RSAT - Retrieve sequences from genomic coordinates

Retrieve sequences for a set of genomic coordinates provided in bed, gff or vcf format.

Program developed by Bruno Contreras Moreira and Jacques van Helden

Genomic coordinates

Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

[List of organisms] not seeing your favorite organism in the list ? Contact us to have it installed

Genomic coordinates     Paste your coordinates (bed/gff/vcf format)

Or select a file to upload (.gz compressed files supported)

   URL of a coordinates file available on a Web server.


 Mask repeats



    MANUAL MAIL Sample output