RSAT - infer operons

Infer bacterial operons based on intergenic distances.
This program was developed by Rekins Janky and Jacques van Helden.

Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

[List of operon inference organisms] not seeing your favorite organism in the list ? Contact us to have it installed


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Distance threshold (bp)       Minimum number of genes 

Return fields 
Query gene name
Predicted operon leader gene
Predicted operon trailer gene
Composition of the operon
Distance to upstream neighbour (negative for overlapping genes)
Detailed info on the query gene
Detailed info on the gene located upstream the query
Detailed info on the gene located downstream the query
Number of genes in the predicted operon