RSAT - retrieve-matrix

Retrieve the matrices with identifiers.


Input1 - Select a database in list:
2 - Select a collection in list:
3 - Select one or more matrix identifiers:

View matrix descriptions & download full collections

Fungi

JASPAR core nonredundant fungi - [0 motifs] (2020) - [local copy]
JASPAR core redundant fungi - [0 motifs] (2020) - [local copy]
Yeastract s_cerevisiae - [0 motifs] (20130918) - [local copy]
cisBP Saccharomyces_cerevisiae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP s_cerevisiae - [0 motifs] (2015-06_v1.02) - [local copy]

Multi-organisms

JASPAR unvalidated - [0 motifs] (2020) - [local copy]
JASPAR core redundant all - [0 motifs] (2020) - [local copy]
JASPAR core nonredundant all - [0 motifs] (2020) - [local copy]
footprintDB all - [11842 motifs] (2020-01) - [local copy]
RSAT non-redundant insects+plants+vertebrates - [0 motifs] (2017) - [local copy]

Non-vertebrate Metazoa

DrosophilaTFs - [0 motifs] (2015-11) - [local copy]
Drosophila IDMMPMM - [0 motifs] (2010_11) - [local copy]
Drosophila DMMPMM - [0 motifs] (2010_11) - [local copy]
JASPAR core nonredundant urochordates - [0 motifs] (2020) - [local copy]
JASPAR core redundant urochordates - [0 motifs] (2020) - [local copy]
JASPAR core redundant nematodes - [0 motifs] (2020) - [local copy]
JASPAR core redundant insects - [0 motifs] (2020) - [local copy]
JASPAR core nonredundant nematodes - [0 motifs] (2020) - [local copy]
JASPAR core nonredundant insects - [0 motifs] (2020) - [local copy]
footprintDB-metazoa [only metazoa DNA motifs] - [7464 motifs] (2020-01) - [local copy]
RSAT non-redundant insects - [0 motifs] (2017) - [local copy]
Database of Drosophila DNA-binding specificities (FlyFactorSurvey) - [0 motifs] (2016_06) - [local copy]
cisBP Caenorhabditis_briggsae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Caenorhabditis_brenneri - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Culex_quinquefasciatus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Anopheles_darlingi - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Onchocerca_volvulus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Tetranychus_urticae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_pseudoobscura - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Schistosoma_mansoni - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_simulans - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_mojavensis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Crassostrea_gigas - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_persimilis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Octopus_bimaculoides - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_melanogaster - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Anopheles_gambiae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Trichoplax_adhaerens - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Lucilia_cuprina - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Apis_mellifera - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_erecta - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Strongylocentrotus_purpuratus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP drosophila - [0 motifs] (2014-10_v0.9) - [local copy]
cisBP Heliconius_melpomene - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Trichinella_spiralis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Zootermopsis_nevadensis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Tribolium_castaneum - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_yakuba - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Acyrthosiphon_pisum - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Melitaea_cinxia - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_willistoni - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Brugia_malayi - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Loa_loa - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Daphnia_pulex - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Strigamia_maritima - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Amphimedon_queenslandica - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Solenopsis_invicta - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Ixodes_scapularis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Rhodnius_prolixus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Lottia_gigantea - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Megaselia_scalaris - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Atta_cephalotes - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Pediculus_humanus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Caenorhabditis_japonica - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_sechellia - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP c_elegans - [0 motifs] (2015-05_v1.02) - [local copy]
cisBP Dendroctonus_ponderosae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_virilis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Ciona_intestinalis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Danaus_plexippus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_ananassae - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Bombyx_mori - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Caenorhabditis_remanei - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Aedes_aegypti - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Caenorhabditis_elegans - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Pristionchus_pacificus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Drosophila_grimshawi - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Helobdella_robusta - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Nasonia_vitripennis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Nematostella_vectensis - [0 motifs] (2019-06_v2.00) - [local copy]

