RSAT - seq-proba

Calculate the probability of a sequence, given a background model.
Bernoulli or Markov models are supported.
Sequences must be composed of A,C,G,T (IUPAC code for ambiguous nucleotides is not supported)


Sequence       Format Paste your sequence in the box below

Or select a file to upload (.gz compressed files supported)


Mask 

Background model

RSAT pre-calculated background models
    Markov order  

    Organism-specific

      Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

      Organism 
      [List of organisms] not seeing your favorite organism in the list ? Contact us to have it installed
      Sequence type  

    Count on
      prevent overlapping matches (noov)

Custom background model


Pseudo-frequencies


Return fields 
 id    proba_b    log_proba    len    seq    detail  


Output  
      MANUAL MAIL