; convert-matrix -v 1 -from transfac -i $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012/matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_matrix.tf -to tab -o $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012/matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_matrix_info.txt -bgfile $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/matrix-quality_2018-03-21.1750022nt_upstream-noorf_Escherichia_coli_GCF_000005845.2_ASM584v2-ovlp-1str.freq.gz_inclusive.tab -bg_format inclusive -return counts,frequencies,weights,info,parameters,sites,logo -logo_format png -logo_opt '-e -M -t LexA.RegulonDB2012 ' -logo_file $RSAT/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012/matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_logo ; Input files ; input /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012/matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_matrix.tf ; prior /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/matrix-quality_2018-03-21.1750022nt_upstream-noorf_Escherichia_coli_GCF_000005845.2_ASM584v2-ovlp-1str.freq.gz_inclusive.tab ; Input format transfac ; Output files ; output /space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012/matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_matrix_info.txt ; Output format tab ; pseudo-weight 1 ; Background model ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.29114 ; c 0.20781 ; g 0.20402 ; t 0.29702 A 16 26 1 2 0 6 30 1 31 16 33 18 25 16 23 1 37 4 2 21 C 6 4 39 1 1 3 5 3 1 4 0 7 1 9 16 38 1 0 12 4 G 1 7 0 0 39 8 0 5 6 6 2 1 5 3 1 1 0 35 7 7 T 17 3 0 37 0 23 5 31 2 14 5 14 9 12 0 0 2 1 19 8 // A 0.4 0.6 0.0 0.1 0.0 0.2 0.7 0.0 0.8 0.4 0.8 0.4 0.6 0.4 0.6 0.0 0.9 0.1 0.1 0.5 C 0.2 0.1 1.0 0.0 0.0 0.1 0.1 0.1 0.0 0.1 0.0 0.2 0.0 0.2 0.4 0.9 0.0 0.0 0.3 0.1 G 0.0 0.2 0.0 0.0 1.0 0.2 0.0 0.1 0.2 0.2 0.1 0.0 0.1 0.1 0.0 0.0 0.0 0.9 0.2 0.2 T 0.4 0.1 0.0 0.9 0.0 0.6 0.1 0.8 0.1 0.3 0.1 0.3 0.2 0.3 0.0 0.0 0.1 0.0 0.5 0.2 // A 0.3 0.8 -2.2 -1.7 -3.7 -0.6 0.9 -2.2 1.0 0.3 1.0 0.4 0.8 0.3 0.7 -2.2 1.1 -1.0 -1.7 0.6 C -0.3 -0.7 1.5 -2.0 -2.0 -1.0 -0.5 -1.0 -2.0 -0.7 -3.7 -0.2 -2.0 0.1 0.6 1.5 -2.0 -3.7 0.4 -0.7 G -1.9 -0.1 -3.7 -3.7 1.5 -0.0 -3.7 -0.5 -0.3 -0.3 -1.3 -1.9 -0.5 -1.0 -1.9 -1.9 -3.7 1.4 -0.1 -0.1 T 0.4 -1.3 -3.7 1.1 -3.7 0.6 -0.8 0.9 -1.7 0.2 -0.8 0.2 -0.3 0.0 -3.7 -3.7 -1.7 -2.2 0.5 -0.4 // A 0.1 0.5 -0.1 -0.1 -0.0 -0.1 0.7 -0.1 0.7 0.1 0.8 0.2 0.5 0.1 0.4 -0.1 1.0 -0.1 -0.1 0.3 C -0.0 -0.1 1.5 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.0 -0.0 -0.1 0.0 0.3 1.4 -0.1 -0.0 0.1 -0.1 G -0.1 -0.0 -0.0 -0.0 1.5 -0.0 -0.0 -0.1 -0.0 -0.0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.0 1.2 -0.0 -0.0 T 0.1 -0.1 -0.0 1.0 -0.0 0.4 -0.1 0.7 -0.1 0.1 -0.1 0.1 -0.1 0.0 -0.0 -0.0 -0.1 -0.1 0.2 -0.1 // ; Sites 40 >site_0 GACTGTATAAAACCACAGCC >site_1 TCCTCTCTGCAATACGCAGA >site_2 