RSAT - info-gibbs

An enhanced gibbs sampler, based on a stochastic optimization of the information content of position-specific scoring matrices.

Reference: Defrance M, van Helden J. (2009) Info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. Bioinformatics 25(20):2715-22. [Pubmed 19689955] [Open acces]

Sequence       Format Paste your sequence in the box below

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search both strands
Matrix length
Expected number of sites per sequence
Number of motifs to extract
Maximum number of iterations
Number of runs

Background model
Estimated from input sequences

Genome subset  Sequence type     

    Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

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      Markov background order