RSAT - genome-scale dna-pattern

Search a pattern (string description) within all upstream or downstream regions

Sequence retrieval options

Genomes in the RSAT Prokaryotes server were recently re-installed. Genome names now follow the NCBI standard to easily identify assemblies, if you cannot find your genome please check this naming list to find the correct ID: Genome IDs list

Organism 
[List of organisms] not seeing your favorite organism in the list ? Contact us to have it installed
Feature type 
Sequence type From    To 
 allow overlap with upstream ORFs
Sequence label 

Pattern matching options

Query pattern(s)

Search strands    prevent overlapping matches
Return match positions flanking residues Origin Format
match counts threshold on match counts
match count table

Substitutions  
Output 
Warning ! genome-scale searches can be time-consuming. If you don't obtain any result after 5 minutes, we recommend email output.
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