 02 941 12 26 21 A 03 905 2 2 92 A 04 2 102 3 893 T 05 893 3 102 2 A 06 92 2 2 905 T 07 21 26 12 941 T 08 14 965 10 11 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=KAN4:MA1028.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 20444210 RL Gao P, Li X, Cui D, Wu L, Parkin I, Gruber MY. A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4. Plant Biotechnol J 8:979-93 (2010). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB111/MA1036.1/JASPAR XX ID MYB111:MA1036.1:JASPAR XX NA MYB111 XX DE MYB111 XX OS Arabidopsis thaliana XX BF 8884; XX P0 A C G T 01 229 4 757 10 G 02 5 2 636 357 k 03 3 12 4 981 T 04 874 7 10 109 A 05 18 4 976 2 G 06 6 8 858 128 G 07 6 4 5 985 T 08 525 30 390 55 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB111:MA1036.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB46/MA1040.1/JASPAR XX ID MYB46:MA1040.1:JASPAR XX NA MYB46 XX DE MYB46 XX OS Arabidopsis thaliana XX BF 8885; XX P0 A C G T 01 81 3 911 5 G 02 3 2 387 608 k 03 6 7 1 985 T 04 836 30 6 128 A 05 4 4 991 2 G 06 5 3 898 95 G 07 2 33 1 964 T 08 580 24 358 38 r XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB46:MA1040.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB55/MA1041.1/JASPAR XX ID MYB55:MA1041.1:JASPAR XX NA MYB55 XX DE MYB55 XX OS Arabidopsis thaliana XX BF 12099; XX P0 A C G T 01 980 1 16 3 A 02 48 946 2 4 C 03 2 989 2 6 C 04 227 49 23 701 T 05 979 1 16 4 A 06 267 730 1 2 M 07 2 958 1 39 C 08 118 54 756 72 G XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB55:MA1041.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB59/MA1042.1/JASPAR XX ID MYB59:MA1042.1:JASPAR XX NA MYB59 XX DE MYB59 XX OS Arabidopsis thaliana XX BF 8888; XX P0 A C G T 01 357 14 548 80 r 02 17 7 114 862 T 03 31 14 6 949 T 04 874 39 17 71 A 05 17 8 956 19 G 06 24 11 948 18 G 07 39 40 5 916 T 08 552 267 23 158 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB59:MA1042.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 22197883 RL Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF018/MA1048.1/JASPAR XX ID ERF018:MA1048.1:JASPAR XX NA ERF018 XX DE ERF018 XX OS Arabidopsis thaliana XX BF 8889; XX P0 A C G T 01 581 1 412 6 r 02 1 993 2 4 C 03 6 990 2 1 C 04 2 2 993 2 G 05 718 8 65 208 A 06 3 991 1 5 C 07 44 943 1 12 C 08 735 10 70 184 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF018:MA1048.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2-3/MA1051.1/JASPAR XX ID RAP2-3:MA1051.1:JASPAR XX NA RAP2-3 XX DE RAP2-3 XX OS Arabidopsis thaliana XX BF 2841; XX P0 A C G T 01 119 232 543 107 g 02 147 761 33 58 C 03 7 6 982 5 G 04 6 746 244 4 C 05 16 977 4 3 C 06 6 3 976 15 G 07 109 780 26 85 C 08 257 664 6 73 m XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2-3:MA1051.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RAP2-6/MA1052.1/JASPAR XX ID RAP2-6:MA1052.1:JASPAR XX NA RAP2-6 XX DE RAP2-6 XX OS Arabidopsis thaliana XX BF 5568; XX P0 A C G T 01 34 271 681 14 S 02 27 958 7 8 C 03 7 2 989 2 G 04 2 894 104 1 C 05 12 985 2 1 C 06 4 3 990 3 G 07 20 947 14 20 C 08 66 921 2 10 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RAP2-6:MA1052.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 15319480 RL Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC ERF109/MA1053.1/JASPAR XX ID ERF109:MA1053.1:JASPAR XX NA ERF109 XX DE ERF109 XX OS Arabidopsis thaliana XX BF 8891; XX P0 A C G T 01 38 287 661 13 s 02 50 936 8 6 C 03 3 5 989 3 G 04 3 827 168 2 C 05 13 982 2 3 C 06 4 13 978 5 G 07 38 862 13 86 C 08 207 773 2 18 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=ERF109:MA1053.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 25882345 RL Matsuo M, Johnson JM, Hieno A, Tokizawa M, Nomoto M, Tada Y, Godfrey R, Obokata J, Sherameti I, Yamamoto YY, Böhmer FD, Oelmüller R. High REDOX RESPONSIVE TRANSCRIPTION FACTOR1 Levels Result in Accumulation of Reactive Oxygen Species in Arabidopsis thaliana Shoots and Roots. Mol Plant 8:1253-73 (2015). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL1/MA1055.1/JASPAR XX ID SPL1:MA1055.1:JASPAR XX NA SPL1 XX DE SPL1 XX OS Arabidopsis thaliana XX BF 8893; XX P0 A C G T 01 31 880 8 81 C 02 10 924 13 53 C 03 14 2 982 2 G 04 2 8 6 984 T 05 984 6 8 2 A 06 2 982 2 14 C 07 53 13 924 10 G 08 81 8 880 31 G XX BS 54733; BS 55547; BS 54738; BS 55548; BS 54720; BS 55549; BS 55550; BS 54737; BS 54728; BS 55551; BS 55552; BS 54730; BS 55553; BS 54732; BS 54734; BS 55554; BS 54721; BS 55555; BS 54736; BS 55556; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL1:MA1055.