; convert-matrix -v 1 -from transfac -i $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012/matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_matrix.tf -to tab -o $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012/matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_matrix_info.txt -bgfile $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/matrix-quality_2018-03-21.1750022nt_upstream-noorf_Escherichia_coli_GCF_000005845.2_ASM584v2-ovlp-1str.freq.gz_inclusive.tab -bg_format inclusive -return counts,frequencies,weights,info,parameters,sites,logo -logo_format png -logo_opt '-e -M -t CRP.RegulonDB2012 ' -logo_file $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012/matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_logo ; Input files ; input /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012/matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_matrix.tf ; prior /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/matrix-quality_2018-03-21.1750022nt_upstream-noorf_Escherichia_coli_GCF_000005845.2_ASM584v2-ovlp-1str.freq.gz_inclusive.tab ; Input format transfac ; Output files ; output /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012/matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_matrix_info.txt ; Output format tab ; pseudo-weight 1 ; Background model ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.29114 ; c 0.20781 ; g 0.20402 ; t 0.29702 A 110 37 37 26 34 192 63 67 52 112 50 129 18 25 231 22 190 86 90 71 51 57 C 43 39 16 48 5 32 47 83 71 32 77 37 15 221 2 224 13 60 19 22 34 41 G 27 23 146 18 195 18 45 41 47 57 79 41 15 12 15 6 41 20 0 20 16 50 T 80 161 61 168 26 18 105 69 90 59 54 53 212 2 12 8 16 94 151 147 159 112 // A 0.4 0.1 0.1 0.1 0.1 0.7 0.2 0.3 0.2 0.4 0.2 0.5 0.1 0.1 0.9 0.1 0.7 0.3 0.3 0.3 0.2 0.2 C 0.2 0.2 0.1 0.2 0.0 0.1 0.2 0.3 0.3 0.1 0.3 0.1 0.1 0.8 0.0 0.9 0.1 0.2 0.1 0.1 0.1 0.2 G 0.1 0.1 0.6 0.1 0.7 0.1 0.2 0.2 0.2 0.2 0.3 0.2 0.1 0.0 0.1 0.0 0.2 0.1 0.0 0.1 0.1 0.2 T 0.3 0.6 0.2 0.6 0.1 0.1 0.4 0.3 0.3 0.2 0.2 0.2 0.8 0.0 0.0 0.0 0.1 0.4 0.6 0.6 0.6 0.4 // A 0.4 -0.7 -0.7 -1.1 -0.8 0.9 -0.2 -0.1 -0.4 0.4 -0.4 0.5 -1.4 -1.1 1.1 -1.2 0.9 0.1 0.2 -0.1 -0.4 -0.3 C -0.2 -0.3 -1.2 -0.1 -2.3 -0.5 -0.1 0.4 0.3 -0.5 0.4 -0.4 -1.3 1.4 -3.2 1.4 -1.4 0.1 -1.0 -0.9 -0.5 -0.3 G -0.7 -0.8 1.0 -1.1 1.3 -1.1 -0.2 -0.3 -0.1 0.1 0.4 -0.3 -1.3 -1.5 -1.3 -2.1 -0.3 -1.0 -5.6 -1.0 -1.2 -0.1 T 0.0 0.7 -0.2 0.8 -1.1 -1.4 0.3 -0.1 0.2 -0.3 -0.4 -0.4 1.0 -3.5 -1.8 -2.2 -1.6 0.2 0.7 0.6 0.7 0.4 // A 0.2 -0.1 -0.1 -0.1 -0.1 0.7 -0.0 -0.0 -0.1 0.2 -0.1 0.3 -0.1 -0.1 1.0 -0.1 0.7 0.0 0.1 -0.0 -0.1 -0.1 C -0.0 -0.0 -0.1 -0.0 -0.0 -0.1 -0.0 0.1 0.1 -0.1 0.1 -0.1 -0.1 1.2 -0.0 1.2 -0.1 0.0 -0.1 -0.1 -0.1 -0.0 G -0.1 -0.1 0.6 -0.1 1.0 -0.1 -0.0 -0.0 -0.0 0.0 0.1 -0.0 -0.1 -0.1 -0.1 -0.1 -0.0 -0.1 -0.0 -0.1 -0.1 -0.0 T 0.0 0.5 -0.1 0.5 -0.1 -0.1 0.1 -0.0 0.1 -0.1 -0.1 -0.1 0.8 -0.0 -0.1 -0.1 -0.1 0.1 0.4 0.4 0.4 0.2 // ; Sites 260 >site_0 ATGTGATTCATATCACATATTT >site_1 CTGTGATTGGTATCACATTTTT >site_2 ATGTGATCCAGATCACATCTAT >site_3 ATCTGACTCACATCACACTTTT >site_4 ATGTTATCCACATCACAATTTC >site_5 ATTTGATACCCATCACACTTTC >site_6 ATGTGATTTTCATCACGATTTA >site_7 ATGTGATTAACAGCACATTTTT >site_8 ATGTGAGTAGTGTCACATTTTT >site_9 ATGTGATTTGCTTCACATCTTT >site_10 GTGTGAAGTTGATCACAAATTT >site_11 ATGTGATACAAATCACATAAAT >site_12 GTGTGATCGTCATCACAATTCG >site_13 ATGAGATTTTCATCACACATTT >site_14 AAGTGATTTAGATCACATAATA >site_15 GTGTGATCTGCATCACGCATTA >site_16 ATGTGTACGAAATCACATTTTT >site_17 TTTTGACATGTATCACAAATTT >site_18 TTGTGATTCAGATCACAAAGAT >site_19 ACGTGATCTTCATCACAAATAA >site_20 TCGTGATCAAGATCACATTCTC >site_21 ACGTGATGATGTTCACAATTTG >site_22 ATTTGAAGTAGCTCACACTTAT >site_23 ATTTGATTTAGATCGCAATTTG >site_24 TTGTGATTCGATTCACATTTAA >site_25 ATGTGATTGATATCACACAAAA >site_26 ATGCGATTCCACTCACAATATT >site_27 AAGTGACCGAAATCACACTTAA >site_28 ATGAGATTCAGATCACATATAA >site_29 GAGTGACGTAGATCACACTTAT >site_30 CTTCGATACACATCACAATTAA >site_31 ATTTGAAGTTCATCACACTTCA >site_32 CGGTGATCTATTTCACAAATTA >site_33 ATGCGATCTATATCACGCTGTG >site_34 ATTTGTTCCTCTTCACATTTTT >site_35 ATTTGCACGGCGTCACACTTTG >site_36 ATGTGAAATAAATCAAAATTTC >site_37 TAGTGATCCACGCCACATTTTG >site_38 TTGCGATCAAAATAACACTTTT >site_39 TTGTGAATCTTTTCACAGTTTA >site_40 ATTCAATATTCATCACACTTTT >site_41 AAGTGATGCAAATCACATAAAT >site_42 TCGTGAACTACGGCACACTTTG >site_43 TTATGACCCTCTTCACATTTCG >site_44 GTGTGATGCAAGCCACATTTTT >site_45 ATGTGAGCGAGATCAAATTCTA >site_46 ACGTGACGTTCATCACAAAACG >site_47 ATGTGAATTGCCGCACACATTA >site_48 ATGTGAGTTAGCTCACTCATTA >site_49 AGGTGAGATGCATCACGCTTCG >site_50 AGGTGACCGGTTTCACAAATAT >site_51 CTGTGAGTGATTTCACAGTATC >site_52 TTGTTATTAGTCTCACACTTTT >site_53 GTGCGAGCCAGCTCAAACTTTT >site_54 ATATGACGGCGGTCACACTTAT >site_55 ATGCGATCTGGTTCAAATAATT >site_56 TTTCGAGGTTGATCACATTTCC >site_57 ATGTGCGACCACTCACAAATTA >site_58 AGGTGAGAGCCATCACAAATGT >site_59 ATGTGAGCCAGCTCACCATAAA >site_60 ATGAGATCGAGCACACATTTTA >site_61 ATGTGAAGCAAATCACCCACTT >site_62 ATTTGAGTAAGTTCTCAATTTT >site_63 TTGTGAGCTTGCTCGCACTTCG >site_64 TTATGACGCTCTTCACACTCTG >site_65 ATGCGCGACGCATCGCAAATTT >site_66 ATATGACAACCATCACAAAAAT >site_67 CTGTAACAGAGATCACACAAAG >site_68 TAGTGAAGCAGATCGCATTATA >site_69 TATTGTCCCCGATCACACTTTT >site_70 CCATGATCCGCGCCACACTTTT >site_71 CAGTGATCCAGGTCACGATAAC >site_72 