RSAT - footprint-discovery

Given one or several genes from a query organism, collect all orthologous genes for a given taxonomical level
and discover conserved elements in their promoters.
(Program developed by Rekin's Janky and Jacques van Helden).
Reference: Janky & van Helden, BMC Bioinformatics 2008, 9:37.

Query

Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

Organism 
[List of orthologs] not seeing your favorite organism in the list ? Contact us to have it installed
Query genes 

Upload gene list from file

Taxon/Organism  [List of taxonomy]


predict operon leader genes
Treat genes 

Options for dyad-analysis


Output  
      [Sample Output] MANUAL