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL5/MA1059.2/JASPAR XX ID SPL5:MA1059.2:JASPAR XX NA SPL5 XX DE SPL5 XX OS Arabidopsis thaliana XX BF 11682; XX P0 A C G T 01 244 107 109 138 a 02 273 73 123 129 a 03 102 150 89 257 y 04 25 153 36 384 y 05 0 0 598 0 G 06 0 0 0 598 T 07 598 0 0 0 A 08 0 598 0 0 C 09 0 0 598 0 G 10 0 0 598 0 G 11 546 8 1 43 A 12 170 259 19 150 h XX BS 55557; BS 55558; BS 55559; BS 55560; BS 55561; BS 55562; BS 55563; BS 55564; BS 55565; BS 55566; BS 55567; BS 55568; BS 55569; BS 55570; BS 55571; BS 55572; BS 55573; BS 55574; BS 55575; BS 55576; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL5:MA1059.2:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SPL7/MA1060.1/JASPAR XX ID SPL7:MA1060.1:JASPAR XX NA SPL7 XX DE SPL7 XX OS Arabidopsis thaliana XX BF 12068; XX P0 A C G T 01 51 777 123 49 C 02 42 26 912 20 G 03 43 12 89 856 T 04 885 62 22 31 A 05 39 922 14 25 C 06 65 106 798 31 G 07 286 208 365 142 r 08 118 614 41 227 c XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SPL7:MA1060.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 16554053 RL Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP15/MA1062.1/JASPAR XX ID TCP15:MA1062.1:JASPAR XX NA TCP15 XX DE TCP15 XX OS Arabidopsis thaliana XX BF 5383; XX P0 A C G T 01 6 2 978 14 G 02 5 3 989 2 G 03 60 138 771 30 G 04 8 950 6 36 C 05 2 990 1 7 C 06 3 986 2 9 C 07 949 12 36 3 A 08 6 962 20 12 C XX BS 55577; BS 55578; BS 55579; BS 55580; BS 55581; BS 55582; BS 55583; BS 55584; BS 55585; BS 55586; BS 55587; BS 55588; BS 55589; BS 55590; BS 55591; BS 55592; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP15:MA1062.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCP23/MA1066.1/JASPAR XX ID TCP23:MA1066.1:JASPAR XX NA TCP23 XX DE TCP23 XX OS Arabidopsis thaliana XX BF 8896; XX P0 A C G T 01 5 3 966 26 G 02 10 5 980 5 G 03 37 88 835 41 G 04 7 971 8 13 C 05 4 984 8 4 C 06 12 980 3 6 C 07 954 10 31 5 A 08 10 959 11 21 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCP23:MA1066.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 21241251 RL Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TGA2/MA1068.1/JASPAR XX ID TGA2:MA1068.1:JASPAR XX NA TGA2 XX DE TGA2 XX OS Arabidopsis thaliana XX BF 3636; XX P0 A C G T 01 961 1 24 13 A 02 1 980 3 16 C 03 24 2 974 1 G 04 6 5 1 988 T 05 27 970 2 1 C 06 989 2 7 3 A 07 2 110 380 508 k 08 78 704 161 58 C XX BS 55601; BS 55602; BS 55603; BS 55604; BS 55605; BS 55606; BS 55607; BS 55608; BS 55609; BS 55610; BS 55611; BS 55612; BS 55613; BS 55614; BS 55615; BS 55616; BS 55617; BS 55618; BS 55619; BS 55620; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TGA2:MA1068.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 10662863 RL Despres C., DeLong C., Glaze S., Liu E., Fobert P. R. The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors.. Plant Cell 12:279-290 (2000). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY12/MA1075.1/JASPAR XX ID WRKY12:MA1075.1:JASPAR XX NA WRKY12 XX DE WRKY12 XX OS Arabidopsis thaliana XX BF 8900; XX P0 A C G T 01 172 707 76 46 C 02 70 33 819 78 G 03 20 62 5 913 T 04 10 15 29 946 T 05 8 6 954 33 G 06 971 6 10 14 A 07 29 949 5 16 C 08 25 722 101 151 C XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY12:MA1075.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY38/MA1084.1/JASPAR XX ID WRKY38:MA1084.1:JASPAR XX NA WRKY38 XX DE WRKY38 XX OS Arabidopsis thaliana XX BF 8901; XX P0 A C G T 01 152 672 73 104 c 02 69 28 849 55 G 03 26 30 21 923 T 04 8 23 39 930 T 05 9 16 961 14 G 06 955 17 10 18 A 07 16 951 13 20 C 08 15 679 17 289 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY38:MA1084.