GTTAAATATAGATCACAATTTT >site_73 TATAGATCTCCGTCACATTTTT >site_74 ATGTGACTACCATCACTTTAAT >site_75 TTGCGAAGCGCGTCACTATTTA >site_76 ATATGACGGTGTTCACAAAGTT >site_77 ATTTGCACTGTGTCACAATTCC >site_78 TTGTGATCGTTATCTCGATATT >site_79 TTGCAAGCAACATCACGAAATT >site_80 GTGTTAAATTGATCACGTTTTA >site_81 TTGCGAGCGAGCGCACACTTGT >site_82 ATTTATTCCATGTCACACTTTT >site_83 TAGAGATCTACTTCACAAATCA >site_84 TTTTGCGCGAGGTCACTATTTT >site_85 TTGCGGGTCGCGTCACATTTAA >site_86 AGGTGATTTTGATCACGGAATA >site_87 TTTTGAATCCCATCACAAACCC >site_88 CTGTGGTTGCCATCACAGATAT >site_89 TTGTGGCCTGCTTCAAACTTTC >site_90 AAGTGAACCATATCTCAATTCA >site_91 TTATGAAGCCCTTCACAGAATT >site_92 GTGCGGGCGTGATCACAATTAC >site_93 CTGTGACTCGATTCACGAAGTC >site_94 ACGCGACTTTTATCACTTTTTA >site_95 CGGTGACGGAGTTCACCCTTTA >site_96 TTGCAATTCGTGTCACAAAATA >site_97 TTACGACAGCTATCACGAATTT >site_98 ATTTGAAGCAGTTAACGCTATT >site_99 ACATGAGCAACCGCACATATTT >site_100 CTGCGAGTGGGAGCACGGTTTT >site_101 TTTTGCGCTAAAGCACATTTCT >site_102 GTGCGAAATCCGTCACAGTTCA >site_103 TTGTGATGTGGTTAACCAATTT >site_104 TCGTGAACGATCCCACGAATTT >site_105 CTGCGAGCATGGTCATATTTTT >site_106 GAGTGATATGTATAACATTATG >site_107 ATATGACCAACCTCTCATAATT >site_108 ATGCAAAGGACGTCACATTACC >site_109 GAGTGATCGAGTTAACATTGTT >site_110 TGGTGAGGAACTTAACAATATT >site_111 TTGAGATTCAACTCTCAAATTT >site_112 TTGTGAATCAGATCAGAAAACC >site_113 ATGTATGACAGATCACTATTTT >site_114 ATATGATAAATATCAAACAATG >site_115 ATGTAAGCTGTGCCACGTTTTT >site_116 TTGTGAGTTTTGTCACCAAATA >site_117 TTGCGATGAATGTCACATCCTC >site_118 TTATGACGAGGCACACACATTT >site_119 TTGAGGGGTTGATCACGTTTTG >site_120 TGTTGCTTTTGATCACAATAAG >site_121 TCGTGACAGGAATCACGGAGTT >site_122 GCTTGAGCCGCAGCACAATGTG >site_123 GTTTGACGGCTATCACGTTTCA >site_124 ATTTAATTCGTATCGCAAATTA >site_125 TGGTGATCCATAAAACAATATT >site_126 CCGTGAAAGCGATCACAAAGGG >site_127 TCGTGATACTCATCACCATGAC >site_128 ATGTGATCTACAGCATGTTATG >site_129 GCGTGCCAGTTTTCACATTCTT >site_130 TCTTGCTTACCGTCACATTCTT >site_131 CAGTGACAGATTTCACGAAAAT >site_132 GGTTGCACTCTCTCACATTTTT >site_133 GCCTGACGGAGTTCACACTTGT >site_134 TCATGAAACTGTGCACATTTTA >site_135 GCAGGATTTAGCTCACACTTAT >site_136 ACGCAGCGAAGATCACAATTTA >site_137 CATTTAAACAGATCACAAAATC >site_138 TATTGATCTAACTCACGAAAAT >site_139 TTACAAGGCACATCACGTTATG >site_140 CTGTGACCGTGGTCGCAGTTGG >site_141 TTGGAATATCCATCACATAACG >site_142 ATATGCGCGAAATCAAACAATT >site_143 GTGCGAGTCTGCTCGCATAATC >site_144 ATGTGACAGATAAAACGTTTTA >site_145 AATTGACCGATGCCACGTTTTG >site_146 ATATGTTTCGTTTCACAGTTCT >site_147 ATGTGCGCATCTCCACATTACC >site_148 ATGTTAATTTCCTCACATCGTG >site_149 ATGCGGTGAGCATCACATCACC >site_150 ACGAGATCTGACACACACTATA >site_151 CAGCGACATCTGTCACATTCCT >site_152 TTGGGCGACAGATCACGCAAAA >site_153 TTTTGAATCGTGTCTCATTCTG >site_154 GTGAGGCATAAATCACATTACG >site_155 TCGTGATATTGCTCACGCCAAA >site_156 TTCTAATAGCCATCACAAAACG >site_157 TTGTGGATAAAATCACGGTCTG >site_158 CTCTGAGATGGATCAAAGAATT >site_159 CTTAGAAACCGATCACATACAG >site_160 AATCGATTGCGTTCACGTTTAC >site_161 TATTGATTTAAATCAAAGATTC >site_162 AATTGAACCAAATCATAAAATC >site_163 ATTGAACCCCGATCACACCATA >site_164 TAATGAAAAGGATGACATATTC >site_165 ACTTGCGTGACTACACATTCTT >site_166 AGCAGATACAACTCACACAATG >site_167 CTGTGCTGCGCATAATACTTTG >site_168 CCATGCTCAATCTCACAAAGTG >site_169 ATTCGACAAAGCGCACAATCCG >site_170 ACAGGAAGCACATCACAAAGAC >site_171 ATTTGCCACAGGTAACAAAAAA >site_172 TACGGATCTTCATCACATAAAA >site_173 CTGTGACAAGCTCCGCAAATCG >site_174 CAACGCTTTGGCTCACAGTTTA >site_175 ACAAAACATATGTCACAATATT >site_176 ATATGATCTATATCAATTTCTC >site_177 CTGTTGATATGATCACGTTATA >site_178 TTTAGATGTAAATCACTCCATT >site_179 ATGTGAAATAAAACAATTATTT >site_180 ACCTGTCACAAATCACAAAAAG >site_181 TAGTGCTCAGCGACACTATTTT >site_182 TTCTTATCTACCTCACAAAGGT >site_183 CTGTGCGCGCAACGACATTTTG >site_184 TTACAAAATTGTTAACAATTTT >site_185 ATTTTAACAACTTGACATATAT >site_186 CTTCGTAACGCCTCGCAAATTT >site_187 AACCTCTTTGCGTCACATTTTT >site_188 TTTTGTAACAATTCAAACTTCT >site_189 TCAGGCGTTAAATCACGTTTTC >site_190 TTCATCTCTATGTCACATTTTG >site_191 TTGTTACCTGCCTCTAACTTTG >site_192 ATGTGATATTGCTCTCCTATGG >site_193 ACGTTAACTGAAACGCATATTT >site_194 TATTGATGTAAATCAAATTCAC >site_195 CCATGAAACGGAACACGAAAAT >site_196 ATAATAATCTAATCACATCTTG >site_197 TGGTGCGCATGATAACGCCTTT >site_198 GTGCAGGCTTGATCACAACTCC >site_199 AGGTAATTCGAATGACATTGCT >site_200 CTGGGATGAAAGTGACATTTGA >site_201 CCGACGAATAGATCACAATTTA >site_202 ATTAGTAAGTTATCACCATTTG >site_203 CTGTGATAGTGTCATCATTTTC >site_204 GCTTAATTTAAATAACAAAATC >site_205 ATGTGATGAGAAAGTCAATTTG >site_206 TGACGCATGAAATCACGTTTCA >site_207 ATGCAAAATCAAAAACAATTTC >site_208 AATCGATTTAACACACCATTTA >site_209 TTGTAAACAGATTAACACCTCG >site_210 CAGTTATTTTTAACAAATTTTT >site_211 TGTTGCTGACCTTCAAAAATTA >site_212 TTGTCATCTTTCTGACACCTTA >site_213 AAGTTCGATATTTCTCGTTTTT >site_214 CTGGAACGCTTTTCGCATTCTG >site_215 ACCCGCTTTAAAACACGCTATC >site_216 GTTTGACATTGTTCTCTCACTT >site_217 CCTCGGTTTAGTTCACAGAAGC >site_218 TAGTTACATGTTTAACACTTGA >site_219 ATCTGGGTAGCATCACAGCAGA >site_220 AGGCGACCTGGGTCATGCTGAA >site_221 ATCTTGAAATAATCACATTGAT >site_222 ATTGTTATCCGCTCACAATTCC >site_223 TGTGGAAATTAATCCCACTATT >site_224 CTGCATATTAATTGACATTTCT >site_225 CGGGTATTAGCACCACATATAA >site_226 ATGTAATAAAATTCATGGTAAT >site_227 TTTTACTTTTGGTTACATATTT >site_228 TCTTTATCTTTGTAGCACTTTC >site_229 ACGCGCACTATGTCAACTCTTG >site_230 CAATGAAAAATTGCACAGTAAA >site_231 GTTAAATTGATGTAACATAATC >site_232 