AGCTGAATAAATATACAGCA >site_3 CACTGTATACTTTACCAGTG >site_4 ACCAGAATATACATAATAGT >site_5 CACTGTATAAATAAACAGCT >site_6 AACTGATTAAAAACCCAGCG >site_7 AACTGTCGATAAGCGCAGCC >site_8 CGCTGCCCTGAAAGCCAGGC >site_9 TACTGGATAAAAAAACAGTT >site_10 TACTGTATAAACAGCCAATA >site_11 TGCTGTATGGATTAACAGGA >site_12 TACTGTATGGATGTACAGTA >site_13 ACCTGTATAAATAACCAGTA >site_14 ATCTGCTGGCAAGAACAGAC >site_15 TACTGTATATAAAAACAGTA >site_16 CACTGTATAAAAATCCTATA >site_17 AACTGTCGATACGTACAGTA >site_18 CACTGGATAGATAACCAGCA >site_19 TACTGTATAAAATCACAGTT >site_20 TGCTGGATAGATATCCAGCG >site_21 AACTGAAAAATGGCACAGTA >site_22 TACCGGATCGTTTCACAGTA >site_23 TACTGTATATAAAAACAGTA >site_24 AACTGGATAAAATTACAGGG >site_25 TACTGTATATAAAACCAGTT >site_26 TACTGTACACAATAACAGTA >site_27 TACTGTATGAGCATACAGTA >site_28 CTATGTTTATATAACCATCA >site_29 AGCTGGCGTTGATGCCAGCG >site_30 AACTGGATAATCATACAGTA >site_31 TGCAGGTTATAAAACCAGCA >site_32 AACTGTATATAAATACAGTT >site_33 TACTGTATAAATAAACAGTA >site_34 ATCTGTATATATACCCAGCT >site_35 AACTGCACAATAAACCAGAG >site_36 TGCTGTATATACTCACAGCA >site_37 AACTGTATATACACCCAGGG >site_38 ACCTGAATGAATATACAGTA >site_39 TACTGATGATATATACAGGT ; ; Matrix parameters ; Number of sites 40 ; Columns 20 ; Rows 4 ; Alphabet A|C|G|T ; Prior A:0.291144263562772|C:0.207810681831126|G:0.204024081631615|T:0.297020972974487|a:0.291144263562772|c:0.207810681831126|g:0.204024081631615|t:0.297020972974487 ; program transfac ; matrix.nb 1 ; accession LexA.RegulonDB2012 ; AC LexA.RegulonDB2012 ; id LexA.RegulonDB2012 ; name LexA.RegulonDB2012 ; description waCTGtatawAwahmCAGya ; statistical_basis 40 sequences ; sites 40 ; nb_sites 40 ; min.prior 0.204024 ; alphabet.size 4 ; max.bits 2 ; total.information 11.0099 ; information.per.column 0.550495 ; max.possible.info.per.col 1.58952 ; consensus.strict taCTGtataaAaaaaCAGta ; consensus.strict.rc TACTGTTTTTTTATACAGTA ; consensus.IUPAC waCTGtatawAwahmCAGya ; consensus.IUPAC.rc TRCTGKDTWTWTATACAGTW ; consensus.regexp [at]aCTGtata[at]A[at]a[act][ac]CAG[ct]a ; consensus.regexp.rc T[AG]CTG[GT][AGT]T[AT]T[AT]TATACAGT[AT] ; residues.content.crude.freq A:0.3863|C:0.1937|G:0.1675|T:0.2525 ; G+C.content.crude.freq 0.36125 ; residues.content.corrected.freq A:0.3839|C:0.1941|G:0.1684|T:0.2536 ; G+C.content.corrected.freq 0.362484 ; min(P(S|M)) 4.00406e-35 ; max(P(S|M)) 0.000196197 ; proba_range 0.000196197 ; Wmin -49.8 ; Wmax 17.5 ; Wrange 67.3 ; logo file:/space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012//matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_logo_m1.png ; logo file:/space23/rsat/public_html/tmp/apache/2018/03/21/matrix-quality_2018-03-21.175002_zdBRpm/LexA.RegulonDB2012//matrix-quality_2018-03-21.175002_LexA.RegulonDB2012_logo_m1_rc.png ; ; Host name sinik ; Job started 2018-03-21.175004 ; Job done 2018-03-21.175004 ; Seconds 0.32 ; user 0.32 ; system 0.03 ; cuser 0.38 ; csystem 0.07