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY40/MA1085.2/JASPAR XX ID WRKY40:MA1085.2:JASPAR XX NA WRKY40 XX DE WRKY40 XX OS Arabidopsis thaliana XX BF 11814; XX P0 A C G T 01 89 49 34 62 w 02 107 34 38 55 a 03 234 0 0 0 A 04 0 0 234 0 G 05 0 0 0 234 T 06 0 234 0 0 C 07 230 0 0 4 A 08 232 0 0 2 A 09 83 54 46 51 a 10 76 48 50 60 w XX BS 55694; BS 55695; BS 55696; BS 55697; BS 55698; BS 55699; BS 55700; BS 55701; BS 55702; BS 55703; BS 55704; BS 55705; BS 55706; BS 55707; BS 55708; BS 55709; BS 55710; BS 55711; BS 55712; BS 55713; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY40:MA1085.2:JASPAR XX CC ChIP-seq XX RN [1]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC WRKY45/MA1087.1/JASPAR XX ID WRKY45:MA1087.1:JASPAR XX NA WRKY45 XX DE WRKY45 XX OS Arabidopsis thaliana XX BF 8902; XX P0 A C G T 01 60 875 25 40 C 02 15 4 892 89 G 03 6 18 2 974 T 04 4 3 11 982 T 05 4 3 985 7 G 06 988 5 2 4 A 07 6 986 3 5 C 08 8 531 11 450 y XX BS 55714; BS 55715; BS 55716; BS 55717; BS 55718; BS 55719; BS 55720; BS 55721; BS 55722; BS 55723; BS 55724; BS 55725; BS 55726; BS 55727; BS 55728; BS 55729; BS 55730; BS 55731; BS 55732; BS 55733; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=WRKY45:MA1087.1:JASPAR XX CC PBM XX RN [1]; RX PUBMED: 11449049 RL Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. RN [2]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC JKD/MA1156.1/JASPAR XX ID JKD:MA1156.1:JASPAR XX NA JKD XX DE JKD XX OS Arabidopsis thaliana XX BF 12435; XX P0 A C G T 01 163 108 67 258 w 02 161 99 72 264 w 03 162 101 79 254 w 04 176 63 75 282 w 05 145 70 74 307 t 06 83 30 31 452 T 07 6 24 13 553 T 08 0 5 4 587 T 09 0 10 0 586 T 10 0 0 596 0 G 11 0 0 13 583 T 12 11 564 0 21 C 13 31 62 331 172 k 14 9 20 42 525 T 15 57 99 34 406 T 16 87 0 0 509 T 17 134 27 8 427 T 18 71 228 193 104 s 19 47 135 39 375 t 20 143 55 209 189 k XX BS 56264; BS 56265; BS 56266; BS 56267; BS 56268; BS 56269; BS 56270; BS 56271; BS 56272; BS 56273; BS 56274; BS 56275; BS 56276; BS 56277; BS 56278; BS 56279; BS 56280; BS 56281; BS 56282; BS 56283; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=JKD:MA1156.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 24039602 RL Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC NUC/MA1157.1/JASPAR XX ID NUC:MA1157.1:JASPAR XX NA NUC XX DE NUC XX OS Arabidopsis thaliana XX BF 12497; XX P0 A C G T 01 139 103 87 241 t 02 141 104 90 235 t 03 151 109 83 227 w 04 170 77 84 239 w 05 127 76 85 282 t 06 70 47 42 411 T 07 8 33 19 510 T 08 0 5 8 557 T 09 0 8 0 562 T 10 0 0 570 0 G 11 0 0 5 565 T 12 0 570 0 0 C 13 18 51 381 120 g 14 3 19 33 515 T 15 63 89 46 372 t 16 74 0 3 493 T 17 148 41 15 366 w 18 56 183 202 129 s 19 24 148 55 343 y 20 131 54 227 158 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=NUC:MA1157.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 24039602 RL Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MGP/MA1158.1/JASPAR XX ID MGP:MA1158.1:JASPAR XX NA MGP XX DE MGP XX OS Arabidopsis thaliana XX BF 12446; XX P0 A C G T 01 187 203 50 154 h 02 363 50 139 42 a 03 143 183 185 83 s 04 402 15 50 127 a 05 512 0 2 80 A 06 421 26 73 74 A 07 552 21 20 1 A 08 153 379 52 10 m 09 0 0 594 0 G 10 593 0 1 0 A 11 0 594 0 0 C 12 578 0 16 0 A 13 587 3 4 0 A 14 566 9 16 3 A 15 484 28 19 63 A 16 319 80 56 139 a 17 285 77 68 164 w 18 269 72 112 141 a 19 257 80 94 163 w 20 263 68 104 159 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MGP:MA1158.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 24039602 RL Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC SGR5/MA1159.1/JASPAR XX ID SGR5:MA1159.1:JASPAR XX NA SGR5 XX DE SGR5 XX OS Arabidopsis thaliana XX BF 17260; BF 17732; XX P0 A C G T 01 293 126 40 141 a 02 343 57 160 40 r 03 340 48 116 96 a 04 433 0 44 123 A 05 310 16 27 247 w 06 486 22 92 0 A 07 532 4 22 42 A 08 33 0 566 1 G 09 591 6 0 3 A 10 0 599 1 0 C 11 592 1 7 0 A 12 598 1 0 1 A 13 560 10 11 19 A 14 428 34 21 117 A 15 285 83 43 189 w XX BS 56284; BS 56285; BS 56286; BS 56287; BS 56288; BS 56289; BS 56290; BS 56291; BS 56292; BS 56293; BS 56294; BS 56295; BS 56296; BS 56297; BS 56298; BS 56299; BS 56300; BS 56301; BS 56302; BS 56303; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=SGR5:MA1159.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 24039602 RL Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G14580/MA1160.1/JASPAR XX ID AT1G14580:MA1160.1:JASPAR XX NA AT1G14580 XX DE AT1G14580 XX OS Arabidopsis thaliana XX BF 12330; XX P0 A C G T 01 61 36 32 113 w 02 61 32 34 115 w 03 60 43 32 107 t 04 72 27 28 115 w 05 58 23 28 133 t 06 25 15 11 191 T 07 0 6 5 231 T 08 0 2 0 240 T 09 0 6 1 235 T 10 0 1 240 1 G 11 0 2 15 225 T 12 2 237 0 3 C 13 13 21 154 54 g 14 2 9 14 217 T 15 7 32 13 190 T 16 35 0 6 201 T 17 65 5 1 171 W 18 21 89 108 24 s 19 4 66 4 168 Y 20 38 15 117 72 k XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G14580:MA1160.