Plants

ArabidopsisPBM (A thaliana) - [0 motifs] (2015-11) - [local copy]
JASPAR core redundant plants - [0 motifs] (2020) - [local copy]
JASPAR core nonredundant plants - [0 motifs] (2020) - [local copy]
Athamap (A thaliana) - [0 motifs] (2015-11) - [local copy]
footprintDB-plants [only plant DNA motifs] - [1878 motifs] (2020-01) - [local copy]
RSAT non-redundant plants - [0 motifs] (2017) - [local copy]
Cistrome (A thaliana motifs detected by DAP-seq) - [0 motifs] (2016-06) - [local copy]
cisBP Oryza_rufipogon - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Brachypodium_distachyon - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Prunus_persica - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Vitis_vinifera - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Brassica_rapa - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP a_thaliana - [0 motifs] (2015-06_v1.02) - [local copy]
cisBP Leersia_perrieri - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_brachyantha - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Brassica_oleracea - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Musa_acuminata - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Sorghum_bicolor - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_glaberrima - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_sativa - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Solanum_tuberosum - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Medicago_truncatula - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Setaria_italica - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Prunus_mume - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_barthii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Ostreococcus_lucimarinus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Gossypium_raimondii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Triticum_urartu - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Manihot_esculenta - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_glumaepatula - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_nivara - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Chlamydomonas_reinhardtii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Glycine_max - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Brassica_napus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_punctata - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Helianthus_annuus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Solanum_lycopersicum - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Zea_mays - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Selaginella_moellendorffii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_indica - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Cucumis_sativus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Hordeum_vulgare - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Physcomitrella_patens - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Populus_trichocarpa - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_longistaminata - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Aegilops_tauschii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Fragaria_vesca - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Amborella_trichopoda - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Triticum_aestivum - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oryza_meridionalis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Arabidopsis_lyrata - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Phaseolus_vulgaris - [0 motifs] (2019-06_v2.00) - [local copy]

Prokaryotes

DBTBS (Bacillus Subtilis) - [0 motifs] (2015-11) - [local copy]
RegulonDB prokaryotes - [0 motifs] (2015_08) - [local copy]

RNA binding

RBPDB - [0 motifs] (2017) - [local copy]
ATtRACT - [0 motifs] (2017) - [local copy]
CISBP-RNA - [0 motifs] (2017) - [local copy]

Vertebrates

Homer (Human TF motifs) - [0 motifs] (2016-07) - [local copy]
Methylated motifs HCT116 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs H1-hESC (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs GM12878 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs SK-N-SH (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs IMR-90 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs A549 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs HepG2 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs SNU398 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs HeLa-S3 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs HEK293 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs HEK293T (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs K562 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Methylated motifs MCF-7 (Human TFs) - [0 motifs] (2018-11) - [local copy]
Hocomoco (Mouse TFs) - [0 motifs] (2017-10) - [local copy]
Hocomoco (Human TFs) - [0 motifs] (2017-10) - [local copy]
hPDI (Human TFs identified by protein microarray assays) - [0 motifs] (2016-06) - [local copy]
HT-Selex (Human TFs) - [0 motifs] (2018-03) - [local copy]
HT-Methyl-Selex (Human TFs) - [0 motifs] (2018-03) - [local copy]
ENCODE (Human TFs) - [0 motifs] (2018-03) - [local copy]
JASPAR core nonredundant vertebrates - [0 motifs] (2020) - [local copy]
JASPAR core redundant vertebrates - [0 motifs] (2020) - [local copy]
RSAT non-redundant vertebrates - [0 motifs] (2017) - [local copy]
Jolma_2013 (Human TFs) - [0 motifs] (2015-11) - [local copy]
Human_TF_dimers (Human TFs dimers) - [0 motifs] (2016-05) - [local copy]
cisBP Echinops_telfairi - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Mus_musculus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Erinaceus_europaeus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP mouse - [0 motifs] (2014-10_v0.9) - [local copy]
cisBP Dipodomys_ordii - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Cavia_porcellus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Equus_caballus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Chlorocebus_sabaeus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP human - [0 motifs] (2014-10_v0.9) - [local copy]
cisBP Bos_taurus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Astyanax_mexicanus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Rattus_norvegicus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Homo_sapiens - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Danio_rerio - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Gallus_gallus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Ailuropoda_melanoleuca - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Dasypus_novemcinctus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Callithrix_jacchus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Anas_platyrhynchos - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Oreochromis_niloticus - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Xenopus_tropicalis - [0 motifs] (2019-06_v2.00) - [local copy]
cisBP Choloepus_hoffmanni - [0 motifs] (2019-06_v2.00) - [local copy]
Epigram (Human Histone marks related motifs) - [0 motifs] (2016-06) - [local copy]
NCAP-SELEX (HUMAN TFs) - [0 motifs] (2018-09) - [local copy]
CAP-SELEX - [0 motifs] (2018-09) - [local copy]

ZF_ChIP-exo

2020-07 - [0 motifs] (https://www.biorxiv.org/content/10.1101/630756v4) - [local copy]

ZF_ChIP-seq

2020-07 - [0 motifs] (https://www.biorxiv.org/content/10.1101/630756v4) - [local copy]


  MANUAL 


Result

The selected matrix will be displayed in the table below