; retrieve-variation-seq -species Homo_sapiens -assembly GRCh37 -i $RSAT/public_html/tmp/amedina/2018/03/22/retrieve-variation-seq_-v_0_2018-03-22.173629_kkjUt7retrieve-variation-seq_input -format varBed -mml 30 ; Input file ; $RSAT/public_html/tmp/amedina/2018/03/22/retrieve-variation-seq_-v_0_2018-03-22.173629_kkjUt7retrieve-variation-seq_input ; Column contents ; chr - Chromosome ; start - Start position ; end - End position ; strand - Strand ; id - Identifier ; soterm - Sequence ontology (SO) term describing variation type ; ref_var - Reference variant ; alt_var - Alternative variant ; allele_freq - Frequency of the current allele ; seq - Sequence of the current variant, flanked by a user-specified neighbouring region #chr start end strand id soterm ref_var alt_var allele_freq seq 1 109817589 109817590 + rs12740374 SNV G T 0.18641 aacacagtgctggctcggctgccctgagggTtgctcaatcaagcacaggtttcaagtctgg 1 109817589 109817590 + rs12740374 SNV G G 0.18641 aacacagtgctggctcggctgccctgagggGtgctcaatcaagcacaggtttcaagtctgg 10 123333996 123333997 + rs7895676 SNV C T 0.376033 gggaggcgggggttgcagtgagcccagatcTgcaccactgcactccagcctgggtgacaga 10 123333996 123333997 + rs7895676 SNV C C 0.376033 gggaggcgggggttgcagtgagcccagatcCgcaccactgcactccagcctgggtgacaga 10 123340310 123340311 + rs2981578 SNV C T 0.37787 acagttaacctttcttccctgctccaaaccTgcatatttgcatagaggtaaaagcttcaag 10 123340310 123340311 + rs2981578 SNV C C 0.37787 acagttaacctttcttccctgctccaaaccCgcatatttgcatagaggtaaaagcttcaag 10 123340430 123340432 + rs35054928 deletion CC C 0.485767 ggaagctttagatctcagaagggctgtgcgCcggctcccacgaatgtaggctttctgggac 10 123340430 123340432 + rs35054928 deletion CC CC 0.485767 ggaagctttagatctcagaagggctgtgcgCCcggctcccacgaatgtaggctttctgggac 11 69234619 69234620 + rs7948643 SNV T C 0.203857 ggtgctcaggggtcggcgctcaggatcactCgggcagccgtacgtgtcccaggcagcggga 11 69234619 69234620 + rs7948643 SNV T T 0.203857 ggtgctcaggggtcggcgctcaggatcactTgggcagccgtacgtgtcccaggcagcggga 11 69331641 69331642 + rs554219 SNV C G 0.114325 atgaaggtctagagcagggaaatcctcaccGggaaacccacagtcaacccagcacctcctg 11 69331641 69331642 + rs554219 SNV C C 0.114325 atgaaggtctagagcagggaaatcctcaccCggaaacccacagtcaacccagcacctcctg 11 69379160 69379161 + rs75915166 SNV C A 0.0284665 aaggctcttaagagatgagatcatccaggcAttaacagggtgggccctaaatcccccgaca 11 69379160 69379161 + rs75915166 SNV C C 0.0284665 aaggctcttaagagatgagatcatccaggcCttaacagggtgggccctaaatcccccgaca 16 209708 209709 + SNP195 SNV T C NA tgggtgctgagctgccacacccacattattCagaaaataacagcacaggcttggggtggag 16 209708 209709 + SNP195 SNV T T NA tgggtgctgagctgccacacccacattattTagaaaataacagcacaggcttggggtggag 16 52599187 52599188 + rs4784227 SNV C T 0.21809 ggaaaaaagtcccaatttgtagtgtttgccTgattattgtgatgtaaatactcccatcatg 16 52599187 52599188 + rs4784227 SNV C C 0.21809 ggaaaaaagtcccaatttgtagtgtttgccCgattattgtgatgtaaatactcccatcatg 17 69107815 69107816 + rs8072254 SNV A G 0.353076 gtaaatatttgaatggtagaaccggtgagaGacctgaatagtaaatattttatgagaggaa 17 69107815 69107816 + rs8072254 SNV A A 0.353076 gtaaatatttgaatggtagaaccggtgagaAacctgaatagtaaatattttatgagaggaa 17 69108654 69108655 + rs1859961 SNV A G 0.00367309 aaagtaaattctcaccccggaaggcaaataGacaattatttcattaaacattcaaatcaca 17 69108654 69108655 + rs1859961 SNV A A 0.00367309 aaagtaaattctcaccccggaaggcaaataAacaattatttcattaaacattcaaatcaca 4 145488333 145488334 + rs1542725 SNV C T 0.294307 aagtgctgtggtctgaatgtttgtgtccccTtcccaaattcatagttaaaacttaatcact 4 145488333 145488334 + rs1542725 SNV C C 0.294307 aagtgctgtggtctgaatgtttgtgtccccCtcccaaattcatagttaaaacttaatcact 5 159894846 159894847 + rs57095329 SNV A G 0.117539 atttccccgcggggctgcggagagtacagaGcaggaagcctggggacccagcgcctgacca 5 159894846 159894847 + rs57095329 SNV A A 0.117539 atttccccgcggggctgcggagagtacagaAcaggaagcctggggacccagcgcctgacca 8 128413304 128413305 + rs6983267 SNV G T 0.436639 catcgtcctttgagctcagcagatgaaaggTcactgagaaaagtacaaagaatttttatgt 8 128413304 128413305 + rs6983267 SNV G G 0.436639 catcgtcctttgagctcagcagatgaaaggGcactgagaaaagtacaaagaatttttatgt 8 128531688 128531689 + rs11986220 SNV A T 0.103765 ttctagccagtgcaattaagaggaaaaaaaTtaaataaaaaggcatatgtgttgaaaggaa 8 128531688 128531689 + rs11986220 SNV A A 0.103765 ttctagccagtgcaattaagaggaaaaaaaAtaaataaaaaggcatatgtgttgaaaggaa