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 24039602 RL Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TSO1/MA1161.1/JASPAR XX ID TSO1:MA1161.1:JASPAR XX NA TSO1 XX DE TSO1 XX OS Arabidopsis thaliana XX BF 12529; XX P0 A C G T 01 136 15 28 85 w 02 97 9 28 130 w 03 71 11 8 174 w 04 54 6 9 195 T 05 86 38 15 125 w 06 160 26 41 37 a 07 228 0 35 1 A 08 232 1 16 15 A 09 244 0 0 20 A 10 0 8 3 253 T 11 0 0 0 264 T 12 0 69 0 195 Y 13 214 0 45 5 A 14 264 0 0 0 A 15 264 0 0 0 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TSO1:MA1161.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC TCX2/MA1162.1/JASPAR XX ID TCX2:MA1162.1:JASPAR XX NA TCX2 XX DE TCX2 XX OS Arabidopsis thaliana XX BF 12522; XX P0 A C G T 01 257 49 61 232 w 02 135 23 28 413 T 03 60 41 1 497 T 04 54 173 41 331 y 05 292 132 107 68 a 06 559 6 26 8 A 07 554 14 1 30 A 08 514 0 14 71 A 09 10 1 7 581 T 10 0 0 0 599 T 11 0 318 0 281 y 12 435 1 163 0 R 13 599 0 0 0 A 14 599 0 0 0 A 15 178 93 10 318 w XX BS 56304; BS 56305; BS 56306; BS 56307; BS 56308; BS 56309; BS 56310; BS 56311; BS 56312; BS 56313; BS 56314; BS 56315; BS 56316; BS 56317; BS 56318; BS 56319; BS 56320; BS 56321; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=TCX2:MA1162.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G45580/MA1163.1/JASPAR XX ID AT5G45580:MA1163.1:JASPAR XX NA AT5G45580 XX DE AT5G45580 XX OS Arabidopsis thaliana XX BF 17254; BF 17761; XX P0 A C G T 01 310 76 110 101 a 02 319 32 106 140 a 03 280 46 128 143 a 04 259 82 256 0 r 05 0 0 597 0 G 06 546 44 0 7 A 07 597 0 0 0 A 08 0 0 0 597 T 09 399 198 0 0 m 10 29 0 0 568 T 11 83 7 12 495 T 12 62 352 23 160 y 13 76 180 97 244 y 14 150 104 148 195 w XX BS 56322; BS 56323; BS 56324; BS 56325; BS 56326; BS 56327; BS 56328; BS 56329; BS 56330; BS 56331; BS 56332; BS 56333; BS 56334; BS 56335; BS 56336; BS 56337; BS 56338; BS 56339; BS 56340; BS 56341; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G45580:MA1163.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT4G37180/MA1164.1/JASPAR XX ID AT4G37180:MA1164.1:JASPAR XX NA AT4G37180 XX DE AT4G37180 XX OS Arabidopsis thaliana XX BF 12304; XX P0 A C G T 01 212 168 57 163 h 02 264 99 111 126 a 03 304 39 166 91 r 04 489 19 29 63 A 05 597 0 0 3 A 06 0 0 513 87 G 07 600 0 0 0 A 08 2 0 0 598 T 09 14 1 5 580 T 10 0 600 0 0 C 11 79 233 70 218 y XX BS 56342; BS 56343; BS 56344; BS 56345; BS 56346; BS 56347; BS 56348; BS 56349; BS 56350; BS 56351; BS 56352; BS 56353; BS 56354; BS 56355; BS 56356; BS 56357; BS 56358; BS 56359; BS 56360; BS 56361; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT4G37180:MA1164.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT1G49560/MA1165.1/JASPAR XX ID AT1G49560:MA1165.1:JASPAR XX NA AT1G49560 XX DE AT1G49560 XX OS Arabidopsis thaliana XX BF 12268; XX P0 A C G T 01 436 35 58 70 A 02 78 88 4 429 T 03 90 375 30 104 c 04 211 141 98 149 a 05 317 78 95 109 a 06 484 15 35 65 A 07 0 0 585 14 G 08 599 0 0 0 A 09 0 0 0 599 T 10 27 16 0 556 T 11 0 599 0 0 C XX BS 56362; BS 56363; BS 56364; BS 56365; BS 56366; BS 56367; BS 56368; BS 56369; BS 56370; BS 56371; BS 56372; BS 56373; BS 56374; BS 56375; BS 56376; BS 56377; BS 56378; BS 56379; BS 56380; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT1G49560:MA1165.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G12730/MA1166.1/JASPAR XX ID AT3G12730:MA1166.1:JASPAR XX NA AT3G12730 XX DE AT3G12730 XX OS Arabidopsis thaliana XX BF 12351; XX P0 A C G T 01 54 14 23 14 a 02 67 9 12 17 a 03 80 3 17 5 A 04 43 16 44 2 r 05 42 10 53 0 r 06 4 0 101 0 G 07 99 0 1 5 A 08 105 0 0 0 A 09 0 0 1 104 T 10 83 22 0 0 A 11 0 0 0 105 T 12 3 0 0 102 T 13 0 86 0 19 C 14 7 44 14 40 y XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G12730:MA1166.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT2G03500/MA1167.1/JASPAR XX ID AT2G03500:MA1167.1:JASPAR XX NA AT2G03500 XX DE AT2G03500 XX OS Arabidopsis thaliana XX BF 12342; XX P0 A C G T 01 316 6 229 49 r 02 0 0 600 0 G 03 544 0 4 52 A 04 600 0 0 0 A 05 0 0 0 600 T 06 490 110 0 0 A 07 1 1 0 598 T 08 95 70 34 401 t 09 28 529 12 31 C 10 138 158 149 155 y 11 206 79 166 149 r XX BS 56381; BS 56382; BS 56383; BS 56384; BS 56385; BS 56386; BS 56387; BS 56388; BS 56389; BS 56390; BS 56391; BS 56392; BS 56393; BS 56394; BS 56395; BS 56396; BS 56397; BS 56398; BS 56399; BS 56400; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT2G03500:MA1167.