TTGAGTCATAAATAACCTTTAG >site_233 AGGTGAATCGCGCCAGCAAATT >site_234 CTGAGACTAGTACGACTTTTTG >site_235 AGTTGTAACTATGCACAAATGT >site_236 CCCCATGGCAGATGACATTTTT >site_237 AAAATATCCTTGTCACATTCGT >site_238 ATGTAAATTGGTCAACCATTGT >site_239 ACACTATGAGCAAAACACATTT >site_240 ATTTAATCATGTTTACAGTAAT >site_241 CTGGGAGCAGGCTCGATTTATG >site_242 ACATGATAAATTTGACGAAGAA >site_243 CAGTGAACCCCTTCCCAACCAC >site_244 GAATGCTAATCATCAGAAATGT >site_245 TTTGGGTTGTTATCAAATCGTT >site_246 TGTAAATCTGCATCGGAATTTG >site_247 TTCATACCACCATCACAACCAC >site_248 TATTTAACGCCGTCAGAAATGT >site_249 AAGGTGACTATACCACACTCAT >site_250 TTAGCAAATACCTCACAGTGAA >site_251 CTGCAACCATCTACAAATAACC >site_252 CGGGTAATAACAACACTCATAT >site_253 TTTCCTGAAAATTCACGCTGTA >site_254 ATTTAATGAAGAGAATTTTTTT >site_255 CTGCGTGAAGCAGCAGTAAATC >site_256 ACAGGCACCTGATAAAGCCATT >site_257 GGCAAGTGGTATTCGCACTTTT >site_258 GTACGTTTGCAGTGAAATAACT >site_259 ATAACAAAATCCTAATGTTATT ; ; Matrix parameters ; Number of sites 260 ; Columns 22 ; Rows 4 ; Alphabet A|C|G|T ; Prior A:0.291144263562772|C:0.207810681831126|G:0.204024081631615|T:0.297020972974487|a:0.291144263562772|c:0.207810681831126|g:0.204024081631615|t:0.297020972974487 ; program transfac ; matrix.nb 1 ; accession CRP.RegulonDB2012 ; AC CRP.RegulonDB2012 ; id CRP.RegulonDB2012 ; name CRP.RegulonDB2012 ; description wtGtGatcyrsaTCACahwttt ; statistical_basis 260 sequences ; sites 260 ; nb_sites 260 ; min.prior 0.204024 ; alphabet.size 4 ; max.bits 2 ; total.information 7.08969 ; information.per.column 0.322259 ; max.possible.info.per.col 1.58952 ; consensus.strict atGtGatccagaTCACattttt ; consensus.strict.rc AAAAATGTGATCTGGATCACAT ; consensus.IUPAC wtGtGatcyrsaTCACahwttt ; consensus.IUPAC.rc AAAWDTGTGATSYRGATCACAW ; consensus.regexp [at]tGtGatc[ct][ag][cg]aTCACa[act][at]ttt ; consensus.regexp.rc AAA[AT][AGT]TGTGAT[CG][CT][AG]GATCACA[AT] ; residues.content.crude.freq A:0.3059|C:0.2065|G:0.1629|T:0.3247 ; G+C.content.crude.freq 0.369406 ; residues.content.corrected.freq A:0.3059|C:0.2065|G:0.1631|T:0.3245 ; G+C.content.corrected.freq 0.369568 ; min(P(S|M)) 2.2426e-28 ; max(P(S|M)) 1.77642e-06 ; proba_range 1.77642e-06 ; Wmin -30.7 ; Wmax 16 ; Wrange 46.7 ; logo file:/space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012//matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_logo_m1.png ; logo file:/space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/CRP.RegulonDB2012//matrix-quality_2018-03-21.175002_CRP.RegulonDB2012_logo_m1_rc.png ; ; Host name sinik ; Job started 2018-03-21.175013 ; Job done 2018-03-21.175013 ; Seconds 0.42 ; user 0.42 ; system 0.04 ; cuser 0.42 ; csystem 0.05