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G04030/MA1168.1/JASPAR XX ID AT3G04030:MA1168.1:JASPAR XX NA AT3G04030 XX DE AT3G04030 XX OS Arabidopsis thaliana XX BF 11454; XX P0 A C G T 01 257 84 115 142 a 02 315 33 103 147 a 03 206 62 174 156 d 04 262 97 239 0 r 05 0 0 597 1 G 06 586 10 0 2 A 07 596 0 0 2 A 08 0 0 0 598 T 09 288 310 0 0 m 10 13 0 0 585 T 11 85 20 55 438 T 12 108 241 33 216 y 13 110 131 102 255 t 14 146 96 131 225 t XX BS 56401; BS 56402; BS 56403; BS 56404; BS 56405; BS 56406; BS 56407; BS 56408; BS 56409; BS 56410; BS 56411; BS 56337; BS 56412; BS 56324; BS 56338; BS 56331; BS 56413; BS 56414; BS 56415; BS 56416; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G04030:MA1168.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB105/MA1169.1/JASPAR XX ID MYB105:MA1169.1:JASPAR XX NA MYB105 XX DE MYB105 XX OS Arabidopsis thaliana XX BF 12450; XX P0 A C G T 01 36 0 13 46 w 02 18 21 6 50 t 03 35 29 3 28 h 04 35 7 22 31 w 05 44 5 0 46 w 06 42 3 8 42 w 07 79 0 1 15 A 08 0 95 0 0 C 09 3 85 7 0 C 10 0 0 95 0 G 11 0 0 0 95 T 12 0 0 1 94 T 13 80 2 6 7 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB105:MA1169.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB118/MA1170.1/JASPAR XX ID MYB118:MA1170.1:JASPAR XX NA MYB118 XX DE MYB118 XX OS Arabidopsis thaliana XX BF 12454; XX P0 A C G T 01 135 34 40 69 a 02 129 35 34 80 w 03 117 33 32 96 w 04 107 34 51 86 w 05 51 80 29 118 y 06 164 7 84 23 r 07 146 0 57 75 w 08 78 178 22 0 m 09 6 251 19 2 C 10 0 0 278 0 G 11 0 0 0 278 T 12 1 0 0 277 T 13 278 0 0 0 A 14 2 270 0 6 C 15 145 5 78 50 r 16 123 24 23 108 w 17 138 22 18 100 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB118:MA1170.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB52/MA1171.1/JASPAR XX ID MYB52:MA1171.1:JASPAR XX NA MYB52 XX DE MYB52 XX OS Arabidopsis thaliana XX BF 8886; XX P0 A C G T 01 27 39 12 31 y 02 35 10 29 35 d 03 35 7 17 50 w 04 32 16 15 46 w 05 100 0 0 9 A 06 0 109 0 0 C 07 0 95 14 0 C 08 0 0 109 0 G 09 0 0 0 109 T 10 0 0 0 109 T 11 81 0 10 18 A XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB52:MA1171.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB3R5/MA1172.1/JASPAR XX ID MYB3R5:MA1172.1:JASPAR XX NA MYB3R5 XX DE MYB3R5 XX OS Arabidopsis thaliana XX BF 12465; XX P0 A C G T 01 258 77 97 134 a 02 306 65 65 130 a 03 339 21 48 158 w 04 312 22 19 213 w 05 203 56 40 267 w 06 199 79 127 161 w 07 41 59 50 416 T 08 196 0 224 146 d 09 389 4 154 19 R 10 20 546 0 0 C 11 0 566 0 0 C 12 0 0 566 0 G 13 0 2 0 564 T 14 4 0 0 562 T 15 238 0 291 37 r XX BS 56417; BS 56418; BS 56419; BS 56420; BS 56421; BS 56422; BS 56423; BS 56424; BS 56425; BS 56426; BS 56427; BS 56428; BS 56429; BS 56430; BS 56431; BS 56432; BS 56433; BS 56434; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB3R5:MA1172.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB101/MA1173.1/JASPAR XX ID MYB101:MA1173.1:JASPAR XX NA MYB101 XX DE MYB101 XX OS Arabidopsis thaliana XX BF 12449; XX P0 A C G T 01 327 82 86 105 a 02 369 53 70 108 a 03 198 249 47 106 m 04 140 261 44 155 y 05 180 120 188 112 r 06 160 51 47 342 w 07 596 2 1 1 A 08 598 0 2 0 A 09 0 600 0 0 C 10 54 424 49 73 C 11 86 4 510 0 G 12 367 43 27 163 w 13 407 72 2 119 a 14 206 112 22 260 w 15 139 181 68 212 y XX BS 56435; BS 56436; BS 56437; BS 56438; BS 56439; BS 56440; BS 56441; BS 56442; BS 56443; BS 56444; BS 56445; BS 56446; BS 56447; BS 56448; BS 56449; BS 56450; BS 56451; BS 56452; BS 56453; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB101:MA1173.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB56/MA1174.1/JASPAR XX ID MYB56:MA1174.1:JASPAR XX NA MYB56 XX DE MYB56 XX OS Arabidopsis thaliana XX BF 12471; XX P0 A C G T 01 236 49 114 201 w 02 169 73 78 280 w 03 265 106 71 158 w 04 270 80 103 147 a 05 333 91 45 131 a 06 1 3 0 596 T 07 600 0 0 0 A 08 600 0 0 0 A 09 0 600 0 0 C 10 26 35 417 122 G 11 143 0 457 0 G 12 223 41 2 334 w 13 237 143 13 207 w 14 194 58 25 323 w 15 133 135 37 295 t XX BS 56454; BS 56455; BS 56456; BS 56457; BS 56458; BS 56459; BS 56460; BS 56461; BS 56462; BS 56463; BS 56464; BS 56465; BS 56466; BS 56467; BS 56468; BS 56469; BS 56470; BS 56471; BS 56472; BS 56473; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB56:MA1174.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB81/MA1175.1/JASPAR XX ID MYB81:MA1175.1:JASPAR XX NA MYB81 XX DE MYB81 XX OS Arabidopsis thaliana XX BF 12483; XX P0 A C G T 01 149 163 223 65 s 02 30 99 0 471 T 03 600 0 0 0 A 04 600 0 0 0 A 05 0 600 0 0 C 06 118 234 114 134 c 07 94 0 506 0 G 08 268 102 0 230 w 09 264 95 1 240 w 10 124 59 7 410 T 11 113 180 39 268 y XX BS 56474; BS 56475; BS 56476; BS 56477; BS 56478; BS 56479; BS 56480; BS 56481; BS 56482; BS 56483; BS 56484; BS 56485; BS 56486; BS 56487; BS 56488; BS 56489; BS 56490; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB81:MA1175.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB119/MA1176.1/JASPAR XX ID MYB119:MA1176.1:JASPAR XX NA MYB119 XX DE MYB119 XX OS Arabidopsis thaliana XX BF 12455; XX P0 A C G T 01 93 179 78 248 y 02 287 27 188 96 r 03 252 0 117 229 w 04 173 392 33 0 m 05 16 514 68 0 C 06 0 0 598 0 G 07 0 0 0 598 T 08 0 1 0 597 T 09 576 0 1 21 A 10 13 506 7 72 C 11 316 36 155 91 r XX BS 56491; BS 56492; BS 56493; BS 56494; BS 56495; BS 56496; BS 56497; BS 56498; BS 56499; BS 56500; BS 56501; BS 56502; BS 56503; BS 56504; BS 56505; BS 56506; BS 56507; BS 56508; BS 56509; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB119:MA1176.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB65/MA1177.1/JASPAR XX ID MYB65:MA1177.1:JASPAR XX NA MYB65 XX DE MYB65 XX OS Arabidopsis thaliana XX BF 12478; XX P0 A C G T 01 284 61 105 149 a 02 129 250 41 179 y 03 105 218 65 211 y 04 183 121 205 90 r 05 75 75 0 449 T 06 599 0 0 0 A 07 599 0 0 0 A 08 0 599 0 0 C 09 38 354 118 89 c 10 76 0 523 0 G 11 178 153 4 264 h 12 280 219 2 98 m 13 266 57 75 201 w XX BS 56510; BS 56511; BS 56512; BS 56513; BS 56514; BS 56515; BS 56516; BS 56517; BS 56518; BS 56519; BS 56520; BS 56521; BS 56522; BS 56523; BS 56524; BS 56525; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB65:MA1177.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB3R1/MA1178.1/JASPAR XX ID MYB3R1:MA1178.1:JASPAR XX NA MYB3R1 XX DE MYB3R1 XX OS Arabidopsis thaliana XX BF 14428; BF 17758; XX P0 A C G T 01 274 83 91 152 w 02 290 51 87 172 w 03 327 33 22 218 w 04 191 63 52 294 w 05 232 86 123 159 w 06 45 72 51 432 T 07 220 2 228 150 d 08 422 2 126 50 A 09 48 552 0 0 C 10 0 600 0 0 C 11 0 0 600 0 G 12 0 0 0 600 T 13 0 0 0 600 T 14 317 1 235 47 r 15 164 132 192 112 r XX BS 56526; BS 56527; BS 56528; BS 56529; BS 56530; BS 56531; BS 56532; BS 56533; BS 56534; BS 56535; BS 56536; BS 56537; BS 56538; BS 56539; BS 56540; BS 56541; BS 56542; BS 56543; BS 56544; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB3R1:MA1178.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB1/MA1179.1/JASPAR XX ID MYB1:MA1179.1:JASPAR XX NA MYB1 XX DE MYB1 XX OS Arabidopsis thaliana XX BF 7514; XX P0 A C G T 01 48 10 47 39 d 02 35 17 11 81 t 03 48 8 26 62 w 04 95 1 32 16 a 05 0 144 0 0 C 06 3 89 52 0 s 07 0 0 144 0 G 08 0 0 0 144 T 09 0 0 0 144 T 10 97 0 8 39 w 11 73 16 19 36 w 12 75 13 18 38 w 13 44 11 45 44 d 14 41 36 20 47 h 15 32 35 15 62 t 16 19 38 65 22 s 17 27 25 29 63 t 18 28 23 17 76 t 19 60 3 39 42 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB1:MA1179.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB3R4/MA1180.1/JASPAR XX ID MYB3R4:MA1180.1:JASPAR XX NA MYB3R4 XX DE MYB3R4 XX OS Arabidopsis thaliana XX BF 12464; XX P0 A C G T 01 261 91 80 163 w 02 289 48 88 170 w 03 311 33 31 220 w 04 180 69 52 294 w 05 235 102 116 142 a 06 27 71 41 456 T 07 258 2 225 110 r 08 388 1 180 26 r 09 29 566 0 0 C 10 0 595 0 0 C 11 0 0 595 0 G 12 0 0 0 595 T 13 0 0 0 595 T 14 262 3 301 29 r 15 151 115 202 127 r XX BS 56536; BS 56539; BS 56545; BS 56535; BS 56546; BS 56547; BS 56544; BS 56548; BS 56529; BS 56538; BS 56530; BS 56526; BS 56549; BS 56550; BS 56542; BS 56551; BS 56541; BS 56540; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB3R4:MA1180.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC MYB113/MA1181.1/JASPAR XX ID MYB113:MA1181.1:JASPAR XX NA MYB113 XX DE MYB113 XX OS Arabidopsis thaliana XX BF 12452; XX P0 A C G T 01 257 41 130 158 w 02 426 5 46 109 A 03 132 0 290 164 k 04 102 0 44 440 T 05 1 299 0 286 y 06 259 195 54 78 m 07 0 0 586 0 G 08 0 0 3 583 T 09 0 0 0 586 T 10 548 0 38 0 A 11 40 139 89 318 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=MYB113:MA1181.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At3g09600/MA1182.1/JASPAR XX ID At3g09600:MA1182.1:JASPAR XX NA At3g09600 XX DE At3g09600 XX OS Arabidopsis thaliana XX BF 12349; XX P0 A C G T 01 490 8 38 57 A 02 0 0 593 0 G 03 593 0 0 0 A 04 0 0 0 593 T 05 590 0 0 3 A 06 0 2 0 591 T 07 0 0 0 593 T 08 50 2 0 541 T 09 115 44 35 399 t 10 132 111 92 258 t 11 167 73 133 220 w 12 145 96 123 229 t XX BS 56552; BS 56553; BS 56554; BS 56555; BS 56556; BS 56557; BS 56558; BS 56559; BS 56560; BS 56561; BS 56562; BS 56563; BS 56564; BS 56565; BS 56566; BS 56567; BS 56568; BS 56569; BS 56570; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At3g09600:MA1182.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At5g52660/MA1183.1/JASPAR XX ID At5g52660:MA1183.1:JASPAR XX NA At5g52660 XX DE At5g52660 XX OS Arabidopsis thaliana XX BF 12365; XX P0 A C G T 01 521 2 44 29 A 02 0 0 596 0 G 03 596 0 0 0 A 04 0 0 0 596 T 05 579 1 0 16 A 06 0 2 0 594 T 07 0 0 0 596 T 08 40 0 1 555 T 09 113 36 20 427 T 10 90 109 92 305 t 11 134 91 141 230 t XX BS 56571; BS 56572; BS 56573; BS 56574; BS 56575; BS 56576; BS 56577; BS 56578; BS 56579; BS 56580; BS 56581; BS 56582; BS 56583; BS 56584; BS 56585; BS 56586; BS 56587; BS 56588; BS 56589; BS 56590; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At5g52660:MA1183.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC RVE1/MA1184.1/JASPAR XX ID RVE1:MA1184.1:JASPAR XX NA RVE1 XX DE RVE1 XX OS Arabidopsis thaliana XX BF 8892; XX P0 A C G T 01 234 117 106 143 a 02 203 147 101 149 a 03 237 124 142 97 a 04 332 42 58 168 w 05 526 0 0 74 A 06 600 0 0 0 A 07 586 5 4 5 A 08 4 0 10 586 T 09 600 0 0 0 A 10 0 0 0 600 T 11 0 600 0 0 C 12 85 42 12 461 T 13 205 103 77 215 w 14 254 130 87 129 a XX BS 56591; BS 56592; BS 56593; BS 56594; BS 56595; BS 56596; BS 56597; BS 56598; BS 56599; BS 56600; BS 56601; BS 56602; BS 56603; BS 56604; BS 56605; BS 56606; BS 56607; BS 56608; BS 56609; BS 56610; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=RVE1:MA1184.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LHY1/MA1185.1/JASPAR XX ID LHY1:MA1185.1:JASPAR XX NA LHY1 XX DE LHY1 XX OS Arabidopsis thaliana XX BF 17259; BF 17711; XX P0 A C G T 01 512 1 31 55 A 02 0 0 599 0 G 03 599 0 0 0 A 04 0 0 0 599 T 05 597 2 0 0 A 06 0 8 5 586 T 07 3 0 3 593 T 08 51 6 0 542 T 09 172 46 34 347 w 10 113 144 117 225 t XX BS 56611; BS 56612; BS 56613; BS 56614; BS 56615; BS 56616; BS 56617; BS 56618; BS 56619; BS 56620; BS 56621; BS 56622; BS 56623; BS 56624; BS 56625; BS 56626; BS 56627; BS 56628; BS 56629; BS 56630; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LHY1:MA1185.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At1g49010/MA1186.1/JASPAR XX ID At1g49010:MA1186.1:JASPAR XX NA At1g49010 XX DE At1g49010 XX OS Arabidopsis thaliana XX BF 17712; XX P0 A C G T 01 189 152 84 174 h 02 199 103 62 235 w 03 162 112 63 262 w 04 325 65 54 155 w 05 330 20 31 218 w 06 14 321 31 233 y 07 89 428 67 15 C 08 18 12 0 569 T 09 24 54 0 521 T 10 598 0 0 1 A 11 0 0 0 599 T 12 0 599 0 0 C 13 81 279 4 235 y 14 243 49 47 260 w 15 194 202 24 179 h XX BS 56631; BS 56632; BS 56633; BS 56634; BS 56635; BS 56636; BS 56637; BS 56638; BS 56639; BS 56640; BS 56641; BS 56642; BS 56643; BS 56644; BS 56645; BS 56646; BS 56647; BS 56648; BS 56649; BS 56650; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At1g49010:MA1186.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC LCL1/MA1187.1/JASPAR XX ID LCL1:MA1187.1:JASPAR XX NA LCL1 XX DE LCL1 XX OS Arabidopsis thaliana XX BF 12442; XX P0 A C G T 01 526 0 24 11 A 02 0 0 558 3 G 03 561 0 0 0 A 04 0 1 0 560 T 05 548 1 0 12 A 06 0 1 4 556 T 07 0 1 0 560 T 08 16 0 0 545 T 09 79 25 10 447 T 10 95 100 93 273 t XX BS 56651; BS 56652; BS 56653; BS 56654; BS 56655; BS 56656; BS 56657; BS 56658; BS 56659; BS 56660; BS 56661; BS 56662; BS 56663; BS 56664; BS 56665; BS 56666; BS 56667; BS 56668; BS 56669; BS 56670; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=LCL1:MA1187.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At3g11280/MA1188.1/JASPAR XX ID At3g11280:MA1188.1:JASPAR XX NA At3g11280 XX DE At3g11280 XX OS Arabidopsis thaliana XX BF 12350; XX P0 A C G T 01 361 46 60 115 a 02 260 16 28 278 w 03 29 326 34 193 y 04 117 360 64 41 c 05 0 17 0 565 T 06 4 93 0 485 T 07 582 0 0 0 A 08 0 3 6 573 T 09 0 582 0 0 C 10 120 144 22 296 t 11 122 63 52 345 t 12 189 195 51 147 h 13 290 15 28 249 w 14 112 155 30 285 y XX BS 56671; BS 56672; BS 56673; BS 56674; BS 56675; BS 56676; BS 56677; BS 56678; BS 56679; BS 56680; BS 56681; BS 56682; BS 56683; BS 56684; BS 56685; BS 56686; BS 56687; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At3g11280:MA1188.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G61620/MA1189.1/JASPAR XX ID AT5G61620:MA1189.1:JASPAR XX NA AT5G61620 XX DE AT5G61620 XX OS Arabidopsis thaliana XX BF 12315; XX P0 A C G T 01 205 82 149 163 w 02 257 18 68 256 w 03 208 10 10 371 w 04 175 30 112 282 w 05 114 58 6 421 T 06 96 0 503 0 G 07 0 0 599 0 G 08 599 0 0 0 A 09 0 0 0 599 T 10 559 16 9 15 A 11 512 0 53 34 A 12 151 47 310 91 r 13 264 55 191 89 r 14 185 71 35 308 w 15 179 52 62 306 w XX BS 56688; BS 56689; BS 56690; BS 56691; BS 56692; BS 56693; BS 56694; BS 56695; BS 56696; BS 56697; BS 56698; BS 56699; BS 56700; BS 56701; BS 56702; BS 56703; BS 56704; BS 56705; BS 56706; BS 56707; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT5G61620:MA1189.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At4g01280/MA1190.1/JASPAR XX ID At4g01280:MA1190.1:JASPAR XX NA At4g01280 XX DE At4g01280 XX OS Arabidopsis thaliana XX BF 12354; XX P0 A C G T 01 533 4 36 26 A 02 0 0 599 0 G 03 599 0 0 0 A 04 0 0 0 599 T 05 551 0 0 48 A 06 0 1 0 598 T 07 1 0 0 598 T 08 27 0 0 572 T 09 116 33 26 424 T 10 98 107 83 311 t 11 153 105 120 221 w XX BS 56708; BS 56709; BS 56590; BS 56710; BS 56711; BS 56712; BS 56579; BS 56713; BS 56714; BS 56583; BS 56715; BS 56716; BS 56585; BS 56717; BS 56588; BS 56718; BS 56719; BS 56720; BS 56571; BS 56721; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At4g01280:MA1190.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G10113/MA1191.1/JASPAR XX ID AT3G10113:MA1191.1:JASPAR XX NA AT3G10113 XX DE AT3G10113 XX OS Arabidopsis thaliana XX BF 12287; XX P0 A C G T 01 169 143 95 192 w 02 234 129 93 143 a 03 207 147 93 152 w 04 226 120 147 106 a 05 334 54 51 160 w 06 540 1 5 53 A 07 599 0 0 0 A 08 596 0 3 0 A 09 0 0 3 596 T 10 599 0 0 0 A 11 0 0 0 599 T 12 0 599 0 0 C 13 108 78 15 398 t 14 199 103 79 218 w 15 287 103 91 118 a XX BS 56722; BS 56723; BS 56724; BS 56725; BS 56726; BS 56727; BS 56728; BS 56729; BS 56730; BS 56731; BS 56732; BS 56733; BS 56734; BS 56735; BS 56736; BS 56737; BS 56738; BS 56739; BS 56740; BS 56741; XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G10113:MA1191.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At5g58900/MA1192.1/JASPAR XX ID At5g58900:MA1192.1:JASPAR XX NA At5g58900 XX DE At5g58900 XX OS Arabidopsis thaliana XX BF 12366; XX P0 A C G T 01 246 27 25 282 w 02 187 65 142 186 w 03 218 47 57 258 w 04 229 7 313 31 r 05 0 0 575 5 G 06 580 0 0 0 A 07 0 0 0 580 T 08 579 0 0 1 A 09 578 0 1 1 A 10 25 53 443 59 G 11 226 36 259 59 r 12 156 62 41 321 w 13 153 55 65 307 w 14 232 53 108 187 w 15 188 63 131 198 w XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At5g58900:MA1192.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC At2g38090/MA1193.1/JASPAR XX ID At2g38090:MA1193.1:JASPAR XX NA At2g38090 XX DE At2g38090 XX OS Arabidopsis thaliana XX BF 12344; XX P0 A C G T 01 30 13 11 10 a 02 38 10 8 8 a 03 28 10 12 14 a 04 32 1 21 10 r 05 24 2 18 20 d 06 34 1 0 29 w 07 17 9 13 25 w 08 26 7 0 31 w 09 20 0 42 2 r 10 0 0 64 0 G 11 64 0 0 0 A 12 0 0 1 63 T 13 62 1 1 0 A 14 63 0 0 1 A 15 12 3 40 9 g 16 18 10 24 12 r 17 42 4 3 15 a 18 7 3 7 47 T 19 26 9 24 5 r 20 30 6 18 10 r 21 21 0 24 19 d XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=At2g38090:MA1193.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT3G10580/MA1194.1/JASPAR XX ID AT3G10580:MA1194.1:JASPAR XX NA AT3G10580 XX DE AT3G10580 XX OS Arabidopsis thaliana XX BF 12288; XX P0 A C G T 01 64 14 33 29 a 02 61 2 31 46 w 03 61 4 2 73 w 04 43 14 30 53 w 05 65 12 11 52 w 06 48 5 76 11 r 07 0 0 132 8 G 08 139 1 0 0 A 09 4 0 0 136 T 10 137 0 0 3 A 11 138 0 1 1 A 12 17 6 97 20 G 13 41 37 53 9 v 14 63 0 0 77 w 15 12 22 12 94 t XX LN https://floresta.eead.csic.es/footprintdb/index.php?motif=AT3G10580:MA1194.1:JASPAR XX CC DAP-seq XX RN [1]; RX PUBMED: 25215497 RL Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. RN [2]; RX PUBMED: 27203113 RL O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). RN [3]; RX PUBMED: 24234003 RL Sebastian, A., Contreras-Moreira, B. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinformatics 30, 258-65 (2014). XX // AC AT5G56840/MA1195.1/JASPAR XX ID AT5G56840:MA1195.1:JASPAR XX NA AT5G56840 XX DE AT5G56840 XX OS Arabidopsis thaliana XX BF 12312; XX P0 A C G T 01 335 45 57 163 w 02 377 20 72 131 a 03 47 324 37 192 y 04 114 358 59 69 c 05 11 24 2 563 T 06 13 19 7 561 T 07 594 3 0 3 A 08 0 2 1 597 T 09 0 600 0 0 C 10 6 481 0 113 C 11 43